Psyllid ID: psy8407

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQASK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHccccccccccccccccccccccccEccccccccccHHHHHHccEccccHHHHHHHcHHHHcccccccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mkcaqchtieaggahkvgpnlhgligrktgqapgfsyteANIKKGITWNKDTLFEYlenpkkyipgtkmifagikkpqERGDLIAYLEQASK
Flexible Loop (DISEMBL)
mkcaqchtieaggahkvgpnLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQASK
Low Complexity Region (SEG)
MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQASK
Disordered region (IsUnstruct)
*****CHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKP***GDLIAY******
Disordered Region (DISOPRED)
MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS*
Disordered Region (DISEMBL)
MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQASK
Disordered Region (DISPRO)
**CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQASK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
P12831	108	Cytochrome c OS=Sarcophag	N/A	N/A	0.989	0.842	0.846	5e-42
P84029	108	Cytochrome c-2 OS=Drosoph	yes	N/A	0.989	0.842	0.846	1e-41
P84030	108	Cytochrome c-2 OS=Ceratit	N/A	N/A	0.989	0.842	0.846	1e-41
P00038	108	Cytochrome c OS=Apis mell	yes	N/A	0.989	0.842	0.846	2e-41
P00036	108	Cytochrome c OS=Lucilia c	N/A	N/A	0.989	0.842	0.835	5e-41
P00039	108	Cytochrome c OS=Manduca s	N/A	N/A	0.989	0.842	0.802	1e-40
P00035	108	Cytochrome c OS=Haematobi	N/A	N/A	0.989	0.842	0.824	3e-40
P00040	108	Cytochrome c OS=Schistoce	N/A	N/A	0.989	0.842	0.780	2e-39
P00037	108	Cytochrome c OS=Samia cyn	N/A	N/A	0.989	0.842	0.780	1e-38
P81280	105	Cytochrome c OS=Alligator	N/A	N/A	0.978	0.857	0.822	1e-38

>sp|P12831|CYC_SARPE Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHGL GRKTGQAPGF+YT+AN  KGITWN+DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTDANKAKGITWNEDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKMIFAG+KKP ERGDLIAYL+ A+K
Sbjct: 78  KYIPGTKMIFAGLKKPNERGDLIAYLKSATK 108

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
Sarcophaga peregrina (taxid: 7386)

>sp|P84029|CYC2_DROME Cytochrome c-2 OS=Drosophila melanogaster GN=Cyt-c-p PE=1 SV=2

 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHGLIGRKTGQA GF+YT+AN  KGITWN+DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKMIFAG+KKP ERGDLIAYL+ A+K
Sbjct: 78  KYIPGTKMIFAGLKKPNERGDLIAYLKSATK 108

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Drosophila melanogaster (taxid: 7227)

>sp|P84030|CYC2_CERCA Cytochrome c-2 OS=Ceratitis capitata PE=1 SV=2

 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHGLIGRKTGQA GF+YT+AN  KGITWN+DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKMIFAG+KKP ERGDLIAYL+ A+K
Sbjct: 78  KYIPGTKMIFAGLKKPNERGDLIAYLKSATK 108

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Ceratitis capitata (taxid: 7213)

>sp|P00038|CYC_APIME Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 86/91 (94%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHTIE+GG HKVGPNL+G+ GRKTGQAPG+SYT+AN  KGITWNK+TLFEYLENPK
Sbjct: 18  KCAQCHTIESGGKHKVGPNLYGVYGRKTGQAPGYSYTDANKGKGITWNKETLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAG+KKPQER DLIAY+EQASK
Sbjct: 78  KYIPGTKMVFAGLKKPQERADLIAYIEQASK 108

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Apis mellifera (taxid: 7460)

>sp|P00036|CYC_LUCCU Cytochrome c OS=Lucilia cuprina PE=1 SV=2

 Score =  166 bits (419), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/91 (83%), Positives = 82/91 (90%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHGL GRKTGQAPGF+YT AN  KGITW  DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTNANKAKGITWQDDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKMIFAG+KKP ERGDLIAYL+ A+K
Sbjct: 78  KYIPGTKMIFAGLKKPNERGDLIAYLKSATK 108

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Lucilia cuprina (taxid: 7375)

>sp|P00039|CYC_MANSE Cytochrome c OS=Manduca sexta PE=1 SV=2

 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 83/91 (91%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HK+GPNLHG  GRKTGQAPGFSY++AN  KGITWN+DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKIGPNLHGFFGRKTGQAPGFSYSDANKAKGITWNEDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAG+KK  ER DLIAYL+QA+K
Sbjct: 78  KYIPGTKMVFAGLKKANERADLIAYLKQATK 108

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Manduca sexta (taxid: 7130)

>sp|P00035|CYC_HAEIR Cytochrome c OS=Haematobia irritans PE=1 SV=2

 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 81/91 (89%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHGL GRKTGQA GF+YT AN  KGITW  DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAAGFAYTNANKAKGITWQDDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKMIFAG+KKP ERGDLIAYL+ A+K
Sbjct: 78  KYIPGTKMIFAGLKKPNERGDLIAYLKSATK 108

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Haematobia irritans (taxid: 7368)

>sp|P00040|CYC_SCHGR Cytochrome c OS=Schistocerca gregaria PE=1 SV=2

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 84/91 (92%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HK GPNLHGL GRKTGQAPGFSYT+AN  KGITW+++TLF YLENPK
Sbjct: 18  RCAQCHTVEAGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKSKGITWDENTLFIYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAG+KKP+ER DLIAYL++++K
Sbjct: 78  KYIPGTKMVFAGLKKPEERADLIAYLKESTK 108

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Schistocerca gregaria (taxid: 7010)

>sp|P00037|CYC_SAMCY Cytochrome c OS=Samia cynthia PE=1 SV=2

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 80/91 (87%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHG  GRKTGQAPGFSY+ AN  KGITW  DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSNANKAKGITWGDDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAG+KK  ER DLIAYL++++K
Sbjct: 78  KYIPGTKMVFAGLKKANERADLIAYLKESTK 108

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Samia cynthia (taxid: 7127)

>sp|P81280|CYC_ALLMI Cytochrome c OS=Alligator mississippiensis PE=1 SV=2

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/90 (82%), Positives = 80/90 (88%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HK GPNLHGLIGRKTGQAPGFSYTEAN  KGITW ++TL EYLENPK
Sbjct: 14  KCAQCHTVEKGGKHKTGPNLHGLIGRKTGQAPGFSYTEANKNKGITWGEETLMEYLENPK 73

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKMIFAGIKK  ER DLIAYL++A+
Sbjct: 74  KYIPGTKMIFAGIKKKPERADLIAYLKEAT 103

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Alligator mississippiensis (taxid: 8496)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
340712193	108	PREDICTED: cytochrome c-like isoform 1 [	0.989	0.842	0.879	4e-42
383851538	108	PREDICTED: cytochrome c-like [Megachile	0.989	0.842	0.868	8e-42
156548290	108	PREDICTED: cytochrome c-like [Nasonia vi	0.989	0.842	0.868	9e-42
312370728	922	hypothetical protein AND_23138 [Anophele	0.978	0.097	0.822	1e-41
91088371	108	PREDICTED: similar to Cytochrome c proxi	0.989	0.842	0.857	4e-41
307184471	108	Cytochrome c-2 [Camponotus floridanus]	0.989	0.842	0.868	4e-41
195385914	108	GJ16722 [Drosophila virilis] gi|19414810	0.989	0.842	0.857	6e-41
90820024	108	cytochrome c-like protein [Graphocephala	0.989	0.842	0.868	7e-41
195118455	108	GI18081 [Drosophila mojavensis] gi|19391	0.989	0.842	0.857	8e-41
31202411	108	AGAP009537-PA [Anopheles gambiae str. PE	0.989	0.842	0.846	2e-40

>gi|340712193|ref|XP_003394648.1| PREDICTED: cytochrome c-like isoform 1 [Bombus terrestris] gi|340712195|ref|XP_003394649.1| PREDICTED: cytochrome c-like isoform 2 [Bombus terrestris] gi|350413917|ref|XP_003490153.1| PREDICTED: cytochrome c-like [Bombus impatiens]

 Score =  174 bits (442), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/91 (87%), Positives = 87/91 (95%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHTIEAGG HKVGPNLHG++GRKTGQAPG+SYT+AN  KGITWNKDTLFEYLENPK
Sbjct: 18  KCAQCHTIEAGGKHKVGPNLHGVMGRKTGQAPGYSYTDANKSKGITWNKDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAG+KKPQER DLIAY+EQASK
Sbjct: 78  KYIPGTKMVFAGLKKPQERADLIAYIEQASK 108

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851538|ref|XP_003701289.1| PREDICTED: cytochrome c-like [Megachile rotundata]

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 79/91 (86%), Positives = 87/91 (95%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C+QCHTIEAGG HKVGPNLHG+IGRKTGQAPG+SYT+AN  KGITWNKDTLFEYLENPK
Sbjct: 18  RCSQCHTIEAGGKHKVGPNLHGIIGRKTGQAPGYSYTDANKAKGITWNKDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAG+KKPQER DLIAY+EQASK
Sbjct: 78  KYIPGTKMVFAGLKKPQERADLIAYIEQASK 108

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548290|ref|XP_001606272.1| PREDICTED: cytochrome c-like [Nasonia vitripennis]

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 79/91 (86%), Positives = 87/91 (95%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHTI+AGG HKVGPNLHGLIGRKTGQAPG++YT+AN  KGITWNKDTLFEYLENPK
Sbjct: 18  RCAQCHTIDAGGKHKVGPNLHGLIGRKTGQAPGYAYTDANKAKGITWNKDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAG+KKPQERGDLIAY+E ASK
Sbjct: 78  KYIPGTKMVFAGLKKPQERGDLIAYIESASK 108

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312370728|gb|EFR19061.1| hypothetical protein AND_23138 [Anopheles darlingi]

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/90 (82%), Positives = 84/90 (93%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHG+ GRKTGQA GFSYT+AN  KGITW++DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGIFGRKTGQAAGFSYTDANKAKGITWSEDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKM+FAG+KKPQERGDLIAYL+ A+
Sbjct: 78  KYIPGTKMVFAGLKKPQERGDLIAYLKSAT 107

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088371|ref|XP_967227.1| PREDICTED: similar to Cytochrome c proximal CG17903-PA isoform 1 [Tribolium castaneum] gi|91088373|ref|XP_976104.1| PREDICTED: similar to Cytochrome c proximal CG17903-PA isoform 2 [Tribolium castaneum] gi|270011766|gb|EFA08214.1| hypothetical protein TcasGA2_TC005841 [Tribolium castaneum]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 85/91 (93%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HK GPNLHGLIGRKTGQA GF+YT+AN  KGITWNKDTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKTGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNKDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAG+KKPQER DLIAYLEQA+K
Sbjct: 78  KYIPGTKMVFAGLKKPQERADLIAYLEQATK 108

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184471|gb|EFN70874.1| Cytochrome c-2 [Camponotus floridanus]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/91 (86%), Positives = 86/91 (94%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHGLIGRKTGQA G+ YT+AN  KGITWNKDTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGYLYTDANKAKGITWNKDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAG+KKPQERGDLIAYLEQA+K
Sbjct: 78  KYIPGTKMVFAGLKKPQERGDLIAYLEQATK 108

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385914|ref|XP_002051649.1| GJ16722 [Drosophila virilis] gi|194148106|gb|EDW63804.1| GJ16722 [Drosophila virilis]

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 86/91 (94%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHGLIGRKTGQAPGF+YT+AN  KGITWN+DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAPGFAYTDANKAKGITWNEDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKMIFAG+KKP ERGDLIAYL+ A+K
Sbjct: 78  KYIPGTKMIFAGLKKPNERGDLIAYLKSATK 108

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90820024|gb|ABD98769.1| cytochrome c-like protein [Graphocephala atropunctata]

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 79/91 (86%), Positives = 84/91 (92%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HKVGPNL GLIG KTGQAPGF+YT+ANI KGITWNKDTLF YLENPK
Sbjct: 18  KCAQCHTVEKGGKHKVGPNLSGLIGSKTGQAPGFAYTDANISKGITWNKDTLFMYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAGIKKPQE GDLIAYLEQA+K
Sbjct: 78  KYIPGTKMVFAGIKKPQESGDLIAYLEQATK 108

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118455|ref|XP_002003752.1| GI18081 [Drosophila mojavensis] gi|193914327|gb|EDW13194.1| GI18081 [Drosophila mojavensis]

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 86/91 (94%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHGLIGRKTGQAPGF+YT+AN  KGITWN+DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAPGFAYTDANKAKGITWNEDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKMIFAG+KKP ERGDLIAYL+ A+K
Sbjct: 78  KYIPGTKMIFAGLKKPNERGDLIAYLKAATK 108

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|31202411|ref|XP_310154.1| AGAP009537-PA [Anopheles gambiae str. PEST] gi|30178199|gb|EAA05914.2| AGAP009537-PA [Anopheles gambiae str. PEST]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +CAQCHT+EAGG HKVGPNLHGL GRKTGQA GFSYT+AN  KGITWN+DTLFEYLENPK
Sbjct: 18  RCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAAGFSYTDANKAKGITWNEDTLFEYLENPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM+FAG+KKPQERGDLIAYL+ A+K
Sbjct: 78  KYIPGTKMVFAGLKKPQERGDLIAYLKSATK 108

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
FB|FBgn0000409	108	Cyt-c-p "Cytochrome c proximal	0.989	0.842	0.846	1.2e-40
UNIPROTKB|P84030	108	P84030 "Cytochrome c-2" [Cerat	0.989	0.842	0.846	1.2e-40
UNIPROTKB|Q29MT2	108	GA14714 "GA14714" [Drosophila	0.989	0.842	0.846	1.2e-40
UNIPROTKB|P00011	105	CYCS "Cytochrome c" [Canis lup	0.989	0.866	0.802	8.9e-38
UNIPROTKB|P00013	105	CYCS "Cytochrome c" [Miniopter	0.989	0.866	0.802	1.9e-37
UNIPROTKB|P00007	105	CYCS "Cytochrome c" [Hippopota	0.978	0.857	0.8	2.4e-37
UNIPROTKB|P00012	105	CYCS "Cytochrome c" [Mirounga	0.989	0.866	0.802	2.4e-37
UNIPROTKB|P00002	105	CYCS "Cytochrome c" [Macaca mu	0.989	0.866	0.780	3e-37
UNIPROTKB|P62894	105	CYCS "Cytochrome c" [Bos tauru	0.978	0.857	0.8	4.9e-37
UNIPROTKB|P62895	105	CYCS "Cytochrome c" [Sus scrof	0.978	0.857	0.8	4.9e-37

FB|FBgn0000409 Cyt-c-p "Cytochrome c proximal" [Drosophila melanogaster (taxid:7227)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query:     2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
             +CAQCHT+EAGG HKVGPNLHGLIGRKTGQA GF+YT+AN  KGITWN+DTLFEYLENPK
Sbjct:    18 RCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPK 77

Query:    62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
             KYIPGTKMIFAG+KKP ERGDLIAYL+ A+K
Sbjct:    78 KYIPGTKMIFAGLKKPNERGDLIAYLKSATK 108

GO:0009055 "electron carrier activity" evidence=ISS;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006119 "oxidative phosphorylation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005506 "iron ion binding" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

UNIPROTKB|P84030 P84030 "Cytochrome c-2" [Ceratitis capitata (taxid:7213)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query:     2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
             +CAQCHT+EAGG HKVGPNLHGLIGRKTGQA GF+YT+AN  KGITWN+DTLFEYLENPK
Sbjct:    18 RCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPK 77

Query:    62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
             KYIPGTKMIFAG+KKP ERGDLIAYL+ A+K
Sbjct:    78 KYIPGTKMIFAGLKKPNERGDLIAYLKSATK 108

GO:0005739 "mitochondrion" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q29MT2 GA14714 "GA14714" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query:     2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
             +CAQCHT+EAGG HKVGPNLHGLIGRKTGQA GF+YT+AN  KGITWN+DTLFEYLENPK
Sbjct:    18 RCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPK 77

Query:    62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
             KYIPGTKMIFAG+KKP ERGDLIAYL+ A+K
Sbjct:    78 KYIPGTKMIFAGLKKPNERGDLIAYLKSATK 108

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|P00011 CYCS "Cytochrome c" [Canis lupus familiaris (taxid:9615)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 73/91 (80%), Positives = 80/91 (87%)

Query:     2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
             KCAQCHT+E GG HK GPNLHGL GRKTGQAPGFSYT+AN  KGITW ++TL EYLENPK
Sbjct:    14 KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPK 73

Query:    62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
             KYIPGTKMIFAGIKK  ER DLIAYL++A+K
Sbjct:    74 KYIPGTKMIFAGIKKTGERADLIAYLKKATK 104

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|P00013 CYCS "Cytochrome c" [Miniopterus schreibersii (taxid:9433)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 73/91 (80%), Positives = 79/91 (86%)

Query:     2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
             KCAQCHT+E GG HK GPNLHGL GRKTGQAPGFSYT+AN  KGITW + TL EYLENPK
Sbjct:    14 KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEATLMEYLENPK 73

Query:    62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
             KYIPGTKMIFAGIKK  ER DLIAYL++A+K
Sbjct:    74 KYIPGTKMIFAGIKKSAERADLIAYLKKATK 104

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

UNIPROTKB|P00007 CYCS "Cytochrome c" [Hippopotamus amphibius (taxid:9833)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 72/90 (80%), Positives = 79/90 (87%)

Query:     2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
             KCAQCHT+E GG HK GPNLHGL GRKTGQ+PGFSYT+AN  KGITW ++TL EYLENPK
Sbjct:    14 KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQSPGFSYTDANKNKGITWGEETLMEYLENPK 73

Query:    62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
             KYIPGTKMIFAGIKK  ER DLIAYL+QA+
Sbjct:    74 KYIPGTKMIFAGIKKKGERADLIAYLKQAT 103

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

UNIPROTKB|P00012 CYCS "Cytochrome c" [Mirounga leonina (taxid:9715)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 73/91 (80%), Positives = 79/91 (86%)

Query:     2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
             KCAQCHT+E GG HK GPNLHGL GRKTGQAPGFSYT+AN  KGITW ++TL EYLENPK
Sbjct:    14 KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPK 73

Query:    62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
             KYIPGTKMIFAGIKK  ER DLIAYL+ A+K
Sbjct:    74 KYIPGTKMIFAGIKKTGERADLIAYLKIATK 104

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

UNIPROTKB|P00002 CYCS "Cytochrome c" [Macaca mulatta (taxid:9544)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 71/91 (78%), Positives = 79/91 (86%)

Query:     1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
             MKC+QCHT+E GG HK GPNLHGL GRKTGQAPG+SYT AN  KGITW +DTL EYLENP
Sbjct:    13 MKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENP 72

Query:    61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
             KKYIPGTKMIF GIKK +ER DLIAYL++A+
Sbjct:    73 KKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

UNIPROTKB|P62894 CYCS "Cytochrome c" [Bos taurus (taxid:9913)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 72/90 (80%), Positives = 79/90 (87%)

Query:     2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
             KCAQCHT+E GG HK GPNLHGL GRKTGQAPGFSYT+AN  KGITW ++TL EYLENPK
Sbjct:    14 KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPK 73

Query:    62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
             KYIPGTKMIFAGIKK  ER DLIAYL++A+
Sbjct:    74 KYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|P62895 CYCS "Cytochrome c" [Sus scrofa (taxid:9823)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 72/90 (80%), Positives = 79/90 (87%)

Query:     2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
             KCAQCHT+E GG HK GPNLHGL GRKTGQAPGFSYT+AN  KGITW ++TL EYLENPK
Sbjct:    14 KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPK 73

Query:    62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
             KYIPGTKMIFAGIKK  ER DLIAYL++A+
Sbjct:    74 KYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P00020	CYC_ANAPL	No assigned EC number	0.7888	0.9782	0.8571	N/A	N/A
P00007	CYC_HIPAM	No assigned EC number	0.8	0.9782	0.8571	N/A	N/A
P00004	CYC_HORSE	No assigned EC number	0.7888	0.9782	0.8571	yes	N/A
P67882	CYC_MELGA	No assigned EC number	0.7888	0.9782	0.8571	yes	N/A
P00002	CYC_MACMU	No assigned EC number	0.7802	0.9891	0.8666	yes	N/A
P00003	CYC_ATESP	No assigned EC number	0.7692	0.9891	0.8666	N/A	N/A
P00026	CYC_CYPCA	No assigned EC number	0.7888	0.9782	0.8653	N/A	N/A
P00021	CYC_COLLI	No assigned EC number	0.8	0.9782	0.8571	N/A	N/A
Q52V08	CYC_MACSY	No assigned EC number	0.7802	0.9891	0.8666	N/A	N/A
Q52V09	CYC_TARBA	No assigned EC number	0.7888	0.9782	0.8571	N/A	N/A
P00040	CYC_SCHGR	No assigned EC number	0.7802	0.9891	0.8425	N/A	N/A
P00022	CYC_CHESE	No assigned EC number	0.8	0.9782	0.8571	N/A	N/A
P00008	CYC_RABIT	No assigned EC number	0.8	0.9782	0.8571	yes	N/A
P99998	CYC_PANTR	No assigned EC number	0.7692	0.9891	0.8666	yes	N/A
P99999	CYC_HUMAN	No assigned EC number	0.7692	0.9891	0.8666	yes	N/A
P00024	CYC_LITCT	No assigned EC number	0.8202	0.9673	0.8476	N/A	N/A
P21665	CYC_VARVA	No assigned EC number	0.7777	0.9782	0.8571	N/A	N/A
P81280	CYC_ALLMI	No assigned EC number	0.8222	0.9782	0.8571	N/A	N/A
P62895	CYC_PIG	No assigned EC number	0.8	0.9782	0.8571	yes	N/A
P12831	CYC_SARPE	No assigned EC number	0.8461	0.9891	0.8425	N/A	N/A
P62897	CYC_MOUSE	No assigned EC number	0.8	0.9782	0.8571	yes	N/A
P62896	CYC_SHEEP	No assigned EC number	0.8	0.9782	0.8571	N/A	N/A
P00039	CYC_MANSE	No assigned EC number	0.8021	0.9891	0.8425	N/A	N/A
Q7YR71	CYC_TRACR	No assigned EC number	0.7692	0.9891	0.8666	N/A	N/A
P00012	CYC_MIRLE	No assigned EC number	0.8021	0.9891	0.8666	N/A	N/A
P62898	CYC_RAT	No assigned EC number	0.8	0.9782	0.8571	yes	N/A
P68097	CYC_EQUAS	No assigned EC number	0.8	0.9782	0.8571	N/A	N/A
P68096	CYC_EQUBU	No assigned EC number	0.8	0.9782	0.8571	N/A	N/A
P84030	CYC2_CERCA	No assigned EC number	0.8461	0.9891	0.8425	N/A	N/A
Q5RFH4	CYC_PONAB	No assigned EC number	0.7692	0.9891	0.8666	yes	N/A
P00017	CYC_APTPA	No assigned EC number	0.7777	0.9782	0.8571	N/A	N/A
P00011	CYC_CANFA	No assigned EC number	0.8021	0.9891	0.8666	yes	N/A
P00013	CYC_MINSC	No assigned EC number	0.8021	0.9891	0.8666	N/A	N/A
P00038	CYC_APIME	No assigned EC number	0.8461	0.9891	0.8425	yes	N/A
P00037	CYC_SAMCY	No assigned EC number	0.7802	0.9891	0.8425	N/A	N/A
P00036	CYC_LUCCU	No assigned EC number	0.8351	0.9891	0.8425	N/A	N/A
P00035	CYC_HAEIR	No assigned EC number	0.8241	0.9891	0.8425	N/A	N/A
P00019	CYC_STRCA	No assigned EC number	0.7777	0.9782	0.8571	N/A	N/A
Q6QLW4	CYC_PECGU	No assigned EC number	0.7912	0.9891	0.8348	N/A	N/A
P00018	CYC_DRONO	No assigned EC number	0.7777	0.9782	0.8571	N/A	N/A
P68099	CYC_CAMDR	No assigned EC number	0.7888	0.9782	0.8571	N/A	N/A
P67881	CYC_CHICK	No assigned EC number	0.7888	0.9782	0.8571	yes	N/A
P68100	CYC_ESCGI	No assigned EC number	0.7888	0.9782	0.8571	N/A	N/A
P00029	CYC_ASTRU	No assigned EC number	0.7472	0.9891	0.875	N/A	N/A
P62894	CYC_BOVIN	No assigned EC number	0.8	0.9782	0.8571	yes	N/A
Q640U4	CYC1_XENTR	No assigned EC number	0.7777	0.9782	0.8571	yes	N/A
P68098	CYC_LAMGU	No assigned EC number	0.7888	0.9782	0.8571	N/A	N/A
Q6WUX8	CYC_GORGO	No assigned EC number	0.7692	0.9891	0.8666	N/A	N/A
P84029	CYC2_DROME	No assigned EC number	0.8461	0.9891	0.8425	yes	N/A
B4USV4	CYC_OTOGA	No assigned EC number	0.7666	0.9782	0.8571	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	92
COG3474	135	COG3474, COG3474, Cytochrome c2 [Energy production	1e-46
PTZ00048	115	PTZ00048, PTZ00048, cytochrome c; Provisional	4e-43
PTZ00405	114	PTZ00405, PTZ00405, cytochrome c; Provisional	6e-36
pfam00034	81	pfam00034, Cytochrom_C, Cytochrome c	1e-04

>gnl|CDD|226005 COG3474, COG3474, Cytochrome c2 [Energy production and conversion]

 Score =  144 bits (366), Expect = 1e-46
 Identities = 52/93 (55%), Positives = 65/93 (69%), Gaps = 2/93 (2%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKK--GITWNKDTLFEYLEN 59
           KC  CH+IE GG +KVGP+L G++GR  G   GFSY+ A  K   GI W++D L E+L  
Sbjct: 40  KCQACHSIEKGGPNKVGPHLWGVVGRPAGSVEGFSYSAAMKKAGGGIVWDEDNLDEFLTA 99

Query: 60  PKKYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           PKKY+PGTKM FAG+KK Q+R DLIAYL+    
Sbjct: 100 PKKYVPGTKMAFAGLKKDQDRADLIAYLKSLPS 132

Length = 135

>gnl|CDD|185414 PTZ00048, PTZ00048, cytochrome c; Provisional

 Score =  135 bits (342), Expect = 4e-43
 Identities = 60/91 (65%), Positives = 69/91 (75%), Gaps = 1/91 (1%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHTI  GGA K GPNLHG  GRK+G +  F Y++AN   GI W+   LFEYL NPK
Sbjct: 25  KCAQCHTINKGGAVKQGPNLHGFYGRKSG-SADFPYSDANKNSGIVWSDKHLFEYLVNPK 83

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
            YIPGTKM+FAGIKK +ER DLIAYL++AS 
Sbjct: 84  LYIPGTKMVFAGIKKEKERADLIAYLKEASS 114

Length = 115

>gnl|CDD|173596 PTZ00405, PTZ00405, cytochrome c; Provisional

 Score =  117 bits (294), Expect = 6e-36
 Identities = 52/87 (59%), Positives = 66/87 (75%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           + AQCHT   GG++ VGPNL G++ RK+G   GF+Y++AN   G+ W  + L  YLENPK
Sbjct: 24  RAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVIWTPEVLDVYLENPK 83

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLE 88
           K++PGTKM FAGIKKPQER D+IAYLE
Sbjct: 84  KFMPGTKMSFAGIKKPQERADVIAYLE 110

Length = 114

>gnl|CDD|215669 pfam00034, Cytochrom_C, Cytochrome c

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 18/87 (20%), Positives = 22/87 (25%), Gaps = 17/87 (19%)

Query: 1  MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
            CA CH  +  GA   GP L G        A     + A                    
Sbjct: 8  ANCAACHGADGKGAGG-GPALAGAPAGYLLDALAAIKSGARGIGAQAV------------ 54

Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYL 87
                     A     +ER  L AY+
Sbjct: 55 ----MSKAPGNATQLTDEERAALAAYI 77

The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
PTZ00405	114	cytochrome c; Provisional	100.0
COG3474	135	Cytochrome c2 [Energy production and conversion]	100.0
PTZ00048	115	cytochrome c; Provisional	99.97
KOG3453|consensus	110		99.84
PRK14487	217	cbb3-type cytochrome c oxidase subunit II; Provisi	99.64
PRK13617	170	psbV cytochrome c-550; Provisional	99.51
TIGR02603	133	CxxCH_TIGR02603 putative heme-binding domain, Pire	99.48
TIGR00781	232	ccoO cytochrome c oxidase, cbb3-type, subunit II.	99.41
TIGR03872	133	cytochrome_MoxG cytochrome c(L), periplasmic. This	99.38
CHL00133	163	psbV photosystem II cytochrome c550; Validated	99.38
PRK14486	294	putative bifunctional cbb3-type cytochrome c oxida	99.38
TIGR03045	159	PS_II_C550 cytochrome c-550. Members of this prote	99.37
PF00034	91	Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cyt	99.35
PRK13620	215	psbV cytochrome c-550; Provisional	99.33
PRK13618	163	psbV cytochrome c-550; Provisional	99.28
PRK13621	170	psbV cytochrome c-550; Provisional	99.24
CHL00183	108	petJ cytochrome c553; Provisional	99.16
TIGR03874	143	4cys_cytochr c-type cytochrome, methanol metabolis	99.16
TIGR03046	155	PS_II_psbV2 photosystem II cytochrome PsbV2. Membe	99.14
PF13442	67	Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type,	99.14
PRK13697	111	cytochrome c6; Provisional	99.12
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	99.11
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	98.93
PRK14486	294	putative bifunctional cbb3-type cytochrome c oxida	98.91
COG2863	121	Cytochrome c553 [Energy production and conversion]	98.87
COG2857	250	CYT1 Cytochrome c1 [Energy production and conversi	98.83
PF02433	226	FixO: Cytochrome C oxidase, mono-heme subunit/FixO	98.68
COG2010	150	CccA Cytochrome c, mono- and diheme variants [Ener	98.63
COG4654	110	Cytochrome c551/c552 [Energy production and conver	98.63
PRK13619	160	psbV cytochrome c-550; Provisional	98.58
PRK14485	712	putative bifunctional cbb3-type cytochrome c oxida	98.47
PRK13622	180	psbV cytochrome c-550; Provisional	98.43
COG2993	227	CcoO Cbb3-type cytochrome oxidase, cytochrome c su	98.41
COG3258	293	Cytochrome c [Energy production and conversion]	97.93
TIGR03791	291	TTQ_mauG tryptophan tryptophylquinone biosynthesis	97.81
PF14495	135	Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC	97.35
PF09098	167	Dehyd-heme_bind: Quinohemoprotein amine dehydrogen	96.92
TIGR03806	317	chp_HNE_0200 conserved hypothetical protein, HNE_0	96.3
COG3258	293	Cytochrome c [Energy production and conversion]	96.2
PF10643	233	Cytochrome-c551: Photosystem P840 reaction-centre	95.97
COG3748	407	Predicted membrane protein [Function unknown]	95.85
COG3245	126	CycB Cytochrome c5 [Energy production and conversi	95.77
PF09086	98	DUF1924: Domain of unknown function (DUF1924); Int	94.87
PF14376	137	Haem_bd: Haem-binding domain	94.61
PF02167	219	Cytochrom_C1: Cytochrome C1 family; InterPro: IPR0	88.8
PF02167	219	Cytochrom_C1: Cytochrome C1 family; InterPro: IPR0	88.49
TIGR02162	386	torC trimethylamine-N-oxide reductase c-type cytoc	87.92
PF07635	59	PSCyt1: Planctomycete cytochrome C; InterPro: IPR0	85.29
PRK15032	390	trimethylamine N-oxide reductase cytochrome c-type	82.37

>PTZ00405 cytochrome c; Provisional

Probab=100.00  E-value=5e-34  Score=174.84  Aligned_cols=91  Identities=57%  Similarity=1.048  Sum_probs=85.8

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|.+||++...+...+||+|.||++|..++.++|.||.++++.+++|+++.|..||.+|+.++||+.|+|.++.+++|++
T Consensus        24 ~C~aCH~~~~~~~~~vGP~L~gv~gR~~g~~~~~~YS~al~~~g~~wd~~~L~~~l~~P~~~~pgt~M~f~gl~~~~dr~  103 (114)
T PTZ00405         24 RAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVIWTPEVLDVYLENPKKFMPGTKMSFAGIKKPQERA  103 (114)
T ss_pred             hhHhhCCCCCCCCCCcCCCccccccCccccccCccccHHHHhccCcCCHHHHHHHHHCHHhhCCCCCCCCCCCCCHHHHH
Confidence            69999998765557899999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             HHHHHHhhccC
Q psy8407          82 DLIAYLEQASK   92 (92)
Q Consensus        82 ~liayL~sl~~   92 (92)
                      +||+||++|+.
T Consensus       104 ~liaYL~sl~~  114 (114)
T PTZ00405        104 DVIAYLETLKD  114 (114)
T ss_pred             HHHHHHHHhcC
Confidence            99999999873

>COG3474 Cytochrome c2 [Energy production and conversion]

Probab=100.00  E-value=4.9e-34  Score=176.20  Aligned_cols=90  Identities=58%  Similarity=1.079  Sum_probs=86.7

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhc--CccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKK--GITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQE   79 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~--~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d   79 (92)
                      .|.+||+++.++...+||+|.+|+||+.++.+||.||.++++.  +++|+++.|..||.+|.+++|||.|.|.++.+++|
T Consensus        40 kC~~CH~i~~~g~nkvGP~L~gVvGR~ags~egf~YS~Amk~~~~g~vWd~~~L~~fL~~Pkk~vpGTkM~faGlkk~~d  119 (135)
T COG3474          40 KCQACHSIEKGGPNKVGPHLWGVVGRPAGSVEGFSYSAAMKKAGGGIVWDEDNLDEFLTAPKKYVPGTKMAFAGLKKDQD  119 (135)
T ss_pred             HHHHhhccccCCCCCCCCccccccCccccccCCcccCHHHHhccCCcccCHHHHHHHHhChhhhCCCcceeecCCCCHHH
Confidence            5999999998778899999999999999999999999999988  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      |+|||+||+++.
T Consensus       120 radlIAYLk~~~  131 (135)
T COG3474         120 RADLIAYLKSLP  131 (135)
T ss_pred             HHHHHHHHHhcc
Confidence            999999999875

>PTZ00048 cytochrome c; Provisional

Probab=99.97  E-value=2.9e-31  Score=162.92  Aligned_cols=89  Identities=67%  Similarity=1.183  Sum_probs=83.8

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|.+||++++.+...+||+|.||++|..++ ++|.|+.+++.+++.|+++.|.+||.||+.++|++.|+|.++.+++|++
T Consensus        25 ~C~~CH~~~~~g~~~~GP~L~Gi~gR~~g~-~~~~ys~~~~~~g~~wt~~~L~~~l~~P~~~~pgt~M~~~gl~~~~~~~  103 (115)
T PTZ00048         25 KCAQCHTINKGGAVKQGPNLHGFYGRKSGS-ADFPYSDANKNSGIVWSDKHLFEYLVNPKLYIPGTKMVFAGIKKEKERA  103 (115)
T ss_pred             hhhhcCCCcCCCCCCcCCcccccccccccC-CCCccchhhhhcccccCHHHHHHHHhCcCccCCCCccCcCCCCCHHHHH
Confidence            699999998766678999999999999988 8999999998889999999999999999999999999999999899999


Q ss_pred             HHHHHHhhcc
Q psy8407          82 DLIAYLEQAS   91 (92)
Q Consensus        82 ~liayL~sl~   91 (92)
                      +||+||++++
T Consensus       104 ~liaYL~s~~  113 (115)
T PTZ00048        104 DLIAYLKEAS  113 (115)
T ss_pred             HHHHHHHHhc
Confidence            9999999985

>KOG3453|consensus

Probab=99.84  E-value=2.1e-21  Score=116.63  Aligned_cols=91  Identities=74%  Similarity=1.263  Sum_probs=85.5

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER   80 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~   80 (92)
                      +.|..||+++..+.-.+||+|.++.+|..+...+|.|+.+++..|+.|.++.|.++|.+|..++||+.|-|.++-...|+
T Consensus        18 ~rc~qch~~~~~~~~k~~p~l~gl~g~~~g~~~~~sy~~a~KnKgV~wgE~tl~eyLenpkkyipGtKmifaGikk~~er   97 (110)
T KOG3453|consen   18 QRCAQCHTVEKGGFHKTGPNLHGLFGRQLGQAAGLSYTDANKNKGVTWGEDTLMEYLENPKKYIPGTKMIFAGIKKKAER   97 (110)
T ss_pred             eeccccccccCCcccccCCcchhhHHHhhccccCcceeecccCCceEEcchhHHHHHhCCCccccccceeecccCchHHH
Confidence            47999999998667789999999999999999999999999999999999999999999999999999999999877999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      .|+|+||.+.+
T Consensus        98 aDlIayl~ka~  108 (110)
T KOG3453|consen   98 ADLIAYLKKAT  108 (110)
T ss_pred             HHHHHHHHHhc
Confidence            99999998754

>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional

Probab=99.64  E-value=3e-16  Score=104.46  Aligned_cols=58  Identities=19%  Similarity=0.239  Sum_probs=48.9

Q ss_pred             CCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHhhccC
Q psy8407          15 HKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG--DLIAYLEQASK   92 (92)
Q Consensus        15 ~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~--~liayL~sl~~   92 (92)
                      .++||||+++++|.                    +.+++..||.||+.++|++.||-...+.+++++  +|.+||+++++
T Consensus       101 ~RtGPDLt~vG~R~--------------------s~~w~~~hl~nP~~v~PgS~MPay~~L~~~~ld~~~~~~~l~~l~~  160 (217)
T PRK14487        101 KRTGPDLARVGGRY--------------------SDEWHRNHLINPRSVVPESNMPAYPWLAENDLDGTDTAEKMTALRV  160 (217)
T ss_pred             CCCCcchhhhhccC--------------------CHHHHHHHHhCcccCCCCCCCCCCcccccccCCHHHHHHHHHHhhh
Confidence            47999999998875                    589999999999999999999954434477766  99999999863

>PRK13617 psbV cytochrome c-550; Provisional

Probab=99.51  E-value=3.2e-14  Score=91.95  Aligned_cols=76  Identities=22%  Similarity=0.292  Sum_probs=56.2

Q ss_pred             CCCccCccccCC-CCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCC---------CCC---
Q psy8407           1 MKCAQCHTIEAG-GAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYI---------PGT---   67 (92)
Q Consensus         1 ~~C~~CH~~~~~-~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~---------p~~---   67 (92)
                      .+|.+||.+.+. ..+.+||+|..+..-.                ...-+.+.|.+||+||+.+.         |+.   
T Consensus        68 ~~C~~CH~~g~T~~n~~vg~dL~~L~aa~----------------p~r~nv~aLv~yikdP~sydg~~s~~e~~P~~~~~  131 (170)
T PRK13617         68 TSCGTCHAGGITKTNQNVGLDPETLALAT----------------PARDNVDALVDYLKDPTSYDGEYSIADLHPSMRSA  131 (170)
T ss_pred             cchhhhccCCCcCCCCCcCCCHHHHhccC----------------CCCCCHHHHHHHHhChHhhcchhhccccCcccccc
Confidence            379999988863 2458999996653211                01236899999999997766         654   


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407          68 -KMIFAGIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        68 -~Mp~~~~~~~~d~~~liayL~sl~~   92 (92)
                       .||-...++++|+++|++||..++|
T Consensus       132 ~imP~~~~LsdeeL~alAayLl~~~k  157 (170)
T PRK13617        132 DLYPAMRDLNDEDLRLMAGYILVAPK  157 (170)
T ss_pred             ccCcccCCCCHHHHHHHHHHHHhccc
Confidence             7885444569999999999998854

>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type

Probab=99.48  E-value=6e-14  Score=87.92  Aligned_cols=23  Identities=43%  Similarity=0.915  Sum_probs=19.6

Q ss_pred             CCccCccccCCCCCCCCCCccCcc
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLI   25 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~   25 (92)
                      +|.+||++++.+ ..+||+|.++.
T Consensus        13 ~C~~CH~~~g~g-~~~gP~L~~~~   35 (133)
T TIGR02603        13 RCYVCHRIGGEG-VDVGPDLTGVG   35 (133)
T ss_pred             HHHHhCCCCCCC-CccCCCccccc
Confidence            599999999754 57899999985

This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).

>TIGR00781 ccoO cytochrome c oxidase, cbb3-type, subunit II

Probab=99.41  E-value=2.9e-13  Score=90.87  Aligned_cols=58  Identities=17%  Similarity=0.230  Sum_probs=43.7

Q ss_pred             CCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHhhcc
Q psy8407          14 AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQ--ERGDLIAYLEQAS   91 (92)
Q Consensus        14 ~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~--d~~~liayL~sl~   91 (92)
                      .+++||||+.+++|.                    +.+|+..||.||+.+.|++.||....+.++  |..++.+.|+.++
T Consensus        99 s~RtGPDLt~vG~R~--------------------s~~wh~~hl~nPr~v~PgSiMP~y~~L~~~~ld~~~~~~~~~~~~  158 (232)
T TIGR00781        99 SKRTGPDLARVGGRY--------------------SDEWHVKHLFDPRSVVPESIMPAYKHLATKKVDVDTAYAEAKTQK  158 (232)
T ss_pred             CCCcCcCcccccccC--------------------CHHHHHHHHhCccccCCCCCCCCCcccccccCCHHHHHHHHHHHH
Confidence            358999999998875                    578999999999999999999943322233  3446677776654

This model describes the monoheme subunit of the cbb3-type cytochrome oxidase, found in a subset of Proteobacterial species. Species having this protein also have CcoN (subunit I, containing copper and two heme groups), CcoP (subunit III, containing two hemes), and CcoQ (essential for incorporation of the prosthetic groups).

>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic

Probab=99.38  E-value=1.4e-12  Score=81.82  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=47.9

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQE   79 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d   79 (92)
                      ++|++||..++.  +.+||+|.+......         .       .-..+.|.+.|.+..    ..+|| |...++++|
T Consensus        53 ~~CAaCHG~~g~--G~~gP~L~~~~~~~~---------~-------~~~~~~l~~~i~~G~----~g~Mp~~~~~Lsdee  110 (133)
T TIGR03872        53 TACSGCHGHLAE--GKLGPGLNDDYWTYP---------K-------NTTDKGLFETIFGGA----NGMMGPQYGNLTLDE  110 (133)
T ss_pred             HhhHHhCCCCCC--CCCCCCCcCcccccC---------C-------cccHHHHHHHHHcCC----CCCCcccccCCCHHH
Confidence            379999999864  457899987432111         0       013455777776542    23686 556677999


Q ss_pred             HHHHHHHHhhccC
Q psy8407          80 RGDLIAYLEQASK   92 (92)
Q Consensus        80 ~~~liayL~sl~~   92 (92)
                      |.+|++||+++++
T Consensus       111 I~aLaaYI~sl~~  123 (133)
T TIGR03872       111 MLQIMAWIRHLYT  123 (133)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999864

This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans.

>CHL00133 psbV photosystem II cytochrome c550; Validated

Probab=99.38  E-value=1.1e-12  Score=84.58  Aligned_cols=74  Identities=15%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             CCCccCccccCC-CCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC-------------CCCC
Q psy8407           1 MKCAQCHTIEAG-GAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK-------------YIPG   66 (92)
Q Consensus         1 ~~C~~CH~~~~~-~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~-------------~~p~   66 (92)
                      ++|++||..... ....+||+|..+.+-.                ....+.++|.+||+||+.             ..++
T Consensus        61 ~~CaaCH~~G~~~~~p~vgl~l~~L~~A~----------------~~r~~~~~Lv~~iknP~~ydg~~~i~~~~~~~K~~  124 (163)
T CHL00133         61 ASCGACHVGGITKTNPNVGLDPEALSLAT----------------PPRDNIEALVDYMKNPTTYDGLESIAEIHPSIKSA  124 (163)
T ss_pred             hhHHHhCCCCCCCCCCCCCCCHHHHhhcC----------------CCcccHHHHHHHHhCcccccchHHHHHhhcccCcc
Confidence            479999963211 1335566666553310                012368999999999987             4566


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407          67 TKMIFAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        67 ~~Mp~~~~~~~~d~~~liayL~sl   90 (92)
                      ..||..+.++++|+++|++||...
T Consensus       125 ~~MPa~~~LsdeEL~aVAaYIl~q  148 (163)
T CHL00133        125 DIFPKMRSLTDEDLYAIAGHILLQ  148 (163)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHhc
Confidence            789955656699999999999754

>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional

Probab=99.38  E-value=7.5e-13  Score=92.47  Aligned_cols=57  Identities=21%  Similarity=0.493  Sum_probs=45.1

Q ss_pred             CCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC----C-CC-------------
Q psy8407          15 HKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA----G-IK-------------   75 (92)
Q Consensus        15 ~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~----~-~~-------------   75 (92)
                      .++||+|+++++|.                    +++|+..+|.||+.+.|++.|| |.    . +.             
T Consensus       101 ~r~GPDL~~vG~r~--------------------~~~w~~~~l~~P~~~~p~s~MP~~~~l~~~~~~~~~~~~~~~~~~~  160 (294)
T PRK14486        101 KRTGPDLARIGGKY--------------------PDAWHYAHFEDPQAVVPRSNMPAYAFLKGKPLDAALTQRKMRALGF  160 (294)
T ss_pred             CCCCCchhhhcccC--------------------CHHHHHHHHhCcccCCCCCCCCCCHHHhhccCcHHHHHHhhhhcCC
Confidence            57899999988775                    6899999999999999999998 21    1 10             


Q ss_pred             --C---------HHHHHHHHHHHhhcc
Q psy8407          76 --K---------PQERGDLIAYLEQAS   91 (92)
Q Consensus        76 --~---------~~d~~~liayL~sl~   91 (92)
                        +         ..|+++|++||++|.
T Consensus       161 py~~~~~~~~~~~~e~~AlvAYl~~L~  187 (294)
T PRK14486        161 PYTDADLAALAGKTEMDAMVAYMQSLG  187 (294)
T ss_pred             CCCHHHHHHhcccHHHHHHHHHHHHhc
Confidence              1         136789999999885

>TIGR03045 PS_II_C550 cytochrome c-550

Probab=99.37  E-value=1.2e-12  Score=84.17  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=52.0

Q ss_pred             CCCccCccccCC-CCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCC-------------CCC
Q psy8407           1 MKCAQCHTIEAG-GAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKY-------------IPG   66 (92)
Q Consensus         1 ~~C~~CH~~~~~-~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~-------------~p~   66 (92)
                      ++|++||..... ....+||+|..+.+-..                ...+.++|..||+||..+             .+.
T Consensus        60 ~~Ca~CH~~G~~~~~p~vgl~l~~L~~A~~----------------~r~~v~~Lv~~iknP~~~dg~~~~~~~hp~~k~~  123 (159)
T TIGR03045        60 TACGTCHVGGITKTNPNVGLDPEALALATP----------------PRDNVEALVDYMKNPTSYDGEESIAELHPSIRSA  123 (159)
T ss_pred             HHHHHhCCCCCCCCCCCCCCChhhHHhcCC----------------CccCHHHHHHHHhCcccccccchhhhcccccCcc
Confidence            379999954321 13466777666543110                123688999999999755             456


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          67 TKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        67 ~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      ..||..+-++++|+++|++||....
T Consensus       124 ~~mP~~~~LsdeEL~avAaYIl~q~  148 (159)
T TIGR03045       124 DIFPKMRNLTDEDLRLIAGHILVQP  148 (159)
T ss_pred             cccCCcCCCCHHHHHHHHHHHHHhc
Confidence            7898665556999999999998764

Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.

>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues

Probab=99.35  E-value=6.9e-15  Score=84.35  Aligned_cols=79  Identities=24%  Similarity=0.326  Sum_probs=41.8

Q ss_pred             CCccCccccCCCCCCC-CCCccCccCCCCCCCCCCcchHHhhhcCccccHH-HHHHHHhCCCCCCCCCCCCCCCCCCHHH
Q psy8407           2 KCAQCHTIEAGGAHKV-GPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKD-TLFEYLENPKKYIPGTKMIFAGIKKPQE   79 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~-GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~-~l~~~i~~P~~~~p~~~Mp~~~~~~~~d   79 (92)
                      +|++||++++.+.... +|+|.++..+....     +...      .|... .+......+........||....++++|
T Consensus        11 ~C~~CH~~~~~~~~~~~~p~l~~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e   79 (91)
T PF00034_consen   11 NCAACHGADGNGDGGGPGPDLTGIGKRYSYD-----WIGR------YITNPEAISPPAHMPDAMPMFPMMPMPKILSDEE   79 (91)
T ss_dssp             HTTTTHBTSTTSSSSSTSHBHTTHTHHBTTH-----HTHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHH
T ss_pred             cChhcCCCCCcCCccccCccccCccccchHH-----HHHH------HHHHHhhhccccchhhccCcccCCcccCCCCHHH
Confidence            6999999997653333 69999987664311     0000      00111 0110000000000112233221456999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      +++|++||+|||
T Consensus        80 ~~~l~ayl~slk   91 (91)
T PF00034_consen   80 IADLAAYLRSLK   91 (91)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhC
Confidence            999999999997

The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....

>PRK13620 psbV cytochrome c-550; Provisional

Probab=99.33  E-value=4.3e-12  Score=84.05  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=54.3

Q ss_pred             CCCccCccccC-C-CCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC-------------
Q psy8407           1 MKCAQCHTIEA-G-GAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP-------------   65 (92)
Q Consensus         1 ~~C~~CH~~~~-~-~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p-------------   65 (92)
                      +.|++|| +.+ . .+..+||+|..+..-.   .+             .++.+.|..||+||+.+.|             
T Consensus       113 ~~Ca~CH-VgG~Tktnp~vgpdLt~LaaAt---pp-------------Rdn~e~Lv~wLkdP~sydg~~siae~HPs~~s  175 (215)
T PRK13620        113 YACGQCH-VGGITKTDPNVGLDPEALALAT---PP-------------RDSVESLVDYLHNPTTYDGEREISELHPSTKS  175 (215)
T ss_pred             hhhhhcc-CCCCCCCCCCCCCCHHHHhccC---CC-------------CCCHHHHHHHHhCccccCCcchhhhcCccccc
Confidence            3699999 543 2 2357899998552111   11             2478999999999999888             


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          66 GTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        66 ~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      +..||-.+.++++|+++|++|+.-..
T Consensus       176 ~d~mP~~r~LtdedL~aIa~~IL~qp  201 (215)
T PRK13620        176 TDIFPKMRNLTEDDLVAISGHILLQP  201 (215)
T ss_pred             cccccccCCCCHHHHHHHHHHHhccc
Confidence            78899665456999999999987543

>PRK13618 psbV cytochrome c-550; Provisional

Probab=99.28  E-value=8.5e-12  Score=80.51  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=52.3

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCC-------------CCCC
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKY-------------IPGT   67 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~-------------~p~~   67 (92)
                      ++|++|| +.  |...++|++.+  ++..-  ++.        ....-+.+.|..||+||..+             .+..
T Consensus        61 ~~Ca~CH-~~--G~~~~~p~~~l--~~~~L--a~a--------~p~rd~v~~l~~yik~P~~~Dg~~~~~~~h~~ik~~~  125 (163)
T PRK13618         61 YACAQCH-AG--GVTKTNQNVGL--EPEAL--ALA--------TPNRDNIEGLVDYMKNPTTYDGEEEISEIHPSIKSAD  125 (163)
T ss_pred             HHHHHhc-CC--CCCCCCCCcCC--Chhhh--ccC--------CCCccCHHHHHHHHhCchhccccchhcccccccCccc
Confidence            3699999 44  34677888774  22211  111        00011578999999999886             6778


Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          68 KMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        68 ~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      .||..+-++|+|+++|++||....
T Consensus       126 ~mP~~~~Lsd~eL~ava~yll~~~  149 (163)
T PRK13618        126 IFTAMRNLTDKDLEAIAGHILVQP  149 (163)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHhcc
Confidence            898666556999999999998654

>PRK13621 psbV cytochrome c-550; Provisional

Probab=99.24  E-value=9.4e-12  Score=80.43  Aligned_cols=41  Identities=22%  Similarity=0.344  Sum_probs=33.7

Q ss_pred             HHHHHHHHhCCCCCCC-----CCCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407          50 KDTLFEYLENPKKYIP-----GTKMIFAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        50 ~~~l~~~i~~P~~~~p-----~~~Mp~~~~~~~~d~~~liayL~sl   90 (92)
                      .++|.+||++|..+.|     +..||....++++|+++|++||...
T Consensus       109 I~~LV~~iknPms~kg~~~~~~~~mps~~~LSdeEL~aIAaYLL~q  154 (170)
T PRK13621        109 IAALVAYQRDPMSYDGSEESYGCRQVPEDWMTDEELQNLAAFILRA  154 (170)
T ss_pred             HHHHHHHhhCCCCCCcccccccccCCccCCCCHHHHHHHHHHHHhh
Confidence            4789999999999876     5667755556699999999999764

>CHL00183 petJ cytochrome c553; Provisional

Probab=99.16  E-value=4.3e-11  Score=72.34  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQE   79 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d   79 (92)
                      ++|++||...   .+.++|++....             ..+... ...+.+.|..+|+++..     .|| |.+.++++|
T Consensus        35 ~~Ca~CHg~g---~~~~~P~~~~~~-------------~~l~~~-~~~~~~~i~~~i~~G~~-----~MP~f~~~Ls~~e   92 (108)
T CHL00183         35 ANCAACHAGG---NNVIMPEKTLKK-------------DALEAN-SMNSIEAITYQVTNGKN-----AMPAFGGRLSDED   92 (108)
T ss_pred             HHHHHHCCCC---CCCCCCCcccCH-------------HHHhhC-cCCCHHHHHHHHHcCcc-----ccccccCCCCHHH
Confidence            3799999953   356788875311             111111 12357889999998752     587 656677999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      +++|++||.++.
T Consensus        93 i~~i~aYi~~~~  104 (108)
T CHL00183         93 IEDVANYVLSQA  104 (108)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999864

>TIGR03874 4cys_cytochr c-type cytochrome, methanol metabolism-related

Probab=99.16  E-value=1.1e-10  Score=73.98  Aligned_cols=68  Identities=21%  Similarity=0.370  Sum_probs=49.0

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCC---CCCCCC-CCCCCCH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYI---PGTKMI-FAGIKKP   77 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~---p~~~Mp-~~~~~~~   77 (92)
                      +|++||..++.|. ...|+|.+...+                    -+.+.|.+.|.+.....   ....|| |...+++
T Consensus        43 ~CAaCHG~dG~G~-~~~P~Lans~v~--------------------~s~~nli~vIl~G~~~~~~~~~~~MPaF~~~LsD  101 (143)
T TIGR03874        43 ECHVCHGPDGMGS-TYAPALKDSVKR--------------------MSYGDFLGVVANGRQNVSAAQNNVMPAFGDNPNV  101 (143)
T ss_pred             HHHHhCCCCCCCC-CCCCCCCCcccc--------------------CCHHHHHHHHHhCCCCCCCCCCCCCCCccccCCc
Confidence            6999999998653 368999753322                    15778888888754321   124698 7677777


Q ss_pred             H-HHHHHHHHHhhc
Q psy8407          78 Q-ERGDLIAYLEQA   90 (92)
Q Consensus        78 ~-d~~~liayL~sl   90 (92)
                      + ||++|+.||+.-
T Consensus       102 ~~eIa~L~~YLR~~  115 (143)
T TIGR03874       102 MCYLDDLYVYLRAR  115 (143)
T ss_pred             HHHHHHHHHHHHhc
Confidence            6 999999999864

This family represents a c-type cytochrome related to (but excluding) cytochrome c-555 of Methylococcus capsulatus. Members contain four invariant Cys residues, including two from a heme-binding motif shared with c-555, and two others.

>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2

Probab=99.14  E-value=4.6e-11  Score=76.48  Aligned_cols=41  Identities=22%  Similarity=0.356  Sum_probs=33.9

Q ss_pred             HHHHHHHHhCCCCCCC-----CCCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407          50 KDTLFEYLENPKKYIP-----GTKMIFAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        50 ~~~l~~~i~~P~~~~p-----~~~Mp~~~~~~~~d~~~liayL~sl   90 (92)
                      .+.|.+||++|..+.+     +..||....++++|+++|++||...
T Consensus        98 I~~Lv~~iknP~s~kG~~~~~~~~mp~~~~LsdeEL~aIAaYLl~q  143 (155)
T TIGR03046        98 IQSLVAYQRDPMSYDGSEESYGCRPVPEDWMDDEEVENLAAFILRA  143 (155)
T ss_pred             HHHHHHHhhCCcccCcccccccccCCcccCCCHHHHHHHHHHHHHh
Confidence            4789999999999876     5667766556699999999999864

Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.

>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A

Probab=99.14  E-value=1.2e-11  Score=68.62  Aligned_cols=54  Identities=33%  Similarity=0.687  Sum_probs=41.2

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||+.+     ..||+|.+.                      .|+++.|..+|.++.     ..|| |...++++|+
T Consensus        13 ~C~~CH~~~-----~~gp~l~~~----------------------~~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~e~   60 (67)
T PF13442_consen   13 NCASCHGPG-----GAGPSLAGK----------------------DWSPEELYNIIRNGR-----GGMPPFGGQLSDEEI   60 (67)
T ss_dssp             HTHHHHGTG-----SSSSTSTHH----------------------HHHHHHHHHHHHHTB-----TTBSCTTTTSTHHHH
T ss_pred             HhHHhcCCC-----ccCccchhh----------------------hhhHHHHHHHHHhCc-----CCCCCCCCCCCHHHH
Confidence            699999933     346888852                      256789999999875     2577 4445679999


Q ss_pred             HHHHHHH
Q psy8407          81 GDLIAYL   87 (92)
Q Consensus        81 ~~liayL   87 (92)
                      ++|++||
T Consensus        61 ~~l~~yi   67 (67)
T PF13442_consen   61 EALAAYI   67 (67)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
Confidence            9999997

...

>PRK13697 cytochrome c6; Provisional

Probab=99.12  E-value=7.3e-11  Score=71.38  Aligned_cols=68  Identities=22%  Similarity=0.312  Sum_probs=45.5

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|.+||..+.. ....||+|....-+..                ..|+.+.|...|+++.     ..|| |.+.++++|+
T Consensus        38 ~C~~CHg~g~~-~~~~~p~l~~~~~~~~----------------~~~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~di   95 (111)
T PRK13697         38 NCASCHAGGKN-LVNAGKTLKKADLEKY----------------GMYSLEAITAQVTNGK-----NAMPAFKDRLSPDQI   95 (111)
T ss_pred             HHHHhCCCCCC-CCCCCCCCCHHHHHhc----------------CCCCHHHHHHHHHcCC-----CCCCCCcCCCCHHHH
Confidence            69999996421 2234676663211110                1356788999998864     3587 5556679999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||.+++
T Consensus        96 ~~l~~Yi~~~~  106 (111)
T PRK13697         96 EDVAAYVLEQA  106 (111)
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=99.11  E-value=2.9e-10  Score=79.05  Aligned_cols=69  Identities=20%  Similarity=0.300  Sum_probs=47.9

Q ss_pred             CCCccCccccCCCCCCC-CCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHH
Q psy8407           1 MKCAQCHTIEAGGAHKV-GPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQ   78 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~-GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~   78 (92)
                      ++|++||..++.|.... .|+|.+......                  -+.+.+.+.|++..    ...|| |...++++
T Consensus       212 ~~Ca~CHG~~G~G~~~~gaP~L~~~~~~y~------------------~~~~~i~~~i~~G~----~g~Mp~~~~~Ls~~  269 (285)
T TIGR00782       212 DNCTTCHGEDGKGLQELGAPNLTDDVWLYG------------------GDLKTITTTITNGR----GGVMPAWGPRLSEA  269 (285)
T ss_pred             ccchhhCCCCCCCCCCCCCCCCCcchhhcC------------------CCHHHHHHHHHhCC----CCCCCCccccCCHH
Confidence            36999999997654334 499987432211                  03556777777643    23688 55566799


Q ss_pred             HHHHHHHHHhhcc
Q psy8407          79 ERGDLIAYLEQAS   91 (92)
Q Consensus        79 d~~~liayL~sl~   91 (92)
                      ||++|++||.+|+
T Consensus       270 ei~~La~Yv~sL~  282 (285)
T TIGR00782       270 QIKALAAYVHSLG  282 (285)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999986

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=98.93  E-value=2.5e-09  Score=74.39  Aligned_cols=70  Identities=24%  Similarity=0.271  Sum_probs=46.2

Q ss_pred             CCccCccccCCCCCCCC-CCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC----CCC-CCCCC-CCCC
Q psy8407           2 KCAQCHTIEAGGAHKVG-PNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK----YIP-GTKMI-FAGI   74 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~G-P~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~----~~p-~~~Mp-~~~~   74 (92)
                      +|++||..++.+  ..| |+|.+.....                  ..+.+.|...|++...    ... ...|| |...
T Consensus       117 ~Ca~CHG~~g~G--~~g~P~L~~~~~~~------------------g~~~~~i~~~i~~G~~~~~~~~~~~~~Mp~~~~~  176 (285)
T TIGR00782       117 WCAQCHGSGAGG--AKGFPNLLDNDWLW------------------GGTLEGIHTTIKHGIRDPDDGDTYVGEMPAFGPL  176 (285)
T ss_pred             HhHHhCCCCCCC--CCCCCCCCCCcccc------------------CCCHHHHHHHHHhCccCcccCCcCCCCCCccccc
Confidence            699999998753  334 8887632111                  0146677777765432    111 24687 5456


Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      ++++|+++|++||+++.
T Consensus       177 LsdeeI~aVaaYv~sl~  193 (285)
T TIGR00782       177 LEEADIKDVASYVMSLS  193 (285)
T ss_pred             cChHHHHHHHHHHHHhc
Confidence            77999999999999875

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional

Probab=98.91  E-value=3.1e-09  Score=74.42  Aligned_cols=67  Identities=21%  Similarity=0.360  Sum_probs=45.8

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.  +..||++..+....                   ...+.+...|++...   +..|| |...++++|+
T Consensus       225 ~Ca~CHg~~g~--G~~gp~p~~~~~~~-------------------~~~~~~~~~I~~G~~---~~~MP~f~~~Lsdeei  280 (294)
T PRK14486        225 NCAACHGDEAQ--GQEGVALNDIDDGD-------------------LPDAAYFGMIKGGSD---AKGMPGFGGDLSDDDI  280 (294)
T ss_pred             HHHHhcCCCCC--CCCCCCccccccCC-------------------CcHHHHHHHHHcCCC---cCCCCcccccCCHHHH
Confidence            69999998864  45677666542211                   134456677877543   24688 5555679999


Q ss_pred             HHHHHHHhhccC
Q psy8407          81 GDLIAYLEQASK   92 (92)
Q Consensus        81 ~~liayL~sl~~   92 (92)
                      .+|++||.+++.
T Consensus       281 ~~LaaYV~sl~~  292 (294)
T PRK14486        281 WAIVAYIRSQKA  292 (294)
T ss_pred             HHHHHHHHhccC
Confidence            999999999863

>COG2863 Cytochrome c553 [Energy production and conversion]

Probab=98.87  E-value=3.1e-09  Score=65.54  Aligned_cols=66  Identities=26%  Similarity=0.349  Sum_probs=45.6

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCC-CCCCCCCCCC-CCCCCCHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP-KKYIPGTKMI-FAGIKKPQE   79 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P-~~~~p~~~Mp-~~~~~~~~d   79 (92)
                      .|++||..++.+....=|.|.+.                        ++++|...|++= .+..++..|- ...-++|+|
T Consensus        34 ~Ca~CHG~~g~~~~~~~P~Lagq------------------------~~~yl~~~L~a~k~g~r~~~vM~~~a~~LsD~D   89 (121)
T COG2863          34 SCAACHGADGNSPAPGYPKLAGQ------------------------SEAYLEKQLKAYKDGKRPGPVMNAIASGLSDED   89 (121)
T ss_pred             hhhhccCCCCCCccCCCCCcCCC------------------------CHHHHHHHHHHHHcCCCCcchHHHHHHhCCHHH
Confidence            49999999976544444666543                        477788777742 2334555674 444456999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      |++|.+|+.+++
T Consensus        90 i~~lAa~~a~~~  101 (121)
T COG2863          90 IADLAAYYAAQK  101 (121)
T ss_pred             HHHHHHHHHhCC
Confidence            999999999876

>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]

Probab=98.83  E-value=8e-09  Score=70.88  Aligned_cols=78  Identities=27%  Similarity=0.284  Sum_probs=55.5

Q ss_pred             CCccCccccCC-CCCCCCC-CccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHH
Q psy8407           2 KCAQCHTIEAG-GAHKVGP-NLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQ   78 (92)
Q Consensus         2 ~C~~CH~~~~~-~~~~~GP-~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~   78 (92)
                      -|..||+..+. .....|+ +|.....+..... .          -....+.++..||+||+...|++.|| +..+. ||
T Consensus       133 ~~~~ch~~~~~~~~~~t~~~~l~p~g~~~~~g~-~----------~~~~~~~~~~~~i~~p~~~k~~~~m~~~~~~t-dq  200 (250)
T COG2857         133 FYARCHGVPDYINSLLTGYVDLPPAGLRTPQGT-S----------YNPYFEGELGIFIADPLKDKPGTYMPGNPALT-DQ  200 (250)
T ss_pred             HHhhcccCCCCcCeeecCCCCCCCcccccCCcc-c----------ccccchhhHhhhccCccccCCcCCCCCChhhH-HH
Confidence            47789999863 2445666 5665555543221 0          12234556999999999999999998 55555 99


Q ss_pred             HHHHHHHHHhhcc
Q psy8407          79 ERGDLIAYLEQAS   91 (92)
Q Consensus        79 d~~~liayL~sl~   91 (92)
                      ++++|++||++++
T Consensus       201 ~~~dlvaYL~~~~  213 (250)
T COG2857         201 EVKDLVAYLKWAA  213 (250)
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999999875

>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []

Probab=98.68  E-value=2.1e-08  Score=67.53  Aligned_cols=56  Identities=25%  Similarity=0.421  Sum_probs=38.8

Q ss_pred             CCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHhhc
Q psy8407          15 HKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIK-KPQERGDLIAYLEQA   90 (92)
Q Consensus        15 ~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~-~~~d~~~liayL~sl   90 (92)
                      .+.||||+.+++|.                    +++|-..-+.||..+.|++.|| |.-+. .+.|..++.+.|+.+
T Consensus       100 kRtGPDLarvG~r~--------------------s~~Wh~~Hl~~Pr~v~p~SiMP~Y~~L~~~~~d~~~~~~~~~~l  157 (226)
T PF02433_consen  100 KRTGPDLARVGGRY--------------------SDDWHLAHLYNPRSVVPGSIMPSYPWLFENKLDGEDIQAKMKAL  157 (226)
T ss_pred             CCcCccHHHHhccC--------------------ChHHHHHHhhChHhhCCCCCCCCChhHhhccCcHHHHHHHHHHH
Confidence            46788888777665                    5778888899999999999999 33232 122445666665554

Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.

>COG2010 CccA Cytochrome c, mono- and diheme variants [Energy production and conversion]

Probab=98.63  E-value=4.1e-08  Score=61.63  Aligned_cols=24  Identities=38%  Similarity=0.616  Sum_probs=16.4

Q ss_pred             CCCccCccccC--CCCCCCCCCccCc
Q psy8407           1 MKCAQCHTIEA--GGAHKVGPNLHGL   24 (92)
Q Consensus         1 ~~C~~CH~~~~--~~~~~~GP~L~~i   24 (92)
                      .+|++||+.+.  .+....||.|.+.
T Consensus        60 ~~C~~CHg~~~~g~~~~~~~~~l~~~   85 (150)
T COG2010          60 GNCAACHGPNLGGAGPLLDGPALAGG   85 (150)
T ss_pred             ccchhccCCCCCCCCCcCcchhhhCC
Confidence            48999999993  2222447888764

>COG4654 Cytochrome c551/c552 [Energy production and conversion]

Probab=98.63  E-value=3.1e-08  Score=59.10  Aligned_cols=72  Identities=17%  Similarity=0.226  Sum_probs=47.7

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC-CCCCCCCCCCHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG-TKMIFAGIKKPQE   79 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~-~~Mp~~~~~~~~d   79 (92)
                      +.|.+||.++.   ..+||++..|..+..+..               =..+.|...|+......-+ -.||.....++.|
T Consensus        33 kgC~~CHq~~v---ktVGPS~kdIAakYag~~---------------~~~~kl~q~i~~g~~g~wg~ipMppqp~~sd~~   94 (110)
T COG4654          33 KGCVACHQPDV---KTVGPSYKDIAAKYAGKA---------------GALAKLAQGIKPGGVGVWGPIPMPPQPAISDAD   94 (110)
T ss_pred             ccchhhccccc---cccCccHHHHHHHHccch---------------hHHHHHHHhccccCcCccccCCCCCcccccchH
Confidence            46999999984   589999999987765321               1345666666643322222 4688664445888


Q ss_pred             HHHHHHHHhhc
Q psy8407          80 RGDLIAYLEQA   90 (92)
Q Consensus        80 ~~~liayL~sl   90 (92)
                      .+.++.|+...
T Consensus        95 a~~~~kwvl~~  105 (110)
T COG4654          95 AKTLAKWVLAF  105 (110)
T ss_pred             HHHHHHHHHhc
Confidence            88888877653

>PRK13619 psbV cytochrome c-550; Provisional

Probab=98.58  E-value=1e-07  Score=61.10  Aligned_cols=75  Identities=23%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCC-----C----C----CCC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKY-----I----P----GTK   68 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~-----~----p----~~~   68 (92)
                      +|++||...   ...++|++.--..-....            +.-.-+-+.|+.|+++|..+     .    |    ...
T Consensus        61 ~Ca~CH~gG---~nk~~Pnl~L~~~~L~~a------------tP~RdnV~aLVdymk~PtsyDG~~~~a~~hpsi~~~di  125 (160)
T PRK13619         61 ECTQCHLQG---KTKTNNNVSLGLEDLAGA------------EPPRDNVLALVDYLKHPTSYDGEDDYSELHPNVSRPDI  125 (160)
T ss_pred             HHHHcccCC---CCCcCCCCCcCHHHHHhc------------CCCcccHHHHHHHHhCCcccccchhhhhhccccccccc
Confidence            699999994   568899877311100000            11122577899999999876     1    1    135


Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          69 MIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        69 Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      ||...-++|+|+.+|.+|+....
T Consensus       126 ~P~mr~LtdedL~~iAg~IL~~p  148 (160)
T PRK13619        126 FPELRNFTEDDLYDVAGYMLVAP  148 (160)
T ss_pred             ccccCCCCHHHHHHHHHHHHhcc
Confidence            66543356999999999987643

>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional

Probab=98.47  E-value=4.1e-07  Score=70.09  Aligned_cols=56  Identities=18%  Similarity=0.309  Sum_probs=41.7

Q ss_pred             CCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-C----CCCCCHHHHHHHHHHHhh
Q psy8407          15 HKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-F----AGIKKPQERGDLIAYLEQ   89 (92)
Q Consensus        15 ~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~----~~~~~~~d~~~liayL~s   89 (92)
                      .+.||||..+++|+                    ++++-..-+.||+.+.|++.|| |    ...++.+++.+-+..++.
T Consensus       587 ~rtgpdl~~~g~~~--------------------~~~wh~~hl~~p~~~~p~s~mp~y~~l~~~~~~~~~~~~~~~~~~~  646 (712)
T PRK14485        587 KRTGPDLAREGGKY--------------------PDSWHYNHMEDPQSTSPGSIMPAYPWLLENELDISDTPAKIKAMQT  646 (712)
T ss_pred             CCcCcchhhhcCCC--------------------ChHHHHHHhcCchhcCCCCCCCCChhhhhCCCChHHHHHHHHHHHh
Confidence            46899999888876                    3577778899999999999998 2    234445666666666665


Q ss_pred             c
Q psy8407          90 A   90 (92)
Q Consensus        90 l   90 (92)
                      +
T Consensus       647 ~  647 (712)
T PRK14485        647 L  647 (712)
T ss_pred             c
Confidence            4

>PRK13622 psbV cytochrome c-550; Provisional

Probab=98.43  E-value=6.9e-07  Score=58.55  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=29.9

Q ss_pred             cHHHHHHHHhCCCCCC---------CC----CCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407          49 NKDTLFEYLENPKKYI---------PG----TKMIFAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~~---------p~----~~Mp~~~~~~~~d~~~liayL~sl   90 (92)
                      +.+.|..++++|..+-         |.    ..||-.+.++|+|+++|.+|+...
T Consensus       104 nv~AIv~yLk~p~tYdg~~~~~e~~p~~~~~~~~p~~~~LsdeEI~~VA~yIl~q  158 (180)
T PRK13622        104 NVLAIVDYIKNPVTYDGVESLLEYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQ  158 (180)
T ss_pred             cHHHHHHHHhcccccCCccchhhccccchhccccccccCCCHHHHHHHHHHHHhC
Confidence            4678889999987432         22    135544456799999999999764

>COG2993 CcoO Cbb3-type cytochrome oxidase, cytochrome c subunit [Energy production and conversion]

Probab=98.41  E-value=1.7e-07  Score=61.96  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=44.0

Q ss_pred             CCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHhhcc
Q psy8407          14 AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIK-KPQERGDLIAYLEQAS   91 (92)
Q Consensus        14 ~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~-~~~d~~~liayL~sl~   91 (92)
                      ..+.||||..+++|.                    +.+|=..-+.||..++|.+.|| |.-+. ++-|++++.+-++.++
T Consensus       101 SKRTGPDLaRVG~ry--------------------S~dWH~~Hl~~PR~vVPeSiMPsY~~L~~~~ld~~d~~~~~~~~r  160 (227)
T COG2993         101 SKRTGPDLARVGGRY--------------------SDDWHRAHLLDPRSVVPESIMPSYPWLFDNKLDVDDIGAELKALR  160 (227)
T ss_pred             CCccCcchhhhcccc--------------------ccHHHHHHccCchhcCccccCcccHHHhcCCCchHHHHHHHHhhc
Confidence            457999999998886                    4667777788999999999999 43332 3447788877777654

>COG3258 Cytochrome c [Energy production and conversion]

Probab=97.93  E-value=1.6e-05  Score=54.89  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=24.6

Q ss_pred             HHHHHHHhCCCCCCCCCCCCCC-----CCCCHHHHHHHHHHHhhccC
Q psy8407          51 DTLFEYLENPKKYIPGTKMIFA-----GIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        51 ~~l~~~i~~P~~~~p~~~Mp~~-----~~~~~~d~~~liayL~sl~~   92 (92)
                      -.+.+||+.        -||+.     .++++||.-||++|+.+..|
T Consensus       215 ~t~A~Fi~~--------nMP~g~~~~~P~Lsd~dA~DiAay~~~~pR  253 (293)
T COG3258         215 NTLARFIKA--------NMPYGFSGTNPILSDQDAWDIAAYVNSQPR  253 (293)
T ss_pred             HHHHHHHHh--------cCCCCcCccCCccChHHHHHHHHHHcCCCC
Confidence            356778763        37742     24789999999999987643

>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG

Probab=97.81  E-value=0.00019  Score=50.47  Aligned_cols=47  Identities=26%  Similarity=0.308  Sum_probs=26.9

Q ss_pred             cCccccHHHHHHHHhCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          44 KGITWNKDTLFEYLENPKKYIPG--TKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        44 ~~~~~~~~~l~~~i~~P~~~~p~--~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      .|...+=+++.++...-....|+  ..+-... ++++|+++||+||+||+
T Consensus       231 dG~~~tL~evv~~y~~~g~~~~~~~~~~~~~~-Lt~~E~~dLvaFL~tLt  279 (291)
T TIGR03791       231 DGQLGSLDAVIDHYEKGGEKRPSISAEMKPFE-LSEREREDLIAFIETLD  279 (291)
T ss_pred             CCCcCCHHHHHHHHHccCccccccccccccCC-CCHHHHHHHHHHHHhcC
Confidence            35555666666655432221121  1111123 45999999999999986

Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.

>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V

Probab=97.35  E-value=0.00015  Score=45.34  Aligned_cols=42  Identities=24%  Similarity=0.446  Sum_probs=25.9

Q ss_pred             cHHHHHHHHhCCCCCC---------CCCCCC--C--CCCCCHHHHHHHHHHHhhc
Q psy8407          49 NKDTLFEYLENPKKYI---------PGTKMI--F--AGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~~---------p~~~Mp--~--~~~~~~~d~~~liayL~sl   90 (92)
                      +-+.|+.|+++|..+-         |...-+  |  ..-++++|+.+|.+||.-.
T Consensus        67 Ni~~LVdYmk~PtsYDG~~~i~e~hp~~~s~di~p~mr~ltdddL~~iAg~IL~~  121 (135)
T PF14495_consen   67 NIEALVDYMKNPTSYDGEESISELHPSIKSADIFPKMRNLTDDDLYAIAGYILRQ  121 (135)
T ss_dssp             SHHHHHHHHHS-B-TTSSSBGTTTS-STTCTTTSGGGTS--HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhhCCCCcCCchhHHHhCcCcccchhhHhhcCCCHHHHHHHHHHHHhc
Confidence            6789999999997642         222112  2  2234699999999999753

...

>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1

Probab=96.92  E-value=0.00039  Score=45.00  Aligned_cols=15  Identities=33%  Similarity=0.700  Sum_probs=10.2

Q ss_pred             CCHHHHHHHHHHHhh
Q psy8407          75 KKPQERGDLIAYLEQ   89 (92)
Q Consensus        75 ~~~~d~~~liayL~s   89 (92)
                      ++++|+.+||.||..
T Consensus        51 Is~eer~avVkYLAd   65 (167)
T PF09098_consen   51 ISPEERRAVVKYLAD   65 (167)
T ss_dssp             --HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            348888888888853

4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.

>TIGR03806 chp_HNE_0200 conserved hypothetical protein, HNE_0200 family

Probab=96.30  E-value=0.011  Score=42.08  Aligned_cols=26  Identities=15%  Similarity=0.295  Sum_probs=19.9

Q ss_pred             CCCCCCCCC--CCCHHHHHHHHHHHhhc
Q psy8407          65 PGTKMIFAG--IKKPQERGDLIAYLEQA   90 (92)
Q Consensus        65 p~~~Mp~~~--~~~~~d~~~liayL~sl   90 (92)
                      ++..||..+  +..+++++-|-+||.+|
T Consensus       290 ~~~~MPp~G~~l~~~e~vaLI~~WI~~l  317 (317)
T TIGR03806       290 PGVRMPELGRSLVHQEGLALIRQWIASL  317 (317)
T ss_pred             ccccCCcCCCCCCCHHHHHHHHHHHHhC
Confidence            456798654  56568999999999875

The model TIGR03805 describes an uncharacterized protein family that contains repeats associated with the formation of a right-handed helical stack of parallel beta strands, homologous to those found in a number of carbohydrate-binding proteins and sugar hydrolases. This model describes another uncharacterized protein family, found in the same species as TIGR03805 member proteins, usually as the adjacent gene or in a fusion protein. An example is HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes two members of this family are with a single member of TIGR03805. The function is unknown.

>COG3258 Cytochrome c [Energy production and conversion]

Probab=96.20  E-value=0.01  Score=41.29  Aligned_cols=73  Identities=14%  Similarity=0.266  Sum_probs=40.4

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|.+||...+.  ...+-+|.+++++...    |.    .+.-.++.-++.|.--+...   ..|..||    .+.-|++
T Consensus        64 ~C~sCHl~~Gt--~~~~~p~vgv~~~yPq----y~----~r~~kvitledRInGcf~~s---~nGk~~p----aDspEmk  126 (293)
T COG3258          64 NCVSCHLNAGT--KPYSSPFVGVYNKYPQ----YD----IRTMKVITLEDRINGCFERS---TNGKPLP----ADSPEMK  126 (293)
T ss_pred             ceeecccccCc--CcCCcchhheeccccc----cC----cccCceeeHHHHHHHHhhcC---CCCCCCC----CCCHHHH
Confidence            79999998853  3456667777766421    11    00011222244444333211   1233455    2358999


Q ss_pred             HHHHHHhhcc
Q psy8407          82 DLIAYLEQAS   91 (92)
Q Consensus        82 ~liayL~sl~   91 (92)
                      +|++|++-|+
T Consensus       127 AmlaY~kWL~  136 (293)
T COG3258         127 AMLAYMKWLK  136 (293)
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms

Probab=95.97  E-value=0.0019  Score=43.41  Aligned_cols=20  Identities=20%  Similarity=0.486  Sum_probs=14.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHhh
Q psy8407          69 MIFAGIKKPQERGDLIAYLEQ   89 (92)
Q Consensus        69 Mp~~~~~~~~d~~~liayL~s   89 (92)
                      ||..++. ++|...|+.||..
T Consensus       212 ~PnSgIt-~eDa~~I~~YLne  231 (233)
T PF10643_consen  212 VPNSGIT-DEDAPQIMMYLNE  231 (233)
T ss_dssp             STT-----HHHHHHHHHHHHH
T ss_pred             CCCCCCC-HHHHHHHHHHHHh
Confidence            5666776 9999999999975

The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.

>COG3748 Predicted membrane protein [Function unknown]

Probab=95.85  E-value=0.0085  Score=42.96  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=38.1

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhC--CCCCCCCCCCCCC---CCCC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLEN--PKKYIPGTKMIFA---GIKK   76 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~--P~~~~p~~~Mp~~---~~~~   76 (92)
                      +|..||+.+..-.+...|+..-..+                      ++++|...-+.  -+.. ....||..   ++. 
T Consensus       334 rCs~CHaa~P~~e~~~~~p~gv~ld----------------------t~~~iaa~A~~Iy~qA~-~s~~MP~gNvt~mT-  389 (407)
T COG3748         334 RCSMCHAAEPTWEGISAPPKGVMLD----------------------TDEQIAAHAREIYLQAG-RSHAMPPGNVTQMT-  389 (407)
T ss_pred             hhhhhhcCCCcccccccCCCceeec----------------------CHHHHHHHHHHHHHHHH-HhccCCCcccccCC-
Confidence            6999999987544455555433222                      34555433221  0111 13568743   454 


Q ss_pred             HHHHHHHHHHHhhc
Q psy8407          77 PQERGDLIAYLEQA   90 (92)
Q Consensus        77 ~~d~~~liayL~sl   90 (92)
                      |||++-|.+|+++-
T Consensus       390 ~eER~ll~aW~e~~  403 (407)
T COG3748         390 DEERALLAAWFESG  403 (407)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999864

>COG3245 CycB Cytochrome c5 [Energy production and conversion]

Probab=95.77  E-value=0.04  Score=33.98  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=18.1

Q ss_pred             CCCCCCCC---CCHHHHHHHHHHHhhc
Q psy8407          67 TKMIFAGI---KKPQERGDLIAYLEQA   90 (92)
Q Consensus        67 ~~Mp~~~~---~~~~d~~~liayL~sl   90 (92)
                      ..||..+.   .||+|+++.|.|+...
T Consensus        98 nAMPpkG~ca~cSdDe~kAaId~M~~~  124 (126)
T COG3245          98 NAMPPKGGCADCSDDEVKAAIDFMAAA  124 (126)
T ss_pred             cCCCCCCCcCCCCHHHHHHHHHHHHhc
Confidence            45886542   4699999999998754

>PF09086 DUF1924: Domain of unknown function (DUF1924); InterPro: IPR015170 This entry is found in a set of bacterial proteins, including Cytochrome c-type protein

Probab=94.87  E-value=0.008  Score=35.79  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=18.6

Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy8407          49 NKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYL   87 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL   87 (92)
                      +.+.+.+|++.--..+      +..-=+.+|-.|+++||
T Consensus        66 D~~kVEKwf~RNC~dv------lgReCTa~EKgD~l~yl   98 (98)
T PF09086_consen   66 DAAKVEKWFKRNCNDV------LGRECTAQEKGDVLAYL   98 (98)
T ss_dssp             SHHHHHHHHHHHHHHH------HSS---HHHHHHHHHHH
T ss_pred             CHHHHHHHHHccchhh------hcccCCHHHhcchheeC
Confidence            5667777776211000      11123589999999998

It is functionally uncharacterised. ; PDB: 1DW2_C 1DW1_A 1DW3_C 1DW0_A 1OAE_A 1GU2_B 1E8E_A.

>PF14376 Haem_bd: Haem-binding domain

Probab=94.61  E-value=0.027  Score=35.43  Aligned_cols=17  Identities=12%  Similarity=0.358  Sum_probs=14.6

Q ss_pred             CCCHHHHHHHHHHHhhc
Q psy8407          74 IKKPQERGDLIAYLEQA   90 (92)
Q Consensus        74 ~~~~~d~~~liayL~sl   90 (92)
                      .++++|++.|++|+++.
T Consensus       120 ~Ls~~ek~~Ll~Wi~~~  136 (137)
T PF14376_consen  120 KLSEEEKQALLNWIKEQ  136 (137)
T ss_pred             CCCHHHHHHHHHHHHHc
Confidence            45699999999999864

>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes

Probab=88.80  E-value=0.13  Score=34.95  Aligned_cols=42  Identities=29%  Similarity=0.503  Sum_probs=25.5

Q ss_pred             cHHHHHHHHh----CCCC-----------CCCC--CCCCC---CC---------CCCHHHHHHHHHHHhhc
Q psy8407          49 NKDTLFEYLE----NPKK-----------YIPG--TKMIF---AG---------IKKPQERGDLIAYLEQA   90 (92)
Q Consensus        49 ~~~~l~~~i~----~P~~-----------~~p~--~~Mp~---~~---------~~~~~d~~~liayL~sl   90 (92)
                      ..++|+.+|+    +|.+           +.|+  ..||.   .+         -.-+|.++||++||...
T Consensus       112 G~dyiys~L~gy~~~p~~~~~~~~~~~N~~fpg~~iaMP~~L~~~~v~y~dGt~at~~q~a~DVv~FL~w~  182 (219)
T PF02167_consen  112 GADYIYSLLTGYYEDPAGVSVRPGGYYNPYFPGGAIAMPPPLSDGQVEYDDGTPATVDQMAKDVVNFLAWA  182 (219)
T ss_dssp             HHHHHHHHHCTBSS--TTGTTSTTSEEETTSTTSEESS--TSSTTSS-BTTTB---HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHhccCCCcccccCCCCCccccccCCCcccchhhhhhhcccccCCCcchHHHHHHHHHHHHHHH
Confidence            5788988885    5652           4567  67872   11         11267889999999754

It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....

>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes

Probab=88.49  E-value=1.9  Score=29.30  Aligned_cols=9  Identities=44%  Similarity=1.309  Sum_probs=6.8

Q ss_pred             CCccCcccc
Q psy8407           2 KCAQCHTIE   10 (92)
Q Consensus         2 ~C~~CH~~~   10 (92)
                      .|++||++.
T Consensus        25 ~C~~CHsl~   33 (219)
T PF02167_consen   25 VCASCHSLK   33 (219)
T ss_dssp             TGGGTSBCT
T ss_pred             HHhhccccc
Confidence            588888854

It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....

>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC

Probab=87.92  E-value=0.4  Score=35.20  Aligned_cols=20  Identities=15%  Similarity=0.346  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy8407          70 IFAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        70 p~~~~~~~~d~~~liayL~sl   90 (92)
                      +|..|. ++|.+-|+.||+.-
T Consensus       358 ~~t~l~-~~e~~lv~~YLQ~h  377 (386)
T TIGR02162       358 GFTNLD-KEQERLVLRYLQMH  377 (386)
T ss_pred             hhcCCC-HHHHHHHHHHHHHh
Confidence            567765 99999999999864

This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.

>PF07635 PSCyt1: Planctomycete cytochrome C; InterPro: IPR011429 These proteins share a region of homology at their N terminus that contains the C-{CPWHF}-{CPWR}-C-H-{CFYW} motif typical of cytochrome c

Probab=85.29  E-value=0.53  Score=25.20  Aligned_cols=10  Identities=30%  Similarity=0.816  Sum_probs=8.5

Q ss_pred             CccCccccCC
Q psy8407           3 CAQCHTIEAG   12 (92)
Q Consensus         3 C~~CH~~~~~   12 (92)
                      |..||+-+..
T Consensus         1 C~~CHg~~~~   10 (59)
T PF07635_consen    1 CFSCHGPDKQ   10 (59)
T ss_pred             CcCCCCCCCc
Confidence            9999998853

>PRK15032 trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional

Probab=82.37  E-value=1  Score=33.17  Aligned_cols=20  Identities=25%  Similarity=0.489  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy8407          70 IFAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        70 p~~~~~~~~d~~~liayL~sl   90 (92)
                      .|..+. ++|.+-|+.||+.-
T Consensus       355 ~~t~ld-~~e~~ll~kYLQ~h  374 (390)
T PRK15032        355 GFTSLD-KREERTLLKYLQMN  374 (390)
T ss_pred             hccCCC-HHHHHHHHHHHHHh
Confidence            455655 88999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	92
1giw_A	104	Solution Structure Of Reduced Horse Heart Cytochrom		1e-38
1crc_A	105	Cytochrome C At Low Ionic Strength Length = 105		1e-38
2pcb_B	104	Crystal Structure Of A Complex Between Electron Tra		1e-38
2b4z_A	104	Crystal Structure Of Cytochrome C From Bovine Heart		2e-38
1j3s_A	104	Solution Structure Of Reduced Recombinant Human Cyt		2e-38
3nwv_A	104	Human Cytochrome C G41s Length = 104		7e-38
3cyt_O	104	Redox Conformation Changes In Refined Tuna Cytochro		2e-37
1i54_A	103	Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins		2e-37
2aiu_A	105	Crystal Structure Of Mouse Testicular Cytochrome C		3e-37
1cyc_A	103	The Crystal Structure Of Bonito (Katsuo) Ferrocytoc		7e-37
1u74_B	108	Electron Transfer Complex Between Cytochrome C And		6e-33
1s6v_B	108	Structure Of A Cytochrome C Peroxidase-Cytochrome C		1e-32
1nmi_A	108	Solution Structure Of The Imidazole Complex Of Iso-		1e-32
1yic_A	108	The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochr		2e-32
1yfc_A	108	Solution Nmr Structure Of A Yeast Iso-1-Ferrocytoch		2e-32
2pcc_B	108	Crystal Structure Of A Complex Between Electron Tra		2e-32
2jti_B	108	Solution Structure Of The Yeast Iso-1-Cytochrome C		3e-32
2ycc_A	108	Oxidation State-Dependent Conformational Changes In		4e-32
1csw_A	108	Replacements In A Conserved Leucine Cluster In The		5e-32
2jqr_A	108	Solution Model Of Crosslinked Complex Of Cytochrome		6e-32
2b12_B	108	Crystal Structure Of The Protein-Protein Complex Be		6e-32
1fhb_A	108	Three-Dimensional Solution Structure Of The Cyanide		7e-32
1csv_A	108	Replacements In A Conserved Leucine Cluster In The		7e-32
3cxh_W	112	Structure Of Yeast Complex Iii With Isoform-2 Cytoc		7e-32
1irv_A	108	Cytochrome C Isozyme 1, Reduced, Mutant With Ile 75		8e-32
1kyo_W	108	Yeast Cytochrome Bc1 Complex With Bound Substrate C		9e-32
1chj_A	108	Structural Studies Of The Roles Of Residues 82 And		1e-31
1cty_A	108	Mutation Of Tyrosine-67 In Cytochrome C Significant		1e-31
1chh_A	108	Structural Studies Of The Roles Of Residues 82 And		1e-31
2b11_B	108	Crystal Structure Of The Protein-Protein Complex Be		1e-31
1csu_A	108	Replacements In A Conserved Leucine Cluster In The		1e-31
2b0z_B	108	Crystal Structure Of The Protein-Protein Complex Be		1e-31
1raq_A	108	The Structure And Function Of Omega Loop A Replacem		2e-31
1lms_A	108	Structural Model For An Alkaline Form Of Ferricytoc		2e-31
2b10_B	108	Crystal Structure Of The Protein-Protein Complex Be		2e-31
1csx_A	108	Replacements In A Conserved Leucine Cluster In The		2e-31
1chi_A	108	Structural Studies Of The Roles Of Residues 82 And		2e-31
1irw_A	108	Cytochrome C Isozyme 1, Reduced, Mutant With Asn 52		3e-31
1rap_A	108	The Structure And Function Of Omega Loop A Replacem		5e-31
2lir_A	108	Nmr Solution Structure Of Yeast Iso-1-Cytochrome C		5e-31
1yeb_A	108	Structure Determination And Analysis Of Yeast Iso-2		5e-31
1crg_A	108	The Role Of A Conserved Internal Water Molecule And		6e-31
1ytc_A	112	Thermodynamic Cycles As Probes Of Structure-Functio		1e-30
1crh_A	108	The Role Of A Conserved Internal Water Molecule And		1e-30
1cri_A	108	The Role Of A Conserved Internal Water Molecule And		1e-30
1ccr_A	112	Structure Of Rice Ferricytochrome C At 2.0 Angstrom		3e-30
1cif_A	108	Structural And Functional Effects Of Multiple Mutat		4e-30
1cig_A	108	Structural And Functional Effects Of Multiple Mutat		5e-30
1cie_A	108	Structural And Functional Effects Of Multiple Mutat		6e-30
1cih_A	108	Structural And Functional Effects Of Multiple Mutat		5e-29
2yk3_A	114	Crithidia Fasciculata Cytochrome C Length = 114		3e-28
4dy9_A	113	Leishmania Major Peroxidase Is A Cytochrome C Perox		2e-27
1hro_A	106	Molecular Structure Of A High Potential Cytochrome		9e-25
1co6_A	107	Crystal Structure Of Ferrocytochrome C2 From Rhodop		3e-23
1qn2_A	100	Cytochrome Ch From Methylobacterium Extorquens Leng		9e-18
3m97_X	140	Structure Of The Soluble Domain Of Cytochrome C552		3e-16
1c7m_A	100	Solution Structure Of The Functional Domain Of Para		3e-16
1ql3_A	99	Structure Of The Soluble Domain Of Cytochrome C552		4e-16
2c2c_A	112	Refinement Of The Crystal Structure Of Oxidized Rho		8e-12
1jdl_A	121	Structure Of Cytochrome C2 From Rhodospirillum Cent		1e-11
1hh7_A	114	Refined Crystal Structure Of Cytochrome C2 From Rho		1e-09
1cot_A	129	X-Ray Structure Of The Cytochrome C2 Isolated From		2e-09
155c_A	135	The Structure Of Paracoccus Denitrificans Cytochrom		5e-09
2bgv_X	134	X-Ray Structure Of Ferric Cytochrome C-550 From Par		2e-08
2bh4_X	134	X-Ray Structure Of The M100k Variant Of Ferric Cyt		1e-07
2cxb_A	124	Crystallization And X-Ray Structure Determination O		4e-07
1c2n_A	137	Cytochrome C2, Nmr, 20 Structures Length = 137		3e-06
1vyd_A	116	Crystal Structure Of Cytochrome C2 Mutant G95e Leng		3e-06
1c2r_A	116	Molecular Structure Of Cytochrome C2 Isolated From		3e-06

>pdb|1GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C, Nmr, Minimized Average Structure Length = 104

Iteration: 1
 Score =  154 bits (389), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/90 (78%), Positives = 79/90 (87%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HK GPNLHGL GRKTGQAPGF+YT+AN  KGITW ++TL EYLENPK
Sbjct: 13  KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPK 72
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKMIFAGIKK  ER DLIAYL++A+
Sbjct: 73  KYIPGTKMIFAGIKKKTEREDLIAYLKKAT 102

>pdb|1CRC|A Chain A, Cytochrome C At Low Ionic Strength Length = 105

Iteration: 1
 Score =  154 bits (388), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/90 (78%), Positives = 79/90 (87%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HK GPNLHGL GRKTGQAPGF+YT+AN  KGITW ++TL EYLENPK
Sbjct: 14  KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPK 73
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKMIFAGIKK  ER DLIAYL++A+
Sbjct: 74  KYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103

>pdb|2PCB|B Chain B, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 104

Iteration: 1
 Score =  154 bits (388), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/90 (78%), Positives = 79/90 (87%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HK GPNLHGL GRKTGQAPGF+YT+AN  KGITW ++TL EYLENPK
Sbjct: 13  KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPK 72
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKMIFAGIKK  ER DLIAYL++A+
Sbjct: 73  KYIPGTKMIFAGIKKKTEREDLIAYLKKAT 102

>pdb|2B4Z|A Chain A, Crystal Structure Of Cytochrome C From Bovine Heart At 1.5 A Resolution. Length = 104

Iteration: 1
 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/90 (80%), Positives = 79/90 (87%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HK GPNLHGL GRKTGQAPGFSYT+AN  KGITW ++TL EYLENPK
Sbjct: 13  KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPK 72
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKMIFAGIKK  ER DLIAYL++A+
Sbjct: 73  KYIPGTKMIFAGIKKKGEREDLIAYLKKAT 102

>pdb|1J3S|A Chain A, Solution Structure Of Reduced Recombinant Human Cytochrome C Length = 104

Iteration: 1
 Score =  153 bits (387), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 78/91 (85%)
Query: 1   MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
           MKC+QCHT+E GG HK GPNLHGL GRKTGQAPG+SYT AN  KGI W +DTL EYLENP
Sbjct: 12  MKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENP 71
Query: 61  KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KKYIPGTKMIF GIKK +ER DLIAYL++A+
Sbjct: 72  KKYIPGTKMIFVGIKKKEERADLIAYLKKAT 102

>pdb|3NWV|A Chain A, Human Cytochrome C G41s Length = 104

Iteration: 1
 Score =  151 bits (382), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 77/91 (84%)
Query: 1   MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
           MKC+QCHT+E GG HK GPNLHGL GRKT QAPG+SYT AN  KGI W +DTL EYLENP
Sbjct: 12  MKCSQCHTVEKGGKHKTGPNLHGLFGRKTSQAPGYSYTAANKNKGIIWGEDTLMEYLENP 71
Query: 61  KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KKYIPGTKMIF GIKK +ER DLIAYL++A+
Sbjct: 72  KKYIPGTKMIFVGIKKKEERADLIAYLKKAT 102

>pdb|3CYT|O Chain O, Redox Conformation Changes In Refined Tuna Cytochrome C Length = 104

Iteration: 1
 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 76/90 (84%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HKVGPNL GL GRKTGQA G+SYT+AN  KGI WN DTL EYLENPK
Sbjct: 14  KCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPK 73
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKMIFAGIKK  ER DL+AYL+ A+
Sbjct: 74  KYIPGTKMIFAGIKKKGERQDLVAYLKSAT 103

>pdb|1I54|A Chain A, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins Length = 103

Iteration: 1
 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 76/90 (84%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HKVGPNL GL GRKTGQA G+SYT+AN  KGI WN DTL EYLENPK
Sbjct: 13  KCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPK 72
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKMIFAGIKK  ER DL+AYL+ A+
Sbjct: 73  KYIPGTKMIFAGIKKKGERQDLVAYLKSAT 102

>pdb|2AIU|A Chain A, Crystal Structure Of Mouse Testicular Cytochrome C At 1.6 Angstrom Length = 105

Iteration: 1
 Score =  149 bits (377), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 69/90 (76%), Positives = 77/90 (85%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HK GPNL GL GRKTGQAPGFSYT+AN  KG+ W+++TL EYLENPK
Sbjct: 14  KCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWSEETLMEYLENPK 73
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKMIFAGIKK  ER DLI YL+QA+
Sbjct: 74  KYIPGTKMIFAGIKKKSEREDLIKYLKQAT 103

>pdb|1CYC|A Chain A, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C At 2.3 Angstroms Resolution. Ii. Structure And Function Length = 103

Iteration: 1
 Score =  148 bits (374), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/90 (76%), Positives = 77/90 (85%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HKVGPNL GL GRKTGQA G+SYT+AN  KGI WN++TL EYLENPK
Sbjct: 13  KCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNENTLMEYLENPK 72
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKMIFAGIKK  ER DL+AYL+ A+
Sbjct: 73  KYIPGTKMIFAGIKKKGERQDLVAYLKSAT 102

>pdb|1U74|B Chain B, Electron Transfer Complex Between Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  135 bits (340), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 75/91 (82%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++AS+
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKASE 108

>pdb|1S6V|B Chain B, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site Specific Cross-Link Length = 108

Iteration: 1
 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 75/91 (82%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMCFGGLKKEKDRNDLITYLKKATE 108

>pdb|1NMI|A Chain A, Solution Structure Of The Imidazole Complex Of Iso-1 Cytochrome C Length = 108

Iteration: 1
 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 75/91 (82%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108

>pdb|1YIC|A Chain A, The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochrome C, Nmr, 20 Structures Length = 108

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 74/91 (81%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++AS+
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKASE 108

>pdb|1YFC|A Chain A, Solution Nmr Structure Of A Yeast Iso-1-Ferrocytochrome C Length = 108

Iteration: 1
 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 74/91 (81%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++AS+
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKASE 108

>pdb|2PCC|B Chain B, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 108

Iteration: 1
 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 73/89 (82%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|2JTI|B Chain B, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a) : Yeast Cytochrome C Peroxidase Complex Length = 108

Iteration: 1
 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 73/89 (82%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|2YCC|A Chain A, Oxidation State-Dependent Conformational Changes In Cytochrome C Length = 108

Iteration: 1
 Score =  132 bits (333), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 74/91 (81%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108

>pdb|1CSW|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 74/91 (81%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGMKKEKDRNDLITYLKKATE 108

>pdb|2JQR|A Chain A, Solution Model Of Crosslinked Complex Of Cytochrome C And Adrenodoxin Length = 108

Iteration: 1
 Score =  132 bits (332), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 74/91 (81%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HK GPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKCGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108

>pdb|2B12|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82y Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  132 bits (331), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 73/89 (82%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM + G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMAYGGLKKEKDRNDLITYLKKA 106

>pdb|1FHB|A Chain A, Three-Dimensional Solution Structure Of The Cyanide Adduct Of A Met80ala Variant Of Saccharomyces Cerevisiae Iso-1- Cytochrome C. Identification Of Ligand-Residue Interactions In The Distal Heme Cavity Length = 108

Iteration: 1
 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 74/91 (81%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR++GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRQSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTK  F G+KK ++R DLI YL++AS+
Sbjct: 78  KYIPGTKAAFGGLKKEKDRNDLITYLKKASE 108

>pdb|1CSV|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGFKKEKDRNDLITYLKKATE 108

>pdb|3CXH|W Chain W, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C Bound And Definition Of A Minimal Core Interface For Electron Transfer. Length = 112

Iteration: 1
 Score =  131 bits (330), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHTIE GG +KVGPNLHG+ GR +GQ  G+SYT+ANI K + W++D++ EYL NP 
Sbjct: 22  RCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDEDSMSEYLTNPX 81
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM FAG+KK ++R DLI Y+ +A+K
Sbjct: 82  KYIPGTKMAFAGLKKEKDRNDLITYMTKAAK 112

>pdb|1IRV|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Ile 75 Replaced By Met And Cys 102 Replaced By Thr Length = 108

Iteration: 1
 Score =  131 bits (330), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 74/91 (81%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KY+PGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYMPGTKMAFGGLKKEKDRNDLITYLKKATE 108

>pdb|1KYO|W Chain W, Yeast Cytochrome Bc1 Complex With Bound Substrate Cytochrome C Length = 108

Iteration: 1
 Score =  131 bits (330), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|1CHJ|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At The Interactive Face Of Cytochrome C Length = 108

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGAKKEKDRNDLITYLKKATE 108

>pdb|1CTY|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly Alters The Local Heme Environment Length = 108

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 74/91 (81%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + E+L NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEFLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108

>pdb|1CHH|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At The Interactive Face Of Cytochrome C Length = 108

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 74/91 (81%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM + G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAYGGLKKEKDRNDLITYLKKATE 108

>pdb|2B11|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82w Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 73/89 (82%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM + G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMAWGGLKKEKDRNDLITYLKKA 106

>pdb|1CSU|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGCKKEKDRNDLITYLKKATE 108

>pdb|2B0Z|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82i Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM   G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMAIGGLKKEKDRNDLITYLKKA 106

>pdb|1RAQ|A Chain A, The Structure And Function Of Omega Loop A Replacements In Cytochrome C Length = 108

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 73/89 (82%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT++ GGA+KVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|1LMS|A Chain A, Structural Model For An Alkaline Form Of Ferricytochrome C Length = 108

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPA 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGT M F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTAMAFGGLKKEKDRNDLITYLKKATE 108

>pdb|2B10|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82s Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM   G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMASGGLKKEKDRNDLITYLKKA 106

>pdb|1CSX|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R D I YL++A++
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDSITYLKKATE 108

>pdb|1CHI|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At The Interactive Face Of Cytochrome C Length = 108

Iteration: 1
 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM + G KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAYGGAKKEKDRNDLITYLKKATE 108

>pdb|1IRW|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Asn 52 Replaced By Ala And Cys 102 Replaced By Thr Length = 108

Iteration: 1
 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+A IKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAAIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108

>pdb|1RAP|A Chain A, The Structure And Function Of Omega Loop A Replacements In Cytochrome C Length = 108

Iteration: 1
 Score =  129 bits (324), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 72/89 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT + GGA+KVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTFDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|2LIR|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant P71h In Oxidized States Length = 108

Iteration: 1
 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL N  
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNHA 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108

>pdb|1YEB|A Chain A, Structure Determination And Analysis Of Yeast Iso-2- Cytochrome C And A Composite Mutant Protein Length = 108

Iteration: 1
 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 71/89 (79%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHTIE GG +KVGPNLHG+ GR +GQ  G+SYT+ANI K + W++D++ EYL NP 
Sbjct: 18  RCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDEDSMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|1CRG|A Chain A, The Role Of A Conserved Internal Water Molecule And Its Associated Hydrogen Bond Network In Cytochrome C Length = 108

Iteration: 1
 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+A IKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108

>pdb|1YTC|A Chain A, Thermodynamic Cycles As Probes Of Structure-Function Relationships In Unfolded Proteins Length = 112

Iteration: 1
 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 72/91 (79%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHTIE GG +KVGPNLHG+ GR +GQ  G+SYT+A I K + W++D++ EYL NP 
Sbjct: 22  RCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDAIINKNVKWDEDSMSEYLTNPX 81
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM FAG+KK ++R DLI Y+ +A+K
Sbjct: 82  KYIPGTKMAFAGLKKEKDRNDLITYMTKAAK 112

>pdb|1CRH|A Chain A, The Role Of A Conserved Internal Water Molecule And Its Associated Hydrogen Bond Network In Cytochrome C Length = 108

Iteration: 1
 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 71/89 (79%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+A IKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
           KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|1CRI|A Chain A, The Role Of A Conserved Internal Water Molecule And Its Associated Hydrogen Bond Network In Cytochrome C Length = 108

Iteration: 1
 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 73/91 (80%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+A IKK + W+++ + E+L NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDENNMSEFLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108

>pdb|1CCR|A Chain A, Structure Of Rice Ferricytochrome C At 2.0 Angstroms Resolution Length = 112

Iteration: 1
 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 71/90 (78%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT++ G  HK GPNL+GL GR++G  PG+SY+ A+    + W ++TL++YL NP 
Sbjct: 22  KCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPX 81
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKM+F G+ KPQER DLI+YL++A+
Sbjct: 82  KYIPGTKMVFPGLXKPQERADLISYLKEAT 111

>pdb|1CIF|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  126 bits (316), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 72/91 (79%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ G  +GQA G+SYT+ANIKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM   G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMASGGLKKEKDRNDLITYLKKAAE 108

>pdb|1CIG|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  125 bits (315), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 72/91 (79%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ G  +GQA G+SYT+A IKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKAAE 108

>pdb|1CIE|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  125 bits (314), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 72/91 (79%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+A IKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM   G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMASGGLKKEKDRNDLITYLKKAAE 108

>pdb|1CIH|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 71/91 (78%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ G  +GQA G+SYT+A IKK + W+++ + EYL NP 
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKNVLWDENNMSEYLTNPX 77
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM   G+KK ++R DLI YL++A++
Sbjct: 78  KYIPGTKMASGGLKKEKDRNDLITYLKKAAE 108

>pdb|2YK3|A Chain A, Crithidia Fasciculata Cytochrome C Length = 114

Iteration: 1
 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           + AQCHT   GGA+ VGPNL+GL+GR +G   G++Y++AN + G+ W  D L  YLENP 
Sbjct: 24  RAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLDVYLENPX 83
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLE 88
           K++PGTKM FAG+KKPQER D+IAYLE
Sbjct: 84  KFMPGTKMSFAGMKKPQERADVIAYLE 110

>pdb|4DY9|A Chain A, Leishmania Major Peroxidase Is A Cytochrome C Peroxidase Length = 113

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 67/87 (77%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           + AQCHT   GG++ VGPNL G++ R +G+  GF+Y++AN + G+ W  + L  YLENPK
Sbjct: 24  RAAQCHTATKGGSNGVGPNLFGIVNRPSGKVEGFTYSKANAESGVIWTPEVLDVYLENPK 83
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLE 88
           K++PGTKM FAGIKKPQER D+IAYLE
Sbjct: 84  KFMPGTKMSFAGIKKPQERADVIAYLE 110

>pdb|1HRO|A Chain A, Molecular Structure Of A High Potential Cytochrome C2 Isolated From Rhodopila Globiformis Length = 106

Iteration: 1
 Score =  108 bits (269), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Query: 3   CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
           C  CHT +  GA+KVGP+L+G++GR +G  PG++Y+EANIK GI W  D LF+Y+E+P+K
Sbjct: 19  CITCHT-DIKGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQK 77
Query: 63  YIPGTKMIFAGIKKPQERGDLIAYLE 88
            +PGTKM + G   PQ+R D+IAYLE
Sbjct: 78  IVPGTKMGYPGQPDPQKRADIIAYLE 103

>pdb|1CO6|A Chain A, Crystal Structure Of Ferrocytochrome C2 From Rhodopseudomonas Viridis Length = 107

Iteration: 1
 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 62/88 (70%)
Query: 2  KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
          +C  CH+I  G  +KVGP L+GL GR +G   GF+Y++AN   GITW ++   EY+ +PK
Sbjct: 12 QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPK 71
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQ 89
            IPGTKMIFAG+K  Q+  DLIAY++Q
Sbjct: 72 AKIPGTKMIFAGVKDEQKVSDLIAYIKQ 99

>pdb|1QN2|A Chain A, Cytochrome Ch From Methylobacterium Extorquens Length = 100

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 3   CAQCHTIEAGGAHKVGPNLHGLIGRKTGQ-APGFSYTEANIKKGITWNKDTLFEYLENPK 61
           C  CH  E  G   VGP L G++G K G+ A G+++++A  K G+TW++  L ++L +PK
Sbjct: 14  CKACHNFEKNG---VGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPK 70
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           K +PGTKM+F GI  P++  D+IAYL+  S
Sbjct: 71  KKVPGTKMVFPGISDPKKVDDIIAYLKTKS 100

>pdb|3M97|X Chain X, Structure Of The Soluble Domain Of Cytochrome C552 With Its Flexible Linker Segment From Paracoccus Denitrificans Length = 140

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KC  CH ++  G   VGP+L+G++GR      GF+Y++     G  W  + L E+L NPK
Sbjct: 53  KCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPK 110
Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLE 88
             + GTKM FAG+ K ++R +LIAYLE
Sbjct: 111 AVVKGTKMAFAGLPKIEDRANLIAYLE 137

>pdb|1C7M|A Chain A, Solution Structure Of The Functional Domain Of Paracoccus Denitrificans Cytochrome C552 In The Reduced State Length = 100

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 2  KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
          KC  CH ++  G   VGP+L+G++GR      GF+Y++     G  W  + L E+L NPK
Sbjct: 13 KCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPK 70
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLE 88
            + GTKM FAG+ K ++R +LIAYLE
Sbjct: 71 AVVKGTKMAFAGLPKIEDRANLIAYLE 97

>pdb|1QL3|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From Paracoccus Denitrificans In The Reduced State Length = 99

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 2  KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
          KC  CH ++  G   VGP+L+G++GR      GF+Y++     G  W  + L E+L NPK
Sbjct: 12 KCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPK 69
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLE 88
            + GTKM FAG+ K ++R +LIAYLE
Sbjct: 70 AVVKGTKMAFAGLPKIEDRANLIAYLE 96

>pdb|2C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized Rhodospirillum Rubrum Cytochrome C2 Length = 112

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIK---KGITWNKDTLFEYLE 58
           KC  CHT + GGA+KVGPNL G+          ++Y+E+  +   KG+TW +  L  Y++
Sbjct: 13  KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVK 72
Query: 59  NPKKYI--------PGTKMIFAGIKKPQERGDLIAYL 87
           NPK ++          +KM F  + K  E  ++IAYL
Sbjct: 73  NPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYL 108

>pdb|1JDL|A Chain A, Structure Of Cytochrome C2 From Rhodospirillum Centenum Length = 121

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
           KC  CH +     + VGP L G+I R+ G APGF+Y+  N    + G+ W  + +  YL 
Sbjct: 14  KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLP 73
Query: 59  NPKKYIP--------------GTKMIFAGIKKPQERGDLIAYLEQAS 91
           +P  ++                TKM+F  +   QER D++AYL+Q S
Sbjct: 74  DPNAFLRKFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQFS 119

>pdb|1HH7|A Chain A, Refined Crystal Structure Of Cytochrome C2 From Rhodopseudomonas Palustris At 1.4 Angstrom Resolution Length = 114

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 5   QCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLENPK 61
           QC T      + VGP L G++GRK G A GF+Y+  N    + G+ W  D +  YL +P 
Sbjct: 12  QCMTCHRADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPN 71
Query: 62  KYIPG--------------TKMIFAGIKKPQERGDLIAYL 87
            ++                TKM F  +   Q+R D++AYL
Sbjct: 72  AFLKKFLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYL 110

>pdb|1COT|A Chain A, X-Ray Structure Of The Cytochrome C2 Isolated From Paracoccus Denitrificans Refined To 1.7 Angstroms Resolution Length = 129

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 26/111 (23%)
Query: 2   KCAQCHTIEA--------GGAHKVGPNLHGLIGRKTGQAPGFSYTE-----ANIKKGITW 48
           KC  CH I+A        GG  K GPNL+G++GRK     GF Y E     A     +TW
Sbjct: 14  KCKACHMIQAPDGTDIIKGG--KTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTW 71
Query: 49  NKDTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
            +  L EY+ +PK ++          TKM F   K  + + D++A+L Q S
Sbjct: 72  TEADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLAQNS 119

>pdb|155C|A Chain A, The Structure Of Paracoccus Denitrificans Cytochrome C550 Length = 135

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 2   KCAQCHTIEA-------GGAHKVGPNLHGLIGRKTGQAPGFSYTE-----ANIKKGITWN 49
           KC  CH I+A       GG  K GPNL+G++GRK     GF Y E     A     +TW 
Sbjct: 15  KCKACHMIQAPDGTDIKGG--KTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWT 72
Query: 50  KDTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQ 89
           +  L EY+ +PK  +          TKM F   K  + + D++A+L Q
Sbjct: 73  EANLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLAQ 117

>pdb|2BGV|X Chain X, X-Ray Structure Of Ferric Cytochrome C-550 From Paracoccus Versutus Length = 134

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 26/111 (23%)
Query: 2   KCAQCHTIEA--------GGAHKVGPNLHGLIGRKTGQAPGFSYTE-----ANIKKGITW 48
           KC  CH ++A        GG  K GPNL+G++GRK     GF Y +     A     + W
Sbjct: 14  KCKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVW 71
Query: 49  NKDTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
           ++  L EY+ +PK ++          TKM F   K  + + D++A+L Q S
Sbjct: 72  SEADLIEYVTDPKPWLVEKTGDSAAKTKMTF---KLGKNQADVVAFLAQHS 119

>pdb|2BH4|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550 From Paracoccus Versutus Determined At 100 K. Length = 134

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 26/111 (23%)
Query: 2   KCAQCHTIEA--------GGAHKVGPNLHGLIGRKTGQAPGFSYTE-----ANIKKGITW 48
           KC  CH ++A        GG  K GPNL+G++GRK     GF Y +     A     + W
Sbjct: 14  KCKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVW 71
Query: 49  NKDTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
           ++  L EY+ +PK ++          TK  F   K  + + D++A+L Q S
Sbjct: 72  SEADLIEYVTDPKPWLVEKTGDSAAKTKKTF---KLGKNQADVVAFLAQHS 119

>pdb|2CXB|A Chain A, Crystallization And X-Ray Structure Determination Of Cytochrome C2 From Rhodobacter Sphaeroides In Three Crystal Forms Length = 124

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 20/109 (18%)
Query: 2   KCAQCHTIE-------AGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIK----KGITWNK 50
           +C  CH I        AG   K GPNL+G++GR  G    F      +K    KG+ W++
Sbjct: 14  QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDE 73
Query: 51  DTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
           +   +Y+++P K++           KM F  +KK  +  ++ AYL+Q +
Sbjct: 74  EHFVQYVQDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQVA 121

>pdb|1C2N|A Chain A, Cytochrome C2, Nmr, 20 Structures Length = 137

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 2   KCAQCHTI------EAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDT 52
           KC  CH+I      E     K GPNL+G++GR  G  P F Y ++ +     G  W ++ 
Sbjct: 33  KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 92
Query: 53  LFEYLENPKKYI 64
           +  Y+++P  ++
Sbjct: 93  IATYVKDPGAFL 104

>pdb|1VYD|A Chain A, Crystal Structure Of Cytochrome C2 Mutant G95e Length = 116

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 2  KCAQCHTI------EAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDT 52
          KC  CH+I      E     K GPNL+G++GR  G  P F Y ++ +     G  W ++ 
Sbjct: 12 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 71
Query: 53 LFEYLENPKKYI 64
          +  Y+++P  ++
Sbjct: 72 IATYVKDPGAFL 83

>pdb|1C2R|A Chain A, Molecular Structure Of Cytochrome C2 Isolated From Rhodobacter Capsulatus Determined At 2.5 Angstroms Resolution Length = 116

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 2  KCAQCHTI------EAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDT 52
          KC  CH+I      E     K GPNL+G++GR  G  P F Y ++ +     G  W ++ 
Sbjct: 12 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 71
Query: 53 LFEYLENPKKYI 64
          +  Y+++P  ++
Sbjct: 72 IATYVKDPGAFL 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	92
1co6_A	107	Protein (cytochrome C2); electron transport(heme p	4e-60
1i54_A	103	Cytochrome C; zinc-porphyrin, mixed-metal, electro	9e-60
1ycc_A	108	Cytochrome C; electron transport (cytochrome); HET	3e-59
1ccr_A	112	Cytochrome C; electron transport(cytochrome); HET:	5e-58
2w9k_A	114	Cytochrome C, cytochrome C555; electron transport,	9e-57
1hro_A	106	Cytochrome C2; electron transport, photosynthesis,	2e-55
3m97_X	140	Cytochrome C-552, cytochrome C552; electron transp	4e-55
1qn2_A	100	Cytochrome CH; electron transport; HET: HEC; 2.01A	3e-53
1jdl_A	121	C552, cytochrome C2, ISO-2; alpha helix, electron	1e-48
3c2c_A	112	Cytochrome C2; electron transport protein (cytochr	2e-48
155c_A	135	Cytochrome C550; electron transport; HET: HEM; 2.5	2e-45
2bh4_X	134	Cytochrome C-550; C-type cytochrome, heme, electro	1e-44
1cxc_A	124	Cytochrome C2; electron transport (cytochrome); HE	4e-44
1vyd_A	116	Cytochrome C2; electron transport, redox, mutant;	7e-44
1i8o_A	114	Cytochrome C2; electron transport, heme, ammonia,	1e-43
1c2n_A	137	Cytochrome C2; electron transport; HET: HEC; NMR {	4e-43
1w2l_A	99	Cytochrome oxidase subunit II; cytochrome C domain	7e-19
2l4d_A	110	SCO1/SENC family protein/cytochrome C; electron tr	8e-11
3o0r_C	146	Nitric oxide reductase subunit C; oxidoreductase,	4e-10
1mz4_A	137	Cytochrome C550; PSII associated cytochrome, elect	4e-09
3oa8_B	208	SOXX; cytochrome, sulfur oxidation pathway, heme-b	1e-08
1w5c_T	163	Cytochrome C-550; photosynthesis, water oxidation,	7e-08
1e29_A	135	Cytochrome C549; electron transport, PSII associat	8e-08
2yev_B	337	Cytochrome C oxidase subunit 2; electron transport	1e-07
3cp5_A	124	Cytochrome C; electron transfer protein, electron	1e-07
2c1d_B	137	SOXX; sulfur oxidation, cytochrome-C-type, oxidore	3e-07
1h32_B	138	Cytochrome C, SOXX; electron transfer, sulfur cycl	7e-06
1f1c_A	129	Cytochrome C549; dimeric cytochrome, electron tran	2e-05

>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A* Length = 107

 Score =  177 bits (452), Expect = 4e-60
 Identities = 46/91 (50%), Positives = 63/91 (69%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C  CH+I  G  +KVGP L+GL GR +G   GF+Y++AN   GITW ++   EY+ +PK
Sbjct: 12  QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPK 71

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
             IPGTKMIFAG+K  Q+  DLIAY++Q + 
Sbjct: 72  AKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 102

>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ... Length = 103

 Score =  176 bits (449), Expect = 9e-60
 Identities = 70/91 (76%), Positives = 76/91 (83%)

Query: 1   MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
            KCAQCHT+E GG HKVGPNL GL GRKTGQA G+SYT+AN  KGI WN DTL EYLENP
Sbjct: 12  QKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENP 71

Query: 61  KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KKYIPGTKMIFAGIKK  ER DL+AYL+ A+
Sbjct: 72  KKYIPGTKMIFAGIKKKGERQDLVAYLKSAT 102

>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ... Length = 108

 Score =  175 bits (446), Expect = 3e-59
 Identities = 56/92 (60%), Positives = 73/92 (79%)

Query: 1   MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
            +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 17  TRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNP 76

Query: 61  KKYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
            KYIPGTKM F G+KK ++R DLI YL++A +
Sbjct: 77  XKYIPGTKMAFGGLKKEKDRNDLITYLKKACE 108

>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1 Length = 112

 Score =  172 bits (438), Expect = 5e-58
 Identities = 52/91 (57%), Positives = 71/91 (78%)

Query: 1   MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
            KCAQCHT++ G  HK GPNL+GL GR++G  PG+SY+ A+    + W ++TL++YL NP
Sbjct: 21  TKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNP 80

Query: 61  KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
            KYIPGTKM+F G+ KPQER DLI+YL++A+
Sbjct: 81  XKYIPGTKMVFPGLXKPQERADLISYLKEAT 111

>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1 Length = 106

 Score =  165 bits (421), Expect = 2e-55
 Identities = 48/88 (54%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
            C  CHT    GA+KVGP+L+G++GR +G  PG++Y+EANIK GI W  D LF+Y+E+P+
Sbjct: 18  ICITCHTDI-KGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQ 76

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQ 89
           K +PGTKM + G   PQ+R D+IAYLE 
Sbjct: 77  KIVPGTKMGYPGQPDPQKRADIIAYLET 104

>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A* Length = 140

 Score =  166 bits (422), Expect = 4e-55
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KC  CH ++  G   VGP+L+G++GR      GF+Y++     G  W  + L E+L NPK
Sbjct: 53  KCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPK 110

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQ 89
             + GTKM FAG+ K ++R +LIAYLE 
Sbjct: 111 AVVKGTKMAFAGLPKIEDRANLIAYLEG 138

>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1 Length = 100

 Score =  160 bits (406), Expect = 3e-53
 Identities = 40/91 (43%), Positives = 60/91 (65%), Gaps = 4/91 (4%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQ-APGFSYTEANIKKGITWNKDTLFEYLENP 60
            C  CH  E  G   VGP L G++G K G+ A G+++++A  K G+TW++  L ++L +P
Sbjct: 13  PCKACHNFEKNG---VGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADP 69

Query: 61  KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KK +PGTKM+F GI  P++  D+IAYL+  S
Sbjct: 70  KKKVPGTKMVFPGISDPKKVDDIIAYLKTKS 100

>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1 Length = 121

 Score =  149 bits (378), Expect = 1e-48
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 18/107 (16%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
           KC  CH +     + VGP L G+I R+ G APGF+Y+  N    + G+ W  + +  YL 
Sbjct: 14  KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLP 73

Query: 59  NPKKYIP--------------GTKMIFAGIKKPQERGDLIAYLEQAS 91
           +P  ++                TKM+F  +   QER D++AYL+Q S
Sbjct: 74  DPNAFLRKFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQFS 119

>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A* Length = 112

 Score =  148 bits (375), Expect = 2e-48
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 12/99 (12%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
           KC  CHT + GGA+KVGPNL G+          ++Y+E+      KG+TW +  L  Y++
Sbjct: 13  KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVK 72

Query: 59  NPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQ 89
           NPK ++          +KM F  + K  E  ++IAYL+ 
Sbjct: 73  NPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYLKT 110

>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1 Length = 135

 Score =  141 bits (357), Expect = 2e-45
 Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 21/109 (19%)

Query: 2   KCAQCHTIEAGGA-----HKVGPNLHGLIGRKTGQAPGFSYTEA-----NIKKGITWNKD 51
           KC  CH I+A         K GPNL+G++GRK     GF Y E           +TW + 
Sbjct: 15  KCKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEA 74

Query: 52  TLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQASK 92
            L EY+ +PK  +          TKM F   K  + + D++A+L Q   
Sbjct: 75  NLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLAQDDP 120

>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A* Length = 134

 Score =  139 bits (352), Expect = 1e-44
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 16/106 (15%)

Query: 2   KCAQCHTIEAGGA------HKVGPNLHGLIGRKTGQAPGFSYTEA-----NIKKGITWNK 50
           KC  CH ++A          K GPNL+G++GRK     GF Y +           + W++
Sbjct: 14  KCKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSE 73

Query: 51  DTLFEYLENPKKYIP-GTKMIFAGIKK----PQERGDLIAYLEQAS 91
             L EY+ +PK ++   T    A  KK     + + D++A+L Q S
Sbjct: 74  ADLIEYVTDPKPWLVEKTGDSAAKTKKTFKLGKNQADVVAFLAQHS 119

>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A* Length = 124

 Score =  137 bits (348), Expect = 4e-44
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 20/109 (18%)

Query: 2   KCAQCHTIE-------AGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIK----KGITWNK 50
           +C  CH I        AG   K GPNL+G++GR  G    F      +K    KG+ W++
Sbjct: 14  QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDE 73

Query: 51  DTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
           +   +Y+++P K++           KM F  +KK  +  ++ AYL+Q +
Sbjct: 74  EHFVQYVQDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQVA 121

>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A* Length = 116

 Score =  136 bits (345), Expect = 7e-44
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 17/105 (16%)

Query: 2   KCAQCHTI------EAGGAHKVGPNLHGLIGRKTGQAPGFSYTE---ANIKKGITWNKDT 52
           KC  CH+I      E     K GPNL+G++GR  G  P F Y +   A    G  W ++ 
Sbjct: 12  KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 71

Query: 53  LFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQ 89
           +  Y+++P  ++          T+M F   K  ++    +A + +
Sbjct: 72  IATYVKDPGAFLKEKLDDKKAKTEMAFKLAKGGEDVAAYLASVVK 116

>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A* Length = 114

 Score =  135 bits (343), Expect = 1e-43
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 21/105 (20%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
           +C  CH       + VGP L G++GRK G A GF+Y+  N    + G+ W  D +  YL 
Sbjct: 12  QCMTCHR---ADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLA 68

Query: 59  NPKKYIPG--------------TKMIFAGIKKPQERGDLIAYLEQ 89
           +P  ++                TKM F  +   Q+R D++AYL  
Sbjct: 69  DPNAFLKKFLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYLAT 112

>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1 Length = 137

 Score =  136 bits (343), Expect = 4e-43
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 20/108 (18%)

Query: 2   KCAQCHTI------EAGGAHKVGPNLHGLIGRKTGQAPGFSYTE---ANIKKGITWNKDT 52
           KC  CH+I      E     K GPNL+G++GR  G  P F Y +   A    G  W ++ 
Sbjct: 33  KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 92

Query: 53  LFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQASK 92
           +  Y+++P  ++          T M F   K  +   D+ AYL    K
Sbjct: 93  IATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGE---DVAAYLASVVK 137

>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus} Length = 99

 Score = 73.0 bits (179), Expect = 7e-19
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 15/91 (16%)

Query: 3  CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
          C  CH+I+  G+  VGP+  GL G       G +            +++ L E +  P  
Sbjct: 18 CFSCHSID--GSRLVGPSFKGLYGSTRTFEDGTTAV---------ADENYLRESILQPGA 66

Query: 63 YI----PGTKMIFAGIKKPQERGDLIAYLEQ 89
           +    P            +E   LI +++Q
Sbjct: 67 KVVQGYPNVMPASYASLSEREVAALIEFIKQ 97

>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida} Length = 110

 Score = 52.8 bits (126), Expect = 8e-11
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 15/97 (15%)

Query: 1  MKCAQCHTIEAGGAHK--VGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE 58
           +C+ CHT+      +  +GP+L G+                 + + +      L E   
Sbjct: 12 TRCSSCHTVGNTEPGQPGIGPDLLGV---------TRQRDANWLVRWLKVPDQMLAEKDP 62

Query: 59 NPK---KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
                +      M    +    E   LI+YLE+ + 
Sbjct: 63 LAMLLFEQYNRLAMPNMRL-GDAEVSALISYLEEETA 98

>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa} Length = 146

 Score = 51.9 bits (124), Expect = 4e-10
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 18/91 (19%)

Query: 3   CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
           C  CHT+   GA+   P L  ++GR+ G+                     L  +++    
Sbjct: 61  CVGCHTLLGEGAY-FAPELGNVVGRRGGEE---------------GFNTFLQAWMKIQPL 104

Query: 63  YIPG-TKMIFAGIKKPQERGDLIAYLEQASK 92
            +PG   M    +    +  DL  +L+ +SK
Sbjct: 105 NVPGRRAMPQFHL-SEGQVDDLAEFLKWSSK 134

>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V* Length = 137

 Score = 49.3 bits (117), Expect = 4e-09
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 17/90 (18%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
            CA CH    GG  K  P+L           P               N + L +Y++NP 
Sbjct: 36  ACASCH---VGGITKTNPSLDLRTETLALATPP------------RDNIEGLVDYMKNPT 80

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
            Y  G + I A +       D+   +   +
Sbjct: 81  TY-DGEQEI-AEVHPSLRSADIFPKMRNLT 108

>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B* Length = 208

 Score = 49.1 bits (116), Expect = 1e-08
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 20/90 (22%)

Query: 3   CAQCHTIEAGGAH--KVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
           C  CH ++        +GP+L G  GR+   +                +    F  + + 
Sbjct: 125 CYACHQLDPKEVSYGTLGPSLVG-YGRERNFSA--------------EDAKIAFAKVYDA 169

Query: 61  KKYIPGTKM---IFAGIKKPQERGDLIAYL 87
           +  +  + M      G+   Q+  D++AYL
Sbjct: 170 QASLACSSMPRFGVNGVLTEQQIKDVVAYL 199

>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1 Length = 163

 Score = 46.4 bits (109), Expect = 7e-08
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 17/89 (19%)

Query: 3   CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
           CA CH    GG  K  P+L           P               N + L +Y++NP  
Sbjct: 63  CASCH---VGGITKTNPSLDLRTETLALATPP------------RDNIEGLVDYMKNPTT 107

Query: 63  YIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           Y  G + I A +       D+   +   +
Sbjct: 108 Y-DGEQEI-AEVHPSLRSADIFPKMRNLT 134

>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1 Length = 135

 Score = 45.9 bits (108), Expect = 8e-08
 Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
            C QCH     G  K   N+   +    G  P               N   L E+L+NPK
Sbjct: 36  TCTQCH---LQGKTKTNNNVSLGLADLAGAEPR------------RDNVLALVEFLKNPK 80

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
            Y  G     + +     R D+   +   +
Sbjct: 81  SY-DGEDDY-SELHPNISRPDIYPEMRNYT 108

>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus} Length = 337

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 3   CAQCHTIE-AGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           CA CH +  +     +GP L GL G +T    G                + L  ++ +P 
Sbjct: 247 CAACHGVARSMPPAVIGPEL-GLWGNRTSLGAGIVEN----------TPENLKAWIRDPA 295

Query: 62  KYIPGTKM-IFAGIKKPQERGDLIAYLE 88
              PG KM  F  +   ++   L+ YLE
Sbjct: 296 GMKPGVKMPGFPQL-SEEDLDALVRYLE 322

>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus} Length = 124

 Score = 45.1 bits (106), Expect = 1e-07
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 14/92 (15%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
            C  CH ++      +GP L  +  R              I   +      +  +    +
Sbjct: 44  YCTACHRLDERF---IGPALRDVTKR---------RGPVYIMNVMLNPNGMIQRHPVMKQ 91

Query: 62  KYI-PGTKMIFAGIKKPQERGDLIAYLEQASK 92
                GT M    + + ++   ++ YL Q ++
Sbjct: 92  LVQEYGTMMTDMALSE-EQARAILEYLRQVAE 122

>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus} Length = 137

 Score = 44.3 bits (104), Expect = 3e-07
 Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 47/114 (41%)

Query: 3   CAQCHTIEAGGAHK----VGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE 58
           C  CH I A    +    + P L G   R                    W +  L   + 
Sbjct: 41  CVACHQIGALPDVEFPGTIAPPLDGAGDR--------------------WTEAQLRGIVA 80

Query: 59  NPKKYIPGTK-----------------------MIFAGIKKPQERGDLIAYLEQ 89
           N K    GT                           A I   Q+  D++A+L  
Sbjct: 81  NAKMTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPILNAQQIEDVVAFLVT 134

>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B* Length = 138

 Score = 40.6 bits (94), Expect = 7e-06
 Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 47/114 (41%)

Query: 3   CAQCHTIEAGGAHK----VGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE 58
           C  CH +      +    VGP+L G+  R                    + +  +   L 
Sbjct: 42  CIACHEVTEMADAQFPGTVGPSLDGVAAR--------------------YPEAMIRGILV 81

Query: 59  NPKKYIPGTK-----------------------MIFAGIKKPQERGDLIAYLEQ 89
           N K   P T                             +    +  D++AYL  
Sbjct: 82  NSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMT 135

>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1 Length = 129

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 17/89 (19%)

Query: 3   CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
           CAQCH   A G  +  P+++          P               N   L +Y++NP  
Sbjct: 35  CAQCH---ALGVTRTNPDVNLSPEALALATPPR------------DNIAALVDYIKNPTT 79

Query: 63  YIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           Y  G   I + +    +  D+   +   S
Sbjct: 80  Y-DGFVEI-SELHPSLKSSDIFPKMRNIS 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	92
3m97_X	140	Cytochrome C-552, cytochrome C552; electron transp	99.96
1cxc_A	124	Cytochrome C2; electron transport (cytochrome); HE	99.96
1vyd_A	116	Cytochrome C2; electron transport, redox, mutant;	99.96
1ycc_A	108	Cytochrome C; electron transport (cytochrome); HET	99.95
155c_A	135	Cytochrome C550; electron transport; HET: HEM; 2.5	99.95
2bh4_X	134	Cytochrome C-550; C-type cytochrome, heme, electro	99.95
2w9k_A	114	Cytochrome C, cytochrome C555; electron transport,	99.94
1i54_A	103	Cytochrome C; zinc-porphyrin, mixed-metal, electro	99.94
1ccr_A	112	Cytochrome C; electron transport(cytochrome); HET:	99.94
1hro_A	106	Cytochrome C2; electron transport, photosynthesis,	99.94
1co6_A	107	Protein (cytochrome C2); electron transport(heme p	99.94
3c2c_A	112	Cytochrome C2; electron transport protein (cytochr	99.94
1qn2_A	100	Cytochrome CH; electron transport; HET: HEC; 2.01A	99.94
1jdl_A	121	C552, cytochrome C2, ISO-2; alpha helix, electron	99.93
1c2n_A	137	Cytochrome C2; electron transport; HET: HEC; NMR {	99.93
1i8o_A	114	Cytochrome C2; electron transport, heme, ammonia,	99.92
1w2l_A	99	Cytochrome oxidase subunit II; cytochrome C domain	99.77
2c1d_B	137	SOXX; sulfur oxidation, cytochrome-C-type, oxidore	99.74
1h32_B	138	Cytochrome C, SOXX; electron transfer, sulfur cycl	99.73
1ayg_A	80	Cytochrome C-552; electron transport, porphyrin, f	99.73
2l4d_A	110	SCO1/SENC family protein/cytochrome C; electron tr	99.69
2d0s_A	79	Cytochrome C, cytochrome C552; heme protein, elect	99.69
3o0r_C	146	Nitric oxide reductase subunit C; oxidoreductase,	99.68
3mk7_B	203	Cytochrome C oxidase, CBB3-type, subunit O; TM hel	99.67
2exv_A	82	Cytochrome C-551; alpha helix, heme C, electron tr	99.67
1cch_A	82	Cytochrome C551; electron transport; HET: HEM; NMR	99.66
3oa8_B	208	SOXX; cytochrome, sulfur oxidation pathway, heme-b	99.65
1e29_A	135	Cytochrome C549; electron transport, PSII associat	99.63
1a56_A	81	C-551, ferricytochrome C-552; hemoprotein, prokary	99.61
1c75_A	71	Cytochrome C-553; heme, bacillus pasteurii, AB ini	99.59
3cp5_A	124	Cytochrome C; electron transfer protein, electron	99.59
1f1c_A	129	Cytochrome C549; dimeric cytochrome, electron tran	99.56
2yev_B	337	Cytochrome C oxidase subunit 2; electron transport	99.3
2zxy_A	87	Cytochrome C552, cytochrome C555; heme protein, ox	99.52
1cno_A	87	Cytochrome C552; electron transport, pseudomonas n	99.51
1c53_A	79	Cytochrome C553; electron transport; HET: HEM; 1.8	99.49
2zzs_A	103	Cytochrome C554; C-type cytochrome, electron trans	99.44
2d0w_A	170	Cytochrome CL; electron transfer, electron transpo	99.43
1wve_C	80	4-cresol dehydrogenase [hydroxylating] cytochrome	99.43
2c8s_A	172	Cytochrome C-L; HAEM, heme, electron transport, me	99.42
2gc4_D	147	Cytochrome C-L; electron transfer, methylamine deh	99.41
3ph2_B	86	Cytochrome C6; photosynthesis, cytochrome F, photo	99.39
1gdv_A	85	Cytochrome C6; RED ALGA, electron transport; HET:	99.36
1f1f_A	89	Cytochrome C6; heme, protein structure, cyanobacte	99.33
2ce0_A	105	Cytochrome C6; chloroplast, electron transport, he	99.33
3cu4_A	85	Cytochrome C family protein; monoheme cytochrome,	99.32
1ls9_A	91	Cytochrome C6; omega loop, antiparallel beta-sheet	99.3
3dmi_A	88	Cytochrome C6; electron transport, transit peptide	99.29
1mz4_A	137	Cytochrome C550; PSII associated cytochrome, elect	99.28
1c52_A	131	Cytochrome-C552; electron transport protein, MAD,	99.28
1m70_A	190	Cytochrome C4; electron transport, diheme protein;	99.26
1cyi_A	90	Cytochrome C6, cytochrome C553; photosynthesis, el	99.26
1c6r_A	89	Cytochrome C6; electron transport protein, reduced	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.24
2zon_G	87	Cytochrome C551; nitrite, electron transfer, denit	99.23
3dp5_A	99	OMCF, cytochrome C family protein; C-type cytochro	99.22
1gks_A	78	Cytochrome C551; halophilic purple phototrophic ba	99.22
1w5c_T	163	Cytochrome C-550; photosynthesis, water oxidation,	99.2
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	99.19
1h1o_A	183	Cytochrome C-552; electron transport, electron tra	99.17
3dr0_A	93	Cytochrome C6; photosynthesis, cyanobacteria, elec	99.13
1kx2_A	81	Mono-heme C-type cytochrome SCYA; HAEM protein, fe	99.12
3vrd_A	174	FCCA subunit, flavocytochrome C heme subunit; sulf	99.11
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.04
1m70_A	190	Cytochrome C4; electron transport, diheme protein;	99.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.04
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.02
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	98.99
1cc5_A	83	Cytochrome C5; electron transport (heme protein);	98.9
1h1o_A	183	Cytochrome C-552; electron transport, electron tra	98.9
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.87
2xts_B	205	Cytochrome; oxidoreductase-electron transport comp	98.86
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	98.83
3vrd_A	174	FCCA subunit, flavocytochrome C heme subunit; sulf	98.76
1zzh_A	328	Cytochrome C peroxidase; heme groups, oxidoreducta	98.24
1nml_A	326	DI-HAEM cytochrome C peroxidase; oxidoreductase, e	98.19
3o5c_A	320	Cytochrome C551 peroxidase; diheme cytochrome, hyd	98.18
2c1v_A	338	DI-HAEM cytochrome C peroxidase; electron transpor	98.16
2vhd_A	323	Cytochrome C551 peroxidase; iron, heme, transport,	98.12
1iqc_A	308	DI-heme peroxidase; proteobacteria, B subdivision,	98.01
1pp9_D	241	Cytochrome C-1, cytochrome C1, heme protein, mitoc	97.91
3oa8_A	275	SOXA; cytochrome, sulfur oxidation pathway, heme-b	97.91
3a9f_A	92	Cytochrome C; alpha helix, mono heme, electron tra	97.91
3cx5_D	248	Cytochrome C1, heme protein, mitochondrial; comple	97.9
3hq9_A	345	Cytochrome C551 peroxidase; oxidoreductase; HET: H	97.89
1e8e_A	124	Cytochrome C''; oxidoreductase(cytochrome), ligand	97.88
2blf_B	81	SORB, sulfite\:cytochrome C oxidoreductase subunit	97.86
4aan_A	341	Cytochrome C551 peroxidase; oxidoreductase, multih	97.72
2yiu_B	263	Cytochrome C1, heme protein; oxidoreductase; HET:	97.67
1h32_A	261	SOXA, diheme cytochrome C; electron transfer, sulf	97.67
1jmx_A	494	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.64
3sjl_A	373	Methylamine utilization protein MAUG; MAUG, C-heme	97.61
2c1d_A	264	SOXA; sulfur oxidation, cytochrome-C-type, oxidore	97.32
1pby_A	489	Quinohemoprotein amine dehydrogenase 60 kDa subuni	97.3
1dw0_A	112	Cytochrome C; asparagine ligation, oxygen binding,	97.05
3oa8_A	275	SOXA; cytochrome, sulfur oxidation pathway, heme-b	96.76
2qjy_B	269	Cytochrome C1; cytochrome B, 8 TM helixces cytochr	96.73
1zrt_D	258	Cytochrome C1; cytochrome BC1, membrane protein, h	96.62
2c1d_A	264	SOXA; sulfur oxidation, cytochrome-C-type, oxidore	96.48
1h32_A	261	SOXA, diheme cytochrome C; electron transfer, sulf	95.67
1iqc_A	308	DI-heme peroxidase; proteobacteria, B subdivision,	95.62
1zzh_A	328	Cytochrome C peroxidase; heme groups, oxidoreducta	95.42
2c1v_A	338	DI-HAEM cytochrome C peroxidase; electron transpor	95.28
2vhd_A	323	Cytochrome C551 peroxidase; iron, heme, transport,	95.01
3o5c_A	320	Cytochrome C551 peroxidase; diheme cytochrome, hyd	92.94
2fwt_A	125	DHC, diheme cytochrome C; diheme protein, electron	88.74
2fw5_A	139	DHC, diheme cytochrome C; electron transfer, elect	88.2
3b47_A	134	GSU0582, methyl-accepting chemotaxis protein; PAS	82.88

>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*

Probab=99.96  E-value=2.8e-30  Score=162.32  Aligned_cols=89  Identities=43%  Similarity=0.854  Sum_probs=83.2

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER   80 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~   80 (92)
                      ++|.+||+++  +.+.+||+|.++.+|..++.++|.|+.+++..++.|++++|.+||++|+.+.|++.|||.++++++|+
T Consensus        52 ~~C~~CH~~~--~~~~~gP~L~gv~~r~~~~~~g~~Ys~al~~~g~~w~~e~L~~~I~~P~~~~pgt~Mp~~gllsdedi  129 (140)
T 3m97_X           52 GKCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDR  129 (140)
T ss_dssp             GGTTTTCCSS--SCCSSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTCSCCCCCCCSHHHH
T ss_pred             HhhhhhcCCC--CCCCcCCCccccccccccccccccccHhhhhccccCCHHHHHHHHhcccccCCCCCCCCCCCCCHHHH
Confidence            4799999994  35689999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||++|+
T Consensus       130 ~aLiAYL~sLk  140 (140)
T 3m97_X          130 ANLIAYLEGQQ  140 (140)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHcC
Confidence            99999999986

>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*

Probab=99.96  E-value=4.2e-30  Score=158.42  Aligned_cols=90  Identities=36%  Similarity=0.793  Sum_probs=81.3

Q ss_pred             CCccCccccC-------CCCCCCCCCccCccCCCCCCCCCC-cchHHhh---hcCccccHHHHHHHHhCCCCCCCC----
Q psy8407           2 KCAQCHTIEA-------GGAHKVGPNLHGLIGRKTGQAPGF-SYTEANI---KKGITWNKDTLFEYLENPKKYIPG----   66 (92)
Q Consensus         2 ~C~~CH~~~~-------~~~~~~GP~L~~i~~r~~~~~~g~-~y~~~~~---~~~~~~~~~~l~~~i~~P~~~~p~----   66 (92)
                      +|++||++.+       .+.+.+||+|.+|++|..++.++| .|+.+++   ..++.|++++|.+||++|+.++|+    
T Consensus        14 ~C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l~~~~~~g~~w~~~~l~~~l~~P~~~~pg~~~d   93 (124)
T 1cxc_A           14 QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGD   93 (124)
T ss_dssp             GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHSC
T ss_pred             hhhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHHHhhhhcCccCCHHHHHHHHhChHhhCCCcccC
Confidence            6999999985       235689999999999999999999 8999994   578999999999999999999998    


Q ss_pred             ----CCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407          67 ----TKMIFAGIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        67 ----~~Mp~~~~~~~~d~~~liayL~sl~~   92 (92)
                          +.|||. +++++|+++||+||++++.
T Consensus        94 ~~a~t~M~~~-l~~~~d~~dliaYL~sl~~  122 (124)
T 1cxc_A           94 AKAKGKMTFK-LKKEADAHNIWAYLQQVAV  122 (124)
T ss_dssp             TTCCCSCCCC-CCCHHHHHHHHHHHHHHCC
T ss_pred             cccCCCCCCc-cCCHHHHHHHHHHHHHcCC
Confidence                999998 8789999999999999863

>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*

Probab=99.96  E-value=6.8e-30  Score=156.04  Aligned_cols=88  Identities=36%  Similarity=0.781  Sum_probs=78.7

Q ss_pred             CCccCccccCC------CCCCCCCCccCccCCCCCCCCCCcchHHhh---hcCccccHHHHHHHHhCCCCCCCC------
Q psy8407           2 KCAQCHTIEAG------GAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLENPKKYIPG------   66 (92)
Q Consensus         2 ~C~~CH~~~~~------~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~---~~~~~~~~~~l~~~i~~P~~~~p~------   66 (92)
                      +|++||++.+.      +.+.+||+|.++++|..++.++|.|+.+++   ..++.|++++|.+||++|+.++|+      
T Consensus        12 ~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~g~~w~~~~L~~~l~~P~~~~pg~~~d~~   91 (116)
T 1vyd_A           12 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKK   91 (116)
T ss_dssp             GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHTCTT
T ss_pred             cchhhCCCCCCCCccccccCccCcccccccccccccccccccCHHHHhhcccCccCCHHHHHHHHHCHHHhCCCcccCcc
Confidence            69999999864      356899999999999999999999999994   678999999999999999999998      


Q ss_pred             --CCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407          67 --TKMIFAGIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        67 --~~Mp~~~~~~~~d~~~liayL~sl~~   92 (92)
                        +.|||. +.+++|  +||+||+++++
T Consensus        92 ~~t~Mpf~-l~~~~~--dliaYL~sl~~  116 (116)
T 1vyd_A           92 AKTEMAFK-LAKGGE--DVAAYLASVVK  116 (116)
T ss_dssp             CCCSCCCC-CSSCHH--HHHHHHHHTCC
T ss_pred             ccCCCCCC-CCCHHH--HHHHHHHHhcC
Confidence              999976 665555  99999999975

>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...

Probab=99.95  E-value=5.7e-28  Score=144.47  Aligned_cols=91  Identities=62%  Similarity=1.189  Sum_probs=83.3

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|++||++++.+.+.+||+|.++.+|..+..++|.|+.+++..+..|++++|.+||++|....|++.|||.++++++|++
T Consensus        18 ~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~Mp~~~l~s~~ei~   97 (108)
T 1ycc_A           18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRN   97 (108)
T ss_dssp             HTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCCCCCCCCCHHHHH
T ss_pred             hCcccCCCCCCCCCCCCCChhhhccccccccccccccHHHHhcCcccCHHHHHHHHHChhhhcCCcccCCCCCCCHHHHH
Confidence            59999999976567899999999999988889999999998889999999999999999888889999988887899999


Q ss_pred             HHHHHHhhccC
Q psy8407          82 DLIAYLEQASK   92 (92)
Q Consensus        82 ~liayL~sl~~   92 (92)
                      +|++||+++++
T Consensus        98 ~l~aYl~sl~e  108 (108)
T 1ycc_A           98 DLITYLKKACE  108 (108)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999875

>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1

Probab=99.95  E-value=7e-28  Score=150.51  Aligned_cols=87  Identities=39%  Similarity=0.766  Sum_probs=78.4

Q ss_pred             CCccCccccCC-----CCCCCCCCccCccCCCCCCCCCCcchHHh-----hhcCccccHHHHHHHHhCCCCCCCC-----
Q psy8407           2 KCAQCHTIEAG-----GAHKVGPNLHGLIGRKTGQAPGFSYTEAN-----IKKGITWNKDTLFEYLENPKKYIPG-----   66 (92)
Q Consensus         2 ~C~~CH~~~~~-----~~~~~GP~L~~i~~r~~~~~~g~~y~~~~-----~~~~~~~~~~~l~~~i~~P~~~~p~-----   66 (92)
                      +|++||++++.     +.+.+||+|.++++|..++.+||.|+.++     +..++.|++++|.+||++|+.++|+     
T Consensus        15 ~CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~~~~w~~~~L~~~i~~P~~~~pg~~~~~   94 (135)
T 155c_A           15 KCKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEANLIEYVTDPKPLVKKMTDDK   94 (135)
T ss_dssp             TTTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHHHHHHHHCSCCCCCSHHHHHHHHSSTTTTTTTSCCS
T ss_pred             HHHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHHhhhhhccccccCCHHHHHHHHhCHHhhCCCccccc
Confidence            49999999964     45789999999999999999999999999     7788999999999999999999999     


Q ss_pred             ---CCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          67 ---TKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        67 ---~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                         +.|||. +. ++|+ +||+||++++
T Consensus        95 ~~~t~Mpf~-L~-~~e~-dliAYL~sl~  119 (135)
T 155c_A           95 GAKTKMTFK-MG-KNQA-DVVAFLAQDD  119 (135)
T ss_dssp             CCCCSCCCC-CC-SCHH-HHHHHHHHHS
T ss_pred             cccCCCCCC-CC-CHHH-HHHHHHHhcC
Confidence               999977 65 5666 9999999986

>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*

Probab=99.95  E-value=1.5e-28  Score=153.31  Aligned_cols=87  Identities=36%  Similarity=0.743  Sum_probs=78.9

Q ss_pred             CCccCccccCC------CCCCCCCCccCccCCCCCCCCCCcchHHh-----hhcCccccHHHHHHHHhCCCCCCCC----
Q psy8407           2 KCAQCHTIEAG------GAHKVGPNLHGLIGRKTGQAPGFSYTEAN-----IKKGITWNKDTLFEYLENPKKYIPG----   66 (92)
Q Consensus         2 ~C~~CH~~~~~------~~~~~GP~L~~i~~r~~~~~~g~~y~~~~-----~~~~~~~~~~~l~~~i~~P~~~~p~----   66 (92)
                      +|++||++.+.      +.+.+||+|.++++|..++.+||.|+.++     +..++.|++++|.+||++|+.++|+    
T Consensus        14 ~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~g~~w~~~~L~~~l~~P~~~~pg~~~d   93 (134)
T 2bh4_X           14 KCKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSEADLIEYVTDPKPWLVEKTGD   93 (134)
T ss_dssp             GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHHHCHHHHHHHHHCC
T ss_pred             HhHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHHhhhhccccCccCCHHHHHHHHhCHHhcCCCcccC
Confidence            49999999964      45789999999999999999999999998     7788999999999999999998888    


Q ss_pred             ----CCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          67 ----TKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        67 ----~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                          +.|||. | +++|+ +||+||++++
T Consensus        94 ~~a~t~Mpf~-L-s~~e~-dliaYL~sl~  119 (134)
T 2bh4_X           94 SAAKTKKTFK-L-GKNQA-DVVAFLAQHS  119 (134)
T ss_dssp             TTCCCSCCCC-C-CSCHH-HHHHHHHHTC
T ss_pred             ccccCCCCCC-C-ChHHH-HHHHHHHHcC
Confidence                999987 5 47888 9999999986

>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...

Probab=99.94  E-value=2.1e-27  Score=140.68  Aligned_cols=91  Identities=77%  Similarity=1.278  Sum_probs=82.9

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|++||++++.+.+.+||+|.++.+|..+..++|.|+.+++..+..|++++|..||++|....|++.|||.++++++|++
T Consensus        13 ~C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~Mp~~~l~~~~ei~   92 (103)
T 1i54_A           13 KCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKMIFAGIKKKGERQ   92 (103)
T ss_dssp             HTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHSCCBCSHHHHHHHHHCHHHHSTTCSCCCCCCCCHHHHH
T ss_pred             hhHHhCCCCCCCCCCCCCCcccccCccccccCCccccHHHHhCCceECHHHHHHHHhCccccCCCCcCCccCCCCHHHHH
Confidence            69999999976567899999999999888889999999999889999999999999999888888999988877799999


Q ss_pred             HHHHHHhhccC
Q psy8407          82 DLIAYLEQASK   92 (92)
Q Consensus        82 ~liayL~sl~~   92 (92)
                      +|++||+++++
T Consensus        93 ~l~aYl~sl~~  103 (103)
T 1i54_A           93 DLVAYLKSATS  103 (103)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999874

>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1

Probab=99.94  E-value=2.4e-27  Score=142.62  Aligned_cols=91  Identities=57%  Similarity=1.163  Sum_probs=83.3

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|++||++++.+.+.+||+|.++.+|..+..++|.|+.+++..+..|++++|.+||++|....|+++|||.++++++|++
T Consensus        22 ~C~~CHg~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~m~~~~~ls~~ei~  101 (112)
T 1ccr_A           22 KCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPXKYIPGTKMVFPGLXKPQERA  101 (112)
T ss_dssp             HTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHHHSTTCCCCCCCCCCHHHHH
T ss_pred             hcHHhCCCCCCCCCCCCCCccccccccccccCCccccHHHHhcCCccCHHHHHHHHhCccccCCCCCCCCCCCCCHHHHH
Confidence            59999999976556899999999999988889999999999889999999999999999888889999998887899999


Q ss_pred             HHHHHHhhccC
Q psy8407          82 DLIAYLEQASK   92 (92)
Q Consensus        82 ~liayL~sl~~   92 (92)
                      +|++||++++.
T Consensus       102 ~l~aYl~~l~~  112 (112)
T 1ccr_A          102 DLISYLKEATS  112 (112)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHcCC
Confidence            99999999863

>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1

Probab=99.94  E-value=3e-27  Score=141.01  Aligned_cols=90  Identities=53%  Similarity=1.026  Sum_probs=81.7

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER   80 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~   80 (92)
                      ++|++||++++. ++.+||+|.++.+|..+..++|.|+.+++..+..|++++|.+||++|....|++.|||.++++++|+
T Consensus        17 ~~C~~CH~~~g~-~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~Mp~~~~~~~~ei   95 (106)
T 1hro_A           17 TICITCHTDIKG-ANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKR   95 (106)
T ss_dssp             TTGGGTCCSSTT-CBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCCCCCCCCCHHHH
T ss_pred             cchhhhCCCCCC-CCCCCCCCCCccccccccCCCccccHHHHhcCcccCHHHHHHHHhCccccCCCCCCCCCCCCCHHHH
Confidence            369999999964 4678999999999988878899999999888999999999999999988888999998888789999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||++|+
T Consensus        96 ~~l~aYl~sl~  106 (106)
T 1hro_A           96 ADIIAYLETLK  106 (106)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999985

>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*

Probab=99.94  E-value=2.7e-27  Score=141.56  Aligned_cols=90  Identities=51%  Similarity=0.981  Sum_probs=82.6

Q ss_pred             CccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHH
Q psy8407           3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGD   82 (92)
Q Consensus         3 C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~   82 (92)
                      |++||++++.+.+.+||+|.++.+|..+..++|.|+.+++..++.|++++|.+||++|....+++.|||.++++++|+++
T Consensus        13 C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~Mp~~~l~s~~ei~~   92 (107)
T 1co6_A           13 CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMIFAGVKDEQKVSD   92 (107)
T ss_dssp             HHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSCCCCCCCCHHHHHH
T ss_pred             hHhhCCCCCCCCCCCCCCcccccCccccccCcccchHHHHhcCceecHHHHHHHHHCccccCCCCCCCCCCCCCHHHHHH
Confidence            99999999765678999999999999888899999999998899999999999999998888999999888878999999


Q ss_pred             HHHHHhhccC
Q psy8407          83 LIAYLEQASK   92 (92)
Q Consensus        83 liayL~sl~~   92 (92)
                      |++||++++.
T Consensus        93 l~aYl~sl~~  102 (107)
T 1co6_A           93 LIAYIKQFNA  102 (107)
T ss_dssp             HHHHHHTBCT
T ss_pred             HHHHHHHccc
Confidence            9999999863

>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*

Probab=99.94  E-value=2.7e-27  Score=142.64  Aligned_cols=89  Identities=39%  Similarity=0.809  Sum_probs=78.8

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHh---hhcCccccHHHHHHHHhCCCCCCCC--------CCCC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEAN---IKKGITWNKDTLFEYLENPKKYIPG--------TKMI   70 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~---~~~~~~~~~~~l~~~i~~P~~~~p~--------~~Mp   70 (92)
                      +|++||++++.+...+||+|.++.+|..+..++|.|+.++   +..++.|++++|.+||++|..++|+        +.||
T Consensus        13 ~Ca~CH~~~g~g~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~i~~p~~~~~g~~~~~~~~~~Mp   92 (112)
T 3c2c_A           13 KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLEKSGDPKAKSKMT   92 (112)
T ss_dssp             GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHCCTTCCCSCC
T ss_pred             hHHhhCCCCCCCCCCCCCCcccccCCcccccccccccHHHHhccccCcccCHHHHHHHHhChhhhcCCCcCCccccCCCC
Confidence            6999999997656688999999999999999999999988   4578899999999999999766555        7899


Q ss_pred             CCCCCCHHHHHHHHHHHhhcc
Q psy8407          71 FAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        71 ~~~~~~~~d~~~liayL~sl~   91 (92)
                      |. +++++||++|++||++|+
T Consensus        93 ~~-l~~~~di~~l~aYl~sl~  112 (112)
T 3c2c_A           93 FK-LTKDDEIENVIAYLKTLK  112 (112)
T ss_dssp             CC-CCCHHHHHHHHHHHTTCC
T ss_pred             Cc-CCCHHHHHHHHHHHHHcC
Confidence            76 777899999999999985

>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1

Probab=99.94  E-value=1.2e-26  Score=137.22  Aligned_cols=87  Identities=45%  Similarity=0.955  Sum_probs=79.0

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCC-CCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQ-APGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~-~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~   80 (92)
                      +|++||+++   ++.+||+|.++.+|..+. .++|.|+.+++..++.|++++|.+||++|....|++.|||.++++++|+
T Consensus        13 ~C~~CH~~~---~~~~gP~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~Mp~~~~~s~~di   89 (100)
T 1qn2_A           13 PCKACHNFE---KNGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTKMVFPGISDPKKV   89 (100)
T ss_dssp             GGGGTCCSS---SCSSSCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCSCCCCCCCCHHHH
T ss_pred             HHHHhcCCC---CCCCCCCcccccCccccccCCCccccHHHHhcCcccCHHHHHHHHhCcccccCCCCCCCCCCCCHHHH
Confidence            599999998   347899999999998877 7899999999999999999999999999988888999998888889999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||++++
T Consensus        90 ~~l~aYl~sl~  100 (100)
T 1qn2_A           90 DDIIAYLKTKS  100 (100)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhcC
Confidence            99999999985

>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1

Probab=99.93  E-value=1e-26  Score=141.50  Aligned_cols=91  Identities=40%  Similarity=0.843  Sum_probs=79.5

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhh---hcCccccHHHHHHHHhCCCCCCCC-----------
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLENPKKYIPG-----------   66 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~---~~~~~~~~~~l~~~i~~P~~~~p~-----------   66 (92)
                      ++|++||++++.+.+.+||+|.++.+|..+..++|.|+.++.   ..++.|++++|..||++|..++|+           
T Consensus        13 ~~C~~CH~~~~~~~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~g~~~~~~~l~~~i~~p~~~~~g~~~~~~~~~~~   92 (121)
T 1jdl_A           13 KKCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRKFLADAGHAEQA   92 (121)
T ss_dssp             GGTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHHHHHHHTTCGGGG
T ss_pred             hhhhhhCCCCCCCCCCCCCCchhhcCCccccccCccccHHHHhhhhcCCccCHHHHHHHHhCcccccCCcccccchhhcc
Confidence            379999999975567899999999999998899999999884   568899999999999999876665           


Q ss_pred             ---CCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407          67 ---TKMIFAGIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        67 ---~~Mp~~~~~~~~d~~~liayL~sl~~   92 (92)
                         +.|||. +++++|+++|++||++++.
T Consensus        93 ~~~~~Mp~~-l~~~~ei~~l~aYL~sl~~  120 (121)
T 1jdl_A           93 KGSTKMVFK-LPDEQERKDVVAYLKQFSP  120 (121)
T ss_dssp             SSCCSCCCC-CCCHHHHHHHHHHHGGGCC
T ss_pred             cccccCCcc-CCCHHHHHHHHHHHHHccc
Confidence               899977 7766999999999999863

>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1

Probab=99.93  E-value=6.1e-27  Score=146.13  Aligned_cols=88  Identities=34%  Similarity=0.730  Sum_probs=78.1

Q ss_pred             CCccCccccCC------CCCCCCCCccCccCCCCCCCCCCcchHHhh---hcCccccHHHHHHHHhCCCCCCCC------
Q psy8407           2 KCAQCHTIEAG------GAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLENPKKYIPG------   66 (92)
Q Consensus         2 ~C~~CH~~~~~------~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~---~~~~~~~~~~l~~~i~~P~~~~p~------   66 (92)
                      +|++||++++.      +.+.+||+|.++.+|..+..++|.|+.+++   +.++.|++++|.+||++|+.++|+      
T Consensus        33 ~C~~CH~~~~~~G~~~~~~~~~gP~L~~i~~r~~g~~~~~~ys~~l~~~~~~g~~w~~~~l~~~i~~p~~~~~g~~~~~~  112 (137)
T 1c2n_A           33 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKK  112 (137)
T ss_dssp             HHTTTCCBCCTTSCCSBCCCCSSCCCTTCTTSCSSCCSSCCCCHHHHHHHHTTCCCCHHHHHHHTTSTTHHHHHHHTCSC
T ss_pred             hHHhhCCCCCCCccccccccCCCcchhcccccccCCCCcccccHHHHhhhhcCccCCHHHHHHHHhCHHhhCCCcccccC
Confidence            59999999853      246789999999999999999999999884   688999999999999999988887      


Q ss_pred             --CCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407          67 --TKMIFAGIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        67 --~~Mp~~~~~~~~d~~~liayL~sl~~   92 (92)
                        +.|||.  ++++|+ +|++||+++++
T Consensus       113 ~~~~Mp~~--Lsd~e~-~liaYL~sl~~  137 (137)
T 1c2n_A          113 AKTGMAFK--LAKGGE-DVAAYLASVVK  137 (137)
T ss_dssp             CCCSCCCC--CSSSHH-HHHHHHHHHCC
T ss_pred             cCCCCCCC--CCcHHH-HHHHHHHHccC
Confidence              899986  558888 99999999975

>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*

Probab=99.92  E-value=2.4e-26  Score=139.25  Aligned_cols=86  Identities=38%  Similarity=0.847  Sum_probs=76.3

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhh---hcCccccHHHHHHHHhCCCCCCCC------------
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLENPKKYIPG------------   66 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~---~~~~~~~~~~l~~~i~~P~~~~p~------------   66 (92)
                      +|++||+.   +...+||+|.++.+|..++.++|.|+.++.   ..++.|++++|.+||++|+.++|+            
T Consensus        12 ~C~~CH~~---~~~~~GP~l~gi~~r~~~~~~~~~y~~~~~~~~~~g~~w~~~~L~~~l~~p~~~~~g~~~d~~~~~~~~   88 (114)
T 1i8o_A           12 QCMTCHRA---DKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKKFLTEKGKADQAV   88 (114)
T ss_dssp             HHTTTCCS---SSCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHHHTTCGGGCC
T ss_pred             hHHhhCCC---cccCcCcccccccccccccccchhhhHHHhhccccCccccHHHHHHHHHCHHhhCCCCccccccccccc
Confidence            69999993   246789999999999999999999999884   578899999999999999887777            


Q ss_pred             --CCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          67 --TKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        67 --~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                        +.|||. +++++|+++|++||++|+
T Consensus        89 ~~~~Mp~~-l~~~~d~~~liaYL~sl~  114 (114)
T 1i8o_A           89 GVTKMTFK-LANEQQRKDVVAYLATLK  114 (114)
T ss_dssp             SCCSSCCC-CCCHHHHHHHHHHHHTTC
T ss_pred             ccCcCCCC-CCCHHHHHHHHHHHHhcC
Confidence              899977 765699999999999985

>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}

Probab=99.77  E-value=8.7e-19  Score=102.35  Aligned_cols=79  Identities=24%  Similarity=0.402  Sum_probs=62.0

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC---CCCC-CCCCCCH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG---TKMI-FAGIKKP   77 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~---~~Mp-~~~~~~~   77 (92)
                      +|++||+.++  .+.+||+|.++.++.....++         .+..|++++|.++|++|....+.   +.|| |...+++
T Consensus        17 ~C~~CHg~~g--~~~~gp~l~~~~~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~g~~~~Mp~~~~~ls~   85 (99)
T 1w2l_A           17 ACFSCHSIDG--SRLVGPSFKGLYGSTRTFEDG---------TTAVADENYLRESILQPGAKVVQGYPNVMPASYASLSE   85 (99)
T ss_dssp             SGGGTCCSSS--CCSSSCCSTTCTTCEEEBTTS---------CEEECCHHHHHHHHHSTTSSCBTTSCSCCCGGGGGCCH
T ss_pred             ChhhcCCCCC--CCCCCCCcccccccccccCCC---------CcccCCHHHHHHHHHccCccccccccccCccccccCCH
Confidence            3999999985  357899999998876433222         23578999999999999875432   4798 6556679


Q ss_pred             HHHHHHHHHHhhcc
Q psy8407          78 QERGDLIAYLEQAS   91 (92)
Q Consensus        78 ~d~~~liayL~sl~   91 (92)
                      +|+++|++||++++
T Consensus        86 ~ei~~l~~yl~sl~   99 (99)
T 1w2l_A           86 REVAALIEFIKQQQ   99 (99)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999999985

>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}

Probab=99.74  E-value=2e-18  Score=106.92  Aligned_cols=71  Identities=30%  Similarity=0.448  Sum_probs=57.8

Q ss_pred             CCccCccccCCC----CCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCC-C---
Q psy8407           2 KCAQCHTIEAGG----AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFA-G---   73 (92)
Q Consensus         2 ~C~~CH~~~~~~----~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~-~---   73 (92)
                      +|++||++++.+    ++.+||+|.++..|                    |++++|..||.+|....+++.||.. .   
T Consensus        40 ~C~~CH~~~g~g~~~~~g~~gP~L~~~~~~--------------------~~~~~l~~~i~~p~~~~~~~~Mp~~~~~~~   99 (137)
T 2c1d_B           40 NCVACHQIGALPDVEFPGTIAPPLDGAGDR--------------------WTEAQLRGIVANAKMTFEGTFMPAFYKVDG   99 (137)
T ss_dssp             CGGGTBCCTTCTTCCSCCCSBCCSTTHHHH--------------------SCHHHHHHHHHHGGGTSTTCSSCCSSCCSC
T ss_pred             ChhhhcCCCCCCCccccccCCCCHhHhhhc--------------------cCHHHHHHHHcCccccCCCcccCccccccc
Confidence            799999998643    24789999987543                    4789999999999887788888832 1   


Q ss_pred             -------------------CCCHHHHHHHHHHHhhccC
Q psy8407          74 -------------------IKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        74 -------------------~~~~~d~~~liayL~sl~~   92 (92)
                                         .++++|+++|++||+++++
T Consensus       100 ~~~~g~~~~~~~~Mp~~~~~Ls~~ei~~l~aYl~sl~~  137 (137)
T 2c1d_B          100 FVRPGDGFSGKAGAEPLAPILNAQQIEDVVAFLVTLKE  137 (137)
T ss_dssp             CSSBBSTTSSSBCCSSCCCSSCHHHHHHHHHHHHTCCC
T ss_pred             cccccccccccccChhhhcCCCHHHHHHHHHHHHHccC
Confidence                               5679999999999999874

>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*

Probab=99.73  E-value=1.6e-18  Score=107.38  Aligned_cols=71  Identities=27%  Similarity=0.484  Sum_probs=56.7

Q ss_pred             CCccCccccCC----CCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC----
Q psy8407           2 KCAQCHTIEAG----GAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA----   72 (92)
Q Consensus         2 ~C~~CH~~~~~----~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~----   72 (92)
                      +|++||++++.    .++.+||+|.++..+                    |++++|.+||.+|....+++.|| |.    
T Consensus        41 ~C~~CH~~~g~~~~~~~~~~gP~L~~~~~~--------------------~~~~~l~~~i~~~~~~~~~~~Mp~~~~~~~  100 (138)
T 1h32_B           41 NCIACHEVTEMADAQFPGTVGPSLDGVAAR--------------------YPEAMIRGILVNSKNVFPETVMPAYYRVEG  100 (138)
T ss_dssp             CGGGTCCCTTC---CCCCSSSCCCTTHHHH--------------------SCHHHHHHHHHCHHHHSTTCSSCCTTCCSC
T ss_pred             ChhhccCCCCcCccccCCcCCCChhHhccc--------------------CCHHHHHHHHhCcccCCCCCccCccccccc
Confidence            79999999863    145789999997543                    57999999999998777777787 31    


Q ss_pred             ------------------CCCCHHHHHHHHHHHhhccC
Q psy8407          73 ------------------GIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        73 ------------------~~~~~~d~~~liayL~sl~~   92 (92)
                                        ..++++|+++|++||+++++
T Consensus       101 ~~~~~~~~~g~~~M~~~~~~Ls~~ei~~l~aYl~sl~~  138 (138)
T 1h32_B          101 FNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ  138 (138)
T ss_dssp             CSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC-
T ss_pred             cccccccccCcccCcccccCCCHHHHHHHHHHHHhcCC
Confidence                              14679999999999999874

>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*

Probab=99.73  E-value=4.6e-18  Score=96.37  Aligned_cols=72  Identities=21%  Similarity=0.254  Sum_probs=55.9

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC-CCCCCCCCCCHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG-TKMIFAGIKKPQE   79 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~-~~Mp~~~~~~~~d   79 (92)
                      ++|++||+.++.   .+||+|.++.++..               +..|++++|.++|+++....++ ..||.. .++++|
T Consensus         8 ~~C~~CHg~~g~---g~gP~l~~~~~~~~---------------~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~Lsd~e   68 (80)
T 1ayg_A            8 KGCMACHDLKAK---KVGPAYADVAKKYA---------------GRKDAVDYLAGKIKKGGSGVWGSVPMPPQ-NVTDAE   68 (80)
T ss_dssp             SSSGGGCCSSCC---SSSCCHHHHHHHCS---------------SCTTHHHHHHHHHHSCBCSSSCSCCBCCC-CCCHHH
T ss_pred             CCchhhcCCCCC---CCCCChHHHHHHhc---------------CCccHHHHHHHHHHcCCCCCCCCCCCCCC-CCCHHH
Confidence            369999999853   37999998876643               1236789999999999765444 349855 456999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      +++|++||++++
T Consensus        69 i~~l~~yl~~lk   80 (80)
T 1ayg_A           69 AKQLAQWILSIK   80 (80)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999985

>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}

Probab=99.69  E-value=5.5e-18  Score=100.57  Aligned_cols=69  Identities=28%  Similarity=0.591  Sum_probs=54.6

Q ss_pred             CCccCccccCC--CCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC--------------
Q psy8407           2 KCAQCHTIEAG--GAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP--------------   65 (92)
Q Consensus         2 ~C~~CH~~~~~--~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p--------------   65 (92)
                      +|++||+.++.  +.+.+||+|.++..|.                    +.++|.+||.+|..+.+              
T Consensus        13 ~C~~CH~~~g~~~g~~~~gP~L~~~~~~~--------------------~~~~l~~~i~~p~~~~~g~~~~~~~~~~g~~   72 (110)
T 2l4d_A           13 RCSSCHTVGNTEPGQPGIGPDLLGVTRQR--------------------DANWLVRWLKVPDQMLAEKDPLAMLLFEQYN   72 (110)
T ss_dssp             HTTTTCCSSCSBTTBCTTSCCCTTGGGTS--------------------CTTHHHHHTTSHHHHHHTTCHHHHHHHHHHT
T ss_pred             hhHHhcCCCCCCCCCCCCCCChhhhhccc--------------------CHHHHHHHHhChhhhccCcchHHHHHHhccC
Confidence            69999999975  4467899999987654                    46678888888765443              


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          66 GTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        66 ~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      .+.||..++ +++|+++|++||++++
T Consensus        73 ~~~Mp~~~L-s~~ei~~l~~yl~~~~   97 (110)
T 2l4d_A           73 RLAMPNMRL-GDAEVSALISYLEEET   97 (110)
T ss_dssp             SCCCCCCCC-CHHHHHHHHHHHHHHH
T ss_pred             cCcCCCCCC-CHHHHHHHHHHHHHcc
Confidence            357986665 5999999999999874

>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}

Probab=99.69  E-value=1.6e-17  Score=93.79  Aligned_cols=71  Identities=15%  Similarity=0.212  Sum_probs=53.9

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC-CCCCCCCCCCCCCCHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK-YIPGTKMIFAGIKKPQE   79 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~-~~p~~~Mp~~~~~~~~d   79 (92)
                      ++|++||+.++.   .+||+|.++.++...                 .++++|.++|+++.. ..+.+.||....++++|
T Consensus         8 ~~C~~CHg~~g~---~~gP~l~~~~~~~~~-----------------~~~~~l~~~i~~g~~~~~~~~~Mp~~~~Ls~~e   67 (79)
T 2d0s_A            8 KGCMACHAIDKK---LVGPSYKDVAKKYTE-----------------ADVPKLVEKVKKGGAGVWGPVPMPPHPQVAEAD   67 (79)
T ss_dssp             TTGGGTCCSSSC---SSSCCHHHHHHHCCG-----------------GGHHHHHHHHHHCBCSSSCSSCBCCCTTSCHHH
T ss_pred             CCChhhcCCCCC---CCCCCHHHHHHHHcc-----------------ccHHHHHHHHhcCCCCCCCCCCCCCCCCCCHHH
Confidence            479999999863   379999988665421                 156799999999864 33456788444566999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      +++|++||.+++
T Consensus        68 i~~l~~yl~~lk   79 (79)
T 2d0s_A           68 IEKIVRWVLTLK   79 (79)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCc
Confidence            999999999985

>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}

Probab=99.68  E-value=6.6e-17  Score=100.70  Aligned_cols=73  Identities=25%  Similarity=0.433  Sum_probs=58.7

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCC-CCCCCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGT-KMIFAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~-~Mp~~~~~~~~d~   80 (92)
                      +|.+||++++.+ +.+||+|.++.++...               ...++++|..||++|....+++ .||...+ +++|+
T Consensus        60 ~C~~CH~~~g~g-~~~gP~L~~~~~~~~~---------------~~~~~~~l~~~i~~~~~~~~g~~~Mp~~~L-s~~ei  122 (146)
T 3o0r_C           60 NCVGCHTLLGEG-AYFAPELGNVVGRRGG---------------EEGFNTFLQAWMKIQPLNVPGRRAMPQFHL-SEGQV  122 (146)
T ss_dssp             TGGGTSEETTEE-CSSSCBCSSGGGGTTH---------------HHHHHHHHHHHHHHCCCCCTTSCCCCCCCC-CHHHH
T ss_pred             CCcccCCCcCCC-CCCCCCchhhhhhccc---------------ccchHHHHHHHHhCcccCCCCCCCCCCCCc-CHHHH
Confidence            699999998643 4789999999876531               1124689999999998888885 7996665 69999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||+++.
T Consensus       123 ~~l~ayl~~l~  133 (146)
T 3o0r_C          123 DDLAEFLKWSS  133 (146)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=99.67  E-value=1.9e-17  Score=108.53  Aligned_cols=70  Identities=30%  Similarity=0.551  Sum_probs=56.7

Q ss_pred             CCccCcc--ccCC------------------------CCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHH
Q psy8407           2 KCAQCHT--IEAG------------------------GAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFE   55 (92)
Q Consensus         2 ~C~~CH~--~~~~------------------------~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~   55 (92)
                      +|.+||+  +++.                        |.+.+||||+++++|.                    +.+++.+
T Consensus        64 GC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~p~l~Gsgr~GPDLt~vG~R~--------------------s~~wl~~  123 (203)
T 3mk7_B           64 GCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGRY--------------------SDDWHRA  123 (203)
T ss_dssp             TGGGTCCCCCCSSHHHHHHHSSCCCGGGGTTCSSCCCCSBCSSCCCTTCTTTS--------------------CHHHHHH
T ss_pred             ChhhccCCCCCCCchhhhcccccccchhhhhccccccCCCCCCcChhhhhccC--------------------CHHHHHH
Confidence            6999999  6652                        2478999999998875                    5789999


Q ss_pred             HHhCCCCCCCCCCCC-CCC------------------------------------CCCHHHHHHHHHHHhhcc
Q psy8407          56 YLENPKKYIPGTKMI-FAG------------------------------------IKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        56 ~i~~P~~~~p~~~Mp-~~~------------------------------------~~~~~d~~~liayL~sl~   91 (92)
                      ||+||+.+.|++.|| |..                                    +...+|+++|||||++|.
T Consensus       124 ~I~dPq~v~PGS~MPay~~L~~~~~~~~~~~~~~~~l~~~gvpy~~~~i~~a~~~~~~~~e~~alvAYLq~Lg  196 (203)
T 3mk7_B          124 HLYNPRNVVPESKMPSYPWLVENTLDGKDTAKKMSALRMLGVPYTEEDIAGARDSVNGKTEMDAMVAYLQVLG  196 (203)
T ss_dssp             HHHCHHHHSTTCCCCCCTHHHHCBCCCTTHHHHHHHHHHTTCCCCHHHHTTSHHHHTTCBHHHHHHHHHTTTT
T ss_pred             HHhCccccCCCCCCCCCccccccccchHHHHHHHHHHHhcCCCCCHHHHHhHHHHhcchhHHHHHHHHHHHhC
Confidence            999999999999999 430                                    122358899999999985

>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*

Probab=99.67  E-value=3.6e-17  Score=92.67  Aligned_cols=72  Identities=18%  Similarity=0.266  Sum_probs=54.6

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC-CCCCCCCCCCCHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP-GTKMIFAGIKKPQE   79 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p-~~~Mp~~~~~~~~d   79 (92)
                      ++|++||+.++.   .+||+|.++.++..               +..+++++|.++|++|..... .+.||.. .++++|
T Consensus        10 ~~C~~CHg~~g~---g~gp~l~~~~~~~~---------------~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~ls~~e   70 (82)
T 2exv_A           10 KGCVACHAIDTK---MVGPAYKDVAAKFA---------------GQAGAEAELAQRIKNGSQGVWGPIPMPPN-AVSDDE   70 (82)
T ss_dssp             TTGGGTCCSSSC---CSSCCHHHHHHHHT---------------TCTTHHHHHHHHHHHCBSSSSSSSCBCCC-CCCHHH
T ss_pred             CCchhhcCCCCC---CCCcCHHHHHHHhc---------------CCcchHHHHHHHHHcCCCCCCCCCCCCCC-CCCHHH
Confidence            369999999863   37999998876542               123468999999999865433 3569855 456999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      +++|++||.+++
T Consensus        71 i~~l~~yl~~lk   82 (82)
T 2exv_A           71 AQTLAKWVLSQK   82 (82)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999999985

>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*

Probab=99.66  E-value=6.9e-17  Score=91.37  Aligned_cols=71  Identities=24%  Similarity=0.362  Sum_probs=54.7

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC-CCCCCCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG-TKMIFAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~-~~Mp~~~~~~~~d~   80 (92)
                      +|++||+.++.   .+||+|.++.++..+               ...+.++|..+|+++.....+ ..||.. .++++|+
T Consensus        11 ~C~~CHg~~g~---g~gP~l~~~~~~~~~---------------~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~ls~~ei   71 (82)
T 1cch_A           11 PCAACHSVDTK---MVGPALKEVAAKNAG---------------VEGAADTLALHIKNGSQGVWGPIPMPPN-PVTEEEA   71 (82)
T ss_dssp             THHHHSCSSSC---SSSCCHHHHHHHSSS---------------CGGGHHHHHHHHHTCCCSSSSSCCCCCC-SCCHHHH
T ss_pred             CChhhcCCCCC---CCCcChHHHHHHcCC---------------CchHHHHHHHHhhcCCCCCCCCCCCCCC-CCCHHHH
Confidence            69999999853   379999998766532               112478999999998754433 569855 5679999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||.+++
T Consensus        72 ~~l~~yl~~l~   82 (82)
T 1cch_A           72 KILAEWVLSLK   82 (82)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999985

>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*

Probab=99.65  E-value=2.5e-16  Score=104.22  Aligned_cols=72  Identities=21%  Similarity=0.435  Sum_probs=56.7

Q ss_pred             CCccCccccCCC--CCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHH---HHHhCCCCCCCCCCCC-CC--C
Q psy8407           2 KCAQCHTIEAGG--AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLF---EYLENPKKYIPGTKMI-FA--G   73 (92)
Q Consensus         2 ~C~~CH~~~~~~--~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~---~~i~~P~~~~p~~~Mp-~~--~   73 (92)
                      +|++||.+++.+  .+.+||+|.++....                  .|+++.|.   .+|.+|....+++.|| |.  +
T Consensus       124 ~CaaCHg~dG~G~~~G~~GP~Lag~~~~r------------------~~~~~~L~~~~~~I~~~~~~~p~~~MP~fa~~g  185 (208)
T 3oa8_B          124 NCYACHQLDPKEVSYGTLGPSLVGYGRER------------------NFSAEDAKIAFAKVYDAQASLACSSMPRFGVNG  185 (208)
T ss_dssp             CGGGTCCCSTTCCCCCSSSCCCTTHHHHT------------------TTCHHHHHHHHHHHHCGGGTSTTCSSCCTTTTT
T ss_pred             cchhhCCCCCcCCCCCCcCCCcccccccc------------------cCCHHHHHHHHHHhhCccCCCCCCCCCcccccC
Confidence            799999999764  257899999975411                  14666665   7899998888889998 54  4


Q ss_pred             CCCHHHHHHHHHHHhhcc
Q psy8407          74 IKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        74 ~~~~~d~~~liayL~sl~   91 (92)
                      .++++||++|++||.++.
T Consensus       186 ~LSdeEIaaLaaYL~s~~  203 (208)
T 3oa8_B          186 VLTEQQIKDVVAYLFDPE  203 (208)
T ss_dssp             SSCHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHHHccC
Confidence            677999999999999864

>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1

Probab=99.63  E-value=3.3e-17  Score=101.69  Aligned_cols=75  Identities=28%  Similarity=0.341  Sum_probs=54.2

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC-------------CC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG-------------TK   68 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~-------------~~   68 (92)
                      +|++||+ .  +.+.+||+|. + +     .++|.|+..     ..|+++.|.+||++|..+.++             ..
T Consensus        36 ~Ca~CH~-~--g~~~~gP~L~-l-g-----~~~~~~s~~-----~~~~~~~L~~~l~~p~~~~~~~~~~~~~p~~~~~~~  100 (135)
T 1e29_A           36 TCTQCHL-Q--GKTKTNNNVS-L-G-----LADLAGAEP-----RRDNVLALVEFLKNPKSYDGEDDYSELHPNISRPDI  100 (135)
T ss_dssp             HTHHHHG-G--GCBSSSSSCS-S-S-----HHHHHTSSS-----CCSSHHHHHHHHHSCBCTTSCSBCTTTSCCTTCTTT
T ss_pred             HHHHhcC-C--CCCCCCCCce-e-c-----ccccccccc-----ccCCHHHHHHHHhChhhccCccccccccccccchhc
Confidence            6999999 3  3568999998 5 4     133434322     349999999999999775432             24


Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          69 MIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        69 Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      ||....++++|+++|++||.+++
T Consensus       101 mp~~~~Lsd~ei~~laaYl~~~~  123 (135)
T 1e29_A          101 YPEMRNYTEDDIFDVAGYTLIAP  123 (135)
T ss_dssp             CGGGTTCCHHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHHHhcc
Confidence            66434456999999999999874

>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*

Probab=99.61  E-value=7.1e-17  Score=91.50  Aligned_cols=72  Identities=15%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCC-CCCCCCCCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYI-PGTKMIFAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~-p~~~Mp~~~~~~~~d~   80 (92)
                      +|++||+.++.   .+||+|.++..+..+               ...++++|.++|+++.... +.+.||....++++|+
T Consensus         9 ~C~~CHg~~g~---~~gp~l~~~~~~~~~---------------~~~~~~~l~~~i~~g~~~~~~~~~Mp~~~~Ls~~ei   70 (81)
T 1a56_A            9 NCIACHQVETK---VVGPALKDIAAKYAD---------------KDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADA   70 (81)
T ss_dssp             SHHHHBCSSCB---SSSCCHHHHHHHHTT---------------SSSHHHHHHHHHHHCBSSSSSSCCBCSCCSSSSHHH
T ss_pred             CchhhCCCCCC---cCCcCHHHHHHHhcC---------------CccHHHHHHHHHHcCCCCCCCCCCCCCCCCCCHHHH
Confidence            79999999853   478999987655321               1124789999999986543 2367884455669999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||.+++
T Consensus        71 ~~l~~yl~~lk   81 (81)
T 1a56_A           71 KALADWILTLK   81 (81)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhCC
Confidence            99999999985

>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*

Probab=99.59  E-value=7.3e-16  Score=85.46  Aligned_cols=62  Identities=21%  Similarity=0.371  Sum_probs=49.5

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|++||+.++.  +..||+|.++..                    .|+.++|..+|+++.     ..||. ..++++|++
T Consensus        10 ~C~~CHg~~g~--g~~gP~L~~~~~--------------------~~~~~~l~~~i~~g~-----~~Mp~-~~ls~~ei~   61 (71)
T 1c75_A           10 KCISCHGGDLT--GASAPAIDKAGA--------------------NYSEEEILDIILNGQ-----GGMPG-GIAKGAEAE   61 (71)
T ss_dssp             HTHHHHCTTSS--CSSSCCCTTGGG--------------------TSCHHHHHHHHHHCB-----TTBCS-CSSCHHHHH
T ss_pred             HHHHHcCCCCC--CCCCCCCccccc--------------------cCCHHHHHHHHHhCC-----CCCCC-CCCCHHHHH
Confidence            69999999864  356899997642                    247899999999875     24877 556699999


Q ss_pred             HHHHHHhhcc
Q psy8407          82 DLIAYLEQAS   91 (92)
Q Consensus        82 ~liayL~sl~   91 (92)
                      +|++||.+++
T Consensus        62 ~l~~yl~~~~   71 (71)
T 1c75_A           62 AVAAWLAEKK   71 (71)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHhcC
Confidence            9999999875

>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}

Probab=99.59  E-value=2.9e-16  Score=95.15  Aligned_cols=66  Identities=24%  Similarity=0.533  Sum_probs=52.4

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC------------CCCC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP------------GTKM   69 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p------------~~~M   69 (92)
                      +|++||+.++   ..+||+|.++.++.                    +.++|..+|++|....+            ++.|
T Consensus        44 ~C~~CH~~~g---~~~gP~l~~~~~~~--------------------~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~M  100 (124)
T 3cp5_A           44 YCTACHRLDE---RFIGPALRDVTKRR--------------------GPVYIMNVMLNPNGMIQRHPVMKQLVQEYGTMM  100 (124)
T ss_dssp             HTTTTCCSSS---CSSSCCCTTHHHHS--------------------CHHHHHHHHHCHHHHHHHCHHHHHHHHHHCSCC
T ss_pred             hhHHhCCCCC---CCCCCCcccccccc--------------------CHHHHHHHHhChHhhcccchhHHHHHhcCCCCC
Confidence            6999999974   46799999986553                    57899999999874322            3679


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc
Q psy8407          70 IFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        70 p~~~~~~~~d~~~liayL~sl~   91 (92)
                      |...+ +++|+++|++||.+++
T Consensus       101 p~~~L-s~~ei~~l~~Yl~~l~  121 (124)
T 3cp5_A          101 TDMAL-SEEQARAILEYLRQVA  121 (124)
T ss_dssp             CCCCC-CHHHHHHHHHHHHHHH
T ss_pred             CCCCC-CHHHHHHHHHHHHHhC
Confidence            97655 5999999999999985

>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1

Probab=99.56  E-value=2.2e-15  Score=91.70  Aligned_cols=75  Identities=16%  Similarity=0.265  Sum_probs=53.5

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC-------------CCCCCC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK-------------YIPGTK   68 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~-------------~~p~~~   68 (92)
                      +|++||+.++   ..+||+|....            +......+..|+.++|..||++|..             ..+++.
T Consensus        34 ~Ca~CHg~~g---~~~gP~l~~~~------------~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~   98 (129)
T 1f1c_A           34 ACAQCHALGV---TRTNPDVNLSP------------EALALATPPRDNIAALVDYIKNPTTYDGFVEISELHPSLKSSDI   98 (129)
T ss_dssp             HTHHHHGGGC---CTTCSSSCSSH------------HHHHTSSSCCCSHHHHHHHHHSCBCTTSCSBCTTTSCSTTCTTT
T ss_pred             hhHHhcCCCC---CCCCCCcccCH------------HHHHhcCCccchHHHHHHHHhCCcccccchhHhhhhhcccCCCC
Confidence            6999999863   35799987421            1111112346899999999999864             244568


Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          69 MIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        69 Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      ||....++++|+++|++||.+++
T Consensus        99 Mp~~~~Ls~~ei~~l~~Yl~~l~  121 (129)
T 1f1c_A           99 FPKMRNISEDDLYNVAGYILLQP  121 (129)
T ss_dssp             CGGGSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcC
Confidence            98435567999999999999875

>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}

Probab=99.30  E-value=4.9e-16  Score=109.00  Aligned_cols=79  Identities=24%  Similarity=0.368  Sum_probs=62.2

Q ss_pred             CCccCccccCCC-CCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGG-AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~-~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~   80 (92)
                      +|++||+.++.+ .+..||+|.++.+|.... .|          ...|++++|.++|++|+...+++.||..+.++++|+
T Consensus       246 ~Ca~CHg~~g~G~~~~~gP~L~gi~~r~~~~-~G----------~~~~~~~~L~~~I~~g~~~~~~~~MP~~~~LsdeEi  314 (337)
T 2yev_B          246 NCAACHGVARSMPPAVIGPELGLWGNRTSLG-AG----------IVENTPENLKAWIRDPAGMKPGVKMPGFPQLSEEDL  314 (337)
Confidence            699999999753 246899999987765311 11          135789999999999988888889983365679999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||++++
T Consensus       315 ~aL~aYL~sL~  325 (337)
T 2yev_B          315 DALVRYLEGLK  325 (337)
Confidence            99999999986

>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}

Probab=99.52  E-value=3e-15  Score=85.06  Aligned_cols=69  Identities=20%  Similarity=0.306  Sum_probs=50.8

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC----CCCCC-C---CC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP----GTKMI-F---AG   73 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p----~~~Mp-~---~~   73 (92)
                      +|++||+.++.   .+||+|..+.++..                  .++++|..||..+.....    .+.|| |   ..
T Consensus        11 ~C~~CHg~~g~---g~gp~l~~l~~~~~------------------~~~~~l~~~~~~~~~~~~~~~~~~~Mp~~~~~~~   69 (87)
T 2zxy_A           11 GCGSCHQANVD---TVGPSLKKIAQAYA------------------GKEDQLIKFLKGEAPAIVDPAKEAIMKPQLTMLK   69 (87)
T ss_dssp             TGGGTCCSSSC---SSSCCHHHHHHHTT------------------TCHHHHHHHHTTCSCCSSCGGGHHHHGGGGGGGG
T ss_pred             CchhhcCCCCC---CCCCChHHHHHHhc------------------CCHHHHHHHHhcccccccCCCCCCCCCCcccccc
Confidence            69999999853   46999988876642                  136789999988764332    24687 4   34


Q ss_pred             CCCHHHHHHHHHHHhhcc
Q psy8407          74 IKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        74 ~~~~~d~~~liayL~sl~   91 (92)
                      .++++|+++|++||.+++
T Consensus        70 ~ls~~ei~~l~~yl~sl~   87 (87)
T 2zxy_A           70 GLSDAELKALADFILSHK   87 (87)
T ss_dssp             GCCHHHHHHHHHHHHTC-
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            456999999999999985

>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1

Probab=99.51  E-value=1.6e-15  Score=86.94  Aligned_cols=71  Identities=21%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.+....+|+|.+...                    .|..+.|..|+..+....+++.|| |...++++||
T Consensus        13 ~C~~CHg~~g~g~~~~~P~L~~~~~--------------------~~~~~~l~~~~~g~~~~~~~~~Mp~~~~~ls~~ei   72 (87)
T 1cno_A           13 VCAACHGQNGISQVPIYPNLAGQKE--------------------QYLVAALKAYKAGQRQGGQAPVMQGQATALSDADI   72 (87)
T ss_dssp             GTHHHHCTTSCCSSTTSCCCTTCCH--------------------HHHHHHHHHHHTTCBCSTTHHHHHHHHTTCCHHHH
T ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHHHHHcCCcCCCcccccHHHHhhCCHHHH
Confidence            6999999987654457899986411                    123445555554443222234787 5455679999


Q ss_pred             HHHHHHHhhccC
Q psy8407          81 GDLIAYLEQASK   92 (92)
Q Consensus        81 ~~liayL~sl~~   92 (92)
                      ++|++||+++++
T Consensus        73 ~~l~~yl~~l~~   84 (87)
T 1cno_A           73 ANLAAYYASNPA   84 (87)
T ss_dssp             HHHHHHHHHSCT
T ss_pred             HHHHHHHHhCCc
Confidence            999999999864

>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*

Probab=99.49  E-value=1.7e-14  Score=81.39  Aligned_cols=65  Identities=20%  Similarity=0.338  Sum_probs=43.4

Q ss_pred             CCccCccccCCCCC-CCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHh----CCCCCCCCCCCC-CCCCC
Q psy8407           2 KCAQCHTIEAGGAH-KVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE----NPKKYIPGTKMI-FAGIK   75 (92)
Q Consensus         2 ~C~~CH~~~~~~~~-~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~----~P~~~~p~~~Mp-~~~~~   75 (92)
                      .|++||..++.+.. ..+|+|.+.                        +++++.+.|.    ......+++.|| |...+
T Consensus         9 ~Ca~CHg~~g~g~~~~~~P~L~g~------------------------~~~~~~~~l~~~~~g~~~~~~~~~Mp~~~~~L   64 (79)
T 1c53_A            9 SCVGCHGADGSKQAMGVGHAVKGQ------------------------KADELFKKLKGYADGSYGGEKKAVMTNLVKRY   64 (79)
T ss_pred             HHHhccCCCCCCCCCCCCCcCCCC------------------------CHHHHHHHHHHHHcCCCCCCcccchHHHHhhC
Confidence            39999999975433 568988763                        2333444443    322223346798 54556


Q ss_pred             CHHHHHHHHHHHhhc
Q psy8407          76 KPQERGDLIAYLEQA   90 (92)
Q Consensus        76 ~~~d~~~liayL~sl   90 (92)
                      +++|+++|++||++|
T Consensus        65 s~~ei~~l~~Yl~sl   79 (79)
T 1c53_A           65 SDEEMKAMADYMSKL   79 (79)
T ss_pred             CHHHHHHHHHHHHhC
Confidence            799999999999985

>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}

Probab=99.44  E-value=1.7e-14  Score=84.82  Aligned_cols=67  Identities=22%  Similarity=0.359  Sum_probs=44.3

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCC---CCC-CCCCCCH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGT---KMI-FAGIKKP   77 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~---~Mp-~~~~~~~   77 (92)
                      +|++||+.++.+....+|+|.+..                    ..|..+.|..|...+.   +++   .|| |...+++
T Consensus        33 ~C~~CHg~~g~g~~~~~p~L~g~~--------------------~~~~~~~l~~~~~g~~---~~~~~~~Mp~~~~~ls~   89 (103)
T 2zzs_A           33 VCAACHGADGNATIPGYPNLKGQN--------------------EQYIVSSIKAYKNKER---SGGLAAVMQAQASLLSD   89 (103)
T ss_dssp             TTHHHHCTTSCCCSTTCCCCTTCC--------------------HHHHHHHHHHHHTTCB---CSTTHHHHHHHHTTCCH
T ss_pred             HHHhhcCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCC---CCCcccchHHHHhhCCH
Confidence            699999999765556789998631                    0112334444433332   333   788 5455679


Q ss_pred             HHHHHHHHHHhhcc
Q psy8407          78 QERGDLIAYLEQAS   91 (92)
Q Consensus        78 ~d~~~liayL~sl~   91 (92)
                      +|+++|++||++++
T Consensus        90 ~ei~~l~~yl~~l~  103 (103)
T 2zzs_A           90 DDIANLAAYYSSLK  103 (103)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999999975

>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}

Probab=99.43  E-value=1.8e-13  Score=87.64  Aligned_cols=68  Identities=22%  Similarity=0.235  Sum_probs=51.7

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||+.++.  +..||+|.+.....                +..|+.++|..+|+++..    ..|| |...++++||
T Consensus        58 ~Ca~CHg~~g~--G~~gP~L~~~~~~~----------------~~~~~~~~l~~~i~~G~~----~~Mp~~~~~Ls~~ei  115 (170)
T 2d0w_A           58 SCSGCHGHIGE--GKVGPGLNDSYWTY----------------PKNTTDKGLFETIFGGAN----GMMGPHGQDLELDNM  115 (170)
T ss_dssp             HTHHHHCTTSC--CSSSCCSSSSCCSS----------------GGGGSHHHHHHHHHHCCS----TTCCCCTTTSCHHHH
T ss_pred             hhHHhCCCCCC--CCCCCCCccchhhc----------------cccCCHHHHHHHHHcCCC----CCCCCCCCCCCHHHH
Confidence            69999999864  35689998753221                124688999999998752    3687 5556779999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      .+|++||+++.
T Consensus       116 ~~l~aYl~sl~  126 (170)
T 2d0w_A          116 LKLIAWIRHIQ  126 (170)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHcc
Confidence            99999999985

>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*

Probab=99.43  E-value=1.8e-13  Score=77.42  Aligned_cols=60  Identities=23%  Similarity=0.406  Sum_probs=46.5

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC-CCCCHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA-GIKKPQE   79 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~-~~~~~~d   79 (92)
                      +|++||+.++    ..||+|.+.                      .|++++|..+|+++..     .|| |. ..++++|
T Consensus        14 ~C~~CHg~~g----g~~P~L~~~----------------------~~~~~~l~~~i~~g~~-----~Mp~~~~~~ls~~e   62 (80)
T 1wve_C           14 VCGHCHKPEV----GVGPVLEGR----------------------GLPEAYIKDIVRNGFR-----AMPAFPASYVDDES   62 (80)
T ss_dssp             TTHHHHSTTT----CSSCCCTTS----------------------CCCHHHHHHHHHHCBT-----TBCCCCTTTSCHHH
T ss_pred             HHHHhCCCCC----CCCCCCCCC----------------------CCCHHHHHHHHHhCcC-----CCCCCcccCCCHHH
Confidence            7999999862    379999761                      1478999999998752     476 42 4567999


Q ss_pred             HHHHHHHHhhccC
Q psy8407          80 RGDLIAYLEQASK   92 (92)
Q Consensus        80 ~~~liayL~sl~~   92 (92)
                      +++|++||.++++
T Consensus        63 i~~l~~yl~~~~~   75 (80)
T 1wve_C           63 LTQVAEYLSSLPA   75 (80)
T ss_dssp             HHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHCcC
Confidence            9999999999864

>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1

Probab=99.42  E-value=3e-13  Score=86.86  Aligned_cols=68  Identities=24%  Similarity=0.261  Sum_probs=51.1

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.  +..||+|.+....         |       +..|+.+.|..+|+++.   + ..|| |.+.++++||
T Consensus        64 ~Ca~CHg~~g~--G~~gP~L~~~~~~---------~-------~~~~~~~~l~~~i~~G~---~-g~MP~~~~~Lsd~ei  121 (172)
T 2c8s_A           64 SCSGCHGHLAE--GKLGPGLNDNYWT---------Y-------PSNTTDVGLFATIFGGA---N-GMMGPHNENLTPDEM  121 (172)
T ss_dssp             HTHHHHCTTSS--CSSSCCSSSSCCS---------S-------GGGGSHHHHHHHHHTCT---T-SSSCSCCCCSCHHHH
T ss_pred             hhHHhCCCCCC--CCCCCCCcccccc---------c-------cccCCHHHHHHHHHhCC---C-CCCCCCCCCCCHHHH
Confidence            69999999864  3568999873211         1       12468899999999874   2 3687 5556779999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      .+|++||+++.
T Consensus       122 ~~laaYl~sl~  132 (172)
T 2c8s_A          122 LQTIAWIRHLY  132 (172)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            99999999985

>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*

Probab=99.41  E-value=3.4e-13  Score=84.21  Aligned_cols=68  Identities=25%  Similarity=0.288  Sum_probs=50.5

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||+.++.  +..||+|.+....         |       +..|+.+.|..+|+++.   ++ .|| |.+.++++|+
T Consensus        56 ~Ca~CHg~~g~--g~~gP~L~~~~~~---------~-------~~~~~~~~l~~~i~~G~---~~-~Mp~~~~~ls~~ei  113 (147)
T 2gc4_D           56 MCSGCHGHYAE--GKIGPGLNDAYWT---------Y-------PGNETDVGLFSTLYGGA---TG-QMGPMWGSLTLDEM  113 (147)
T ss_dssp             HTHHHHCTTSS--CSSSCCCSSSCCS---------S-------GGGGSHHHHHHHHHHCC---ST-TCCCCTTTSCHHHH
T ss_pred             hcHHhCCCCCC--CCCCCCCCccccc---------c-------cCcCCHHHHHHHHHcCC---CC-CCCCCCCCCCHHHH
Confidence            69999999864  3568999863211         1       12357899999999874   23 687 5556779999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||+++.
T Consensus       114 ~~l~~Yl~~l~  124 (147)
T 2gc4_D          114 LRTMAWVRHLY  124 (147)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            99999999985

>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*

Probab=99.39  E-value=6.9e-14  Score=79.27  Aligned_cols=68  Identities=19%  Similarity=0.167  Sum_probs=48.4

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||+.++. +...+|+|.+..-+.                -..++.+.|..+|+++.     ..|| |.+.++++|+
T Consensus        14 ~C~~CHg~~~~-~~~~~p~l~~~~~~~----------------~~~~~~~~~~~~i~~g~-----~~Mp~~~~~ls~~ei   71 (86)
T 3ph2_B           14 NCAACHAGGIN-LVNAEKTLKKEALEK----------------FGMNSIVAITTVVTNGK-----AGMPAFKGRLTDDQI   71 (86)
T ss_dssp             HTHHHHCSSSC-TTCSSSSCCHHHHHH----------------TTCCSHHHHHHHHHHCB-----TTBCCCTTTSCHHHH
T ss_pred             HhHHhCCCCCC-CCCCCCccChhhHHh----------------ccCCCHHHHHHHHHhCC-----CCCCCcccCCCHHHH
Confidence            69999998753 345678876521110                02347889999999875     3576 5456779999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||.++.
T Consensus        72 ~~l~~yl~~~~   82 (86)
T 3ph2_B           72 AAVAAYVLDQA   82 (86)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999874

>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*

Probab=99.36  E-value=1.1e-13  Score=78.31  Aligned_cols=68  Identities=21%  Similarity=0.223  Sum_probs=45.8

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||+.++.+   .+|.+..+..             .+.. -..++.+.|..+|+++.     ..|| |...++++|+
T Consensus        13 ~C~~CHg~~g~g---~~~~~~~~~~-------------~l~~-~~~~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~ei   70 (85)
T 1gdv_A           13 NCAACHAGGNNA---IMPDKTLKKD-------------VLEA-NSMNTIDAITYQVQNGK-----NAMPAFGGRLVDEDI   70 (85)
T ss_dssp             HTHHHHGGGCCS---SSTTSCCCHH-------------HHHH-TTCCSHHHHHHHHHHCB-----TTBCCCTTTSCHHHH
T ss_pred             hhHhhCCCCcCC---CCCCCCCCcH-------------HHHH-ccCCCHHHHHHHHHhCc-----CCCCCCCCCCCHHHH
Confidence            699999998532   3444322211             1111 12457889999999874     4677 4446679999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||.+++
T Consensus        71 ~~l~~yl~~~~   81 (85)
T 1gdv_A           71 EDAANYVLSQS   81 (85)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*

Probab=99.33  E-value=2e-13  Score=77.93  Aligned_cols=72  Identities=24%  Similarity=0.226  Sum_probs=47.8

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||+.++.+ ...||+|....-..  ...+|          ...+++.|..+|+++.     ..|| |.+.++++|+
T Consensus        13 ~C~~CHg~~g~g-~~~~P~L~~~~~~~--~l~~~----------~~~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~ei   74 (89)
T 1f1f_A           13 NCAACHMGGRNV-IVANKTLSKSDLAK--YLKGF----------DDDAVAAVAYQVTNGK-----NAMPGFNGRLSPLQI   74 (89)
T ss_dssp             HTHHHHGGGCCS-SSTTCCSSHHHHHH--HSTTT----------TTCHHHHHHHHHHHCB-----TTBCCCTTTSCHHHH
T ss_pred             HhHHhCCCCCCC-CcCCCCCCHHHHHH--Hhhcc----------CccCHHHHHHHHHcCC-----CCCCccccCCCHHHH
Confidence            699999999753 34689995310000  00000          0123788999998874     4577 5555679999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||++++
T Consensus        75 ~~l~~yl~~~~   85 (89)
T 1f1f_A           75 EDVAAYVVDQA   85 (89)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*

Probab=99.33  E-value=3.8e-12  Score=74.61  Aligned_cols=73  Identities=19%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCC-------CCC-CCC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGT-------KMI-FAG   73 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~-------~Mp-~~~   73 (92)
                      +|++||..++.+ ...||.+.               .+.+...+ .|+.+.|..+|+++...+|..       .|| |..
T Consensus        15 ~Ca~CHg~~g~g-~~~g~~~~---------------~p~l~~~~-~~~~~~l~~~i~~g~~~Mp~~~~~~~~~~M~~~~~   77 (105)
T 2ce0_A           15 ACAACHDTGGNI-IQPGATLF---------------TKDLERNG-VDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGP   77 (105)
T ss_dssp             HTTTTSGGGCCS-SSTTCCSS---------------HHHHHHTT-CCSHHHHHHHHHHCBTTBCBCBTTCCSGGGBCSSC
T ss_pred             HHHHhCCCCCCc-CCCCcccC---------------CcchhhcC-CCCHHHHHHHHHhCcCCCCcccccccccccccccC
Confidence            699999999643 23454331               11121111 267899999999876544432       243 445


Q ss_pred             CCCHHHHHHHHHHHhhcc
Q psy8407          74 IKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        74 ~~~~~d~~~liayL~sl~   91 (92)
                      .++++||++|++||+++.
T Consensus        78 ~ls~~ei~~l~~yl~~~~   95 (105)
T 2ce0_A           78 RLQDEEIKLLAEFVKFQA   95 (105)
T ss_dssp             CBCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            667999999999999874

>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}

Probab=99.32  E-value=7.6e-13  Score=75.19  Aligned_cols=40  Identities=18%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             cccHHHHHHHHhCCCCCCCCCCCC-CCC-CCCHHHHHHHHHHHhhcc
Q psy8407          47 TWNKDTLFEYLENPKKYIPGTKMI-FAG-IKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        47 ~~~~~~l~~~i~~P~~~~p~~~Mp-~~~-~~~~~d~~~liayL~sl~   91 (92)
                      .|+.+.|..+|+++.     ..|| |.. .++++|+++|++||.++.
T Consensus        43 ~~~~~~l~~~i~~g~-----~~Mp~~~~~~ls~~ei~~l~~yi~~~~   84 (85)
T 3cu4_A           43 IRTVRDVAAYIRNPG-----PGMPAFGEAMIPPADALKIGEYVVASF   84 (85)
T ss_dssp             CCSHHHHHHHTTSCC-----TTSCCCCTTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHcCC-----CCCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence            467899999999864     2487 554 577999999999999874

>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1

Probab=99.30  E-value=1.7e-12  Score=74.52  Aligned_cols=69  Identities=16%  Similarity=0.120  Sum_probs=46.6

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhc-CccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKK-GITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQE   79 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~-~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d   79 (92)
                      +|++||+.++.+ ...+|+|....               +... ...+++++|..+|+++.     ..|| |.+.++++|
T Consensus        16 ~C~~CHg~~g~g-~~~~p~l~~~~---------------~~~~~~~~~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~e   74 (91)
T 1ls9_A           16 NCAACHLGGNNS-VLADKTLKKDA---------------IEKYLEGGLTLEAIKYQVNNGK-----GAMPAWADRLDEDD   74 (91)
T ss_dssp             HTHHHHGGGCCS-SSTTSCSSHHH---------------HHHHSTTCSCHHHHHHHHHHCB-----TTBCCCTTTSCHHH
T ss_pred             HhHHhCCCCCCC-CCCCCCCCchh---------------HHHhccCCCCHHHHHHHHHcCc-----CCCcchhhhCCHHH
Confidence            699999987542 33456665310               0000 01246889999999874     4577 555677999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      +++|++||+++.
T Consensus        75 i~~l~~yl~~~~   86 (91)
T 1ls9_A           75 IEAVSNYVYDQA   86 (91)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999999874

>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1

Probab=99.29  E-value=5.1e-13  Score=76.03  Aligned_cols=70  Identities=17%  Similarity=0.255  Sum_probs=46.7

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||+.++   ..+||++....+...    .|.        ....+.+.|..+|+++.     ..|| |...++++|+
T Consensus        13 ~C~~CHg~~g---~~~~p~~~~~~~~~~----~~l--------~~~~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~ei   72 (88)
T 3dmi_A           13 NCAACHAGGQ---NVIMPEKTLEKEALD----QYL--------AGGRTEKSIISQVTGGK-----NAMPAFGGRLSDEEI   72 (88)
T ss_dssp             HTHHHHGGGC---CSSSTTSCSSHHHHH----HHS--------TTCSSHHHHHHHHHHCB-----TTBCCCTTTSCHHHH
T ss_pred             HHHHhCCCCC---CCcCCCCCCCHHHHH----HHH--------hcCCCHHHHHHHHHcCc-----CCCCCcCCCCCHHHH
Confidence            6999999553   457887764322110    000        00236788999999875     3577 4445679999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||+++.
T Consensus        73 ~~l~~yl~~~~   83 (88)
T 3dmi_A           73 ANVAAYVLASA   83 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999874

>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*

Probab=99.28  E-value=1.1e-12  Score=80.75  Aligned_cols=45  Identities=13%  Similarity=0.130  Sum_probs=33.8

Q ss_pred             cccHHHHHHHHhCCCCCC-------------CCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          47 TWNKDTLFEYLENPKKYI-------------PGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        47 ~~~~~~l~~~i~~P~~~~-------------p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      .|+.++|..+|++|..+.             +...||....++++||++|++||++++
T Consensus        66 ~~~~~~l~~~l~~p~~~~~~~~~~~~~~~~~~~~~MP~~~~Lsd~ei~alaaYl~~~~  123 (137)
T 1mz4_A           66 RDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEP  123 (137)
T ss_dssp             CSSHHHHHHHHHSCBCTTSSSBCTTTSCCGGGTTTSGGGTTCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCchhhcccchhhhcccccccCCCCCCCCCCCHHHHHHHHHHHHHcc
Confidence            356889999999985432             235798324356999999999999874

>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*

Probab=99.28  E-value=6e-13  Score=81.65  Aligned_cols=74  Identities=19%  Similarity=0.160  Sum_probs=51.2

Q ss_pred             CccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC-------CCCCCCCCCCCCC
Q psy8407           3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK-------YIPGTKMIFAGIK   75 (92)
Q Consensus         3 C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~-------~~p~~~Mp~~~~~   75 (92)
                      |++||..++.+....+|+|.+......               ...+++++|..+|.++..       ..+++.||....+
T Consensus        11 Ca~CHg~~g~G~~~~~P~L~~~~~~~~---------------~~~~~~~~l~~~i~~g~~g~~~~~g~~~~~~MP~~~~L   75 (131)
T 1c52_A           11 CAGCHQQNGQGIPGAFPPLAGHVAEIL---------------AKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSFAQL   75 (131)
T ss_dssp             HHHHHCTTSCCBTTTBCCCTTHHHHHH---------------TSTTHHHHHHHHHHHCEEEEEEETTEEEEEEECCCTTS
T ss_pred             HHHhcCCCCCCCCCCCCCCCCCccccc---------------cccCCHHHHHHHHHhcccccccccCCccCCCCCCcccC
Confidence            999999997654456899987522110               012368899999987642       1123578844366


Q ss_pred             CHHHHHHHHHHHhhcc
Q psy8407          76 KPQERGDLIAYLEQAS   91 (92)
Q Consensus        76 ~~~d~~~liayL~sl~   91 (92)
                      +++||.+|++||+++.
T Consensus        76 sd~ei~~l~~Yl~~~~   91 (131)
T 1c52_A           76 KDEEIAAVLNHIATAW   91 (131)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHc
Confidence            7999999999999874

>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*

Probab=99.26  E-value=8.6e-13  Score=84.65  Aligned_cols=70  Identities=20%  Similarity=0.285  Sum_probs=47.7

Q ss_pred             CCccCccccCCCCCC-CCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCC-CCC-CCCCCCHH
Q psy8407           2 KCAQCHTIEAGGAHK-VGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGT-KMI-FAGIKKPQ   78 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~-~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~-~Mp-~~~~~~~~   78 (92)
                      +|++||+.++.+... .+|+|.+..                    ..|..+.|..|........+.. .|| |...++++
T Consensus       118 ~C~~CHg~~g~g~~~~~~P~L~g~~--------------------~~~~~~~l~~~~~g~~~~~~~~~~Mp~~~~~Ls~~  177 (190)
T 1m70_A          118 ACTGCHAPNGVGNDLAGFPKLGGQH--------------------AAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNK  177 (190)
T ss_dssp             CSHHHHCTTSCCBGGGTBCCCTTCC--------------------HHHHHHHHHHHHHTSCCTTTTTCHHHHHHTTCCHH
T ss_pred             chhhcCCCCCCCCCCCCCCCcCCCC--------------------HHHHHHHHHHHHhCCCCCCCccccHHHHHHhCCHH
Confidence            799999999754332 589998742                    1234566666665433222333 698 54556799


Q ss_pred             HHHHHHHHHhhcc
Q psy8407          79 ERGDLIAYLEQAS   91 (92)
Q Consensus        79 d~~~liayL~sl~   91 (92)
                      ||++|++||++|+
T Consensus       178 ei~~l~~Yl~sl~  190 (190)
T 1m70_A          178 DIEALSSYIQGLH  190 (190)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCc
Confidence            9999999999985

>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*

Probab=99.26  E-value=2e-12  Score=73.93  Aligned_cols=39  Identities=18%  Similarity=0.251  Sum_probs=31.8

Q ss_pred             ccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHhhcc
Q psy8407          48 WNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        48 ~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~~~liayL~sl~   91 (92)
                      |+.+.|..+|+++.     ..|| |...++++|+++|++||+++.
T Consensus        44 ~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~ei~~l~~yl~~~~   83 (90)
T 1cyi_A           44 FKVESIIYQVENGK-----GAMPAWADRLSEEEIQAVAEYVFKQA   83 (90)
T ss_dssp             SSHHHHHHHHHHCB-----TTBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCC-----CCCCcccccCCHHHHHHHHHHHHhcc
Confidence            57889999999863     4687 555567999999999999874

>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*

Probab=99.25  E-value=3e-12  Score=72.98  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=31.7

Q ss_pred             ccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHhhcc
Q psy8407          48 WNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        48 ~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~~~liayL~sl~   91 (92)
                      ++.+.|..+|+++.     ..|| |...++++|+++|++||+++.
T Consensus        45 ~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~ei~~l~~yl~~~~   84 (89)
T 1c6r_A           45 FNLEAITYQVENGK-----GAMPAWSGTLDDDEIAAVAAYVYDQA   84 (89)
T ss_dssp             SSHHHHHHHHHHCB-----TTBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCC-----CCCCCCCCcCCHHHHHHHHHHHHHHc
Confidence            46889999999874     4577 545667999999999999875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=9.3e-13  Score=98.65  Aligned_cols=67  Identities=18%  Similarity=0.258  Sum_probs=53.6

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.+.+..+|+|.++..                     ++.+.|.++|+++....+  .|| |...++++||
T Consensus       603 ~C~~CHg~~g~g~~~~~P~L~~~~~---------------------~~~~~l~~~i~~g~~~~~--~Mp~~~~~ls~~ei  659 (677)
T 1kb0_A          603 NCVFCHGVPGVDRGGNIPNLGYMDA---------------------SYIENLPNFVFKGPAMVR--GMPDFTGKLSGDDV  659 (677)
T ss_dssp             HTHHHHCSTTTSCCSSSCCGGGSCH---------------------HHHHTHHHHHSSCTTGGG--TCCCCTTTSCTTHH
T ss_pred             hhhhhCCCCCcCCCCCCCCccccCc---------------------ccHHHHHHHHHcCCCCCC--CCCcccccCCHHHH
Confidence            5999999998655678999998642                     367899999999875443  487 6555679999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||++++
T Consensus       660 ~~l~~Yl~~l~  670 (677)
T 1kb0_A          660 ESLKAFIQGTA  670 (677)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999999985

>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}

Probab=99.23  E-value=7.3e-13  Score=75.56  Aligned_cols=67  Identities=18%  Similarity=0.214  Sum_probs=43.2

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCC-CCCHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAG-IKKPQE   79 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~-~~~~~d   79 (92)
                      +|++||+.++.+. ...|+|.+..             ..+     ..+.+.|...|++..     ..|| |.. .++++|
T Consensus        19 ~C~~CHg~~~~g~-~~~~~l~~~~-------------~~~-----~~~~~~~~~~i~~G~-----~~Mp~~~~~~ls~~e   74 (87)
T 2zon_G           19 ACVVCHASGVANA-PKLGDKQAWA-------------PFL-----AQGADALLATVLKGK-----GAMPPRGGTAADEAT   74 (87)
T ss_dssp             TTHHHHTTTGGGC-CCTTCHHHHH-------------HHH-----HHCHHHHHHHHHHCB-----TTBCGGGGCCCCHHH
T ss_pred             HhHHHcCCCCCCC-CCCCCHHHHH-------------HHH-----hcCHHHHHHHHHcCc-----CCCCCCCCCCCCHHH
Confidence            6999999985431 1124443211             111     114667777887754     2587 544 567999


Q ss_pred             HHHHHHHHhhccC
Q psy8407          80 RGDLIAYLEQASK   92 (92)
Q Consensus        80 ~~~liayL~sl~~   92 (92)
                      +++|++||.+++|
T Consensus        75 i~~l~~yl~~~~~   87 (87)
T 2zon_G           75 LRAAVAYMMDAAR   87 (87)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999875

>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0

Probab=99.22  E-value=1.5e-11  Score=72.23  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=30.2

Q ss_pred             ccHHHHHHHHhCCCCCCCCCCCC-CCC-CCCHHHHHHHHHHHhhc
Q psy8407          48 WNKDTLFEYLENPKKYIPGTKMI-FAG-IKKPQERGDLIAYLEQA   90 (92)
Q Consensus        48 ~~~~~l~~~i~~P~~~~p~~~Mp-~~~-~~~~~d~~~liayL~sl   90 (92)
                      .+.+.|...|+++.     ..|| |.. .++++||++|++||++.
T Consensus        58 ~~~~~l~~~i~~G~-----~~MP~~~~~~Lsd~ei~~l~~Yi~~~   97 (99)
T 3dp5_A           58 RTVRDVAAYIRNPG-----PGMPAFGEAMIPPADALKIGEYVVAS   97 (99)
T ss_dssp             CSHHHHHHHTTSCC-----TTSCCCCTTTSCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHcCC-----CCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence            46889999999873     4587 554 57799999999999863

>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1

Probab=99.22  E-value=6.7e-12  Score=70.58  Aligned_cols=64  Identities=22%  Similarity=0.327  Sum_probs=44.5

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.+    +|+|.++.....                ...+.+.|...|++..     ..|| |...++++||
T Consensus        13 ~C~~CHg~~g~g----~P~l~~~~~~~~----------------~~~~~~~l~~~i~~G~-----~~Mp~~~~~Lsd~ei   67 (78)
T 1gks_A           13 TCSSCHDRGVAG----APELNAPEDWAD----------------RPSSVDELVESTLAGK-----GAMPAYDGRADREDL   67 (78)
T ss_dssp             CSHHHHTTTGGG----CCCTTCHHHHHT----------------SCCCHHHHHHHHHHCB-----TTBCCCBTTBCHHHH
T ss_pred             chhhhCCCCCCC----CCCCCCHHHhhh----------------ccCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHH
Confidence            799999998532    688875421100                0125788888888763     3587 5455679999


Q ss_pred             HHHHHHHhhc
Q psy8407          81 GDLIAYLEQA   90 (92)
Q Consensus        81 ~~liayL~sl   90 (92)
                      ++|++||++.
T Consensus        68 ~~l~~yi~~~   77 (78)
T 1gks_A           68 VKAIEYMLST   77 (78)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999999863

>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1

Probab=99.20  E-value=4.4e-12  Score=80.31  Aligned_cols=43  Identities=14%  Similarity=0.188  Sum_probs=32.5

Q ss_pred             cHHHHHHHHhCCCCC-------------CCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          49 NKDTLFEYLENPKKY-------------IPGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~-------------~p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      +.++|..+|++|..+             .....||....++++|+++|++||.+++
T Consensus        94 ~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~~~Mp~~~~Lsd~ei~~laaYl~sl~  149 (163)
T 1w5c_T           94 NIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEP  149 (163)
T ss_dssp             SHHHHHHHHHSCBCTTSSSBCTTTSCCSTTTTTSGGGTTCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhCccccccchhhhhccccccccCcCCCCCCCCHHHHHHHHHHHHHcc
Confidence            678999999998541             1224688335567999999999999875

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=99.19  E-value=1.2e-11  Score=85.66  Aligned_cols=69  Identities=19%  Similarity=0.179  Sum_probs=50.6

Q ss_pred             CCccCccccCCCCCCC-CCCccC-ccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHH
Q psy8407           2 KCAQCHTIEAGGAHKV-GPNLHG-LIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQ   78 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~-GP~L~~-i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~   78 (92)
                      +|++||+.++.+.... +|+|.+ .....                  ..++++|.+.|+++.   . ..|| +...++++
T Consensus       232 ~Ca~CHg~~g~G~~~~~~P~L~~~~~~~~------------------~~~~~~l~~~i~~g~---~-g~MP~~~~~Ls~~  289 (311)
T 3mk7_C          232 TCAVCHGQGGEGMAALGAPKLNSAAGWIY------------------GSSLGQLQQTIRHGR---N-GQMPAQQQYLGDD  289 (311)
T ss_dssp             TTHHHHCTTSCCBTTTTBCCSSCGGGCSS------------------CCSHHHHHHHHHHCB---C-CEECCCTTTTHHH
T ss_pred             hHHhcCCCCCCCCcccCCCCCCcchhhhc------------------cCCHHHHHHHHHhCc---c-ccCcccccCCCHH
Confidence            6999999997654333 799998 21111                  136889999999863   2 3587 54567799


Q ss_pred             HHHHHHHHHhhccC
Q psy8407          79 ERGDLIAYLEQASK   92 (92)
Q Consensus        79 d~~~liayL~sl~~   92 (92)
                      |+++|++||.+++.
T Consensus       290 ei~~laaYl~sl~~  303 (311)
T 3mk7_C          290 KVHLLAAYVYSLSQ  303 (311)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999999999863

>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4

Probab=99.17  E-value=2.4e-12  Score=82.10  Aligned_cols=64  Identities=23%  Similarity=0.276  Sum_probs=43.2

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC-CCCCCCCC-CCCCCCHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK-YIPGTKMI-FAGIKKPQE   79 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~-~~p~~~Mp-~~~~~~~~d   79 (92)
                      +|++||+.++.+ ...+|+|.+.                        ..++|..+|.+... ..++..|| |...++++|
T Consensus       118 ~C~~CHg~~g~g-~~~~P~L~~~------------------------~~~~~~~~l~~~~~g~~~~~~Mp~~~~~Ls~~e  172 (183)
T 1h1o_A          118 ACMECHGSDGQG-AGPFPRLAGQ------------------------RYGYIIQQLTYFHNGTRVNTLMNQIAKNITVAQ  172 (183)
T ss_dssp             CTHHHHCTTSCC-BTTBCCCTTC------------------------CHHHHHHHHHHHHHTSSCCHHHHHHHTTCCHHH
T ss_pred             cchhhCCCCCCC-CCCCCCCCCC------------------------CHHHHHHHHHHHHcCCCCCcchHHHHHhCCHHH
Confidence            799999998765 5567888863                        13344444443221 12235687 544567999


Q ss_pred             HHHHHHHHhhc
Q psy8407          80 RGDLIAYLEQA   90 (92)
Q Consensus        80 ~~~liayL~sl   90 (92)
                      +++|++||++|
T Consensus       173 i~~l~~yl~sl  183 (183)
T 1h1o_A          173 MKDVAAYLSSL  183 (183)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999986

>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}

Probab=99.13  E-value=3.4e-11  Score=68.70  Aligned_cols=38  Identities=16%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             cH-HHHHHHHhCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHhhcc
Q psy8407          49 NK-DTLFEYLENPKKYIPGTKMI-FAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        49 ~~-~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~~~liayL~sl~   91 (92)
                      +. +.|..+|+++.     +.|| |...++++|+++|++||.++.
T Consensus        49 ~~~~~~~~~i~~g~-----~~Mp~~~~~ls~~ei~~l~~yl~~l~   88 (93)
T 3dr0_A           49 SLEEAVAYQVTNGQ-----GAMPAFGGRLSDADIANVAAYIADQA   88 (93)
T ss_dssp             CHHHHHHHHHHHCB-----TTBCCCBTTBCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            45 88999999875     4577 445667999999999999874

>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*

Probab=99.12  E-value=2.5e-11  Score=68.63  Aligned_cols=66  Identities=17%  Similarity=0.248  Sum_probs=41.7

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCC--CCCHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAG--IKKPQ   78 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~--~~~~~   78 (92)
                      +|++||..++.+    +|.|..+...          .+.+.     -+.++|...|++..     ..|| |..  .++++
T Consensus        13 ~Ca~CHg~~~~g----~p~~~~~~~~----------~~~l~-----~~~~~l~~~i~~G~-----~~Mp~~~~~~~Lsd~   68 (81)
T 1kx2_A           13 ACTVCHSMGVAG----APKSHNTADW----------EPRLA-----KGVDNLVKSVKTGL-----NAMPPGGMCTDCTDE   68 (81)
T ss_dssp             STTSSTTTTGGG----CCCTTCSTTT----------HHHHT-----TCSTTHHHHHHHTC-----TTSCGGGGCSSCCHH
T ss_pred             HHHHHcCCCCCC----CCCCCChhhh----------hhhhh-----cCHHHHHHHHHhCc-----CCCCCCCCCCCCCHH
Confidence            799999976432    4776654211          01110     13456777777654     2587 422  46799


Q ss_pred             HHHHHHHHHhhcc
Q psy8407          79 ERGDLIAYLEQAS   91 (92)
Q Consensus        79 d~~~liayL~sl~   91 (92)
                      |+++|++||.+++
T Consensus        69 ei~~l~~Yi~~~~   81 (81)
T 1kx2_A           69 DYKAAIEFMSKAK   81 (81)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999875

>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*

Probab=99.11  E-value=1.4e-11  Score=78.87  Aligned_cols=67  Identities=22%  Similarity=0.334  Sum_probs=46.2

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCC-CCCCCCCCC-CCCCCCHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK-KYIPGTKMI-FAGIKKPQ   78 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~-~~~p~~~Mp-~~~~~~~~   78 (92)
                      ++|++||..++.+.....|+|.|.                        ++++|.+.|++-. +..+...|+ +...++++
T Consensus         9 ~~C~~CHg~~G~~~~~~~P~LaG~------------------------~~~~i~~~l~~~~~g~~~~~~M~~~~~~Ls~~   64 (174)
T 3vrd_A            9 NNCAGCHGTRGNSAGPASPSIAQM------------------------DPAVFVEVMEQFKSGEIQSTIMGRIAKGYSTA   64 (174)
T ss_dssp             GGGHHHHCGGGCCCCSSSCCCTTC------------------------CHHHHHHHHHHHHHTSSCCSSHHHHHTTSCHH
T ss_pred             hhHHHhCCCcCCCCCCCCCCcCCC------------------------CHHHHHHHHHHhhcCCccccccchhhccCCHH
Confidence            479999999876555567888652                        4666666665421 223445675 44456799


Q ss_pred             HHHHHHHHHhhcc
Q psy8407          79 ERGDLIAYLEQAS   91 (92)
Q Consensus        79 d~~~liayL~sl~   91 (92)
                      |+++|++||.++.
T Consensus        65 di~~la~Y~~s~~   77 (174)
T 3vrd_A           65 DFQKMAEYFKQQT   77 (174)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHhhhhccc
Confidence            9999999999874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.04  E-value=4.9e-11  Score=89.52  Aligned_cols=65  Identities=26%  Similarity=0.357  Sum_probs=51.0

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.+ +..+|+|.+...                     ++.+.|..+|+++...   +.|| |...++++||
T Consensus       605 ~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~---~~Mp~~~~~ls~~ei  659 (689)
T 1yiq_A          605 YCSQCHGIHAVS-GGVLPDLRKLTP---------------------EKHQMFLGILFGGRVP---DGMPSFADAFTPEQV  659 (689)
T ss_dssp             HTHHHHCGGGCC-CSSSCCTTSCCH---------------------HHHHTHHHHHTTTTGG---GTCCCCTTTCCHHHH
T ss_pred             hhhhhCCCCCcC-CCCCCCcccCCc---------------------CCHHHHHHHHHcCCCC---CCCCccccCCCHHHH
Confidence            699999999765 578899987421                     3678899999987532   4687 5566779999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||+++.
T Consensus       660 ~~l~~Yl~~~~  670 (689)
T 1yiq_A          660 DQIHQYLIKRA  670 (689)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999999874

>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*

Probab=99.04  E-value=1.1e-10  Score=74.80  Aligned_cols=71  Identities=17%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC------CCCCCCCC-CCC
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK------YIPGTKMI-FAG   73 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~------~~p~~~Mp-~~~   73 (92)
                      ++|++||+.++.+....+|+|.+..                    ..|..+.|..++.....      ..+.+.|| +..
T Consensus        12 ~~C~~CHg~~g~g~~~~~P~L~~~~--------------------~~~~~~~l~~~~~G~~~~~~~~~~~~~~~Mp~~~~   71 (190)
T 1m70_A           12 AVCGACHGVDGNSPAPNFPKLAGQG--------------------ERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGMLD   71 (190)
T ss_dssp             GGGHHHHCTTSCCCCTTSCCCTTCC--------------------HHHHHHHHHHHHHHHSTTCCTTSSCCCGGGTTTTT
T ss_pred             hHHHhhcCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCccccccccCCCCcchHHHHH
Confidence            3799999999765445689998741                    13456666555432210      13356787 445


Q ss_pred             CCCHHHHHHHHHHHhhcc
Q psy8407          74 IKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        74 ~~~~~d~~~liayL~sl~   91 (92)
                      .++++|+.+|++||.++.
T Consensus        72 ~ls~~e~~~l~~yl~~~~   89 (190)
T 1m70_A           72 PLSDQDLEDIAAYFSSQK   89 (190)
T ss_dssp             TCCHHHHHHHHHHHHHSC
T ss_pred             HCCHHHHHHHHHHHHhCC
Confidence            567999999999999864

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=4.2e-11  Score=89.53  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=50.6

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.+ +..+|+|.+...                     ++.+.|..+|++.....  ..|| |...++++||
T Consensus       590 ~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~~--~~Mp~~~~~ls~~ei  645 (668)
T 1kv9_A          590 FCSVCHGMGTIS-GGLIPDLRQSSD---------------------ATREHFQQIVLQGALKP--LGMPSFDDSLKPEEV  645 (668)
T ss_dssp             HTHHHHCGGGCC-CSSSCCGGGCCH---------------------HHHHTHHHHHHHCTTGG--GTCCCCTTTCCHHHH
T ss_pred             hhHhhCcCCCcC-CCCCCCCcCCCC---------------------CCHHHHHHHHHhCCCCC--CCCCccccCCCHHHH
Confidence            699999999765 678899987421                     25778888888865322  2387 6666779999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||+++.
T Consensus       646 ~~l~~yl~~~~  656 (668)
T 1kv9_A          646 EQIKLYVMSRE  656 (668)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999999874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.02  E-value=4.6e-11  Score=87.35  Aligned_cols=64  Identities=17%  Similarity=0.318  Sum_probs=48.1

Q ss_pred             CCccCccccCCCCCCCCCCcc-CccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC--CCCCH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLH-GLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA--GIKKP   77 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~-~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~--~~~~~   77 (92)
                      +|++||..++.  +..||+|. ++..+                    .++++|..+|+++.   ++ .|| |.  ..+++
T Consensus        46 ~Ca~CHg~~g~--g~~~p~l~~~~~~~--------------------~~~~~l~~~i~~G~---~~-~Mp~~~~~~~ls~   99 (543)
T 1nir_A           46 RCAGCHGVLRK--GATGKPLTPDITQQ--------------------RGQQYLEALITYGT---PL-GMPNWGSSGELSK   99 (543)
T ss_dssp             HTHHHHTTTTC--CSSSSCCSHHHHHH--------------------HCHHHHHHHHHHCC---SS-SCCCSTTTTSSCH
T ss_pred             hhHhhCCCCCC--CCCCCCCcchhccc--------------------CCHHHHHHHHHcCC---CC-CCCCcccccCCCH
Confidence            69999999864  45689996 22211                    25889999999863   34 687 43  56779


Q ss_pred             HHHHHHHHHHhhcc
Q psy8407          78 QERGDLIAYLEQAS   91 (92)
Q Consensus        78 ~d~~~liayL~sl~   91 (92)
                      +|+++|++||++++
T Consensus       100 ~ei~~l~~yl~~~~  113 (543)
T 1nir_A          100 EQITLMAKYIQHTP  113 (543)
T ss_dssp             HHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999999875

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}

Probab=98.99  E-value=5.5e-11  Score=85.24  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=49.2

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCC------C-CCCCCCCCCC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKY------I-PGTKMIFAGI   74 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~------~-p~~~Mp~~~~   74 (92)
                      +|++||+.++.+....+|+|.+.  ..                 +..+.+++.++|+++...      . .+..||... 
T Consensus       349 ~Ca~CHg~~g~g~~~~~P~L~~~--~~-----------------~~~~~~~~~~~i~~G~~~~~~~~g~~~~~~MP~~~-  408 (442)
T 2zoo_A          349 NCMACHQANGEGIPGAFPPLAKS--DY-----------------LNNNPLLGVNAIIKGLSGPIKVNNVNYNGVMPAMN-  408 (442)
T ss_dssp             HTHHHHCTTSCCBTTTBCCCTTC--HH-----------------HHHCHHHHHHHHHHCEESCEEETTEEECCEECCCC-
T ss_pred             hhHHhCCCCCCCCCCCCCCCCCc--cc-----------------ccCCHHHHHHHHHcCccccccccCCccCCCCCCCC-
Confidence            59999999976544567999872  11                 011466788888876431      1 135798555 


Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      ++++|+++|++||+++.
T Consensus       409 Lsd~ei~~l~~Yl~~~~  425 (442)
T 2zoo_A          409 LNDEDIANVITFVLNNW  425 (442)
T ss_dssp             CCHHHHHHHHHHHHTST
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            67999999999999874

>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1

Probab=98.90  E-value=3.4e-10  Score=64.45  Aligned_cols=68  Identities=13%  Similarity=0.059  Sum_probs=39.1

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCC--CCCH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAG--IKKP   77 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~--~~~~   77 (92)
                      ++|++||..+..+    +|.|.....          +...+..   ..+.+.|...|.+..     ..|| |..  .+++
T Consensus        13 ~~Ca~CHg~~~~G----~p~~~~~~~----------~~~~l~~---~~~~~~l~~~i~~G~-----~~MP~~~~~~~Lsd   70 (83)
T 1cc5_A           13 KYCNACHGTGLLN----APKVGDSAA----------WKTRADA---KGGLDGLLAQSLSGL-----NAMPPKGTCADCSD   70 (83)
T ss_dssp             HTTHHHHTTTTTT----CCCTTCHHH----------HHHHHHH---HTSSTTTHHHHHHCB-----TTBCSSSSCSSCCH
T ss_pred             HHHHHHCcCCCCC----CCCCCCHHH----------HHHHhhc---ccCHHHHHHHHHcCc-----cCCCCCCCCCCCCH
Confidence            3799999987432    466544211          0000000   002344566666653     2487 544  4679


Q ss_pred             HHHHHHHHHHhhc
Q psy8407          78 QERGDLIAYLEQA   90 (92)
Q Consensus        78 ~d~~~liayL~sl   90 (92)
                      +|+++|++||.++
T Consensus        71 ~ei~~v~~yi~~~   83 (83)
T 1cc5_A           71 DELKAAIGKMSGL   83 (83)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999863

>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4

Probab=98.90  E-value=2e-10  Score=73.08  Aligned_cols=71  Identities=17%  Similarity=0.267  Sum_probs=44.3

Q ss_pred             CCCccCccccCCCCC-CCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCC-CCCCCC-CCCCCCH
Q psy8407           1 MKCAQCHTIEAGGAH-KVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYI-PGTKMI-FAGIKKP   77 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~-~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~-p~~~Mp-~~~~~~~   77 (92)
                      .+|++||..++.+.. ..+|+|.+..                    ..|..+.|..++....... ....|| +...+++
T Consensus        14 ~~Ca~CHg~~g~g~~~~~~P~L~~~~--------------------~~~~~~~l~~~~~g~r~~~~~~~~Mp~~~~~ls~   73 (183)
T 1h1o_A           14 SDCMVCHGMTGRDTLYPIVPRLAGQH--------------------KSYMEAQLKAYKDHSRADQNGEIYMWPVAQALDS   73 (183)
T ss_dssp             GGTHHHHCBTTBCCSSTTSCCCTTCC--------------------HHHHHHHHHHHHTTCCCCHHHHHHTHHHHHTCCH
T ss_pred             hHHHHhcCCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCCCCCCcchHHHHHHHhCCH
Confidence            379999999975433 4578887641                    1234455555443221100 024687 4344669


Q ss_pred             HHHHHHHHHHhhcc
Q psy8407          78 QERGDLIAYLEQAS   91 (92)
Q Consensus        78 ~d~~~liayL~sl~   91 (92)
                      +|+.+|++||.++.
T Consensus        74 ~e~~al~~yl~~~~   87 (183)
T 1h1o_A           74 AKITALADYFNAQK   87 (183)
T ss_dssp             HHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999999875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.87  E-value=6.8e-10  Score=82.04  Aligned_cols=65  Identities=20%  Similarity=0.315  Sum_probs=48.1

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC--CCCCHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA--GIKKPQ   78 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~--~~~~~~   78 (92)
                      +|++||+.++.  +..||+|..-.-                   ..+++++|..+|++..   ++ .|| |.  ..++++
T Consensus        64 ~Ca~CHg~~g~--G~~gp~L~~~~~-------------------~~~~~~~l~~~i~~G~---~~-~Mp~~~~~~~Lsd~  118 (567)
T 1qks_A           64 RCAGCHGVLRK--GATGKALTPDLT-------------------RDLGFDYLQSFITYAS---PA-GMPNWGTSGELSAE  118 (567)
T ss_dssp             HTHHHHCTTSS--CSSSCCCCHHHH-------------------HHHCHHHHHHHHTTCC---CC-CCTTTSCCCCCCHH
T ss_pred             hhHhhCCCCCC--CCCCCCCCchhh-------------------ccCCHHHHHHHHHhCC---CC-CCCCccccCCCCHH
Confidence            69999999864  467899864100                   0125889999998763   34 688 53  567799


Q ss_pred             HHHHHHHHHhhcc
Q psy8407          79 ERGDLIAYLEQAS   91 (92)
Q Consensus        79 d~~~liayL~sl~   91 (92)
                      |+++|++||+++.
T Consensus       119 ei~~l~~yi~~~~  131 (567)
T 1qks_A          119 QVDLMANYLLLDP  131 (567)
T ss_dssp             HHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999999875

>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}

Probab=98.86  E-value=2.1e-09  Score=70.73  Aligned_cols=74  Identities=26%  Similarity=0.311  Sum_probs=45.1

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHH-HHHHHHhCCCCCCCCCCCC--CCCCCCHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKD-TLFEYLENPKKYIPGTKMI--FAGIKKPQ   78 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~-~l~~~i~~P~~~~p~~~Mp--~~~~~~~~   78 (92)
                      +|++||+.++.+ ...+|+|.+..+..... ..      .+..+..|... .|..+++        ..||  |...++++
T Consensus        45 ~Ca~CHG~~G~G-~~~~P~L~g~~~~l~~~-~~------~~~~g~~~~~~~~l~~~~~--------~~MP~~~~~~Lsde  108 (205)
T 2xts_B           45 NCASCHGDFAEG-LDSWPVLAGGDGSLTDP-RP------VKTIGSYWPYLSTVYDYVH--------RSMPFGSAQTLSVD  108 (205)
T ss_dssp             HTHHHHCTTSSC-STTSCCCSCCTTCTTSS-SC------CCCTTTTCCCHHHHHHHHH--------HHCSTTSCSCCCHH
T ss_pred             hhHHhCCCCCCC-CCCCCCccCCccccccc-ch------hhhhccccchhHHHhccCc--------CCCCcccccCCCHH
Confidence            699999999754 34579998854322110 00      01123345433 3444443        2376  44567799


Q ss_pred             HHHHHHHHHhhcc
Q psy8407          79 ERGDLIAYLEQAS   91 (92)
Q Consensus        79 d~~~liayL~sl~   91 (92)
                      ||.+|++||+++.
T Consensus       109 Ei~aL~aYl~sl~  121 (205)
T 2xts_B          109 DTYAITAFLLYSN  121 (205)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999875

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=98.83  E-value=9.1e-10  Score=76.19  Aligned_cols=67  Identities=18%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.+. ..+|+|.+...+..                  .+.++|..+|+++.   + ..|| |...++++|+
T Consensus       142 ~Ca~CHg~~g~g~-~g~P~L~~~~~~~g------------------~~~~~l~~~i~~G~---~-~~Mp~~~~~Ls~~ei  198 (311)
T 3mk7_C          142 YCSICHGSDAKGS-LGFPNLADQDWRWG------------------GDAASIKTSILNGR---I-AAMPAWGQAIGEEGV  198 (311)
T ss_dssp             HTHHHHCTTSCCB-TTBCCSSSSCCSSC------------------CSHHHHHHHHHHCE---E-CCBCCCHHHHCHHHH
T ss_pred             hHHHhCCCCCCCC-CCCCCCCCcccccC------------------CCHHHHHHHHHhCC---c-CCCccccccCCHHHH
Confidence            6999999987542 22599997532211                  16889999999874   2 2577 4444569999


Q ss_pred             HHHHHHHhh-cc
Q psy8407          81 GDLIAYLEQ-AS   91 (92)
Q Consensus        81 ~~liayL~s-l~   91 (92)
                      ++|++||++ +.
T Consensus       199 ~~laaYl~s~l~  210 (311)
T 3mk7_C          199 KNVAAFVRKDLA  210 (311)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHhhcc
Confidence            999999998 64

>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*

Probab=98.76  E-value=9.8e-10  Score=70.25  Aligned_cols=70  Identities=11%  Similarity=0.180  Sum_probs=40.0

Q ss_pred             CCccCccccCCCCC--CCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC--CCCCC-CCCCCC
Q psy8407           2 KCAQCHTIEAGGAH--KVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP--GTKMI-FAGIKK   76 (92)
Q Consensus         2 ~C~~CH~~~~~~~~--~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p--~~~Mp-~~~~~~   76 (92)
                      +|++||..++.|..  ..-|.|.+...                    ......|..|........+  ...|| +...++
T Consensus       100 ~Ca~CHg~~G~G~~~~~~~P~L~gq~~--------------------~yl~~~L~~~~~g~r~~~~~~~~~M~~~a~~Ls  159 (174)
T 3vrd_A          100 YCEKCHVESGKPLADQDEYHILAGQWT--------------------PYLRYAIEDFRAERRPMEKKMASKLKELLKAEG  159 (174)
T ss_dssp             HTTTTSGGGGCCCTTCSSCCCCTTSCH--------------------HHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred             hhHhhcCcCCCCCCCCCCCCccCCCCH--------------------HHHHHHHHHHHcCCcCCCCccchhhHHHHhhCC
Confidence            59999999875422  22466654210                    0023344444332211111  12576 444566


Q ss_pred             HHHHHHHHHHHhhcc
Q psy8407          77 PQERGDLIAYLEQAS   91 (92)
Q Consensus        77 ~~d~~~liayL~sl~   91 (92)
                      |+||++|++||.|++
T Consensus       160 d~eI~alaaY~~S~k  174 (174)
T 3vrd_A          160 EDGLDALFAFYASQQ  174 (174)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999999985

>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}

Probab=98.24  E-value=4e-06  Score=58.55  Aligned_cols=39  Identities=15%  Similarity=0.284  Sum_probs=27.0

Q ss_pred             cCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          44 KGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        44 ~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      .|..++-+++.++....        +.... ++++|+++||+||++|+
T Consensus       265 dG~~~tL~evv~~y~~~--------~~~~~-Ls~~E~~~LvaFL~tLt  303 (328)
T 1zzh_A          265 SGKVWDLREAVSVMANS--------QLGAT-LDDTQVDQITAFLGTLT  303 (328)
T ss_dssp             TTCBCCHHHHHHHHHSS--------TTSCC-CCHHHHHHHHHHHGGGC
T ss_pred             CCccCCHHHHHHHhhcc--------ccCCC-CCHHHHHHHHHHHHHcC
Confidence            35566777777776532        11223 45999999999999986

>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*

Probab=98.19  E-value=4.9e-06  Score=58.04  Aligned_cols=39  Identities=13%  Similarity=0.342  Sum_probs=26.1

Q ss_pred             cCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          44 KGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        44 ~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      .|..++-+++.+|...       ..+ ... ++++|+++||+||+||+
T Consensus       262 dG~~~tL~evv~~~~~-------~~~-~~~-Ls~~e~~~LvAFL~sLt  300 (326)
T 1nml_A          262 SGAVWSLEEAVAVMGT-------AQL-GTE-LNNDEVKSIVAFLKTLT  300 (326)
T ss_dssp             TCCBCCHHHHHHHTCC-------TTT-TCC-CCHHHHHHHHHHHGGGC
T ss_pred             CCCcCCHHHHHHHhhh-------hcc-CCC-CCHHHHHHHHHHHHHcC
Confidence            3556777776666421       111 123 45999999999999986

>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}

Probab=98.18  E-value=1.5e-06  Score=60.68  Aligned_cols=39  Identities=13%  Similarity=0.347  Sum_probs=27.0

Q ss_pred             cCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          44 KGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        44 ~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      .|..|+-++...|...++       + .. .++++|+++|++||++|+
T Consensus       253 dG~~~tL~evv~~~~~~~-------~-~~-~Ls~~E~~~LvaFL~sLt  291 (320)
T 3o5c_A          253 DGSVWTLEEAVNTMADIQ-------L-GQ-KLTEKETKEMVAFLNSLT  291 (320)
T ss_dssp             TTCBCSHHHHHHHHHHHH-------H-SC-CCCHHHHHHHHHHHHTTC
T ss_pred             CCCcCcHHHHHHHhcccc-------c-cc-CCCHHHHHHHHHHHHHcC
Confidence            355677777777764321       1 12 345999999999999985

>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*

Probab=98.16  E-value=3.4e-06  Score=59.18  Aligned_cols=39  Identities=18%  Similarity=0.359  Sum_probs=25.8

Q ss_pred             cCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          44 KGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        44 ~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      .|..++-+++.+|...-        +.... ++++|+++||+||++|+
T Consensus       276 dG~~~tL~evv~~y~~~--------~~~~~-Ls~~E~~~LvaFL~sLt  314 (338)
T 2c1v_A          276 SGVVWELAEAVKIMSSA--------QIGTE-LTDQQAEDITAFLGTLT  314 (338)
T ss_dssp             TTCBCCHHHHHHHHHHH--------HTCCC-CCHHHHHHHHHHHHTTC
T ss_pred             CCccCCHHHHHHHHHhh--------cccCC-CCHHHHHHHHHHHHHcC
Confidence            35566666666665421        11123 45999999999999986

>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*

Probab=98.12  E-value=3.7e-06  Score=58.59  Aligned_cols=38  Identities=18%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             CccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          45 GITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        45 ~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      |..++-+++.++....        +.... ++++|+++||+||++|+
T Consensus       263 G~~~tL~evv~~y~~~--------~~~~~-Ls~~E~~~LvaFL~tLt  300 (323)
T 2vhd_A          263 GQVWELKDAVAIMGNA--------QLGKQ-LAPDDVENIVAFLHSLS  300 (323)
T ss_dssp             TCBCCHHHHHHHHHHH--------HHCCC-CCHHHHHHHHHHHHTTC
T ss_pred             CccCCHHHHHHHHhhc--------ccCCC-CCHHHHHHHHHHHHHcC
Confidence            4455666666554321        11123 45999999999999985

>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5

Probab=98.01  E-value=7.5e-06  Score=56.67  Aligned_cols=17  Identities=18%  Similarity=0.378  Sum_probs=15.4

Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      ++++|+++|++||++|+
T Consensus       267 Ls~~e~~~LvaFL~sLt  283 (308)
T 1iqc_A          267 FNKDEVSKIVAFLKTLT  283 (308)
T ss_dssp             CCHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            56999999999999985

>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...

Probab=97.91  E-value=4.1e-05  Score=51.46  Aligned_cols=42  Identities=26%  Similarity=0.370  Sum_probs=28.6

Q ss_pred             cHHHHHHHHh---CC-CC--C---------CCC--CCCCCCCC------------CCHHHHHHHHHHHhhc
Q psy8407          49 NKDTLFEYLE---NP-KK--Y---------IPG--TKMIFAGI------------KKPQERGDLIAYLEQA   90 (92)
Q Consensus        49 ~~~~l~~~i~---~P-~~--~---------~p~--~~Mp~~~~------------~~~~d~~~liayL~sl   90 (92)
                      ..++|..+|+   || .+  +         .|+  ..||....            ..+|.++||++||...
T Consensus       123 G~dyIyslL~Gy~dpp~G~~~~~G~~~N~~Fpg~~iaMP~~L~~~~v~y~dGtp~~~~q~a~Dvv~FL~w~  193 (241)
T 1pp9_D          123 GEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWA  193 (241)
T ss_dssp             HHHHHHHHHTCCCCCCTTCCCCTTCEECTTSTTSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCCCCCCccccCCcccccccCCCCcccccccccccceecCCCCccchHHHHHHHHHHHHHh
Confidence            4689999999   55 33  1         234  78984311            1189999999999865

>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*

Probab=97.91  E-value=4.1e-06  Score=57.25  Aligned_cols=71  Identities=20%  Similarity=0.249  Sum_probs=40.5

Q ss_pred             CCccCccccCCCCCCCC-----CCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC-CCCC-CCCCC
Q psy8407           2 KCAQCHTIEAGGAHKVG-----PNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP-GTKM-IFAGI   74 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~G-----P~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p-~~~M-p~~~~   74 (92)
                      +|++||...+.+ +..|     |.|..-.++..                  --++.|...+....+..+ ...| |+...
T Consensus        70 ~Ca~CHg~~G~g-~~~G~~a~yP~l~~~~g~v~------------------~L~~~I~~c~~~~~g~~~~~~~M~p~~~~  130 (275)
T 3oa8_A           70 SLETCDLGEGPG-KLEGAYAHLPRYFADTGKVM------------------DLEQRLLWCMETIQGRDTKPLVAKPFSGP  130 (275)
T ss_dssp             CSTTCBSSSSBT-CCTTTGGGCSEEETTTTEEE------------------CHHHHHHHHHHHTTCCCCHHHHHSCSCBT
T ss_pred             cccccCCccCCC-cccChhhhCcCccccCCCHH------------------HHHHHHHHHHHcccccccccccccccccc
Confidence            699999877532 2223     65554322211                  124456666554332211 1124 45445


Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      ++++|+++|++|+.+++
T Consensus       131 Ls~~di~~laaY~asls  147 (275)
T 3oa8_A          131 GRTSDMEDLVAFIANKS  147 (275)
T ss_dssp             TBCCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            56999999999999885

>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}

Probab=97.91  E-value=3.5e-06  Score=48.97  Aligned_cols=20  Identities=15%  Similarity=0.243  Sum_probs=15.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHhh
Q psy8407          69 MIFAGIKKPQERGDLIAYLEQ   89 (92)
Q Consensus        69 Mp~~~~~~~~d~~~liayL~s   89 (92)
                      ||-..+ +++|++.|++||..
T Consensus        71 mpg~~I-s~eda~~Iv~YLa~   90 (92)
T 3a9f_A           71 FPGSGI-SDDDAKTIGIWLHE   90 (92)
T ss_dssp             STTCCC-CHHHHHHHHHHHHH
T ss_pred             CCCCCC-CHHHHHHHHHHHHH
Confidence            554445 59999999999975

>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*

Probab=97.90  E-value=3.9e-05  Score=51.77  Aligned_cols=42  Identities=26%  Similarity=0.479  Sum_probs=28.0

Q ss_pred             cHHHHHHHHh----CCCC------------CCCCC--CCCCC---CC---------CCHHHHHHHHHHHhhc
Q psy8407          49 NKDTLFEYLE----NPKK------------YIPGT--KMIFA---GI---------KKPQERGDLIAYLEQA   90 (92)
Q Consensus        49 ~~~~l~~~i~----~P~~------------~~p~~--~Mp~~---~~---------~~~~d~~~liayL~sl   90 (92)
                      ..++|..+|+    +|..            +.||+  .||..   ++         ..+|.++||++||...
T Consensus       126 G~dyIyslL~Gy~~dpp~g~~~~~G~~yN~~fpg~~iaMP~~L~~~~v~~~dGtpa~~~q~a~Dvv~FL~w~  197 (248)
T 3cx5_D          126 GCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWC  197 (248)
T ss_dssp             HHHHHHHHHHCCCSSCCTTCCCCTTCEECTTSTTSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhccccCCccccccCCCccccccCCCCCcCCCccccccceecCCCCccchHHHHHHHHHHHHHH
Confidence            3678888665    4522            46787  89832   11         1368889999999865

>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*

Probab=97.89  E-value=2.3e-05  Score=55.16  Aligned_cols=38  Identities=16%  Similarity=0.354  Sum_probs=24.8

Q ss_pred             CccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          45 GITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        45 ~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      |..++-++...+...++         +...++++|+++|++||++|+
T Consensus       285 G~~~tL~~~v~~~~~~~---------~~~~Ls~~E~~~LvaFL~sLt  322 (345)
T 3hq9_A          285 GVVWSLKEAVAVMGSAQ---------FGIKLSDDESEAIAAFLGSLT  322 (345)
T ss_dssp             TCBCCHHHHHHHHSCGG---------GTCCCCHHHHHHHHHHHHTTC
T ss_pred             CccccHHHHHHHccccc---------cccCCCHHHHHHHHHHHHHhC
Confidence            44555666555553221         122356999999999999986

>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*

Probab=97.88  E-value=7.6e-06  Score=49.86  Aligned_cols=18  Identities=39%  Similarity=0.671  Sum_probs=16.0

Q ss_pred             CCHHHHHHHHHHHhhccC
Q psy8407          75 KKPQERGDLIAYLEQASK   92 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~~   92 (92)
                      .+++|..||++||.++++
T Consensus       104 cTa~EK~D~~ayL~s~~~  121 (124)
T 1e8e_A          104 CSPSEKANFIAYLLTETK  121 (124)
T ss_dssp             CCHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHcCC
Confidence            459999999999999875

>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*

Probab=97.86  E-value=4.9e-06  Score=46.94  Aligned_cols=16  Identities=13%  Similarity=0.235  Sum_probs=14.0

Q ss_pred             CCCHHHHHHHHHHHhh
Q psy8407          74 IKKPQERGDLIAYLEQ   89 (92)
Q Consensus        74 ~~~~~d~~~liayL~s   89 (92)
                      .++++|+++|++||.+
T Consensus        64 ~ls~~e~~~I~~YL~~   79 (81)
T 2blf_B           64 PVDEADAKAIADYLAK   79 (81)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            4569999999999976

>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*

Probab=97.72  E-value=4.2e-05  Score=53.76  Aligned_cols=39  Identities=8%  Similarity=0.273  Sum_probs=26.1

Q ss_pred             cCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          44 KGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        44 ~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      .|..++=+++.++....+.       + .. ++++|+++|||||+||+
T Consensus       279 dG~~~tLeevv~~y~~~~~-------~-~~-Lt~~E~~~LvAFL~tLt  317 (341)
T 4aan_A          279 SGKVWKLKDAVKIMGSAQL-------G-IS-ITDADADKIVTFLNTLT  317 (341)
T ss_dssp             TCCBCCHHHHHHHHHHHHH-------S-CC-CCHHHHHHHHHHHHTTC
T ss_pred             CCCcCCHHHHHHHHhccCc-------C-CC-CCHHHHHHHHHHHHccC
Confidence            4566676666666543210       1 23 45999999999999986

>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}

Probab=97.67  E-value=6.8e-05  Score=50.95  Aligned_cols=14  Identities=29%  Similarity=0.273  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHhhc
Q psy8407          77 PQERGDLIAYLEQA   90 (92)
Q Consensus        77 ~~d~~~liayL~sl   90 (92)
                      ++.++||++||...
T Consensus       206 ~q~a~DVvaFL~wa  219 (263)
T 2yiu_B          206 DQMATDVAAFLMWT  219 (263)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh
Confidence            88999999999865

>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*

Probab=97.67  E-value=1.7e-05  Score=53.62  Aligned_cols=18  Identities=17%  Similarity=0.089  Sum_probs=15.7

Q ss_pred             CCHHHHHHHHHHHhhccC
Q psy8407          75 KKPQERGDLIAYLEQASK   92 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~~   92 (92)
                      ++++|+++|++||.+|++
T Consensus       233 Ls~~ei~aLaaYl~sL~~  250 (261)
T 1h32_A          233 VGSPEFVALELYVASRGN  250 (261)
T ss_dssp             TTCHHHHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHhcC
Confidence            458999999999999863

>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*

Probab=97.64  E-value=1.3e-05  Score=58.47  Aligned_cols=20  Identities=20%  Similarity=0.297  Sum_probs=16.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhc
Q psy8407          71 FAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        71 ~~~~~~~~d~~~liayL~sl   90 (92)
                      |...++++|+++|++||.++
T Consensus        48 ~Ga~LSdEEI~aVAaYLasl   67 (494)
T 1jmx_A           48 HGLQISDDDRRTLVKYLADK   67 (494)
T ss_dssp             HCCCCCHHHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHh
Confidence            44556799999999999876

>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*

Probab=97.61  E-value=0.0003  Score=50.00  Aligned_cols=17  Identities=24%  Similarity=0.343  Sum_probs=15.5

Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      ++++|+++|||||+||+
T Consensus       334 Lt~~E~~dLVAFLkTLT  350 (373)
T 3sjl_A          334 LDDGRVDALVAFLETLT  350 (373)
T ss_dssp             CCHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            46999999999999986

>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}

Probab=97.32  E-value=0.0001  Score=49.89  Aligned_cols=23  Identities=9%  Similarity=-0.061  Sum_probs=17.6

Q ss_pred             CCC-CCCCCHHHHHHHHHHHhhcc
Q psy8407          69 MIF-AGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        69 Mp~-~~~~~~~d~~~liayL~sl~   91 (92)
                      |+. ...++++|+.+|++||.+|.
T Consensus       229 M~~~~~~Ls~~ei~aLaaYv~sL~  252 (264)
T 2c1d_A          229 TRAETFKAGSDDFKALELYVASRG  252 (264)
T ss_dssp             TTBCCCCTTCHHHHHHHHHHHHHT
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHcc
Confidence            553 23356999999999999985

>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*

Probab=97.30  E-value=0.00014  Score=52.89  Aligned_cols=15  Identities=27%  Similarity=0.558  Sum_probs=12.8

Q ss_pred             CCHHHHHHHHHHHhh
Q psy8407          75 KKPQERGDLIAYLEQ   89 (92)
Q Consensus        75 ~~~~d~~~liayL~s   89 (92)
                      ++++|++.|++||..
T Consensus        51 ISdEE~~aIaaYLAa   65 (489)
T 1pby_A           51 LEPEERAAIVRHLSD   65 (489)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            459999999999954

>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*

Probab=97.05  E-value=0.00017  Score=43.21  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=22.9

Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407          49 NKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl   90 (92)
                      +.+.+.+|++.--..+      +..--+.+|-.|+++||.++
T Consensus        77 D~akvekwf~rnc~~v------~gr~cta~EK~d~l~~l~~~  112 (112)
T 1dw0_A           77 DSARVEKWLGRNCNSV------IGRDCTPGEKADLLAWLAAQ  112 (112)
T ss_dssp             CHHHHHHHHHHHHHHH------HSSCCCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhhhhHH------HcccCCHHHHHHHHHHHHhC
Confidence            5667777776321111      11234599999999999874

>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*

Probab=96.76  E-value=0.00048  Score=46.98  Aligned_cols=18  Identities=17%  Similarity=0.163  Sum_probs=15.4

Q ss_pred             CCCHHHHHHHHHHHhhcc
Q psy8407          74 IKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        74 ~~~~~d~~~liayL~sl~   91 (92)
                      .++++|+.+|.+||.++.
T Consensus       246 ~l~~~ei~ALa~Yl~~ls  263 (275)
T 3oa8_A          246 DYASEAVTALTLYLTKQA  263 (275)
T ss_dssp             CTTCHHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHhC
Confidence            345899999999999875

>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*

Probab=96.73  E-value=0.0013  Score=44.86  Aligned_cols=14  Identities=29%  Similarity=0.221  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHhhc
Q psy8407          77 PQERGDLIAYLEQA   90 (92)
Q Consensus        77 ~~d~~~liayL~sl   90 (92)
                      +|.++||++||...
T Consensus       205 ~q~a~DVvaFL~wa  218 (269)
T 2qjy_B          205 HAMAEDVSAFLMWA  218 (269)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            78899999999754

>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}

Probab=96.62  E-value=0.0087  Score=40.54  Aligned_cols=14  Identities=36%  Similarity=0.295  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHhhc
Q psy8407          77 PQERGDLIAYLEQA   90 (92)
Q Consensus        77 ~~d~~~liayL~sl   90 (92)
                      +|.++||++||...
T Consensus       203 ~q~a~DVv~FL~wa  216 (258)
T 1zrt_D          203 DQMAQDVSAFLMWA  216 (258)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            58899999999754

>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}

Probab=96.48  E-value=0.00088  Score=45.22  Aligned_cols=17  Identities=12%  Similarity=0.249  Sum_probs=14.7

Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      ++++|+++|++|+.+++
T Consensus       129 l~~~~~~alaaY~~sls  145 (264)
T 2c1d_A          129 VTSDNMKDMLSLISLQS  145 (264)
T ss_dssp             TTSHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHHh
Confidence            34799999999999985

>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*

Probab=95.67  E-value=0.0022  Score=43.15  Aligned_cols=17  Identities=12%  Similarity=0.143  Sum_probs=14.8

Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      ++++|+++|++|+.+++
T Consensus       126 l~~~~i~alaaY~~sls  142 (261)
T 1h32_A          126 YIGPDMTAMVALIASVS  142 (261)
T ss_dssp             TTSHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence            45899999999999985

>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5

Probab=95.62  E-value=0.025  Score=38.91  Aligned_cols=17  Identities=6%  Similarity=0.083  Sum_probs=14.5

Q ss_pred             CCCHHHHHHHHHHHhhc
Q psy8407          74 IKKPQERGDLIAYLEQA   90 (92)
Q Consensus        74 ~~~~~d~~~liayL~sl   90 (92)
                      +..++++++|.+|++++
T Consensus       133 ~~~~~~~~Aia~y~~tl  149 (308)
T 1iqc_A          133 VTIDRITTAIAQFEETL  149 (308)
T ss_dssp             CCHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhhh
Confidence            44588999999999987

>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}

Probab=95.42  E-value=0.019  Score=39.92  Aligned_cols=18  Identities=11%  Similarity=-0.138  Sum_probs=14.5

Q ss_pred             CCCHHHHHHHHHHHhhcc
Q psy8407          74 IKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        74 ~~~~~d~~~liayL~sl~   91 (92)
                      +..++++++|.+|++++.
T Consensus       150 i~~~~~~~Aiaay~~sl~  167 (328)
T 1zzh_A          150 ISFDNFALAVEAFEATLI  167 (328)
T ss_dssp             CCHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHcC
Confidence            444788999999999873

>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*

Probab=95.28  E-value=0.034  Score=38.87  Aligned_cols=18  Identities=0%  Similarity=-0.093  Sum_probs=14.4

Q ss_pred             CCCHHHHHHHHHHHhhcc
Q psy8407          74 IKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        74 ~~~~~d~~~liayL~sl~   91 (92)
                      +..++++++|.+|++++.
T Consensus       161 it~~~~~~Aia~y~~sL~  178 (338)
T 2c1v_A          161 VTFDNFAAAIEQFEATLI  178 (338)
T ss_dssp             SCHHHHHHHHHHHHHTCC
T ss_pred             cCHHHHHHHHHHHHHHhc
Confidence            343788999999999874

>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*

Probab=95.01  E-value=0.033  Score=38.60  Aligned_cols=18  Identities=11%  Similarity=-0.036  Sum_probs=13.8

Q ss_pred             CCCHHHHHHHHHHHhhcc
Q psy8407          74 IKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        74 ~~~~~d~~~liayL~sl~   91 (92)
                      +..++++.+|.+|++++.
T Consensus       147 it~~~~~~Aia~y~~sl~  164 (323)
T 2vhd_A          147 VSFDNMALAIEAYEATLV  164 (323)
T ss_dssp             SSHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHhhcC
Confidence            343666899999999874

>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}

Probab=92.94  E-value=0.21  Score=34.64  Aligned_cols=15  Identities=7%  Similarity=0.080  Sum_probs=11.6

Q ss_pred             CHHHH-HHHHHHHhhc
Q psy8407          76 KPQER-GDLIAYLEQA   90 (92)
Q Consensus        76 ~~~d~-~~liayL~sl   90 (92)
                      +.+++ ++|.+|+++|
T Consensus       142 t~~~i~~Aiaaf~rtL  157 (320)
T 3o5c_A          142 DIDRLTDAIAAFEKTL  157 (320)
T ss_dssp             CHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            35555 8999999987

>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}

Probab=88.74  E-value=0.64  Score=28.06  Aligned_cols=10  Identities=30%  Similarity=0.909  Sum_probs=8.3

Q ss_pred             CCccCccccC
Q psy8407           2 KCAQCHTIEA   11 (92)
Q Consensus         2 ~C~~CH~~~~   11 (92)
                      +|++||..-.
T Consensus        12 ~C~~CH~a~p   21 (125)
T 2fwt_A           12 ECSACHMAYP   21 (125)
T ss_dssp             HTSSSSCCCC
T ss_pred             HHHhccCCCC
Confidence            6999998863

>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}

Probab=88.20  E-value=0.72  Score=28.37  Aligned_cols=15  Identities=27%  Similarity=0.508  Sum_probs=10.3

Q ss_pred             CHHHHHHHHHHHhhc
Q psy8407          76 KPQERGDLIAYLEQA   90 (92)
Q Consensus        76 ~~~d~~~liayL~sl   90 (92)
                      ++++...|.+||..-
T Consensus        59 d~~~~~~I~~YLq~~   73 (139)
T 2fw5_A           59 DEASRGQIESYLVAN   73 (139)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            477777777777653

>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}

Probab=82.88  E-value=0.37  Score=29.01  Aligned_cols=10  Identities=30%  Similarity=1.016  Sum_probs=8.0

Q ss_pred             CCCccCcccc
Q psy8407           1 MKCAQCHTIE   10 (92)
Q Consensus         1 ~~C~~CH~~~   10 (92)
                      .+|.+||..+
T Consensus       103 ~~C~~CH~~~  112 (134)
T 3b47_A          103 VRCQSCHEQG  112 (134)
T ss_dssp             TTGGGTSCTT
T ss_pred             CCchhhhCCC
Confidence            4799999773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	92
d1co6a_	107	a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas virid	9e-39
d1ycca_	108	a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's y	6e-37
d1ccra_	111	a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embr	5e-34
d1ql3a_	99	a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrifi	2e-33
d1jdla_	118	a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenu	3e-32
d1qn2a_	99	a.3.1.1 (A:) Cytochrome ch {Methylobacterium extor	2e-31
d1hroa_	105	a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis	1e-29
d1lfma_	103	a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin t	3e-27
d3c2ca_	112	a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum	5e-25
d1vyda_	116	a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus	1e-24
d1cota_	121	a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrifica	2e-22
d1cxca_	124	a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroide	6e-19
d1i8oa_	114	a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palus	8e-19
d1h32b_	138	a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rho	5e-06
d1ynra1	80	a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter	7e-05
d351ca_	82	a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aerugino	1e-04
d1f1ca_	129	a.3.1.1 (A:) Photosystem II associated cytochrome	0.004

>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]} Length = 107

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas viridis [TaxId: 1079]

 Score =  122 bits (308), Expect = 9e-39
 Identities = 46/91 (50%), Positives = 63/91 (69%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C  CH+I  G  +KVGP L+GL GR +G   GF+Y++AN   GITW ++   EY+ +PK
Sbjct: 12  QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPK 71

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
             IPGTKMIFAG+K  Q+  DLIAY++Q + 
Sbjct: 72  AKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 102

>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 108

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  118 bits (296), Expect = 6e-37
 Identities = 57/91 (62%), Positives = 74/91 (81%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           +C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18  RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
           KYIPGTKM F G+KK ++R DLI YL++A +
Sbjct: 78  KYIPGTKMAFGGLKKEKDRNDLITYLKKACE 108

>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]} Length = 111

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Rice embryos (Oryza sativa) [TaxId: 4530]

 Score =  110 bits (277), Expect = 5e-34
 Identities = 54/90 (60%), Positives = 73/90 (81%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT++ G  HK GPNL+GL GR++G  PG+SY+ A+    + W ++TL++YL NPK
Sbjct: 21  KCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPK 80

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKM+F G+KKPQER DLI+YL++A+
Sbjct: 81  KYIPGTKMVFPGLKKPQERADLISYLKEAT 110

>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]} Length = 99

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Paracoccus denitrificans [TaxId: 266]

 Score =  108 bits (272), Expect = 2e-33
 Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 2  KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
          KC  CH ++      VGP+L+G++GR      GF+Y++     G  W  + L E+L NPK
Sbjct: 12 KCKACHKLDGN--DGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPK 69

Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQ 89
            + GTKM FAG+ K ++R +LIAYLE 
Sbjct: 70 AVVKGTKMAFAGLPKIEDRANLIAYLEG 97

>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]} Length = 118

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum centenum [TaxId: 34018]

 Score =  106 bits (266), Expect = 3e-32
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 18/107 (16%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
           KC  CH +     + VGP L G+I R+ G APGF+Y+  N    + G+ W  + +  YL 
Sbjct: 12  KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLP 71

Query: 59  NPKKYIP--------------GTKMIFAGIKKPQERGDLIAYLEQAS 91
           +P  ++                TKM+F  +   QER D++AYL+Q S
Sbjct: 72  DPNAFLRKFLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQFS 117

>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]} Length = 99

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome ch
species: Methylobacterium extorquens [TaxId: 408]

 Score =  104 bits (260), Expect = 2e-31
 Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 4/88 (4%)

Query: 2  KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQ-APGFSYTEANIKKGITWNKDTLFEYLENP 60
           C  CH  E    + VGP L G++G K G+ A G+++++A  K G+TW++  L ++L +P
Sbjct: 13 PCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADP 69

Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLE 88
          KK +PGTKM+F GI  P++  D+IAYL+
Sbjct: 70 KKKVPGTKMVFPGISDPKKVDDIIAYLK 97

>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]} Length = 105

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopila globiformis [TaxId: 1071]

 Score = 99.4 bits (247), Expect = 1e-29
 Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 1/87 (1%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
            C  CHT   G  +KVGP+L+G++GR +G  PG++Y+EANIK GI W  D LF+Y+E+P+
Sbjct: 17  ICITCHTDIKGA-NKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQ 75

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLE 88
           K +PGTKM + G   PQ+R D+IAYLE
Sbjct: 76  KIVPGTKMGYPGQPDPQKRADIIAYLE 102

>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]} Length = 103

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Bluefin tuna (Thunnus thynnus) [TaxId: 8237]

 Score = 93.4 bits (231), Expect = 3e-27
 Identities = 70/90 (77%), Positives = 76/90 (84%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
           KCAQCHT+E GG HKVGPNL GL GRKTGQA G+SYT+AN  KGI WN DTL EYLENPK
Sbjct: 13  KCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPK 72

Query: 62  KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
           KYIPGTKMIFAGIKK  ER DL+AYL+ A+
Sbjct: 73  KYIPGTKMIFAGIKKKGERQDLVAYLKSAT 102

>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]} Length = 112

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum rubrum [TaxId: 1085]

 Score = 87.9 bits (217), Expect = 5e-25
 Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 12/98 (12%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIK---KGITWNKDTLFEYLE 58
           KC  CHT + GGA+KVGPNL G+          ++Y+E+  +   KG+TW +  L  Y++
Sbjct: 13  KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVK 72

Query: 59  NPKKYI--------PGTKMIFAGIKKPQERGDLIAYLE 88
           NPK ++          +KM F  + K  E  ++IAYL+
Sbjct: 73  NPKAFVLEKSGDPKAKSKMTF-KLTKDDEIENVIAYLK 109

>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]} Length = 116

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 87.5 bits (216), Expect = 1e-24
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 20/108 (18%)

Query: 2   KCAQCHTIEA------GGAHKVGPNLHGLIGRKTGQAPGFSYTE---ANIKKGITWNKDT 52
           KC  CH+I A          K GPNL+G++GR  G  P F Y +   A    G  W ++ 
Sbjct: 12  KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 71

Query: 53  LFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQASK 92
           +  Y+++P  ++          T+M F   K  +   D+ AYL    K
Sbjct: 72  IATYVKDPGAFLKEKLDDKKAKTEMAFKLAKGGE---DVAAYLASVVK 116

>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]} Length = 121

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Paracoccus denitrificans [TaxId: 266]

 Score = 81.8 bits (201), Expect = 2e-22
 Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 22/109 (20%)

Query: 2   KCAQCHTIEAGGA------HKVGPNLHGLIGRKTGQAPGFSYTEA-----NIKKGITWNK 50
           KC  CH I+A          K GPNL+G++GRK     GF Y E           +TW +
Sbjct: 13  KCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTE 72

Query: 51  DTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
             L EY+ +PK ++          TKM F   K  + + D++A+L Q S
Sbjct: 73  ADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLAQNS 118

>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]} Length = 124

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 73.0 bits (178), Expect = 6e-19
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 20/109 (18%)

Query: 2   KCAQCHTIEAGGA-------HKVGPNLHGLIGRKTGQAPGFSYTEANIKK----GITWNK 50
           +C  CH I             K GPNL+G++GR  G    F      +K+    G+ W++
Sbjct: 14  QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDE 73

Query: 51  DTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
           +   +Y+++P K++           KM F  +KK  +  ++ AYL+Q +
Sbjct: 74  EHFVQYVQDPTKFLKEYTGDAKAKGKMTF-KLKKEADAHNIWAYLQQVA 121

>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 114

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score = 72.2 bits (176), Expect = 8e-19
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 21/104 (20%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
           +C  CH       + VGP L G++GRK G A GF+Y+  N    + G+ W  D +  YL 
Sbjct: 12  QCMTCHRA---DKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLA 68

Query: 59  NPKKYIPG--------------TKMIFAGIKKPQERGDLIAYLE 88
           +P  ++                TKM F  +   Q+R D++AYL 
Sbjct: 69  DPNAFLKKFLTEKGKADQAVGVTKMTF-KLANEQQRKDVVAYLA 111

>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum sulfidophilum [TaxId: 35806]} Length = 138

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome SoxX
species: Rhodovulum sulfidophilum [TaxId: 35806]

 Score = 39.9 bits (92), Expect = 5e-06
 Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 47/113 (41%)

Query: 3   CAQCHTIEAGGAH----KVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE 58
           C  CH +           VGP+L G+  R                    + +  +   L 
Sbjct: 42  CIACHEVTEMADAQFPGTVGPSLDGVAAR--------------------YPEAMIRGILV 81

Query: 59  NPKKYIPGTK-----------------------MIFAGIKKPQERGDLIAYLE 88
           N K   P T                             +    +  D++AYL 
Sbjct: 82  NSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLM 134

>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]} Length = 80

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Hydrogenobacter thermophilus [TaxId: 940]

 Score = 35.6 bits (81), Expect = 7e-05
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 18/85 (21%)

Query: 3  CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
          C  CH ++A     VGP    +  +  G+                   D L   ++    
Sbjct: 10 CMACHDLKAKK---VGPAYADVAKKYAGR---------------KDAVDYLAGKIKKGGS 51

Query: 63 YIPGTKMIFAGIKKPQERGDLIAYL 87
           + G+  +        E   L  ++
Sbjct: 52 GVWGSVPMPPQNVTDAEAKQLAQWI 76

>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]} Length = 82

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.3 bits (80), Expect = 1e-04
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 18/85 (21%)

Query: 3  CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
          C  CH I+      VGP    +  +  GQA                 +  L + ++N  +
Sbjct: 12 CVACHAID---TKMVGPAYKDVAAKFAGQA---------------GAEAELAQRIKNGSQ 53

Query: 63 YIPGTKMIFAGIKKPQERGDLIAYL 87
           + G   +        E   L  ++
Sbjct: 54 GVWGPIPMPPNAVSDDEAQTLAKWV 78

>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]} Length = 129

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Arthrospira maxima [TaxId: 129910]

 Score = 31.9 bits (71), Expect = 0.004
 Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 4/92 (4%)

Query: 2   KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGIT-WNKDTLFEYLENP 60
            CAQCH   A G  +  P+++          P      A +         D   E  E  
Sbjct: 34  ACAQCH---ALGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNPTTYDGFVEISELH 90

Query: 61  KKYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
                             +  ++  Y+    K
Sbjct: 91  PSLKSSDIFPKMRNISEDDLYNVAGYILLQPK 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	92
d1co6a_	107	Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 10	100.0
d1ycca_	108	Mitochondrial cytochrome c {Baker's yeast (Sacchar	100.0
d1hroa_	105	Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]	100.0
d1ql3a_	99	Cytochrome c552 {Paracoccus denitrificans [TaxId:	100.0
d1qn2a_	99	Cytochrome ch {Methylobacterium extorquens [TaxId:	99.97
d1ccra_	111	Mitochondrial cytochrome c {Rice embryos (Oryza sa	99.97
d1jdla_	118	Cytochrome c2 {Rhodospirillum centenum [TaxId: 340	99.97
d1vyda_	116	Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061	99.95
d3c2ca_	112	Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]	99.94
d1i8oa_	114	Cytochrome c2 {Rhodopseudomonas palustris [TaxId:	99.94
d1lfma_	103	Mitochondrial cytochrome c {Bluefin tuna (Thunnus	99.94
d1cota_	121	Cytochrome c2 {Paracoccus denitrificans [TaxId: 26	99.92
d1cxca_	124	Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 106	99.9
d1h32b_	138	Mono-heme c-type cytochrome SoxX {Rhodovulum sulfi	99.81
d1ynra1	80	Cytochrome c552 {Hydrogenobacter thermophilus [Tax	99.78
d351ca_	82	Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 28	99.74
d1a56a_	81	Cytochrome c552 {Nitrosomonas europaea [TaxId: 915	99.72
d1cora_	82	Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]	99.69
d1c75a_	71	Cytochrome c6 (synonym: cytochrome c553) {Bacillus	99.65
d1c53a_	79	Cytochrome c6 (synonym: cytochrome c553) {Desulfov	99.49
d1wvec1	74	p-Cresol methylhydroxylase, cytochrome c subunit {	99.44
d1m70a1	92	Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}	99.41
d1fcdc1	80	Flavocytochrome c sulfide dehydrogenase, FCSD, cyt	99.41
d1cnoa_	86	Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]	99.4
d1c6sa_	87	Cytochrome c6 (synonym: cytochrome c553) {Cyanobac	99.36
d2gc4d1	147	Cytochrome c551 {Paracoccus denitrificans [TaxId:	99.36
d1kv9a1	104	Quinoprotein alcohol dehydrogenase, C-terminal dom	99.34
d1kb0a1	97	Quinoprotein alcohol dehydrogenase, C-terminal dom	99.34
d1nira1	112	N-terminal (heme c) domain of cytochrome cd1-nitri	99.33
d1c52a_	131	Cytochrome c552 {Thermus thermophilus [TaxId: 274]	99.32
d1mz4a_	131	Cytochrome c550 {Thermosynechococcus elongatus [Ta	99.31
d1h1oa1	82	Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9	99.28
d1kx7a_	81	Mono-heme c-type cytochrome ScyA {Shewanella putre	99.26
d1gksa_	78	Cytochrome c551 {Ectothiorhodospira halophila [Tax	99.26
d1e29a_	135	Photosystem II associated cytochrome c549 {Synecho	99.24
d1f1ca_	129	Photosystem II associated cytochrome c549 {Arthros	99.23
d1qksa1	127	N-terminal (heme c) domain of cytochrome cd1-nitri	99.22
d1fcdc2	94	Flavocytochrome c sulfide dehydrogenase, FCSD, cyt	99.21
d2c8sa1	149	Cytochrome c-L (MoxG) {Methylobacterium extorquens	99.15
d1f1fa_	88	Cytochrome c6 (synonym: cytochrome c553) {Arthrosp	99.15
d1ls9a_	91	Cytochrome c6 (synonym: cytochrome c553) {Green al	99.15
d1gdva_	85	Cytochrome c6 (synonym: cytochrome c553) {Red alga	99.11
d1cc5a_	83	Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]	99.11
d1ctja_	89	Cytochrome c6 (synonym: cytochrome c553) {Monoraph	99.1
d1cyja_	90	Cytochrome c6 (synonym: cytochrome c553) {Chlamydo	99.1
d1m70a2	98	Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}	99.0
d1h1oa2	90	Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9	98.97
d1nmla2	160	Di-heme cytochrome c peroxidase {Pseudomonas nauti	98.27
d1eb7a2	159	Di-heme cytochrome c peroxidase {Pseudomonas aerug	98.15
d1iqca2	158	Di-heme cytochrome c peroxidase {Nitrosomonas euro	97.98
d1pbya1	85	Quinohemoprotein amine dehydrogenase A chain, doma	97.13
d1jmxa1	84	Quinohemoprotein amine dehydrogenase A chain, doma	96.66
d1gu2a_	124	Cytochrome c'' {Methylophilus methylotrophus, stra	96.02
d1dw0a_	112	SHP, an oxygen binding cytochrome c {Rhodobacter s	95.28
d1h32a2	111	Di-heme cytochrome c SoxA {Rhodovulum sulfidophilu	95.04
d1iqca1	150	Di-heme cytochrome c peroxidase {Nitrosomonas euro	93.37
d1h32a1	150	Di-heme cytochrome c SoxA {Rhodovulum sulfidophilu	91.15
d1ppjd1	195	Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 99	88.03
d3cx5d1	199	Cytochrome bc1 domain {Baker's yeast (Saccharomyce	86.95

>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas viridis [TaxId: 1079]

Probab=100.00  E-value=4.6e-35  Score=175.47  Aligned_cols=90  Identities=51%  Similarity=0.988  Sum_probs=85.8

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|.+||+++.++...+||+|.+|++|..++.++|.|+.+++..+.+|++++|.+||.+|+.++|||.|||.++.+++|++
T Consensus        12 ~C~~CH~~~~~~~~~~GP~L~gi~gr~~g~~~~~~ys~al~~~~~~w~~~~L~~~l~~P~~~~pGt~M~~~gl~~~~d~~   91 (107)
T d1co6a_          12 QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMIFAGVKDEQKVS   91 (107)
T ss_dssp             HHHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSCCCCCCCCHHHHH
T ss_pred             hccccCccCCCCCCCccccccCccCcccccccccccCHHHhhccccCCHHHHHHHHhChHhhCCCCCCCCCCCCCHHHHH
Confidence            59999999876667899999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             HHHHHHhhcc
Q psy8407          82 DLIAYLEQAS   91 (92)
Q Consensus        82 ~liayL~sl~   91 (92)
                      +||+||++++
T Consensus        92 ~liAYL~~l~  101 (107)
T d1co6a_          92 DLIAYIKQFN  101 (107)
T ss_dssp             HHHHHHHTBC
T ss_pred             HHHHHHHHhc
Confidence            9999999985

>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-34  Score=172.73  Aligned_cols=91  Identities=63%  Similarity=1.204  Sum_probs=85.9

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|++||+++..+...+||+|.||++|..++.++|.|+.+++..+.+|+++.|.+||++|++++||+.|||.++.+++|++
T Consensus        18 ~C~~CH~i~~~~~~~~GP~L~gi~~r~~~~~~~~~ys~~l~~~~~~W~~~~L~~~l~~P~~~~pgt~M~~~gi~~~~d~~   97 (108)
T d1ycca_          18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRN   97 (108)
T ss_dssp             HTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCCCCCCCCCHHHHH
T ss_pred             hChhhCcCCCCCCcccccccCCcccCcccccCCcccCHHHhhccccCCHHHHHHHHHchhccCCCCCCCCCCCCCHHHHH
Confidence            69999999865566899999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             HHHHHHhhccC
Q psy8407          82 DLIAYLEQASK   92 (92)
Q Consensus        82 ~liayL~sl~~   92 (92)
                      +||+||+++++
T Consensus        98 ~liaYLks~s~  108 (108)
T d1ycca_          98 DLITYLKKACE  108 (108)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999875

>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopila globiformis [TaxId: 1071]

Probab=100.00  E-value=3.4e-34  Score=171.16  Aligned_cols=90  Identities=53%  Similarity=1.026  Sum_probs=84.8

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER   80 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~   80 (92)
                      ++|++||++.+. ...+||+|.+|++|..++.++|.|+.++...+..|+++.|.+||++|+.++||+.|||.++.+++|+
T Consensus        16 ~~C~~CH~~~~~-~~~~GP~L~gi~~R~~g~~~~~~ys~~l~~~~~~~~~~~L~~~l~~P~~~~pgt~M~~~gl~~~~~~   94 (105)
T d1hroa_          16 TICITCHTDIKG-ANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKR   94 (105)
T ss_dssp             TTGGGTCCSSTT-CBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCCCCCCCCCHHHH
T ss_pred             HhhHHhCCCCCC-CCccccccchhcccccccccCcccCHHHHhccccccHHHHHHHHHCccccCCCCCCCCCCCCCHHHH
Confidence            479999999853 5689999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      +|||+||+|||
T Consensus        95 ~dliaYL~sLK  105 (105)
T d1hroa_          95 ADIIAYLETLK  105 (105)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHHcC
Confidence            99999999996

>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=1.9e-33  Score=166.37  Aligned_cols=88  Identities=42%  Similarity=0.854  Sum_probs=83.4

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|.+||++++  ...+||+|.+|++|..+..++|.|+.+++..+..|+++.|.+||+||++++||+.|||.++.+++|++
T Consensus        12 ~C~~CHs~~~--~~~~GP~L~gi~gr~~~~~~~~~ys~~~~~~~~~w~~~~L~~~l~~P~~~~pgt~M~~~gl~~~~d~~   89 (99)
T d1ql3a_          12 KCKACHKLDG--NDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDRA   89 (99)
T ss_dssp             GTTTTCCSSS--CCSSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTCSCCCCCCCCHHHHH
T ss_pred             HHHhhCCcCC--CCCCCCCccCccCCcccccccccccHHHHhcccccCHHHHHHHHhChHhhCCCCCCCCCCCCCHHHHH
Confidence            5999999984  46899999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             HHHHHHhhcc
Q psy8407          82 DLIAYLEQAS   91 (92)
Q Consensus        82 ~liayL~sl~   91 (92)
                      +||+||+|++
T Consensus        90 dliaYLks~~   99 (99)
T d1ql3a_          90 NLIAYLEGQQ   99 (99)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHhhcC
Confidence            9999999974

>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome ch
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.97  E-value=1e-32  Score=163.22  Aligned_cols=86  Identities=44%  Similarity=0.956  Sum_probs=80.1

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCC-CCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQ-APGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQE   79 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~-~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d   79 (92)
                      ++|++||+++.   ..+||+|.||++|..++ .++|.|+.+++..++.|+++.|.+||++|+.++||+.|||.++.+++|
T Consensus        12 ~~C~~CH~i~~---~~~GP~L~gi~~r~~g~~~~~~~ys~~~~~~~~~w~~~~L~~~l~~P~~~~pgt~M~~~gl~~~~d   88 (99)
T d1qn2a_          12 APCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTKMVFPGISDPKK   88 (99)
T ss_dssp             GGGGGTCCSSS---CSSSCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCSCCCCCCCCHHH
T ss_pred             HhHHHHcCCcc---cCcCCccccccCCccccccCCccccHHHHhcCccccHHHHHHHHHCccccCCCCCCCCCCCCCHHH
Confidence            36999999973   47899999999999876 678999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHhh
Q psy8407          80 RGDLIAYLEQ   89 (92)
Q Consensus        80 ~~~liayL~s   89 (92)
                      +++||+||+|
T Consensus        89 ~~dliaYL~T   98 (99)
T d1qn2a_          89 VDDIIAYLKT   98 (99)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHcc
Confidence            9999999997

>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Rice embryos (Oryza sativa) [TaxId: 4530]

Probab=99.97  E-value=2.9e-32  Score=164.02  Aligned_cols=90  Identities=60%  Similarity=1.205  Sum_probs=85.0

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|++||+++..++..+||+|.+|++|.....++|.|+.++...+..|++++|.+||++|+.++|+++|||.++++++|++
T Consensus        21 ~CaaCH~i~~~~~~~~GP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~L~~~l~~P~~~~~g~~M~~~~~~~~~d~~  100 (111)
T d1ccra_          21 KCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERA  100 (111)
T ss_dssp             HTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHHHSTTCCCCCCCCCCHHHHH
T ss_pred             cCHhhCCcCCCCcchhHHHHHhhhcccccccccccccHHHHhccccCCHHHHHHHHHCccccCCCCCCCCCCCCCHHHHH
Confidence            69999999865567899999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             HHHHHHhhcc
Q psy8407          82 DLIAYLEQAS   91 (92)
Q Consensus        82 ~liayL~sl~   91 (92)
                      +||+||++++
T Consensus       101 dliaYLk~~t  110 (111)
T d1ccra_         101 DLISYLKEAT  110 (111)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999986

>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum centenum [TaxId: 34018]

Probab=99.97  E-value=3.1e-31  Score=161.02  Aligned_cols=90  Identities=40%  Similarity=0.849  Sum_probs=78.1

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHh---hhcCccccHHHHHHHHhCCCCCCC------------
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEAN---IKKGITWNKDTLFEYLENPKKYIP------------   65 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~---~~~~~~~~~~~l~~~i~~P~~~~p------------   65 (92)
                      ++|++||+++.++...+||+|.+|++|..++.++|.|+..+   .+.+++|++++|.+||+||+++++            
T Consensus        11 ~~C~~CH~v~~~~~~~iGP~L~gi~~R~~g~~~g~~Ys~~~~~~~~~g~~W~~e~L~~~l~~P~~~i~~~~~~~~~~~~~   90 (118)
T d1jdla_          11 KKCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRKFLADAGHAEQA   90 (118)
T ss_dssp             GGTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHHHHHHHTTCGGGG
T ss_pred             HHHHHhCCcCCCCCCCCCCcccCccCcccCccccccccHHHHHHHhcCccCCHHHHHHHHHCHHHhhccccccccccccC
Confidence            46999999986556789999999999999999999999755   468999999999999999987543            


Q ss_pred             --CCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          66 --GTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        66 --~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                        +++|+| ++.+++|+++||+||+||.
T Consensus        91 ~~~~~m~~-~l~~~~d~~dliaYL~sl~  117 (118)
T d1jdla_          91 KGSTKMVF-KLPDEQERKDVVAYLKQFS  117 (118)
T ss_dssp             SSCCSCCC-CCCCHHHHHHHHHHHGGGC
T ss_pred             CCCCcccc-cCCCHHHHHHHHHHHHHhC
Confidence              566766 6878999999999999985

>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.95  E-value=3.2e-29  Score=151.60  Aligned_cols=89  Identities=35%  Similarity=0.693  Sum_probs=76.7

Q ss_pred             CCCccCccccCC------CCCCCCCCccCccCCCCCCCCCCcchH---HhhhcCccccHHHHHHHHhCCCCCC-------
Q psy8407           1 MKCAQCHTIEAG------GAHKVGPNLHGLIGRKTGQAPGFSYTE---ANIKKGITWNKDTLFEYLENPKKYI-------   64 (92)
Q Consensus         1 ~~C~~CH~~~~~------~~~~~GP~L~~i~~r~~~~~~g~~y~~---~~~~~~~~~~~~~l~~~i~~P~~~~-------   64 (92)
                      ++|.+||+++..      +.+.+||+|.+|++|..++.++|.|+.   ++...+.+|+++.|.+||+||+.++       
T Consensus        11 ~~C~~CH~i~~~~~~~~~~~~~~GP~L~gi~~r~~~~~~~~~~s~~~~~~~~~~~~w~~~~L~~~l~~P~~~~~~~~~~~   90 (116)
T d1vyda_          11 NKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDK   90 (116)
T ss_dssp             GGTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHTCT
T ss_pred             HHhHHhCCCcCCcccccccccchhhhhcCccccchhhcccchhhhHHHHHHhcCccccHHHHHHHHHCHHHHhcccccCC
Confidence            369999999753      235799999999999999999999998   4567889999999999999998753       


Q ss_pred             -CCCCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407          65 -PGTKMIFAGIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        65 -p~~~Mp~~~~~~~~d~~~liayL~sl~~   92 (92)
                       |+|.|||.++   +|++||||||+||+|
T Consensus        91 ~p~t~M~~~g~---~d~~dliAYL~sL~k  116 (116)
T d1vyda_          91 KAKTEMAFKLA---KGGEDVAAYLASVVK  116 (116)
T ss_dssp             TCCCSCCCCCS---SCHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCC---CCHHHHHHHHHHhcC
Confidence             8999999876   356699999999987

>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.94  E-value=1.1e-27  Score=143.00  Aligned_cols=90  Identities=39%  Similarity=0.784  Sum_probs=79.1

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHh---hhcCccccHHHHHHHHhCCCCC--------CCCCCC
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEAN---IKKGITWNKDTLFEYLENPKKY--------IPGTKM   69 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~---~~~~~~~~~~~l~~~i~~P~~~--------~p~~~M   69 (92)
                      ++|++||+++..+...+||+|.++++|..++.++|.|+.++   ...+..|++++|.+||++|..+        .++++|
T Consensus        12 ~~C~~CH~~~~~~~~~~Gp~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~p~~~~~~~~~~~~~~~~m   91 (112)
T d3c2ca_          12 KKCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLEKSGDPKAKSKM   91 (112)
T ss_dssp             GGGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHCCTTCCCSC
T ss_pred             HHHHHhCCCcCCCCccccccccCCccccccccccccccHHHHHhhhccccCCHHHHHHHHHCcHHHhcccccCCCCCCCC
Confidence            36999999997666788999999999999999999988876   3568899999999999999875        467889


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc
Q psy8407          70 IFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        70 p~~~~~~~~d~~~liayL~sl~   91 (92)
                      |+. ++++|||+||||||+|||
T Consensus        92 ~~~-~ls~qdi~divAYL~tLK  112 (112)
T d3c2ca_          92 TFK-LTKDDEIENVIAYLKTLK  112 (112)
T ss_dssp             CCC-CCCHHHHHHHHHHHTTCC
T ss_pred             CCC-CCCHHHHHHHHHHHHhcC
Confidence            985 567999999999999997

>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris [TaxId: 1076]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=99.94  E-value=2.8e-28  Score=146.47  Aligned_cols=86  Identities=38%  Similarity=0.837  Sum_probs=74.4

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHh---hhcCccccHHHHHHHHhCCCCCCC-------------
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEAN---IKKGITWNKDTLFEYLENPKKYIP-------------   65 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~---~~~~~~~~~~~l~~~i~~P~~~~p-------------   65 (92)
                      +|++||+++.   ..+||+|.|+.+|..+..++|.|+...   ...+++|++++|.+||++|+.+++             
T Consensus        12 ~C~aCH~~~~---~~~GP~l~gi~~r~~~~~~~~~~~~~~~~~~~~~~~w~~~~L~~~i~~p~~~~~g~~~~~~~~~~~~   88 (114)
T d1i8oa_          12 QCMTCHRADK---NMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKKFLTEKGKADQAV   88 (114)
T ss_dssp             HHTTTCCSSS---CSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHHHTTCGGGCC
T ss_pred             HhHHhcCCCC---CCCCCCccCccccccccccchhhhhHHHHHhccCcccCHHHHHHHHhCcHhhccCcccchhhhhccc
Confidence            5999999873   468999999999999999999887755   456899999999999999987544             


Q ss_pred             -CCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          66 -GTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        66 -~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                       .++||| ++++++||+||||||+|||
T Consensus        89 ~~t~M~~-~~l~~~di~dliAYL~sLK  114 (114)
T d1i8oa_          89 GVTKMTF-KLANEQQRKDVVAYLATLK  114 (114)
T ss_dssp             SCCSSCC-CCCCHHHHHHHHHHHHTTC
T ss_pred             CCCcCCc-CCCCHHHHHHHHHHHHHcC
Confidence             478998 6677999999999999997

>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Bluefin tuna (Thunnus thynnus) [TaxId: 8237]

Probab=99.94  E-value=3.3e-27  Score=138.42  Aligned_cols=91  Identities=77%  Similarity=1.274  Sum_probs=84.2

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER   80 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~   80 (92)
                      ++|++||+++..+....||.|.++..|......++.++.++...+..|+++.|..|+++|....|+++||+.+++++|||
T Consensus        12 ~~C~~CH~~~~~~~~~~g~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~M~~~~~ls~~ei   91 (103)
T d1lfma_          12 QKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKMIFAGIKKKGER   91 (103)
T ss_dssp             HHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHCCCBCSHHHHHHHHHCHHHHSTTCSCCCCCCCSHHHH
T ss_pred             ccChhccCcccccCCCccccccccccccccccccccccHHHhhcCcccCHHHHHHHHhCcccccCCCCCCCCCCCCHHHH
Confidence            36999999987667889999999999988888888899999888999999999999999999999999999999899999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      +|||+||+|++
T Consensus        92 ~dviAYLkt~s  102 (103)
T d1lfma_          92 QDLVAYLKSAT  102 (103)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999999986

>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.8e-26  Score=140.03  Aligned_cols=88  Identities=40%  Similarity=0.790  Sum_probs=75.2

Q ss_pred             CCCccCccccCCC------CCCCCCCccCccCCCCCCCCCCcchHHhh-----hcCccccHHHHHHHHhCCCCCC-----
Q psy8407           1 MKCAQCHTIEAGG------AHKVGPNLHGLIGRKTGQAPGFSYTEANI-----KKGITWNKDTLFEYLENPKKYI-----   64 (92)
Q Consensus         1 ~~C~~CH~~~~~~------~~~~GP~L~~i~~r~~~~~~g~~y~~~~~-----~~~~~~~~~~l~~~i~~P~~~~-----   64 (92)
                      ++|++||+++..+      .+.+||+|.++++|..++.++|.|+..+.     ..+++|+++.|.+||+||+.++     
T Consensus        12 ~~C~~CH~~~~~~~~~~~~~~~~GP~L~gi~~r~~~~~~~~~~~~~~~~~~~~~~g~~w~~~~L~~~l~~P~~~i~~~~~   91 (121)
T d1cota_          12 NKCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEADLIEYVTDPKPWLVKMTD   91 (121)
T ss_dssp             GGTTTTCCEECTTSCEEECCCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHHHCHHHHHHHHHT
T ss_pred             HhCcccCccCCCCcccccccchhhHHhcCcccccccccccccchHHHHHHHhhccCCCCCHHHHHHHHHCcHHHhccccC
Confidence            4699999998642      35799999999999999999999988763     4689999999999999998753     


Q ss_pred             ---CCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          65 ---PGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        65 ---p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                         |++.|++.   +++|++|||+||+|++
T Consensus        92 ~~~~~t~M~~~---~~~d~~dliAYLks~~  118 (121)
T d1cota_          92 DKGAKTKMTFK---MGKNQADVVAFLAQNS  118 (121)
T ss_dssp             CTTCCCSCCCC---CCSCHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCC---CHHHHHHHHHHHHHcC
Confidence               77888863   4788999999999986

>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.90  E-value=2e-24  Score=130.78  Aligned_cols=90  Identities=33%  Similarity=0.712  Sum_probs=74.7

Q ss_pred             CCccCccccCC-------CCCCCCCCccCccCCCCCCCCCCcch-HHh---hhcCccccHHHHHHHHhCCCCCC------
Q psy8407           2 KCAQCHTIEAG-------GAHKVGPNLHGLIGRKTGQAPGFSYT-EAN---IKKGITWNKDTLFEYLENPKKYI------   64 (92)
Q Consensus         2 ~C~~CH~~~~~-------~~~~~GP~L~~i~~r~~~~~~g~~y~-~~~---~~~~~~~~~~~l~~~i~~P~~~~------   64 (92)
                      +|++||++++.       +...+||.|.+++++.....++|.+. ..+   ...+..|++++|..|+.+|..++      
T Consensus        14 ~Ca~CH~i~~~~~~~~~g~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~p~~~~~~~~~~   93 (124)
T d1cxca_          14 QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGD   93 (124)
T ss_dssp             GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHSC
T ss_pred             hhHhhCCccccCccccccccchhhhhhcccccccccccccchhhHHHHHHHhhccccCCHHHHHHHHhCcHhhhcccccc
Confidence            69999999863       23578999999999999999988843 333   34688999999999999997653      


Q ss_pred             --CCCCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407          65 --PGTKMIFAGIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        65 --p~~~Mp~~~~~~~~d~~~liayL~sl~~   92 (92)
                        ++++||+ ++++++||+||||||+||+.
T Consensus        94 ~~~~~~M~~-~~l~~~di~DLiAYL~sl~~  122 (124)
T d1cxca_          94 AKAKGKMTF-KLKKEADAHNIWAYLQQVAV  122 (124)
T ss_dssp             TTCCCSCCC-CCCCHHHHHHHHHHHHHHCC
T ss_pred             cCCCCCCCC-CCCCHHHHHHHHHHHHHcCC
Confidence              6789998 46679999999999999863

>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome SoxX
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=99.81  E-value=4e-21  Score=117.88  Aligned_cols=71  Identities=27%  Similarity=0.470  Sum_probs=55.4

Q ss_pred             CCccCccccCCC----CCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-------
Q psy8407           2 KCAQCHTIEAGG----AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-------   70 (92)
Q Consensus         2 ~C~~CH~~~~~~----~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-------   70 (92)
                      +|.+||++++.+    .+.+||+|.++.+|.                    ++++|..||.||....+++.||       
T Consensus        41 ~C~aCH~~~~~g~~~~~g~~gP~L~~ig~r~--------------------~~~~l~~~i~~p~~~~~~~~~~~~~~~~~  100 (138)
T d1h32b_          41 NCIACHEVTEMADAQFPGTVGPSLDGVAARY--------------------PEAMIRGILVNSKNVFPETVMPAYYRVEG  100 (138)
T ss_dssp             CGGGTCCCTTC---CCCCSSSCCCTTHHHHS--------------------CHHHHHHHHHCHHHHSTTCSSCCTTCCSC
T ss_pred             CcccCCCCCCcCcccccCCcCCccccccccC--------------------CHHHHHHHHhCHHhcCCCcccccceeccc
Confidence            599999998643    257899999987653                    7899999999987665554443       


Q ss_pred             ----------------CCCCCCHHHHHHHHHHHhhccC
Q psy8407          71 ----------------FAGIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        71 ----------------~~~~~~~~d~~~liayL~sl~~   92 (92)
                                      +...++++|++||++||+||+|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~Lt~~ei~dlvAYL~tL~~  138 (138)
T d1h32b_         101 FNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ  138 (138)
T ss_dssp             CSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC-
T ss_pred             cccccccccccccccccccCCCHHHHHHHHHHHHHccC
Confidence                            3345679999999999999986

>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Hydrogenobacter thermophilus [TaxId: 940]

Probab=99.78  E-value=3.1e-20  Score=104.82  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER   80 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~   80 (92)
                      ++|++||++++   ..+||+|.++.+|...               ...++++|.+||++|....++.+|++...++|+|+
T Consensus         8 ~~C~~CH~~~~---~g~gP~~~~l~~~~~~---------------~~~~~~~l~~~i~~p~~~~~~~~~~~~~~lsd~ei   69 (80)
T d1ynra1           8 KGCMACHDLKA---KKVGPAYADVAKKYAG---------------RKDAVDYLAGKIKKGGSGVWGSVPMPPQNVTDAEA   69 (80)
T ss_dssp             HTGGGTCCSSS---CSSSCCHHHHHHHHTT---------------CTTHHHHHHHHHHHCBCSSSCSSCBCCCSCCHHHH
T ss_pred             CCcHhhCCCCC---CCCCCCccchhhhccc---------------cchhHHHHHHHHHccccccccccccccccCCHHHH
Confidence            37999999985   3479999998776532               12367899999999988877755533334569999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||+|||
T Consensus        70 ~~l~~yi~sLk   80 (80)
T d1ynra1          70 KQLAQWILSIK   80 (80)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHcC
Confidence            99999999996

>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.74  E-value=4.3e-19  Score=100.33  Aligned_cols=71  Identities=20%  Similarity=0.352  Sum_probs=56.3

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC-CCCCCCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG-TKMIFAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~-~~Mp~~~~~~~~d~   80 (92)
                      +|++||++++   ..+||+|.++.++...               ...++++|.+||++|....++ ..||...+ +++|+
T Consensus        11 gC~~CH~~~g---~~~gP~~~~i~~~~~~---------------~~~~~~~l~~~i~~~~~~~~~~~~MP~~~l-sd~ei   71 (82)
T d351ca_          11 GCVACHAIDT---KMVGPAYKDVAAKFAG---------------QAGAEAELAQRIKNGSQGVWGPIPMPPNAV-SDDEA   71 (82)
T ss_dssp             TGGGTBCSSS---BSSSCCHHHHHHHHTT---------------CTTHHHHHHHHHHHCBCSSSSSSCBCCCSC-CHHHH
T ss_pred             CchhhcCCcc---cCCCCcchhHHHhccc---------------chhhHHHHHHHHHcccccccccccccccCC-CHHHH
Confidence            5999999984   3579999988776431               223688999999999776655 56985565 59999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||+|||
T Consensus        72 ~~la~Yi~SlK   82 (82)
T d351ca_          72 QTLAKWVLSQK   82 (82)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhcC
Confidence            99999999986

>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.72  E-value=3.9e-19  Score=100.36  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=55.5

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC-CCCCCCCCCCCHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP-GTKMIFAGIKKPQE   79 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p-~~~Mp~~~~~~~~d   79 (92)
                      ++|.+||++++   ..+||+|..+.++....               .-+.++|.+||++|....+ ...||....++++|
T Consensus         8 ~~C~~CH~~~~---~g~gP~~~~i~~~~~~~---------------~~~~~~l~~~i~~~~~~~~~~~~Mp~~~~Lsd~e   69 (81)
T d1a56a_           8 NNCIACHQVET---KVVGPALKDIAAKYADK---------------DDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDAD   69 (81)
T ss_dssp             HSHHHHBCSSC---BSSSCCHHHHHHHHTTS---------------SSHHHHHHHHHHHCBSSSSSSCCBCSCCSSSSHH
T ss_pred             CCcHhhCCCcC---cCccccccchhhhcccc---------------ccchhHHHHHHhcccccccCCcccccccCCCHHH
Confidence            37999999985   35799999887664311               1257899999999987654 35676433356999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      +++|++||+|||
T Consensus        70 i~~l~~Yl~slk   81 (81)
T d1a56a_          70 AKALADWILTLK   81 (81)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcC
Confidence            999999999997

>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.69  E-value=3.7e-18  Score=96.31  Aligned_cols=71  Identities=24%  Similarity=0.354  Sum_probs=55.6

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC-CCCCCCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG-TKMIFAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~-~~Mp~~~~~~~~d~   80 (92)
                      +|++||++++.   .+||+|..+.++...               ...+.++|..||++|.....+ ..||...+ +|+|+
T Consensus        11 ~C~~CH~~~~~---g~gp~~~~l~~~~~~---------------~~~~~~~l~~~i~~~~~~~~~~~~Mp~~~l-sdeei   71 (82)
T d1cora_          11 PCAACHSIDAK---LVGPAFKEVAAKYAG---------------QDGAADLLAGHIKNGSQGVWGPIPMPPNPV-TEEEA   71 (82)
T ss_dssp             THHHHCCSSSC---SSSCCHHHHHHHSTT---------------CTTHHHHHHHHHHSCBCSSSSSSCBCCCSC-CHHHH
T ss_pred             ccHHHhCCccc---CcCCcchhhhhhccc---------------cchhHHHHHHHHhcccccccccccccccCC-CHHHH
Confidence            49999999853   579999888766532               123578899999999776654 67986565 59999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||+|||
T Consensus        72 ~~la~Yi~SlK   82 (82)
T d1cora_          72 KILAEWILSQK   82 (82)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999986

>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Bacillus pasteurii [TaxId: 1474]

Probab=99.65  E-value=2.9e-17  Score=90.74  Aligned_cols=63  Identities=17%  Similarity=0.282  Sum_probs=50.4

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER   80 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~   80 (92)
                      ++|++||+.++.  +.+||+|.++..+                    ++.++|..+|+++.     ..||... ++++|+
T Consensus         9 ~~Ca~CHg~~~~--G~~gP~L~~~~~~--------------------~~~~~l~~~i~~G~-----~~MP~~~-Ls~~ei   60 (71)
T d1c75a_           9 QKCISCHGGDLT--GASAPAIDKAGAN--------------------YSEEEILDIILNGQ-----GGMPGGI-AKGAEA   60 (71)
T ss_dssp             HHTHHHHCTTSS--CSSSCCCTTGGGT--------------------SCHHHHHHHHHHCB-----TTBCSCS-SCHHHH
T ss_pred             HHHHHhCCCccc--Ccchhhccccccc--------------------cChHHHHHHHHhCc-----CCCCCCC-CCHHHH
Confidence            369999998864  4689999987543                    37899999999975     3477544 569999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      ++|++||.++|
T Consensus        61 ~~i~~Yl~~~K   71 (71)
T d1c75a_          61 EAVAAWLAEKK   71 (71)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHcC
Confidence            99999999876

>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Desulfovibrio vulgaris, different strains [TaxId: 881]

Probab=99.49  E-value=2.6e-15  Score=83.59  Aligned_cols=69  Identities=17%  Similarity=0.218  Sum_probs=44.2

Q ss_pred             CCccCccccCCC-CCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHH
Q psy8407           2 KCAQCHTIEAGG-AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQE   79 (92)
Q Consensus         2 ~C~~CH~~~~~~-~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d   79 (92)
                      +|++||..++.+ ....+|.|.+....                    +....+..|........+++.|| |...+||+|
T Consensus         9 ~Ca~CHG~~G~g~~~~~~p~l~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~Mp~~~~~Lsd~e   68 (79)
T d1c53a_           9 SCVGCHGADGSKQAMGVGHAVKGQKAD--------------------ELFKKLKGYADGSYGGEKKAVMTNLVKRYSDEE   68 (79)
T ss_pred             HHHHhCCCcccccccccCccccccchH--------------------HHHHHHHHHHHHHHhccchhccHHHHhcCCHHH
Confidence            699999998643 23456777764211                    11233333433333334567797 666678999


Q ss_pred             HHHHHHHHhhc
Q psy8407          80 RGDLIAYLEQA   90 (92)
Q Consensus        80 ~~~liayL~sl   90 (92)
                      |.+|++||++|
T Consensus        69 i~~l~aYi~sL   79 (79)
T d1c53a_          69 MKAMADYMSKL   79 (79)
T ss_pred             HHHHHHHHHhC
Confidence            99999999986

>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: p-Cresol methylhydroxylase, cytochrome c subunit
species: Pseudomonas putida [TaxId: 303]

Probab=99.44  E-value=6.5e-14  Score=77.53  Aligned_cols=60  Identities=23%  Similarity=0.400  Sum_probs=46.4

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC-CCCCHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA-GIKKPQ   78 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~-~~~~~~   78 (92)
                      ++|++||..++    ..||+|.+.                      .|++++|...|++...     .|| |. ..++++
T Consensus        12 ~~Ca~CHg~~g----~~~p~l~~~----------------------~~~~~~i~~~i~~G~~-----~MP~~~~~~lsd~   60 (74)
T d1wvec1          12 KVCGHCHKPEV----GVGPVLEGR----------------------GLPEAYIKDIVRNGFR-----AMPAFPASYVDDE   60 (74)
T ss_dssp             HTTHHHHSTTT----CSSCCCTTS----------------------CCCHHHHHHHHHHCBT-----TBCCCCTTTSCHH
T ss_pred             HHHHHHhcccC----cchhhcccc----------------------chhHHHHHHHHHhhcc-----cccccccccCCHH
Confidence            37999998764    458988752                      2578999999998642     376 42 356799


Q ss_pred             HHHHHHHHHhhcc
Q psy8407          79 ERGDLIAYLEQAS   91 (92)
Q Consensus        79 d~~~liayL~sl~   91 (92)
                      |+.+|++||++|.
T Consensus        61 ei~~l~~Yi~slp   73 (74)
T d1wvec1          61 SLTQVAEYLSSLP   73 (74)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999986

>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.41  E-value=7.6e-14  Score=79.15  Aligned_cols=70  Identities=17%  Similarity=0.201  Sum_probs=43.6

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHh---CC---CCCCCCCCCC-CCCC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE---NP---KKYIPGTKMI-FAGI   74 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~---~P---~~~~p~~~Mp-~~~~   74 (92)
                      +|++||..++.+.....|.|.+...                    .|....+..+..   ..   ........|| |...
T Consensus        13 ~Ca~CHg~~G~g~~~~~p~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Mp~~~~~   72 (92)
T d1m70a1          13 VCGACHGVDGNSPAPNFPKLAGQGE--------------------RYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGMLDP   72 (92)
T ss_dssp             GGHHHHCTTSCCCCTTSCCCTTCCH--------------------HHHHHHHHHHHHHHSTTCCTTSSCCCGGGTTTTTT
T ss_pred             HHHHhCCCcccccchhhccccchhh--------------------HHHHHHHHHhhhhhhhhhhccccccccchHHHHhh
Confidence            5999999997655555666665321                    112223333322   11   1122345687 6666


Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      +||+||++|++||+||+
T Consensus        73 Lsd~ei~dl~aYi~sl~   89 (92)
T d1m70a1          73 LSDQDLEDIAAYFSSQK   89 (92)
T ss_dssp             CCHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHCC
Confidence            77999999999999987

>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.41  E-value=4.4e-14  Score=78.90  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=45.4

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQE   79 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d   79 (92)
                      ++|++||..++.+.+...|.|.+....                    ...+.|..|...   ...+..|| +...+|++|
T Consensus         9 ~~Ca~CHG~~G~g~~~~~p~l~~~~~~--------------------~~~~~l~~~~~g---~~~~~~M~~~~~~Lsd~e   65 (80)
T d1fcdc1           9 NNCAGCHGTHGNSVGPASPSIAQMDPM--------------------VFVEVMEGFKSG---EIASTIMGRIAKGYSTAD   65 (80)
T ss_dssp             HTTTTTSCGGGCCCSSSSCCCSSCCHH--------------------HHHHHHHHHHHT---CSCCSSHHHHHTTSCHHH
T ss_pred             HHHHHhCcCcccCcccccchhhhhhHH--------------------HHHHHHHHHHHh---hhhhhhHHHHHccCCHHH
Confidence            379999999986655667888764211                    123445444432   22345686 545567999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      |++|++||.+++
T Consensus        66 i~~la~Y~~sq~   77 (80)
T d1fcdc1          66 FEKMAGYFKQQT   77 (80)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHHHhCC
Confidence            999999998875

>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.40  E-value=1.3e-14  Score=82.00  Aligned_cols=71  Identities=21%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQE   79 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d   79 (92)
                      ++|++||..++.+....+|.|.+....                    +....|..|........+...|+ +...++|+|
T Consensus        12 ~~Ca~CHg~~G~g~~~~~P~L~g~~~~--------------------y~~~~l~~~~~g~r~~~~~~~m~~~~~~Lsd~d   71 (86)
T d1cnoa_          12 AVCAACHGQNGISQVPIYPNLAGQKEQ--------------------YLVAALKAYKAGQRQGGQAPVMQGQATALSDAD   71 (86)
T ss_dssp             GGTHHHHCTTSCCSSTTSCCCTTCCHH--------------------HHHHHHHHHHTTCBCSTTHHHHHHHHTTCCHHH
T ss_pred             HHHHHhcCcccccccccCcccccchHH--------------------HHHHHHHHHHhccccCCcchhhHHHHccCCHHH
Confidence            369999999976555667988874211                    13445555544333222333453 434456999


Q ss_pred             HHHHHHHHhhcc
Q psy8407          80 RGDLIAYLEQAS   91 (92)
Q Consensus        80 ~~~liayL~sl~   91 (92)
                      |++|++||.||.
T Consensus        72 i~~laaYi~slp   83 (86)
T d1cnoa_          72 IANLAAYYASNP   83 (86)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCC
Confidence            999999999985

>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]

Probab=99.36  E-value=1.3e-12  Score=73.53  Aligned_cols=70  Identities=19%  Similarity=0.245  Sum_probs=44.8

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER   80 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~   80 (92)
                      ++|++||..++.+. ..+|.+.....+..                ...+.+.|...|+++..    .+++|...++++|+
T Consensus        12 ~~Ca~CHg~~g~g~-~~~~~~~~~~~~~~----------------~~~~~~~~~~~i~~g~~----~mp~~~~~Ls~~ei   70 (87)
T d1c6sa_          12 GNCAACHMGGGNVV-MANKTLKKEALEQF----------------GMYSEDAIIYQVQHGKN----AMPAFAGRLTDEQI   70 (87)
T ss_dssp             TTGGGGCTTTCCSS-SSSCCSSSTTTTTS----------------SCCSHHHHHHHHSSCBT----TBCCCTTTSCSHHH
T ss_pred             HHChhhhhhccccc-ccCCCccchhhhhh----------------ccCcHHHHHHHHHcCcc----ccccccCCCCHHHH
Confidence            47999999986542 22343332211111                12357788888887642    23346676789999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      .+|++||.+..
T Consensus        71 ~~v~aYi~~~a   81 (87)
T d1c6sa_          71 QDVAAYVLDQA   81 (87)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.36  E-value=5e-13  Score=82.51  Aligned_cols=69  Identities=22%  Similarity=0.194  Sum_probs=50.5

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG   81 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~   81 (92)
                      +|++||..++.  +..||.|.+-....                +..++...|...|.+..   +++|||+.+.++++|+.
T Consensus        56 ~Ca~CHG~~g~--G~~~P~l~~~~~~~----------------~~~~~~~~i~~~i~~G~---~~~Mp~~~~~Ls~~ei~  114 (147)
T d2gc4d1          56 MCSGCHGHYAE--GKIGPGLNDAYWTY----------------PGNETDVGLFSTLYGGA---TGQMGPMWGSLTLDEML  114 (147)
T ss_dssp             HTHHHHCTTSS--CSSSCCCSSSCCSS----------------GGGGSHHHHHHHHHHCC---STTCCCCTTTSCHHHHH
T ss_pred             hcccccCcCCC--CCCcccCCCchhhh----------------hhhhHHHHHHHHHHhhc---cccccccccCCCHHHHH
Confidence            69999998864  46799998632221                11235667888888643   35677887777899999


Q ss_pred             HHHHHHhhcc
Q psy8407          82 DLIAYLEQAS   91 (92)
Q Consensus        82 ~liayL~sl~   91 (92)
                      +|++||++++
T Consensus       115 ~lvaYi~sl~  124 (147)
T d2gc4d1         115 RTMAWVRHLY  124 (147)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999999875

>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=99.34  E-value=1.2e-13  Score=80.60  Aligned_cols=66  Identities=17%  Similarity=0.258  Sum_probs=47.2

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.+ +..+|+|..+..                     ++.+.+..+|++..  ...+.|| |.+.++++||
T Consensus        30 ~Ca~CHg~~g~g-~~~~p~l~~~~~---------------------~~~~~~~~~i~~g~--~~~~~Mp~~~~~Lsd~ei   85 (104)
T d1kv9a1          30 FCSVCHGMGTIS-GGLIPDLRQSSD---------------------ATREHFQQIVLQGA--LKPLGMPSFDDSLKPEEV   85 (104)
T ss_dssp             HTHHHHCGGGCC-CSSSCCGGGCCH---------------------HHHHTHHHHHHHCT--TGGGTCCCCTTTCCHHHH
T ss_pred             HhhhhccCCCCC-CCCCCccccccc---------------------cchHHHHHHHHhhh--cccccCCccccCCCHHHH
Confidence            699999988754 456788875421                     24666777777642  2234587 6667789999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      .+|++||+++.
T Consensus        86 ~~v~aYi~s~~   96 (104)
T d1kv9a1          86 EQIKLYVMSRE   96 (104)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999999864

>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=99.34  E-value=8e-14  Score=80.43  Aligned_cols=67  Identities=18%  Similarity=0.219  Sum_probs=44.5

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.+.+...|.+....                     .++.+.+..+|.+...  +...|| |.+.++++|+
T Consensus        25 ~Ca~CHG~~g~g~~~~~~~~~~~~---------------------~~~~~~~~~~i~~g~~--~~~~MP~~~~~Ls~~ei   81 (97)
T d1kb0a1          25 NCVFCHGVPGVDRGGNIPNLGYMD---------------------ASYIENLPNFVFKGPA--MVRGMPDFTGKLSGDDV   81 (97)
T ss_dssp             HTHHHHCSTTTSCCSSSCCGGGSC---------------------HHHHHTHHHHHSSCTT--GGGTCCCCTTTSCTTHH
T ss_pred             HhHHhhCCCCCCCCCccccccccc---------------------ccchHHHHHHHHhccc--ccCCCcccccCCCHHHH
Confidence            699999988654434444443321                     2245667788876432  223487 6666789999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      .+|++||+++.
T Consensus        82 ~~i~aYl~~~a   92 (97)
T d1kb0a1          82 ESLKAFIQGTA   92 (97)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998753

>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.33  E-value=7.9e-14  Score=82.71  Aligned_cols=65  Identities=18%  Similarity=0.275  Sum_probs=47.1

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC--CCCCHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA--GIKKPQ   78 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~--~~~~~~   78 (92)
                      +|++||..++.  |.+||+|..-..                   ...++++|..+|++..   ++ .|| |.  +.++++
T Consensus        41 ~Ca~CHG~~g~--G~~gP~L~~~~~-------------------~~~~~~~l~~~I~~G~---~~-~MP~~~~~~~Lsd~   95 (112)
T d1nira1          41 RCAGCHGVLRK--GATGKPLTPDIT-------------------QQRGQQYLEALITYGT---PL-GMPNWGSSGELSKE   95 (112)
T ss_dssp             HTHHHHTTTTC--CSSSSCCSHHHH-------------------HHHCHHHHHHHHHHCC---SS-SCCCSTTTTSSCHH
T ss_pred             HcccccccCcc--cccchhhhhhhh-------------------hhhhhhhhhhhhhhcc---cc-cCCCccccCCCCHH
Confidence            69999999863  467999863111                   1126788999999863   23 477 53  346799


Q ss_pred             HHHHHHHHHhhcc
Q psy8407          79 ERGDLIAYLEQAS   91 (92)
Q Consensus        79 d~~~liayL~sl~   91 (92)
                      ||.+|++||+++.
T Consensus        96 ei~~l~~Yv~~~~  108 (112)
T d1nira1          96 QITLMAKYIQHTP  108 (112)
T ss_dssp             HHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999999864

>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=5.6e-14  Score=84.95  Aligned_cols=74  Identities=19%  Similarity=0.161  Sum_probs=49.9

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCC-------CCCCCCCCCCC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKY-------IPGTKMIFAGI   74 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~-------~p~~~Mp~~~~   74 (92)
                      +|++||..++.|...++|.|.+.....               ....++.+.+.+.|.+....       ....+||+.+.
T Consensus        10 ~Ca~CHG~~G~G~~~~~p~l~~~~~~~---------------~~~~~~~~~~~~~i~~g~~~~~~~~g~~~~~m~~~~~~   74 (131)
T d1c52a_          10 QCAGCHQQNGQGIPGAFPPLAGHVAEI---------------LAKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSFAQ   74 (131)
T ss_dssp             HHHHHHCTTSCCBTTTBCCCTTHHHHH---------------HTSTTHHHHHHHHHHHCEEEEEEETTEEEEEEECCCTT
T ss_pred             HHHHHcCCCCCCCCCCCCccCCCcccc---------------ccccCCHHHHHHHHHcccccccccCCcccccccccccC
Confidence            699999999876566788887632111               01234567777777764211       11236777777


Q ss_pred             CCHHHHHHHHHHHhhc
Q psy8407          75 KKPQERGDLIAYLEQA   90 (92)
Q Consensus        75 ~~~~d~~~liayL~sl   90 (92)
                      ++|+||.+|++||++.
T Consensus        75 LsD~eI~av~~YIr~~   90 (131)
T d1c52a_          75 LKDEEIAAVLNHIATA   90 (131)
T ss_dssp             SCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            7899999999999863

>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c550
species: Thermosynechococcus elongatus [TaxId: 146786]

Probab=99.31  E-value=2.8e-13  Score=81.36  Aligned_cols=75  Identities=17%  Similarity=0.177  Sum_probs=46.9

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCC-------------CCCC
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYI-------------PGTK   68 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~-------------p~~~   68 (92)
                      +|++||..++.   ..+|.+..........            ..-.++.+.|..||++|....             +...
T Consensus        36 ~Ca~CH~~~g~---g~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (131)
T d1mz4a_          36 ACASCHVGGIT---KTNPSLDLRTETLALA------------TPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADI  100 (131)
T ss_dssp             HTHHHHGGGCC---TTCGGGCCCHHHHHTS------------SSCCSSHHHHHHHHHSCBCTTSSSBCTTTSCCGGGTTT
T ss_pred             HhHHHcCCCCC---CCCCcccccccccccc------------cCcccccccccccccCcccccccchhhhhcccccCCCC
Confidence            69999987743   3345443322111000            012347889999999975321             2356


Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          69 MIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        69 Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      ||...-++|+|+++|++||.++.
T Consensus       101 MP~f~~Lsdeei~av~aYi~~~p  123 (131)
T d1mz4a_         101 FPKMRNLTEKDLVAIAGHILVEP  123 (131)
T ss_dssp             SGGGTTCCHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCHHHHHHHHHHHHhcC
Confidence            88444356999999999998763

>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=99.28  E-value=8.3e-14  Score=77.95  Aligned_cols=71  Identities=17%  Similarity=0.258  Sum_probs=42.5

Q ss_pred             CCCccCccccCCCC-CCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCC-CCCCCCC-CCCCCCH
Q psy8407           1 MKCAQCHTIEAGGA-HKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKY-IPGTKMI-FAGIKKP   77 (92)
Q Consensus         1 ~~C~~CH~~~~~~~-~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~-~p~~~Mp-~~~~~~~   77 (92)
                      .+|++||..++.|. ....|.|.+....                    +....+..+....... .+++.|| |...+||
T Consensus         3 ~~Ca~CHG~~G~G~~~~~~P~l~g~~~~--------------------~~~~~~~~~~~g~r~~~~~~~~M~~~~~~LSd   62 (82)
T d1h1oa1           3 SDCMVCHGMTGRDTLYPIVPRLAGQHKS--------------------YMEAQLKAYKDHSRADQNGEIYMWPVAQALDS   62 (82)
T ss_dssp             GGTHHHHCBTTBCCSSTTSCCCTTCCHH--------------------HHHHHHHHHHTTCCCCHHHHHHTHHHHHTCCH
T ss_pred             chhHHhCCCcCCCCcccccccccCCcHH--------------------HHHHHHHHhhhhhhhcccccccchHHHhhCCH
Confidence            47999999997542 2345777653211                    1233344343322111 1234587 5455679


Q ss_pred             HHHHHHHHHHhhcc
Q psy8407          78 QERGDLIAYLEQAS   91 (92)
Q Consensus        78 ~d~~~liayL~sl~   91 (92)
                      +||++|++||++++
T Consensus        63 ~eI~~la~Yi~sl~   76 (82)
T d1h1oa1          63 AKITALADYFNAQK   76 (82)
T ss_dssp             HHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999999986

>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome ScyA
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.26  E-value=1.1e-11  Score=69.07  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=39.5

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC---CCCCCCH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI---FAGIKKP   77 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp---~~~~~~~   77 (92)
                      ++|++||..++.|....+|..... .+.                  .-+.+.|...+.+...     .||   +...+||
T Consensus        12 ~~Ca~CHg~~~~G~p~~~~~~~~~-~~~------------------~~~~~~~~~~~~~g~~-----~mp~~g~~~~Lsd   67 (81)
T d1kx7a_          12 KACTVCHSMGVAGAPKSHNTADWE-PRL------------------AKGVDNLVKSVKTGLN-----AMPPGGMCTDCTD   67 (81)
T ss_dssp             HTTTSSTTTTCTTCCCSSCSTTTT-TTT------------------TTCSHHHHHHHHHCCS-----SSCTTTTCSSCCH
T ss_pred             HHHHHHccCCCCCCCCCCChhhhh-hcc------------------cccHHHHHHHHHhhcc-----cccccccccCCCH
Confidence            379999998765432333322211 111                  1134556677776543     244   3345779


Q ss_pred             HHHHHHHHHHhhcc
Q psy8407          78 QERGDLIAYLEQAS   91 (92)
Q Consensus        78 ~d~~~liayL~sl~   91 (92)
                      +||.+|++||...|
T Consensus        68 ~ei~~v~~Yi~~ak   81 (81)
T d1kx7a_          68 EDYKAAIEFMSKAK   81 (81)
T ss_dssp             HHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999998654

>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Ectothiorhodospira halophila [TaxId: 1053]

Probab=99.26  E-value=8.2e-13  Score=73.63  Aligned_cols=63  Identities=22%  Similarity=0.308  Sum_probs=40.5

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.|....+|.+... .+                   .-..+.+...+.++.     ..|| |.+.++++||
T Consensus        13 ~CasCHg~~g~G~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~g~-----~~MPa~g~~LsdeeI   67 (78)
T d1gksa_          13 TCSSCHDRGVAGAPELNAPEDWA-DR-------------------PSSVDELVESTLAGK-----GAMPAYDGRADREDL   67 (78)
T ss_dssp             CSHHHHTTTGGGCCCTTCHHHHH-TS-------------------CCCHHHHHHHHHHCB-----TTBCCCBTTBCHHHH
T ss_pred             hhHHHhccCCCCCCCCCChhHcc-cc-------------------chhHHHHHHHhhhcc-----cccCccCCCCCHHHH
Confidence            69999998865433344433211 00                   013455666676654     3466 6677889999


Q ss_pred             HHHHHHHhh
Q psy8407          81 GDLIAYLEQ   89 (92)
Q Consensus        81 ~~liayL~s   89 (92)
                      ++|++||.+
T Consensus        68 ~~v~~Yi~~   76 (78)
T d1gksa_          68 VKAIEYMLS   76 (78)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999976

>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=99.24  E-value=2.9e-12  Score=77.33  Aligned_cols=43  Identities=26%  Similarity=0.159  Sum_probs=32.1

Q ss_pred             ccHHHHHHHHhCCCCC-------------CCCCCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407          48 WNKDTLFEYLENPKKY-------------IPGTKMIFAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        48 ~~~~~l~~~i~~P~~~-------------~p~~~Mp~~~~~~~~d~~~liayL~sl   90 (92)
                      .+.+.|..|+++|...             .+..+||....++++|+++|++||+++
T Consensus        67 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~mp~~~~Lsdedi~~vaaYi~~q  122 (135)
T d1e29a_          67 DNVLALVEFLKNPKSYDGEDDYSELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIA  122 (135)
T ss_dssp             SSHHHHHHHHHSCBCTTSCSBCTTTSCCTTCTTTCGGGTTCCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhhhcccchhhhhhhHHHhhccccCCCCCCccCCCCHHHHHHHHHHHHhc
Confidence            3678899999987432             234567755556799999999999875

>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Arthrospira maxima [TaxId: 129910]

Probab=99.23  E-value=2.8e-12  Score=76.61  Aligned_cols=44  Identities=16%  Similarity=0.211  Sum_probs=32.0

Q ss_pred             ccHHHHHHHHhCCCCC-------------CCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407          48 WNKDTLFEYLENPKKY-------------IPGTKMIFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        48 ~~~~~l~~~i~~P~~~-------------~p~~~Mp~~~~~~~~d~~~liayL~sl~   91 (92)
                      ++...+..|+.++...             .+...||..+.++|+|+++|++||+++.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mp~~~~Lsdedi~ai~aYi~~~p  121 (129)
T d1f1ca_          65 DNIAALVDYIKNPTTYDGFVEISELHPSLKSSDIFPKMRNISEDDLYNVAGYILLQP  121 (129)
T ss_dssp             CSHHHHHHHHHSCBCTTSCSBCTTTSCSTTCTTTCGGGSSCCHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhcCcccccccccceeecccccCCCCCCccccCCHHHHHHHHHHHHHcc
Confidence            4667888888876442             1345687555566999999999999873

>d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.22  E-value=1.3e-12  Score=78.91  Aligned_cols=66  Identities=20%  Similarity=0.301  Sum_probs=47.0

Q ss_pred             CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC--CCCCH
Q psy8407           1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA--GIKKP   77 (92)
Q Consensus         1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~--~~~~~   77 (92)
                      ++|++||..++.  |.+||+|..-..                   ..++.+.|...|++..   ++ .|| |.  +.+++
T Consensus        55 ~~Ca~CHg~~g~--G~~gp~l~~~~~-------------------~~~~~~~l~~~I~~G~---~~-~MP~fg~~~~Lsd  109 (127)
T d1qksa1          55 ERCAGCHGVLRK--GATGKALTPDLT-------------------RDLGFDYLQSFITYAS---PA-GMPNWGTSGELSA  109 (127)
T ss_dssp             HHTHHHHCTTSS--CSSSCCCCHHHH-------------------HHHCHHHHHHHHTTCC---CC-CCTTTSCCCCCCH
T ss_pred             HHhHHhcCCcCC--CCcCCCccchhh-------------------hccCHHHHHHHHHhcc---cc-cCcccccCCCCCH
Confidence            369999998864  468999863110                   1236778999998742   23 487 53  35779


Q ss_pred             HHHHHHHHHHhhcc
Q psy8407          78 QERGDLIAYLEQAS   91 (92)
Q Consensus        78 ~d~~~liayL~sl~   91 (92)
                      +||.+|++||++..
T Consensus       110 ~ei~~l~~Yi~~~~  123 (127)
T d1qksa1         110 EQVDLMANYLLLDP  123 (127)
T ss_dssp             HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999998753

>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.21  E-value=1.4e-12  Score=74.55  Aligned_cols=24  Identities=13%  Similarity=0.153  Sum_probs=19.5

Q ss_pred             CC-CCCCCCCHHHHHHHHHHHhhcc
Q psy8407          68 KM-IFAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        68 ~M-p~~~~~~~~d~~~liayL~sl~   91 (92)
                      .| ++...+||+||++|++||.|+|
T Consensus        70 ~M~~~~~~LSd~di~alaaY~~Sqk   94 (94)
T d1fcdc2          70 KLRELLKAEGDAGLDALFAFYASQQ   94 (94)
T ss_dssp             HHHTTGGGSTHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC
Confidence            35 4666667999999999999975

>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium extorquens [TaxId: 408]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c-L (MoxG)
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.15  E-value=3.9e-11  Score=73.88  Aligned_cols=68  Identities=24%  Similarity=0.261  Sum_probs=44.2

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.  +..+|.+..-...         +       +...+...|...|++..   . +.|| |...++++||
T Consensus        41 ~Ca~CHg~~g~--G~~~~~~~~~~~~---------~-------~~~~~~~~~~~~i~~G~---~-~~MP~~~~~Lsdeei   98 (149)
T d2c8sa1          41 SCSGCHGHLAE--GKLGPGLNDNYWT---------Y-------PSNTTDVGLFATIFGGA---N-GMMGPHNENLTPDEM   98 (149)
T ss_dssp             HTHHHHCTTSS--CSSSCCSSSSCCS---------S-------GGGGSHHHHHHHHHTCT---T-SSSCSCCCCSCHHHH
T ss_pred             hCccccCCCCC--CCcccCCCCcccc---------c-------ccchhhhHHHHHHhccc---c-ccccccccCCCHHHH
Confidence            69999999864  3445555432111         1       01235567777887642   2 3576 6556779999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      .+|++||+++.
T Consensus        99 ~~ivaYvr~l~  109 (149)
T d2c8sa1          99 LQTIAWIRHLY  109 (149)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            99999999874

>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Arthrospira maxima [TaxId: 129910]

Probab=99.15  E-value=2.7e-12  Score=72.14  Aligned_cols=72  Identities=22%  Similarity=0.151  Sum_probs=43.5

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER   80 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~   80 (92)
                      +|++||..++.+ ...+|.|........  .          ........+.+...++++.     +.|| |...++++||
T Consensus        12 ~Ca~CHg~~g~g-~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~g~-----~~Mp~~~~~Lsd~ei   73 (88)
T d1f1fa_          12 NCAACHMGGRNV-IVANKTLSKSDLAKY--L----------KGFDDDAVAAVAYQVTNGK-----NAMPGFNGRLSPLQI   73 (88)
T ss_dssp             HTHHHHGGGCCS-SSTTCCSSHHHHHHH--S----------TTTTTCHHHHHHHHHHHCB-----TTBCCCTTTSCHHHH
T ss_pred             HHHHhhcCcccC-CccCCCCCccchhhh--c----------cccccchHHHHHHHHhcCc-----CCCCcccCCCCHHHH
Confidence            699999988643 233444442211100  0          0011234556677777764     2465 6677789999


Q ss_pred             HHHHHHHhhcc
Q psy8407          81 GDLIAYLEQAS   91 (92)
Q Consensus        81 ~~liayL~sl~   91 (92)
                      .+|++||.++.
T Consensus        74 ~~v~aYi~~~a   84 (88)
T d1f1fa_          74 EDVAAYVVDQA   84 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Green alga (Cladophora glomerata) [TaxId: 162068]

Probab=99.15  E-value=4.2e-12  Score=71.83  Aligned_cols=37  Identities=14%  Similarity=0.129  Sum_probs=28.3

Q ss_pred             cHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHhhc
Q psy8407          49 NKDTLFEYLENPKKYIPGTKMI-FAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~~~liayL~sl   90 (92)
                      ..+.+...++++.     +.|| |...++++||.+|++||.+.
T Consensus        48 ~~~~~~~~~~~g~-----~~MP~~~~~Lsdeei~~l~aYi~~~   85 (91)
T d1ls9a_          48 TLEAIKYQVNNGK-----GAMPAWADRLDEDDIEAVSNYVYDQ   85 (91)
T ss_dssp             CHHHHHHHHHHCB-----TTBCCCTTTSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCc-----CCCcccccCCCHHHHHHHHHHHHHH
Confidence            4667777777764     3477 65667899999999999875

>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Red alga (Porphyra yezoensis) [TaxId: 2788]

Probab=99.11  E-value=8.3e-12  Score=69.79  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             cHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHhhcc
Q psy8407          49 NKDTLFEYLENPKKYIPGTKMI-FAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~~~liayL~sl~   91 (92)
                      +.+.+...++++.     ..|| |...++++|+.+|++||.++.
T Consensus        43 ~~~~~~~~~~~g~-----~~Mp~~~~~Lsd~ei~~v~~Yi~~~a   81 (85)
T d1gdva_          43 TIDAITYQVQNGK-----NAMPAFGGRLVDEDIEDAANYVLSQS   81 (85)
T ss_dssp             SHHHHHHHHHHCB-----TTBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCC-----CCCCcccCCCCHHHHHHHHHHHHHHH
Confidence            5677888888874     2365 666778999999999998863

>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c5
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.11  E-value=1.8e-12  Score=72.62  Aligned_cols=18  Identities=11%  Similarity=-0.067  Sum_probs=15.7

Q ss_pred             CCCCHHHHHHHHHHHhhc
Q psy8407          73 GIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        73 ~~~~~~d~~~liayL~sl   90 (92)
                      ..+||+||++|++||.+|
T Consensus        66 ~~Lsd~ei~~vv~Yi~~L   83 (83)
T d1cc5a_          66 ADCSDDELKAAIGKMSGL   83 (83)
T ss_dssp             SSCCHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHhhC
Confidence            456799999999999986

>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Monoraphidium braunii [TaxId: 34112]

Probab=99.10  E-value=9.3e-12  Score=70.21  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=29.9

Q ss_pred             cHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHhhcc
Q psy8407          49 NKDTLFEYLENPKKYIPGTKMI-FAGIKKPQERGDLIAYLEQAS   91 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~~~liayL~sl~   91 (92)
                      ..+.+...++++.     +.|| |.+.++++||.+|++||.++.
T Consensus        46 ~~~~~~~~~~~g~-----~~Mp~~~~~Lsd~ei~~v~~Yi~~~~   84 (89)
T d1ctja_          46 NIEAIVYQIENGK-----GAMPAWDGRLDEDEIAGVAAYVYDQA   84 (89)
T ss_dssp             SHHHHHHHHHHCB-----TTBCCCBTTBCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcCc-----CCCCccCCCCCHHHHHHHHHHHHHHc
Confidence            5677888888874     3466 666778999999999999863

>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.10  E-value=9.9e-12  Score=70.22  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=29.1

Q ss_pred             cHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHhhc
Q psy8407          49 NKDTLFEYLENPKKYIPGTKMI-FAGIKKPQERGDLIAYLEQA   90 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~~~liayL~sl   90 (92)
                      +.+.+...|+++..     .|| |...++++||.+|++||.+.
T Consensus        45 ~~~~i~~~i~~g~~-----~mp~~~~~Lsd~ei~~v~aYi~~~   82 (90)
T d1cyja_          45 KVESIIYQVENGKG-----AMPAWADRLSEEEIQAVAEYVFKQ   82 (90)
T ss_dssp             SHHHHHHHHHHCBT-----TBCCCTTTSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCcC-----CCCcccCCCCHHHHHHHHHHHHHH
Confidence            56788888888752     465 66667899999999999875

>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.00  E-value=8.3e-11  Score=67.87  Aligned_cols=66  Identities=18%  Similarity=0.203  Sum_probs=40.6

Q ss_pred             CCccCccccCCCC-CCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHh---CCCCC--CCCCCCC-CCCC
Q psy8407           2 KCAQCHTIEAGGA-HKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE---NPKKY--IPGTKMI-FAGI   74 (92)
Q Consensus         2 ~C~~CH~~~~~~~-~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~---~P~~~--~p~~~Mp-~~~~   74 (92)
                      .|.+||..++.+. ....|.|.+.                        +.++|...|+   +....  .++..|+ +..-
T Consensus        26 ~C~~CHg~~G~g~~~~~~P~L~G~------------------------~~~Yl~~qL~~~~~g~r~~~~~~~~M~~~~~~   81 (98)
T d1m70a2          26 ACTGCHAPNGVGNDLAGFPKLGGQ------------------------HAAYTAKQLTDFREGNRTNDGDTMIMRGVAAK   81 (98)
T ss_dssp             CSHHHHCTTSCCBGGGTBCCCTTC------------------------CHHHHHHHHHHHHHTSCCTTTTTCHHHHHHTT
T ss_pred             hhhhcCCCccccCcCCCCCccccc------------------------hHHHHHHHHHHHHhccccCCchhhhHHHHHHh
Confidence            4999999997532 2235777763                        2344444333   22221  2334576 4334


Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      +|++||++|++||.||.
T Consensus        82 lsd~di~~la~YiasL~   98 (98)
T d1m70a2          82 LSNKDIEALSSYIQGLH   98 (98)
T ss_dssp             CCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            56999999999999974

>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=98.97  E-value=3.3e-11  Score=68.77  Aligned_cols=64  Identities=25%  Similarity=0.284  Sum_probs=39.4

Q ss_pred             CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCC-CCCCCCCCCC-CCCCCCHHH
Q psy8407           2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP-KKYIPGTKMI-FAGIKKPQE   79 (92)
Q Consensus         2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P-~~~~p~~~Mp-~~~~~~~~d   79 (92)
                      .|.+||..++.+. ..-|.|.|.                        +.++|.+-|++= .+...+..|+ +..-++++|
T Consensus        25 ~C~~CHG~~G~g~-~~~P~LaGq------------------------~~~Yl~~qL~~f~~g~R~~~~M~~~a~~lsd~e   79 (90)
T d1h1oa2          25 ACMECHGSDGQGA-GPFPRLAGQ------------------------RYGYIIQQLTYFHNGTRVNTLMNQIAKNITVAQ   79 (90)
T ss_dssp             CTHHHHCTTSCCB-TTBCCCTTC------------------------CHHHHHHHHHHHHHTSSCCHHHHHHHTTCCHHH
T ss_pred             hhhhcCCCccCCC-CCCCccCCC------------------------CHHHHHHHHHHHHcCCcCchHHHHHHHhCCHHH
Confidence            3999999987542 224888874                        233444333310 0122345575 433456999


Q ss_pred             HHHHHHHHhhc
Q psy8407          80 RGDLIAYLEQA   90 (92)
Q Consensus        80 ~~~liayL~sl   90 (92)
                      |++|++||.+|
T Consensus        80 i~~la~Y~asL   90 (90)
T d1h1oa2          80 MKDVAAYLSSL   90 (90)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999986

>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.27  E-value=2.9e-06  Score=52.30  Aligned_cols=17  Identities=18%  Similarity=0.366  Sum_probs=15.4

Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      ++++|+++||+||+||+
T Consensus       118 Lt~~e~~~LvaFL~tLt  134 (160)
T d1nmla2         118 LNNDEVKSIVAFLKTLT  134 (160)
T ss_dssp             CCHHHHHHHHHHHGGGC
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            45999999999999995

>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.15  E-value=6.3e-06  Score=50.67  Aligned_cols=17  Identities=24%  Similarity=0.532  Sum_probs=15.4

Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      ++++|+++||+||+||+
T Consensus       120 Ls~~e~~~LvaFL~sLt  136 (159)
T d1eb7a2         120 LAPDDVENIVAFLHSLS  136 (159)
T ss_dssp             CCHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            45999999999999985

>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.98  E-value=1.1e-06  Score=54.10  Aligned_cols=17  Identities=18%  Similarity=0.378  Sum_probs=15.4

Q ss_pred             CCHHHHHHHHHHHhhcc
Q psy8407          75 KKPQERGDLIAYLEQAS   91 (92)
Q Consensus        75 ~~~~d~~~liayL~sl~   91 (92)
                      ++++|+++||+||+||+
T Consensus       117 Ls~~E~~~LvaFL~sLt  133 (158)
T d1iqca2         117 FNKDEVSKIVAFLKTLT  133 (158)
T ss_dssp             CCHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            45999999999999985

>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.13  E-value=0.00021  Score=39.42  Aligned_cols=15  Identities=27%  Similarity=0.558  Sum_probs=13.2

Q ss_pred             CCHHHHHHHHHHHhh
Q psy8407          75 KKPQERGDLIAYLEQ   89 (92)
Q Consensus        75 ~~~~d~~~liayL~s   89 (92)
                      ++++|++.|++||..
T Consensus        51 l~~~e~~~Iv~YLa~   65 (85)
T d1pbya1          51 LEPEERAAIVRHLSD   65 (85)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            469999999999975

>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Pseudomonas putida [TaxId: 303]

Probab=96.66  E-value=0.00021  Score=39.34  Aligned_cols=15  Identities=27%  Similarity=0.534  Sum_probs=13.1

Q ss_pred             CCHHHHHHHHHHHhh
Q psy8407          75 KKPQERGDLIAYLEQ   89 (92)
Q Consensus        75 ~~~~d~~~liayL~s   89 (92)
                      ++++|++.|++||..
T Consensus        51 l~~~e~~~Iv~YLa~   65 (84)
T d1jmxa1          51 ISDDDRRTLVKYLAD   65 (84)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            459999999999975

>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c''
species: Methylophilus methylotrophus, strain w3a1 [TaxId: 17]

Probab=96.02  E-value=0.00071  Score=39.32  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407          49 NKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQASK   92 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~~   92 (92)
                      +.+.+.+|++.--..+      +...=+.+|-.|+++||.+.+|
T Consensus        84 D~akvEKWf~RNC~dv------~gReCTa~EKgD~l~~L~sq~r  121 (124)
T d1gu2a_          84 DIDKVEDEFTKHCNDI------LGADCSPSEKANFIAYLLTETK  121 (124)
T ss_dssp             CHHHHHHHHHHHHHHH------HSSCCCHHHHHHHHHHHHHCCS
T ss_pred             CHHHHHHHHHhhcHhh------hcccCCHHHhhhHHHHHHhccc
Confidence            5666777766211000      1122359999999999998764

>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c {Rhodobacter sphaeroides [TaxId: 1063]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: SHP, an oxygen binding cytochrome c
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.28  E-value=0.0028  Score=36.28  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhh
Q psy8407          49 NKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQ   89 (92)
Q Consensus        49 ~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~s   89 (92)
                      +.+.+.+|++.--..+      +..-=+.+|-.|+++||.+
T Consensus        77 D~akVEKWF~RNC~dV------lgReCTa~EKgD~l~~L~s  111 (112)
T d1dw0a_          77 DSARVEKWLGRNCNSV------IGRDCTPGEKADLLAWLAA  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHH------HSSCCCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhhchhh------hccccCHHHhhhHHHHHhc
Confidence            5667777776211000      1122359999999999986

>d1h32a2 a.3.1.8 (A:151-261) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c SoxA
domain: Di-heme cytochrome c SoxA
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=95.04  E-value=0.0054  Score=34.89  Aligned_cols=16  Identities=19%  Similarity=0.158  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHhhccC
Q psy8407          77 PQERGDLIAYLEQASK   92 (92)
Q Consensus        77 ~~d~~~liayL~sl~~   92 (92)
                      .+|+.+|.+||.++.+
T Consensus        85 s~e~~aL~aYi~~~s~  100 (111)
T d1h32a2          85 SPEFVALELYVASRGN  100 (111)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            4789999999998753

>d1iqca1 a.3.1.5 (A:1-150) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Nitrosomonas europaea [TaxId: 915]

Probab=93.37  E-value=0.049  Score=32.32  Aligned_cols=14  Identities=7%  Similarity=0.074  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHhhc
Q psy8407          77 PQERGDLIAYLEQA   90 (92)
Q Consensus        77 ~~d~~~liayL~sl   90 (92)
                      +.=.++|.+|.+||
T Consensus       136 ~~i~~ALaaferTL  149 (150)
T d1iqca1         136 DRITTAIAQFEETL  149 (150)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHc
Confidence            34456888898876

>d1h32a1 a.3.1.8 (A:1-150) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c SoxA
domain: Di-heme cytochrome c SoxA
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=91.15  E-value=0.015  Score=34.78  Aligned_cols=16  Identities=13%  Similarity=0.295  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHhhccC
Q psy8407          77 PQERGDLIAYLEQASK   92 (92)
Q Consensus        77 ~~d~~~liayL~sl~~   92 (92)
                      .+++.+|.+||.++.+
T Consensus       128 S~em~aL~aYi~~~S~  143 (150)
T d1h32a1         128 GPDMTAMVALIASVSR  143 (150)
T ss_dssp             SHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            4889999999998764

>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.03  E-value=0.046  Score=33.93  Aligned_cols=14  Identities=29%  Similarity=0.351  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHhhc
Q psy8407          77 PQERGDLIAYLEQA   90 (92)
Q Consensus        77 ~~d~~~liayL~sl   90 (92)
                      ++.+.||++||.-.
T Consensus       180 dq~~~Dl~nFL~y~  193 (195)
T d1ppjd1         180 SQVAKDVCTFLRWA  193 (195)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            67889999999754

>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.95  E-value=0.058  Score=33.61  Aligned_cols=14  Identities=21%  Similarity=0.328  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHhhc
Q psy8407          77 PQERGDLIAYLEQA   90 (92)
Q Consensus        77 ~~d~~~liayL~sl   90 (92)
                      +|.++||++||.-.
T Consensus       184 ~q~a~Dv~~FL~wa  197 (199)
T d3cx5d1         184 SQMAKDVTTFLNWC  197 (199)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            77889999999754