Psyllid ID: psy8420

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKTFK
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHcccccccHccHHHHHHHHHHccccccccccccccHHHHHccccHHHHHcHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccHccccc
Coil and Loop (DISEMBL)
MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVnyetpvdtfhtndvckfpcaATTKLLIRCgadvnakdyqgntplHIIATYERAISDFQTLHTIILDLtengahmdtvnnkgltpiqatTTGVADLILRTLTKINLKCLAAKVItqnnitykglvphDLESFIELHGTALDKTFK
Flexible Loop (DISEMBL)
MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIElhgtaldktfk
Low Complexity Region (SEG)
MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKTFK
Disordered region (IsUnstruct)
****LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTA******
Disordered Region (DISOPRED)
*EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTA******
Disordered Region (DISEMBL)
MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKTFK
Disordered Region (DISPRO)
MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTA******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKTFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q9Z2G0	627	Protein fem-1 homolog B O	yes	N/A	0.939	0.298	0.518	9e-49
Q5ZM55	627	Protein fem-1 homolog B O	yes	N/A	0.939	0.298	0.507	1e-48
Q6GPE5	629	Protein fem-1 homolog B O	N/A	N/A	0.939	0.297	0.518	1e-48
P0C6P7	627	Protein fem-1 homolog B O	yes	N/A	0.939	0.298	0.513	2e-48
Q9UK73	627	Protein fem-1 homolog B O	yes	N/A	0.939	0.298	0.507	8e-48
A1ZBY1	650	Protein fem-1 homolog B O	yes	N/A	0.929	0.284	0.406	3e-30
Q29RM5	653	Protein fem-1 homolog A O	no	N/A	0.854	0.260	0.335	5e-20
Q9BSK4	669	Protein fem-1 homolog A O	no	N/A	0.854	0.254	0.335	9e-20
Q6P9Z4	617	Protein fem-1 homolog A O	no	N/A	0.773	0.249	0.355	1e-19
Q8C0T1	654	Protein fem-1 homolog A-B	no	N/A	0.844	0.256	0.335	2e-19

>sp|Q9Z2G0|FEM1B_MOUSE Protein fem-1 homolog B OS=Mus musculus GN=Fem1b PE=1 SV=1

 Score =  192 bits (489), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 98/189 (51%), Positives = 128/189 (67%), Gaps = 2/189 (1%)

Query: 2   EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
           E NL T LYL+ I TK     SEE++ RI K +++L  L   +R+  SLLHL VN  TPV
Sbjct: 441 ECNLYTFLYLVCISTKT--QCSEEDQCRINKQIYNLIHLDPRTREGFSLLHLAVNSNTPV 498

Query: 62  DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
           D FHTNDVC FP A  TKLL+ CGA+VNA D +GN+ LHII  Y R ISDF TLH+II+ 
Sbjct: 499 DDFHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFLTLHSIIIS 558

Query: 122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
           L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  N+I Y+  +P 
Sbjct: 559 LVEAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPR 618

Query: 182 DLESFIELH 190
            LE F+  H
Sbjct: 619 TLEEFVGFH 627

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis. Also involved in glucose homeostasis in pancreatic islet. Functions as an adapter/mediator in replication stress-induced signaling that leads to the activation of CHEK1.
Mus musculus (taxid: 10090)

>sp|Q5ZM55|FEM1B_CHICK Protein fem-1 homolog B OS=Gallus gallus GN=FEM1B PE=2 SV=1

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 128/189 (67%), Gaps = 2/189 (1%)

Query: 2   EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
           E N+ T LYL+ I TK     SEE++ RI K +++L  L   +R   +LLH  VN  TPV
Sbjct: 441 ECNIFTFLYLVCISTKT--QCSEEDQSRINKQIYNLIHLDPRTRDGSTLLHHAVNSSTPV 498

Query: 62  DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
           D FHTNDVC FP A  TKLL+ CGADVNA D +GN+PLH+I  Y R ISDF TLH+II+ 
Sbjct: 499 DDFHTNDVCSFPNALVTKLLLDCGADVNAVDNEGNSPLHLIVQYHRPISDFLTLHSIIIS 558

Query: 122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
           L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +   NI+Y+  +P 
Sbjct: 559 LVEAGAHTDMTNKQKKTPLDKSTTGVSEILLKTQMKLSLKCLAARAVRIYNISYQNQIPR 618

Query: 182 DLESFIELH 190
            LE F++ H
Sbjct: 619 TLEEFVKFH 627

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis.

Gallus gallus (taxid: 9031)

>sp|Q6GPE5|FEM1B_XENLA Protein fem-1 homolog B OS=Xenopus laevis GN=fem1b PE=2 SV=1

 Score =  192 bits (488), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 98/189 (51%), Positives = 125/189 (66%), Gaps = 2/189 (1%)

Query: 2   EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
           E NL T LYL+ I TK     SEEE+  I K ++ L  L   +R+  SLLHL V+  TPV
Sbjct: 443 ECNLYTFLYLVCISTKTC--CSEEEQPCINKQIYRLVHLDPRTREGGSLLHLAVDSGTPV 500

Query: 62  DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
           D FHTNDVC FP A   KLLI CGA+VNA D  GN+PLH+I  Y R ISDF TLH II+ 
Sbjct: 501 DDFHTNDVCSFPSAPVAKLLIDCGANVNAVDQMGNSPLHVIVQYNRPISDFLTLHAIIIS 560

Query: 122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
           L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  +NI Y+  +P 
Sbjct: 561 LVEAGAHTDMTNKEKKTPLDRSTTGVSEILLKTQMKLSLKCLAARAVRLHNIKYQNQIPR 620

Query: 182 DLESFIELH 190
            LE F+E H
Sbjct: 621 TLEEFVEFH 629

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis.

Xenopus laevis (taxid: 8355)

>sp|P0C6P7|FEM1B_RAT Protein fem-1 homolog B OS=Rattus norvegicus GN=Fem1b PE=1 SV=1

 Score =  191 bits (486), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 128/189 (67%), Gaps = 2/189 (1%)

Query: 2   EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
           E NL T LYL+ I TK     SEE++ RI K +++L  L   +R+  +LLHL VN  TPV
Sbjct: 441 ECNLYTFLYLVCISTKT--QCSEEDQCRINKQIYNLIHLDPRTREGFTLLHLAVNSNTPV 498

Query: 62  DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
           D FHTNDVC FP A  TKLL+ CGA+VNA D +GN+ LHII  Y R ISDF TLH+II+ 
Sbjct: 499 DDFHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFLTLHSIIIS 558

Query: 122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
           L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  N+I Y+  +P 
Sbjct: 559 LVEAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPR 618

Query: 182 DLESFIELH 190
            LE F+  H
Sbjct: 619 TLEEFVGFH 627

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis. Also involved in glucose homeostasis in pancreatic islet (By similarity). Functions as an adapter/mediator in replication stress-induced signaling that leads to the activation of CHEK1.

Rattus norvegicus (taxid: 10116)

>sp|Q9UK73|FEM1B_HUMAN Protein fem-1 homolog B OS=Homo sapiens GN=FEM1B PE=1 SV=1

 Score =  189 bits (481), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 128/189 (67%), Gaps = 2/189 (1%)

Query: 2   EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
           E NL T LYL+ I TK     SEE++ +I K +++L  L   +R+  +LLHL VN  TPV
Sbjct: 441 ECNLYTFLYLVCISTKT--QCSEEDQCKINKQIYNLIHLDPRTREGFTLLHLAVNSNTPV 498

Query: 62  DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
           D FHTNDVC FP A  TKLL+ CGA+VNA D +GN+ LHII  Y R ISDF TLH+II+ 
Sbjct: 499 DDFHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFLTLHSIIIS 558

Query: 122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
           L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  N+I Y+  +P 
Sbjct: 559 LVEAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPR 618

Query: 182 DLESFIELH 190
            LE F+  H
Sbjct: 619 TLEEFVGFH 627

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis. Also involved in glucose homeostasis in pancreatic islet. Functions as an adapter/mediator in replication stress-induced signaling that leads to the activation of CHEK1.

Homo sapiens (taxid: 9606)

>sp|A1ZBY1|FEM1B_DROME Protein fem-1 homolog B OS=Drosophila melanogaster GN=Fem-1 PE=2 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 111/197 (56%), Gaps = 12/197 (6%)

Query: 4   NLVTSLYLLVILTKVIK-----NISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYE 58
           N +T+LYL+ I+T + +     NI EE   +++ +V    +     +  Q+LLH+ VN  
Sbjct: 449 NCITALYLIKIVTHLARRKKDQNIDEEHIQQLFLVVRKFIQNDTRLQDGQTLLHIAVNGV 508

Query: 59  TPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTI 118
            PVD F+TN++C+FPC AT  +L+ CGA V A D   NTPLHI+ T      D Q     
Sbjct: 509 MPVDEFYTNEMCRFPCYATALVLVHCGASVVAVDSDRNTPLHILVTKVNTTQDRQAEMAR 568

Query: 119 ILDL-TENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKIN----LKCLAAKVITQNNI 173
           IL+L  E GAH+D VN  G T   AT   +  L  R     N    LKCLAA+ I  N +
Sbjct: 569 ILELFVEAGAHLDAVNAAGQTA--ATACKLPILANRLHAHQNAHTSLKCLAARSIATNRL 626

Query: 174 TYKGLVPHDLESFIELH 190
            +KGL+P  LE+FI++H
Sbjct: 627 NFKGLIPTQLEAFIQMH 643

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Drosophila melanogaster (taxid: 7227)

>sp|Q29RM5|FEM1A_BOVIN Protein fem-1 homolog A OS=Bos taurus GN=FEM1A PE=2 SV=1

 Score = 97.4 bits (241), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 21/191 (10%)

Query: 5   LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTF 64
           L   L+LL +L KV    + ++E+  ++ V+ L K +   +   + LH+ V+ ET     
Sbjct: 479 LAIILHLLYLLEKV--ECTPDQEHLKHQTVYRLLKCAPRGKNGFTPLHMAVDAET----- 531

Query: 65  HTN----DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIIL 120
            TN     V +FP     K+L+ CGAD +++D+  NTPLHI A              I+ 
Sbjct: 532 -TNVGRYPVGRFPSLQVVKVLLDCGADPDSRDFDNNTPLHIAAQ--------NNCPGIMN 582

Query: 121 DLTENGAHMDTVNNKGLTPIQATTTGV-ADLILRTLTKINLKCLAAKVITQNNITYKGLV 179
            L E GAHMD  N    T  +     + A   ++    + L+CLAA+ + +N I YKG +
Sbjct: 583 ALIEAGAHMDATNAFKKTAYELLDEKLLAKSTIQPFNYVTLQCLAARALDKNKIPYKGFI 642

Query: 180 PHDLESFIELH 190
           P +LE+FIELH
Sbjct: 643 PEELEAFIELH 653

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. May participate in antiinflammatory signaling via its interaction with PTGER4.

Bos taurus (taxid: 9913)

>sp|Q9BSK4|FEM1A_HUMAN Protein fem-1 homolog A OS=Homo sapiens GN=FEM1A PE=1 SV=1

 Score = 96.7 bits (239), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 21/191 (10%)

Query: 5   LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTF 64
           L   L+LL +L KV    +  +E+  ++ V+ L K +   +   + LH+ V+ +T     
Sbjct: 495 LAIILHLLYLLEKV--ECTPSQEHLKHQTVYRLLKCAPRGKNGFTPLHMAVDKDT----- 547

Query: 65  HTN----DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIIL 120
            TN     V +FP     K+L+ CGAD +++D+  NTPLHI A              I+ 
Sbjct: 548 -TNVGRYPVGRFPSLHVVKVLLDCGADPDSRDFDNNTPLHIAAQ--------NNCPAIMN 598

Query: 121 DLTENGAHMDTVNNKGLTPIQATTTGV-ADLILRTLTKINLKCLAAKVITQNNITYKGLV 179
            L E GAHMD  N    T  +     + A   ++    + L+CLAA+ + +N I YKG +
Sbjct: 599 ALIEAGAHMDATNAFKKTAYELLDEKLLARGTMQPFNYVTLQCLAARALDKNKIPYKGFI 658

Query: 180 PHDLESFIELH 190
           P DLE+FIELH
Sbjct: 659 PEDLEAFIELH 669

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit (By similarity). May participate in antiinflammatory signaling via its interaction with PTGER4.

Homo sapiens (taxid: 9606)

>sp|Q6P9Z4|FEM1A_DANRE Protein fem-1 homolog A OS=Danio rerio GN=fem1a PE=2 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 87/169 (51%), Gaps = 15/169 (8%)

Query: 25  EEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRC 84
           E+E+   + V+ L KL+  +R   + LH+ V+ +T   +     V +FP  A   LL+ C
Sbjct: 461 EQEHLKRQTVYRLLKLNPRARGGHTPLHMAVDRDT--TSVGRYPVGRFPSLAVASLLLEC 518

Query: 85  GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ--- 141
           GADV+++DY  NTPLHI A              I+  L   GAH D  N    T  Q   
Sbjct: 519 GADVDSRDYDNNTPLHIAAA--------NGCPDIMAALIRAGAHFDATNAAQQTAYQLLE 570

Query: 142 ATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELH 190
           A ++G     L  L    L+CLAA+ +T + + YKGL+   +E+FIELH
Sbjct: 571 AQSSGRH--ALHPLNHTTLQCLAARAVTAHRLPYKGLISEQMEAFIELH 617

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Danio rerio (taxid: 7955)

>sp|Q8C0T1|FM1AB_MOUSE Protein fem-1 homolog A-B OS=Mus musculus GN=Fem1ab PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 17/185 (9%)

Query: 9   LYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETP-VDTFHTN 67
           L+LL +L KV    +  +E+  ++ V+ L K +   +   + LH+ V+ ET  V  +H  
Sbjct: 484 LHLLYLLEKV--ECTPRQEHLKHQTVYRLLKCAPRGKNGFTPLHMAVDKETTNVGQYH-- 539

Query: 68  DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENG 126
            V  FP     K+L+ CGAD +++D+  N+PLHI A         Q     I+D L E G
Sbjct: 540 -VGVFPSLQVVKVLLDCGADPDSRDFDNNSPLHIAA---------QNNCPAIMDALIEAG 589

Query: 127 AHMDTVNNKGLTPIQATTTGV-ADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLES 185
           AHMD  N    T  +   + + A   ++    + L+CLAA+ + +N + YKG +P +LE+
Sbjct: 590 AHMDATNTFKKTAYELLDSKLLAKSTVQPFNYVTLQCLAARALDRNKVPYKGFIPEELEA 649

Query: 186 FIELH 190
           FI+LH
Sbjct: 650 FIQLH 654

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. May participate in antiinflammatory signaling via its interaction with PTGER4.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
375493328	642	fem-1 homolog B-like protein [Locusta mi	0.984	0.305	0.637	3e-70
242012572	626	predicted protein [Pediculus humanus cor	0.984	0.313	0.588	9e-65
332030425	643	Protein fem-1-like protein B [Acromyrmex	0.989	0.306	0.595	2e-61
307178909	653	Protein fem-1-like protein B [Camponotus	0.989	0.301	0.606	2e-61
229577406	650	feminization 1-like [Nasonia vitripennis	0.984	0.301	0.595	7e-61
91087297	643	PREDICTED: similar to fem-1 homolog b [T	0.889	0.275	0.604	2e-59
383858022	655	PREDICTED: protein fem-1 homolog B-like	0.984	0.299	0.57	3e-59
270009534	644	hypothetical protein TcasGA2_TC008808 [T	0.889	0.274	0.601	4e-58
307211423	653	Protein fem-1-like protein B [Harpegnath	0.874	0.266	0.603	2e-55
350401891	655	PREDICTED: protein fem-1 homolog B-like	0.969	0.294	0.583	3e-54

>gi|375493328|dbj|BAL61212.1| fem-1 homolog B-like protein [Locusta migratoria manilensis]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 159/196 (81%)

Query: 1   MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETP 60
            E N+ T LY+LVI+TK++K  +++EE+R+  LV+ LNKL+VA+R+ ++LLHLCV+ ETP
Sbjct: 446 FESNITTVLYILVIITKLMKTCTKKEEFRVNSLVYRLNKLNVATREGKTLLHLCVDAETP 505

Query: 61  VDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIIL 120
           VD FHTNDVCKFPCA T KLLI+CGADVNA D   NTPLH+I +Y++ ISDF TLH II+
Sbjct: 506 VDDFHTNDVCKFPCATTAKLLIQCGADVNAMDCNRNTPLHVIVSYQKPISDFLTLHAIIM 565

Query: 121 DLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVP 180
           DLTE GAHMDTVNN G TP QA T+GVA++ILRT TK++LKC+AAK +   N+TY+G VP
Sbjct: 566 DLTEAGAHMDTVNNHGETPFQAATSGVAEIILRTQTKLSLKCMAAKAVKSFNLTYQGHVP 625

Query: 181 HDLESFIELHGTALDK 196
             LESFIELHG A+ +
Sbjct: 626 QSLESFIELHGPAVKQ 641

Source: Locusta migratoria manilensis

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012572|ref|XP_002427005.1| predicted protein [Pediculus humanus corporis] gi|212511243|gb|EEB14267.1| predicted protein [Pediculus humanus corporis]

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 116/197 (58%), Positives = 158/197 (80%), Gaps = 1/197 (0%)

Query: 1   MEDNLVTSLYLLVILTKVIK-NISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET 59
           ME+N+ + LY+LVI+TK++K NIS+ E++ I++L++ LNKL+V +R+ QSLLHL VN++T
Sbjct: 429 MENNIYSVLYILVIVTKLMKKNISKLEKFEIHQLLYKLNKLNVTTREGQSLLHLSVNFQT 488

Query: 60  PVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTII 119
           PVD FHTN VCKFPCA   +LL+RCGADVN+ D + NTPLHII +Y++ +SDF TLH+II
Sbjct: 489 PVDDFHTNHVCKFPCADVARLLMRCGADVNSMDNERNTPLHIIVSYQKPVSDFMTLHSII 548

Query: 120 LDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLV 179
           + L E GAHMDTVN+ G TP  A TTGVA +IL+T +KI+LKC+AA+V+   ++ Y+G V
Sbjct: 549 IRLIEAGAHMDTVNSSGKTPFDAATTGVASIILQTQSKISLKCMAARVVKNYDLAYQGQV 608

Query: 180 PHDLESFIELHGTALDK 196
           P  LESFIELHG  L++
Sbjct: 609 PKSLESFIELHGPGLNQ 625

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030425|gb|EGI70113.1| Protein fem-1-like protein B [Acromyrmex echinatior]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/200 (59%), Positives = 147/200 (73%), Gaps = 3/200 (1%)

Query: 1   MEDNLVTSLYLLVILTKVI---KNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNY 57
           ME N+ T+LY+L ILTK++    N  E +  + + LV  L  L V  +  Q+LLHL VN 
Sbjct: 444 MESNITTTLYILTILTKLMTLNGNSDESDLTQAHHLVHKLCALKVCLKDGQTLLHLAVNA 503

Query: 58  ETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT 117
           ETPVD FHTNDVCKFPCAAT +LLIRCGAD+NA D + NTPLH+I  Y +AISDF TLH+
Sbjct: 504 ETPVDDFHTNDVCKFPCAATARLLIRCGADINAMDNERNTPLHVIVGYSKAISDFATLHS 563

Query: 118 IILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKG 177
           II+DL E GAHMDTVNN+G TP  A TTGVA +ILRT TK++L C+AAK I   ++ Y+G
Sbjct: 564 IIIDLIEAGAHMDTVNNRGHTPYDAVTTGVAKIILRTRTKLSLTCMAAKAIKTYDLPYRG 623

Query: 178 LVPHDLESFIELHGTALDKT 197
            VP  LESFIELHG  L+++
Sbjct: 624 NVPRSLESFIELHGPGLNQS 643

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178909|gb|EFN67437.1| Protein fem-1-like protein B [Camponotus floridanus]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/201 (60%), Positives = 146/201 (72%), Gaps = 4/201 (1%)

Query: 1   MEDNLVTSLYLLVILTKVI---KNISEEEEYR-IYKLVFSLNKLSVASRQNQSLLHLCVN 56
           ME N+ T+LY+L ILTK++    N  +E + R  Y LV  L  L +  +  Q+LLHL VN
Sbjct: 453 MESNITTTLYILTILTKLMTLNGNRCDESDLRQAYHLVHKLCALQMCLKDGQTLLHLAVN 512

Query: 57  YETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLH 116
            ETPVD FHTNDVCKFPCAAT KLLIRCGADVNA D + NTPLH+I +Y +AISDF TLH
Sbjct: 513 AETPVDDFHTNDVCKFPCAATAKLLIRCGADVNAMDNERNTPLHVIVSYNKAISDFATLH 572

Query: 117 TIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYK 176
           +II+DL E GAHMDTVNN G TP    TTGVA +ILRT TK++L C+AAK I   N+ Y 
Sbjct: 573 SIIIDLIEAGAHMDTVNNGGRTPYDVVTTGVAKIILRTQTKLSLTCMAAKAIKAYNLPYY 632

Query: 177 GLVPHDLESFIELHGTALDKT 197
           G VP  LESFIELHG  L+++
Sbjct: 633 GHVPRSLESFIELHGPGLNQS 653

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229577406|ref|NP_001153369.1| feminization 1-like [Nasonia vitripennis]

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 119/200 (59%), Positives = 146/200 (73%), Gaps = 4/200 (2%)

Query: 1   MEDNLVTSLYLLVILTKVI----KNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVN 56
           +E N+  +LY+L ILTK++    K   E +  R + LV  L  L V  +  Q+LLHL VN
Sbjct: 450 IESNITITLYILTILTKLMTLNEKGYDETDIKRAHHLVHKLCALQVTLKDGQTLLHLAVN 509

Query: 57  YETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLH 116
            +TPVD FHTNDVCKFPCAAT KLLI+CGADVNA D + NTPLH+I  YE+ ISDF TLH
Sbjct: 510 ADTPVDDFHTNDVCKFPCAATAKLLIQCGADVNAMDNERNTPLHVIVQYEKPISDFMTLH 569

Query: 117 TIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYK 176
           +IILDL E GAHMDTVN++G TP  A TTGVA++ILRT TK++LKC+AAK +   N+ Y 
Sbjct: 570 SIILDLVEAGAHMDTVNSQGKTPFDAATTGVAEIILRTQTKLSLKCMAAKAVKAYNLLYC 629

Query: 177 GLVPHDLESFIELHGTALDK 196
           G VP  LESFIELHG  L++
Sbjct: 630 GNVPRSLESFIELHGPGLNQ 649

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087297|ref|XP_975561.1| PREDICTED: similar to fem-1 homolog b [Tribolium castaneum]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/177 (60%), Positives = 136/177 (76%)

Query: 20  KNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTK 79
           K  SEEE + + ++VF+LN+L+V  R  Q+LLHL  N ETPVD FHTNDVCKFPCA TT+
Sbjct: 465 KECSEEERFNVNRMVFTLNQLNVTLRDGQTLLHLACNAETPVDDFHTNDVCKFPCAETTR 524

Query: 80  LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
           LLI+CGADVNA DY  NTPLH+I  Y + ISDF TLH+II DLTE GAH+D VN +G TP
Sbjct: 525 LLIKCGADVNAMDYDRNTPLHVIVNYHKPISDFLTLHSIITDLTEAGAHLDCVNKRGETP 584

Query: 140 IQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDK 196
           ++A+ TGVA++IL+T  K++LKC+AA  +  + +TY+G VP  LESFIELHG  + K
Sbjct: 585 LEASATGVAEIILKTQMKLSLKCIAANAVKHHKLTYQGQVPEALESFIELHGPGIVK 641

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858022|ref|XP_003704502.1| PREDICTED: protein fem-1 homolog B-like [Megachile rotundata]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/200 (57%), Positives = 148/200 (74%), Gaps = 4/200 (2%)

Query: 1   MEDNLVTSLYLLVILTKVI----KNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVN 56
           ME N++++LY+L ILT+++        E+++ +  +LV  L  L +  +  Q+LLHL VN
Sbjct: 455 MESNILSTLYILTILTRLLTSNGSRYEEQDKNKACRLVHKLCALQLRLKDGQTLLHLAVN 514

Query: 57  YETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLH 116
            ETPVD FHTNDVCKFPCAAT KLLI+CGADVNA D + NTPLHII +Y + IS+F TLH
Sbjct: 515 AETPVDDFHTNDVCKFPCAATAKLLIQCGADVNAMDNERNTPLHIIVSYRKPISNFMTLH 574

Query: 117 TIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYK 176
           +II++L E GAHMDTVN+ G TP  A + GV +LILRT TK++LKC+AAKVI   N++Y 
Sbjct: 575 SIIMELIEAGAHMDTVNSSGKTPYDAVSKGVVELILRTQTKLSLKCIAAKVIKAYNLSYC 634

Query: 177 GLVPHDLESFIELHGTALDK 196
           G VP  LESFIELHG  L++
Sbjct: 635 GHVPRSLESFIELHGPGLNQ 654

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009534|gb|EFA05982.1| hypothetical protein TcasGA2_TC008808 [Tribolium castaneum]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 136/178 (76%), Gaps = 1/178 (0%)

Query: 20  KNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTK 79
           K  SEEE + + ++VF+LN+L+V  R  Q+LLHL  N ETPVD FHTNDVCKFPCA TT+
Sbjct: 465 KECSEEERFNVNRMVFTLNQLNVTLRDGQTLLHLACNAETPVDDFHTNDVCKFPCAETTR 524

Query: 80  LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
           LLI+CGADVNA DY  NTPLH+I  Y + ISDF TLH+II DLTE GAH+D VN +G TP
Sbjct: 525 LLIKCGADVNAMDYDRNTPLHVIVNYHKPISDFLTLHSIITDLTEAGAHLDCVNKRGETP 584

Query: 140 IQATTTG-VADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDK 196
           ++A+ TG VA++IL+T  K++LKC+AA  +  + +TY+G VP  LESFIELHG  + K
Sbjct: 585 LEASATGSVAEIILKTQMKLSLKCIAANAVKHHKLTYQGQVPEALESFIELHGPGIVK 642

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211423|gb|EFN87550.1| Protein fem-1-like protein B [Harpegnathos saltator]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/174 (60%), Positives = 131/174 (75%)

Query: 23  SEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI 82
           +E +  + + LV  L  L +  +  Q+LLHL VN ETPVD FHTNDVCKFPCAAT KLLI
Sbjct: 479 NESDLTKAHHLVHKLCALRICLKDGQTLLHLAVNAETPVDDFHTNDVCKFPCAATAKLLI 538

Query: 83  RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142
           RCGADVNA D + NTPLHII  Y ++ISDF TLH+II++L E GAHMDTVNN+G TP  A
Sbjct: 539 RCGADVNAMDNERNTPLHIIVGYSKSISDFSTLHSIIMELIEAGAHMDTVNNRGHTPYDA 598

Query: 143 TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDK 196
            TTGVA++ILR+ TK++L C+AAK +   N++Y G VP  LE+FIELHG  L++
Sbjct: 599 VTTGVAEIILRSQTKLSLMCMAAKAVKAYNLSYTGNVPRCLETFIELHGPGLNQ 652

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401891|ref|XP_003486298.1| PREDICTED: protein fem-1 homolog B-like [Bombus impatiens]

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 142/197 (72%), Gaps = 4/197 (2%)

Query: 1   MEDNLVTSLYLLVILTKVI----KNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVN 56
           ME N+ T+LY+L ILTK++        E+++ + Y+LV  L  L +  +  Q+LLHL VN
Sbjct: 455 MESNITTTLYILTILTKLLTLNESKYEEQDKNKAYQLVHKLCALQLRLKDGQTLLHLAVN 514

Query: 57  YETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLH 116
             T VD FHTN VCKFPCAATTKLLI CGADVNA D + NTPLHII +Y   +SDF TLH
Sbjct: 515 AATLVDDFHTNHVCKFPCAATTKLLICCGADVNAMDNERNTPLHIIVSYREPVSDFMTLH 574

Query: 117 TIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYK 176
           +II+DL E GAHMDTVN+ G TP  A  TGVA++ILRT TK++LKC+AAKV+   N++Y 
Sbjct: 575 SIIMDLIEAGAHMDTVNSNGKTPYDAVATGVAEIILRTQTKLSLKCMAAKVVNTYNLSYY 634

Query: 177 GLVPHDLESFIELHGTA 193
           G VP  LESFIELHG  
Sbjct: 635 GNVPRSLESFIELHGPG 651

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
MGI|MGI:1335087	627	Fem1b "feminization 1 homolog	0.939	0.298	0.518	2.6e-47
UNIPROTKB|F1NZR5	535	F1NZR5 "Uncharacterized protei	0.939	0.349	0.507	4.2e-47
UNIPROTKB|Q5ZM55	627	FEM1B "Protein fem-1 homolog B	0.939	0.298	0.507	4.2e-47
RGD|1304569	627	Fem1b "fem-1 homolog b (C. ele	0.939	0.298	0.513	5.4e-47
UNIPROTKB|F1N162	627	FEM1B "Uncharacterized protein	0.939	0.298	0.507	1.1e-46
UNIPROTKB|E2REP8	627	FEM1B "Uncharacterized protein	0.939	0.298	0.507	1.1e-46
UNIPROTKB|Q9UK73	627	FEM1B "Protein fem-1 homolog B	0.939	0.298	0.507	1.1e-46
UNIPROTKB|I3L6T4	627	FEM1B "Uncharacterized protein	0.939	0.298	0.507	1.1e-46
UNIPROTKB|Q6GPE5	629	fem1b "Protein fem-1 homolog B	0.939	0.297	0.518	1.4e-46
FB|FBgn0034542	650	Fem-1 "Fem-1" [Drosophila mela	0.939	0.287	0.4	3.9e-30

MGI|MGI:1335087 Fem1b "feminization 1 homolog b (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 98/189 (51%), Positives = 128/189 (67%)

Query:     2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
             E NL T LYL+ I TK     SEE++ RI K +++L  L   +R+  SLLHL VN  TPV
Sbjct:   441 ECNLYTFLYLVCISTKT--QCSEEDQCRINKQIYNLIHLDPRTREGFSLLHLAVNSNTPV 498

Query:    62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
             D FHTNDVC FP A  TKLL+ CGA+VNA D +GN+ LHII  Y R ISDF TLH+II+ 
Sbjct:   499 DDFHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFLTLHSIIIS 558

Query:   122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
             L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  N+I Y+  +P 
Sbjct:   559 LVEAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPR 618

Query:   182 DLESFIELH 190
              LE F+  H
Sbjct:   619 TLEEFVGFH 627

GO:0002070 "epithelial cell maturation" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005123 "death receptor binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=ISO

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IMP

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IMP

GO:2000001 "regulation of DNA damage checkpoint" evidence=ISO

UNIPROTKB|F1NZR5 F1NZR5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 96/189 (50%), Positives = 128/189 (67%)

Query:     2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
             E N+ T LYL+ I TK     SEE++ RI K +++L  L   +R   +LLH  VN  TPV
Sbjct:   349 ECNIFTFLYLVCISTKT--QCSEEDQSRINKQIYNLIHLDPRTRDGSTLLHHAVNSSTPV 406

Query:    62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
             D FHTNDVC FP A  TKLL+ CGADVNA D +GN+PLH+I  Y R ISDF TLH+II+ 
Sbjct:   407 DDFHTNDVCSFPNALVTKLLLDCGADVNAVDNEGNSPLHLIVQYHRPISDFLTLHSIIIS 466

Query:   122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
             L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +   NI+Y+  +P 
Sbjct:   467 LVEAGAHTDMTNKQKKTPLDKSTTGVSEILLKTQMKLSLKCLAARAVRIYNISYQNQIPR 526

Query:   182 DLESFIELH 190
              LE F++ H
Sbjct:   527 TLEEFVKFH 535

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

UNIPROTKB|Q5ZM55 FEM1B "Protein fem-1 homolog B" [Gallus gallus (taxid:9031)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 96/189 (50%), Positives = 128/189 (67%)

Query:     2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
             E N+ T LYL+ I TK     SEE++ RI K +++L  L   +R   +LLH  VN  TPV
Sbjct:   441 ECNIFTFLYLVCISTKT--QCSEEDQSRINKQIYNLIHLDPRTRDGSTLLHHAVNSSTPV 498

Query:    62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
             D FHTNDVC FP A  TKLL+ CGADVNA D +GN+PLH+I  Y R ISDF TLH+II+ 
Sbjct:   499 DDFHTNDVCSFPNALVTKLLLDCGADVNAVDNEGNSPLHLIVQYHRPISDFLTLHSIIIS 558

Query:   122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
             L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +   NI+Y+  +P 
Sbjct:   559 LVEAGAHTDMTNKQKKTPLDKSTTGVSEILLKTQMKLSLKCLAARAVRIYNISYQNQIPR 618

Query:   182 DLESFIELH 190
              LE F++ H
Sbjct:   619 TLEEFVKFH 627

GO:0006915 "apoptotic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:2000001 "regulation of DNA damage checkpoint" evidence=ISS

RGD|1304569 Fem1b "fem-1 homolog b (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 97/189 (51%), Positives = 128/189 (67%)

Query:     2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
             E NL T LYL+ I TK     SEE++ RI K +++L  L   +R+  +LLHL VN  TPV
Sbjct:   441 ECNLYTFLYLVCISTKT--QCSEEDQCRINKQIYNLIHLDPRTREGFTLLHLAVNSNTPV 498

Query:    62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
             D FHTNDVC FP A  TKLL+ CGA+VNA D +GN+ LHII  Y R ISDF TLH+II+ 
Sbjct:   499 DDFHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFLTLHSIIIS 558

Query:   122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
             L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  N+I Y+  +P 
Sbjct:   559 LVEAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPR 618

Query:   182 DLESFIELH 190
              LE F+  H
Sbjct:   619 TLEEFVGFH 627

GO:0002070 "epithelial cell maturation" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005123 "death receptor binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA;ISO

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA;ISO

GO:2000001 "regulation of DNA damage checkpoint" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1N162 FEM1B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 96/189 (50%), Positives = 128/189 (67%)

Query:     2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
             E NL T LYL+ I TK     SEE++ +I K +++L  L   +R+  +LLHL VN  TPV
Sbjct:   441 ECNLYTFLYLVCISTKT--QCSEEDQCKINKQIYNLIHLDPRTREGFTLLHLAVNSNTPV 498

Query:    62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
             D FHTNDVC FP A  TKLL+ CGA+VNA D +GN+ LHII  Y R ISDF TLH+II+ 
Sbjct:   499 DDFHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFLTLHSIIIS 558

Query:   122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
             L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  N+I Y+  +P 
Sbjct:   559 LVEAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPR 618

Query:   182 DLESFIELH 190
              LE F+  H
Sbjct:   619 TLEEFVGFH 627

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E2REP8 FEM1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 96/189 (50%), Positives = 128/189 (67%)

Query:     2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
             E NL T LYL+ I TK     SEE++ +I K +++L  L   +R+  +LLHL VN  TPV
Sbjct:   441 ECNLYTFLYLVCISTKT--QCSEEDQCKINKQIYNLIHLDPRTREGFTLLHLAVNSNTPV 498

Query:    62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
             D FHTNDVC FP A  TKLL+ CGA+VNA D +GN+ LHII  Y R ISDF TLH+II+ 
Sbjct:   499 DDFHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFLTLHSIIIS 558

Query:   122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
             L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  N+I Y+  +P 
Sbjct:   559 LVEAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPR 618

Query:   182 DLESFIELH 190
              LE F+  H
Sbjct:   619 TLEEFVGFH 627

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q9UK73 FEM1B "Protein fem-1 homolog B" [Homo sapiens (taxid:9606)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 96/189 (50%), Positives = 128/189 (67%)

Query:     2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
             E NL T LYL+ I TK     SEE++ +I K +++L  L   +R+  +LLHL VN  TPV
Sbjct:   441 ECNLYTFLYLVCISTKT--QCSEEDQCKINKQIYNLIHLDPRTREGFTLLHLAVNSNTPV 498

Query:    62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
             D FHTNDVC FP A  TKLL+ CGA+VNA D +GN+ LHII  Y R ISDF TLH+II+ 
Sbjct:   499 DDFHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFLTLHSIIIS 558

Query:   122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
             L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  N+I Y+  +P 
Sbjct:   559 LVEAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPR 618

Query:   182 DLESFIELH 190
              LE F+  H
Sbjct:   619 TLEEFVGFH 627

GO:0006915 "apoptotic process" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0005123 "death receptor binding" evidence=IMP;NAS

GO:0006917 "induction of apoptosis" evidence=NAS

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:2000001 "regulation of DNA damage checkpoint" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3L6T4 FEM1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 96/189 (50%), Positives = 128/189 (67%)

Query:     2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
             E NL T LYL+ I TK     SEE++ +I K +++L  L   +R+  +LLHL VN  TPV
Sbjct:   441 ECNLYTFLYLVCISTKT--QCSEEDQCKINKQIYNLIHLDPRTREGFTLLHLAVNSNTPV 498

Query:    62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
             D FHTNDVC FP A  TKLL+ CGA+VNA D +GN+ LHII  Y R ISDF TLH+II+ 
Sbjct:   499 DDFHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFLTLHSIIIS 558

Query:   122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
             L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  N+I Y+  +P 
Sbjct:   559 LVEAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPR 618

Query:   182 DLESFIELH 190
              LE F+  H
Sbjct:   619 TLEEFVGFH 627

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q6GPE5 fem1b "Protein fem-1 homolog B" [Xenopus laevis (taxid:8355)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 98/189 (51%), Positives = 125/189 (66%)

Query:     2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPV 61
             E NL T LYL+ I TK     SEEE+  I K ++ L  L   +R+  SLLHL V+  TPV
Sbjct:   443 ECNLYTFLYLVCISTKTC--CSEEEQPCINKQIYRLVHLDPRTREGGSLLHLAVDSGTPV 500

Query:    62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
             D FHTNDVC FP A   KLLI CGA+VNA D  GN+PLH+I  Y R ISDF TLH II+ 
Sbjct:   501 DDFHTNDVCSFPSAPVAKLLIDCGANVNAVDQMGNSPLHVIVQYNRPISDFLTLHAIIIS 560

Query:   122 LTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
             L E GAH D  N +  TP+  +TTGV++++L+T  K++LKCLAA+ +  +NI Y+  +P 
Sbjct:   561 LVEAGAHTDMTNKEKKTPLDRSTTGVSEILLKTQMKLSLKCLAARAVRLHNIKYQNQIPR 620

Query:   182 DLESFIELH 190
              LE F+E H
Sbjct:   621 TLEEFVEFH 629

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:2000001 "regulation of DNA damage checkpoint" evidence=ISS

FB|FBgn0034542 Fem-1 "Fem-1" [Drosophila melanogaster (taxid:7227)]

 Score = 340 (124.7 bits), Expect = 3.9e-30, P = 3.9e-30
 Identities = 78/195 (40%), Positives = 111/195 (56%)

Query:     4 NLVTSLYLLVILTKVIK-----NISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYE 58
             N +T+LYL+ I+T + +     NI EE   +++ +V    +     +  Q+LLH+ VN  
Sbjct:   449 NCITALYLIKIVTHLARRKKDQNIDEEHIQQLFLVVRKFIQNDTRLQDGQTLLHIAVNGV 508

Query:    59 TPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTI 118
              PVD F+TN++C+FPC AT  +L+ CGA V A D   NTPLHI+ T      D Q     
Sbjct:   509 MPVDEFYTNEMCRFPCYATALVLVHCGASVVAVDSDRNTPLHILVTKVNTTQDRQAEMAR 568

Query:   119 ILDL-TENGAHMDTVNNKGLTPIQATTTGV-AD-LILRTLTKINLKCLAAKVITQNNITY 175
             IL+L  E GAH+D VN  G T   A    + A+ L        +LKCLAA+ I  N + +
Sbjct:   569 ILELFVEAGAHLDAVNAAGQTAATACKLPILANRLHAHQNAHTSLKCLAARSIATNRLNF 628

Query:   176 KGLVPHDLESFIELH 190
             KGL+P  LE+FI++H
Sbjct:   629 KGLIPTQLEAFIQMH 643

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C6P7	FEM1B_RAT	No assigned EC number	0.5132	0.9396	0.2982	yes	N/A
Q9Z2G0	FEM1B_MOUSE	No assigned EC number	0.5185	0.9396	0.2982	yes	N/A
Q5ZM55	FEM1B_CHICK	No assigned EC number	0.5079	0.9396	0.2982	yes	N/A
Q9UK73	FEM1B_HUMAN	No assigned EC number	0.5079	0.9396	0.2982	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	199
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	6e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.001
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.003
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.004
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           KLL+  GADVNA+D  GNTPLH+ A              ++  L ++GA ++  +  G T
Sbjct: 57  KLLLEKGADVNARDKDGNTPLHLAARNGN--------LDVVKLLLKHGADVNARDKDGRT 108

Query: 139 PI 140
           P+
Sbjct: 109 PL 110

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 14/110 (12%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           KLLI+ GADVNAKD  G TPLH+  +      + + +  ++      GA ++ ++  G+T
Sbjct: 101 KLLIKAGADVNAKDKVGRTPLHVYLSGFNI--NPKVIRLLL----RKGADVNALDLYGMT 154

Query: 139 PIQATT--TGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESF 186
           P+            +LR L        A   +   +  ++ L+ H L+SF
Sbjct: 155 PLAVLLKSRNANVELLRLL------IDAGADVYAVDDRFRSLLHHHLQSF 198

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           + LIR G D  A D  GNTPLH +AT            +++L L   G  ++  N  G T
Sbjct: 206 RELIRAGCDPAATDMLGNTPLHSMATGSSC------KRSLVLPLLIAGISINARNRYGQT 259

Query: 139 PI 140
           P+
Sbjct: 260 PL 261

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 40  LSVASRQNQ-SLLHLCVNYETPVDTFHTNDV----CKFPCAATTKLLIRCGADVNAKDYQ 94
           L +A++     L+ L +     V+   T+       +       KLL+  GADVNAKD  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 95  GNTPLHIIATYER 107
           GNT LH+ A    
Sbjct: 61  GNTALHLAARNGN 73

Length = 91

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           KL I  GA+VN  D + +TPL  I +    I D++ +  I+  L ENGA ++  N+ G T
Sbjct: 55  KLFINLGANVNGLDNEYSTPLCTILS---NIKDYKHMLDIVKILIENGADINKKNSDGET 111

Query: 139 PI 140
           P+
Sbjct: 112 PL 113

Length = 489

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           KLL+  GA  N KD  G +PLH  A Y     D+  +  +I    ++G H+      G T
Sbjct: 174 KLLLEKGAYANVKDNNGESPLHNAAEY----GDYACIKLLI----DHGNHIMNKCKNGFT 225

Query: 139 PIQ 141
           P+ 
Sbjct: 226 PLH 228

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           K+L   GADVN +D  G  P+HI   +            II  L E GA+ +  +N G +
Sbjct: 141 KMLFEYGADVNIEDDNGCYPIHIAIKH--------NFFDIIKLLLEKGAYANVKDNNGES 192

Query: 139 PIQ 141
           P+ 
Sbjct: 193 PLH 195

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 73  PCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
                 + L+  GADVN +   G TPLH    Y       + +  I+  L E GA ++  
Sbjct: 25  VTVEEVRRLLAAGADVNFRGEYGKTPLH---LYLH--YSSEKVKDIVRLLLEAGADVNAP 79

Query: 133 NNKGLTPIQ-----ATTTGVADLILRTLTKINLKC 162
              G TP+      ATT  V  L+++    +N K 
Sbjct: 80  ERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD 114

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           ++L+  GAD N +DY G TPLHI                ++  L E GA    ++  G T
Sbjct: 99  RILLTGGADPNCRDYDGRTPLHIACANGHV--------QVVRVLLEFGADPTLLDKDGKT 150

Query: 139 PIQ 141
           P++
Sbjct: 151 PLE 153

Length = 664

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 64  FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLT 123
              +           KLL+  GADVNAKD  G+TPLH+ A      +  +    +   L 
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAA---LNGNPPEGNIEVAKLLL 131

Query: 124 ENGAHMDTV---NNKGLTPIQ 141
           E GA +D     +  G TP+ 
Sbjct: 132 EAGADLDVNNLRDEDGNTPLH 152

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYER 107
           KLL++ GADVNA+D  G TPLH+ A    
Sbjct: 90  KLLLKHGADVNARDKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           KLL+  GA+VNA D  G TPL    + +          +I+  L +NGA+++  N+ G  
Sbjct: 90  KLLLEYGANVNAPDNNGITPLLYAISKKSNSY------SIVEYLLDNGANVNIKNSDGEN 143

Query: 139 PIQATTTG------VADLILRTLTKINLKC 162
            +            +  L++     IN K 
Sbjct: 144 LLHLYLESNKIDLKILKLLIDKGVDINAKN 173

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG4412|consensus	226		99.95
KOG4412|consensus	226		99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.9
PHA02791	284	ankyrin-like protein; Provisional	99.89
KOG0509|consensus	600		99.88
PHA02878	477	ankyrin repeat protein; Provisional	99.88
PHA02791	284	ankyrin-like protein; Provisional	99.88
KOG0508|consensus	615		99.88
PHA02946	446	ankyin-like protein; Provisional	99.87
PHA02859	209	ankyrin repeat protein; Provisional	99.86
PHA03100	480	ankyrin repeat protein; Provisional	99.86
PHA03100	480	ankyrin repeat protein; Provisional	99.85
PHA02859	209	ankyrin repeat protein; Provisional	99.85
PHA02874	434	ankyrin repeat protein; Provisional	99.85
PHA02874	434	ankyrin repeat protein; Provisional	99.84
KOG0510|consensus	929		99.84
PHA03095	471	ankyrin-like protein; Provisional	99.84
PHA02878	477	ankyrin repeat protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02875	413	ankyrin repeat protein; Provisional	99.84
KOG0195|consensus	448		99.83
PHA03095	471	ankyrin-like protein; Provisional	99.83
KOG0509|consensus	600		99.83
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.83
PHA02876	682	ankyrin repeat protein; Provisional	99.83
PHA02795	437	ankyrin-like protein; Provisional	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.82
PHA02798	489	ankyrin-like protein; Provisional	99.82
PHA02989	494	ankyrin repeat protein; Provisional	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.81
PHA02876	682	ankyrin repeat protein; Provisional	99.8
PHA02946	446	ankyin-like protein; Provisional	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.8
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.8
KOG0502|consensus	296		99.8
KOG0514|consensus	452		99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.78
PHA02989	494	ankyrin repeat protein; Provisional	99.78
KOG4177|consensus	1143		99.77
PHA02798	489	ankyrin-like protein; Provisional	99.77
KOG0510|consensus	929		99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
KOG0508|consensus	615		99.75
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.75
PHA02917	661	ankyrin-like protein; Provisional	99.75
KOG0512|consensus	228		99.75
KOG0512|consensus	228		99.74
PHA02730	672	ankyrin-like protein; Provisional	99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.71
PHA02730	672	ankyrin-like protein; Provisional	99.7
KOG0505|consensus	527		99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
PHA02884	300	ankyrin repeat protein; Provisional	99.67
PHA02741	169	hypothetical protein; Provisional	99.67
KOG3676|consensus	782		99.67
KOG4177|consensus	1143		99.67
KOG0502|consensus	296		99.66
KOG4214|consensus	117		99.66
PHA02792	631	ankyrin-like protein; Provisional	99.66
PHA02795	437	ankyrin-like protein; Provisional	99.64
PHA02792	631	ankyrin-like protein; Provisional	99.62
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.61
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.6
KOG0195|consensus	448		99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.55
KOG0507|consensus	854		99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
KOG0507|consensus	854		99.44
KOG0514|consensus	452		99.44
KOG0515|consensus	752		99.44
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.44
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.43
KOG4214|consensus	117		99.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
KOG3676|consensus	782		99.37
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
KOG0505|consensus	527		99.36
KOG1710|consensus	396		99.25
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.25
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.21
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.17
KOG4369|consensus	2131		99.16
KOG1710|consensus	396		99.1
KOG4369|consensus	2131		98.97
KOG0515|consensus	752		98.93
KOG0783|consensus	1267		98.85
KOG0783|consensus	1267		98.79
PF13606	30	Ank_3: Ankyrin repeat	98.76
KOG0506|consensus	622		98.73
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.72
KOG0818|consensus	669		98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.64
PF13606	30	Ank_3: Ankyrin repeat	98.64
KOG0522|consensus	560		98.55
KOG0705|consensus	749		98.53
KOG0818|consensus	669		98.52
KOG0705|consensus	749		98.45
KOG0511|consensus	516		98.29
KOG0782|consensus	1004		98.28
KOG0521|consensus	785		98.27
KOG0521|consensus	785		98.26
KOG0782|consensus	1004		98.25
KOG2384|consensus	223		98.14
KOG0506|consensus	622		98.13
KOG0522|consensus	560		98.12
KOG0511|consensus	516		97.9
KOG0520|consensus	975		97.82
KOG2505|consensus	591		97.6
KOG2384|consensus	223		97.48
KOG3609|consensus	822		96.73
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.72
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.52
KOG3609|consensus	822		96.47
KOG2505|consensus	591		96.45
KOG0520|consensus	975		96.04
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.4
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.34

>KOG4412|consensus

Probab=99.95  E-value=5e-28  Score=173.24  Aligned_cols=142  Identities=23%  Similarity=0.244  Sum_probs=127.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHH-cCCCcccccCCCchHHHHHHhcCC-CC------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVF-SLNKLSVASRQNQSLLHLCVNYET-PV------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~-~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------   61 (199)
                      |..|+||||+||..|+         .++++.|++ .+..+|.+|..|.||||.|+..|+ ++                  
T Consensus        35 dqD~Rt~LHwa~S~g~---------~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~  105 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGH---------VEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNG  105 (226)
T ss_pred             cccCCceeeeeeecCc---------hhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCC
Confidence            3579999999999999         999999995 689999999999999999999998 54                  


Q ss_pred             CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccc
Q psy8420          62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ  141 (199)
Q Consensus        62 ~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  141 (199)
                      |.+++|+|+..+..+++++|+++|+.++.+|..|.||||-|+..|..        +++++|+.+|+.+|..|..|+||||
T Consensus       106 G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGkl--------kvie~Li~~~a~~n~qDk~G~TpL~  177 (226)
T KOG4412|consen  106 GQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKL--------KVIEYLISQGAPLNTQDKYGFTPLH  177 (226)
T ss_pred             CcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccch--------hhHHHHHhcCCCCCcccccCccHHH
Confidence            78999999999999999999999999999999999999999999999        9999999999999999999999999


Q ss_pred             c----ccchHHHHHHhhcccchh
Q psy8420         142 A----TTTGVADLILRTLTKINL  160 (199)
Q Consensus       142 ~----~~~~~~~~ll~~~~~~~~  160 (199)
                      .    ...+....|++.+++...
T Consensus       178 ~al~e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  178 HALAEGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             HHHhccCchHHHHHHHhccceee
Confidence            8    334456667777655443

>KOG4412|consensus

Probab=99.93  E-value=6.6e-26  Score=162.37  Aligned_cols=133  Identities=18%  Similarity=0.214  Sum_probs=122.2

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCC-CC-----------------
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYET-PV-----------------   61 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------   61 (199)
                      .|..||||||+||..|+         .++|+.|+.+ |+++|..+..|.|+||+|+..|+ +|                 
T Consensus        68 kDdaGWtPlhia~s~g~---------~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~  138 (226)
T KOG4412|consen   68 KDDAGWTPLHIAASNGN---------DEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQ  138 (226)
T ss_pred             ccccCCchhhhhhhcCc---------HHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccc
Confidence            36789999999999999         9999999998 99999999999999999999988 55                 


Q ss_pred             CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccc
Q psy8420          62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ  141 (199)
Q Consensus        62 ~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  141 (199)
                      +.+|+|.|+.-|..+++++|+..|+.+|.+|+.|+||||.|...++.        +..-+|+++|++....|++| ||+.
T Consensus       139 ~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~--------d~a~lLV~~gAd~~~edke~-t~~~  209 (226)
T KOG4412|consen  139 GQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHP--------DVAVLLVRAGADTDREDKEG-TALR  209 (226)
T ss_pred             cCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCc--------hHHHHHHHhccceeeccccC-chHH
Confidence            78999999999999999999999999999999999999999888899        99999999999999999988 9988


Q ss_pred             cccchHHHHH
Q psy8420         142 ATTTGVADLI  151 (199)
Q Consensus       142 ~~~~~~~~~l  151 (199)
                      ....+..+.+
T Consensus       210 ~a~~~l~~al  219 (226)
T KOG4412|consen  210 IACNELLEAL  219 (226)
T ss_pred             HHHHHHHHHH
Confidence            7555554443

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.4e-23  Score=174.75  Aligned_cols=174  Identities=17%  Similarity=0.115  Sum_probs=142.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------D   62 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------~   62 (199)
                      +..|.||||+|+..++         .++++.|++.|++++.++..+.||||.|+..|+ ++                  |
T Consensus        32 ~~~g~tpL~~A~~~~~---------~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  102 (413)
T PHA02875         32 IYDGISPIKLAMKFRD---------SEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG  102 (413)
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCC
Confidence            3579999999999999         899999999999999988899999999999988 22                  5


Q ss_pred             cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      .+|++.|+..++.+++++|+++|++++.++..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~--------~~v~~Ll~~g~~~~~~d~~g~TpL~~  174 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI--------KGIELLIDHKACLDIEDCCGCTPLII  174 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            6899999999999999999999999999999999999999999999        99999999999999999999999998


Q ss_pred             ----ccchHHHHHHhhcccchhHHHHH-HHHhhccccCCCCCchhHHHHHHHhhhhhc
Q psy8420         143 ----TTTGVADLILRTLTKINLKCLAA-KVITQNNITYKGLVPHDLESFIELHGTALD  195 (199)
Q Consensus       143 ----~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  195 (199)
                          +..++++.|++.+++........ .....+.+. .+  ..++.+++..+|++++
T Consensus       175 A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~-~~--~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        175 AMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIE-NN--KIDIVRLFIKRGADCN  229 (413)
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHH-cC--CHHHHHHHHHCCcCcc
Confidence                56678899999877654422111 011111111 11  2345677777777765

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.6e-22  Score=159.82  Aligned_cols=139  Identities=12%  Similarity=0.022  Sum_probs=111.9

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------C-cc
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------D-TF   64 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~-~~   64 (199)
                      .|.||||+|+..++         .++++.|+..|++++.+|..|.||||+|+..++ ++                 | .+
T Consensus        60 d~~TpLh~Aa~~g~---------~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~T  130 (284)
T PHA02791         60 ENEFPLHQAATLED---------TKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKT  130 (284)
T ss_pred             CCCCHHHHHHHCCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcH
Confidence            46788999888888         888888888888888888888899998888887 22                 3 36


Q ss_pred             cccccccCCcHHHHHHHHhcCCCCccCC-CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCc-ccc
Q psy8420          65 HTNDVCKFPCAATTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP-IQA  142 (199)
Q Consensus        65 ~l~~~~~~~~~~~~~~Ll~~ga~v~~~d-~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp-l~~  142 (199)
                      |++.|+..++.+++++|+++|.+.  .| ..|.||||+|+..|+.        +++++|+++|++++..|..|.|| ||+
T Consensus       131 pL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~--------eiv~lLL~~gAd~n~~d~~g~t~~L~~  200 (284)
T PHA02791        131 SFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHV--------DMMILLLDYMTSTNTNNSLLFIPDIKL  200 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCH--------HHHHHHHHCCCCCCcccCCCCChHHHH
Confidence            788888888888888888876543  22 2478899999988888        88999998888888888888877 877


Q ss_pred             ----ccchHHHHHHhhcccchhH
Q psy8420         143 ----TTTGVADLILRTLTKINLK  161 (199)
Q Consensus       143 ----~~~~~~~~ll~~~~~~~~~  161 (199)
                          ...++++.|++.+++....
T Consensus       201 Aa~~~~~e~v~lLl~~Ga~in~~  223 (284)
T PHA02791        201 AIDNKDLEMLQALFKYDINIYSV  223 (284)
T ss_pred             HHHcCCHHHHHHHHHCCCCCccC
Confidence                5667888888887776554

>KOG0509|consensus

Probab=99.88  E-value=9.5e-23  Score=169.73  Aligned_cols=124  Identities=25%  Similarity=0.297  Sum_probs=102.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc-CCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS-RQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~-~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |+.|.|+||+|++.++         +++++.|+++|+++|+.. .-+.||||||+..               |+..++.+
T Consensus        75 D~~g~tlLHWAAiNNr---------l~v~r~li~~gadvn~~gG~l~stPLHWAar~---------------G~~~vv~l  130 (600)
T KOG0509|consen   75 DREGVTLLHWAAINNR---------LDVARYLISHGADVNAIGGVLGSTPLHWAARN---------------GHISVVDL  130 (600)
T ss_pred             CcCCccceeHHHHcCc---------HHHHHHHHHcCCCccccCCCCCCCcchHHHHc---------------CcHHHHHH
Confidence            6788888888888888         888888888888888887 4678888888888               88899999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-ccchH---HHHHHhhcc
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-TTTGV---ADLILRTLT  156 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-~~~~~---~~~ll~~~~  156 (199)
                      |+++||+++.+|.+|.+|+|.|+..++.        -++.+|+..|++++.+|.+|+||||+ +.++.   +..||+-++
T Consensus       131 LlqhGAdpt~~D~~G~~~lHla~~~~~~--------~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a  202 (600)
T KOG0509|consen  131 LLQHGADPTLKDKQGLTPLHLAAQFGHT--------ALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA  202 (600)
T ss_pred             HHHcCCCCceecCCCCcHHHHHHHhCch--------HHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc
Confidence            9999999999999999999999998888        88888888889999999999999988 33332   455555533


Q ss_pred             c
Q psy8420         157 K  157 (199)
Q Consensus       157 ~  157 (199)
                      .
T Consensus       203 ~  203 (600)
T KOG0509|consen  203 S  203 (600)
T ss_pred             c
Confidence            3

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.2e-22  Score=170.53  Aligned_cols=48  Identities=10%  Similarity=-0.011  Sum_probs=44.8

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET   59 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~   59 (199)
                      ..++||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..|+
T Consensus        35 ~~~~tPLh~A~~~g~---------~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~   82 (477)
T PHA02878         35 LIPFIPLHQAVEARN---------LDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPN   82 (477)
T ss_pred             ccCcchHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCcc
Confidence            457899999999999         999999999999999999999999999998765

>PHA02791 ankyrin-like protein; Provisional

Probab=99.88  E-value=8.1e-22  Score=155.83  Aligned_cols=172  Identities=12%  Similarity=0.001  Sum_probs=103.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+..++         .++++.|+..|++++..+  +.||||+|+..|+ ++                 |.
T Consensus        27 D~~G~TpLh~Aa~~g~---------~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~   95 (284)
T PHA02791         27 DVHGHSALYYAIADNN---------VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGN   95 (284)
T ss_pred             CCCCCcHHHHHHHcCC---------HHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            6789999999999999         999999999999998764  6899999999954 21                 44


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCC-cHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCC-CCCCCccc
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGN-TPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN-NKGLTPIQ  141 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~-tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~  141 (199)
                      +|++.|+..++.+++++|+++|++++.++..|+ ||||+|+..++.        +++++|++.+.+.  .| ..|.||||
T Consensus        96 TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~--------eivk~LL~~~~~~--~d~~~g~TpLh  165 (284)
T PHA02791         96 TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV--------SIVSYFLSEIPST--FDLAILLSCIH  165 (284)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCH--------HHHHHHHhcCCcc--cccccCccHHH
Confidence            555555555555555555555555555555553 555555555555        5555555554322  12 13555555


Q ss_pred             c----ccchHHHHHHhhcccchhHHHHHH-HHhhccccCCCCCchhHHHHHHHhhhhhccc
Q psy8420         142 A----TTTGVADLILRTLTKINLKCLAAK-VITQNNITYKGLVPHDLESFIELHGTALDKT  197 (199)
Q Consensus       142 ~----~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  197 (199)
                      +    +..++++.|++.+++......... ....+..  . .--.++.++|..+|++++..
T Consensus       166 ~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa--~-~~~~e~v~lLl~~Ga~in~~  223 (284)
T PHA02791        166 ITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAI--D-NKDLEMLQALFKYDINIYSV  223 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHH--H-cCCHHHHHHHHHCCCCCccC
Confidence            5    334455555555544332211000 0000000  0 01235667888888887644

>KOG0508|consensus

Probab=99.88  E-value=7.3e-22  Score=159.56  Aligned_cols=177  Identities=39%  Similarity=0.652  Sum_probs=150.1

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CCCcccccccccCCcHHHHH
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PVDTFHTNDVCKFPCAATTK   79 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~~~~~l~~~~~~~~~~~~~   79 (199)
                      |++.-.+.||+.|...++  .++.++......-+..-.....+.++|.||||+|+.... .+|.+|   .+++++..+++
T Consensus       438 ~~k~l~~~lhLv~llek~--~ct~e~~~~k~~~iyrl~~l~pr~~~~ft~LH~av~~~tt~~gry~---v~~fPs~~V~k  512 (615)
T KOG0508|consen  438 YNKALYIILHLVCLLEKV--ECTPEQDHLKHQTIYRLLKLAPRGKNGFTLLHLAVDKNTTNVGRYP---VCRFPSAHVTK  512 (615)
T ss_pred             HHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhccccccCCCchhhhhhccCCCCCCccc---ccCCcHHHHHH
Confidence            457788999999999984  333333333333333333445677899999999998866 667777   68889999999


Q ss_pred             HHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHHHHHHhhcccch
Q psy8420          80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKIN  159 (199)
Q Consensus        80 ~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~~~ll~~~~~~~  159 (199)
                      .|++.|+++|++|.+++||||++++...+        .++..|++.|++.+..|..|.|++.+........++......+
T Consensus       513 ~Llecgadvna~D~~~ntplHIa~~~~~~--------si~~aLie~Gah~datN~~~~t~~~ll~~~~~~~~l~p~~~~T  584 (615)
T KOG0508|consen  513 VLLECGADVNARDFDNNTPLHIAAQNNCP--------SIVNALIEAGAHLDATNAHKKTALDLLDEKLLAKLLQPFNYTT  584 (615)
T ss_pred             HHHHcCCCCCcccCCCCchhHHHHHhccH--------HHHHHHHHcccchhhhhhccccHHHHhchhHHHHhcCcchhhh
Confidence            99999999999999999999999999888        9999999999999999999999999965555556899999999


Q ss_pred             hHHHHHHHHhhccccCCCCCchhHHHHHHHh
Q psy8420         160 LKCLAAKVITQNNITYKGLVPHDLESFIELH  190 (199)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  190 (199)
                      +.|+.++++++..|.|.+++|..|++|+..|
T Consensus       585 L~cLaArai~~~~I~y~g~iP~~L~~Fi~lH  615 (615)
T KOG0508|consen  585 LQCLAARAIRKNDIPYKGQIPETLEEFIELH  615 (615)
T ss_pred             HHHHHHHHHHhcCCCccccCcHHHHHHHhcC
Confidence            9999999999999999999999999999876

>PHA02946 ankyin-like protein; Provisional

Probab=99.87  E-value=6.4e-22  Score=165.99  Aligned_cols=134  Identities=15%  Similarity=0.166  Sum_probs=111.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC---CC-----------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET---PV-----------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~---~~-----------------   61 (199)
                      |..|.||||+|+..++         .++++.|+++|++++.+|..|.||||+|+..+.   ++                 
T Consensus        69 d~~G~TpLh~Aa~~g~---------~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~  139 (446)
T PHA02946         69 DDDGNYPLHIASKINN---------NRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE  139 (446)
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC
Confidence            6789999999999999         999999999999999999999999999887653   11                 


Q ss_pred             -CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccC--cccchhhHHHHHHHHHHcCCCCCCCCCCCCC
Q psy8420          62 -DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYER--AISDFQTLHTIILDLTENGAHMDTVNNKGLT  138 (199)
Q Consensus        62 -~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~--~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  138 (199)
                       |.+|++ ++..++.+++++|++.|++++.+|..|+||||+|+..++  .        +++++|++.|++++.+|..|.|
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~--------~~v~~Ll~~Gadin~~d~~G~T  210 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKA--------STISWMMKLGISPSKPDHDGNT  210 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCH--------HHHHHHHHcCCCCcccCCCCCC
Confidence             456665 566688899999999999999999999999998877543  4        7889999999999999999999


Q ss_pred             ccccc------cchHHHHHHh
Q psy8420         139 PIQAT------TTGVADLILR  153 (199)
Q Consensus       139 pl~~~------~~~~~~~ll~  153 (199)
                      |||++      ..++++.|+.
T Consensus       211 pLH~Aa~~~~~~~~iv~lLl~  231 (446)
T PHA02946        211 PLHIVCSKTVKNVDIINLLLP  231 (446)
T ss_pred             HHHHHHHcCCCcHHHHHHHHc
Confidence            99982      2245666664

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.86  E-value=7.4e-21  Score=144.67  Aligned_cols=124  Identities=17%  Similarity=0.228  Sum_probs=77.0

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      +.++||||+|+..+.         ++.++.|+..   ++.++..|.||||+|+..+.             ++.+++++|+
T Consensus        19 ~~~~~pL~~A~~~~~---------~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~-------------~~~eiv~~Ll   73 (209)
T PHA02859         19 YRYCNPLFYYVEKDD---------IEGVKKWIKF---VNDCNDLYETPIFSCLEKDK-------------VNVEILKFLI   73 (209)
T ss_pred             hccCcHHHHHHHhCc---------HHHHHHHHHh---hhccCccCCCHHHHHHHcCC-------------CCHHHHHHHH
Confidence            345677777777777         6777777654   45556677777777765411             3566666666


Q ss_pred             hcCCCCccCC-CCCCcHHHHHHhc---cCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc------ccchHHHHHH
Q psy8420          83 RCGADVNAKD-YQGNTPLHIIATY---ERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA------TTTGVADLIL  152 (199)
Q Consensus        83 ~~ga~v~~~d-~~g~tpl~~a~~~---~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~------~~~~~~~~ll  152 (199)
                      ++|++++.++ ..|.||||+|+..   +..        +++++|+++|++++.+|..|.||||+      ...++++.|+
T Consensus        74 ~~gadvn~~~~~~g~TpLh~a~~~~~~~~~--------eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li  145 (209)
T PHA02859         74 ENGADVNFKTRDNNLSALHHYLSFNKNVEP--------EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLI  145 (209)
T ss_pred             HCCCCCCccCCCCCCCHHHHHHHhCccccH--------HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            6666666665 3566666665542   244        66666666666666666666666665      1234566666


Q ss_pred             hhcccch
Q psy8420         153 RTLTKIN  159 (199)
Q Consensus       153 ~~~~~~~  159 (199)
                      +.+.+..
T Consensus       146 ~~gadin  152 (209)
T PHA02859        146 DSGVSFL  152 (209)
T ss_pred             HcCCCcc
Confidence            6655543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.4e-21  Score=165.42  Aligned_cols=142  Identities=22%  Similarity=0.294  Sum_probs=121.6

Q ss_pred             ccchhhHHHHHH--HHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcC--C-CC---------------
Q psy8420           2 EDNLVTSLYLLV--ILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYE--T-PV---------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~--~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~--~-~~---------------   61 (199)
                      |..|.||||+|+  ..++         .++++.|++.|++++.++..|.||||+|+..+  + ++               
T Consensus       103 d~~g~tpL~~A~~~~~~~---------~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d  173 (480)
T PHA03100        103 DNNGITPLLYAISKKSNS---------YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKN  173 (480)
T ss_pred             CCCCCchhhHHHhcccCh---------HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccccc
Confidence            467888888888  7777         88888888888888888888889999988888  5 22               


Q ss_pred             --CcccccccccCCcHHHHHHHHhcCCCCccCCCCC------CcHHHHHHhccC--cccchhhHHHHHHHHHHcCCCCCC
Q psy8420          62 --DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQG------NTPLHIIATYER--AISDFQTLHTIILDLTENGAHMDT  131 (199)
Q Consensus        62 --~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g------~tpl~~a~~~~~--~~~~~~~~~~~~~~Ll~~ga~~~~  131 (199)
                        |.+|++.|+..++.+++++|+++|++++..+..|      .||+|.|+..++  .        +++++|+++|++++.
T Consensus       174 ~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~--------~iv~~Ll~~g~din~  245 (480)
T PHA03100        174 RYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITL--------EVVNYLLSYGVPINI  245 (480)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcH--------HHHHHHHHcCCCCCC
Confidence              5688888888888999999999999988888888      888899988888  7        999999999999999


Q ss_pred             CCCCCCCcccc----ccchHHHHHHhhcccchh
Q psy8420         132 VNNKGLTPIQA----TTTGVADLILRTLTKINL  160 (199)
Q Consensus       132 ~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~  160 (199)
                      +|..|.||||+    ...++++.|++.+++...
T Consensus       246 ~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~  278 (480)
T PHA03100        246 KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL  278 (480)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            99999999998    456788999998776544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.85  E-value=3.4e-21  Score=163.13  Aligned_cols=141  Identities=21%  Similarity=0.241  Sum_probs=128.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHH-----HHhcCC-CC--------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHL-----CVNYET-PV--------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~-----a~~~~~-~~--------------   61 (199)
                      ++.+.||||+|+..++         .++++.|+..|++++..+..+.||||+     |+..++ ++              
T Consensus        32 ~~~~~t~L~~A~~~~~---------~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~  102 (480)
T PHA03100         32 YKKPVLPLYLAKEARN---------IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAP  102 (480)
T ss_pred             hcccchhhhhhhccCC---------HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCC
Confidence            4678999999999999         999999999999999999999999999     988877 32              


Q ss_pred             ---Ccccccccc--cCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhcc--CcccchhhHHHHHHHHHHcCCCCCCCCC
Q psy8420          62 ---DTFHTNDVC--KFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYE--RAISDFQTLHTIILDLTENGAHMDTVNN  134 (199)
Q Consensus        62 ---~~~~l~~~~--~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~--~~~~~~~~~~~~~~~Ll~~ga~~~~~~~  134 (199)
                         |.+|++.|+  ..++.+++++|+++|++++..+..|.||||+|+..+  +.        +++++|+++|++++..+.
T Consensus       103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~--------~iv~~Ll~~g~din~~d~  174 (480)
T PHA03100        103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDL--------KILKLLIDKGVDINAKNR  174 (480)
T ss_pred             CCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChH--------HHHHHHHHCCCCcccccC
Confidence               678999999  999999999999999999999999999999999999  88        999999999999999999


Q ss_pred             CCCCcccc----ccchHHHHHHhhcccch
Q psy8420         135 KGLTPIQA----TTTGVADLILRTLTKIN  159 (199)
Q Consensus       135 ~g~tpl~~----~~~~~~~~ll~~~~~~~  159 (199)
                      .|.||||+    ...++++.|++.+++..
T Consensus       175 ~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  203 (480)
T PHA03100        175 YGYTPLHIAVEKGNIDVIKFLLDNGADIN  203 (480)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCcc
Confidence            99999998    56678899998876544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.85  E-value=7.5e-21  Score=144.64  Aligned_cols=132  Identities=19%  Similarity=0.206  Sum_probs=111.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC-CCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR-QNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~-~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|.||||+|+..+.       ++.++++.|++.|++++.++. .|.||||+|+..            ...+..+++++
T Consensus        48 ~~~g~TpLh~a~~~~~-------~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~------------~~~~~~eiv~~  108 (209)
T PHA02859         48 NDLYETPIFSCLEKDK-------VNVEILKFLIENGADVNFKTRDNNLSALHHYLSF------------NKNVEPEILKI  108 (209)
T ss_pred             CccCCCHHHHHHHcCC-------CCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh------------CccccHHHHHH
Confidence            5789999999998652       118999999999999999974 899999998765            11257999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHh--ccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-----ccchHHHHHHh
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIAT--YERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-----TTTGVADLILR  153 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~--~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-----~~~~~~~~ll~  153 (199)
                      |+++|++++.+|..|.||||+|+.  .++.        +++++|++.|++++.+|..|.||||.     ...++++.|++
T Consensus       109 Ll~~gadin~~d~~G~TpLh~a~~~~~~~~--------~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~  180 (209)
T PHA02859        109 LIDSGSSITEEDEDGKNLLHMYMCNFNVRI--------NVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTS  180 (209)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhccCCH--------HHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999999876  3567        99999999999999999999999995     34567888888


Q ss_pred             hcccchh
Q psy8420         154 TLTKINL  160 (199)
Q Consensus       154 ~~~~~~~  160 (199)
                      .+.+...
T Consensus       181 ~Gadi~~  187 (209)
T PHA02859        181 LGIDINE  187 (209)
T ss_pred             cCCCCCC
Confidence            8766543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.85  E-value=5.8e-21  Score=160.05  Aligned_cols=139  Identities=19%  Similarity=0.178  Sum_probs=123.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      +..|.||||.|+..|+         .++++.|++.|++++..+..|.||||.|+..++ ++                   
T Consensus        32 ~~~~~tpL~~A~~~g~---------~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~  102 (434)
T PHA02874         32 VDETTTPLIDAIRSGD---------AKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCI  102 (434)
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccC
Confidence            3568899999999999         999999999999999999999999999998876 21                   


Q ss_pred             ---------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHH
Q psy8420          62 ---------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIIL  120 (199)
Q Consensus        62 ---------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~  120 (199)
                                           |.+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++.        ++++
T Consensus       103 ~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~--------~iv~  174 (434)
T PHA02874        103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFF--------DIIK  174 (434)
T ss_pred             CHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcH--------HHHH
Confidence                                 56788889999999999999999999999999999999999999999        9999


Q ss_pred             HHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420         121 DLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus       121 ~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                      +|++.|++++..+..|.||||+    +..++++.|++.+.+
T Consensus       175 ~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~  215 (434)
T PHA02874        175 LLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH  215 (434)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            9999999999999999999998    566788888887544

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.3e-20  Score=157.90  Aligned_cols=140  Identities=21%  Similarity=0.238  Sum_probs=86.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..++ ++                 |.
T Consensus       121 ~~~g~T~Lh~A~~~~~---------~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~  191 (434)
T PHA02874        121 DAELKTFLHYAIKKGD---------LESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGE  191 (434)
T ss_pred             CCCCccHHHHHHHCCC---------HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC
Confidence            4679999999999999         999999999999999999999999999999944 11                 34


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT  143 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~  143 (199)
                      +|++.|+..++.+++++|++.|++++.++..|.||||.|+..+.         ..+.+|+ .|++++.+|..|.||||++
T Consensus       192 tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~---------~~i~~Ll-~~~~in~~d~~G~TpLh~A  261 (434)
T PHA02874        192 SPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR---------SAIELLI-NNASINDQDIDGSTPLHHA  261 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh---------HHHHHHH-cCCCCCCcCCCCCCHHHHH
Confidence            44445555555555555555555555555555555555544321         2222222 3444555555555555541


Q ss_pred             -----cchHHHHHHhhcccchh
Q psy8420         144 -----TTGVADLILRTLTKINL  160 (199)
Q Consensus       144 -----~~~~~~~ll~~~~~~~~  160 (199)
                           ..++++.|++.+++...
T Consensus       262 ~~~~~~~~iv~~Ll~~gad~n~  283 (434)
T PHA02874        262 INPPCDIDIIDILLYHKADISI  283 (434)
T ss_pred             HhcCCcHHHHHHHHHCcCCCCC
Confidence                 22344444444444333

>KOG0510|consensus

Probab=99.84  E-value=6.2e-21  Score=162.48  Aligned_cols=124  Identities=22%  Similarity=0.257  Sum_probs=117.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC--CC------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET--PV------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~--~~------------------   61 (199)
                      |..|+||||+||+.|+         .+.+..|+..|++++.++.++.||||.|+.+|+  ++                  
T Consensus       270 d~dg~tpLH~a~r~G~---------~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~  340 (929)
T KOG0510|consen  270 DNDGCTPLHYAARQGG---------PESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH  340 (929)
T ss_pred             cccCCchHHHHHHcCC---------hhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccccccc
Confidence            6789999999999999         999999999999999999999999999999988  33                  


Q ss_pred             CcccccccccCCcHHHHHHHHhcCCCCc---cCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCC
Q psy8420          62 DTFHTNDVCKFPCAATTKLLIRCGADVN---AKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT  138 (199)
Q Consensus        62 ~~~~l~~~~~~~~~~~~~~Ll~~ga~v~---~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  138 (199)
                      |.+|+|.|++.|+..++++|+.+|+...   ..|..|+||||.|+..|+.        +++++|+++|+++..+|..|.+
T Consensus       341 g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~--------~av~~Li~~Ga~I~~~n~~g~S  412 (929)
T KOG0510|consen  341 GMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNT--------SAVQKLISHGADIGVKNKKGKS  412 (929)
T ss_pred             CCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccH--------HHHHHHHHcCCceeeccccccc
Confidence            7899999999999999999999999887   4599999999999999999        9999999999999999999999


Q ss_pred             cccc
Q psy8420         139 PIQA  142 (199)
Q Consensus       139 pl~~  142 (199)
                      ++++
T Consensus       413 A~~~  416 (929)
T KOG0510|consen  413 AFDT  416 (929)
T ss_pred             cccc
Confidence            9995

>PHA03095 ankyrin-like protein; Provisional

Probab=99.84  E-value=1.8e-20  Score=158.34  Aligned_cols=127  Identities=27%  Similarity=0.341  Sum_probs=94.6

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCC-cHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFP-CAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~-~~~~~~~   80 (199)
                      +..|.||||+|+..+.      .+..++++.|++.|+++|.++..|.||||+|+..               + ..+++++
T Consensus        44 ~~~g~t~Lh~a~~~~~------~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~---------------~~~~~iv~l  102 (471)
T PHA03095         44 GEYGKTPLHLYLHYSS------EKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYN---------------ATTLDVIKL  102 (471)
T ss_pred             CCCCCCHHHHHHHhcC------CChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc---------------CCcHHHHHH
Confidence            4678999999999981      1118999999999999999999999999999999               5 4677777


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHH--hccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc------ccchHHHHHH
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIA--TYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA------TTTGVADLIL  152 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~--~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~------~~~~~~~~ll  152 (199)
                      |+++|++++.++..|.||||+|+  ..++.        +++++|+++|++++..|..|.||||+      ...++++.|+
T Consensus       103 Ll~~ga~in~~~~~g~tpLh~a~~~~~~~~--------~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll  174 (471)
T PHA03095        103 LIKAGADVNAKDKVGRTPLHVYLSGFNINP--------KVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLI  174 (471)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHhhCCcCCH--------HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence            77777777777777777777777  33455        67777777777777777777777765      1234566666


Q ss_pred             hhccc
Q psy8420         153 RTLTK  157 (199)
Q Consensus       153 ~~~~~  157 (199)
                      +.+.+
T Consensus       175 ~~g~~  179 (471)
T PHA03095        175 DAGAD  179 (471)
T ss_pred             HcCCC
Confidence            65433

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2e-20  Score=158.57  Aligned_cols=122  Identities=25%  Similarity=0.275  Sum_probs=95.1

Q ss_pred             ccc-hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------C
Q psy8420           2 EDN-LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------D   62 (199)
Q Consensus         2 ~~~-g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~   62 (199)
                      +.. |.||||+|+..++         .++++.|++.|++++.++..|.||||.|+..++ ++                 |
T Consensus       164 ~~~~g~tpLh~A~~~~~---------~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g  234 (477)
T PHA02878        164 DRHKGNTALHYATENKD---------QRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCG  234 (477)
T ss_pred             CCCCCCCHHHHHHhCCC---------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC
Confidence            345 9999999999999         999999999999999999999999999999966 22                 5


Q ss_pred             cccccccccC-CcHHHHHHHHhcCCCCccCCC-CCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcc
Q psy8420          63 TFHTNDVCKF-PCAATTKLLIRCGADVNAKDY-QGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI  140 (199)
Q Consensus        63 ~~~l~~~~~~-~~~~~~~~Ll~~ga~v~~~d~-~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  140 (199)
                      .+|++.|+.. ++.+++++|+++|++++.++. .|.||||+|  .+..        +++++|+++|++++.+|..|.|||
T Consensus       235 ~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~--------~~v~~Ll~~gadin~~d~~g~TpL  304 (477)
T PHA02878        235 NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSE--------RKLKLLLEYGADINSLNSYKLTPL  304 (477)
T ss_pred             CCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCH--------HHHHHHHHCCCCCCCcCCCCCCHH
Confidence            6677776654 567777777777777777664 577777777  3445        667777777777777777777777


Q ss_pred             cc
Q psy8420         141 QA  142 (199)
Q Consensus       141 ~~  142 (199)
                      ++
T Consensus       305 ~~  306 (477)
T PHA02878        305 SS  306 (477)
T ss_pred             HH
Confidence            76

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=2.7e-20  Score=137.13  Aligned_cols=121  Identities=17%  Similarity=0.177  Sum_probs=106.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHH------cCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCc-
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVF------SLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPC-   74 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~------~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~-   74 (199)
                      |..|.||||+|+..|+         .++++.|+.      .|++++.+|..|.||||+|+..               ++ 
T Consensus        18 ~~~g~t~Lh~Aa~~g~---------~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~---------------g~~   73 (169)
T PHA02741         18 NSEGENFFHEAARCGC---------FDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEK---------------HEA   73 (169)
T ss_pred             ccCCCCHHHHHHHcCC---------HHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHc---------------CCh
Confidence            5789999999999999         899998753      3688999999999999999998               66 


Q ss_pred             ---HHHHHHHHhcCCCCccCCC-CCCcHHHHHHhccCcccchhhHHHHHHHHHH-cCCCCCCCCCCCCCcccc----ccc
Q psy8420          75 ---AATTKLLIRCGADVNAKDY-QGNTPLHIIATYERAISDFQTLHTIILDLTE-NGAHMDTVNNKGLTPIQA----TTT  145 (199)
Q Consensus        75 ---~~~~~~Ll~~ga~v~~~d~-~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~----~~~  145 (199)
                         .+++++|++.|++++.++. .|+||||+|+..++.        +++++|+. .|++++..|..|.|||++    ...
T Consensus        74 ~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~--------~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~  145 (169)
T PHA02741         74 QLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDH--------DLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV  145 (169)
T ss_pred             HHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCH--------HHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH
Confidence               5899999999999999985 999999999999999        99999997 599999999999999998    344


Q ss_pred             hHHHHHHhh
Q psy8420         146 GVADLILRT  154 (199)
Q Consensus       146 ~~~~~ll~~  154 (199)
                      ++++.|++.
T Consensus       146 ~iv~~L~~~  154 (169)
T PHA02741        146 AMMQILREI  154 (169)
T ss_pred             HHHHHHHHH
Confidence            555555554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2.8e-20  Score=154.94  Aligned_cols=140  Identities=18%  Similarity=0.147  Sum_probs=101.4

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcc-cccCCCchHHHHHHhcCC-CC-----------------Ccc
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLS-VASRQNQSLLHLCVNYET-PV-----------------DTF   64 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~-~~~~~g~t~L~~a~~~~~-~~-----------------~~~   64 (199)
                      .+.||||+|+..|+         .++++.|+..|..++ ..+..|.||||+|+..++ ++                 |.+
T Consensus        67 ~~~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~t  137 (413)
T PHA02875         67 DIESELHDAVEEGD---------VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFS  137 (413)
T ss_pred             CcccHHHHHHHCCC---------HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCC
Confidence            34555555555555         555555555554433 223345555555555544 11                 344


Q ss_pred             cccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCC-Ccccc-
Q psy8420          65 HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL-TPIQA-  142 (199)
Q Consensus        65 ~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~-  142 (199)
                      |+|.|+..++.+++++|+++|++++.+|..|.||||+|+..++.        +++++|++.|++++..+..|. ||+++ 
T Consensus       138 pLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~--------eiv~~Ll~~ga~~n~~~~~~~~t~l~~A  209 (413)
T PHA02875        138 PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDI--------AICKMLLDSGANIDYFGKNGCVAALCYA  209 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHhCCCCCCcCCCCCCchHHHHH
Confidence            55555555999999999999999999999999999999999999        999999999999999998875 67775 


Q ss_pred             ---ccchHHHHHHhhcccchh
Q psy8420         143 ---TTTGVADLILRTLTKINL  160 (199)
Q Consensus       143 ---~~~~~~~~ll~~~~~~~~  160 (199)
                         ...++++.|++.+++...
T Consensus       210 ~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        210 IENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             HHcCCHHHHHHHHHCCcCcch
Confidence               566789999999877654

>KOG0195|consensus

Probab=99.83  E-value=9.7e-21  Score=145.11  Aligned_cols=121  Identities=24%  Similarity=0.295  Sum_probs=112.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|++|||+||+.|+         ..+++.|+.+|+.+|..+.-..||||+|+..               |+.++++.|
T Consensus        31 ddhgfsplhwaakegh---------~aivemll~rgarvn~tnmgddtplhlaaah---------------ghrdivqkl   86 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGH---------VAIVEMLLSRGARVNSTNMGDDTPLHLAAAH---------------GHRDIVQKL   86 (448)
T ss_pred             cccCcchhhhhhhccc---------HHHHHHHHhcccccccccCCCCcchhhhhhc---------------ccHHHHHHH
Confidence            5689999999999999         9999999999999999999889999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHHHHHHhh
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRT  154 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~~~ll~~  154 (199)
                      ++..+++|+.+..|+|||||||.-|..        .+.+-|+..|+.++..|+.|.||++.+.....+.|++.
T Consensus        87 l~~kadvnavnehgntplhyacfwgyd--------qiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~  151 (448)
T KOG0195|consen   87 LSRKADVNAVNEHGNTPLHYACFWGYD--------QIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEI  151 (448)
T ss_pred             HHHhcccchhhccCCCchhhhhhhcHH--------HHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHH
Confidence            999999999999999999999999999        99999999999999999999999998665555555443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.83  E-value=4.6e-20  Score=155.86  Aligned_cols=88  Identities=20%  Similarity=0.290  Sum_probs=61.4

Q ss_pred             cccccccccCCcH--HHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcc
Q psy8420          63 TFHTNDVCKFPCA--ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI  140 (199)
Q Consensus        63 ~~~l~~~~~~~~~--~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  140 (199)
                      .+|+|.|+..+..  .+++.|+..|+++|.+|..|+||||+|+..++.        +++++|++.|++++.+|..|.|||
T Consensus       223 ~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~--------~~v~~LL~~gad~n~~~~~g~tpl  294 (471)
T PHA03095        223 NTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNP--------RACRRLIALGADINAVSSDGNTPL  294 (471)
T ss_pred             CCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCcccCCCCCCHH
Confidence            3444444444332  355566677777777777788888888887777        888888888888888888888888


Q ss_pred             cc----ccchHHHHHHhhcccc
Q psy8420         141 QA----TTTGVADLILRTLTKI  158 (199)
Q Consensus       141 ~~----~~~~~~~~ll~~~~~~  158 (199)
                      ++    ...++++.|++.+.+.
T Consensus       295 ~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        295 SLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             HHHHHhCCHHHHHHHHHhCCCH
Confidence            77    4556677777765544

>KOG0509|consensus

Probab=99.83  E-value=1.1e-20  Score=157.62  Aligned_cols=106  Identities=25%  Similarity=0.239  Sum_probs=83.0

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhc
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRC   84 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~   84 (199)
                      +.||||+|++.|+         +.+++.|+++|++++.+|..|.+|+|.|+.+               ++..++-+|+.+
T Consensus       112 ~stPLHWAar~G~---------~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~---------------~~~~~vayll~~  167 (600)
T KOG0509|consen  112 GSTPLHWAARNGH---------ISVVDLLLQHGADPTLKDKQGLTPLHLAAQF---------------GHTALVAYLLSK  167 (600)
T ss_pred             CCCcchHHHHcCc---------HHHHHHHHHcCCCCceecCCCCcHHHHHHHh---------------CchHHHHHHHHh
Confidence            5799999999999         9999999999999999999999999999999               666666666666


Q ss_pred             CCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCC-CCCCCcccc
Q psy8420          85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN-NKGLTPIQA  142 (199)
Q Consensus        85 ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~  142 (199)
                      |++++.+|.+|+||||+|+..+..        ..+..|++.|+.+...| .+|.||||+
T Consensus       168 ~~d~d~~D~~grTpLmwAaykg~~--------~~v~~LL~f~a~~~~~d~~~g~TpLHw  218 (600)
T KOG0509|consen  168 GADIDLRDNNGRTPLMWAAYKGFA--------LFVRRLLKFGASLLLTDDNHGNTPLHW  218 (600)
T ss_pred             cccCCCcCCCCCCHHHHHHHhccc--------HHHHHHHHhcccccccccccCCchHHH
Confidence            666666666666666666666655        44666666666666665 566666666

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.83  E-value=7.6e-20  Score=159.68  Aligned_cols=166  Identities=13%  Similarity=0.109  Sum_probs=125.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCC--cHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFP--CAATTK   79 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~--~~~~~~   79 (199)
                      |..|.||||+|+....       ++.++++.|++.|++++.+|..|.||||+|+..               +  ..++++
T Consensus       174 d~~G~TpLH~A~~n~~-------~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~---------------g~~~~eIVk  231 (764)
T PHA02716        174 KKTGYGILHAYLGNMY-------VDIDILEWLCNNGVNVNLQNNHLITPLHTYLIT---------------GNVCASVIK  231 (764)
T ss_pred             CCCCCcHHHHHHHhcc-------CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc---------------CCCCHHHHH
Confidence            5679999998865432       127899999999999999999999999999998               5  468999


Q ss_pred             HHHhcCCCCccCCCCCCcHHHHHHh-------------------------------------ccCcccchhhHHHHHHHH
Q psy8420          80 LLIRCGADVNAKDYQGNTPLHIIAT-------------------------------------YERAISDFQTLHTIILDL  122 (199)
Q Consensus        80 ~Ll~~ga~v~~~d~~g~tpl~~a~~-------------------------------------~~~~~~~~~~~~~~~~~L  122 (199)
                      +|+++|+++|.+|..|.||||+|+.                                     .++.        +++++|
T Consensus       232 lLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~l--------eiVklL  303 (764)
T PHA02716        232 KIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDI--------SVVYSF  303 (764)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCH--------HHHHHH
Confidence            9999999999999999999998642                                     2333        789999


Q ss_pred             HHcCCCCCCCCCCCCCcccc------ccchHHHHHHhhcccchhHHH---------HHH--HHhhccccCCCCCchhHHH
Q psy8420         123 TENGAHMDTVNNKGLTPIQA------TTTGVADLILRTLTKINLKCL---------AAK--VITQNNITYKGLVPHDLES  185 (199)
Q Consensus       123 l~~ga~~~~~~~~g~tpl~~------~~~~~~~~ll~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~l~~  185 (199)
                      ++.|++++.+|..|+||||+      ...++++.|++.+++......         ...  +.........+....++.+
T Consensus       304 Le~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVk  383 (764)
T PHA02716        304 LQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQ  383 (764)
T ss_pred             HhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHH
Confidence            99999999999999999996      235789999988665433221         110  0000000001123457788


Q ss_pred             HHHHhhhhhccc
Q psy8420         186 FIELHGTALDKT  197 (199)
Q Consensus       186 ~~~~~~~~~~~~  197 (199)
                      ++..+|++++..
T Consensus       384 lLL~~GADIn~k  395 (764)
T PHA02716        384 CLISLGADITAV  395 (764)
T ss_pred             HHHHCCCCCCCc
Confidence            888999988754

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.83  E-value=3.2e-20  Score=163.50  Aligned_cols=140  Identities=19%  Similarity=0.167  Sum_probs=104.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHH-HHHHHHHHcCCCcccccCCCchHHHHHHhcCC--CC-----------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEE-YRIYKLVFSLNKLSVASRQNQSLLHLCVNYET--PV-----------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~-~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~--~~-----------------   61 (199)
                      |..|.||||+|+..+.         . .+++.|++.|++++.+|..|.||||+|+..|.  ++                 
T Consensus       270 d~~g~TpLh~Aa~~~~---------~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~  340 (682)
T PHA02876        270 DDCKNTPLHHASQAPS---------LSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRL  340 (682)
T ss_pred             CCCCCCHHHHHHhCCC---------HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccC
Confidence            4568888888888876         4 57777888888888888888888888887763  11                 


Q ss_pred             CcccccccccC-CcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcc
Q psy8420          62 DTFHTNDVCKF-PCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI  140 (199)
Q Consensus        62 ~~~~l~~~~~~-~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  140 (199)
                      |.+|++.|+.. +..+++.+|++.|++++.+|..|.||||+|+..++.        +++++|+++|++++..+..|.|||
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~--------~iv~~Ll~~gad~~~~~~~g~T~L  412 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNV--------VIINTLLDYGADIEALSQKIGTAL  412 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCccccCCCCCchH
Confidence            56777777764 467777888888888888888888888888888877        788888888888777777777887


Q ss_pred             ccc-----cchHHHHHHhhcccc
Q psy8420         141 QAT-----TTGVADLILRTLTKI  158 (199)
Q Consensus       141 ~~~-----~~~~~~~ll~~~~~~  158 (199)
                      |++     ....++.|++.+.+.
T Consensus       413 h~A~~~~~~~~~vk~Ll~~gadi  435 (682)
T PHA02876        413 HFALCGTNPYMSVKTLIDRGANV  435 (682)
T ss_pred             HHHHHcCCHHHHHHHHHhCCCCC
Confidence            772     122356666665444

>PHA02795 ankyrin-like protein; Provisional

Probab=99.82  E-value=5.3e-20  Score=151.54  Aligned_cols=137  Identities=17%  Similarity=0.081  Sum_probs=116.6

Q ss_pred             ccchhhHHHHHHH--HhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------C-------cc
Q psy8420           2 EDNLVTSLYLLVI--LTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------D-------TF   64 (199)
Q Consensus         2 ~~~g~t~Lh~a~~--~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------~-------~~   64 (199)
                      +.++.|+||.++.  .++         .++++.|+.+|++++.++  +.||+|.|+..++ ++       |       .+
T Consensus       113 ~~~~~~~L~~~~~n~~n~---------~eiV~~LI~~GADIn~~~--~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~  181 (437)
T PHA02795        113 CNSVQDLLLYYLSNAYVE---------IDIVDFMVDHGAVIYKIE--CLNAYFRGICKKESSVVEFILNCGIPDENDVKL  181 (437)
T ss_pred             cccccHHHHHHHHhcCCC---------HHHHHHHHHCCCCCCCCC--CCCHHHHHHHcCcHHHHHHHHhcCCcccccccc
Confidence            4678999999999  666         999999999999999854  4799999998876 33       1       12


Q ss_pred             ---------cccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCC
Q psy8420          65 ---------HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK  135 (199)
Q Consensus        65 ---------~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~  135 (199)
                               +++.+...++.+++++|+++|+++|.+|..|.||||+|+..++.        +++++|+++|++++.+|..
T Consensus       182 ~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~--------eiVelLL~~GAdIN~~d~~  253 (437)
T PHA02795        182 DLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYI--------DLVSWLLENGANVNAVMSN  253 (437)
T ss_pred             hhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCcCCC
Confidence                     23345566788999999999999999999999999999999999        9999999999999999999


Q ss_pred             CCCccccc-c-----------chHHHHHHhhccc
Q psy8420         136 GLTPIQAT-T-----------TGVADLILRTLTK  157 (199)
Q Consensus       136 g~tpl~~~-~-----------~~~~~~ll~~~~~  157 (199)
                      |.||||++ .           .++++.|++.+.+
T Consensus       254 G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        254 GYTCLDVAVDRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             CCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence            99999992 1           2588888887654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.82  E-value=3.9e-20  Score=165.67  Aligned_cols=124  Identities=18%  Similarity=0.206  Sum_probs=116.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC---------------Cccc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV---------------DTFH   65 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~---------------~~~~   65 (199)
                      |..|.||||+|+..|+         .++++.|+++|+++|.+|.+|.||||+|+..|+ .+               +.++
T Consensus       555 d~~G~TpLh~Aa~~g~---------~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~  625 (823)
T PLN03192        555 DSKGRTPLHIAASKGY---------EDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDL  625 (823)
T ss_pred             CCCCCCHHHHHHHcCh---------HHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchH
Confidence            6789999999999999         999999999999999999999999999999998 33               4567


Q ss_pred             ccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCC-CCcccc
Q psy8420          66 TNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG-LTPIQA  142 (199)
Q Consensus        66 l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g-~tpl~~  142 (199)
                      ++.|+..++.++++.|+++|+++|.+|..|+||||+|+..++.        +++++|+++|++++..|..| .||..+
T Consensus       626 L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~--------~iv~~Ll~~GAdv~~~~~~g~~t~~~l  695 (823)
T PLN03192        626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHV--------DMVRLLIMNGADVDKANTDDDFSPTEL  695 (823)
T ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH--------HHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence            8889999999999999999999999999999999999999999        99999999999999999988 888876

>PHA02798 ankyrin-like protein; Provisional

Probab=99.82  E-value=2.6e-19  Score=152.18  Aligned_cols=145  Identities=17%  Similarity=0.146  Sum_probs=107.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC----CC----------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET----PV----------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~----~~----------------   61 (199)
                      |..|.||||+|+..+.+      .+.++++.|++.|++++.+|..|.||||+|+..++    ++                
T Consensus       106 d~~G~TpLh~a~~~~~~------~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~  179 (489)
T PHA02798        106 NSDGETPLYCLLSNGYI------NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNN  179 (489)
T ss_pred             CCCcCcHHHHHHHcCCc------ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccC
Confidence            46788888888876531      12678888888888888888888888888877664    11                


Q ss_pred             --Cccccccccc----CCcHHHHHHHHhcCC---------------------------------------CCccCCCCCC
Q psy8420          62 --DTFHTNDVCK----FPCAATTKLLIRCGA---------------------------------------DVNAKDYQGN   96 (199)
Q Consensus        62 --~~~~l~~~~~----~~~~~~~~~Ll~~ga---------------------------------------~v~~~d~~g~   96 (199)
                        +.+|++.+..    .+..+++++|+++|+                                       ++|.+|..|+
T Consensus       180 ~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~  259 (489)
T PHA02798        180 KEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGF  259 (489)
T ss_pred             cCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCc
Confidence              2345543322    235666666666654                                       4455677899


Q ss_pred             cHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchh
Q psy8420          97 TPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINL  160 (199)
Q Consensus        97 tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~  160 (199)
                      ||||+|+..++.        +++++|++.|++++.+|..|.|||++    ....+++.+++.+.+...
T Consensus       260 TPL~~A~~~~~~--------~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        260 NPLYYSVSHNNR--------KIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             cHHHHHHHcCcH--------HHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHH
Confidence            999999999999        99999999999999999999999998    445677888887665543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.81  E-value=1.8e-19  Score=153.38  Aligned_cols=144  Identities=19%  Similarity=0.156  Sum_probs=113.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCc-ccccCCCchHHHHHHhcC--C-CC----------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKL-SVASRQNQSLLHLCVNYE--T-PV----------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i-~~~~~~g~t~L~~a~~~~--~-~~----------------   61 (199)
                      |..|.||||.|+..+.      .++.++++.|+++|+++ +.++..|.||||+|+..+  + ++                
T Consensus       105 d~~g~tpL~~a~~~~~------~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~  178 (494)
T PHA02989        105 TFNGVSPIVCFIYNSN------INNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTS  178 (494)
T ss_pred             CCCCCcHHHHHHHhcc------cCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccc
Confidence            5678999998877643      12278999999999999 788999999999987543  2 21                


Q ss_pred             --Cccccccccc----CCcHHHHHHHHhcCCCCcc--------------------------------------CCCCCCc
Q psy8420          62 --DTFHTNDVCK----FPCAATTKLLIRCGADVNA--------------------------------------KDYQGNT   97 (199)
Q Consensus        62 --~~~~l~~~~~----~~~~~~~~~Ll~~ga~v~~--------------------------------------~d~~g~t   97 (199)
                        |.+|++.+..    .++.+++++|++.|++++.                                      +|..|+|
T Consensus       179 ~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~T  258 (494)
T PHA02989        179 LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFN  258 (494)
T ss_pred             ccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCC
Confidence              4566665443    3478888888888876654                                      4556999


Q ss_pred             HHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420          98 PLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKIN  159 (199)
Q Consensus        98 pl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~  159 (199)
                      |||+|+..++.        +++++|++.|++++.+|..|.||||+    ...++++.|++......
T Consensus       259 pL~~Aa~~~~~--------~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~~  316 (494)
T PHA02989        259 PLLISAKVDNY--------EAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGKY  316 (494)
T ss_pred             HHHHHHHhcCH--------HHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCChH
Confidence            99999999999        99999999999999999999999999    55677888888754433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.6e-19  Score=132.55  Aligned_cols=129  Identities=17%  Similarity=0.174  Sum_probs=107.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcH---HHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCA---ATT   78 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~---~~~   78 (199)
                      +..+.++||.||+.|.+...     .++++.++..|+.++.+|..|.||||+|+..               +..   +++
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l-----~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~---------------g~~~~~~~i   76 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYEL-----MEVAPFISGDGHLLHRYDHHGRQCTHMVAWY---------------DRANAVMKI   76 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHH-----HHHHHHHhhcchhhhccCCCCCcHHHHHHHh---------------CccCHHHHH
Confidence            45677899999999981100     1556677788999999999999999999998               554   458


Q ss_pred             HHHHhcCCCCccCC-CCCCcHHHHHHhccCcccchhhHHHHHHHHHH-cCCCCCCCCCCCCCcccc----ccchHHHHHH
Q psy8420          79 KLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTE-NGAHMDTVNNKGLTPIQA----TTTGVADLIL  152 (199)
Q Consensus        79 ~~Ll~~ga~v~~~d-~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~----~~~~~~~~ll  152 (199)
                      ++|+..|++++.++ ..|.||||+|+..++.        +++++|++ .|++++.+|..|.||||+    ...++++.|+
T Consensus        77 ~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~--------~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll  148 (166)
T PHA02743         77 ELLVNMGADINARELGTGNTLLHIAASTKNY--------ELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILR  148 (166)
T ss_pred             HHHHHcCCCCCCCCCCCCCcHHHHHHHhCCH--------HHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999998 5899999999999999        99999995 799999999999999998    3456777777


Q ss_pred             hhcccc
Q psy8420         153 RTLTKI  158 (199)
Q Consensus       153 ~~~~~~  158 (199)
                      +.+++.
T Consensus       149 ~~ga~~  154 (166)
T PHA02743        149 ANGAVC  154 (166)
T ss_pred             HcCCCC
Confidence            775544

>PHA02917 ankyrin-like protein; Provisional

Probab=99.81  E-value=1.1e-19  Score=158.45  Aligned_cols=143  Identities=15%  Similarity=0.019  Sum_probs=118.4

Q ss_pred             ccchhhHHHHHHHH---hhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------Cc--
Q psy8420           2 EDNLVTSLYLLVIL---TKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------DT--   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~---~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------~~--   63 (199)
                      |.+|.||||+||..   |+         .++++.|+..|++++.++..|.||||+|+..++ .+            +.  
T Consensus        29 d~~g~t~Lh~a~~~~~~~~---------~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n   99 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNN---------VEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSN   99 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCc---------HHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCC
Confidence            67899999998776   56         899999999999999999999999999999886 32            11  


Q ss_pred             -----ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHH--hccCcccchhhHHHHHHHHHHcCCCCCCCCCC-
Q psy8420          64 -----FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA--TYERAISDFQTLHTIILDLTENGAHMDTVNNK-  135 (199)
Q Consensus        64 -----~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~--~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~-  135 (199)
                           .+++.|+..++.+++++|+++|+++|.+|..|.||||.++  ..++.        +++++|+++|++++..|.. 
T Consensus       100 ~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~--------eivklLi~~Ga~vn~~d~~~  171 (661)
T PHA02917        100 INDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVP--------EIIDLFIENGCSVLYEDEDD  171 (661)
T ss_pred             CCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCH--------HHHHHHHHcCCCcccccccc
Confidence                 2233477778999999999999999999999999999654  46788        9999999999999876532 


Q ss_pred             --C-----------CCccccc---------------cchHHHHHHhhcccchhH
Q psy8420         136 --G-----------LTPIQAT---------------TTGVADLILRTLTKINLK  161 (199)
Q Consensus       136 --g-----------~tpl~~~---------------~~~~~~~ll~~~~~~~~~  161 (199)
                        |           .||||++               ..++++.|++.+++....
T Consensus       172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~  225 (661)
T PHA02917        172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSI  225 (661)
T ss_pred             ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccC
Confidence              3           5999983               246899999987776654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.9e-19  Score=158.62  Aligned_cols=125  Identities=21%  Similarity=0.208  Sum_probs=82.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------Cccccc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------DTFHTN   67 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------~~~~l~   67 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++..+..|.||||+|+..++ ++             +..++.
T Consensus       175 d~~G~TpLh~Aa~~G~---------~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~  245 (682)
T PHA02876        175 DIYCITPIHYAAERGN---------AKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLL  245 (682)
T ss_pred             CCCCCCHHHHHHHCCC---------HHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHH
Confidence            5679999999999999         999999999999999999999999999998877 22             122233


Q ss_pred             ccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        68 ~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      .++..++.+.+++|++.|++++..|..|.||||+|+..+..       ..++++|++.|++++..|..|.||||+
T Consensus       246 ~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~-------~~iv~lLl~~gadin~~d~~g~TpLh~  313 (682)
T PHA02876        246 KAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSL-------SRLVPKLLERGADVNAKNIKGETPLYL  313 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCH-------HHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            34444455555555555555555555555555555544432       024445555555555555555555554

>PHA02946 ankyin-like protein; Provisional

Probab=99.80  E-value=3.7e-19  Score=149.37  Aligned_cols=122  Identities=21%  Similarity=0.200  Sum_probs=88.6

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhc
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRC   84 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~   84 (199)
                      ++++||.++....       .+.++++.|+++|+++|.+|..|.||||+|+..               ++.+++++|+++
T Consensus        37 ~~~~Lh~~~~~~~-------~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~---------------g~~eiv~lLL~~   94 (446)
T PHA02946         37 NYHILHAYCGIKG-------LDERFVEELLHRGYSPNETDDDGNYPLHIASKI---------------NNNRIVAMLLTH   94 (446)
T ss_pred             CChHHHHHHHhcC-------CCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHc---------------CCHHHHHHHHHC
Confidence            4689998876554       126899999999999999999999999999999               677777777777


Q ss_pred             CCCCccCCCCCCcHHHHHHhccC--cccchhhHHHHHHHHHHcCCCCCC-CCCCCCCcccc---ccchHHHHHHhhcc
Q psy8420          85 GADVNAKDYQGNTPLHIIATYER--AISDFQTLHTIILDLTENGAHMDT-VNNKGLTPIQA---TTTGVADLILRTLT  156 (199)
Q Consensus        85 ga~v~~~d~~g~tpl~~a~~~~~--~~~~~~~~~~~~~~Ll~~ga~~~~-~~~~g~tpl~~---~~~~~~~~ll~~~~  156 (199)
                      |++++.+|..|.||||+|+..+.  .        +++++|+++|++++. .+..|.|||+.   ...++++.|++.+.
T Consensus        95 GAdin~~d~~g~TpLh~A~~~~~~~~--------e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~ga  164 (446)
T PHA02946         95 GADPNACDKQHKTPLYYLSGTDDEVI--------ERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGF  164 (446)
T ss_pred             cCCCCCCCCCCCCHHHHHHHcCCchH--------HHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccc
Confidence            77777777777777777665432  4        566677777777664 46667777655   33455566665543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=1.6e-19  Score=130.92  Aligned_cols=124  Identities=22%  Similarity=0.212  Sum_probs=99.0

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHc-----CCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcH-
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-----LNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCA-   75 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-----g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~-   75 (199)
                      |+.|.||||+|++.|+         ...+......     +..++.+|..|.||||+|+..               ++. 
T Consensus        14 d~~g~tpLh~A~~~g~---------~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~---------------~~~~   69 (154)
T PHA02736         14 DIEGENILHYLCRNGG---------VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNP---------------DKAD   69 (154)
T ss_pred             CCCCCCHHHHHHHhCC---------HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeeccc---------------Cchh
Confidence            6789999999999997         3222111111     122446788999999999988               554 


Q ss_pred             --HHHHHHHhcCCCCccCCC-CCCcHHHHHHhccCcccchhhHHHHHHHHHH-cCCCCCCCCCCCCCcccc----ccchH
Q psy8420          76 --ATTKLLIRCGADVNAKDY-QGNTPLHIIATYERAISDFQTLHTIILDLTE-NGAHMDTVNNKGLTPIQA----TTTGV  147 (199)
Q Consensus        76 --~~~~~Ll~~ga~v~~~d~-~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~----~~~~~  147 (199)
                        +++++|++.|++++.++. .|+||||+|+..++.        +++++|+. .|++++.+|..|.||||+    ...++
T Consensus        70 ~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~--------~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i  141 (154)
T PHA02736         70 PQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNY--------ELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKM  141 (154)
T ss_pred             HHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCH--------HHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHH
Confidence              578999999999999984 899999999999999        99999997 599999999999999998    34556


Q ss_pred             HHHHHhhccc
Q psy8420         148 ADLILRTLTK  157 (199)
Q Consensus       148 ~~~ll~~~~~  157 (199)
                      ++.|+..++.
T Consensus       142 ~~~Ll~~ga~  151 (154)
T PHA02736        142 MNILRAKGAQ  151 (154)
T ss_pred             HHHHHHcCCC
Confidence            6777766543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.80  E-value=3.1e-19  Score=155.86  Aligned_cols=142  Identities=18%  Similarity=0.172  Sum_probs=116.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhc---CC-CC-------------Ccc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNY---ET-PV-------------DTF   64 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~---~~-~~-------------~~~   64 (199)
                      |..|.||||+|+..|++.       .++++.|++.|+++|.++..|.||||+|+..   ++ ++             ...
T Consensus       209 D~~G~TPLH~Aa~~g~~~-------~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~  281 (764)
T PHA02716        209 NNHLITPLHTYLITGNVC-------ASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNI  281 (764)
T ss_pred             CCCCCCHHHHHHHcCCCC-------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccc
Confidence            578999999999999611       4899999999999999999999999998642   22 11             111


Q ss_pred             c--cc---ccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHh--ccCcccchhhHHHHHHHHHHcCCCCCCCCCCCC
Q psy8420          65 H--TN---DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIAT--YERAISDFQTLHTIILDLTENGAHMDTVNNKGL  137 (199)
Q Consensus        65 ~--l~---~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~--~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~  137 (199)
                      |  ++   .++..++.+++++|++.|++++.+|..|+||||+|+.  .++.        +++++|++.|++++.+|..|.
T Consensus       282 ~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~--------eIVklLLe~GADIN~kD~~G~  353 (764)
T PHA02716        282 PMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIST--------DIIKLLHEYGNDLNEPDNIGN  353 (764)
T ss_pred             hhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCc--------hHHHHHHHcCCCCccCCCCCC
Confidence            2  11   2567789999999999999999999999999999765  3567        999999999999999999999


Q ss_pred             Cccccc------------------cchHHHHHHhhcccc
Q psy8420         138 TPIQAT------------------TTGVADLILRTLTKI  158 (199)
Q Consensus       138 tpl~~~------------------~~~~~~~ll~~~~~~  158 (199)
                      ||||++                  ..++++.|++.+++.
T Consensus       354 TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADI  392 (764)
T PHA02716        354 TVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADI  392 (764)
T ss_pred             CHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCC
Confidence            999962                  346788888886543

>KOG0502|consensus

Probab=99.80  E-value=8.9e-20  Score=134.78  Aligned_cols=120  Identities=18%  Similarity=0.178  Sum_probs=106.6

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |+.|+|||.||+.+|+         +.+++.|+..|++++...+..+++|.+|+..               |..+++++|
T Consensus       157 De~GfTpLiWAaa~G~---------i~vV~fLL~~GAdp~~lgk~resALsLAt~g---------------gytdiV~lL  212 (296)
T KOG0502|consen  157 DEFGFTPLIWAAAKGH---------IPVVQFLLNSGADPDALGKYRESALSLATRG---------------GYTDIVELL  212 (296)
T ss_pred             cccCchHhHHHHhcCc---------hHHHHHHHHcCCChhhhhhhhhhhHhHHhcC---------------ChHHHHHHH
Confidence            6889999999999999         8999999999999999888889999999999               899999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      +.++.++|.-|.+|.|||-||++.++.        +|++.|+..|++++..+..|.++++.    ++. +++.+++.
T Consensus       213 L~r~vdVNvyDwNGgTpLlyAvrgnhv--------kcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  213 LTREVDVNVYDWNGGTPLLYAVRGNHV--------KCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             HhcCCCcceeccCCCceeeeeecCChH--------HHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            999999999999999999999999999        99999999999999999999999887    222 45555554

>KOG0514|consensus

Probab=99.79  E-value=1e-19  Score=142.99  Aligned_cols=133  Identities=20%  Similarity=0.155  Sum_probs=119.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcC-CCcccccCCCchHHHHHHhcCC------CC-------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSL-NKLSVASRQNQSLLHLCVNYET------PV-------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g-~~i~~~~~~g~t~L~~a~~~~~------~~-------------   61 (199)
                      |.||.|+|||+..+++         +++|+.||..| ++++.++..|.||+++++...-      .+             
T Consensus       265 DsNGNTALHYsVSHaN---------F~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaK  335 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHAN---------FDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAK  335 (452)
T ss_pred             cCCCCeeeeeeecccc---------hHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchh
Confidence            7899999999999999         99999999988 8899999999999999875522      11             


Q ss_pred             ----CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc-CCCCCCCCCCC
Q psy8420          62 ----DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN-GAHMDTVNNKG  136 (199)
Q Consensus        62 ----~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~-ga~~~~~~~~g  136 (199)
                          |++.|+.|...|..++++.||.+|++||.+|.+|.|+|++|+.+|+.        +++.+||.. ++|....|.+|
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhk--------EivklLLA~p~cd~sLtD~Dg  407 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHK--------EIVKLLLAVPSCDISLTDVDG  407 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChH--------HHHHHHhccCcccceeecCCC
Confidence                78999999999999999999999999999999999999999999999        999999965 89999999999


Q ss_pred             CCcccc----ccchHHHHH
Q psy8420         137 LTPIQA----TTTGVADLI  151 (199)
Q Consensus       137 ~tpl~~----~~~~~~~~l  151 (199)
                      .|+|.+    +..++.-+|
T Consensus       408 STAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  408 STALSIALEAGHREIAVML  426 (452)
T ss_pred             chhhhhHHhcCchHHHHHH
Confidence            999998    445554333

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=1.4e-18  Score=137.85  Aligned_cols=109  Identities=23%  Similarity=0.208  Sum_probs=98.3

Q ss_pred             ccchhhH-HHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc----CCCchHHHHHHhcCCCCCcccccccccCCcHH
Q psy8420           2 EDNLVTS-LYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS----RQNQSLLHLCVNYETPVDTFHTNDVCKFPCAA   76 (199)
Q Consensus         2 ~~~g~t~-Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~----~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~   76 (199)
                      |+.|+|+ ||.|+..+.         .++++.|+++|++++.++    ..|.||||+|+..               ++.+
T Consensus        29 d~~~~~~lL~~A~~~~~---------~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~---------------~~~e   84 (300)
T PHA02884         29 NKICIANILYSSIKFHY---------TDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDC---------------DNDD   84 (300)
T ss_pred             CcCCCCHHHHHHHHcCC---------HHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHc---------------CCHH
Confidence            4566654 566666677         899999999999999874    5899999999999               9999


Q ss_pred             HHHHHHhcCCCCccC-CCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          77 TTKLLIRCGADVNAK-DYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        77 ~~~~Ll~~ga~v~~~-d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      ++++|+++|++++.+ +..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+
T Consensus        85 ivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~--------eivklLL~~GAdin~kd~~G~TpL~~  143 (300)
T PHA02884         85 AAKLLIRYGADVNRYAEEAKITPLYISVLHGCL--------KCLEILLSYGADINIQTNDMVTPIEL  143 (300)
T ss_pred             HHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            999999999999996 46899999999999999        99999999999999999999999998

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=127.50  Aligned_cols=108  Identities=20%  Similarity=0.242  Sum_probs=97.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc-CCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS-RQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~-~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|+||||+|+..++.      +....++.|+..|++++.++ ..|.||||+|+..               ++.+++++
T Consensus        54 d~~g~t~Lh~Aa~~g~~------~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~---------------g~~~iv~~  112 (166)
T PHA02743         54 DHHGRQCTHMVAWYDRA------NAVMKIELLVNMGADINARELGTGNTLLHIAAST---------------KNYELAEW  112 (166)
T ss_pred             CCCCCcHHHHHHHhCcc------CHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHh---------------CCHHHHHH
Confidence            67899999999999871      11345899999999999998 4899999999999               99999999


Q ss_pred             HHh-cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCC
Q psy8420          81 LIR-CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT  138 (199)
Q Consensus        81 Ll~-~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  138 (199)
                      |+. .|++++.++..|.||||+|+..++.        +++++|+++|++++.++..|..
T Consensus       113 Ll~~~gad~~~~d~~g~tpL~~A~~~~~~--------~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        113 LCRQLGVNLGAINYQHETAYHIAYKMRDR--------RMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             HHhccCCCccCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcccCCcc
Confidence            995 7999999999999999999999999        9999999999999999887754

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=147.77  Aligned_cols=131  Identities=16%  Similarity=0.203  Sum_probs=95.4

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      .|.||||+++..+.       +..++++.|+++|+++|.++ .+.||||.|+..+.         ....+..+++++|++
T Consensus        34 ~g~t~l~~~~~~~~-------~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~---------~~~~~~~~iv~~Ll~   96 (494)
T PHA02989         34 RGNSILLLYLKRKD-------VKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNRE---------ITSNKIKKIVKLLLK   96 (494)
T ss_pred             CCCCHHHHHHhcCC-------CChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccC---------cchhhHHHHHHHHHH
Confidence            47888876655432       11789999999999999876 56899998876521         111245678888888


Q ss_pred             cCCCCccCCCCCCcHHHHHHhc---cCcccchhhHHHHHHHHHHcCCCC-CCCCCCCCCcccc------ccchHHHHHHh
Q psy8420          84 CGADVNAKDYQGNTPLHIIATY---ERAISDFQTLHTIILDLTENGAHM-DTVNNKGLTPIQA------TTTGVADLILR  153 (199)
Q Consensus        84 ~ga~v~~~d~~g~tpl~~a~~~---~~~~~~~~~~~~~~~~Ll~~ga~~-~~~~~~g~tpl~~------~~~~~~~~ll~  153 (199)
                      +|+++|.+|..|.||||.|+..   ++.        +++++|+++|+++ +..|..|.||||+      ...++++.|++
T Consensus        97 ~Gadin~~d~~g~tpL~~a~~~~~~~~~--------eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~  168 (494)
T PHA02989         97 FGADINLKTFNGVSPIVCFIYNSNINNC--------DMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS  168 (494)
T ss_pred             CCCCCCCCCCCCCcHHHHHHHhcccCcH--------HHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH
Confidence            8888888888888888876654   456        7888888888888 7788888888876      13467788887


Q ss_pred             hcccch
Q psy8420         154 TLTKIN  159 (199)
Q Consensus       154 ~~~~~~  159 (199)
                      .+++..
T Consensus       169 ~Gadi~  174 (494)
T PHA02989        169 FGVNLF  174 (494)
T ss_pred             cCCCcc
Confidence            766543

>KOG4177|consensus

Probab=99.77  E-value=6.5e-19  Score=157.30  Aligned_cols=139  Identities=24%  Similarity=0.208  Sum_probs=118.0

Q ss_pred             ccchhhHHHHHHHHh-hccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------
Q psy8420           2 EDNLVTSLYLLVILT-KVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~-~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------   61 (199)
                      ++.|+||+|+|+..+ .         .+....++..|+++|.....|.||||.|...|+ ++                  
T Consensus       437 ~~lG~T~lhvaa~~g~~---------~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~  507 (1143)
T KOG4177|consen  437 AKLGYTPLHVAAKKGRY---------LQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKG  507 (1143)
T ss_pred             hhcCCChhhhhhhcccH---------hhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhc
Confidence            567888888888888 4         566667777888888888888888888888887 22                  


Q ss_pred             --------------------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcc
Q psy8420          62 --------------------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAI  109 (199)
Q Consensus        62 --------------------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~  109 (199)
                                                      +.+|++.|+.+|+..+|++|+++|++++.+++.|+||||.|+.+|+. 
T Consensus       508 l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~-  586 (1143)
T KOG4177|consen  508 LTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHN-  586 (1143)
T ss_pred             cchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChH-
Confidence                                            56899999999999999999999999999999999999999999999 


Q ss_pred             cchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420         110 SDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus       110 ~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                             +|+.+|+++|+++|..+.+|.|||++    +.....+.++.....
T Consensus       587 -------~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  587 -------DIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             -------HHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence                   99999999999999999999999998    555666666666544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.77  E-value=3.8e-18  Score=145.11  Aligned_cols=128  Identities=16%  Similarity=0.157  Sum_probs=100.9

Q ss_pred             ccchhhHHHHHHHH-----hhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHH
Q psy8420           2 EDNLVTSLYLLVIL-----TKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAA   76 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~-----~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~   76 (199)
                      |..|.||||.++..     +.         .++++.|++.|+++|.++..|.||||+|+..+            ..++.+
T Consensus        68 d~~g~TpL~~~~~n~~~~~~~---------~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~------------~~~~~~  126 (489)
T PHA02798         68 DNEYSTPLCTILSNIKDYKHM---------LDIVKILIENGADINKKNSDGETPLYCLLSNG------------YINNLE  126 (489)
T ss_pred             CCCCCChHHHHHHhHHhHHhH---------HHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcC------------CcChHH
Confidence            45677888877653     33         67788888888888888888888888877661            113789


Q ss_pred             HHHHHHhcCCCCccCCCCCCcHHHHHHhccC---cccchhhHHHHHHHHHHcCCCCCCCC-CCCCCcccc--------cc
Q psy8420          77 TTKLLIRCGADVNAKDYQGNTPLHIIATYER---AISDFQTLHTIILDLTENGAHMDTVN-NKGLTPIQA--------TT  144 (199)
Q Consensus        77 ~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~---~~~~~~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~--------~~  144 (199)
                      ++++|+++|++++.+|..|.||||+|+..++   .        +++++|++.|++++..+ ..|.||+|.        ..
T Consensus       127 iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~--------~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~  198 (489)
T PHA02798        127 ILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDI--------EIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRID  198 (489)
T ss_pred             HHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchH--------HHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCC
Confidence            9999999999999999999999999998877   7        89999999999998885 578899986        24


Q ss_pred             chHHHHHHhhcccc
Q psy8420         145 TGVADLILRTLTKI  158 (199)
Q Consensus       145 ~~~~~~ll~~~~~~  158 (199)
                      .++++.|++.+...
T Consensus       199 ~~ivk~Li~~Ga~i  212 (489)
T PHA02798        199 ADILKLFVDNGFII  212 (489)
T ss_pred             HHHHHHHHHCCCCc
Confidence            56788888876543

>KOG0510|consensus

Probab=99.77  E-value=2.8e-18  Score=146.44  Aligned_cols=135  Identities=18%  Similarity=0.164  Sum_probs=121.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC----CC----------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET----PV----------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~----~~----------------   61 (199)
                      |++|+||||+||+.++         .+..+.|+..|+++...|.+|..|+|.|+..|.    ++                
T Consensus       151 de~~~TpLh~A~~~~~---------~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~  221 (929)
T KOG0510|consen  151 DENGFTPLHLAARKNK---------VEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFD  221 (929)
T ss_pred             ccCCCchhhHHHhcCh---------HHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccc
Confidence            6789999999999999         787788999999999999999999999998887    22                


Q ss_pred             ---CcccccccccCCcHHHHHHHHhcCCC---------------CccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHH
Q psy8420          62 ---DTFHTNDVCKFPCAATTKLLIRCGAD---------------VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLT  123 (199)
Q Consensus        62 ---~~~~l~~~~~~~~~~~~~~Ll~~ga~---------------v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll  123 (199)
                         +.+|+|.|...|+.++++.+++.|..               +|..|+.|.||||+|+++|.+        ++++.|+
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~--------~svd~Ll  293 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGP--------ESVDNLL  293 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCCh--------hHHHHHH
Confidence               67899999999999999999998754               456789999999999999999        9999999


Q ss_pred             HcCCCCCCCCCCCCCcccc----ccchHHHHHHh
Q psy8420         124 ENGAHMDTVNNKGLTPIQA----TTTGVADLILR  153 (199)
Q Consensus       124 ~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~  153 (199)
                      ..|++++.++.++.||||.    ++-..++.||+
T Consensus       294 ~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  294 GFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             HcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence            9999999999999999998    45566888888

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=8.5e-18  Score=110.69  Aligned_cols=89  Identities=27%  Similarity=0.302  Sum_probs=82.5

Q ss_pred             HHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCC
Q psy8420           9 LYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADV   88 (199)
Q Consensus         9 Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v   88 (199)
                      ||+|+..++         .++++.|++.+.+++.    |.||||+|+..               ++.+++++|++.|+++
T Consensus         1 L~~A~~~~~---------~~~~~~ll~~~~~~~~----~~~~l~~A~~~---------------~~~~~~~~Ll~~g~~~   52 (89)
T PF12796_consen    1 LHIAAQNGN---------LEILKFLLEKGADINL----GNTALHYAAEN---------------GNLEIVKLLLENGADI   52 (89)
T ss_dssp             HHHHHHTTT---------HHHHHHHHHTTSTTTS----SSBHHHHHHHT---------------TTHHHHHHHHHTTTCT
T ss_pred             CHHHHHcCC---------HHHHHHHHHCcCCCCC----CCCHHHHHHHc---------------CCHHHHHHHHHhcccc
Confidence            799999999         9999999999988876    88999999999               9999999999999999


Q ss_pred             ccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCC
Q psy8420          89 NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN  133 (199)
Q Consensus        89 ~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~  133 (199)
                      +.+|..|+||||+|+..++.        +++++|+++|++++.+|
T Consensus        53 ~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   53 NSQDKNGNTALHYAAENGNL--------EIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             T-BSTTSSBHHHHHHHTTHH--------HHHHHHHHTTT-TTSS-
T ss_pred             cccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcC
Confidence            99999999999999999999        99999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0508|consensus

Probab=99.75  E-value=1.4e-18  Score=140.74  Aligned_cols=133  Identities=24%  Similarity=0.275  Sum_probs=114.5

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Ccc
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTF   64 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~   64 (199)
                      -.|-+||+-|+-.||         +++|+.|+++|+++|.......|||-.||.-|+ ++                 |.+
T Consensus        82 IegappLWaAsaAGH---------l~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhT  152 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGH---------LEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHT  152 (615)
T ss_pred             cCCCchhhHHhccCc---------HHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCe
Confidence            357789999999999         999999999999999998888899999999988 44                 778


Q ss_pred             cccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc--
Q psy8420          65 HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA--  142 (199)
Q Consensus        65 ~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~--  142 (199)
                      .+++||.+|+.+++++|++.|+++|.++..|+|+||.++..|+.        +++++|+++|+-+. +|..|-|||..  
T Consensus       153 cLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~v--------divq~Ll~~ga~i~-~d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  153 CLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSV--------DIVQLLLKHGAKID-VDGHGMTPLLLAA  223 (615)
T ss_pred             eEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccH--------HHHHHHHhCCceee-ecCCCCchHHHHh
Confidence            88889999999999999999999999999999999999999999        99999999988774 44559999987  


Q ss_pred             --ccchHHHHHHh
Q psy8420         143 --TTTGVADLILR  153 (199)
Q Consensus       143 --~~~~~~~~ll~  153 (199)
                        +...+++.|+.
T Consensus       224 ~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  224 VTGHTDIVERLLQ  236 (615)
T ss_pred             hhcchHHHHHHhc
Confidence              44556666665

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.75  E-value=8.6e-18  Score=150.66  Aligned_cols=124  Identities=17%  Similarity=0.287  Sum_probs=101.7

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      .+.++||.|+..|+         .+.++.|++.|+++|.+|..|.||||+|+..               |+.+++++|++
T Consensus       524 ~~~~~L~~Aa~~g~---------~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~---------------g~~~~v~~Ll~  579 (823)
T PLN03192        524 NMASNLLTVASTGN---------AALLEELLKAKLDPDIGDSKGRTPLHIAASK---------------GYEDCVLVLLK  579 (823)
T ss_pred             cchhHHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc---------------ChHHHHHHHHh
Confidence            45789999999999         8999999999999999999999999999999               56666666666


Q ss_pred             cCCCCccCCCCCCcHHHH-------------------------------HHhccCcccchhhHHHHHHHHHHcCCCCCCC
Q psy8420          84 CGADVNAKDYQGNTPLHI-------------------------------IATYERAISDFQTLHTIILDLTENGAHMDTV  132 (199)
Q Consensus        84 ~ga~v~~~d~~g~tpl~~-------------------------------a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  132 (199)
                      +|+++|.+|.+|+||||+                               |+..++.        ++++.|+++|++++.+
T Consensus       580 ~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~--------~~v~~Ll~~Gadin~~  651 (823)
T PLN03192        580 HACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDL--------TAMKELLKQGLNVDSE  651 (823)
T ss_pred             cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCH--------HHHHHHHHCCCCCCCC
Confidence            666666666666666554                               5555555        7788899999999999


Q ss_pred             CCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420         133 NNKGLTPIQA----TTTGVADLILRTLTKIN  159 (199)
Q Consensus       133 ~~~g~tpl~~----~~~~~~~~ll~~~~~~~  159 (199)
                      |..|.||||+    ...++++.|++.+++..
T Consensus       652 d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~  682 (823)
T PLN03192        652 DHQGATALQVAMAEDHVDMVRLLIMNGADVD  682 (823)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence            9999999999    55678899998866544

>PHA02917 ankyrin-like protein; Provisional

Probab=99.75  E-value=1.6e-17  Score=144.90  Aligned_cols=131  Identities=21%  Similarity=0.222  Sum_probs=104.8

Q ss_pred             ccchhhHHHHHHHHhhcc--------------------------ccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVI--------------------------KNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCV   55 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~--------------------------~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~   55 (199)
                      +..|.||||+|+..+++.                          .+...++.++++.|++.|+++|.+|..|.||||.++
T Consensus        65 ~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~  144 (661)
T PHA02917         65 NWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYV  144 (661)
T ss_pred             CCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHH
Confidence            567899999999877521                          012234678999999999999999999999999654


Q ss_pred             hcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCC---CC-----------CcHHHHHHh-----------ccCccc
Q psy8420          56 NYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDY---QG-----------NTPLHIIAT-----------YERAIS  110 (199)
Q Consensus        56 ~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~---~g-----------~tpl~~a~~-----------~~~~~~  110 (199)
                      ..+             .++.+++++|+++|++++..|.   .|           .||||+|+.           .++.  
T Consensus       145 a~~-------------~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~--  209 (661)
T PHA02917        145 MTD-------------DPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRP--  209 (661)
T ss_pred             Hcc-------------CCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcH--
Confidence            321             1899999999999999987653   23           599999976           3466  


Q ss_pred             chhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----cc--chHHHHHHh
Q psy8420         111 DFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TT--TGVADLILR  153 (199)
Q Consensus       111 ~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~--~~~~~~ll~  153 (199)
                            +++++|++.|++++.+|..|.||||+    +.  .++++.|++
T Consensus       210 ------eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        210 ------EVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             ------HHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence                  99999999999999999999999999    22  258888875

>KOG0512|consensus

Probab=99.75  E-value=1e-17  Score=119.73  Aligned_cols=102  Identities=20%  Similarity=0.250  Sum_probs=94.4

Q ss_pred             HHHHHHHhhccccCChhHHHHHHHHHHcCCC-cccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCC
Q psy8420           9 LYLLVILTKVIKNISEEEEYRIYKLVFSLNK-LSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGAD   87 (199)
Q Consensus         9 Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~-i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~   87 (199)
                      +.+|+..++         +..|+.|++..++ +|.+|.+|.||||.|+..               ++.+++..|+..|++
T Consensus        67 ~lwaae~nr---------l~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn---------------~h~div~~ll~~gAn  122 (228)
T KOG0512|consen   67 LLWAAEKNR---------LTEVQRLLSEKANHVNTRDEDEYTPLHRAAYN---------------GHLDIVHELLLSGAN  122 (228)
T ss_pred             HHHHHhhcc---------HHHHHHHHHhccccccccccccccHHHHHHhc---------------CchHHHHHHHHccCC
Confidence            456777777         8889999987654 999999999999999999               999999999999999


Q ss_pred             CccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          88 VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        88 v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      ++++...|+||||.||.-.+.        +++.+|+.+|+|+++.....+||||+
T Consensus       123 ~~a~T~~GWTPLhSAckWnN~--------~va~~LLqhgaDVnA~t~g~ltpLhl  169 (228)
T KOG0512|consen  123 KEAKTNEGWTPLHSACKWNNF--------EVAGRLLQHGADVNAQTKGLLTPLHL  169 (228)
T ss_pred             cccccccCccchhhhhcccch--------hHHHHHHhccCcccccccccchhhHH
Confidence            999999999999999999999        99999999999999999999999999

>KOG0512|consensus

Probab=99.74  E-value=5.6e-18  Score=121.03  Aligned_cols=122  Identities=20%  Similarity=0.178  Sum_probs=106.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |+.|+||||=|+..++         .++++.|+..|++++.+...|.||||.||..               .+.+++.+|
T Consensus        94 D~D~YTpLHRAaYn~h---------~div~~ll~~gAn~~a~T~~GWTPLhSAckW---------------nN~~va~~L  149 (228)
T KOG0512|consen   94 DEDEYTPLHRAAYNGH---------LDIVHELLLSGANKEAKTNEGWTPLHSACKW---------------NNFEVAGRL  149 (228)
T ss_pred             ccccccHHHHHHhcCc---------hHHHHHHHHccCCcccccccCccchhhhhcc---------------cchhHHHHH
Confidence            6789999999999999         9999999999999999999999999999998               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHH-HcCCCCCCCCCCCCCcccccc-chHHHHHHhh
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLT-ENGAHMDTVNNKGLTPIQATT-TGVADLILRT  154 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll-~~ga~~~~~~~~g~tpl~~~~-~~~~~~ll~~  154 (199)
                      +++|++||+......||||.++...+.       +..+.+|+ ..+.++...+..+.||++++. .++.+.|.+.
T Consensus       150 LqhgaDVnA~t~g~ltpLhlaa~~rn~-------r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~  217 (228)
T KOG0512|consen  150 LQHGADVNAQTKGLLTPLHLAAGNRNS-------RDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEI  217 (228)
T ss_pred             HhccCcccccccccchhhHHhhcccch-------HHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHH
Confidence            999999999999999999999987655       24556665 668899999999999999944 3455555554

>PHA02730 ankyrin-like protein; Provisional

Probab=99.74  E-value=3.7e-17  Score=140.81  Aligned_cols=165  Identities=11%  Similarity=0.047  Sum_probs=127.6

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|.||||+|+..++      .+..++++.|+++|++++.+|..|.||||+|+..++             ++.+++++|
T Consensus        38 d~~G~TaLh~A~~~~~------~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~-------------~~~eIv~~L   98 (672)
T PHA02730         38 DRRGNNALHCYVSNKC------DTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKY-------------VKSQIVHLL   98 (672)
T ss_pred             CCCCCcHHHHHHHcCC------cCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCC-------------CcHHHHHHH
Confidence            5679999999999862      011799999999999999999999999999998721             379999999


Q ss_pred             HhcCC--CCccCCCCCCcHHHHHHh--ccCcccchhhHHHHHHHHHH-cCCCCCCCCC-----CCCCcccc----ccchH
Q psy8420          82 IRCGA--DVNAKDYQGNTPLHIIAT--YERAISDFQTLHTIILDLTE-NGAHMDTVNN-----KGLTPIQA----TTTGV  147 (199)
Q Consensus        82 l~~ga--~v~~~d~~g~tpl~~a~~--~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~-----~g~tpl~~----~~~~~  147 (199)
                      ++.|+  +++..+.-+.+|++.++.  .++.        +++++|+. .+++++....     .|.+|+++    ...++
T Consensus        99 l~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~--------~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eI  170 (672)
T PHA02730         99 ISSYSNASNELTSNINDFDLYSYMSSDNIDL--------RLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEV  170 (672)
T ss_pred             HhcCCCCCcccccccCCchHHHHHHhcCCcH--------HHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHH
Confidence            99965  458788889999999888  6677        89999996 6788877743     78999998    66788


Q ss_pred             HHHHHhhcccch-h----------HH---HHHHHHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420         148 ADLILRTLTKIN-L----------KC---LAAKVITQNNITYKGLVPHDLESFIELHGTALDK  196 (199)
Q Consensus       148 ~~~ll~~~~~~~-~----------~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  196 (199)
                      +++|++.++... .          .|   +...++.+.. ++.  -..++..+|..||++++.
T Consensus       171 vklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~-~~~--n~~eiv~lLIs~GadIN~  230 (672)
T PHA02730        171 LLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRE-SES--LSKDVIKCLIDNNVSIHG  230 (672)
T ss_pred             HHHHHHcCCcccccccccccccCCccchhHHHHHHhhhh-hhc--cCHHHHHHHHHCCCCCCC
Confidence            999999977752 1          11   0001222211 222  367889999999999874

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.71  E-value=1.7e-17  Score=120.31  Aligned_cols=100  Identities=15%  Similarity=0.122  Sum_probs=90.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC-CCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR-QNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~-~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |+.|.||||+|+..+++.      ..++++.|++.|++++.++. .|.||||+|+..               ++.+++++
T Consensus        52 d~~g~t~Lh~a~~~~~~~------~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~---------------~~~~i~~~  110 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKAD------PQEKLKLLMEWGADINGKERVFGNTPLHIAVYT---------------QNYELATW  110 (154)
T ss_pred             cCCCCEEEEeecccCchh------HHHHHHHHHHcCCCccccCCCCCCcHHHHHHHh---------------CCHHHHHH
Confidence            578999999999998721      13578899999999999984 899999999999               99999999


Q ss_pred             HHh-cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCC
Q psy8420          81 LIR-CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMD  130 (199)
Q Consensus        81 Ll~-~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~  130 (199)
                      |+. .|++++.+|..|.||||+|+..++.        +++++|+++|++.+
T Consensus       111 Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~--------~i~~~Ll~~ga~~~  153 (154)
T PHA02736        111 LCNQPGVNMEILNYAFKTPYYVACERHDA--------KMMNILRAKGAQCK  153 (154)
T ss_pred             HHhCCCCCCccccCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCC
Confidence            998 5999999999999999999999999        99999999999875

>PHA02730 ankyrin-like protein; Provisional

Probab=99.70  E-value=1.4e-16  Score=137.29  Aligned_cols=136  Identities=15%  Similarity=0.085  Sum_probs=107.4

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCC--CcccccCCCchHHHH--HHh-cCCCCCcccccccc-cCCcHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLN--KLSVASRQNQSLLHL--CVN-YETPVDTFHTNDVC-KFPCAA   76 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~--~i~~~~~~g~t~L~~--a~~-~~~~~~~~~l~~~~-~~~~~~   76 (199)
                      ..|.||||+|+..+.-     .-+.++++.|+++|+  +++.+|..|.||||.  ++. .+.       ...+ .....+
T Consensus       376 ~~G~TpLH~Aa~~nnn-----~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~-------~~~~~e~~~~~  443 (672)
T PHA02730        376 TDNNYPLHDYFVNNNN-----IVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNC-------GYHCYETILID  443 (672)
T ss_pred             CCCCcHHHHHHHHcCC-----cchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccc-------cccccchhHHH
Confidence            5789999999987730     001599999999997  689999999999984  222 200       0000 001346


Q ss_pred             HHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCC-CCCCccccc------cchHHH
Q psy8420          77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN-KGLTPIQAT------TTGVAD  149 (199)
Q Consensus        77 ~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~~------~~~~~~  149 (199)
                      ++++|+.+|+++|.+|..|.||||+|+..++.        +++++|+++|++++..+. .|.||+|.+      ..++++
T Consensus       444 ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~--------eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~  515 (672)
T PHA02730        444 VFDILSKYMDDIDMIDNENKTLLYYAVDVNNI--------QFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVD  515 (672)
T ss_pred             HHHHHHhcccchhccCCCCCCHHHHHHHhCCH--------HHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHH
Confidence            79999999999999999999999999999999        999999999999999997 599999983      345899


Q ss_pred             HHHhhcccc
Q psy8420         150 LILRTLTKI  158 (199)
Q Consensus       150 ~ll~~~~~~  158 (199)
                      .|++.+...
T Consensus       516 ~LLs~ga~i  524 (672)
T PHA02730        516 LLLSYHPTL  524 (672)
T ss_pred             HHHHcCCCH
Confidence            999886553

>KOG0505|consensus

Probab=99.69  E-value=3.5e-17  Score=134.31  Aligned_cols=130  Identities=23%  Similarity=0.244  Sum_probs=118.0

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      +-.|.|+||-+|+-.+         .++|+++++.|++||+.|..|.||||.|+..|+ .+                   
T Consensus        70 n~DglTalhq~~id~~---------~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~  140 (527)
T KOG0505|consen   70 NVDGLTALHQACIDDN---------LEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGN  140 (527)
T ss_pred             CCccchhHHHHHhccc---------HHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCC
Confidence            4678999999999999         999999999999999999999999999988877 22                   


Q ss_pred             ---------------------------------------------------------CcccccccccCCcHHHHHHHHhc
Q psy8420          62 ---------------------------------------------------------DTFHTNDVCKFPCAATTKLLIRC   84 (199)
Q Consensus        62 ---------------------------------------------------------~~~~l~~~~~~~~~~~~~~Ll~~   84 (199)
                                                                               |.+.+|.|+..|..++.++|+.+
T Consensus       141 ~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a  220 (527)
T KOG0505|consen  141 MPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQA  220 (527)
T ss_pred             CccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHh
Confidence                                                                     56777888889999999999999


Q ss_pred             CCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHH
Q psy8420          85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVA  148 (199)
Q Consensus        85 ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~  148 (199)
                      |.+++.+|.+||+|||.|+..+..        ++.++|+.+|++++..+..|.||++++..+..
T Consensus       221 g~~~~~~D~dgWtPlHAAA~Wg~~--------~~~elL~~~ga~~d~~t~~g~~p~dv~dee~~  276 (527)
T KOG0505|consen  221 GYSVNIKDYDGWTPLHAAAHWGQE--------DACELLVEHGADMDAKTKMGETPLDVADEEEL  276 (527)
T ss_pred             ccCcccccccCCCcccHHHHhhhH--------hHHHHHHHhhcccchhhhcCCCCccchhhhhH
Confidence            999999999999999999999999        99999999999999999999999999665544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=8e-16  Score=106.21  Aligned_cols=109  Identities=28%  Similarity=0.364  Sum_probs=104.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|.||||.|+..++         .+.++.++..|.+.+.++..|.+|+|.|+..               +..+++++|
T Consensus         4 ~~~g~t~l~~a~~~~~---------~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~---------------~~~~~~~~l   59 (126)
T cd00204           4 DEDGRTPLHLAASNGH---------LEVVKLLLENGADVNAKDNDGRTPLHLAAKN---------------GHLEIVKLL   59 (126)
T ss_pred             CcCCCCHHHHHHHcCc---------HHHHHHHHHcCCCCCccCCCCCcHHHHHHHc---------------CCHHHHHHH
Confidence            5679999999999999         8999999999999899999999999999999               899999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      +..|+.++..+..+.||+|+|+..++.        +++++|++.|.+.+..+..|.||++.
T Consensus        60 l~~~~~~~~~~~~~~~~l~~a~~~~~~--------~~~~~L~~~~~~~~~~~~~~~~~l~~  112 (126)
T cd00204          60 LEKGADVNARDKDGNTPLHLAARNGNL--------DVVKLLLKHGADVNARDKDGRTPLHL  112 (126)
T ss_pred             HHcCCCccccCCCCCCHHHHHHHcCcH--------HHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            999999999999999999999999999        99999999999999999999999998

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.67  E-value=5.5e-16  Score=123.06  Aligned_cols=118  Identities=13%  Similarity=0.154  Sum_probs=99.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccc-cCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVA-SRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~-~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      ++.|.||||+|+..++         .++++.|+++|+++|.+ +..|.||||.|+..               ++.+++++
T Consensus        67 d~~g~TpLh~Aa~~~~---------~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~---------------~~~eivkl  122 (300)
T PHA02884         67 ENSKTNPLIYAIDCDN---------DDAAKLLIRYGADVNRYAEEAKITPLYISVLH---------------GCLKCLEI  122 (300)
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCcCcccCCCCCCHHHHHHHc---------------CCHHHHHH
Confidence            3579999999999999         99999999999999986 45899999999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-ccchHHHHHHhhcc
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-TTTGVADLILRTLT  156 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-~~~~~~~~ll~~~~  156 (199)
                      |+..|++++.+|..|.||+|+|+..++.        .++..+.  |..   .+..+.+|+.. ...++++.|+.+..
T Consensus       123 LL~~GAdin~kd~~G~TpL~~A~~~~~~--------~~~~~~~--~~~---~~~~~~~~~~~~~n~ei~~~Lish~v  186 (300)
T PHA02884        123 LLSYGADINIQTNDMVTPIELALMICNN--------FLAFMIC--DNE---ISNFYKHPKKILINFDILKILVSHFI  186 (300)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHhCCh--------hHHHHhc--CCc---ccccccChhhhhccHHHHHHHHHHHH
Confidence            9999999999999999999999998777        6654443  322   45667788876 45677777777643

>PHA02741 hypothetical protein; Provisional

Probab=99.67  E-value=4.6e-16  Score=114.56  Aligned_cols=101  Identities=14%  Similarity=0.091  Sum_probs=89.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC-CCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR-QNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~-~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|.||||+|+..++..     ...++++.|+..|++++.++. .|.||||+|+..               ++.+++++
T Consensus        57 d~~g~T~Lh~A~~~g~~~-----~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~---------------~~~~iv~~  116 (169)
T PHA02741         57 DDAGQMCIHIAAEKHEAQ-----LAAEIIDHLIELGADINAQEMLEGDTALHLAAHR---------------RDHDLAEW  116 (169)
T ss_pred             CCCCCcHHHHHHHcCChH-----HHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHc---------------CCHHHHHH
Confidence            678999999999998710     013788999999999999985 899999999999               99999999


Q ss_pred             HHh-cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCC
Q psy8420          81 LIR-CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMD  130 (199)
Q Consensus        81 Ll~-~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~  130 (199)
                      |+. .|++++..|..|.||||+|...++.        +++++|+++++...
T Consensus       117 Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~--------~iv~~L~~~~~~~~  159 (169)
T PHA02741        117 LCCQPGIDLHFCNADNKSPFELAIDNEDV--------AMMQILREIVATSR  159 (169)
T ss_pred             HHhCCCCCCCcCCCCCCCHHHHHHHCCCH--------HHHHHHHHHHHHhc
Confidence            998 5999999999999999999999999        99999999876543

>KOG3676|consensus

Probab=99.67  E-value=3e-16  Score=134.36  Aligned_cols=134  Identities=19%  Similarity=0.143  Sum_probs=106.3

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC---CCchHHHHHHhc----CC-CCCcccccccccCCcH
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR---QNQSLLHLCVNY----ET-PVDTFHTNDVCKFPCA   75 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~---~g~t~L~~a~~~----~~-~~~~~~l~~~~~~~~~   75 (199)
                      -|.||||+|..+..         .+.|+.|++.||||+++-.   +....-+..-..    |+ -.|++||..|+.-++.
T Consensus       183 ~GqSaLHiAIv~~~---------~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~  253 (782)
T KOG3676|consen  183 YGQSALHIAIVNRD---------AELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQP  253 (782)
T ss_pred             cCcchHHHHHHhcc---------HHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCH
Confidence            48899999999999         9999999999999997621   000000000000    00 1155555555555999


Q ss_pred             HHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC--CCCCCCCCCCcccc----ccchHHH
Q psy8420          76 ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH--MDTVNNKGLTPIQA----TTTGVAD  149 (199)
Q Consensus        76 ~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~--~~~~~~~g~tpl~~----~~~~~~~  149 (199)
                      +++++|+++|||++++|++|+|.||..+.+...        ++..+++++|++  ...+|++|.|||-+    +++++.+
T Consensus       254 eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~--------~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~  325 (782)
T KOG3676|consen  254 EIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVT--------EMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQ  325 (782)
T ss_pred             HHHHHHHhcCCCCCccccCCChHHHHHHHHHHH--------HHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHH
Confidence            999999999999999999999999999999888        999999999999  99999999999998    6777777


Q ss_pred             HHHhh
Q psy8420         150 LILRT  154 (199)
Q Consensus       150 ~ll~~  154 (199)
                      .+++.
T Consensus       326 ~ile~  330 (782)
T KOG3676|consen  326 HILER  330 (782)
T ss_pred             HHHHh
Confidence            77776

>KOG4177|consensus

Probab=99.67  E-value=1.7e-16  Score=142.09  Aligned_cols=109  Identities=24%  Similarity=0.217  Sum_probs=101.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|+||||.||..|+         +.+|+.|+++|++++.+++.|+||||.||..               |+.+++++|
T Consensus       537 ~~r~~TpLh~A~~~g~---------v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~---------------G~~~i~~LL  592 (1143)
T KOG4177|consen  537 TGRGYTPLHVAVHYGN---------VDLVKFLLEHGADVNAKDKLGYTPLHQAAQQ---------------GHNDIAELL  592 (1143)
T ss_pred             cccccchHHHHHhcCC---------chHHHHhhhCCccccccCCCCCChhhHHHHc---------------ChHHHHHHH
Confidence            3567899999999999         8999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC-----CCCCCCCCCCcccc
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH-----MDTVNNKGLTPIQA  142 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~-----~~~~~~~g~tpl~~  142 (199)
                      +++|+++|..|.+|+|||++|.+.+..        +++++|...++.     ....+..|.+|..+
T Consensus       593 lk~GA~vna~d~~g~TpL~iA~~lg~~--------~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v  650 (1143)
T KOG4177|consen  593 LKHGASVNAADLDGFTPLHIAVRLGYL--------SVVKLLKVVTATPAATDPVKENRKGAVPEDV  650 (1143)
T ss_pred             HHcCCCCCcccccCcchhHHHHHhccc--------chhhHHHhccCccccccchhhhhcccChhhH
Confidence            999999999999999999999999999        999999999998     77778899999988

>KOG0502|consensus

Probab=99.66  E-value=3.3e-17  Score=121.24  Aligned_cols=140  Identities=13%  Similarity=0.039  Sum_probs=103.8

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC----------------CCCccccc
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET----------------PVDTFHTN   67 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~----------------~~~~~~l~   67 (199)
                      .|++++|.++..++         ...+..++.+|+..|..+-.+.+|+.+++..-+                +.|.+|+.
T Consensus        95 ~g~~~~~v~ap~~s---------~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLi  165 (296)
T KOG0502|consen   95 EGWSALLVAAPCGS---------VDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLI  165 (296)
T ss_pred             hhhhhhhhcCCCCC---------cceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhH
Confidence            36666666666555         344444455555555555555555444443322                11444555


Q ss_pred             ccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----c
Q psy8420          68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----T  143 (199)
Q Consensus        68 ~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~  143 (199)
                      ||+.+|++.++++|+..|++++...+...++|..|++.|..        +++++|+.++.|+|..|.+|.|||-+    .
T Consensus       166 WAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggyt--------diV~lLL~r~vdVNvyDwNGgTpLlyAvrgn  237 (296)
T KOG0502|consen  166 WAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYT--------DIVELLLTREVDVNVYDWNGGTPLLYAVRGN  237 (296)
T ss_pred             HHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChH--------HHHHHHHhcCCCcceeccCCCceeeeeecCC
Confidence            55555999999999999999999999999999999999999        99999999999999999999999988    4


Q ss_pred             cchHHHHHHhhcccchh
Q psy8420         144 TTGVADLILRTLTKINL  160 (199)
Q Consensus       144 ~~~~~~~ll~~~~~~~~  160 (199)
                      ...+++.|++.+++.+.
T Consensus       238 hvkcve~Ll~sGAd~t~  254 (296)
T KOG0502|consen  238 HVKCVESLLNSGADVTQ  254 (296)
T ss_pred             hHHHHHHHHhcCCCccc
Confidence            45679999999877554

>KOG4214|consensus

Probab=99.66  E-value=5.6e-16  Score=99.72  Aligned_cols=112  Identities=22%  Similarity=0.167  Sum_probs=98.6

Q ss_pred             HHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCC
Q psy8420           8 SLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGAD   87 (199)
Q Consensus         8 ~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~   87 (199)
                      .+.|+...|.         ++.|+..+..|.++|..- .|++|||+|+-+               |..+++++|+.-|++
T Consensus         5 ~~~W~vkNG~---------~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~---------------GQl~ilefli~iGA~   59 (117)
T KOG4214|consen    5 SVAWNVKNGE---------IDEVKQSVNEGLNVNEIY-GGRTPLHYAADY---------------GQLSILEFLISIGAN   59 (117)
T ss_pred             hHhhhhccCc---------HHHHHHHHHccccHHHHh-CCcccchHhhhc---------------chHHHHHHHHHhccc
Confidence            4556666676         899999999998998655 899999999999               999999999999999


Q ss_pred             CccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHHHHHH
Q psy8420          88 VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLIL  152 (199)
Q Consensus        88 v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~~~ll  152 (199)
                      ++.+|+.|.|||..|.+.|+.        +|+++|++.|++......+|.+.+.....+-+..||
T Consensus        60 i~~kDKygITPLLsAvwEGH~--------~cVklLL~~GAdrt~~~PdG~~~~eate~edIr~LL  116 (117)
T KOG4214|consen   60 IQDKDKYGITPLLSAVWEGHR--------DCVKLLLQNGADRTIHAPDGTALIEATEEEDIRELL  116 (117)
T ss_pred             cCCccccCCcHHHHHHHHhhH--------HHHHHHHHcCcccceeCCCchhHHhhccHHHHHHHh
Confidence            999999999999999999999        999999999999999999998888775555555444

>PHA02792 ankyrin-like protein; Provisional

Probab=99.66  E-value=4.7e-16  Score=132.85  Aligned_cols=144  Identities=13%  Similarity=0.113  Sum_probs=118.3

Q ss_pred             ccchhhHHHHHHHHh-------hccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC---CC----------
Q psy8420           2 EDNLVTSLYLLVILT-------KVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET---PV----------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~-------~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~---~~----------   61 (199)
                      |+.|.||||++....       .         .++++.|+.+|++++.+|.+|.||||+|+...+   ++          
T Consensus       172 ~~~g~t~L~~~i~~~s~~~~~~~---------~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~  242 (631)
T PHA02792        172 DRMGKTVLYYYIITRSQDGYATS---------LDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYS  242 (631)
T ss_pred             CCCCCchHHHHHhhCCcccccCC---------HHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhcccc
Confidence            578999999999998       5         899999999999999999999999999998873   22          


Q ss_pred             --------------------------------------------------------------------------------
Q psy8420          62 --------------------------------------------------------------------------------   61 (199)
Q Consensus        62 --------------------------------------------------------------------------------   61 (199)
                                                                                                      
T Consensus       243 ~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ie  322 (631)
T PHA02792        243 GNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYIN  322 (631)
T ss_pred             ccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHH
Confidence                                                                                            


Q ss_pred             --------Cc-----cc---ccccccCCcHHHHHHHHhcCCCCccCCCCC--CcHHHHHHhccCcccchhhHHHHHHHHH
Q psy8420          62 --------DT-----FH---TNDVCKFPCAATTKLLIRCGADVNAKDYQG--NTPLHIIATYERAISDFQTLHTIILDLT  123 (199)
Q Consensus        62 --------~~-----~~---l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g--~tpl~~a~~~~~~~~~~~~~~~~~~~Ll  123 (199)
                              |.     .+   ++.|+..+..+++++|+++|++++.+|..|  .||||+|......     ...+++++|+
T Consensus       323 iIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~-----~v~~IlklLI  397 (631)
T PHA02792        323 VIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHES-----DVLSILKLCK  397 (631)
T ss_pred             HHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccH-----hHHHHHHHHH
Confidence                    21     11   233667889999999999999999999775  5899987665443     1124678889


Q ss_pred             HcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420         124 ENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKIN  159 (199)
Q Consensus       124 ~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~  159 (199)
                      ++|++++.+|..|.||||+    ...+.++.|++.+++..
T Consensus       398 s~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN  437 (631)
T PHA02792        398 PYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN  437 (631)
T ss_pred             hcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999999999999999998    45678899999876644

>PHA02795 ankyrin-like protein; Provisional

Probab=99.64  E-value=9.4e-16  Score=126.57  Aligned_cols=107  Identities=18%  Similarity=0.088  Sum_probs=89.8

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhc
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRC   84 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~   84 (199)
                      +.|++|.|+..+.         .++++.|+.+|+++|.++..|.||||+|+..               ++.+++++|+++
T Consensus       188 ~~t~l~~a~~~~~---------~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~---------------g~~eiVelLL~~  243 (437)
T PHA02795        188 QYTRGFLVDEPTV---------LEIYKLCIPYIEDINQLDAGGRTLLYRAIYA---------------GYIDLVSWLLEN  243 (437)
T ss_pred             ccchhHHHHhcCH---------HHHHHHHHhCcCCcCcCCCCCCCHHHHHHHc---------------CCHHHHHHHHHC
Confidence            5566777777666         7889999999999999999999999999888               999999999999


Q ss_pred             CCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCC
Q psy8420          85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK  135 (199)
Q Consensus        85 ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~  135 (199)
                      |++++.+|..|.||||+|+..|+...+.....+++++|++.|++++..+..
T Consensus       244 GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~  294 (437)
T PHA02795        244 GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA  294 (437)
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH
Confidence            999999999999999999998853222333338999999999999876543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.62  E-value=6.9e-15  Score=125.79  Aligned_cols=124  Identities=15%  Similarity=0.104  Sum_probs=103.4

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCC--chHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQN--QSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g--~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      +..+++.|+..+.         .++++.|+++|++++.+|..|  .||||.|+..            ......+++++++
T Consensus       339 ~~n~~~~Aa~~gn---------~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n------------~~~~v~~IlklLI  397 (631)
T PHA02792        339 HINKYFQKFDNRD---------PKVVEYILKNGNVVVEDDDNIINIMPLFPTLSI------------HESDVLSILKLCK  397 (631)
T ss_pred             cchHHHHHHHcCC---------HHHHHHHHHcCCchhhhcCCCCChhHHHHHHHh------------ccHhHHHHHHHHH
Confidence            4456788888887         899999999999999998875  6999987766            1112345789999


Q ss_pred             hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccccc--------------chHH
Q psy8420          83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATT--------------TGVA  148 (199)
Q Consensus        83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~--------------~~~~  148 (199)
                      ++|+++|.+|..|.||||+|+..++.        +++++|+++|++++.++..|.||++++.              .+++
T Consensus       398 s~GADIN~kD~~G~TPLh~Aa~~~n~--------eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il  469 (631)
T PHA02792        398 PYIDDINKIDKHGRSILYYCIESHSV--------SLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKIL  469 (631)
T ss_pred             hcCCccccccccCcchHHHHHHcCCH--------HHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHH
Confidence            99999999999999999999999999        9999999999999999999999999832              2446


Q ss_pred             HHHHhhccc
Q psy8420         149 DLILRTLTK  157 (199)
Q Consensus       149 ~~ll~~~~~  157 (199)
                      +.+++.+..
T Consensus       470 ~lLLs~~p~  478 (631)
T PHA02792        470 EIILSKLPT  478 (631)
T ss_pred             HHHHhcCCC
Confidence            777776544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.61  E-value=2e-15  Score=134.34  Aligned_cols=128  Identities=18%  Similarity=0.089  Sum_probs=103.3

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc--------------CCCchHHHHHHhcCCCCCcccccc
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS--------------RQNQSLLHLCVNYETPVDTFHTND   68 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~--------------~~g~t~L~~a~~~~~~~~~~~l~~   68 (199)
                      ..|.||||+|+..++         .++++.|++.|++++.++              ..|.+|||.|+..           
T Consensus       126 ~~G~TpLhlAa~~~~---------~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~-----------  185 (743)
T TIGR00870       126 TPGITALHLAAHRQN---------YEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACL-----------  185 (743)
T ss_pred             CCCCcHHHHHHHhCC---------HHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHh-----------
Confidence            359999999999999         999999999999998653              3688999999988           


Q ss_pred             cccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCccc-chhhHHHHHHHHHHcCCCC-------CCCCCCCCCcc
Q psy8420          69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAIS-DFQTLHTIILDLTENGAHM-------DTVNNKGLTPI  140 (199)
Q Consensus        69 ~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~Ll~~ga~~-------~~~~~~g~tpl  140 (199)
                          ++.+++++|++.|++++.+|..|+||+|+|+..+.... .......+.+.+++.++..       +..|.+|.|||
T Consensus       186 ----~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL  261 (743)
T TIGR00870       186 ----GSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPL  261 (743)
T ss_pred             ----CCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCch
Confidence                99999999999999999999999999999998752110 1111225666777665554       66799999999


Q ss_pred             cc----ccchHHHHHHhh
Q psy8420         141 QA----TTTGVADLILRT  154 (199)
Q Consensus       141 ~~----~~~~~~~~ll~~  154 (199)
                      ++    +..++++.+++.
T Consensus       262 ~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       262 KLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhhhhcCCccHHHHHHHH
Confidence            98    455677888774

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.60  E-value=9.9e-16  Score=136.30  Aligned_cols=120  Identities=20%  Similarity=0.152  Sum_probs=105.2

Q ss_pred             ccchhhHHH-HHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC---C-----------------
Q psy8420           2 EDNLVTSLY-LLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET---P-----------------   60 (199)
Q Consensus         2 ~~~g~t~Lh-~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~---~-----------------   60 (199)
                      |..|.|||| .|+..++         .++++.|+..|+    ++..|.||||.|+..+.   +                 
T Consensus        49 d~~G~t~Lh~~A~~~~~---------~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~  115 (743)
T TIGR00870        49 DRLGRSALFVAAIENEN---------LELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLE  115 (743)
T ss_pred             CccchhHHHHHHHhcCh---------HHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchh
Confidence            567999999 7777777         899999999887    67789999999987322   0                 


Q ss_pred             -----------CCcccccccccCCcHHHHHHHHhcCCCCccCC--------------CCCCcHHHHHHhccCcccchhhH
Q psy8420          61 -----------VDTFHTNDVCKFPCAATTKLLIRCGADVNAKD--------------YQGNTPLHIIATYERAISDFQTL  115 (199)
Q Consensus        61 -----------~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d--------------~~g~tpl~~a~~~~~~~~~~~~~  115 (199)
                                 .|.+|+|.|+..++.+++++|+++|++++.++              ..|.||||.|+..++.       
T Consensus       116 ~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~-------  188 (743)
T TIGR00870       116 LANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSP-------  188 (743)
T ss_pred             hhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCH-------
Confidence                       15688999999999999999999999999753              3689999999999999       


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420         116 HTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus       116 ~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                       +++++|++.|+|++.+|..|+||||+
T Consensus       189 -~iv~lLl~~gadin~~d~~g~T~Lh~  214 (743)
T TIGR00870       189 -SIVALLSEDPADILTADSLGNTLLHL  214 (743)
T ss_pred             -HHHHHHhcCCcchhhHhhhhhHHHHH
Confidence             99999999999999999999999998

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195|consensus

Probab=99.58  E-value=5.4e-15  Score=113.78  Aligned_cols=99  Identities=25%  Similarity=0.360  Sum_probs=92.3

Q ss_pred             cCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhH
Q psy8420          36 SLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL  115 (199)
Q Consensus        36 ~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~  115 (199)
                      ...|.|.-|..|.+|||+|+..               |+..+++.|+.+|+.+|..+....||||.|+.+|+-       
T Consensus        23 tehdln~gddhgfsplhwaake---------------gh~aivemll~rgarvn~tnmgddtplhlaaahghr-------   80 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKE---------------GHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHR-------   80 (448)
T ss_pred             cccccccccccCcchhhhhhhc---------------ccHHHHHHHHhcccccccccCCCCcchhhhhhcccH-------
Confidence            4578888999999999999999               999999999999999999999999999999999999       


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420         116 HTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus       116 ~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                       ++++.|+++.+|+|++|..|.||||+    +...+.+.|+..++-
T Consensus        81 -divqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~  125 (448)
T KOG0195|consen   81 -DIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA  125 (448)
T ss_pred             -HHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccce
Confidence             99999999999999999999999999    677889999988544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=6.8e-14  Score=105.99  Aligned_cols=120  Identities=26%  Similarity=0.260  Sum_probs=107.1

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCc-----HHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPC-----AAT   77 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~-----~~~   77 (199)
                      ..+.+++|.++..+.         ...++.++..|++++.++..|.||||+|+..               ++     .++
T Consensus        71 ~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~---------------~~~~~~~~~~  126 (235)
T COG0666          71 LDGRLPLHSAASKGD---------DKIVKLLLASGADVNAKDADGDTPLHLAALN---------------GNPPEGNIEV  126 (235)
T ss_pred             ccccCHHHHHHHcCc---------HHHHHHHHHcCCCcccccCCCCcHHHHHHhc---------------CCcccchHHH
Confidence            447899999999998         7888999999999999999999999999999               77     999


Q ss_pred             HHHHHhcCC---CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHH
Q psy8420          78 TKLLIRCGA---DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADL  150 (199)
Q Consensus        78 ~~~Ll~~ga---~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~  150 (199)
                      +++|++.|+   ..+.+|..|.||+|+|+..+..        .++.+|++.|++++..+..|.|++++    ........
T Consensus       127 ~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~--------~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  198 (235)
T COG0666         127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA--------DIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKL  198 (235)
T ss_pred             HHHHHHcCCCCCCccccCCCCCchhHHHHHcCch--------HHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHH
Confidence            999999999   6777799999999999999999        99999999999999999999999999    33344445


Q ss_pred             HHhh
Q psy8420         151 ILRT  154 (199)
Q Consensus       151 ll~~  154 (199)
                      +++.
T Consensus       199 l~~~  202 (235)
T COG0666         199 LLDK  202 (235)
T ss_pred             HHhc
Confidence            5554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.55  E-value=3.8e-14  Score=124.35  Aligned_cols=104  Identities=18%  Similarity=0.213  Sum_probs=98.0

Q ss_pred             hHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCC
Q psy8420           7 TSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGA   86 (199)
Q Consensus         7 t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga   86 (199)
                      +.|+.|+..|.         .+.++.|+..|+++|.+|..|.||||+|+..               ++.+++++|+++|+
T Consensus        84 ~~L~~aa~~G~---------~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~---------------g~~eiv~~LL~~Ga  139 (664)
T PTZ00322         84 VELCQLAASGD---------AVGARILLTGGADPNCRDYDGRTPLHIACAN---------------GHVQVVRVLLEFGA  139 (664)
T ss_pred             HHHHHHHHcCC---------HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHC---------------CCHHHHHHHHHCCC
Confidence            46888888888         8999999999999999999999999999999               99999999999999


Q ss_pred             CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc-------CCCCCCCCCCCCCcccc
Q psy8420          87 DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN-------GAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        87 ~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~-------ga~~~~~~~~g~tpl~~  142 (199)
                      +++.+|..|.||||+|+..++.        +++++|+++       |++.+..+..|.+|+..
T Consensus       140 dvn~~d~~G~TpLh~A~~~g~~--------~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~  194 (664)
T PTZ00322        140 DPTLLDKDGKTPLELAEENGFR--------EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLE  194 (664)
T ss_pred             CCCCCCCCCCCHHHHHHHCCcH--------HHHHHHHhCCCcccccCCCCCccccCCCCccch
Confidence            9999999999999999999999        999999998       99999999988888765

>KOG0507|consensus

Probab=99.54  E-value=9.5e-15  Score=124.32  Aligned_cols=121  Identities=20%  Similarity=0.142  Sum_probs=113.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |-+|+|+||.||..|+         ..++++|++..+-++.++..|.+|||+|+..               |+.++++++
T Consensus        46 d~~gfTalhha~Lng~---------~~is~llle~ea~ldl~d~kg~~plhlaaw~---------------g~~e~vkml  101 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQ---------NQISKLLLDYEALLDLCDTKGILPLHLAAWN---------------GNLEIVKML  101 (854)
T ss_pred             CccchhHHHHHHhcCc---------hHHHHHHhcchhhhhhhhccCcceEEehhhc---------------CcchHHHHH
Confidence            5689999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      +..+..+|+.+..|.||||.++++++.        +++.+|+.+|+++..+|+.+.|++++    ...+.+..|++.
T Consensus       102 l~q~d~~na~~~e~~tplhlaaqhgh~--------dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  102 LLQTDILNAVNIENETPLHLAAQHGHL--------EVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             HhcccCCCcccccCcCccchhhhhcch--------HHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            999999999999999999999999999        99999999999999999999999998    566778888776

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=3.6e-14  Score=85.18  Aligned_cols=55  Identities=33%  Similarity=0.498  Sum_probs=33.4

Q ss_pred             HHHcC-CCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHH
Q psy8420          33 LVFSL-NKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHII  102 (199)
Q Consensus        33 ll~~g-~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a  102 (199)
                      |++.| .+++.+|..|.||||+|+..               ++.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~---------------g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARY---------------GHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHH---------------T-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHc---------------CcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 89999999999999999999               999999999999999999999999999986

>KOG0507|consensus

Probab=99.44  E-value=1.6e-13  Score=117.02  Aligned_cols=122  Identities=19%  Similarity=0.186  Sum_probs=109.1

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC--------------------
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV--------------------   61 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~--------------------   61 (199)
                      -.|.||||+|+.+|+         .+++.+|+..|++.-.++..+.|+|-.|+..|. +|                    
T Consensus       113 ~e~~tplhlaaqhgh---------~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~  183 (854)
T KOG0507|consen  113 IENETPLHLAAQHGH---------LEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDI  183 (854)
T ss_pred             ccCcCccchhhhhcc---------hHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCC
Confidence            357788888888888         888888888888888888888888888888887 44                    


Q ss_pred             -----CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCC
Q psy8420          62 -----DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG  136 (199)
Q Consensus        62 -----~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g  136 (199)
                           +.+|+|.|+++++.++++.|++.|.++|..... .|+||-|+..|..        +++.+|++.|.+...+|.+|
T Consensus       184 ~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~-gtalheaalcgk~--------evvr~ll~~gin~h~~n~~~  254 (854)
T KOG0507|consen  184 KRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTED-GTALHEAALCGKA--------EVVRFLLEIGINTHIKNQHG  254 (854)
T ss_pred             CCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccccc-chhhhhHhhcCcc--------hhhhHHHhhccccccccccc
Confidence                 567899999999999999999999999998755 5799999999999        99999999999999999999


Q ss_pred             CCcccc
Q psy8420         137 LTPIQA  142 (199)
Q Consensus       137 ~tpl~~  142 (199)
                      +|.|++
T Consensus       255 qtaldi  260 (854)
T KOG0507|consen  255 QTALDI  260 (854)
T ss_pred             hHHHHH
Confidence            999987

>KOG0514|consensus

Probab=99.44  E-value=3e-13  Score=106.95  Aligned_cols=90  Identities=19%  Similarity=0.183  Sum_probs=84.1

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      ..|.|+|++|..+|+         +++++.||.-|+|||.+|.+|.|+|++|+..               |+.+++++||
T Consensus       338 Q~gQTALMLAVSHGr---------~d~vk~LLacgAdVNiQDdDGSTALMCA~EH---------------GhkEivklLL  393 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGR---------VDMVKALLACGADVNIQDDDGSTALMCAAEH---------------GHKEIVKLLL  393 (452)
T ss_pred             hhcchhhhhhhhcCc---------HHHHHHHHHccCCCccccCCccHHHhhhhhh---------------ChHHHHHHHh
Confidence            568999999999999         9999999999999999999999999999999               9999999999


Q ss_pred             hc-CCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHH
Q psy8420          83 RC-GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTE  124 (199)
Q Consensus        83 ~~-ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~  124 (199)
                      .. ++++...|.+|.|+|.+|...|+.        ++.-+|-.
T Consensus       394 A~p~cd~sLtD~DgSTAl~IAleagh~--------eIa~mlYa  428 (452)
T KOG0514|consen  394 AVPSCDISLTDVDGSTALSIALEAGHR--------EIAVMLYA  428 (452)
T ss_pred             ccCcccceeecCCCchhhhhHHhcCch--------HHHHHHHH
Confidence            86 899999999999999999999999        88766644

>KOG0515|consensus

Probab=99.44  E-value=2.6e-13  Score=111.68  Aligned_cols=96  Identities=26%  Similarity=0.312  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHH
Q psy8420          24 EEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA  103 (199)
Q Consensus        24 ~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~  103 (199)
                      +|++++|+..+..-.|+...+..|.|+||-|+..               |+.++|++||+.|++||+.|++||||||+|+
T Consensus       560 eGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCa---------------ghyeIVkFLi~~ganVNa~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  560 EGELDLVQRIIYEVTDPSQPNDEGITALHNAICA---------------GHYEIVKFLIEFGANVNAADSDGWTPLHCAA  624 (752)
T ss_pred             cchHHHHHHHHHhhcCCCCCCccchhHHhhhhhc---------------chhHHHHHHHhcCCcccCccCCCCchhhhhh
Confidence            4559999999999899999999999999999999               9999999999999999999999999999999


Q ss_pred             hccCcccchhhHHHHHHHHHHcCCCCCCC-CCCCCCcccc
Q psy8420         104 TYERAISDFQTLHTIILDLTENGAHMDTV-NNKGLTPIQA  142 (199)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~-~~~g~tpl~~  142 (199)
                      ..++.        .+...|++.|+-+.+. -.++.|+..-
T Consensus       625 SCNnv--------~~ckqLVe~GaavfAsTlSDmeTa~eK  656 (752)
T KOG0515|consen  625 SCNNV--------PMCKQLVESGAAVFASTLSDMETAAEK  656 (752)
T ss_pred             hcCch--------HHHHHHHhccceEEeeecccccchhhh
Confidence            99999        9999999999876544 3578888875

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.44  E-value=6.1e-13  Score=87.35  Aligned_cols=74  Identities=30%  Similarity=0.416  Sum_probs=64.9

Q ss_pred             CcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHH
Q psy8420          73 PCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVA  148 (199)
Q Consensus        73 ~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~  148 (199)
                      ++.+++++|++.+.+++.    |+||+|+|+..++.        +++++|+++|++++.+|..|.||||+    ...+++
T Consensus         8 ~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    8 GNLEILKFLLEKGADINL----GNTALHYAAENGNL--------EIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             TTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTH--------HHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCH--------HHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999988887    88999999999999        99999999999999999999999998    556677


Q ss_pred             HHHHhhcccc
Q psy8420         149 DLILRTLTKI  158 (199)
Q Consensus       149 ~~ll~~~~~~  158 (199)
                      +.|++.+.+.
T Consensus        76 ~~Ll~~g~~~   85 (89)
T PF12796_consen   76 KLLLEHGADV   85 (89)
T ss_dssp             HHHHHTTT-T
T ss_pred             HHHHHcCCCC
Confidence            7777775543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.43  E-value=7.7e-14  Score=83.75  Aligned_cols=54  Identities=43%  Similarity=0.661  Sum_probs=33.1

Q ss_pred             HHhcC-CCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          81 LIRCG-ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        81 Ll~~g-a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      |+++| ++++.+|..|.||||+|+..++.        +++++|++.|++++.+|..|+||+|+
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~--------~~v~~Ll~~g~d~~~~d~~G~Tpl~~   55 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHS--------EVVRLLLQNGADPNAKDKDGQTPLHY   55 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-H--------HHHHHHHHCT--TT---TTS--HHHH
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcH--------HHHHHHHHCcCCCCCCcCCCCCHHHh
Confidence            56777 99999999999999999999999        99999999999999999999999985

>KOG4214|consensus

Probab=99.43  E-value=5e-13  Score=86.21  Aligned_cols=75  Identities=16%  Similarity=0.025  Sum_probs=69.9

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      .|++|||+|+-+|.         .++++.|+..|++++.+|++|.|||-.|+..               |+..++++|++
T Consensus        33 ggR~plhyAAD~GQ---------l~ilefli~iGA~i~~kDKygITPLLsAvwE---------------GH~~cVklLL~   88 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQ---------LSILEFLISIGANIQDKDKYGITPLLSAVWE---------------GHRDCVKLLLQ   88 (117)
T ss_pred             CCcccchHhhhcch---------HHHHHHHHHhccccCCccccCCcHHHHHHHH---------------hhHHHHHHHHH
Confidence            68999999999999         9999999999999999999999999999999               99999999999


Q ss_pred             cCCCCccCCCCCCcHHHHH
Q psy8420          84 CGADVNAKDYQGNTPLHII  102 (199)
Q Consensus        84 ~ga~v~~~d~~g~tpl~~a  102 (199)
                      .|++-..+...|.+.+-.+
T Consensus        89 ~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   89 NGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             cCcccceeCCCchhHHhhc
Confidence            9999988888887776554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=9.2e-13  Score=78.44  Aligned_cols=54  Identities=13%  Similarity=0.025  Sum_probs=46.0

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      |.||||+|++.|+         .++++.|++.|.+++.+|..|.||||+|+..               ++.+++++|+
T Consensus         1 g~t~lh~A~~~g~---------~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~---------------g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGN---------LEIVKLLLEHGADINAQDEDGRTPLHYAAKN---------------GNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT----------HHHHHHHHHTTSGTT-B-TTS--HHHHHHHT---------------T-HHHHHHHH
T ss_pred             CChHHHHHHHhCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc---------------cCHHHHHHHC
Confidence            6899999999999         9999999999999999999999999999999               9999999886

...

>KOG3676|consensus

Probab=99.37  E-value=1.7e-12  Score=111.60  Aligned_cols=126  Identities=25%  Similarity=0.253  Sum_probs=100.8

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcC----CCcccc-cCCCchHHHHHHhcCCCCCcccccccccCCcHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSL----NKLSVA-SRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAAT   77 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g----~~i~~~-~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~   77 (199)
                      .-|.|.||.|.....      ....++++.|++.-    -++... .+.|.||||.|+.+               .+.++
T Consensus       141 a~GET~Lh~~lL~~~------~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~---------------~~~~~  199 (782)
T KOG3676|consen  141 ATGETLLHKALLNLS------DGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVN---------------RDAEL  199 (782)
T ss_pred             chhhhHHHHHHhcCc------hhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHh---------------ccHHH
Confidence            358899999998654      12246777777632    223322 34899999999999               89999


Q ss_pred             HHHHHhcCCCCccC-----------------------CCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCC
Q psy8420          78 TKLLIRCGADVNAK-----------------------DYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN  134 (199)
Q Consensus        78 ~~~Ll~~ga~v~~~-----------------------d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~  134 (199)
                      |++|++.||||+++                       -+.|+.||..|+..+++        +++++|+++|||++++|.
T Consensus       200 V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~--------eivrlLl~~gAd~~aqDS  271 (782)
T KOG3676|consen  200 VRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQP--------EIVRLLLAHGADPNAQDS  271 (782)
T ss_pred             HHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCH--------HHHHHHHhcCCCCCcccc
Confidence            99999999999875                       13588999999999999        999999999999999999


Q ss_pred             CCCCcccc----ccchHHHHHHhhccc
Q psy8420         135 KGLTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus       135 ~g~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                      .|+|.||+    -..++...+++.++.
T Consensus       272 ~GNTVLH~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  272 NGNTVLHMLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999998    345566677777555

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=2.2e-12  Score=76.76  Aligned_cols=54  Identities=35%  Similarity=0.453  Sum_probs=45.6

Q ss_pred             CchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHH
Q psy8420          47 NQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLT  123 (199)
Q Consensus        47 g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll  123 (199)
                      |.||||+|+..               ++.+++++|++.|++++.+|.+|+||+|+|+..++.        +++++|+
T Consensus         1 g~t~lh~A~~~---------------g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~--------~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARS---------------GNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNI--------DIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHT---------------T-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-H--------HHHHHHH
T ss_pred             CChHHHHHHHh---------------CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCH--------HHHHHHC
Confidence            67899999999               999999999999999999999999999999999999        9999986

...

>KOG0505|consensus

Probab=99.36  E-value=2.1e-12  Score=106.55  Aligned_cols=97  Identities=27%  Similarity=0.326  Sum_probs=92.6

Q ss_pred             hhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHH
Q psy8420          24 EEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA  103 (199)
Q Consensus        24 ~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~  103 (199)
                      .++.+-++.|+..|++++..+.+|.|+||.+|.-               .+.+++++|+++|++||..|..||||+|.|+
T Consensus        50 ~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id---------------~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaa  114 (527)
T KOG0505|consen   50 RGDLEEVRKLLNRGASPNLCNVDGLTALHQACID---------------DNLEMVKFLVENGANVNAQDNEGWTPLHAAA  114 (527)
T ss_pred             cccHHHHHHHhccCCCccccCCccchhHHHHHhc---------------ccHHHHHHHHHhcCCccccccccCCcchhhc
Confidence            3448889999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             hccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420         104 TYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT  143 (199)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~  143 (199)
                      ..++.        .++.+|+.+|+++..+|..|..|.+++
T Consensus       115 scg~~--------~i~~~li~~gA~~~avNsdg~~P~dl~  146 (527)
T KOG0505|consen  115 SCGYL--------NIVEYLIQHGANLLAVNSDGNMPYDLA  146 (527)
T ss_pred             ccccH--------HHHHHHHHhhhhhhhccCCCCCccccc
Confidence            99999        999999999999999999999999983

>KOG1710|consensus

Probab=99.25  E-value=1.1e-10  Score=90.16  Aligned_cols=137  Identities=23%  Similarity=0.189  Sum_probs=105.8

Q ss_pred             HHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCC-CCCCcHHHHHHhc
Q psy8420          27 EYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKD-YQGNTPLHIIATY  105 (199)
Q Consensus        27 ~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d-~~g~tpl~~a~~~  105 (199)
                      .+....|+..--.+|.+|..|+++|..|+..               |+.+.+++|++.|+|||... -.+.||||+|+..
T Consensus        25 t~~a~~LLs~vr~vn~~D~sGMs~LahAayk---------------Gnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   25 TEAALALLSTVRQVNQRDPSGMSVLAHAAYK---------------GNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             HHHHHHHHHHhhhhhccCCCcccHHHHHHhc---------------CcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            5666667776556999999999999999999               99999999999999999864 4578999999999


Q ss_pred             cCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCch
Q psy8420         106 ERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH  181 (199)
Q Consensus       106 ~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (199)
                      |+.        ++..+|++.|+.+..+|.-|+|+-.+    +.++.+..+-+......+.++    .+-.|..-...+|.
T Consensus        90 Gn~--------dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t~~~leyy----t~p~g~~~ep~~Pp  157 (396)
T KOG1710|consen   90 GNQ--------DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHITIDVLEYY----TRPKGYEGEPEYPP  157 (396)
T ss_pred             CCc--------hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccccHHHHHHh----ccccccCCCCCCCH
Confidence            999        99999999999999999999999877    666666554443222222222    22234444456788


Q ss_pred             hHHHHHHHh
Q psy8420         182 DLESFIELH  190 (199)
Q Consensus       182 ~l~~~~~~~  190 (199)
                      +|..|+..-
T Consensus       158 ~La~~~H~~  166 (396)
T KOG1710|consen  158 ELAVFIHSL  166 (396)
T ss_pred             HHHHHHHHH
Confidence            877776654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.25  E-value=6.6e-11  Score=81.33  Aligned_cols=90  Identities=27%  Similarity=0.309  Sum_probs=84.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.||+|.|+..+.         .++++.++..|.+++..+..+.||+|+|+..               ++.+++++|
T Consensus        37 ~~~g~~~l~~a~~~~~---------~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~---------------~~~~~~~~L   92 (126)
T cd00204          37 DNDGRTPLHLAAKNGH---------LEIVKLLLEKGADVNARDKDGNTPLHLAARN---------------GNLDVVKLL   92 (126)
T ss_pred             CCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCccccCCCCCCHHHHHHHc---------------CcHHHHHHH
Confidence            5789999999999999         8999999999999999999999999999999               899999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHH
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLT  123 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll  123 (199)
                      +..|.+++..+..+.||+++|...+..        +++++|+
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~Ll  126 (126)
T cd00204          93 LKHGADVNARDKDGRTPLHLAAKNGHL--------EVVKLLL  126 (126)
T ss_pred             HHcCCCCcccCCCCCCHHHHHHhcCCH--------HHHHHhC
Confidence            999999999999999999999999888        8888764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.21  E-value=7e-11  Score=89.36  Aligned_cols=98  Identities=21%  Similarity=0.173  Sum_probs=88.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCC---CcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLN---KLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT   78 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~---~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~   78 (199)
                      |..|.||||+|+..++.    ..+..++++.|++.|+   ..+.++..|.||||+|+..               ++.+++
T Consensus       103 ~~~g~t~l~~a~~~~~~----~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~---------------~~~~~~  163 (235)
T COG0666         103 DADGDTPLHLAALNGNP----PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN---------------GDADIV  163 (235)
T ss_pred             cCCCCcHHHHHHhcCCc----ccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHc---------------CchHHH
Confidence            67899999999999972    3445699999999999   5666799999999999999               888999


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC
Q psy8420          79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG  126 (199)
Q Consensus        79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g  126 (199)
                      +++++.|++++..+..|.|++++++..+..        .++..++..+
T Consensus       164 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~--------~~~~~l~~~~  203 (235)
T COG0666         164 ELLLEAGADPNSRNSYGVTALDPAAKNGRI--------ELVKLLLDKG  203 (235)
T ss_pred             HHHHhcCCCCcccccCCCcchhhhcccchH--------HHHHHHHhcC
Confidence            999999999999999999999999999999        9999999876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.17  E-value=1.4e-10  Score=102.11  Aligned_cols=74  Identities=32%  Similarity=0.504  Sum_probs=70.4

Q ss_pred             CcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHH
Q psy8420          73 PCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVA  148 (199)
Q Consensus        73 ~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~  148 (199)
                      |..+.+++|++.|+++|.+|..|+||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...+++
T Consensus        93 G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~--------eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         93 GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHV--------QVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCH--------HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            999999999999999999999999999999999999        99999999999999999999999999    556788


Q ss_pred             HHHHhh
Q psy8420         149 DLILRT  154 (199)
Q Consensus       149 ~~ll~~  154 (199)
                      +.|++.
T Consensus       165 ~~Ll~~  170 (664)
T PTZ00322        165 QLLSRH  170 (664)
T ss_pred             HHHHhC
Confidence            888876

>KOG4369|consensus

Probab=99.16  E-value=5.5e-11  Score=105.44  Aligned_cols=140  Identities=17%  Similarity=0.205  Sum_probs=120.4

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------Cc
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------DT   63 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------~~   63 (199)
                      -|-.|+|.+||..|+         .+.+++|+.+|+++..+|..|.+||..|+..|| .+                  ++
T Consensus       755 ~n~~t~LT~acaggh---------~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkd  825 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGH---------REEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKD  825 (2131)
T ss_pred             ccccccccccccCcc---------HHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccC
Confidence            356799999999999         999999999999999999999999999999988 22                  67


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCC--CCCCCCccc
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV--NNKGLTPIQ  141 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~--~~~g~tpl~  141 (199)
                      +++..+|.-+..+++++||..|++-..++....|||..|...|..        +++..|+..|+.++.+  .+.|-.||+
T Consensus       826 t~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~--------~iI~~llS~GseInSrtgSklgisPLm  897 (2131)
T KOG4369|consen  826 TMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYT--------KIIHALLSSGSEINSRTGSKLGISPLM  897 (2131)
T ss_pred             ceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchH--------HHHHHHhhcccccccccccccCcchhh
Confidence            899999999999999999999999999999999999999999999        9999999999666544  678999999


Q ss_pred             c----ccchHHHHHHhhcccch
Q psy8420         142 A----TTTGVADLILRTLTKIN  159 (199)
Q Consensus       142 ~----~~~~~~~~ll~~~~~~~  159 (199)
                      +    +...-...+++.+.+++
T Consensus       898 latmngh~~at~~ll~~gsdiN  919 (2131)
T KOG4369|consen  898 LATMNGHQAATLSLLQPGSDIN  919 (2131)
T ss_pred             hhhhccccHHHHHHhcccchhc
Confidence            8    34445556666544433

>KOG1710|consensus

Probab=99.10  E-value=3.6e-10  Score=87.28  Aligned_cols=83  Identities=12%  Similarity=0.003  Sum_probs=78.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccc-ccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV-ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~-~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |.+|.|+|.-|+..|+         .+.++++++.|+|+|. ++..+.||||.|+..               |+.+++++
T Consensus        42 D~sGMs~LahAaykGn---------l~~v~lll~~gaDvN~~qhg~~YTpLmFAALS---------------Gn~dvcrl   97 (396)
T KOG1710|consen   42 DPSGMSVLAHAAYKGN---------LTLVELLLELGADVNDKQHGTLYTPLMFAALS---------------GNQDVCRL   97 (396)
T ss_pred             CCCcccHHHHHHhcCc---------HHHHHHHHHhCCCcCcccccccccHHHHHHHc---------------CCchHHHH
Confidence            7799999999999999         9999999999999996 455899999999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCc
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERA  108 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~  108 (199)
                      |++.|+.....++-|+|+-..|+..|+.
T Consensus        98 lldaGa~~~~vNsvgrTAaqmAAFVG~H  125 (396)
T KOG1710|consen   98 LLDAGARMYLVNSVGRTAAQMAAFVGHH  125 (396)
T ss_pred             HHhccCccccccchhhhHHHHHHHhcch
Confidence            9999999999999999999999999888

>KOG4369|consensus

Probab=98.97  E-value=1.4e-10  Score=103.00  Aligned_cols=142  Identities=16%  Similarity=0.217  Sum_probs=95.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccc-ccCCCchHHHHHHhcCC-CC-----------------C
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV-ASRQNQSLLHLCVNYET-PV-----------------D   62 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~-~~~~g~t~L~~a~~~~~-~~-----------------~   62 (199)
                      |+.|++||-+|+-.|+         +.+|+.|+.+-+++.. .|..+.|+|.+||..|. ++                 +
T Consensus       787 dkkgf~plImaatagh---------~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsD  857 (2131)
T KOG4369|consen  787 DKKGFVPLIMAATAGH---------ITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSD  857 (2131)
T ss_pred             ccccchhhhhhcccCc---------hHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhh
Confidence            6778888888888888         8888888888788874 45678888888888877 33                 3


Q ss_pred             cccccccccCCcHHHHHHHHhcCCCCccCC--CCCCcHHHHH----------------------------------Hhcc
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCGADVNAKD--YQGNTPLHII----------------------------------ATYE  106 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d--~~g~tpl~~a----------------------------------~~~~  106 (199)
                      -+|+..+..-+..+++..|+.+|+.||.+.  +.|.+||..+                                  +.+|
T Consensus       858 ytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqg  937 (2131)
T KOG4369|consen  858 YTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQG  937 (2131)
T ss_pred             cCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccC
Confidence            456666777777777777777777776653  2344455444                                  4455


Q ss_pred             CcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchh
Q psy8420         107 RAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINL  160 (199)
Q Consensus       107 ~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~  160 (199)
                      +.        +++.+||.+.+++..+-..|.|||+-    +..+.-..|+..+++.++
T Consensus       938 r~--------evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  938 RP--------EVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             cc--------hHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccccc
Confidence            55        66666666666666666666777665    333334555555544433

>KOG0515|consensus

Probab=98.93  E-value=1.8e-09  Score=89.46  Aligned_cols=92  Identities=16%  Similarity=0.019  Sum_probs=78.0

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.|+||-|.-.||         .++|+.||..|++||..|.+|+||||+|+.-               ++..+|+.|
T Consensus       580 NdEGITaLHNAiCagh---------yeIVkFLi~~ganVNa~DSdGWTPLHCAASC---------------Nnv~~ckqL  635 (752)
T KOG0515|consen  580 NDEGITALHNAICAGH---------YEIVKFLIEFGANVNAADSDGWTPLHCAASC---------------NNVPMCKQL  635 (752)
T ss_pred             CccchhHHhhhhhcch---------hHHHHHHHhcCCcccCccCCCCchhhhhhhc---------------CchHHHHHH
Confidence            4579999999999999         9999999999999999999999999999998               899999999


Q ss_pred             HhcCCCCccCC-CCCCcHHHHHH--hccCcccchhhHHHHHHHHHHc
Q psy8420          82 IRCGADVNAKD-YQGNTPLHIIA--TYERAISDFQTLHTIILDLTEN  125 (199)
Q Consensus        82 l~~ga~v~~~d-~~g~tpl~~a~--~~~~~~~~~~~~~~~~~~Ll~~  125 (199)
                      ++.|+-|=+.. +++.|+.--+-  ..|..        +|.++|-..
T Consensus       636 Ve~GaavfAsTlSDmeTa~eKCee~eeGY~--------~CsqyL~~v  674 (752)
T KOG0515|consen  636 VESGAAVFASTLSDMETAAEKCEEMEEGYD--------QCSQYLYGV  674 (752)
T ss_pred             HhccceEEeeecccccchhhhcchhhhhHH--------HHHHHHHHH
Confidence            99998776544 56778876543  34555        888888653

>KOG0783|consensus

Probab=98.85  E-value=1.2e-09  Score=94.65  Aligned_cols=90  Identities=23%  Similarity=0.315  Sum_probs=81.6

Q ss_pred             HHHHHHc-C-CCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCC-CCCcHHHHHHhcc
Q psy8420          30 IYKLVFS-L-NKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDY-QGNTPLHIIATYE  106 (199)
Q Consensus        30 ~~~ll~~-g-~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~-~g~tpl~~a~~~~  106 (199)
                      ++-++.. + --+|.+|..|+++||.++..               +..++++.|+.+|++++.+|. .|+||||-|...|
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~---------------~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG   97 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSE---------------NKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYG   97 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeecc---------------chhHHHHHHHhcCceeeeccccccchHhhHhhhhc
Confidence            5666653 3 33788999999999999998               899999999999999999996 6999999999999


Q ss_pred             CcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420         107 RAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus       107 ~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      ++        +|+-+|+++|+.+...|.+|.+||+.
T Consensus        98 ~i--------dca~lLL~~g~SL~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   98 NI--------DCASLLLSKGRSLRIKDKEGLSPLQF  125 (1267)
T ss_pred             hH--------HHHHHHHhcCCceEEecccCCCHHHH
Confidence            99        99999999999999999999999987

>KOG0783|consensus

Probab=98.79  E-value=3.8e-09  Score=91.65  Aligned_cols=80  Identities=21%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC-CCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR-QNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~-~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|+|+||+++..++         ..++++|+++|+++..+|+ .|.||||.|..+               |+++++-+
T Consensus        49 D~~GR~alH~~~S~~k---------~~~l~wLlqhGidv~vqD~ESG~taLHRaiyy---------------G~idca~l  104 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENK---------NSFLRWLLQHGIDVFVQDEESGYTALHRAIYY---------------GNIDCASL  104 (1267)
T ss_pred             Hhhccceeeeeeccch---------hHHHHHHHhcCceeeeccccccchHhhHhhhh---------------chHHHHHH
Confidence            6789999999999999         8999999999999999998 799999999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhc
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATY  105 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~  105 (199)
                      |+.+|+....+|++|.+||...++.
T Consensus       105 LL~~g~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  105 LLSKGRSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             HHhcCCceEEecccCCCHHHHHhhc
Confidence            9999999999999999999988873

>PF13606 Ank_3: Ankyrin repeat

Probab=98.76  E-value=9.2e-09  Score=53.28  Aligned_cols=30  Identities=17%  Similarity=-0.096  Sum_probs=28.1

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccc
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV   42 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~   42 (199)
                      +|+||||+||..|+         .++++.|++.|+++|.
T Consensus         1 ~G~T~Lh~A~~~g~---------~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGN---------IEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCC---------HHHHHHHHHcCCCCCC
Confidence            68999999999999         9999999999999873

>KOG0506|consensus

Probab=98.73  E-value=1.4e-08  Score=83.29  Aligned_cols=92  Identities=17%  Similarity=0.249  Sum_probs=84.7

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      .+..++++|+..|.         +..++.+.-.|.|++.+|++.+|+||.|+..               |+.+++++|+.
T Consensus       505 ~~~i~~~~aa~~GD---------~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE---------------G~v~v~kfl~~  560 (622)
T KOG0506|consen  505 DTVINVMYAAKNGD---------LSALRRFALQGMDLETKDYDDRTALHVAAAE---------------GHVEVVKFLLN  560 (622)
T ss_pred             cchhhhhhhhhcCC---------HHHHHHHHHhcccccccccccchhheeeccc---------------CceeHHHHHHH
Confidence            45678899999998         8999999999999999999999999999999               99999999998


Q ss_pred             -cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCC
Q psy8420          84 -CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA  127 (199)
Q Consensus        84 -~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga  127 (199)
                       .+.+++.+|+||+|||.-|...++.        +++++|-++..
T Consensus       561 ~~kv~~~~kDRw~rtPlDdA~~F~h~--------~v~k~L~~~~~  597 (622)
T KOG0506|consen  561 ACKVDPDPKDRWGRTPLDDAKHFKHK--------EVVKLLEEAQY  597 (622)
T ss_pred             HHcCCCChhhccCCCcchHhHhcCcH--------HHHHHHHHHhc
Confidence             5999999999999999999999999        99999987643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.72  E-value=1.5e-08  Score=53.74  Aligned_cols=33  Identities=9%  Similarity=-0.099  Sum_probs=30.8

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR   45 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~   45 (199)
                      +|.||||+|+..++         .++++.|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~---------~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGH---------PDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTC---------HHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHH---------HHHHHHHHHCcCCCCCCCC
Confidence            58999999999999         9999999999999998763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=98.69  E-value=9.6e-08  Score=78.80  Aligned_cols=85  Identities=20%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             HHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC-CCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCC
Q psy8420           8 SLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR-QNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGA   86 (199)
Q Consensus         8 ~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~-~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga   86 (199)
                      .||-.++-+.         .+..-.||..|+++|..+. .|.||||.|+..               |...-+++|+-+||
T Consensus       136 QLhasvRt~n---------let~LRll~lGA~~N~~hpekg~TpLHvAAk~---------------Gq~~Q~ElL~vYGA  191 (669)
T KOG0818|consen  136 QLHSSVRTGN---------LETCLRLLSLGAQANFFHPEKGNTPLHVAAKA---------------GQILQAELLAVYGA  191 (669)
T ss_pred             HHHHHhhccc---------HHHHHHHHHcccccCCCCcccCCchhHHHHhc---------------cchhhhhHHhhccC
Confidence            5777888887         7887788999999998776 699999999999               89999999999999


Q ss_pred             CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHH
Q psy8420          87 DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTE  124 (199)
Q Consensus        87 ~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~  124 (199)
                      +++..|.+|.||+.+|-..|+.        ++.+.|++
T Consensus       192 D~~a~d~~GmtP~~~AR~~gH~--------~laeRl~e  221 (669)
T KOG0818|consen  192 DPGAQDSSGMTPVDYARQGGHH--------ELAERLVE  221 (669)
T ss_pred             CCCCCCCCCCcHHHHHHhcCch--------HHHHHHHH
Confidence            9999999999999999999888        66555554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.64  E-value=4.9e-08  Score=51.73  Aligned_cols=33  Identities=36%  Similarity=0.560  Sum_probs=30.9

Q ss_pred             CCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCC
Q psy8420          94 QGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN  134 (199)
Q Consensus        94 ~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~  134 (199)
                      +|+||||+|+..++.        +++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~--------~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHP--------DIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCH--------HHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHH--------HHHHHHHHCcCCCCCCCC
Confidence            489999999999999        999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.64  E-value=4.9e-08  Score=50.52  Aligned_cols=30  Identities=37%  Similarity=0.475  Sum_probs=27.6

Q ss_pred             CCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCcc
Q psy8420          46 QNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNA   90 (199)
Q Consensus        46 ~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~   90 (199)
                      +|+||||+|+..               ++.+++++|+++|+++|.
T Consensus         1 ~G~T~Lh~A~~~---------------g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASN---------------GNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHh---------------CCHHHHHHHHHcCCCCCC
Confidence            488999999999               999999999999999974

>KOG0522|consensus

Probab=98.55  E-value=2.1e-07  Score=77.38  Aligned_cols=85  Identities=24%  Similarity=0.328  Sum_probs=68.8

Q ss_pred             HHHHHHHHhhccccCChhHHHHHHH-HH-HcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcC
Q psy8420           8 SLYLLVILTKVIKNISEEEEYRIYK-LV-FSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCG   85 (199)
Q Consensus         8 ~Lh~a~~~~~~~~~~~~~~~~~~~~-ll-~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~g   85 (199)
                      |+|++.....         .+-+.. +. +.+..++.+|..|.||||+|+..               ++.+.++.|+..|
T Consensus        23 ~lh~~~~~~~---------~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~L---------------g~~~~a~~Ll~a~   78 (560)
T KOG0522|consen   23 PLHWAVVTTD---------SDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRL---------------GHVEAARILLSAG   78 (560)
T ss_pred             ccchhhhccc---------hhhHHHHHhhhhhceeccccCCCCccHHHHHHh---------------cCHHHHHHHHhcC
Confidence            3677766665         333333 32 24677889999999999999999               9999999999999


Q ss_pred             CCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHH
Q psy8420          86 ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTE  124 (199)
Q Consensus        86 a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~  124 (199)
                      +++..++..|++|||-|+..|+.        +++..++.
T Consensus        79 Adv~~kN~~gWs~L~EAv~~g~~--------q~i~~vlr  109 (560)
T KOG0522|consen   79 ADVSIKNNEGWSPLHEAVSTGNE--------QIITEVLR  109 (560)
T ss_pred             CCccccccccccHHHHHHHcCCH--------HHHHHHHH
Confidence            99999999999999999999988        66655543

>KOG0705|consensus

Probab=98.53  E-value=2.5e-07  Score=77.70  Aligned_cols=84  Identities=23%  Similarity=0.228  Sum_probs=72.2

Q ss_pred             ChhHHHHHHHHHHcCCC--ccc--ccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcH
Q psy8420          23 SEEEEYRIYKLVFSLNK--LSV--ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTP   98 (199)
Q Consensus        23 ~~~~~~~~~~ll~~g~~--i~~--~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tp   98 (199)
                      ..++...+-+|+.+|..  +|.  .+..|.|+||+||..               +++.+.++|+=+|+++-++|.+|+|+
T Consensus       633 ~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~---------------gnVvl~QLLiWyg~dv~~rda~g~t~  697 (749)
T KOG0705|consen  633 AAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARK---------------GNVVLAQLLIWYGVDVMARDAHGRTA  697 (749)
T ss_pred             HHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhh---------------cchhHHHHHHHhCccceecccCCchh
Confidence            34557778888888844  443  344789999999999               99999999999999999999999999


Q ss_pred             HHHHHhccCcccchhhHHHHHHHHHHcCCCC
Q psy8420          99 LHIIATYERAISDFQTLHTIILDLTENGAHM  129 (199)
Q Consensus        99 l~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~  129 (199)
                      |.||-+.+..        +|++.|+.+|.-.
T Consensus       698 l~yar~a~sq--------ec~d~llq~gcp~  720 (749)
T KOG0705|consen  698 LFYARQAGSQ--------ECIDVLLQYGCPD  720 (749)
T ss_pred             hhhHhhcccH--------HHHHHHHHcCCCc
Confidence            9999999999        9999999998754

>KOG0818|consensus

Probab=98.52  E-value=3.3e-07  Score=75.74  Aligned_cols=76  Identities=25%  Similarity=0.293  Sum_probs=67.0

Q ss_pred             cCCcHHHHHHHHhcCCCCccCCC-CCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccc
Q psy8420          71 KFPCAATTKLLIRCGADVNAKDY-QGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTT  145 (199)
Q Consensus        71 ~~~~~~~~~~Ll~~ga~v~~~d~-~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~  145 (199)
                      +.++.+++-.||..||++|-.+. .|.||||.|+..|+.        .-+++|+-||||+...|..|.||+.+    +..
T Consensus       142 Rt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~--------~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  142 RTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQI--------LQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             hcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccch--------hhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            33899999999999999998764 689999999999999        99999999999999999999999999    455


Q ss_pred             hHHHHHHhh
Q psy8420         146 GVADLILRT  154 (199)
Q Consensus       146 ~~~~~ll~~  154 (199)
                      +..+.|++.
T Consensus       214 ~laeRl~e~  222 (669)
T KOG0818|consen  214 ELAERLVEI  222 (669)
T ss_pred             HHHHHHHHH
Confidence            667777665

>KOG0705|consensus

Probab=98.45  E-value=2.9e-07  Score=77.24  Aligned_cols=63  Identities=13%  Similarity=0.059  Sum_probs=58.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|+|+||+||+.|+         +...++|+..|+|+..+|..|.|+|.||-..               +..+++..|
T Consensus       658 ~~~grt~LHLa~~~gn---------Vvl~QLLiWyg~dv~~rda~g~t~l~yar~a---------------~sqec~d~l  713 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGN---------VVLAQLLIWYGVDVMARDAHGRTALFYARQA---------------GSQECIDVL  713 (749)
T ss_pred             CCCCcchhhhhhhhcc---------hhHHHHHHHhCccceecccCCchhhhhHhhc---------------ccHHHHHHH
Confidence            4578999999999999         8999999999999999999999999999999               999999999


Q ss_pred             HhcCCCC
Q psy8420          82 IRCGADV   88 (199)
Q Consensus        82 l~~ga~v   88 (199)
                      +.+|+.-
T Consensus       714 lq~gcp~  720 (749)
T KOG0705|consen  714 LQYGCPD  720 (749)
T ss_pred             HHcCCCc
Confidence            9999853

>KOG0511|consensus

Probab=98.29  E-value=3.6e-06  Score=67.70  Aligned_cols=74  Identities=22%  Similarity=0.143  Sum_probs=62.2

Q ss_pred             hhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcC
Q psy8420           6 VTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCG   85 (199)
Q Consensus         6 ~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~g   85 (199)
                      +--|-.||+.|.         .+.++.|++.|.++|+.|.+...||.+|+.-               ||..++++|+++|
T Consensus        37 f~elceacR~GD---------~d~v~~LVetgvnVN~vD~fD~spL~lAsLc---------------GHe~vvklLLenG   92 (516)
T KOG0511|consen   37 FGELCEACRAGD---------VDRVRYLVETGVNVNAVDRFDSSPLYLASLC---------------GHEDVVKLLLENG   92 (516)
T ss_pred             hHHHHHHhhccc---------HHHHHHHHHhCCCcchhhcccccHHHHHHHc---------------CcHHHHHHHHHcC
Confidence            445778888888         9999999999999999999999999999999               9999999999999


Q ss_pred             CCCccCCCCCCcHHHHHHh
Q psy8420          86 ADVNAKDYQGNTPLHIIAT  104 (199)
Q Consensus        86 a~v~~~d~~g~tpl~~a~~  104 (199)
                      |-......+|... ||++.
T Consensus        93 AiC~rdtf~G~RC-~YgaL  110 (516)
T KOG0511|consen   93 AICSRDTFDGDRC-HYGAL  110 (516)
T ss_pred             CcccccccCcchh-hhhhh
Confidence            9777766677654 34433

>KOG0782|consensus

Probab=98.28  E-value=2.9e-06  Score=71.45  Aligned_cols=87  Identities=23%  Similarity=0.335  Sum_probs=50.4

Q ss_pred             HHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCC--CccCCCCCCcHHHHHHhccC
Q psy8420          30 IYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGAD--VNAKDYQGNTPLHIIATYER  107 (199)
Q Consensus        30 ~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~--v~~~d~~g~tpl~~a~~~~~  107 (199)
                      ++..-..|.++-.++.+-.+.||+|+..               |+.+++++++++|-.  .+..|..|.|+||.|+.+++
T Consensus       882 lqE~h~~gg~ll~~~~~~~sllh~a~~t---------------g~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  882 LQETHLNGGSLLIQGPDHCSLLHYAAKT---------------GNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHhcCCceEeeCcchhhHHHHHHhc---------------CChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            3444445555555555555666666666               566666666666532  34445556666666666655


Q ss_pred             cccchhhHHHHHHHHHHcCCCCCCCCCCCCCc
Q psy8420         108 AISDFQTLHTIILDLTENGAHMDTVNNKGLTP  139 (199)
Q Consensus       108 ~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp  139 (199)
                      -        .+-++|++.|+.+...|..|.||
T Consensus       947 r--------~vc~~lvdagasl~ktd~kg~tp  970 (1004)
T KOG0782|consen  947 R--------AVCQLLVDAGASLRKTDSKGKTP  970 (1004)
T ss_pred             h--------HHHHHHHhcchhheecccCCCCh
Confidence            5        55666666666666666666665

>KOG0521|consensus

Probab=98.27  E-value=1.2e-06  Score=77.97  Aligned_cols=81  Identities=22%  Similarity=0.174  Sum_probs=60.6

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      .|.|+||.|+..+.         .-.++.|+..|+++|.+|..|.+|+|.+...               |+.....++++
T Consensus       655 ~~~s~lh~a~~~~~---------~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~---------------g~~~~~~~ll~  710 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGD---------SGAVELLLQNGADVNALDSKGRTPLHHATAS---------------GHTSIACLLLK  710 (785)
T ss_pred             cccchhhhhhccch---------HHHHHHHHhcCCcchhhhccCCCcchhhhhh---------------cccchhhhhcc
Confidence            46777777777777         6667777777777777777777777777777               77777777777


Q ss_pred             cCCCCccCCCCCCcHHHHHHhccCc
Q psy8420          84 CGADVNAKDYQGNTPLHIIATYERA  108 (199)
Q Consensus        84 ~ga~v~~~d~~g~tpl~~a~~~~~~  108 (199)
                      +|++.++.+..|.+|+.+|....+.
T Consensus       711 ~~a~~~a~~~~~~~~l~~a~~~~~~  735 (785)
T KOG0521|consen  711 RGADPNAFDPDGKLPLDIAMEAANA  735 (785)
T ss_pred             ccccccccCccCcchhhHHhhhccc
Confidence            7777777777777777777665444

>KOG0521|consensus

Probab=98.26  E-value=1.2e-06  Score=78.04  Aligned_cols=73  Identities=27%  Similarity=0.347  Sum_probs=66.6

Q ss_pred             CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccc
Q psy8420          62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ  141 (199)
Q Consensus        62 ~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  141 (199)
                      |.+++|.++..+..-.+++|++.|+++|..|..|++|+|.+...|+.        ..+..|+++|+++++.+.+|.+|++
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~--------~~~~~ll~~~a~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHT--------SIACLLLKRGADPNAFDPDGKLPLD  727 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhccc--------chhhhhccccccccccCccCcchhh
Confidence            45555555555999999999999999999999999999999999999        9999999999999999999999999


Q ss_pred             c
Q psy8420         142 A  142 (199)
Q Consensus       142 ~  142 (199)
                      +
T Consensus       728 ~  728 (785)
T KOG0521|consen  728 I  728 (785)
T ss_pred             H
Confidence            8

>KOG0782|consensus

Probab=98.25  E-value=2.8e-06  Score=71.59  Aligned_cols=86  Identities=17%  Similarity=0.152  Sum_probs=77.3

Q ss_pred             HHHHHHHHhhccccCChhHHHHHHHHHHcCCC--cccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcC
Q psy8420           8 SLYLLVILTKVIKNISEEEEYRIYKLVFSLNK--LSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCG   85 (199)
Q Consensus         8 ~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~--i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~g   85 (199)
                      .||+|+.-|.         -++|+.++.+|..  ++..+..|+|+||.|+..               ++..++++|++.|
T Consensus       902 llh~a~~tg~---------~eivkyildh~p~elld~~de~get~lhkaa~~---------------~~r~vc~~lvdag  957 (1004)
T KOG0782|consen  902 LLHYAAKTGN---------GEIVKYILDHGPSELLDMADETGETALHKAACQ---------------RNRAVCQLLVDAG  957 (1004)
T ss_pred             HHHHHHhcCC---------hHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh---------------cchHHHHHHHhcc
Confidence            0588888888         8999999999843  677789999999999988               8999999999999


Q ss_pred             CCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc
Q psy8420          86 ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN  125 (199)
Q Consensus        86 a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~  125 (199)
                      +..-..|..|.||-.-|...+.+        ++..+|-.+
T Consensus       958 asl~ktd~kg~tp~eraqqa~d~--------dlaayle~r  989 (1004)
T KOG0782|consen  958 ASLRKTDSKGKTPQERAQQAGDP--------DLAAYLESR  989 (1004)
T ss_pred             hhheecccCCCChHHHHHhcCCc--------hHHHHHhhh
Confidence            99999999999999999999999        999998765

>KOG2384|consensus

Probab=98.14  E-value=1e-05  Score=59.32  Aligned_cols=82  Identities=11%  Similarity=0.034  Sum_probs=68.9

Q ss_pred             CCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcC-CCCccCCCCCCcHHHHHHhccCcccchhhH
Q psy8420          37 LNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCG-ADVNAKDYQGNTPLHIIATYERAISDFQTL  115 (199)
Q Consensus        37 g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~g-a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~  115 (199)
                      +.++|.+|.+|.|+++.|+..               +..+.+.+|+.+| +.|...|.++.+++.+|-..|..       
T Consensus         2 e~~in~rD~fgWTalmcaa~e---------------g~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~-------   59 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAME---------------GSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQ-------   59 (223)
T ss_pred             CCCccchhhhcchHHHHHhhh---------------cchhHHHHHhccCcccccccccccchHHHHHHhcChH-------
Confidence            468999999999999999999               9999999999999 89999999999999999999999       


Q ss_pred             HHHHHHHHHcCCCCCCCC--CCCCCccc
Q psy8420         116 HTIILDLTENGAHMDTVN--NKGLTPIQ  141 (199)
Q Consensus       116 ~~~~~~Ll~~ga~~~~~~--~~g~tpl~  141 (199)
                       .++..|.+.-.+-+..+  ..+.++..
T Consensus        60 -~fvh~lfe~~~ets~p~nss~~e~lfy   86 (223)
T KOG2384|consen   60 -AFVHSLFENDRETSHPMNSSRDEALFY   86 (223)
T ss_pred             -HHHHHHHHHhccCCCcccCCCCCccch
Confidence             99999988744333322  24444444

>KOG0506|consensus

Probab=98.13  E-value=3.7e-06  Score=69.33  Aligned_cols=86  Identities=19%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             CCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc
Q psy8420          46 QNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN  125 (199)
Q Consensus        46 ~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~  125 (199)
                      .+..++++|+..               |....++.+.-.|.+++.+|++.+|+||.|+..|+.        +++++|++.
T Consensus       505 ~~~i~~~~aa~~---------------GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v--------~v~kfl~~~  561 (622)
T KOG0506|consen  505 DTVINVMYAAKN---------------GDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHV--------EVVKFLLNA  561 (622)
T ss_pred             cchhhhhhhhhc---------------CCHHHHHHHHHhcccccccccccchhheeecccCce--------eHHHHHHHH
Confidence            344556666666               999999999999999999999999999999999999        999999975


Q ss_pred             -CCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420         126 -GAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus       126 -ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                       +.+++.+|+.|+|||+-    ...+.+..|-+.
T Consensus       562 ~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  562 CKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             HcCCCChhhccCCCcchHhHhcCcHHHHHHHHHH
Confidence             89999999999999976    445555444443

>KOG0522|consensus

Probab=98.12  E-value=4.8e-06  Score=69.52  Aligned_cols=74  Identities=22%  Similarity=0.355  Sum_probs=61.6

Q ss_pred             CcHHHHHH-H-HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccch
Q psy8420          73 PCAATTKL-L-IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTG  146 (199)
Q Consensus        73 ~~~~~~~~-L-l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~  146 (199)
                      ...+-... + .+.+..++..|..|+||||.|+..|+.        ..++.|+..||++..+|++|++|||-    +...
T Consensus        31 ~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~--------~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   31 TDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHV--------EAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             cchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCH--------HHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            55554443 2 334678999999999999999999999        99999999999999999999999997    5666


Q ss_pred             HHHHHHhh
Q psy8420         147 VADLILRT  154 (199)
Q Consensus       147 ~~~~ll~~  154 (199)
                      ++..++++
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            77777766

>KOG0511|consensus

Probab=97.90  E-value=4.9e-05  Score=61.33  Aligned_cols=71  Identities=21%  Similarity=0.180  Sum_probs=62.8

Q ss_pred             hHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420          49 SLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH  128 (199)
Q Consensus        49 t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~  128 (199)
                      .-|..||..               |..+.+++|++.|.+||..|++..+||.+|+..|+.        .++++|++.||-
T Consensus        38 ~elceacR~---------------GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe--------~vvklLLenGAi   94 (516)
T KOG0511|consen   38 GELCEACRA---------------GDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHE--------DVVKLLLENGAI   94 (516)
T ss_pred             HHHHHHhhc---------------ccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcH--------HHHHHHHHcCCc
Confidence            346677777               999999999999999999999999999999999999        999999999997


Q ss_pred             CCCCCCCCCCcccc
Q psy8420         129 MDTVNNKGLTPIQA  142 (199)
Q Consensus       129 ~~~~~~~g~tpl~~  142 (199)
                      ...-..+|..++.-
T Consensus        95 C~rdtf~G~RC~Yg  108 (516)
T KOG0511|consen   95 CSRDTFDGDRCHYG  108 (516)
T ss_pred             ccccccCcchhhhh
Confidence            76666678777654

>KOG0520|consensus

Probab=97.82  E-value=2.5e-05  Score=69.92  Aligned_cols=106  Identities=26%  Similarity=0.262  Sum_probs=79.7

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      -|.|.+|+++..+.         ...++.+++- |-.....|..|...+|.++..                +.+..-+++
T Consensus       573 r~~lllhL~a~~ly---------awLie~~~e~~~~~~~eld~d~qgV~hfca~l----------------g~ewA~ll~  627 (975)
T KOG0520|consen  573 RDMLLLHLLAELLY---------AWLIEKVIEWAGSGDLELDRDGQGVIHFCAAL----------------GYEWAFLPI  627 (975)
T ss_pred             cchHHHHHHHHHhH---------HHHHHHHhcccccCchhhcccCCChhhHhhhc----------------CCceeEEEE
Confidence            36788999999998         7788888874 655556677777788885555                334443333


Q ss_pred             -hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCC------CCCCCCcccc
Q psy8420          83 -RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV------NNKGLTPIQA  142 (199)
Q Consensus        83 -~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~------~~~g~tpl~~  142 (199)
                       -.|..++.+|..|+||||+|+..|+.        .++..|.+.|++....      ...|.|+-.+
T Consensus       628 ~~~~~ai~i~D~~G~tpL~wAa~~G~e--------~l~a~l~~lga~~~~~tdps~~~p~g~ta~~l  686 (975)
T KOG0520|consen  628 SADGVAIDIRDRNGWTPLHWAAFRGRE--------KLVASLIELGADPGAVTDPSPETPGGKTAADL  686 (975)
T ss_pred             eecccccccccCCCCcccchHhhcCHH--------HHHHHHHHhccccccccCCCCCCCCCCchhhh
Confidence             46888999999999999999999999        9999999887765433      3356666666

>KOG2505|consensus

Probab=97.60  E-value=0.00018  Score=59.98  Aligned_cols=72  Identities=22%  Similarity=0.242  Sum_probs=58.2

Q ss_pred             CcHHHHHHHHhcCCCCccC------CCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-ccc
Q psy8420          73 PCAATTKLLIRCGADVNAK------DYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-TTT  145 (199)
Q Consensus        73 ~~~~~~~~Ll~~ga~v~~~------d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-~~~  145 (199)
                      .-...+++|.+.+++.|..      +..-.|+||+|+.++..        +++.+||+.|+|+...|..|.||+++ .++
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~--------k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGAR--------KCVKYFLEEGCDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchH--------HHHHHHHHhcCCchhcccCCCCcccccccH
Confidence            3467888888888776543      44567999999999999        99999999999999999999999999 445


Q ss_pred             hHHHHHH
Q psy8420         146 GVADLIL  152 (199)
Q Consensus       146 ~~~~~ll  152 (199)
                      ++-..++
T Consensus       474 dVk~~F~  480 (591)
T KOG2505|consen  474 DVKSIFI  480 (591)
T ss_pred             HHHHHHH
Confidence            5544444

>KOG2384|consensus

Probab=97.48  E-value=0.00034  Score=51.51  Aligned_cols=68  Identities=10%  Similarity=-0.054  Sum_probs=59.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcC-CCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSL-NKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g-~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|||+|+-|+..|.         -+.+.+|+.+| +.+..+|..+.+.+.+|-..               |+.+++..
T Consensus         9 D~fgWTalmcaa~eg~---------~eavsyllgrg~a~vgv~d~ssldaaqlaek~---------------g~~~fvh~   64 (223)
T KOG2384|consen    9 DAFGWTALMCAAMEGS---------NEAVSYLLGRGVAFVGVTDESSLDAAQLAEKG---------------GAQAFVHS   64 (223)
T ss_pred             hhhcchHHHHHhhhcc---------hhHHHHHhccCcccccccccccchHHHHHHhc---------------ChHHHHHH
Confidence            6789999999999999         89999999999 89999999999999999999               89999999


Q ss_pred             HHhcCCCCccCCC
Q psy8420          81 LIRCGADVNAKDY   93 (199)
Q Consensus        81 Ll~~ga~v~~~d~   93 (199)
                      |.+.-.+-...+.
T Consensus        65 lfe~~~ets~p~n   77 (223)
T KOG2384|consen   65 LFENDRETSHPMN   77 (223)
T ss_pred             HHHHhccCCCccc
Confidence            8887555444443

>KOG3609|consensus

Probab=96.73  E-value=0.0047  Score=54.82  Aligned_cols=110  Identities=14%  Similarity=0.054  Sum_probs=81.9

Q ss_pred             HHHHHHHHhhccccCChhHHHHHHHHHHcC----CCcccccCCCchHHHHHHhcCC-CC----Cccc------ccccccC
Q psy8420           8 SLYLLVILTKVIKNISEEEEYRIYKLVFSL----NKLSVASRQNQSLLHLCVNYET-PV----DTFH------TNDVCKF   72 (199)
Q Consensus         8 ~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g----~~i~~~~~~g~t~L~~a~~~~~-~~----~~~~------l~~~~~~   72 (199)
                      -...||..|.         ...|+..++..    .++|..|.-|+++|+.|..+++ ++    .+++      +-.|...
T Consensus        28 ~fL~a~E~gd---------~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~   98 (822)
T KOG3609|consen   28 GFLLAHENGD---------VPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAV   98 (822)
T ss_pred             HHHHHHHcCC---------hHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHH
Confidence            3457888888         78888887742    5688999999999999999988 44    2332      2235666


Q ss_pred             CcHHHHHHHHhcCCCC----------ccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCC
Q psy8420          73 PCAATTKLLIRCGADV----------NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN  134 (199)
Q Consensus        73 ~~~~~~~~Ll~~ga~v----------~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~  134 (199)
                      +..+.++.++.+-...          ...-..+-||+..|+..++.        +|++.|+.+|+.+.....
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nny--------Eil~~Ll~kg~~i~~PH~  162 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNF--------EILQCLLTRGHCIPIPHD  162 (822)
T ss_pred             HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcch--------HHHHHHHHcCCCCCCCcc
Confidence            7888888888763222          11223567999999999999        999999999998866544

>smart00248 ANK ankyrin repeats

Probab=96.72  E-value=0.0022  Score=31.08  Aligned_cols=29  Identities=14%  Similarity=-0.115  Sum_probs=25.7

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcc
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLS   41 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~   41 (199)
                      +|.||+|+++..+.         .++++.++..|.+++
T Consensus         1 ~~~~~l~~~~~~~~---------~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGN---------LEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCC---------HHHHHHHHHcCCCCC
Confidence            47899999999999         999999999987664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.52  E-value=0.0056  Score=29.52  Aligned_cols=29  Identities=31%  Similarity=0.568  Sum_probs=25.7

Q ss_pred             CCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCC
Q psy8420          94 QGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMD  130 (199)
Q Consensus        94 ~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~  130 (199)
                      .|.||+|+++..+..        ++++.|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~--------~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNL--------EVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCH--------HHHHHHHHcCCCCC
Confidence            368999999999999        99999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609|consensus

Probab=96.47  E-value=0.0083  Score=53.34  Aligned_cols=83  Identities=10%  Similarity=0.047  Sum_probs=62.0

Q ss_pred             CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCC----------CC
Q psy8420          62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM----------DT  131 (199)
Q Consensus        62 ~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~----------~~  131 (199)
                      |...++.|....+.++.++|++++..+       .-+|-+|...+..        ++++.++.+....          ..
T Consensus        62 Gr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v--------~~VE~ll~~~~~~~~~~~~~d~~~~  126 (822)
T KOG3609|consen   62 GRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSV--------PLVELLLVHFVDAPYLERSGDANSP  126 (822)
T ss_pred             hhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHH--------HHHHHHHhcccccchhccccccCcc
Confidence            778888888889999999999887655       3378888888888        8899988763322          12


Q ss_pred             CCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420         132 VNNKGLTPIQA----TTTGVADLILRTLTKIN  159 (199)
Q Consensus       132 ~~~~g~tpl~~----~~~~~~~~ll~~~~~~~  159 (199)
                      .=..+-||+.+    .+-++++.|++.+...+
T Consensus       127 ~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  127 HFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             cCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            22467888877    66789999999865543

>KOG2505|consensus

Probab=96.45  E-value=0.0048  Score=51.77  Aligned_cols=62  Identities=23%  Similarity=0.229  Sum_probs=52.0

Q ss_pred             HHHHHHHHHcCCCcccc------cCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHH
Q psy8420          27 EYRIYKLVFSLNKLSVA------SRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLH  100 (199)
Q Consensus        27 ~~~~~~ll~~g~~i~~~------~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~  100 (199)
                      ...++.|.+++.+.|..      ++.-.|+||+|+..               +..+++.+||+.|+|+..+|..|.||..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~q---------------g~~k~v~~~Leeg~Dp~~kd~~Grtpy~  468 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQ---------------GARKCVKYFLEEGCDPSTKDGAGRTPYS  468 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhc---------------chHHHHHHHHHhcCCchhcccCCCCccc
Confidence            35577788888777643      44567899999999               9999999999999999999999999998


Q ss_pred             HHH
Q psy8420         101 IIA  103 (199)
Q Consensus       101 ~a~  103 (199)
                      ++.
T Consensus       469 ls~  471 (591)
T KOG2505|consen  469 LSA  471 (591)
T ss_pred             ccc
Confidence            865

>KOG0520|consensus

Probab=96.04  E-value=0.0058  Score=55.36  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=69.5

Q ss_pred             CcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhc-CCCCccCCCCCCcHHHHHHhccCcccchhhHHH
Q psy8420          39 KLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRC-GADVNAKDYQGNTPLHIIATYERAISDFQTLHT  117 (199)
Q Consensus        39 ~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~-ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~  117 (199)
                      .+......|++.+|++...               +....++.+++. |......|..|.-.+|.++..+ .        +
T Consensus       566 ~~~~~~~r~~lllhL~a~~---------------lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg-~--------e  621 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAEL---------------LYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALG-Y--------E  621 (975)
T ss_pred             ccccCCCcchHHHHHHHHH---------------hHHHHHHHHhcccccCchhhcccCCChhhHhhhcC-C--------c
Confidence            3444566889999999988               899999999986 7777777888888888855544 3        4


Q ss_pred             HHHHHH-HcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420         118 IILDLT-ENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus       118 ~~~~Ll-~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                      ..-+|. -.|..++.+|..|+||||+    +...++..|.+.++.
T Consensus       622 wA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~  666 (975)
T KOG0520|consen  622 WAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGAD  666 (975)
T ss_pred             eeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccc
Confidence            444444 4588999999999999999    344455556655443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.40  E-value=0.69  Score=35.49  Aligned_cols=49  Identities=29%  Similarity=0.323  Sum_probs=41.8

Q ss_pred             CcHHHHHHHHhcC-CCCccC---CCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCC
Q psy8420          73 PCAATTKLLIRCG-ADVNAK---DYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM  129 (199)
Q Consensus        73 ~~~~~~~~Ll~~g-a~v~~~---d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~  129 (199)
                      ....++++++.+| ++||.+   .++|.|-|--|...++.        +++..|+++||-.
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~--------emi~~Llk~GA~~  280 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNS--------EMIAFLLKYGAIS  280 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcH--------HHHHHHHHcCccc
Confidence            4677899999998 567764   46899999999999999        9999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.34  E-value=1.1  Score=34.42  Aligned_cols=47  Identities=11%  Similarity=0.131  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHcC-CCcccc---cCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCC
Q psy8420          26 EEYRIYKLVFSL-NKLSVA---SRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGAD   87 (199)
Q Consensus        26 ~~~~~~~ll~~g-~~i~~~---~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~   87 (199)
                      +..+++.++.+| +++|.+   -..|.|.|--|+.+               +..+++.+|+++||-
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky---------------~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKY---------------KNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhc---------------CcHHHHHHHHHcCcc
Confidence            367788888887 777754   34788999999988               999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-04

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           ++L+  GADVNA D +GNTPLH+ A Y+           I+  L ++GA ++  +N G T
Sbjct: 31  RILMANGADVNANDRKGNTPLHLAADYDHL--------EIVEVLLKHGADVNAHDNDGST 82
Query: 139 PIQ 141
           P+ 
Sbjct: 83  PLH 85

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           ++L+  GADVNA+D  G TPLH+ A        F     I+  L +NGA ++ V++ G+T
Sbjct: 31  RILMANGADVNAEDASGWTPLHLAA--------FNGHLEIVEVLLKNGADVNAVDHAGMT 82
Query: 139 PIQ 141
           P++
Sbjct: 83  PLR 85

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           KLL+  GADVNAKD  G TPLH+ A           L  + L L E GA ++  +  G T
Sbjct: 19  KLLLEAGADVNAKDKNGRTPLHLAARN-------GHLEVVKL-LLEAGADVNAKDKNGRT 70
Query: 139 PIQ-ATTTG---VADLILRTLTKINLK 161
           P+  A   G   V  L+L     +N K
Sbjct: 71  PLHLAARNGHLEVVKLLLEAGADVNAK 97

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
           ++L   GADVNA DY G+TPLH+ A            H  I++ L +NGA ++   N G 
Sbjct: 31  RILTANGADVNANDYWGHTPLHLAAMLG---------HLEIVEVLLKNGADVNATGNTGR 81
Query: 138 TPIQ 141
           TP+ 
Sbjct: 82  TPLH 85

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           KLLI  GADVNAKD  G TPLH  A         +    I+  L   GA ++  ++ G T
Sbjct: 54  KLLISKGADVNAKDSDGRTPLHYAAK--------EGHKEIVKLLISKGADVNAKDSDGRT 105
Query: 139 PIQ-ATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDL 183
           P+  A   G  +++         K L +K    N     G  P DL
Sbjct: 106 PLHYAAKEGHKEIV---------KLLISKGADVNTSDSDGRTPLDL 142

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
           ++L++ GADVNA D  G+TPLH+ A Y          H  I++ L +NGA ++  +  G 
Sbjct: 64  EVLLKHGADVNAADKMGDTPLHLAALYG---------HLEIVEVLLKNGADVNATDTYGF 114
Query: 138 TPIQ 141
           TP+ 
Sbjct: 115 TPLH 118

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 26/113 (23%)
Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
           ++L+  GADVNA D+ G+TPLH+ A         +T H  I++ L + GA ++  +N G 
Sbjct: 31  RILMANGADVNATDWLGHTPLHLAA---------KTGHLEIVEVLLKYGADVNAWDNYGA 81
Query: 138 TPIQ-ATTTG---VADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESF 186
           TP+  A   G   + +++L+    +N K             Y+G  P  L ++
Sbjct: 82  TPLHLAADNGHLEIVEVLLKHGADVNAK------------DYEGFTPLHLAAY 122

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           KLL+  GADVNAKD  G TPLH+ A           L  + L L E GA ++  +  G T
Sbjct: 19  KLLLEAGADVNAKDKNGRTPLHLAARN-------GHLEVVKL-LLEAGADVNAKDKNGRT 70
Query: 139 PIQ 141
           P+ 
Sbjct: 71  PLH 73

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 69  VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGA 127
              F      ++L++ GADVNAKD  G TPLH+ A         +  H  I++ L +NGA
Sbjct: 54  AAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAA---------RRGHLEIVEVLLKNGA 104
Query: 128 HMDTVNNKGLTPIQ-ATTTG---VADLILRTLTKIN 159
            ++  ++ G TP+  A   G   + +++L+    +N
Sbjct: 105 DVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           ++L+  GAD NA D+ G TPLH+ A    A+   + +  ++     NGA ++ V+  G T
Sbjct: 19  RILMANGADANAYDHYGRTPLHMAA----AVGHLEIVEVLL----RNGADVNAVDTNGTT 70
Query: 139 PIQ-ATTTG---VADLILRTLTKINLK 161
           P+  A + G   + +++L+    +N K
Sbjct: 71  PLHLAASLGHLEIVEVLLKYGADVNAK 97

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 72  FPCAAT----TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA 127
           + C+A      + L++ G  VN KD  G +PLHI A+  R          I+  L   GA
Sbjct: 46  WACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR--------DEIVKALLVKGA 97
Query: 128 HMDTVNNKGLTPIQ 141
           H++ VN  G TP+ 
Sbjct: 98  HVNAVNQNGCTPLH 111

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 20/107 (18%)
Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
           KLLI  GADVNAKD  G TPLH  A         +  H  ++  L   GA ++  ++ G 
Sbjct: 54  KLLISKGADVNAKDSDGRTPLHHAA---------ENGHKEVVKLLISKGADVNAKDSDGR 104
Query: 138 TPI-QATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDL 183
           TP+  A   G  +++         K L +K    N     G  P DL
Sbjct: 105 TPLHHAAENGHKEVV---------KLLISKGADVNTSDSDGRTPLDL 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-09
2etb_A	256	Transient receptor potential cation channel subfam	4e-10
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-04
2pnn_A	273	Transient receptor potential cation channel subfa	1e-08
2pnn_A	273	Transient receptor potential cation channel subfa	9e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-04
2rfa_A	232	Transient receptor potential cation channel subfa	2e-07
2rfa_A	232	Transient receptor potential cation channel subfa	1e-05
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 75  AATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN 134
               K+ +  GAD+ A        +     +   + + + +    L  +++G  +   + 
Sbjct: 94  TELCKIFLEKGADITALYKPYKIVVF-KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK 152

Query: 135 KGLTPIQ-ATTTG---VADLILRTLTKINLK 161
            GLT ++            ++   + K NLK
Sbjct: 153 WGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 76  ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             +  LI  GAD+ ++  +G T    +        D      +     E GA +  +   
Sbjct: 56  KISMFLINKGADIKSRTKEGTTLFFPLFQGGGN--DITGTTELCKIFLEKGADITALYKP 113

Query: 136 GLTP 139
               
Sbjct: 114 YKIV 117

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 11/74 (14%)

Query: 77  TTKLLIRCG---ADVNAKDYQGNTPLHIIATYERAISDFQTLHT--------IILDLTEN 125
               L+      A + A D  GNT LH +        +   L          +   L   
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210

Query: 126 GAHMDTVNNKGLTP 139
               +  N++GLTP
Sbjct: 211 VQLEEISNHQGLTP 224

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 19/92 (20%)

Query: 51  LHLCVNYETPVDTFHTNDVCKFPCAA------TTKLLIRCGADVNAKDYQGNTPLHIIAT 104
           LH  V         ++ +                  L          ++QG TPL + A 
Sbjct: 176 LHALVMIAD-----NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230

Query: 105 YERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +          I   + +        ++  
Sbjct: 231 EGKI--------EIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 18/76 (23%)

Query: 77  TTKLLIRCGADVNAKD-------------YQGNTPLHIIATYERAISDFQTLHTIILDLT 123
             KLL+  GADV+ +              Y G  PL  +A   +       L    L+  
Sbjct: 105 CVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS-LAACTKQWDVVTYL----LENP 159

Query: 124 ENGAHMDTVNNKGLTP 139
              A ++  ++ G T 
Sbjct: 160 HQPASLEATDSLGNTV 175

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             KLLI+   DVN KDY G TPLH  A + +            + L EN   M+ VN  G
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGK-------EEACRI-LVENLCDMEAVNKVG 265

Query: 137 LTPIQATTTGVADLILRTLTKINLK 161
            T        +   +     K NL 
Sbjct: 266 QTAFDVADEDILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             K L+  GA++N  D +G  PLH  A+          L      L   GAH+  VN++G
Sbjct: 88  MVKFLVENGANINQPDNEGWIPLHAAASCGY-------LDIAEY-LISQGAHVGAVNSEG 139

Query: 137 LTP 139
            TP
Sbjct: 140 DTP 142

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 10/67 (14%)

Query: 74  CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTV 132
                + L     +       G T LH+ A            +T +L  L +    ++  
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKG---------YTEVLKLLIQARYDVNIK 228

Query: 133 NNKGLTP 139
           +  G TP
Sbjct: 229 DYDGWTP 235

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             + LI  GA V A + +G+TPL  IA  E           +  ++   G  ++    + 
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLD-IAEEE------AMEELLQNEVNRQGVDIEAARKEE 173

Query: 137 LTP 139
              
Sbjct: 174 ERI 176

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
               L+  GAD+N  +  G T LH     +        +  +   L ENGA+++  +N+G
Sbjct: 55  EVLRLLERGADINYANVDGLTALHQACIDDN-------VDMVKF-LVENGANINQPDNEG 106

Query: 137 LTP 139
             P
Sbjct: 107 WIP 109

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.8 bits (128), Expect = 4e-09
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 74  CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN 133
                + L++  AD+NA +  GN PLH    + +          +  DL  NGA +   N
Sbjct: 84  HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ--------DQVAEDLVANGALVSICN 135

Query: 134 NKGLTP 139
             G  P
Sbjct: 136 KYGEMP 141

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++LI  GA +N  +   +TPLH+ A++            I+  L +  A ++ VN  G
Sbjct: 54  VVEMLIMRGARINVMNRGDDTPLHLAASHGH--------RDIVQKLLQYKADINAVNEHG 105

Query: 137 LTP 139
             P
Sbjct: 106 NVP 108

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 43.6 bits (104), Expect = 7e-06
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 8/59 (13%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             + L+  GA V+  +  G  P+       R          +     + G +++ +  K
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKAPLRE--------LLRERAEKMGQNLNRIPYK 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGA-DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             +L +     D+N  D  G +PLH      R          + + L   GA ++ +N  
Sbjct: 20  AVRLWLDNTENDLNQGDDHGFSPLHWACREGR-------SAVVEM-LIMRGARINVMNRG 71

Query: 136 GLTP 139
             TP
Sbjct: 72  DDTP 75

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 51.2 bits (124), Expect = 5e-09
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
             + L+  GAD+NA D    TPL   A YE         H   +  L   GA        
Sbjct: 55  ILEFLLLKGADINAPDKHHITPLL-SAVYEG--------HVSCVKLLLSKGADKTVKGPD 105

Query: 136 GLTP-IQATTTGVADLI 151
           GLT         +  L+
Sbjct: 106 GLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.6 bits (112), Expect = 2e-07
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNKGL 137
           K  +  G DVN     G  PLH  A               I+  L   GA ++  +   +
Sbjct: 24  KDYVAKGEDVNRTLEGGRKPLHYAADCG---------QLEILEFLLLKGADINAPDKHHI 74

Query: 138 TP 139
           TP
Sbjct: 75  TP 76

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 51.3 bits (124), Expect = 6e-09
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +LL++  A VN   YQ ++PLH  A              I+  L   GA  + VN  G
Sbjct: 58  VVELLLQHKALVNTTGYQNDSPLHDAAKNGH--------VDIVKLLLSYGASRNAVNIFG 109

Query: 137 LTP 139
           L P
Sbjct: 110 LRP 112

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 48.2 bits (116), Expect = 9e-08
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
           + + L++ G+D N KD+ G TPLH    +          H  ++  L ++ A ++T   +
Sbjct: 25  SVEYLLQNGSDPNVKDHAGWTPLHEACNHG---------HLKVVELLLQHKALVNTTGYQ 75

Query: 136 GLTP 139
             +P
Sbjct: 76  NDSP 79

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
             KLL+  GA  NA +  G  P+      
Sbjct: 91  IVKLLLSYGASRNAVNIFGLRPVDYTDDE 119

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 79  KLLIRCG---ADVNAKDYQGNTPLHI--------IATYERAISDFQTLHTIILDLTENGA 127
           K L++     AD++A+D  GNT LH         +   +   S +  +  +   L     
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224

Query: 128 HMDTVNNKGLTP 139
             +  N KGLTP
Sbjct: 225 LEEITNRKGLTP 236

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 27/82 (32%)

Query: 76  ATTKLLIRCGADVNAKD--------------YQGNTPLHIIATYERAISDFQTLHT-IIL 120
               LL+  GADV A                Y G  PL + A          T    I+ 
Sbjct: 115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA---------CTNQLAIVK 165

Query: 121 DLTENG---AHMDTVNNKGLTP 139
            L +N    A +   ++ G T 
Sbjct: 166 FLLQNSWQPADISARDSVGNTV 187

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.1 bits (126), Expect = 2e-08
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++L + GA +NA D  G T LH  A                  L   G+    ++ +G
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGH--------LQTCRLLLSYGSDPSIISLQG 313

Query: 137 LTPIQATTTGVADLIL 152
            T  Q     V  ++ 
Sbjct: 314 FTAAQMGNEAVQQILS 329

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 50.2 bits (121), Expect = 8e-08
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +LL+R GA+VN K+    TPLH+ A            + ++  L ++GA M+ +++ G
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAH--------NDVMEVLHKHGAKMNALDSLG 280

Query: 137 LTP 139
            T 
Sbjct: 281 QTA 283

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.6 bits (117), Expect = 3e-07
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
            T+LL++ GA VNA D    TPLH  A+  R          +   L  +GA    VN  G
Sbjct: 106 VTELLLKHGACVNAMDLWQFTPLHEAASKNR--------VEVCSLLLSHGADPTLVNCHG 157

Query: 137 LTPI 140
            + +
Sbjct: 158 KSAV 161

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
              LL     + +A D + +TPLH+ A Y R          I+  L ++GA +   +  G
Sbjct: 40  LMALLTPLNVNCHASDGRKSTPLHLAAGYNR--------VRIVQLLLQHGADVHAKDKGG 91

Query: 137 LTP 139
           L P
Sbjct: 92  LVP 94

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 7e-07
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
             +LL++ GADV+AKD  G  PLH   +Y          H  + + L ++GA ++ ++  
Sbjct: 73  IVQLLLQHGADVHAKDKGGLVPLHNACSYG---------HYEVTELLLKHGACVNAMDLW 123

Query: 136 GLTP 139
             TP
Sbjct: 124 QFTP 127

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.8 bits (107), Expect = 6e-06
 Identities = 10/76 (13%), Positives = 16/76 (21%), Gaps = 13/76 (17%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERA------ISDFQTLH-------TIILDLT 123
              LL+  GAD    +  G + + +  T E              L          +    
Sbjct: 139 VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198

Query: 124 ENGAHMDTVNNKGLTP 139
                         T 
Sbjct: 199 ALEIINFKQPQSHETA 214

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 9/63 (14%), Positives = 14/63 (22%), Gaps = 7/63 (11%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
           +   L    A            L   A              + L LT    +    + + 
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARS------GNEEKLMAL-LTPLNVNCHASDGRK 58

Query: 137 LTP 139
            TP
Sbjct: 59  STP 61

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 5/62 (8%)

Query: 78  TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL 137
            K  +        +     T LH         S       +   L   GA+++  N   +
Sbjct: 194 VKKTLALEIINFKQPQSHETALHCA-----VASLHPKRKQVAELLLRKGANVNEKNKDFM 248

Query: 138 TP 139
           TP
Sbjct: 249 TP 250

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++L++ GADVNAKD    T LH    +            + L L + GA + T +   
Sbjct: 82  IVEVLLKHGADVNAKDMLKMTALHWATEHNH-------QEVVEL-LIKYGADVHTQSKFC 133

Query: 137 LTP 139
            T 
Sbjct: 134 KTA 136

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
           TT++L+R G   +A+     TPLH+ A+             I+  L ++GA ++  +   
Sbjct: 49  TTEVLLRAGVSRDARTKVDRTPLHMAASEGH--------ANIVEVLLKHGADVNAKDMLK 100

Query: 137 LTP 139
           +T 
Sbjct: 101 MTA 103

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
             +LLI+ GADV+ +     T   I    
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDN 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.1 bits (95), Expect = 8e-05
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++L+  GA     D+ G +PLH+ A Y           T  + L   G   D      
Sbjct: 17  EVRILMANGAPFT-TDWLGTSPLHLAAQYGH-------FSTTEV-LLRAGVSRDARTKVD 67

Query: 137 LTP 139
            TP
Sbjct: 68  RTP 70

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.1 bits (121), Expect = 3e-08
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +LL++ GA VN  D    TPLH  A   +            L L ++GA     N  G
Sbjct: 90  VAELLVKHGAVVNVADLWKFTPLHEAAAKGK-------YEICKL-LLQHGADPTKKNRDG 141

Query: 137 LTP 139
            TP
Sbjct: 142 NTP 144

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.0 bits (113), Expect = 4e-07
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             + L++ GADV+AKD  G  PLH   +Y              L L ++GA ++  +   
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYGH-------YEVAEL-LVKHGAVVNVADLWK 108

Query: 137 LTP 139
            TP
Sbjct: 109 FTP 111

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIA 103
             KLL++ GAD   K+  GNTPL ++ 
Sbjct: 123 ICKLLLQHGADPTKKNRDGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 9/64 (14%)

Query: 77  TTKLLI-RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
           T K L      +    + + +TPLH  A Y R       +  +   L ++GA +   +  
Sbjct: 23  TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-------VSVVEY-LLQHGADVHAKDKG 74

Query: 136 GLTP 139
           GL P
Sbjct: 75  GLVP 78

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 50.1 bits (121), Expect = 3e-08
 Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
             + L+  GAD+  +   G TP+ +              +  +   +  +   +   N  
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLAVALG---------YRKVQQVIENHILKLFQSNLV 167

Query: 136 GLTP 139
              P
Sbjct: 168 PADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.3 bits (119), Expect = 6e-08
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
              LL+    D+N  D+ G TPL   A            H   +  L   GA + T  + 
Sbjct: 84  IVGLLLERDVDINIYDWNGGTPLL-YAVRGN--------HVKCVEALLARGADLTTEADS 134

Query: 136 GLTP 139
           G TP
Sbjct: 135 GYTP 138

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
           T + L+  GAD +    +  + L + +T           +T I+  L E    ++  +  
Sbjct: 51  TVRFLLEWGADPHILAKERESALSLASTGG---------YTDIVGLLLERDVDINIYDWN 101

Query: 136 GLTP 139
           G TP
Sbjct: 102 GGTP 105

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.6 bits (104), Expect = 7e-06
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 11/65 (16%)

Query: 77  TTKLLIRCGAD-VNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNN 134
             K  +R G + VN  D +G TPL   A+               +  L E GA    +  
Sbjct: 17  QLKEHLRKGDNLVNKPDERGFTPLI-WASAFG--------EIETVRFLLEWGADPHILAK 67

Query: 135 KGLTP 139
           +  + 
Sbjct: 68  ERESA 72

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +LL++ GAD  A+ Y G TPL                    L L  +GA         
Sbjct: 207 VLELLLKAGADPTARMYGGRTPLGSALLRPN-------PILARL-LRAHGAPEPEDGGDK 258

Query: 137 LTPIQ 141
           L+P  
Sbjct: 259 LSPCS 263

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             +LL   GAD+N  +   G TPLH+    +          +++  L + GA        
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA--------ASVLELLLKAGADPTARMYG 224

Query: 136 GLTP 139
           G TP
Sbjct: 225 GRTP 228

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 8/70 (11%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
           T + L   GA V   +  G+T LH+              HT    L +         +  
Sbjct: 60  TVEKLYAAGAGVLVAERGGHTALHLACRVRA--------HTCACVLLQPRPSHPRDASDT 111

Query: 137 LTPIQATTTG 146
                   T 
Sbjct: 112 YLTQSQDCTP 121

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 6/32 (18%), Positives = 8/32 (25%)

Query: 70  CKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
              P     +LL   GA          +P   
Sbjct: 233 LLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 11/66 (16%)

Query: 77  TTKLLIRCGAD---VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN 133
               L+   A    ++ ++  G T LH+ A             + +  L   GA +    
Sbjct: 24  FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE--------ASTVEKLYAAGAGVLVAE 75

Query: 134 NKGLTP 139
             G T 
Sbjct: 76  RGGHTA 81

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.9 bits (118), Expect = 3e-08
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             KLL+  GADVNA+   GNTP H+                + L L   GA ++  +   
Sbjct: 57  IVKLLLAKGADVNARSKDGNTPEHLAKKNGH-------HEIVKL-LDAKGADVNARSWGS 108

Query: 137 LTP 139
              
Sbjct: 109 SHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.2 bits (111), Expect = 3e-07
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             K L+  GADVNA+   GNTPLH+ A              I+  L   GA ++  +  G
Sbjct: 24  EVKKLLSKGADVNARSKDGNTPLHLAAKNGH--------AEIVKLLLAKGADVNARSKDG 75

Query: 137 LTP 139
            TP
Sbjct: 76  NTP 78

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLH 100
             KLL   GADVNA+ +  +   H
Sbjct: 90  IVKLLDAKGADVNARSWGSSHHHH 113

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.9 bits (123), Expect = 4e-08
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++L+    D++A +  G++PLHI A   R          ++L      + +   N +G
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENR-------YDCVVL-FLSRDSDVTLKNKEG 210

Query: 137 LTP 139
            TP
Sbjct: 211 ETP 213

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
              +L++ GA+++       TPL   A           L  +   L + GA +D  + +G
Sbjct: 26  ICHMLVQAGANIDTCSEDQRTPLMEAAENNH-------LEAVKY-LIKAGALVDPKDAEG 77

Query: 137 LTP 139
            T 
Sbjct: 78  STC 80

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             KLL+  G+D+N +D + N  LH  A           +    + L      +  VN  G
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGC-------VDIAEI-LLAAKCDLHAVNIHG 177

Query: 137 LTP 139
            +P
Sbjct: 178 DSP 180

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH-MDTVNNK 135
             K LI+ GA V+ KD +G+T LH+ A            + ++  L  NG   ++  ++ 
Sbjct: 59  AVKYLIKAGALVDPKDAEGSTCLHLAAKKGH--------YEVVQYLLSNGQMDVNCQDDG 110

Query: 136 GLTP 139
           G TP
Sbjct: 111 GWTP 114

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.6 bits (99), Expect = 4e-05
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
              L +   +DV  K+ +G TPL  
Sbjct: 192 CVVLFLSRDSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.2 bits (98), Expect = 7e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGA-DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             + L+  G  DVN +D  G TP+     Y+        +  + L L   G+ ++  +N+
Sbjct: 92  VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-------VDLVKL-LLSKGSDINIRDNE 143

Query: 136 GLTP 139
               
Sbjct: 144 ENIC 147

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             K+L++ GA   AKD    TPL   A   R       +  +    +++   +D  N +G
Sbjct: 155 MIKILVQLGASPTAKDKADETPLM-RAMEFRNREALDLM--MDTVPSKSSLRLDYANKQG 211

Query: 137 LTP 139
            + 
Sbjct: 212 NSH 214

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 6/63 (9%), Positives = 11/63 (17%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +LL     +V      G                      +        A + T +   
Sbjct: 305 VLQLLQEKLDEVVRSLNTGAGGAVKRKKKAA--------PAVKRMKLAPSAPVRTRSRSR 356

Query: 137 LTP 139
              
Sbjct: 357 ARS 359

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 13/68 (19%)

Query: 77  TTKLLIRC-----GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDT 131
              L++          ++  + QGN+ LH                 + +   E G  ++ 
Sbjct: 188 ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW--------EDVAMRFVEMGIDVNM 239

Query: 132 VNNKGLTP 139
            +N+   P
Sbjct: 240 EDNEHTVP 247

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
                +  G DVN +D +   PL++
Sbjct: 226 VAMRFVEMGIDVNMEDNEHTVPLYL 250

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
             + LI  G     ++  G T LH+
Sbjct: 35  EVRRLIETGVSPTIQNRFGCTALHL 59

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 6/55 (10%)

Query: 85  GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
               + K  +G T LH        +        +I  L + GA     +    TP
Sbjct: 128 EIGSHVKHCKGQTALHW------CVGLGPEYLEMIKILVQLGASPTAKDKADETP 176

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 8/61 (13%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
            +      +    D +    +H+ A   +           +  L E G      N  G T
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQ--------TDEVRRLIETGVSPTIQNRFGCT 55

Query: 139 P 139
            
Sbjct: 56  A 56

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.3 bits (124), Expect = 4e-08
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 10/66 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
             K L++  ADVNAK   G +PLH  A            HT I+  L +NGA  + V++ 
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQG---------HTDIVTLLLKNGASPNEVSSD 376

Query: 136 GLTPIQ 141
           G TP+ 
Sbjct: 377 GTTPLA 382

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 76  ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
               LL+   A+ N  +  G TPLH++A              +   L ++G  +D     
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGH--------VPVADVLIKHGVMVDATTRM 310

Query: 136 GLTP 139
           G TP
Sbjct: 311 GYTP 314

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
              +LI+ G  V+A    G TPLH+ + Y         +  +   L ++ A ++     G
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGN-------IKLVKF-LLQHQADVNAKTKLG 344

Query: 137 LTP 139
            +P
Sbjct: 345 YSP 347

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.2 bits (121), Expect = 8e-08
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             KLL+  G   ++  + G TPLHI A   +          +   L + G   +  + +G
Sbjct: 194 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ--------VEVARSLLQYGGSANAESVQG 245

Query: 137 LTP 139
           +TP
Sbjct: 246 VTP 248

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
             + L++ G   NA+  QG TPLH+ A            H  ++  L    A+ +  N  
Sbjct: 227 VARSLLQYGGSANAESVQGVTPLHLAAQEG---------HAEMVALLLSKQANGNLGNKS 277

Query: 136 GLTP 139
           GLTP
Sbjct: 278 GLTP 281

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 3e-07
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 74  CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTV 132
                K L++ GA  N  + +  TPLH +A            HT +   L +N A ++  
Sbjct: 26  HLPIVKNLLQRGASPNVSNVKVETPLH-MAARAG--------HTEVAKYLLQNKAKVNAK 76

Query: 133 NNKGLTP 139
                TP
Sbjct: 77  AKDDQTP 83

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 4e-07
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
           T   L+   A       +G TPLH+ A Y +       +    L L E  AH +     G
Sbjct: 128 TVLALLEKEASQACMTKKGFTPLHVAAKYGK-------VRVAEL-LLERDAHPNAAGKNG 179

Query: 137 LTP 139
           LTP
Sbjct: 180 LTP 182

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +LL+   A  NA    G TPLH+   +            I+  L   G    +    G
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNN--------LDIVKLLLPRGGSPHSPAWNG 212

Query: 137 LTP 139
            TP
Sbjct: 213 YTP 215

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 6e-07
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
              LL++ GA  N     G TPL  IA     IS    L  +     +  + +   +   
Sbjct: 359 IVTLLLKNGASPNEVSSDGTTPLA-IAKRLGYISVTDVLKVVT----DETSFVLVSDKHR 413

Query: 137 LTPIQA 142
           ++  + 
Sbjct: 414 MSFPET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             K L++  A VNAK     TPLH  A            + + L L EN A+ +     G
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCAARIGH-------TNMVKL-LLENNANPNLATTAG 113

Query: 137 LTP 139
            TP
Sbjct: 114 HTP 116

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             KLL+   A+ N     G+TPLHI A               +L L E  A    +  KG
Sbjct: 95  MVKLLLENNANPNLATTAGHTPLHIAAREGH--------VETVLALLEKEASQACMTKKG 146

Query: 137 LTP 139
            TP
Sbjct: 147 FTP 149

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 85  GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
           G         G TPLH +A++   +        I+ +L + GA  +  N K  TP
Sbjct: 4   GISGGGGGESGLTPLH-VASFMGHLP-------IVKNLLQRGASPNVSNVKVETP 50

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.5 bits (122), Expect = 5e-08
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +LL++ GA+VNA+ Y G++ LH  +           L  +   L  +GA     N   
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGL-------LPLVRT-LVRSGADSSLKNCHN 216

Query: 137 LTP 139
            TP
Sbjct: 217 DTP 219

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGADVNAKDYQ-GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
           T +LL+  GAD++A D + G +PL               L  + L L ++GA+++     
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNS-------LSMVQL-LLQHGANVNAQMYS 182

Query: 136 GLTP 139
           G + 
Sbjct: 183 GSSA 186

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 7e-06
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 12/67 (17%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM----DTV 132
             +LL+  GA   A D  G T  H+   +           T +  L ++ A      +  
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLACEHRS--------PTCLRALLDSAAPGTLDLEAR 112

Query: 133 NNKGLTP 139
           N  GLT 
Sbjct: 113 NYDGLTA 119

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
             + L+R GAD + K+   +TPL +
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 77  TTKLLI----RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
               L+    + G +++  +    TPLH+               +++  L   GA    +
Sbjct: 24  AVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL--------PSVVRLLVTAGASPMAL 75

Query: 133 NNKGLTP 139
           +  G T 
Sbjct: 76  DRHGQTA 82

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 88  VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
               D  G+TPLHI         +   +H ++    + G  +D  NN   TP
Sbjct: 2   ATRADEDGDTPLHIAVVQ----GNLPAVHRLVNLFQQGGRELDIYNNLRQTP 49

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.3 bits (119), Expect = 5e-08
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++L++ GADVNA D +G+TPLH+ A +         L  + + L +NGA ++  +  G
Sbjct: 95  IVEVLLKNGADVNANDMEGHTPLHLAAMFGH-------LEIVEV-LLKNGADVNAQDKFG 146

Query: 137 LTP 139
            T 
Sbjct: 147 KTA 149

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.7 bits (115), Expect = 2e-07
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++L+  GADVNA+D  G TPLH+ A           L  + + L +NGA ++ V++ G
Sbjct: 29  EVRILMANGADVNAEDASGWTPLHLAAFNGH-------LEIVEV-LLKNGADVNAVDHAG 80

Query: 137 LTP 139
           +TP
Sbjct: 81  MTP 83

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.6 bits (112), Expect = 5e-07
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++L++ GADVNA D+ G TPL + A +         L  + + L +NGA ++  + +G
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFGH-------LEIVEV-LLKNGADVNANDMEG 113

Query: 137 LTP 139
            TP
Sbjct: 114 HTP 116

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
             ++L++ GADVNA+D  G T   I
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDI 152

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 49.3 bits (119), Expect = 6e-08
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
             K+L+ CG DVN  D+ G TPL   A +          H   +  L E+GA      + 
Sbjct: 84  IVKMLLDCGVDVNEYDWNGGTPLL-YAVHGN--------HVKCVKMLLESGADPTIETDS 134

Query: 136 GLTP 139
           G   
Sbjct: 135 GYNS 138

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.9 bits (118), Expect = 8e-08
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
                I     +N  D +G TPL   A               +++ L +NGA    +   
Sbjct: 18  YLATRIEQENVINHTDEEGFTPLM-WAAAHG--------QIAVVEFLLQNGADPQLLGKG 68

Query: 136 GLTP 139
             + 
Sbjct: 69  RESA 72

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.8 bits (110), Expect = 1e-06
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 76  ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNN 134
           A  + L++ GAD         + L +  +           +T I+  L + G  ++  + 
Sbjct: 50  AVVEFLLQNGADPQLLGKGRESALSLACSKG---------YTDIVKMLLDCGVDVNEYDW 100

Query: 135 KGLTP 139
            G TP
Sbjct: 101 NGGTP 105

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.7 bits (115), Expect = 6e-08
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
             KLL+  GADVNAKD  G TPLH+ A            H  ++  L E GA ++  +  
Sbjct: 17  VVKLLLEAGADVNAKDKNGRTPLHLAARNG---------HLEVVKLLLEAGADVNAKDKN 67

Query: 136 GLTP 139
           G TP
Sbjct: 68  GRTP 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 43.5 bits (104), Expect = 2e-06
 Identities = 16/25 (64%), Positives = 18/25 (72%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
             KLL+  GADVNAKD  G TPLH+
Sbjct: 50  VVKLLLEAGADVNAKDKNGRTPLHL 74

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.7 bits (120), Expect = 8e-08
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
            T+LL+     VN  D Y  NT LH                T+I  L E GA++D  N K
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN--------TTVISLLLEAGANVDAQNIK 209

Query: 136 GLTP 139
           G + 
Sbjct: 210 GESA 213

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
               L++ GAD +  D +G + +H+ A +          HT I+  L   G  +D ++  
Sbjct: 91  MVVQLMKYGADPSLIDGEGCSCIHLAAQFG---------HTSIVAYLIAKGQDVDMMDQN 141

Query: 136 GLTP 139
           G+TP
Sbjct: 142 GMTP 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV-NNK 135
             + L+  G DV   D +  T LH  A   R       +  +       GA +D +  + 
Sbjct: 24  RCRELVEAGYDVRQPDKENVTLLHWAAINNR-------IDLVKY-YISKGAIVDQLGGDL 75

Query: 136 GLTP 139
             TP
Sbjct: 76  NSTP 79

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
              LL+  GA+V+A++ +G + L +
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 77  TTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             K  I  GA V+       +TPLH              L  ++  L + GA    ++ +
Sbjct: 57  LVKYYISKGAIVDQLGGDLNSTPLHWATRQGH-------LSMVVQ-LMKYGADPSLIDGE 108

Query: 136 GLTPI 140
           G + I
Sbjct: 109 GCSCI 113

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.1 bits (116), Expect = 8e-08
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 24/71 (33%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI--------IATYERAISDFQTLHTIILDLTENGAH 128
             KLL+  GADVNAKD  G TPLH+        +                   L E GA 
Sbjct: 17  VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL----------------LLEAGAD 60

Query: 129 MDTVNNKGLTP 139
           ++  +  G TP
Sbjct: 61  VNAKDKNGRTP 71

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.1 bits (116), Expect = 9e-08
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 24/71 (33%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI--------IATYERAISDFQTLHTIILDLTENGAH 128
             KLL+  GADVNAKD  G TPLH+        +                   L E GA 
Sbjct: 50  VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL----------------LLEAGAD 93

Query: 129 MDTVNNKGLTP 139
           ++  +  G TP
Sbjct: 94  VNAKDKNGRTP 104

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.1 bits (103), Expect = 5e-06
 Identities = 17/29 (58%), Positives = 19/29 (65%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
             KLL+  GADVNAKD  G TPLH+ A  
Sbjct: 83  VVKLLLEAGADVNAKDKNGRTPLHLAARN 111

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.2 bits (116), Expect = 9e-08
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++L++ GADVNA D  G TPLH+ A           L    + L ++GA ++  +  G
Sbjct: 62  IVEVLLKNGADVNAVDAIGFTPLHLAAFIGH-------LEIAEV-LLKHGADVNAQDKFG 113

Query: 137 LTP 139
            T 
Sbjct: 114 KTA 116

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.5 bits (109), Expect = 9e-07
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++L+  GADVNAKD  G TPL++   +            I+  L +NGA ++ V+  G
Sbjct: 29  EVRILMANGADVNAKDEYGLTPLYLATAHGH--------LEIVEVLLKNGADVNAVDAIG 80

Query: 137 LTP 139
            TP
Sbjct: 81  FTP 83

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.5 bits (104), Expect = 5e-06
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
             ++L++ GADVNA+D  G T   I
Sbjct: 95  IAEVLLKHGADVNAQDKFGKTAFDI 119

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.6 bits (117), Expect = 9e-08
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
           T K+L+  GADVN  D  G  P+H +A  E         HT ++      + +   + +G
Sbjct: 83  TLKVLVEHGADVNVPDGTGALPIH-LAVQEG--------HTAVVSFLAAESDLHRRDARG 133

Query: 137 LTP 139
           LTP
Sbjct: 134 LTP 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.0 bits (113), Expect = 3e-07
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +LL R     +A +  G T L  +  +            I L+L + GA  +  +  G
Sbjct: 18  VRRLLHRELVHPDALNRFGKTALQ-VMMFGS--------TAIALELLKQGASPNVQDTSG 68

Query: 137 LTP 139
            +P
Sbjct: 69  TSP 71

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
               L++ GA  N +D  G +P+H  A           L T+ + L E+GA ++  +  G
Sbjct: 50  IALELLKQGASPNVQDTSGTSPVHDAARTGF-------LDTLKV-LVEHGADVNVPDGTG 101

Query: 137 LTP 139
             P
Sbjct: 102 ALP 104

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.5 bits (91), Expect = 3e-04
 Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
               L    +D++ +D +G TPL +
Sbjct: 116 VVSFLAA-ESDLHRRDARGLTPLEL 139

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 12/89 (13%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             + L++ G  VN KD  G +PLHI A+             I+  L   GAH++ VN  G
Sbjct: 55  IVEFLLQLGVPVNDKDDAGWSPLHIAASAG--------XDEIVKALLVKGAHVNAVNQNG 106

Query: 137 LTPIQATTTG----VADLILRTLTKINLK 161
            TP+    +     +A ++L      + K
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAK 135

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             + ++   +     D    T LH   +             +   L + G  ++  ++ G
Sbjct: 22  LKERILADKSLATRTDQDSRTALHWACSAGH-------TEIVEF-LLQLGVPVNDKDDAG 73

Query: 137 LTP 139
            +P
Sbjct: 74  WSP 76

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 25/88 (28%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI-------IATY--------ERAISDFQT--LHT-- 117
           T + L+  GAD NA +  G  P+ +       +A            A     T  +H   
Sbjct: 27  TVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAA 86

Query: 118 ------IILDLTENGAHMDTVNNKGLTP 139
                  ++ L   GA +D  +  G  P
Sbjct: 87  REGFLDTLVVLHRAGARLDVCDAWGRLP 114

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
           T  +L R GA ++  D  G  P+ +
Sbjct: 93  TLVVLHRAGARLDVCDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.2 bits (103), Expect = 6e-06
 Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 10/59 (16%)

Query: 85  GADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNKGLTPIQA 142
              ++      +  L   A                +  L E GA  + +N  G  PIQ 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARG---------QVETVRQLLEAGADPNALNRFGRRPIQV 51

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             + LI   ADVNA D  G + LH  A                + L +NGA+ D  NN+ 
Sbjct: 139 MLEDLINSHADVNAVDDLGKSALHWAAAVNN--------VDAAVVLLKNGANKDMQNNRE 190

Query: 137 LTP 139
            TP
Sbjct: 191 ETP 193

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
              +L++ GA+ + ++ +  TPL + A             T  + L ++ A+ D  ++  
Sbjct: 172 AAVVLLKNGANKDMQNNREETPLFLAAREGS-------YETAKV-LLDHFANRDITDHMD 223

Query: 137 LTP 139
             P
Sbjct: 224 RLP 226

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.0 bits (105), Expect = 8e-06
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGA-DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             ++LIR  A D++A+ + G TPL + A              ++ DL  + A ++ V++ 
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAV--------EGMLEDLINSHADVNAVDDL 156

Query: 136 GLTP 139
           G + 
Sbjct: 157 GKSA 160

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
             K L+   AD N +D  G TPLH   + 
Sbjct: 72  AAKRLLEASADANIQDNMGRTPLHAAVSA 100

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
           T K+L+   A+ +  D+    P  I
Sbjct: 205 TAKVLLDHFANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 51  LHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADV-NAKDYQGNTPLHIIATYERAI 109
           L +       ++T +     +    A     I  GA + N  D  G T LH+ A Y R  
Sbjct: 14  LMIASCSGGGLETGN--SEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR-- 69

Query: 110 SDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
                       L E  A  +  +N G TP
Sbjct: 70  -----SDAAKR-LLEASADANIQDNMGRTP 93

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             + LI   ADVNA D  G + LH  A           +   ++ L +NGA+ D  NN+ 
Sbjct: 107 MLEDLINSHADVNAVDDLGKSALHWAAAVNN-------VDAAVV-LLKNGANKDMQNNRE 158

Query: 137 LTP 139
            TP
Sbjct: 159 ETP 161

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
              +L++ GA+ + ++ +  TPL + A             T  + L ++ A+ D  ++  
Sbjct: 140 AAVVLLKNGANKDMQNNREETPLFLAAREGS-------YETAKV-LLDHFANRDITDHMD 191

Query: 137 LTP 139
             P
Sbjct: 192 RLP 194

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 74  CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH-MDTV 132
            +   K L+   AD N +D  G TPLH   + +           +   L  N A  +D  
Sbjct: 37  RSDAAKRLLEASADANIQDNMGRTPLHAAVSADA--------QGVFQILIRNRATDLDAR 88

Query: 133 NNKGLTP 139
            + G TP
Sbjct: 89  MHDGTTP 95

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGA-DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             ++LIR  A D++A+ + G TPL + A              ++ DL  + A ++ V++ 
Sbjct: 73  VFQILIRNRATDLDARMHDGTTPLILAARLAV--------EGMLEDLINSHADVNAVDDL 124

Query: 136 GLTP 139
           G + 
Sbjct: 125 GKSA 128

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
           T K+L+   A+ +  D+    P  I
Sbjct: 173 TAKVLLDHFANRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 74  CAATTKLLIRCGADV-NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
             A     I  GA + N  D  G T LH+ A Y R              L E  A  +  
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSR-------SDAAKR-LLEASADANIQ 54

Query: 133 NNKGLTP 139
           +N G TP
Sbjct: 55  DNMGRTP 61

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA------HMD 130
             +LLI  GAD+ A+D  GNT LHI+          Q  + ++                 
Sbjct: 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLL----SYDGGDHLKSLEL 191

Query: 131 TVNNKGLTP 139
             NN+GLTP
Sbjct: 192 VPNNQGLTP 200

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 76  ATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
           A +KLL   G +V+ +   G T LHI A Y
Sbjct: 18  ALSKLLKFEGCEVHQRGAMGETALHIAALY 47

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 21/76 (27%)

Query: 77  TTKLLIRCGADVNAKD-------------YQGNTPLHIIATYERAISDFQTLHTIILDLT 123
             + L+  GA V+A+              Y G  PL   A              I+  L 
Sbjct: 90  LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS--------EEIVRLLI 141

Query: 124 ENGAHMDTVNNKGLTP 139
           E+GA +   ++ G T 
Sbjct: 142 EHGADIRAQDSLGNTV 157

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 77  TTKLLI-RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             K+L+   GADVNA D  G   L          SD   +  I   L ++GA ++    +
Sbjct: 163 VLKILLDEMGADVNACDNMGRNALIHALLS----SDDSDVEAITHLLLDHGADVNVRGER 218

Query: 136 GLTP-IQATTTG----VADLILRTLTKINLK 161
           G TP I A        V  L+ +   +IN  
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDT 249

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.9 bits (115), Expect = 4e-07
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 74  CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN 133
             A T LL+  GADVN +  +G TPL +    +        L  +   L +    ++  +
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKH-------LGLVQRLLEQEHIEINDTD 250

Query: 134 NKGLTP 139
           + G T 
Sbjct: 251 SDGKTA 256

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +LL+R GAD   +   G TP  + A           +  + L     GA ++  +  G
Sbjct: 54  IVELLLRHGADPVLRKKNGATPFLLAAIAGS-------VKLLKL-FLSKGADVNECDFYG 105

Query: 137 LTP 139
            T 
Sbjct: 106 FTA 108

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             KL +  GADVN  D+ G T     A Y +           +  L + GA+++      
Sbjct: 87  LLKLFLSKGADVNECDFYGFTAFMEAAVYGK--------VKALKFLYKRGANVNLRRKTK 138

Query: 137 LTPIQATTTG 146
               +    G
Sbjct: 139 EDQERLRKGG 148

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 80  LLIRCGADVNAKDYQGNTPLHI 101
           LL +   ++N  D  G T L +
Sbjct: 238 LLEQEHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             + L+  GA+VN ++   G TPLH      R          I+  L  +GA        
Sbjct: 20  LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR--------EDIVELLLRHGADPVLRKKN 71

Query: 136 GLTP 139
           G TP
Sbjct: 72  GATP 75

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 77  TTKLLIRCG---ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDT- 131
               L   G   AD+  +D +GNT LH +        +     T + D L    A +   
Sbjct: 155 IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD 214

Query: 132 ------VNNKGLTP 139
                 +NN GL+P
Sbjct: 215 TNLEALLNNDGLSP 228

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 38/131 (29%)

Query: 74  CAATTKLLIRCGADVNAKD--------------YQGNTPLHIIATYERAISDFQTLHTII 119
           C    +LL+  GADV+A+               Y G  PL + A   +          I+
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ--------PHIV 156

Query: 120 LDLTENG---AHMDTVNNKGLTP-------------IQATTTGVADLILRTLTKINLKCL 163
             LTENG   A +   +++G T                   T + DL+L    K+     
Sbjct: 157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216

Query: 164 AAKVITQNNIT 174
              ++  + ++
Sbjct: 217 LEALLNNDGLS 227

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
           + + LI  G  VN       +PLH                + +  L ++GA ++ V    
Sbjct: 74  SLRNLISQGWAVNIITADHVSPLHEACLGGH--------LSCVKILLKHGAQVNGVTADW 125

Query: 137 LTP 139
            TP
Sbjct: 126 HTP 128

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 9/54 (16%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMD 130
              LL+  GAD  AK+ +G  P+  +   E             L L   GA + 
Sbjct: 237 LACLLMDFGADTQAKNAEGKRPVE-LVPPES--------PLAQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 76  ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
           A  K L+  GADVN      ++PLH +                 L L + GA     N +
Sbjct: 204 ACVKKLLESGADVNQGKG-QDSPLHAVVRTAS-------EELACL-LMDFGADTQAKNAE 254

Query: 136 GLTP 139
           G  P
Sbjct: 255 GKRP 258

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 24/87 (27%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYER---------------AISDFQT-LHT--- 117
             K+L++ GA VN      +TPL                         SD  + +H    
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR 166

Query: 118 -----IILDLTENGAHMDTVNNKGLTP 139
                 +  L   G ++D   +   TP
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTP 193

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 23/86 (26%)

Query: 77  TTKLLIRCGADVNAKDYQ-----GNTPLHIIATYE----------RAISDFQTLHT---- 117
            +  L+  G+ + + D +     G+ P                   A+SD+  +H     
Sbjct: 10  HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIH 69

Query: 118 ----IILDLTENGAHMDTVNNKGLTP 139
                + +L   G  ++ +    ++P
Sbjct: 70  GHQLSLRNLISQGWAVNIITADHVSP 95

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
               L++ GAD    +    + LH  A   R       +    L+ T+    ++ ++  G
Sbjct: 181 LVAYLMKAGADPTIYNKSERSALH-QAAANRDFGMMVYM----LNSTKLKGDIEELDRNG 235

Query: 137 LTP 139
           +T 
Sbjct: 236 MTA 238

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 8/72 (11%)

Query: 68  DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA 127
           +  +       K  I  GADVNA D   NTPL +     R          +   L + GA
Sbjct: 139 EKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR-------RRLVAY-LMKAGA 190

Query: 128 HMDTVNNKGLTP 139
                N    + 
Sbjct: 191 DPTIYNKSERSA 202

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYER-AISDFQTLHTIILDLTENGAHMDTVNNK 135
            T+ + R   ++    +   T LH IA+      S+   +H         GA ++ ++  
Sbjct: 108 ITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKE-CIAAGADVNAMDCD 165

Query: 136 GLTP 139
             TP
Sbjct: 166 ENTP 169

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 77  TTKLLIR-CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             K L+   G++ + +D  G TP+ + A   R          +++ L + GA ++ V+  
Sbjct: 294 IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR--------IEVVMYLIQQGASVEAVDAT 345

Query: 136 GLTP 139
             T 
Sbjct: 346 DHTA 349

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 15/72 (20%)

Query: 76  ATTKLLIRCGADVN--------AKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA 127
           A+ KLL+  GA V+        ++ Y+G T LH  A           +  +   + E G+
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN-------MPIVKYLVGEKGS 304

Query: 128 HMDTVNNKGLTP 139
           + D  +  G TP
Sbjct: 305 NKDKQDEDGKTP 316

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 7/63 (11%), Positives = 15/63 (23%), Gaps = 10/63 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
                          + +    LH  A    AI++          +T    ++    +  
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEP---------ITRESVNIIDPRH-N 125

Query: 137 LTP 139
            T 
Sbjct: 126 RTV 128

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
               LI+ GA V A D   +T   +
Sbjct: 328 VVMYLIQQGASVEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 16/74 (21%)

Query: 77  TTKLLI---RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA------ 127
               ++   +   D+   D  G T L I+A  E        + +  L L E GA      
Sbjct: 214 MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG----RDQVASAKL-LVEKGAKVDYDG 268

Query: 128 --HMDTVNNKGLTP 139
               D+   KG T 
Sbjct: 269 AARKDSEKYKGRTA 282

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 25/88 (28%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI-------IATY--------ERAISDFQT--LHT-- 117
             + L+  GA+ NA +  G  P+ +       +A            A     T  +H   
Sbjct: 27  EVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86

Query: 118 ------IILDLTENGAHMDTVNNKGLTP 139
                  ++ L   GA +D  +  G  P
Sbjct: 87  REGFLDTLVVLHRAGARLDVRDAWGRLP 114

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
           T  +L R GA ++ +D  G  P+ +              H  +   L          N+ 
Sbjct: 93  TLVVLHRAGARLDVRDAWGRLPVDLAEELG---------HRDVARYLRAAAGGTRGSNHA 143

Query: 136 GLTPIQ 141
            +   +
Sbjct: 144 RIDAAE 149

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 7/63 (11%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +  +     VN  D  G+T L+                 + +  T+    ++  N  G
Sbjct: 88  WLRECLDNRVGVNGLDKAGSTALYWACHGGH-------KDIVEMLFTQPNIELNQQNKLG 140

Query: 137 LTP 139
            T 
Sbjct: 141 DTA 143

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 8/65 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             +LL+  GA  + ++ +      +      A        +++       A     N + 
Sbjct: 155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACA--------SLLKKKQGTDAVRTLSNAED 206

Query: 137 LTPIQ 141
               +
Sbjct: 207 YLDDE 211

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 77  TTKLLI-RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             ++L  +   ++N ++  G+T LH  A              + L L   GA  D  N +
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGY-------ADIVQL-LLAKGARTDLRNIE 172

Query: 136 GLTPIQ-ATTTGVADLI 151
                  AT    A L+
Sbjct: 173 KKLAFDMATNAACASLL 189

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.0 bits (113), Expect = 4e-07
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             + L+  GA+ + KD  G   +H  A           L T+   L E  A ++  +N+G
Sbjct: 52  IARRLLLRGANPDLKDRTGFAVIHDAARAGF-------LDTLQT-LLEFQADVNIEDNEG 103

Query: 137 LTP 139
             P
Sbjct: 104 NLP 106

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 46.2 bits (111), Expect = 6e-07
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
               L++   +VNA++  G T L ++      I+           L   GA+ D  +  G
Sbjct: 20  QLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARR---------LLLRGANPDLKDRTG 70

Query: 137 LTP 139
              
Sbjct: 71  FAV 73

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.9 bits (105), Expect = 4e-06
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH-MDTVNNK 135
           T + L+   ADVN +D +GN PLH+ A           L  +   L ++ A  +   N+K
Sbjct: 85  TLQTLLEFQADVNIEDNEGNLPLHLAAKEGH-------LRVVEF-LVKHTASNVGHRNHK 136

Query: 136 GLTP 139
           G T 
Sbjct: 137 GDTA 140

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 37.7 bits (89), Expect = 6e-04
 Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 77  TTKLLIRCGA-DVNAKDYQGNTPLHIIATY 105
             + L++  A +V  ++++G+T   +   Y
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLARLY 147

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.1 bits (114), Expect = 5e-07
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             K L++ G++    D  G + L   A       D  T   ++  L      +   ++  
Sbjct: 146 LVKHLVKHGSNRLYGDNMGESCLV-KAVKSVNNYDSGTFEALLDYL---YPCLILEDSMN 201

Query: 137 LTPIQATTTGVADLILRTLTKINLKCLAAKVITQNN 172
            T +                K  L  L   ++ + N
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 237

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 65  HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTE 124
             N   K        L       +NA+D  G+T L+I A             +I+  L +
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN--------ISIVDALLD 304

Query: 125 NGAHMDTVNNKGLTPIQ 141
            GA     N  GL P+ 
Sbjct: 305 YGADPFIANKSGLRPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 77  TTKLLIRCGADVNAK-DYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
                     ++N   D  GNTPLH + +             ++  L ++G++    +N 
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN--------LELVKHLVKHGSNRLYGDNM 163

Query: 136 GLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNN 172
           G + +      V +    T   + L  L   +I +++
Sbjct: 164 GESCLVKAVKSVNNYDSGTFEAL-LDYLYPCLILEDS 199

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYE 106
               L+  GAD    +  G  P+   A  E
Sbjct: 298 IVDALLDYGADPFIANKSGLRPVDFGAGLE 327

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.0 bits (113), Expect = 5e-07
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
            +  L+  GA+VN ++ +G TPL + + Y R          +   L E GA +   +  G
Sbjct: 116 MSYFLLEHGANVNDRNLEGETPLIVASKYGR-------SEIVKK-LLELGADISARDLTG 167

Query: 137 LTP 139
           LT 
Sbjct: 168 LTA 170

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
               L+     +  KD +G+T L       R       L      L   G++++T +  G
Sbjct: 50  AIDKLVENFDKLEDKDIEGSTALIWAVKNNR-------LGIAEK-LLSKGSNVNTKDFSG 101

Query: 137 LTP 139
            TP
Sbjct: 102 KTP 104

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.7 bits (107), Expect = 3e-06
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             + L+  G++VN KD+ G TPL     +                L E+GA+++  N +G
Sbjct: 83  IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY-------SEMSYF-LLEHGANVNDRNLEG 134

Query: 137 LTP 139
            TP
Sbjct: 135 ETP 137

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
             K L+  GAD++A+D  G T       +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIF 177

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
             ++L+  GADV AKD  G+TPLH+ A           L  + L L E GA +   +  G
Sbjct: 39  EVRILMANGADVAAKDKNGSTPLHLAARNGH-------LEVVKL-LLEAGADVXAQDKFG 90

Query: 137 LTPIQATT 144
            T    + 
Sbjct: 91  KTAFDISI 98

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 13/64 (20%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
            +  L+  G+ + +        L   A                +  L  NGA +   +  
Sbjct: 9   HSSGLVPRGSHMGSD---LGKKLLEAARAG---------QDDEVRILMANGADVAAKDKN 56

Query: 136 GLTP 139
           G TP
Sbjct: 57  GSTP 60

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.1 bits (113), Expect = 6e-07
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
             ++L      V+  D +GNTPL+ IA +             I   L + GA ++  N+ 
Sbjct: 21  VKEILQDTTYQVDEVDTEGNTPLN-IAVHNN--------DIEIAKALIDRGADINLQNSI 71

Query: 136 GLTP 139
             +P
Sbjct: 72  SDSP 75

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 43.6 bits (104), Expect = 9e-06
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 77  TTKLLIRCG-ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNN 134
             KLL+  G  D++ ++  G T L           +   L+  I+  L ENGA     +N
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGL----REGNQLYQDIVKLLMENGADQSIKDN 176

Query: 135 KGLTP 139
            G T 
Sbjct: 177 SGRTA 181

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
             KLL+  GAD + KD  G T +  
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
             K LI  GAD+N ++   ++P       
Sbjct: 54  IAKALIDRGADINLQNSISDSPYLYAGAQ 82

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 7/64 (10%)

Query: 77  TTKLLIRCGADVNAKDYQ-GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
               L++ GA + A     G T       Y    +D          L +    M  +N+ 
Sbjct: 102 ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD------CATYLADVEQSMGLMNSG 155

Query: 136 GLTP 139
            +  
Sbjct: 156 AVYA 159

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK- 135
               LI  GA+VN+ D  G TPLH  A+              +  L ++GA +       
Sbjct: 69  IVDFLITAGANVNSPDSHGWTPLHCAASCND-------TVICMA-LVQHGAAIFATTLSD 120

Query: 136 GLTP 139
           G T 
Sbjct: 121 GATA 124

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
             +  ++   D +  + +G T LH               +  I+D L   GA++++ ++ 
Sbjct: 36  VVQQAVKEMNDPSQPNEEGITALHNAICGA---------NYSIVDFLITAGANVNSPDSH 86

Query: 136 GLTP 139
           G TP
Sbjct: 87  GWTP 90

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 23/70 (32%)

Query: 79  KLLIRCGADVNAKD---YQGNTPLHIIATY------ERAISDFQTLHTIILDLTENGAHM 129
           + ++R                  L   A        ++A+                    
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK--------------EMNDP 47

Query: 130 DTVNNKGLTP 139
              N +G+T 
Sbjct: 48  SQPNEEGITA 57

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 14/69 (20%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA------HMD 130
             + L+  G D   +D++GNTPLH+                 +  LT++         + 
Sbjct: 60  IAEALLGAGCDPELRDFRGNTPLHLACEQGC--------LASVGVLTQSCTTPHLHSILK 111

Query: 131 TVNNKGLTP 139
             N  G T 
Sbjct: 112 ATNYNGHTC 120

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHI 101
              LL++CGADVN   YQG +P  +
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSPYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 77  TTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             +LL+  GADVNA++   G T LH+    +           ++  L + GA ++ V  +
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQN--------PDLVSLLLKCGADVNRVTYQ 183

Query: 136 GLTP 139
           G +P
Sbjct: 184 GYSP 187

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
           + +    A +N ++    TPLH+     +          I   L   G   +  + +G T
Sbjct: 29  RQVKGDLAFLNFQNNLQQTPLHLAVITNQ--------PEIAEALLGAGCDPELRDFRGNT 80

Query: 139 P 139
           P
Sbjct: 81  P 81

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
             + +I    D +  + +G T LH               HT I+  L + G +++  ++ 
Sbjct: 52  LVQRIIYEVDDPSLPNDEGITALHNAVCAG---------HTEIVKFLVQFGVNVNAADSD 102

Query: 136 GLTP 139
           G TP
Sbjct: 103 GWTP 106

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 33/140 (23%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATY-----------------ERAISDFQT---LH 116
             K L++ G +VNA D  G TPLH  A+                      SD QT     
Sbjct: 85  IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144

Query: 117 T--------IILDLTENGAHMDTVNNKGLTP-IQATTTGVADLILRTLTKINLKCLAAKV 167
                        L      M  +N   +            +L ++    + +     + 
Sbjct: 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDED 204

Query: 168 ITQNNIT----YKGLVPHDL 183
             +         +G VP +L
Sbjct: 205 EIEWWWARLNDKEGYVPRNL 224

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 8/63 (12%), Positives = 14/63 (22%), Gaps = 9/63 (14%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
           T    I  G  V          L   +              +   +          N++G
Sbjct: 20  TGSERIAHGMRVKFNPL-PLALLLDSSLEGE-------FDLVQR-IIYEVDDPSLPNDEG 70

Query: 137 LTP 139
           +T 
Sbjct: 71  ITA 73

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 77  TTKLLIRCG-ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
             +LL   G + VN +D QG TPL                   +L + + GA  D V+NK
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGH-------GDAAVLLVEKYGAEYDLVDNK 207

Query: 136 GLTPIQ-ATTTGVADLIL 152
           G      A    V    L
Sbjct: 208 GAKAEDVALNEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.4 bits (106), Expect = 6e-06
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 77  TTKLLI--RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN 134
             K L       D+N    QG T LH+    +           +   L ENGA +   + 
Sbjct: 87  VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW--------FEVSQFLIENGASVRIKDK 138

Query: 135 KGLTP 139
               P
Sbjct: 139 FNQIP 143

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 11/66 (16%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA---HMDTVN 133
             +LL    + +  KD  G  PLH   +++               L          D  +
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQA-------HEITSF-LLSKMENVNLDDYPD 69

Query: 134 NKGLTP 139
           + G TP
Sbjct: 70  DSGWTP 75

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.0 bits (100), Expect = 4e-05
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
            ++ LI  GA V  KD     PLH  A+ 
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASV 150

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 80  LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
            +I+ G  ++AK   GNT LH  A Y +           +  L +  A + TVN  G T 
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQ--------PDCLKLLLKGRALVGTVNEAGETA 262

Query: 140 IQ-ATTTGVAD 149
           +  A      +
Sbjct: 263 LDIARKKHHKE 273

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 10/63 (15%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
               L+  GA  N  +     PLH  AT E           + + L  +G      ++KG
Sbjct: 46  LVCTLLNAGALKNLLE--NEFPLHQAATLED-------TKIVKI-LLFSGLDDSQFDDKG 95

Query: 137 LTP 139
            T 
Sbjct: 96  NTA 98

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 11/65 (16%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
             K+L+  G D +  D +GNT L+  A            +   +    +    +      
Sbjct: 77  IVKILLFSGLDDSQFDDKGNTALY-YAVDSG--------NMQTVKLFVKKNWRLMFYGKT 127

Query: 136 GL-TP 139
           G  T 
Sbjct: 128 GWKTS 132

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 5/34 (14%), Positives = 12/34 (35%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAIS 110
             K++I    +  +  Y  +  +      +  IS
Sbjct: 236 IAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIIS 269

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 7/60 (11%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
              LL+      N  +     P   +A   + I        ++  L +   ++ + N + 
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIE-------MLQALFKYDINIYSANLEN 228

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 74  CAATTKLLIRCGADVNAKDYQ-GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
                +LL   GAD++ +D + G T LH+ A Y R          +   L E GA ++  
Sbjct: 88  SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR-------PEVVEA-LVELGADIEVE 139

Query: 133 NNKGLTP 139
           + +GLT 
Sbjct: 140 DERGLTA 146

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
             + L+  GAD+  +D +G T L +    
Sbjct: 125 VVEALVELGADIEVEDERGLTALELAREI 153

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.2 bits (104), Expect = 9e-06
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 40  LSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPL 99
           L+     +++ LHL V                         L++   +++ +  +G+T L
Sbjct: 162 LANGHEPDETALHLAVRSVDR------------TSLHIVDFLVQNSGNLDKQTGKGSTAL 209

Query: 100 HIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ 141
           H     + A          +  L    A ++  N  G TP+ 
Sbjct: 210 HYCCLTDNA--------ECLKLLLRGKASIEIANESGETPLD 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 74  CAATTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
                +LL   GAD++ +D   G T LH+ A Y R          +   L E GA ++  
Sbjct: 89  SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR-------PEVVEA-LVELGADIEVE 140

Query: 133 NNKGLTP 139
           + +GLT 
Sbjct: 141 DERGLTA 147

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 74  CAATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
                + L+  GAD+  +D +G T L +    
Sbjct: 123 RPEVVEALVELGADIEVEDERGLTALELAREI 154

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 80  LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
            L++ GA+VN  D  G  PLH                 +     + GA +   +++G  P
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGH--------TGLACLFLKRGADLGARDSEGRDP 304

Query: 140 IQ-ATTTGVADLI 151
           +  A  T  AD++
Sbjct: 305 LTIAMETANADIV 317

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 30/227 (13%), Positives = 70/227 (30%), Gaps = 66/227 (29%)

Query: 1   MEDNLVTSLYL-LVIL-------TKVIK----NISEEEEYRIYKLVFSLNKLSVASRQNQ 48
           +E      ++  L +        T ++     ++ + +   +   V  L+K S+  +Q +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPK 422

Query: 49  ----SLLHLCVNYETPVD---TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
               S+  + +  +  ++     H             + ++         D     P ++
Sbjct: 423 ESTISIPSIYLELKVKLENEYALH-------------RSIVDHYNIPKTFDSDDLIPPYL 469

Query: 102 ---IATY--------ERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTT--GVA 148
                ++        E           + LD          +  K    I+  +T    +
Sbjct: 470 DQYFYSHIGHHLKNIEHP-ERMTLFRMVFLDF-------RFLEQK----IRHDSTAWNAS 517

Query: 149 DLILRTLTKINL-KCLAAKVITQNNITYKGLVPHDLESFIELHGTAL 194
             IL TL ++   K      I  N+  Y+ LV + +  F+      L
Sbjct: 518 GSILNTLQQLKFYK----PYICDNDPKYERLV-NAILDFLPKIEENL 559

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.93
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.92
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
2rfa_A	232	Transient receptor potential cation channel subfa	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.91
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.91
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.91
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.91
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.91
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.91
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.9
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.9
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.9
2rfa_A	232	Transient receptor potential cation channel subfa	99.9
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.9
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.9
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.9
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.9
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.9
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.9
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.9
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.89
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.89
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.89
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.89
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.89
2etb_A	256	Transient receptor potential cation channel subfam	99.89
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.89
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.89
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.89
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.89
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.89
2pnn_A	273	Transient receptor potential cation channel subfa	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.88
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.88
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.87
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.87
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.87
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
2pnn_A	273	Transient receptor potential cation channel subfa	99.87
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.86
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.86
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.86
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.85
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.83
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.83
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.82
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.81
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.81
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.81
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.81
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.8
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.75
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.74
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.73
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.73
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.72
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.71
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.71
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.71
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.64

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=4.8e-28  Score=177.35  Aligned_cols=120  Identities=26%  Similarity=0.348  Sum_probs=86.5

Q ss_pred             hHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCC
Q psy8420           7 TSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGA   86 (199)
Q Consensus         7 t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga   86 (199)
                      ++|+.||..|+         .++|+.|++.|+++|.+|..|.||||+|+..               ++.+++++|++.|+
T Consensus         6 ~~L~~Aa~~G~---------~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~---------------~~~~~~~~ll~~ga   61 (169)
T 4gpm_A            6 KRLIEAAENGN---------KDRVKDLIENGADVNASDSDGRTPLHHAAEN---------------GHKEVVKLLISKGA   61 (169)
T ss_dssp             HHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCC---------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc---------------CCHHHHHHHHhccc
Confidence            57999999999         9999999999999999999999999999999               55566666666666


Q ss_pred             CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccc
Q psy8420          87 DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKI  158 (199)
Q Consensus        87 ~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~  158 (199)
                      +++.+|..|+||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.+++.
T Consensus        62 d~~~~d~~g~TpLh~A~~~g~~--------~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~  129 (169)
T 4gpm_A           62 DVNAKDSDGRTPLHHAAENGHK--------EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV  129 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             chhhhccCCCCHHHHHHHcCCH--------HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            6666666666666666666655        66666666666666666666666655    3445555555554443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.93  E-value=3.7e-26  Score=172.92  Aligned_cols=176  Identities=19%  Similarity=0.204  Sum_probs=146.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------D   62 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------~   62 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..++ ++                  +
T Consensus        22 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g   92 (223)
T 2f8y_A           22 DRTGETALHLAARYSR---------SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG   92 (223)
T ss_dssp             TTTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTC
T ss_pred             CCCCCchHHHHHHcCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            6789999999999999         999999999999999999999999999999988 32                  5


Q ss_pred             cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      .+|++.|+..++.+++++|+++|++++..|..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+
T Consensus        93 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~  164 (223)
T 2f8y_A           93 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV--------DAAVVLLKNGANKDMQNNREETPLFL  164 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCcCHHHH
Confidence            7889999999999999999999999999999999999999999999        99999999999999999999999999


Q ss_pred             ----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhccc
Q psy8420         143 ----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKT  197 (199)
Q Consensus       143 ----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  197 (199)
                          ...++++.|++.+.+.......+.........   .-..++.+++..+|+.....
T Consensus       165 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~---~~~~~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE---RMHHDIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH---TTCHHHHHHHHHTTCSSCC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHH---hcchHHHHHHHHcCCCcccc
Confidence                56678999999876654432111111111111   12456778888888876554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=4.9e-26  Score=178.28  Aligned_cols=125  Identities=19%  Similarity=0.202  Sum_probs=105.5

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |+.|.||||+|+..|+         .++++.|+..|++++.++..|.||+++|+..++ ++                 |.
T Consensus        83 d~~G~TpLh~A~~~g~---------~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~  153 (269)
T 4b93_B           83 SQDGSSPLHVAALHGR---------ADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGN  153 (269)
T ss_dssp             CTTSCCHHHHHHHTTC---------TTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCC
T ss_pred             CCCCCCHHHHHHHcCc---------HHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCC
Confidence            5678888888888888         788888888888888888888888888888776 22                 67


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT  143 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~  143 (199)
                      +|++.|+..++.+++++|+++|+++|.++..|.||||+|+..|+.        +++++|+++|++++.+|..|.||||++
T Consensus       154 TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~--------~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          154 TPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV--------FVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCH--------HHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            888888888888888888888888888888888888888888888        888888888888888888888888883

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.93  E-value=1e-25  Score=171.35  Aligned_cols=172  Identities=15%  Similarity=0.061  Sum_probs=139.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..++ ++                 |.
T Consensus        37 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  107 (231)
T 3aji_A           37 DQDSRTALHWACSAGH---------TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC  107 (231)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCc---------HHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCC
Confidence            5789999999999999         999999999999999999999999999999988 32                 57


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-  142 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-  142 (199)
                      +|++.|+..++.+++++|++.|++++..+..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+ 
T Consensus       108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A  179 (231)
T 3aji_A          108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL--------KMVHILLFYKASTNIQDTEGNTPLHLA  179 (231)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH--------HHHHHHHhcCCCccccCCCCCCHHHHH
Confidence            888899999999999999999999999999999999999999999        99999999999999999999999998 


Q ss_pred             ---ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhh
Q psy8420         143 ---TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTA  193 (199)
Q Consensus       143 ---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  193 (199)
                         ...++++.|++.+.+.......+.........   .-...+.+++..+|.+
T Consensus       180 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~---~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          180 CDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG---GLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH---HHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh---hHHHHHHHHHcccccc
Confidence               45678888888876654422211111111111   1244577788777765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=6.9e-26  Score=176.74  Aligned_cols=177  Identities=19%  Similarity=0.269  Sum_probs=145.7

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCC---cccccCCCchHHHHHHhcCC-CC---------------
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNK---LSVASRQNQSLLHLCVNYET-PV---------------   61 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~---i~~~~~~g~t~L~~a~~~~~-~~---------------   61 (199)
                      .|.+|.||||+|+..|+         .++++.|++.|++   ++.++..|.||||+|+..|+ ++               
T Consensus         5 ~d~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~   75 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQH---------EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE   75 (282)
T ss_dssp             CCTTCCCHHHHHHHTTC---------HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred             cCCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            37899999999999999         9999999999888   88899999999999999988 33               


Q ss_pred             --CcccccccccCCcHHHHHHHHhcCCC-----------------------------------------------CccCC
Q psy8420          62 --DTFHTNDVCKFPCAATTKLLIRCGAD-----------------------------------------------VNAKD   92 (199)
Q Consensus        62 --~~~~l~~~~~~~~~~~~~~Ll~~ga~-----------------------------------------------v~~~d   92 (199)
                        |.+|++.|+..++.+++++|+++|++                                               ++..+
T Consensus        76 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (282)
T 1oy3_D           76 RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN  155 (282)
T ss_dssp             TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC
T ss_pred             CCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcC
Confidence              67899999999999999999998765                                               77888


Q ss_pred             CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCC-CCCcccc----ccchHHHHHHhhcccchhHHHHHHH
Q psy8420          93 YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK-GLTPIQA----TTTGVADLILRTLTKINLKCLAAKV  167 (199)
Q Consensus        93 ~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~-g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~  167 (199)
                      ..|.||||+|+..++.        +++++|+++|++++..+.. |.||||+    ...++++.|++.+.+.......+..
T Consensus       156 ~~g~t~L~~A~~~g~~--------~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t  227 (282)
T 1oy3_D          156 YDGHTPLHVAVIHKDA--------EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT  227 (282)
T ss_dssp             TTSCCHHHHHHHTTCH--------HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCcCHHHHHHHcCCH--------HHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCC
Confidence            9999999999999999        9999999999999999865 9999999    5677899999987765543322221


Q ss_pred             HhhccccCCCCCchhHHHHHHHhhhhhccc
Q psy8420         168 ITQNNITYKGLVPHDLESFIELHGTALDKT  197 (199)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  197 (199)
                      ...+.+..   -...+.++|..+|++++..
T Consensus       228 pL~~A~~~---~~~~~v~~Ll~~ga~~~~~  254 (282)
T 1oy3_D          228 PLGSALLR---PNPILARLLRAHGAPEPED  254 (282)
T ss_dssp             HHHHHHTS---SCHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHc---CCcHHHHHHHHcCCCcCcC
Confidence            11111211   1356778889999988754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=6.4e-26  Score=168.35  Aligned_cols=125  Identities=26%  Similarity=0.324  Sum_probs=97.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..               ++.+++++|
T Consensus        32 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~L   87 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGM---------ENAIDKLVENFDKLEDKDIEGSTALIWAVKN---------------NRLGIAEKL   87 (192)
T ss_dssp             CTTCCCHHHHHHHHTC---------GGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHhccccccccccCccHHHHHHHc---------------CCHHHHHHH
Confidence            6789999999999999         8999999999999999999999999999999               666677777


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                      ++.|++++..|..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.+.+
T Consensus        88 l~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  159 (192)
T 2rfm_A           88 LSKGSNVNTKDFSGKTPLMWSIIFGYS--------EMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD  159 (192)
T ss_dssp             HHHTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHCCCCCCCCCCCCCcHHHHHHHcCCH--------HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            766777666666677777777666666        66777776677776666667777666    344566666666544


Q ss_pred             c
Q psy8420         158 I  158 (199)
Q Consensus       158 ~  158 (199)
                      .
T Consensus       160 ~  160 (192)
T 2rfm_A          160 I  160 (192)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=3.4e-25  Score=165.10  Aligned_cols=135  Identities=17%  Similarity=0.121  Sum_probs=92.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------D   62 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------~   62 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..++ ++                  |
T Consensus        36 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  106 (201)
T 3hra_A           36 DTEGNTPLNIAVHNND---------IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG  106 (201)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCC
Confidence            4567778888887777         777888888788877777777888888777765 22                  4


Q ss_pred             cccccccccCCcHHHHHHHHhcC-CCCccCCCCCCcHHHHHHhccC-----cccchhhHHHHHHHHHHcCCCCCCCCCCC
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCG-ADVNAKDYQGNTPLHIIATYER-----AISDFQTLHTIILDLTENGAHMDTVNNKG  136 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~g-a~v~~~d~~g~tpl~~a~~~~~-----~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g  136 (199)
                      .+|++.|+..++.+++++|++.| ++++.+|..|.||||+|+..+.     .        +++++|+++|++++.+|..|
T Consensus       107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~--------~~v~~Ll~~ga~~~~~~~~g  178 (201)
T 3hra_A          107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ--------DIVKLLMENGADQSIKDNSG  178 (201)
T ss_dssp             CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH--------HHHHHHHHTTCCTTCCCTTS
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH--------HHHHHHHHCCCCCCccCCCC
Confidence            56666666666666666666666 6666666666666666666555     4        66666666666666666666


Q ss_pred             CCcccc----ccchHHHHHHh
Q psy8420         137 LTPIQA----TTTGVADLILR  153 (199)
Q Consensus       137 ~tpl~~----~~~~~~~~ll~  153 (199)
                      .|||++    ...++++.|++
T Consensus       179 ~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          179 RTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHhHHHHHHh
Confidence            666666    34445555544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=9.8e-25  Score=153.63  Aligned_cols=120  Identities=25%  Similarity=0.222  Sum_probs=111.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..               ++.+++++|
T Consensus         7 ~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~~~~L   62 (137)
T 3c5r_A            7 NHRGETLLHIASIKGD---------IPSVEYLLQNGSDPNVKDHAGWTPLHEACNH---------------GHLKVVELL   62 (137)
T ss_dssp             CTTCCCHHHHHHHHTC---------HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence            6789999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHHHHHHh
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILR  153 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~~~ll~  153 (199)
                      +++|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||++++.......++.
T Consensus        63 l~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~  126 (137)
T 3c5r_A           63 LQHKALVNTTGYQNDSPLHDAAKNGHV--------DIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL  126 (137)
T ss_dssp             HHTTCCTTCCCGGGCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred             HHcCCcccCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence            999999999999999999999999999        9999999999999999999999999955544444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.92  E-value=1.3e-25  Score=171.66  Aligned_cols=140  Identities=21%  Similarity=0.218  Sum_probs=122.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..++ ++                   
T Consensus        42 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  112 (236)
T 1ikn_D           42 NNLQQTPLHLAVITNQ---------PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA  112 (236)
T ss_dssp             CTTCCCHHHHHHHTTC---------HHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhc
Confidence            4678899999999998         899999999999999999999999999998876 11                   


Q ss_pred             ----CcccccccccCCcHHHHHHHHhcCCCCccCCC-CCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCC
Q psy8420          62 ----DTFHTNDVCKFPCAATTKLLIRCGADVNAKDY-QGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG  136 (199)
Q Consensus        62 ----~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~-~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g  136 (199)
                          |.+|++.|+..++.+++++|+++|++++.++. .|.||||+|+..++.        +++++|+++|++++.+|..|
T Consensus       113 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g  184 (236)
T 1ikn_D          113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP--------DLVSLLLKCGADVNRVTYQG  184 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH--------HHHHHHHTTTCCSCCCCTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCcccCCC
Confidence                56788889999999999999999999999887 899999999999999        99999999999999999999


Q ss_pred             CCcccc----ccchHHHHHHhhcccc
Q psy8420         137 LTPIQA----TTTGVADLILRTLTKI  158 (199)
Q Consensus       137 ~tpl~~----~~~~~~~~ll~~~~~~  158 (199)
                      .|||++    ...++++.|++.+++.
T Consensus       185 ~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          185 YSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             CCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             CCHHHHHHccCchHHHHHHHHcchhh
Confidence            999998    4567788888876653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.92  E-value=3.9e-25  Score=172.45  Aligned_cols=145  Identities=24%  Similarity=0.214  Sum_probs=131.5

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..++ ++                   
T Consensus        42 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  112 (282)
T 1oy3_D           42 NDLGQTALHLAAILGE---------ASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY  112 (282)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHH
Confidence            5679999999999999         999999999999999999999999999998776 11                   


Q ss_pred             ---------------------------------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCC-C
Q psy8420          62 ---------------------------------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQ-G   95 (199)
Q Consensus        62 ---------------------------------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~-g   95 (199)
                                                                   |.+|++.|+..++.+++++|+++|++++..+.. |
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g  192 (282)
T 1oy3_D          113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG  192 (282)
T ss_dssp             -------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC
T ss_pred             hhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence                                                         457889999999999999999999999999865 9


Q ss_pred             CcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhHHH
Q psy8420          96 NTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKCL  163 (199)
Q Consensus        96 ~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~  163 (199)
                      .||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.+++......
T Consensus       193 ~tpL~~A~~~~~~--------~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  256 (282)
T 1oy3_D          193 RTPLHLAVEAQAA--------SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG  256 (282)
T ss_dssp             CCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-
T ss_pred             cCHHHHHHHcCCH--------HHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCC
Confidence            9999999999999        99999999999999999999999999    567789999999888665433

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=1.1e-24  Score=150.80  Aligned_cols=119  Identities=18%  Similarity=0.150  Sum_probs=108.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.||||+|+..+.         .++++.|++.|++++.++..|.||||+|+..               ++.+++++|
T Consensus         4 ~~~~~~~l~~A~~~~~---------~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~L   59 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGD---------LDEVKDYVAKGEDVNRTLEGGRKPLHYAADC---------------GQLEILEFL   59 (123)
T ss_dssp             ---CHHHHHHHHHTTC---------HHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT---------------TCHHHHHHH
T ss_pred             ccccchHHHHHHHcCC---------HHHHHHHHHcCCCcCccCCCCCcHHHHHHHc---------------CCHHHHHHH
Confidence            4678999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHHHHHH
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLIL  152 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~~~ll  152 (199)
                      ++.|++++.+|..|+||||+|+..++.        +++++|+++|++++.+|..|.||++++.......++
T Consensus        60 l~~g~~~~~~d~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll  122 (123)
T 3aaa_C           60 LLKGADINAPDKHHITPLLSAVYEGHV--------SCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL  122 (123)
T ss_dssp             HTTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred             HHcCCCCCcCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence            999999999999999999999999999        999999999999999999999999996544443433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=1.8e-24  Score=156.65  Aligned_cols=124  Identities=23%  Similarity=0.258  Sum_probs=69.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHH-cCCCcccccCCCchHHHHHHhcCC-CC-----------------C
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVF-SLNKLSVASRQNQSLLHLCVNYET-PV-----------------D   62 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~-~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~   62 (199)
                      |..|.||||.|+..|.         .++++.|++ .+.+++..+..|.||||+|+..++ ++                 |
T Consensus         5 ~~~~~~~l~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   75 (165)
T 3twr_A            5 NSEADRQLLEAAKAGD---------VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG   75 (165)
T ss_dssp             -CHHHHHHHHHHHHTC---------HHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cchhhHHHHHHHHhCC---------HHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCC
Confidence            3455566666666666         566666655 234555555555666666666522 00                 1


Q ss_pred             cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      .+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||+++
T Consensus        76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~  147 (165)
T 3twr_A           76 LVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY--------EICKLLLQHGADPTKKNRDGNTPLDL  147 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCTGGG
T ss_pred             CCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCcccCCCCCChhHh
Confidence            2222222222666666666666666666666666666666666666        66666666666666666666666665

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.92  E-value=2.5e-25  Score=172.07  Aligned_cols=142  Identities=23%  Similarity=0.250  Sum_probs=129.0

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------D   62 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------~   62 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..++ ++                  |
T Consensus        54 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  124 (253)
T 1yyh_A           54 DRTGETALHLAARYSR---------SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG  124 (253)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTC
T ss_pred             CCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCC
Confidence            6789999999999999         999999999999999999999999999999887 22                  6


Q ss_pred             cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      .+|++.|+..++.+++++|++.|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~tpL~~  196 (253)
T 1yyh_A          125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV--------DAAVVLLKNGANKDMQNNREETPLFL  196 (253)
T ss_dssp             CCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            7888999999999999999999999999999999999999999999        99999999999999999999999998


Q ss_pred             ----ccchHHHHHHhhcccchh
Q psy8420         143 ----TTTGVADLILRTLTKINL  160 (199)
Q Consensus       143 ----~~~~~~~~ll~~~~~~~~  160 (199)
                          ...++++.|++.+.+...
T Consensus       197 A~~~~~~~~v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          197 AAREGSYETAKVLLDHFANRDI  218 (253)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHCCCHHHHHHHHHcCCCccc
Confidence                566788889988766544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.9e-24  Score=152.16  Aligned_cols=120  Identities=22%  Similarity=0.251  Sum_probs=112.8

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      ..|.||||+|+..|+         .++++.|++.|++++.+|..|.||||+|+..               ++.+++++|+
T Consensus        12 ~~~~t~l~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll   67 (136)
T 2jab_A           12 SDLGKKLLEAARAGQ---------DDEVRILMANGADVNAKDEYGLTPLYLATAH---------------GHLEIVEVLL   67 (136)
T ss_dssp             CHHHHHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHHH
T ss_pred             ccccHHHHHHHHhCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---------------CCHHHHHHHH
Confidence            568999999999999         9999999999999999999999999999999               9999999999


Q ss_pred             hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      +.|++++..|..|.||||+|+..++.        +++++|+++|++++..|..|.|||++    ...++++.|++.
T Consensus        68 ~~g~~~~~~d~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           68 KNGADVNAVDAIGFTPLHLAAFIGHL--------EIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HcCCCCCcCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999999999999999        99999999999999999999999998    455667777654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.92  E-value=4.3e-25  Score=168.16  Aligned_cols=138  Identities=19%  Similarity=0.173  Sum_probs=124.3

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCC-CC--------------------
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYET-PV--------------------   61 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~-~~--------------------   61 (199)
                      .|.||||+|+..|+         .++++.|++. |++++.+|..|.||||+|+..|+ ++                    
T Consensus         2 ~g~t~L~~A~~~g~---------~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~   72 (232)
T 2rfa_A            2 IWESPLLLAAKEND---------VQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL   72 (232)
T ss_dssp             CTTCHHHHHHHTTC---------HHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT
T ss_pred             CCCCHHHHHHHcCC---------HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC
Confidence            58999999999999         9999999997 99999999999999999999988 32                    


Q ss_pred             --CcccccccccCCcHHHHHHHHhcCCCCccCCC-------------CCCcHHHHHHhccCcccchhhHHHHHHHHHHcC
Q psy8420          62 --DTFHTNDVCKFPCAATTKLLIRCGADVNAKDY-------------QGNTPLHIIATYERAISDFQTLHTIILDLTENG  126 (199)
Q Consensus        62 --~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~-------------~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g  126 (199)
                        |.+|++.|+..++.+++++|+++|++++..+.             .|.||||+|+..++.        +++++|+++|
T Consensus        73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g  144 (232)
T 2rfa_A           73 YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE--------EIVRLLIEHG  144 (232)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH--------HHHHHHHHTT
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCH--------HHHHHHHHCC
Confidence              56889999999999999999999999999875             799999999999999        9999999999


Q ss_pred             CCCCCCCCCCCCcccc----ccchHH----HHHHhhcccc
Q psy8420         127 AHMDTVNNKGLTPIQA----TTTGVA----DLILRTLTKI  158 (199)
Q Consensus       127 a~~~~~~~~g~tpl~~----~~~~~~----~~ll~~~~~~  158 (199)
                      ++++.+|..|.||||+    ...+++    +.|++.+.+.
T Consensus       145 a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          145 ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            9999999999999999    334444    7777776644

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=7.5e-25  Score=167.17  Aligned_cols=175  Identities=13%  Similarity=0.104  Sum_probs=136.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |.+|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..|+ ++                 +.
T Consensus         8 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   78 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGH---------VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS   78 (237)
T ss_dssp             SCCSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSC
T ss_pred             cCCCCCHHHHHHHcCc---------HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            6789999999999999         899999999999999999999999999999988 32                 56


Q ss_pred             ccccccccCCcHHHHHHHHhcC-CCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCG-ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~g-a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      +|++.|+..++.+++++|++.| ++++..+..|.||||+|+..++.        +++++|+++|++++..+..|.||||+
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L~~  150 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV--------DLVKLLLSKGSDINIRDNEENICLHW  150 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCccCCCCCCHHHH
Confidence            7888899999999999999988 88999999999999999999988        99999999999999999999999988


Q ss_pred             ----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420         143 ----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDK  196 (199)
Q Consensus       143 ----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  196 (199)
                          ...++++.|++.+.+.......+.......+. .  -..++..++..+|++++.
T Consensus       151 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~--~~~~~v~~Ll~~gad~~~  205 (237)
T 3b7b_A          151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR-E--NRYDCVVLFLSRDSDVTL  205 (237)
T ss_dssp             HHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH-T--TCHHHHHHHHTTTCCTTC
T ss_pred             HHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-h--CCHhHHHHHHHcCCCCCc
Confidence                55677888888765543321111000000011 0  123456777777777654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=9.1e-25  Score=153.79  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=112.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+.                ++.+++++|
T Consensus         9 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----------------~~~~~v~~L   63 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQ---------VETVRQLLEAGADPNALNRFGRRPIQVMMM----------------GSAQVAELL   63 (136)
T ss_dssp             CCCCSCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCTTTTTSTT----------------SCHHHHHHH
T ss_pred             CCCCccHHHHHHHcCC---------HHHHHHHHHcCCCcCCcCCCCCCHHHHHHc----------------CCHHHHHHH
Confidence            6789999999999999         999999999999999999999999998665                488999999


Q ss_pred             HhcCCCCccCCCC-CCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420          82 IRCGADVNAKDYQ-GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLT  156 (199)
Q Consensus        82 l~~ga~v~~~d~~-g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~  156 (199)
                      +++|++++.+|.. |.||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.++
T Consensus        64 l~~g~~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           64 LLHGAEPNCADPATLTRPVHDAAREGFL--------DTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHTCCSSCCBTTTTBCHHHHHHHHTCH--------HHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHCCCCCCCcCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999 99999999999999        99999999999999999999999998    45667777777654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=3.4e-24  Score=157.42  Aligned_cols=122  Identities=20%  Similarity=0.264  Sum_probs=71.0

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCC-CC-----------------Ccc
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYET-PV-----------------DTF   64 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~   64 (199)
                      .+.++||.|+..|+         .++++.|++. +.+++.++..|.||||+|+..++ ++                 |.+
T Consensus         4 ~~~~~l~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   74 (179)
T 3f6q_A            4 EFMDDIFTQCREGN---------AVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT   74 (179)
T ss_dssp             ---CCHHHHHHHTC---------HHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             HHHHHHHHHHHcCC---------HHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence            34556666666666         5666666655 44555566666666666666522 00                 222


Q ss_pred             cccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          65 HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        65 ~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      |++.|+..++.+++++|+++|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||+++
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~tpl~~  144 (179)
T 3f6q_A           75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD--------QVAEDLVANGALVSICNKYGEMPVDK  144 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCSSBCCTTSCCGGGG
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCcchhccCCCCcHHH
Confidence            22333333666666666666666666666666666666666666        66666666666666666666666666

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=2e-24  Score=157.36  Aligned_cols=123  Identities=23%  Similarity=0.319  Sum_probs=92.3

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      ..+.|+||.|+..|+         .++++.|++.|++++.++..|.||||+|+..               ++.+++++|+
T Consensus        12 ~~~~~~l~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll   67 (169)
T 2y1l_E           12 SDLGKKLLEAARAGR---------DDEVRILMANGADVNAEDASGWTPLHLAAFN---------------GHLEIVEVLL   67 (169)
T ss_dssp             -CHHHHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHHH
T ss_pred             CcccchHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc---------------CCHHHHHHHH
Confidence            467899999999999         9999999999999999999999999999999               6666666666


Q ss_pred             hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420          83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus        83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                      +.|++++..|..|.||||+|+..++.        +++++|+++|++++..|..|.||||+    ...++++.|++.+.+
T Consensus        68 ~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  138 (169)
T 2y1l_E           68 KNGADVNAVDHAGMTPLRLAALFGHL--------EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD  138 (169)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HcCCCCCccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            66666666666666666666666666        66666666666666666666666666    344556666665444

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=8.7e-25  Score=172.18  Aligned_cols=137  Identities=15%  Similarity=0.110  Sum_probs=80.6

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|+||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..|+ ++                 |.
T Consensus        56 ~~~g~t~L~~Aa~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~  126 (285)
T 3d9h_A           56 AVSDWSPMHEAAIHGH---------QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH  126 (285)
T ss_dssp             SCCSCCHHHHHHHTTC---------HHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCC
T ss_pred             CccCCCHHHHHHHcCC---------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC
Confidence            4556666666666666         666666666666666666666666666666665 22                 34


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-  142 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-  142 (199)
                      +|++.|+..++.+++++|++.|++++..+ .|.||||+|+..++.        +++++|+++|++++..|..|.||||+ 
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~--------~~v~~Ll~~g~~~~~~d~~g~t~L~~A  197 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHV--------ECVNSLIAYGGNIDHKISHLGTPLYLA  197 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCBTTTBCHHHHH
T ss_pred             CHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            55555555566666666666665555433 355666666655555        55666666666655555556666555 


Q ss_pred             ---ccchHHHHHHhhcc
Q psy8420         143 ---TTTGVADLILRTLT  156 (199)
Q Consensus       143 ---~~~~~~~~ll~~~~  156 (199)
                         ...++++.|++.+.
T Consensus       198 ~~~~~~~~v~~Ll~~ga  214 (285)
T 3d9h_A          198 CENQQRACVKKLLESGA  214 (285)
T ss_dssp             HHTTCHHHHHHHHHTTC
T ss_pred             HHcCcHHHHHHHHHCCC
Confidence               33445555555533

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.91  E-value=1.6e-24  Score=157.29  Aligned_cols=160  Identities=13%  Similarity=0.096  Sum_probs=119.8

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      .|.||||.|+..|.         .++++.|++.|.+++.++..|.||||+|+..               ++.+++++|++
T Consensus         2 ~~~t~L~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll~   57 (167)
T 3v31_A            2 ANSLSVHQLAAQGE---------MLYLATRIEQENVINHTDEEGFTPLMWAAAH---------------GQIAVVEFLLQ   57 (167)
T ss_dssp             TTCCCHHHHHHTTC---------HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHHHH
T ss_pred             CCcchHHHHHHCCC---------HHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC---------------CCHHHHHHHHH
Confidence            58899999999999         9999999999999999999999999999999               78888888888


Q ss_pred             cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420          84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKIN  159 (199)
Q Consensus        84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~  159 (199)
                      .|++++..+..|.||||+|+..++.        +++++|+++|++++..|..|.||||+    ...++++.|++.+.+..
T Consensus        58 ~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  129 (167)
T 3v31_A           58 NGADPQLLGKGRESALSLACSKGYT--------DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT  129 (167)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cCCCCCCcCCCCCcHHHHHHHcCCH--------HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            8888888888888888888888888        88888888888888888888888887    45567777777755543


Q ss_pred             hHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhcccc
Q psy8420         160 LKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKTF  198 (199)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  198 (199)
                      .....+..........   -..++.+++..++.+..+..
T Consensus       130 ~~~~~g~t~l~~A~~~---~~~~~~~~L~~~~~~~~~~~  165 (167)
T 3v31_A          130 IETDSGYNSMDLAVAL---GYRSVQQVIESHLLKLLQNI  165 (167)
T ss_dssp             CCCTTSCCHHHHHHHH---TCHHHHHHHHHHHHHHCSSC
T ss_pred             CcCCCCCCHHHHHHHc---CcHHHHHHHHHHHHHHHHHh
Confidence            3211111110011110   13446677777776665543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=5.2e-24  Score=146.91  Aligned_cols=121  Identities=29%  Similarity=0.351  Sum_probs=114.1

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      +|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..               ++.+++++|++
T Consensus         1 ~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~~~~Ll~   56 (126)
T 1n0r_A            1 NGRTPLHLAARNGH---------LEVVKLLLEAGADVNAKDKNGRTPLHLAARN---------------GHLEVVKLLLE   56 (126)
T ss_dssp             CCCCHHHHHHHHTC---------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHHHH
T ss_pred             CCccHHHHHHHcCc---------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc---------------CcHHHHHHHHH
Confidence            58999999999999         9999999999999999999999999999999               99999999999


Q ss_pred             cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420          84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLT  156 (199)
Q Consensus        84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~  156 (199)
                      .|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||+++    ...++++.|++.++
T Consensus        57 ~g~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           57 AGADVNAKDKNGRTPLHLAARNGHL--------EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             cCCCCcccCCCCCcHHHHHHHcChH--------HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            9999999999999999999999999        99999999999999999999999998    45667888877654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=9.4e-25  Score=157.51  Aligned_cols=124  Identities=15%  Similarity=0.145  Sum_probs=91.0

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |.....||||.|+..|+         .++++.|++.|++++.++..|.||||+|+.                ++.+++++
T Consensus         1 m~~~~~~~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~----------------~~~~~v~~   55 (162)
T 1ihb_A            1 MAEPWGNELASAAARGD---------LEQLTSLLQNNVNVNAQNGFGRTALQVMKL----------------GNPEIARR   55 (162)
T ss_dssp             ----CHHHHHHHHHHTC---------HHHHHHHTTSCCCTTCCCTTSCCHHHHCCS----------------SCHHHHHH
T ss_pred             CcchHhhHHHHHHHcCC---------HHHHHHHHhCCCCccccCccCccHHHHHHc----------------CcHHHHHH
Confidence            34567899999999999         999999999999999999999999999765                36666666


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLT  156 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~  156 (199)
                      |++.|++++.++..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.+.
T Consensus        56 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  127 (162)
T 1ihb_A           56 LLLRGANPDLKDRTGFAVIHDAARAGFL--------DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  127 (162)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccC
Confidence            6666666666666666777777666666        66666666666666666666777666    34556666666544


Q ss_pred             c
Q psy8420         157 K  157 (199)
Q Consensus       157 ~  157 (199)
                      .
T Consensus       128 ~  128 (162)
T 1ihb_A          128 S  128 (162)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.91  E-value=3.4e-24  Score=156.21  Aligned_cols=105  Identities=21%  Similarity=0.243  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhcc
Q psy8420          27 EYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYE  106 (199)
Q Consensus        27 ~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~  106 (199)
                      .++++.|++.|++++.++..|.||||+|+..               ++.+++++|+++|++++.+|..|.||||+|+..+
T Consensus        49 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  113 (172)
T 3v30_A           49 IETVRFLLEWGADPHILAKERESALSLASTG---------------GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN  113 (172)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT---------------TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCchhhcccCCCHHHHHHHC---------------CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4444444444444444444444444444444               6666666666666666666666666666666666


Q ss_pred             CcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420         107 RAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus       107 ~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      +.        +++++|+++|++++.+|..|.|||++    ...++++.|++.
T Consensus       114 ~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A          114 HV--------KCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             CH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CH--------HHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            66        66666666666666666666666665    334445555544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.91  E-value=7.3e-25  Score=171.98  Aligned_cols=136  Identities=19%  Similarity=0.140  Sum_probs=122.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCC-CcccccCCCchHHHHHHhcCC---------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLN-KLSVASRQNQSLLHLCVNYET---------------------   59 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~-~i~~~~~~g~t~L~~a~~~~~---------------------   59 (199)
                      |.+|.||||+|+..|+         .++++.|++.|+ +++.++..|.||||+|+....                     
T Consensus       108 d~~g~T~Lh~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~  178 (276)
T 4hbd_A          108 DSNGNTALHYSVSHAN---------FPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAK  178 (276)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCC
T ss_pred             CCCCCCHHHHHHHCCC---------HHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccc
Confidence            6889999999999999         999999999998 999999999999999994321                     


Q ss_pred             --CCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHH-cCCCCCCCCCCC
Q psy8420          60 --PVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTE-NGAHMDTVNNKG  136 (199)
Q Consensus        60 --~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g  136 (199)
                        .-|.+|++.|+..++.+++++|+++|++++.+|..|+||||+|+..++.        +++++|++ .|++++.+|..|
T Consensus       179 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~--------~iv~~Ll~~~gad~~~~d~~g  250 (276)
T 4hbd_A          179 ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHK--------EIAGLLLAVPSCDISLTDRDG  250 (276)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHTSTTCCTTCCCTTS
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH--------HHHHHHHhcCCCCCcCcCCCC
Confidence              1177999999999999999999999999999999999999999999999        99999999 899999999999


Q ss_pred             CCcccc----ccchHHHHHHhh
Q psy8420         137 LTPIQA----TTTGVADLILRT  154 (199)
Q Consensus       137 ~tpl~~----~~~~~~~~ll~~  154 (199)
                      .|||++    ...++++.|++.
T Consensus       251 ~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          251 STALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhc
Confidence            999998    556777777776

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=1.5e-24  Score=156.17  Aligned_cols=128  Identities=16%  Similarity=0.124  Sum_probs=114.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      ++.|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+ .               ++.+++++|
T Consensus         9 ~~~~~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~---------------~~~~~v~~L   63 (156)
T 1bi7_B            9 MEPSADWLATAAARGR---------VEEVRALLEAGANPNAPNSYGRRPIQVMM-M---------------GSARVAELL   63 (156)
T ss_dssp             -CCSTTHHHHHHHHTC---------HHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T---------------TCHHHHHHH
T ss_pred             CccchHHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c---------------CCHHHHHHH
Confidence            4678999999999999         99999999999999999999999999985 6               799999999


Q ss_pred             HhcCCCCccCCCCCCc-HHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420          82 IRCGADVNAKDYQGNT-PLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLT  156 (199)
Q Consensus        82 l~~ga~v~~~d~~g~t-pl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~  156 (199)
                      +++|++++.+|..|.| |||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.+.
T Consensus        64 l~~g~~~~~~d~~g~ttpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga  135 (156)
T 1bi7_B           64 LLHGAEPNCADPATLTRPVHDAAREGFL--------DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG  135 (156)
T ss_dssp             HTTTCCCCCCCTTTCCCHHHHHHHHTCH--------HHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-
T ss_pred             HHcCCCCCCcCCCCCcHHHHHHHHCCCH--------HHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC
Confidence            9999999999999999 99999999999        99999999999999999999999999    56778889998877


Q ss_pred             cchhHH
Q psy8420         157 KINLKC  162 (199)
Q Consensus       157 ~~~~~~  162 (199)
                      +.....
T Consensus       136 ~~~~~~  141 (156)
T 1bi7_B          136 GTRGSN  141 (156)
T ss_dssp             ------
T ss_pred             CCCccC
Confidence            765543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.91  E-value=2.2e-24  Score=164.03  Aligned_cols=136  Identities=19%  Similarity=0.200  Sum_probs=123.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..++ ++                 +.
T Consensus        70 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  140 (231)
T 3aji_A           70 DDAGWSPLHIAASAGX---------DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA  140 (231)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCH---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            5689999999999999         999999999999999999999999999999988 22                 67


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT  143 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~  143 (199)
                      +|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||++++
T Consensus       141 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~A  212 (231)
T 3aji_A          141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV--------EEAKFLVTQGASIYIENKEEKTPLQVA  212 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCTTSCCHHHHS
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCH--------HHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            899999999999999999999999999999999999999999999        999999999999999999999999994


Q ss_pred             c----chHHHHHHhh
Q psy8420         144 T----TGVADLILRT  154 (199)
Q Consensus       144 ~----~~~~~~ll~~  154 (199)
                      .    .++++.|.+.
T Consensus       213 ~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          213 KGGLGLILKRLAEGE  227 (231)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHccc
Confidence            3    2344444444

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=170.35  Aligned_cols=174  Identities=14%  Similarity=0.109  Sum_probs=140.9

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC----------------Cc
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV----------------DT   63 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~----------------~~   63 (199)
                      .|..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..++ ++                +.
T Consensus        88 ~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~  158 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGH---------LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA  158 (285)
T ss_dssp             ECTTCCCHHHHHHHTTC---------HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTS
T ss_pred             cCCCCCCHHHHHHHCCc---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCC
Confidence            04679999999999999         999999999999999999999999999999988 33                57


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-  142 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-  142 (199)
                      +|++.|+..++.+++++|++.|++++.+|..|.||||+|+..++.        +++++|++.|++++. +..|.||||+ 
T Consensus       159 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~-~~~g~t~L~~A  229 (285)
T 3d9h_A          159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR--------ACVKKLLESGADVNQ-GKGQDSPLHAV  229 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH--------HHHHHHHHTTCCTTC-CBTTBCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH--------HHHHHHHHCCCCCCC-CCCCCCHHHHH
Confidence            899999999999999999999999999999999999999999999        999999999999995 8899999999 


Q ss_pred             ---ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHh-hhhhccc
Q psy8420         143 ---TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELH-GTALDKT  197 (199)
Q Consensus       143 ---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~  197 (199)
                         ...++++.|++.+.+.......+........    . ...+..++..+ |+++++.
T Consensus       230 ~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~----~-~~~~~~~Ll~~~~a~l~~~  283 (285)
T 3d9h_A          230 VRTASEELACLLMDFGADTQAKNAEGKRPVELVP----P-ESPLAQLFLEREGASLPKP  283 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC----T-TSHHHHHHHHHC-------
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc----C-ccHHHHHHHHhhccCCCCC
Confidence               5677899999998776654332322222222    1 13456666666 8877653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.91  E-value=3.1e-24  Score=169.07  Aligned_cols=139  Identities=15%  Similarity=0.187  Sum_probs=78.9

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cccc
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTFH   65 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~~   65 (199)
                      .|.||||.|+..|+         .++++.|++.|++++.++..|.||||+|+..|+ ++                 |.+|
T Consensus        39 ~~~t~l~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp  109 (299)
T 1s70_B           39 DDGAVFLAACSSGD---------TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP  109 (299)
T ss_dssp             CHHHHHHHHHHHTC---------HHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCccHHHHHHHcCC---------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            44555555555555         555555555555555555555555555555555 11                 3455


Q ss_pred             ccccccCCcHHHHHHHHhcCCCCccCC-----------------------------------------------------
Q psy8420          66 TNDVCKFPCAATTKLLIRCGADVNAKD-----------------------------------------------------   92 (199)
Q Consensus        66 l~~~~~~~~~~~~~~Ll~~ga~v~~~d-----------------------------------------------------   92 (199)
                      ++.|+..++.+++++|+++|++++..+                                                     
T Consensus       110 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (299)
T 1s70_B          110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC
Confidence            555555555555555555555554433                                                     


Q ss_pred             -------CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420          93 -------YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKIN  159 (199)
Q Consensus        93 -------~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~  159 (199)
                             ..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.+++..
T Consensus       190 ~~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~  259 (299)
T 1s70_B          190 INDVRHAKSGGTALHVAAAKGYT--------EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME  259 (299)
T ss_dssp             CCCCCCTTTCCCHHHHHHHHTCH--------HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cchhhhcCCCCCHHHHHHHCCcH--------HHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence                   2345566666666666        66666666666666666666666665    34455666666655443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.91  E-value=1e-24  Score=170.71  Aligned_cols=144  Identities=22%  Similarity=0.253  Sum_probs=109.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      +..|.||||.|+..+..        ..+++.|+..|+++|.+|..|.||||+|+..|+ ++                 |.
T Consensus        49 ~~~~~t~L~~a~~~~~~--------~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~  120 (269)
T 4b93_B           49 DPEFCHPLCQCPKCAPA--------QKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA  120 (269)
T ss_dssp             ----------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCC
T ss_pred             CccCCCHHHHHHHhCCH--------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCC
Confidence            45688999999988871        357888999999999999999999999999998 43                 67


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-  142 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-  142 (199)
                      +|++.++..++.+++++|++.|++++.+|..|.||||+|+..|+.        +++++|+++|++++.++..|.||||+ 
T Consensus       121 t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~--------~~v~~Ll~~gadvn~~~~~g~t~Lh~A  192 (269)
T 4b93_B          121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH--------ELVALLLQHGASINASNNKGNTALHEA  192 (269)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG--------GGHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH--------HHHHHHHHCCCCCCccccCCCcHHHHH
Confidence            889999999999999999999999999999999999999999999        99999999999999999999999999 


Q ss_pred             ---ccchHHHHHHhhcccchhH
Q psy8420         143 ---TTTGVADLILRTLTKINLK  161 (199)
Q Consensus       143 ---~~~~~~~~ll~~~~~~~~~  161 (199)
                         ...++++.|++.+++....
T Consensus       193 ~~~g~~~~v~~Ll~~Gad~~~~  214 (269)
T 4b93_B          193 VIEKHVFVVELLLLHGASVQVL  214 (269)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHcCCHHHHHHHHHCCCCCCCc
Confidence               5677899999998776554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=8.1e-24  Score=151.60  Aligned_cols=119  Identities=22%  Similarity=0.198  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cccccc
Q psy8420           6 VTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTFHTN   67 (199)
Q Consensus         6 ~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~~l~   67 (199)
                      .|+||.|+..|+         .++++.|++.|.+++ ++..|.||||+|+..|+ ++                 |.+|++
T Consensus         3 ~~~L~~A~~~g~---------~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   72 (153)
T 1awc_B            3 GKKLLEAARAGQ---------DDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHTC---------HHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             cHHHHHHHHcCC---------HHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            455666666655         555566665555554 34555566666555511 00                 111111


Q ss_pred             ccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        68 ~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      .|+..++.+++++|+++|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||+++
T Consensus        73 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~  139 (153)
T 1awc_B           73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ--------EVVELLIKYGADVHTQSKFCKTAFDI  139 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCccccCCCCCCHHHH
Confidence            11111555555555555555555555555555555555555        55555555555555555555555555

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.91  E-value=5.4e-24  Score=161.40  Aligned_cols=143  Identities=18%  Similarity=0.162  Sum_probs=125.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcC--CCccc-ccCCCchHHHHHHhcCC-CC----------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSL--NKLSV-ASRQNQSLLHLCVNYET-PV----------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g--~~i~~-~~~~g~t~L~~a~~~~~-~~----------------   61 (199)
                      |..|.||||+|+..++         .++++.|++.|  .+++. ++..|.||||+|+..++ ++                
T Consensus        33 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  103 (228)
T 2dzn_A           33 DQDGRIPLHWSVSFQA---------HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI  103 (228)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccC
Confidence            6789999999999999         89999999999  55666 77899999999998887 22                


Q ss_pred             ---CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC-CCCCCCCCCCC
Q psy8420          62 ---DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG-AHMDTVNNKGL  137 (199)
Q Consensus        62 ---~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g-a~~~~~~~~g~  137 (199)
                         |.+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++.        +++++|++.| ++++.+|..|.
T Consensus       104 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~d~~g~  175 (228)
T 2dzn_A          104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL--------KLIELLCGLGKSAVNWQDKQGW  175 (228)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH--------HHHHHHHTTTCCCSCCCCTTSC
T ss_pred             CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH--------HHHHHHHhcCcccccCcCCCCC
Confidence               56788889999999999999999999999999999999999999999        9999999999 99999999999


Q ss_pred             Ccccc----ccchHHHHHH-hhcccchhH
Q psy8420         138 TPIQA----TTTGVADLIL-RTLTKINLK  161 (199)
Q Consensus       138 tpl~~----~~~~~~~~ll-~~~~~~~~~  161 (199)
                      ||||+    ...++++.|+ +.+.+....
T Consensus       176 t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~  204 (228)
T 2dzn_A          176 TPLFHALAEGHGDAAVLLVEKYGAEYDLV  204 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHCCCSCCB
T ss_pred             CHHHHHHHcCCHHHHHHHHHhcCCCCCcc
Confidence            99998    5667889999 766665543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.91  E-value=3.4e-24  Score=163.63  Aligned_cols=175  Identities=21%  Similarity=0.288  Sum_probs=127.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHH----cCCCcccccCCCchHHHHHHhcCC-CC---------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVF----SLNKLSVASRQNQSLLHLCVNYET-PV---------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~----~g~~i~~~~~~g~t~L~~a~~~~~-~~---------------   61 (199)
                      |.+|.||||+|+..|+         .++++.|++    .|.+++.++..|.||||+|+..|+ ++               
T Consensus         6 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   76 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGN---------LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD   76 (241)
T ss_dssp             -CTTCCHHHHHHHTTC---------HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCCcHHHHHHHcCC---------HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence            6788999999999998         888888876    688888888889999999988887 22               


Q ss_pred             --CcccccccccCCcHHHHHHHHhcCC----CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCC-C
Q psy8420          62 --DTFHTNDVCKFPCAATTKLLIRCGA----DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN-N  134 (199)
Q Consensus        62 --~~~~l~~~~~~~~~~~~~~Ll~~ga----~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~-~  134 (199)
                        |.+|++.|+..++.+++++|++.|+    +++..+..|.||||+|+..++.        +++++|++.|++++..+ .
T Consensus        77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~  148 (241)
T 1k1a_A           77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ--------ETVQLLLERGADIDAVDIK  148 (241)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCH--------HHHHHHHHcCCCccccccc
Confidence              5677888888888888888888876    7888888888888888888888        88888888888888887 7


Q ss_pred             CCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420         135 KGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDK  196 (199)
Q Consensus       135 ~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  196 (199)
                      .|.||||+    ...++++.|++.+.+.......+.....+.+.. +  ..++.+++..+|++++.
T Consensus       149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~--~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR-G--LLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH-T--CHHHHHHHHHTTCCTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-C--CHHHHHHHHhcCCCCCC
Confidence            78888887    456678888877655433211111000000100 1  23456677777777654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.91  E-value=5.4e-24  Score=161.38  Aligned_cols=134  Identities=18%  Similarity=0.181  Sum_probs=115.6

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccc-ccCCCchHHHHHHhcCC-CC--------------------C
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV-ASRQNQSLLHLCVNYET-PV--------------------D   62 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~-~~~~g~t~L~~a~~~~~-~~--------------------~   62 (199)
                      |.||||+|+..|+         .++++.|++.|.++.. ++..|.||||+|+..|+ ++                    |
T Consensus         2 g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g   72 (228)
T 2dzn_A            2 SNYPLHQACMENE---------FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG   72 (228)
T ss_dssp             -CCHHHHHHHTTC---------HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTS
T ss_pred             CccHHHHHHHhCC---------HHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCC
Confidence            6899999999999         8999999998877654 78899999999998887 22                    4


Q ss_pred             cccccccccCCcHHHHHHHHhcC--CCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcc
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCG--ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI  140 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~g--a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  140 (199)
                      .+|++.|+..++.+++++|+++|  ++++..+..|.||||+|+..++.        +++++|+++|++++.+|..|.|||
T Consensus        73 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L  144 (228)
T 2dzn_A           73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF--------EVSQFLIENGASVRIKDKFNQIPL  144 (228)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCTTSCCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCH--------hHHHHHHHcCCCccccCCCCCCHH
Confidence            57888899999999999999988  88888899999999999999999        999999999999999999999999


Q ss_pred             cc----ccchHHHHHHhhc
Q psy8420         141 QA----TTTGVADLILRTL  155 (199)
Q Consensus       141 ~~----~~~~~~~~ll~~~  155 (199)
                      |+    ...++++.|++.+
T Consensus       145 ~~A~~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A          145 HRAASVGSLKLIELLCGLG  163 (228)
T ss_dssp             HHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHcCCHHHHHHHHhcC
Confidence            98    4667888888876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.91  E-value=1.2e-24  Score=176.38  Aligned_cols=139  Identities=16%  Similarity=0.167  Sum_probs=129.0

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC---------------Cccc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV---------------DTFH   65 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~---------------~~~~   65 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..|+ ++               |.+|
T Consensus        17 d~~g~t~L~~Aa~~g~---------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~   87 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQ---------TDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP   87 (364)
T ss_dssp             CHHHHHHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH
Confidence            6789999999999999         999999999999999999999999999999998 33               6789


Q ss_pred             ccccccCCcHHHHHHHHhc----CCCCcc-----------------CCCCCCcHHHHHHhcc--CcccchhhHHHHHHHH
Q psy8420          66 TNDVCKFPCAATTKLLIRC----GADVNA-----------------KDYQGNTPLHIIATYE--RAISDFQTLHTIILDL  122 (199)
Q Consensus        66 l~~~~~~~~~~~~~~Ll~~----ga~v~~-----------------~d~~g~tpl~~a~~~~--~~~~~~~~~~~~~~~L  122 (199)
                      ++.|+..++.+++++|++.    |++++.                 .+..|.||||+|+..+  +.        +++++|
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~--------~~v~~L  159 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL--------EMIKIL  159 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGH--------HHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchH--------HHHHHH
Confidence            9999999999999999998    888887                 8899999999999999  89        999999


Q ss_pred             HHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420         123 TENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus       123 l~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                      +++|++++..|..|.||||+    ...++++.|++.+.+
T Consensus       160 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPS  198 (364)
T ss_dssp             HHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSC
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            99999999999999999998    567789999987555

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.91  E-value=6.1e-24  Score=162.22  Aligned_cols=142  Identities=21%  Similarity=0.251  Sum_probs=128.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..++ ++                   
T Consensus        43 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  113 (241)
T 1k1a_A           43 NNLRQTPLHLAVITTL---------PSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN  113 (241)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC
T ss_pred             cccCCCHHHHHHHcCC---------HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccC
Confidence            5679999999999999         999999999999999999999999999999887 22                   


Q ss_pred             --CcccccccccCCcHHHHHHHHhcCCCCccCC-CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCC
Q psy8420          62 --DTFHTNDVCKFPCAATTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT  138 (199)
Q Consensus        62 --~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d-~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  138 (199)
                        +.+|++.|+..++.+++++|++.|++++..+ ..|.||||+|+..++.        +++++|+++|++++..|..|.|
T Consensus       114 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t  185 (241)
T 1k1a_A          114 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL--------SMVQLLLQHGANVNAQMYSGSS  185 (241)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCBCTTSCB
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCC
Confidence              5678888999999999999999999999998 8899999999999999        9999999999999999999999


Q ss_pred             cccc----ccchHHHHHHhhcccchh
Q psy8420         139 PIQA----TTTGVADLILRTLTKINL  160 (199)
Q Consensus       139 pl~~----~~~~~~~~ll~~~~~~~~  160 (199)
                      |||+    ...++++.|++.+.+...
T Consensus       186 ~L~~A~~~~~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          186 ALHSASGRGLLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            9999    566788899988766543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.90  E-value=3.9e-24  Score=165.33  Aligned_cols=142  Identities=18%  Similarity=0.145  Sum_probs=121.8

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccc----ccCCCchHHHHHHhc---CC-CC--------------
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV----ASRQNQSLLHLCVNY---ET-PV--------------   61 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~----~~~~g~t~L~~a~~~---~~-~~--------------   61 (199)
                      .|.||||+|+..|++...     ..+++.++..|++++.    ++..|.||||+|+..   |+ ++              
T Consensus         1 ~G~t~L~~A~~~g~~~~v-----~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~   75 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEEL-----TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNP   75 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGG-----TTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCS
T ss_pred             CCccHHHHHHHcCCHHHH-----HHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccch
Confidence            489999999999992110     1367778889999998    899999999999998   77 33              


Q ss_pred             --------------CcccccccccCCcHHHHHHHHhcCCCCccCCCC-------------CCcHHHHHHhccCcccchhh
Q psy8420          62 --------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQ-------------GNTPLHIIATYERAISDFQT  114 (199)
Q Consensus        62 --------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~-------------g~tpl~~a~~~~~~~~~~~~  114 (199)
                                    |.+|++.|+..++.+++++|+++|++++..+..             |.||||+|+..++.      
T Consensus        76 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~------  149 (256)
T 2etb_A           76 KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW------  149 (256)
T ss_dssp             SCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCH------
T ss_pred             hhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCH------
Confidence                          457899999999999999999999999999886             99999999999999      


Q ss_pred             HHHHHHHHHH---cCCCCCCCCCCCCCccccc------cch-------HHHHHHhhcccc
Q psy8420         115 LHTIILDLTE---NGAHMDTVNNKGLTPIQAT------TTG-------VADLILRTLTKI  158 (199)
Q Consensus       115 ~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~------~~~-------~~~~ll~~~~~~  158 (199)
                        +++++|++   .|++++.+|..|.||||++      ..+       +++.|++.+.+.
T Consensus       150 --~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          150 --DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             --HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence              99999999   9999999999999999982      122       777888875554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.90  E-value=1.6e-23  Score=151.97  Aligned_cols=121  Identities=21%  Similarity=0.258  Sum_probs=114.6

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..               ++.+++++|
T Consensus        33 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~L   88 (167)
T 3v31_A           33 DEEGFTPLMWAAAHGQ---------IAVVEFLLQNGADPQLLGKGRESALSLACSK---------------GYTDIVKML   88 (167)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---------------TCHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCC---------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc---------------CCHHHHHHH
Confidence            5789999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      +++|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||+++    ...++++.|++.
T Consensus        89 l~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           89 LDCGVDVNEYDWNGGTPLLYAVHGNHV--------KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             HHHTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHCCCCCCcCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            999999999999999999999999999        99999999999999999999999998    556677777776

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.90  E-value=9.9e-24  Score=159.55  Aligned_cols=141  Identities=13%  Similarity=0.073  Sum_probs=126.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCC-CcccccCCCchHHHHHHhcCC-CC-----------------C
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLN-KLSVASRQNQSLLHLCVNYET-PV-----------------D   62 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~-~i~~~~~~g~t~L~~a~~~~~-~~-----------------~   62 (199)
                      |..|.||||+|+..++         .++++.|++.+. +++.++..|.||||+|+..++ ++                 |
T Consensus        55 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  125 (223)
T 2f8y_A           55 DNMGRTPLHAAVSADA---------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG  125 (223)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCC
Confidence            5678999999999999         899999999876 888889999999999998888 22                 6


Q ss_pred             cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      .+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++.        +++++|+++|++++..|..|.||+++
T Consensus       126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~  197 (223)
T 2f8y_A          126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY--------ETAKVLLDHFANRDITDHMDRLPRDI  197 (223)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH--------HHHHHHHHcCCCCccccccCCCHHHH
Confidence            7889999999999999999999999999999999999999999999        99999999999999999999999998


Q ss_pred             ----ccchHHHHHHhhcccch
Q psy8420         143 ----TTTGVADLILRTLTKIN  159 (199)
Q Consensus       143 ----~~~~~~~~ll~~~~~~~  159 (199)
                          ...++++.|++.+....
T Consensus       198 A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          198 AQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHHhcchHHHHHHHHcCCCcc
Confidence                55678888888765543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.90  E-value=3.8e-24  Score=162.86  Aligned_cols=139  Identities=22%  Similarity=0.201  Sum_probs=123.0

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCc-----ccccCCCchHHHHHHhcCC-CC--------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKL-----SVASRQNQSLLHLCVNYET-PV--------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i-----~~~~~~g~t~L~~a~~~~~-~~--------------   61 (199)
                      |..|.||||+|+..|+         .++++.|++.|+++     +.++..|.||||+|+..++ ++              
T Consensus        34 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  104 (232)
T 2rfa_A           34 GAMGETALHIAALYDN---------LEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR  104 (232)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcc
Confidence            5789999999999999         89999999999887     6677789999999999887 22              


Q ss_pred             ----------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHH----HH
Q psy8420          62 ----------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTII----LD  121 (199)
Q Consensus        62 ----------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~----~~  121 (199)
                                      |.+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++.        +++    ++
T Consensus       105 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~--------~~~~~i~~~  176 (232)
T 2rfa_A          105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNK--------TFACQMYNL  176 (232)
T ss_dssp             CCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCH--------HHHHHHHHH
T ss_pred             cCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCh--------HHHHHHHHH
Confidence                            45688889999999999999999999999999999999999999988        766    99


Q ss_pred             HHHcCCCC------CCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420         122 LTENGAHM------DTVNNKGLTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus       122 Ll~~ga~~------~~~~~~g~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                      |+++|++.      +.+|..|.||||+    ...++++.|++.+..
T Consensus       177 Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          177 LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             HHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            99999988      5899999999999    566788888887544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.90  E-value=9.9e-24  Score=163.11  Aligned_cols=136  Identities=14%  Similarity=0.092  Sum_probs=123.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCC-CcccccCCCchHHHHHHhcCC-CC-----------------C
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLN-KLSVASRQNQSLLHLCVNYET-PV-----------------D   62 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~-~i~~~~~~g~t~L~~a~~~~~-~~-----------------~   62 (199)
                      |..|.||||+|+..++         .++++.|++.|. +++.++..|.||||+|+..++ ++                 |
T Consensus        87 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g  157 (253)
T 1yyh_A           87 DNMGRTPLHAAVSADA---------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG  157 (253)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence            5779999999999999         999999999986 899999999999999999988 33                 6


Q ss_pred             cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      .+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||+++
T Consensus       158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~d~~g~tpl~~  229 (253)
T 1yyh_A          158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY--------ETAKVLLDHFANRDITDHMDRLPRDI  229 (253)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCH--------HHHHHHHHcCCCccccccCCCCHHHH
Confidence            8999999999999999999999999999999999999999999999        99999999999999999999999999


Q ss_pred             ----ccchHHHHHHhh
Q psy8420         143 ----TTTGVADLILRT  154 (199)
Q Consensus       143 ----~~~~~~~~ll~~  154 (199)
                          ...++++.|...
T Consensus       230 A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          230 AQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HHHTTCHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHH
Confidence                455566666554

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.90  E-value=5.7e-24  Score=155.62  Aligned_cols=114  Identities=19%  Similarity=0.206  Sum_probs=95.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+..+.         .++++.|++.|++++.+|..|.||||+|+..|+ ++                 |+
T Consensus        34 d~~g~t~l~~a~~~~~---------~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~  104 (169)
T 4gpm_A           34 DSDGRTPLHHAAENGH---------KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR  104 (169)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCC
Confidence            6788999999999998         889999999999999999999999999998877 22                 67


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCC
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV  132 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  132 (199)
                      +|++.|+..++.+++++|+++|++++.+|..|+||||+|+..++.        +++++|+++||+++..
T Consensus       105 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~--------~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A          105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE--------EVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHTC-------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCcCCC
Confidence            888888888999999999999999999999999999999999988        9999999999988653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=5.6e-24  Score=170.73  Aligned_cols=125  Identities=22%  Similarity=0.198  Sum_probs=115.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC----CC----------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET----PV----------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~----~~----------------   61 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..|+    ++                
T Consensus       128 d~~g~TpLh~Aa~~g~---------~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d  198 (327)
T 1sw6_A          128 DEHGNTPLHWLTSIAN---------LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  198 (327)
T ss_dssp             STTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCC
Confidence            6789999999999999         999999999999999999999999999999754    11                


Q ss_pred             --Cccccccccc----CCcHHHHHHHHhcCC---------------------------------------------CCcc
Q psy8420          62 --DTFHTNDVCK----FPCAATTKLLIRCGA---------------------------------------------DVNA   90 (199)
Q Consensus        62 --~~~~l~~~~~----~~~~~~~~~Ll~~ga---------------------------------------------~v~~   90 (199)
                        |.+|++.|+.    .++.+++++|++.++                                             +++.
T Consensus       199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~  278 (327)
T 1sw6_A          199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  278 (327)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCC
Confidence              7899999998    899999999998743                                             5888


Q ss_pred             CCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420          91 KDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT  143 (199)
Q Consensus        91 ~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~  143 (199)
                      +|..|+||||+|+..++.        +++++|+++|++++.+|..|.||||++
T Consensus       279 ~d~~G~TpLh~A~~~g~~--------~~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          279 QDSNGDTCLNIAARLGNI--------SIVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             CCTTSCCHHHHHHHHCCH--------HHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             CCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            899999999999999999        999999999999999999999999984

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.90  E-value=1.2e-23  Score=160.52  Aligned_cols=143  Identities=20%  Similarity=0.165  Sum_probs=131.5

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------D   62 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------~   62 (199)
                      +..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..++ ++                  |
T Consensus        41 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  111 (237)
T 3b7b_A           41 SEDQRTPLMEAAENNH---------LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG  111 (237)
T ss_dssp             CTTCCCHHHHHHHTTC---------HHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTS
T ss_pred             CCCCCCHHHHHHHhCC---------HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCC
Confidence            5679999999999999         999999999999999999999999999999988 22                  5


Q ss_pred             cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      .+|++.|+..++.+++++|++.|++++.++..|.||||+|+..++.        +++++|+++|++++..|..|.||||+
T Consensus       112 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L~~  183 (237)
T 3b7b_A          112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV--------DIAEILLAAKCDLHAVNIHGDSPLHI  183 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH--------HHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            6889999999999999999999999999999999999999999999        99999999999999999999999998


Q ss_pred             ----ccchHHHHHHhhcccchhH
Q psy8420         143 ----TTTGVADLILRTLTKINLK  161 (199)
Q Consensus       143 ----~~~~~~~~ll~~~~~~~~~  161 (199)
                          ...++++.|++.+.+....
T Consensus       184 A~~~~~~~~v~~Ll~~gad~~~~  206 (237)
T 3b7b_A          184 AARENRYDCVVLFLSRDSDVTLK  206 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCC
T ss_pred             HHHhCCHhHHHHHHHcCCCCCcc
Confidence                5667889999987765543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=5.7e-25  Score=168.11  Aligned_cols=175  Identities=17%  Similarity=0.186  Sum_probs=140.3

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcC----CCcccccCCCchHHHHHHhcCC-CC--------------
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSL----NKLSVASRQNQSLLHLCVNYET-PV--------------   61 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g----~~i~~~~~~g~t~L~~a~~~~~-~~--------------   61 (199)
                      .|++|.||||+|+..|+         .++++.|++.+    ++++.++..|.||||+|+..++ ++              
T Consensus         4 ~d~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   74 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEE---------KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR   74 (236)
T ss_dssp             ---CCCCTTHHHHHTTC---------SSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC
T ss_pred             CCCCCCchhHHHHHcCC---------hhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            37899999999999999         67777777665    4799999999999999999988 22              


Q ss_pred             ---CcccccccccCCcHHHHHHHHhcCCC------CccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCC
Q psy8420          62 ---DTFHTNDVCKFPCAATTKLLIRCGAD------VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV  132 (199)
Q Consensus        62 ---~~~~l~~~~~~~~~~~~~~Ll~~ga~------v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  132 (199)
                         |.+|++.|+..++.+++++|++.|++      ++..+..|.||||+|+..++.        +++++|+++|++++.+
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~  146 (236)
T 1ikn_D           75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL--------GIVELLVSLGADVNAQ  146 (236)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH--------HHHHHHHHHTCCTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCC
Confidence               67899999999999999999999876      577888999999999999999        9999999999999999


Q ss_pred             CC-CCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhc
Q psy8420         133 NN-KGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALD  195 (199)
Q Consensus       133 ~~-~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  195 (199)
                      +. .|.||||+    ...++++.|++.+.+.......+.....+.+.   .-..++.+++..+|++..
T Consensus       147 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~---~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG---RPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT---SSCHHHHHHHHTTSCGGG
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHc---cCchHHHHHHHHcchhhh
Confidence            98 99999999    56778999999877755433222222222221   124567889999998765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=1.1e-23  Score=163.99  Aligned_cols=123  Identities=17%  Similarity=0.156  Sum_probs=60.4

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Ccc
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTF   64 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~   64 (199)
                      ..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..|+ ++                 |.+
T Consensus        37 ~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  107 (285)
T 1wdy_A           37 EGGWTPLHNAVQMSR---------EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT  107 (285)
T ss_dssp             TTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB
T ss_pred             CCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCC
Confidence            345555555555555         555555555555555555555555555555544 11                 334


Q ss_pred             cccccccCCcHHHHHHHHhcCCCCccC----------CCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc-CCCCCCCC
Q psy8420          65 HTNDVCKFPCAATTKLLIRCGADVNAK----------DYQGNTPLHIIATYERAISDFQTLHTIILDLTEN-GAHMDTVN  133 (199)
Q Consensus        65 ~l~~~~~~~~~~~~~~Ll~~ga~v~~~----------d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~-ga~~~~~~  133 (199)
                      |++.|+..++.+++++|++.|++++..          +..|.||||+|+..++.        +++++|++. |++++..+
T Consensus       108 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~~~~~~~~~~  179 (285)
T 1wdy_A          108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV--------EVLKILLDEMGADVNACD  179 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH--------HHHHHHHHTSCCCTTCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH--------HHHHHHHHhcCCCCCccC
Confidence            444444445555555555555444444          34444455554444444        444444443 44444444


Q ss_pred             CCCCCcccc
Q psy8420         134 NKGLTPIQA  142 (199)
Q Consensus       134 ~~g~tpl~~  142 (199)
                      ..|.||||.
T Consensus       180 ~~g~t~l~~  188 (285)
T 1wdy_A          180 NMGRNALIH  188 (285)
T ss_dssp             TTSCCHHHH
T ss_pred             CCCCCHHHH
Confidence            444444443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.90  E-value=1e-23  Score=168.95  Aligned_cols=175  Identities=15%  Similarity=0.127  Sum_probs=135.0

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..|+ ++                 |.
T Consensus        55 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~  125 (351)
T 3utm_A           55 DGRKSTPLHLAAGYNR---------VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF  125 (351)
T ss_dssp             STTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            5679999999999999         999999999999999999999999999999988 33                 56


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCC---------------------------------------------------
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKD---------------------------------------------------   92 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d---------------------------------------------------   92 (199)
                      +|++.|+..++.+++++|+++|++++..+                                                   
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  205 (351)
T 3utm_A          126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF  205 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc
Confidence            89999999999999999999999988655                                                   


Q ss_pred             ---CCCCcHHHHHHhc---cCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhHH
Q psy8420          93 ---YQGNTPLHIIATY---ERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKC  162 (199)
Q Consensus        93 ---~~g~tpl~~a~~~---~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~  162 (199)
                         ..|.||||+|+..   +..        +++++|++.|++++.+|..|.||||+    ...++++.|++.+.+.....
T Consensus       206 ~~~~~~~t~L~~A~~~~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d  277 (351)
T 3utm_A          206 KQPQSHETALHCAVASLHPKRK--------QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD  277 (351)
T ss_dssp             CCTTTCCCHHHHHHHCCSTTHH--------HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cCCCCCCCHHHHHHHHhCccHH--------HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence               4456788888877   335        88999999999999999999999998    55678888888866544321


Q ss_pred             HHHHHHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420         163 LAAKVITQNNITYKGLVPHDLESFIELHGTALDK  196 (199)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  196 (199)
                      ..+.....+.+..   -..++.++|..+|++++.
T Consensus       278 ~~g~t~L~~A~~~---~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          278 SLGQTALHRAALA---GHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             TTSCCHHHHHHHH---TCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCC
Confidence            1111110111110   124466677777776654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.90  E-value=3.5e-23  Score=151.95  Aligned_cols=141  Identities=18%  Similarity=0.196  Sum_probs=110.9

Q ss_pred             CCchHHHHHHhcCC-CC------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhcc
Q psy8420          46 QNQSLLHLCVNYET-PV------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYE  106 (199)
Q Consensus        46 ~g~t~L~~a~~~~~-~~------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~  106 (199)
                      .+.++|+.|+..|+ ++                  |.+|++.|+..++.+++++|++.|++++..|..|.||||+|+..+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            46788999998887 22                  678999999999999999999999999999999999999999999


Q ss_pred             CcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchh
Q psy8420         107 RAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHD  182 (199)
Q Consensus       107 ~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (199)
                      +.        +++++|+++|++++..|..|.||||+    ...++++.|++.+.+.......+.........   .....
T Consensus        84 ~~--------~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~---~~~~~  152 (179)
T 3f6q_A           84 HR--------DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA---PLREL  152 (179)
T ss_dssp             CH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCH---HHHHH
T ss_pred             CH--------HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHH---HHHHH
Confidence            99        99999999999999999999999999    56678999999877654432211111111111   12345


Q ss_pred             HHHHHHHhhhhhccc
Q psy8420         183 LESFIELHGTALDKT  197 (199)
Q Consensus       183 l~~~~~~~~~~~~~~  197 (199)
                      +.+++..+|++++..
T Consensus       153 ~~~~L~~~g~~~~~~  167 (179)
T 3f6q_A          153 LRERAEKMGQNLNRI  167 (179)
T ss_dssp             HHHHHHHTTCCCSCB
T ss_pred             HHHHHHHhhcCcccC
Confidence            788888889888753

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.90  E-value=7.1e-23  Score=156.63  Aligned_cols=127  Identities=22%  Similarity=0.262  Sum_probs=116.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +.+|.||||+|+..|+         .++++.|++.|++++.+|..|.||||+|+..               ++.+++++|
T Consensus        18 ~~~~~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~---------------g~~~~v~~L   73 (229)
T 2vge_A           18 RLNPLVLLLDAALTGE---------LEVVQQAVKEMNDPSQPNEEGITALHNAICG---------------ANYSIVDFL   73 (229)
T ss_dssp             TSCHHHHHHHHHHHTC---------HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             ccchhHHHHHHHHcCC---------HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence            4678999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCC-CCCCCccccc------cchHHHHHHhh
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN-NKGLTPIQAT------TTGVADLILRT  154 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~------~~~~~~~ll~~  154 (199)
                      ++.|++++.+|..|+||||+|+..++.        +++++|+++|++++..+ ..|.||||++      ..++++.|++.
T Consensus        74 l~~ga~~n~~d~~g~tpLh~A~~~g~~--------~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~  145 (229)
T 2vge_A           74 ITAGANVNSPDSHGWTPLHCAASCNDT--------VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV  145 (229)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc
Confidence            999999999999999999999999999        99999999999999996 6999999984      34578888887


Q ss_pred             cccchh
Q psy8420         155 LTKINL  160 (199)
Q Consensus       155 ~~~~~~  160 (199)
                      +.+...
T Consensus       146 ga~~~~  151 (229)
T 2vge_A          146 EQSMGL  151 (229)
T ss_dssp             HHHTTT
T ss_pred             CCCccc
Confidence            665444

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=9e-24  Score=172.32  Aligned_cols=172  Identities=19%  Similarity=0.198  Sum_probs=139.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..|+ ++                   
T Consensus       163 d~~g~TpL~~A~~~g~---------~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~  233 (373)
T 2fo1_E          163 DCDENTPLMLAVLARR---------RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  233 (373)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             CCCCCCHHHHHHHcCh---------HHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence            6789999999999999         999999999999999999999999999999987 22                   


Q ss_pred             -CcccccccccCC---cHHHHHHHHhcCCCCcc--------CCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC-CC
Q psy8420          62 -DTFHTNDVCKFP---CAATTKLLIRCGADVNA--------KDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG-AH  128 (199)
Q Consensus        62 -~~~~l~~~~~~~---~~~~~~~Ll~~ga~v~~--------~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g-a~  128 (199)
                       |.+|++.|+..+   +.+++++|++.|++++.        .|..|.||||+|+..++.        +++++|++.+ ++
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~--------~~v~~Ll~~~~~~  305 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM--------PIVKYLVGEKGSN  305 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH--------HHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCH--------HHHHHHHHhcCCC
Confidence             678899999887   89999999999999986        677999999999999999        9999999875 99


Q ss_pred             CCCCCCCCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhh
Q psy8420         129 MDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTA  193 (199)
Q Consensus       129 ~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  193 (199)
                      ++.+|..|.||||+    ...++++.|++.+++.......+.....+.+..   -..++.++|..++.+
T Consensus       306 ~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~---g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN---NHHNIVDIFDRCRPE  371 (373)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT---TCHHHHHHHHTTC--
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHc---CCHHHHHHHHhcCcc
Confidence            99999999999999    567889999998776544322111111111111   135567777777654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.8e-23  Score=158.51  Aligned_cols=111  Identities=15%  Similarity=0.092  Sum_probs=106.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..               ++.+++++|
T Consensus        70 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~L  125 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGN---------LSWLRECLDNRVGVNGLDKAGSTALYWACHG---------------GHKDIVEML  125 (222)
T ss_dssp             EEEESCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             ccccccccccccccCc---------HHHHHHHHhCCCCccccCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence            4578999999999999         9999999999999999999999999999999               999999999


Q ss_pred             Hhc-CCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccccc
Q psy8420          82 IRC-GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATT  144 (199)
Q Consensus        82 l~~-ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~  144 (199)
                      ++. |++++.+|..|+||||+|+..++.        +++++|+++|++++.+|..|.|||+++.
T Consensus       126 l~~~g~~~~~~d~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  181 (222)
T 3ehr_A          126 FTQPNIELNQQNKLGDTALHAAAWKGYA--------DIVQLLLAKGARTDLRNIEKKLAFDMAT  181 (222)
T ss_dssp             TTSTTCCCCCCCTTSCCHHHHHHHHTCH--------HHHHHHHHHTCCSCCCCTTSCCHHHHCC
T ss_pred             HcCCCCCccccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCccccCCCCCHHHHhc
Confidence            998 999999999999999999999999        9999999999999999999999999943

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=3.9e-24  Score=158.83  Aligned_cols=135  Identities=12%  Similarity=0.019  Sum_probs=103.2

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      ..|+||||+|+..++.     +...++++.|++.|+++|.++..|.||||+|+..++         .......+++++|+
T Consensus        36 ~~g~T~Lh~A~~~~~~-----~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~---------~~~~~~~~iv~~Ll  101 (186)
T 3t8k_A           36 VLKSNILYDVLRNNND-----EARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG---------NDITGTTELCKIFL  101 (186)
T ss_dssp             HHTTTHHHHHTTCSCH-----HHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT---------TCHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCc-----chHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---------cchhhHHHHHHHHH
Confidence            5699999999988750     112468999999999999999999999999998821         00001268899999


Q ss_pred             hcCCCCccCCCCCC-cHHHHHHhccCcccchhhHHHHHHHHHH-cCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          83 RCGADVNAKDYQGN-TPLHIIATYERAISDFQTLHTIILDLTE-NGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        83 ~~ga~v~~~d~~g~-tpl~~a~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      ++|+++|.+|..|. ||||+|+..+..   .....+++++|++ +|++++.+|..|.||||+    ...+.++.|.+.
T Consensus       102 ~~Gadin~~d~~g~ttpLh~A~~~~~~---~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          102 EKGADITALYKPYKIVVFKNIFNYFVD---ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HTTCCSSSCBGGGTBCTTGGGGGCCSC---HHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             HCCCCCCccCCCcCchHHHHHHHcCCC---hhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999 999999884432   1112268899999 999999999999999998    333445555543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.89  E-value=6.7e-24  Score=164.25  Aligned_cols=177  Identities=19%  Similarity=0.141  Sum_probs=135.8

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHH----HHHHHHHcCCCccccc----CCCchHHHHHH---hcCC-CC-------
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEY----RIYKLVFSLNKLSVAS----RQNQSLLHLCV---NYET-PV-------   61 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~----~~~~ll~~g~~i~~~~----~~g~t~L~~a~---~~~~-~~-------   61 (199)
                      |++.|.|+||.|+..|.         .+    +++.++..|++++.++    ..|.||||+|+   ..|+ ++       
T Consensus         1 ~~~~~~~~L~~A~~~g~---------~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~   71 (260)
T 3jxi_A            1 MKVFNRPILFDIVSRGS---------PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI   71 (260)
T ss_dssp             CCCCCHHHHHHHHHHTC---------GGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred             CccchHHHHHHHHHhCC---------HHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence            57899999999999999         56    4555555999999776    66999999999   4455 22       


Q ss_pred             ---------------------CcccccccccCCcHHHHHHHHhcCCCCccCC--------------CCCCcHHHHHHhcc
Q psy8420          62 ---------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKD--------------YQGNTPLHIIATYE  106 (199)
Q Consensus        62 ---------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d--------------~~g~tpl~~a~~~~  106 (199)
                                           |.+|++.|+..++.+++++|+++|++++..+              ..|.||||+|+..+
T Consensus        72 g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g  151 (260)
T 3jxi_A           72 AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN  151 (260)
T ss_dssp             HHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT
T ss_pred             cccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC
Confidence                                 5689999999999999999999999999998              68999999999999


Q ss_pred             CcccchhhHHHHHHHHHH---cCCCCCCCCCCCCCcccccc-------------chHHHHHHhhcccchh-------HHH
Q psy8420         107 RAISDFQTLHTIILDLTE---NGAHMDTVNNKGLTPIQATT-------------TGVADLILRTLTKINL-------KCL  163 (199)
Q Consensus       107 ~~~~~~~~~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~~-------------~~~~~~ll~~~~~~~~-------~~~  163 (199)
                      +.        +++++|++   .|++++.+|..|.||||++.             .++++.|++.+.+...       ...
T Consensus       152 ~~--------~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~  223 (260)
T 3jxi_A          152 QP--------HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN  223 (260)
T ss_dssp             CH--------HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT
T ss_pred             CH--------HHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccC
Confidence            99        99999999   99999999999999999933             3677778877555311       100


Q ss_pred             HHHHHhhccccCCCCCchhHHHHHHHhhhhhccc
Q psy8420         164 AAKVITQNNITYKGLVPHDLESFIELHGTALDKT  197 (199)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  197 (199)
                      .+.....+... .  -..++.++|..+|..+..+
T Consensus       224 ~g~tpL~~A~~-~--g~~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          224 DGLSPLMMAAK-T--GKIGIFQHIIRREIADAAA  254 (260)
T ss_dssp             TSCCHHHHHHH-T--TCHHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHH-c--CCHHHHHHHHHhCCCcccc
Confidence            01000000111 1  1345778888888876543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.89  E-value=3.1e-23  Score=151.15  Aligned_cols=158  Identities=13%  Similarity=0.096  Sum_probs=129.5

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCC-cccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNK-LSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~-i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      +.||||.|+..|.         .+.++.++..+.+ ++.++..|.||||+|+..               ++.+++++|++
T Consensus         2 ~~~~L~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll~   57 (172)
T 3v30_A            2 DSLSIHQLAAQGE---------LDQLKEHLRKGDNLVNKPDERGFTPLIWASAF---------------GEIETVRFLLE   57 (172)
T ss_dssp             --CCHHHHHHTTC---------HHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT---------------TCHHHHHHHHH
T ss_pred             chhhHHHHHHcCC---------HHHHHHHHHcCcccccCCCCCCCCHHHHHHHc---------------CCHHHHHHHHH
Confidence            5789999999999         9999999999877 889999999999999999               99999999999


Q ss_pred             cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420          84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKIN  159 (199)
Q Consensus        84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~  159 (199)
                      +|++++..+..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.+.+..
T Consensus        58 ~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  129 (172)
T 3v30_A           58 WGADPHILAKERESALSLASTGGYT--------DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT  129 (172)
T ss_dssp             HTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cCCCchhhcccCCCHHHHHHHCCCH--------HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            9999999999999999999999999        99999999999999999999999999    56678999998876654


Q ss_pred             hHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhccc
Q psy8420         160 LKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKT  197 (199)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  197 (199)
                      .....+.......+..   -..++.+++..+|.++...
T Consensus       130 ~~~~~g~t~l~~A~~~---~~~~~~~~L~~~~~~~~~~  164 (172)
T 3v30_A          130 TEADSGYTPMDLAVAL---GYRKVQQVIENHILKLFQS  164 (172)
T ss_dssp             CCCTTSCCHHHHHHHH---TCHHHHHHHHHHHHHHSCC
T ss_pred             ccCCCCCCHHHHHHHh---CcHHHHHHHHHHHHHHhcc
Confidence            3221111111111111   1356778888888876653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.89  E-value=4.9e-23  Score=147.64  Aligned_cols=117  Identities=21%  Similarity=0.256  Sum_probs=84.5

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      +.||||.|+..|+         .+.++.|++. +.+++.++..|.||||+ +..               ++.+++++|++
T Consensus         2 ~~~~L~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~---------------~~~~~v~~Ll~   56 (156)
T 1bd8_A            2 AGDRLSGAAARGD---------VQEVRRLLHRELVHPDALNRFGKTALQV-MMF---------------GSTAIALELLK   56 (156)
T ss_dssp             HHHHHHHHHHHTC---------HHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT---------------TCHHHHHHHHH
T ss_pred             cchHHHHHHHhCC---------HHHHHHHHHhhCcCccccCCCCCcHHHH-HHc---------------CCHHHHHHHHH
Confidence            5688888888888         8888888887 44888888888888888 777               66666666666


Q ss_pred             cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      .|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.
T Consensus        57 ~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           57 QGASPNVQDTSGTSPVHDAARTGFL--------DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCcH--------HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            6666666666666666666666666        66666666666666666666666666    444556666654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.89  E-value=1.5e-23  Score=162.25  Aligned_cols=132  Identities=19%  Similarity=0.154  Sum_probs=115.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc--------------CCCchHHHHHHhcCCCCCccccc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS--------------RQNQSLLHLCVNYETPVDTFHTN   67 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~--------------~~g~t~L~~a~~~~~~~~~~~l~   67 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++              ..|.||||+|+..          
T Consensus        90 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~----------  150 (260)
T 3jxi_A           90 YYRGQTALHIAIERRC---------KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT----------  150 (260)
T ss_dssp             SEESBCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT----------
T ss_pred             ccCCCCHHHHHHHcCC---------HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHc----------
Confidence            3489999999999999         999999999999999998              6899999999999          


Q ss_pred             ccccCCcHHHHHHHHh---cCCCCccCCCCCCcHHHHHHhccCcc-cchhhHHHHHHHHHHcCCCC-------CCCCCCC
Q psy8420          68 DVCKFPCAATTKLLIR---CGADVNAKDYQGNTPLHIIATYERAI-SDFQTLHTIILDLTENGAHM-------DTVNNKG  136 (199)
Q Consensus        68 ~~~~~~~~~~~~~Ll~---~ga~v~~~d~~g~tpl~~a~~~~~~~-~~~~~~~~~~~~Ll~~ga~~-------~~~~~~g  136 (199)
                           ++.+++++|++   .|++++.+|..|+||||+|+..++.. .+...+.+++++|+++|+++       +..|..|
T Consensus       151 -----g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g  225 (260)
T 3jxi_A          151 -----NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG  225 (260)
T ss_dssp             -----TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred             -----CCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCC
Confidence                 99999999999   99999999999999999999877621 11111128999999999998       7799999


Q ss_pred             CCcccc----ccchHHHHHHhhccc
Q psy8420         137 LTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus       137 ~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                      .||||+    ...++++.|++++..
T Consensus       226 ~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          226 LSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999    567788999988544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.89  E-value=7.1e-23  Score=148.24  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=109.6

Q ss_pred             ccCCCchHHHHHHhcCC-CC------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHH
Q psy8420          43 ASRQNQSLLHLCVNYET-PV------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA  103 (199)
Q Consensus        43 ~~~~g~t~L~~a~~~~~-~~------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~  103 (199)
                      .+..+.++|+.|+..|+ ++                  +.+|++.|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            45678899999999988 22                  568999999999999999999999999999999999999999


Q ss_pred             hccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCC
Q psy8420         104 TYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLV  179 (199)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (199)
                      ..++.        +++++|+++|++++..|..|.||||+    ...++++.|++.+.+.......+........  .  -
T Consensus        84 ~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~--~--~  151 (165)
T 3twr_A           84 SYGHY--------EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK--D--G  151 (165)
T ss_dssp             HTTCH--------HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC--T--T
T ss_pred             HcCcH--------HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh--c--C
Confidence            99999        99999999999999999999999999    5667899999987765543322222212211  1  2


Q ss_pred             chhHHHHHHHhhh
Q psy8420         180 PHDLESFIELHGT  192 (199)
Q Consensus       180 ~~~l~~~~~~~~~  192 (199)
                      ..++.+++..+|+
T Consensus       152 ~~~i~~~L~~~gA  164 (165)
T 3twr_A          152 DTDIQDLLRGDAA  164 (165)
T ss_dssp             CHHHHHHHHTC--
T ss_pred             ChHHHHHHhhccc
Confidence            3467788877664

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.89  E-value=2e-23  Score=161.35  Aligned_cols=130  Identities=18%  Similarity=0.155  Sum_probs=113.7

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCC-------------CchHHHHHHhcCCCCCccccccc
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQ-------------NQSLLHLCVNYETPVDTFHTNDV   69 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~-------------g~t~L~~a~~~~~~~~~~~l~~~   69 (199)
                      ..|.||||+|+..++         .++++.|++.|++++.++..             |.||||+|+..            
T Consensus        88 ~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~------------  146 (256)
T 2etb_A           88 YQGHSALHIAIEKRS---------LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT------------  146 (256)
T ss_dssp             TTTCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT------------
T ss_pred             ccCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHc------------
Confidence            569999999999999         99999999999999999876             99999999999            


Q ss_pred             ccCCcHHHHHHHHh---cCCCCccCCCCCCcHHHHHHh--ccCcccchhhHHHHHHHHHHcCCCC-------CCCCCCCC
Q psy8420          70 CKFPCAATTKLLIR---CGADVNAKDYQGNTPLHIIAT--YERAISDFQTLHTIILDLTENGAHM-------DTVNNKGL  137 (199)
Q Consensus        70 ~~~~~~~~~~~Ll~---~ga~v~~~d~~g~tpl~~a~~--~~~~~~~~~~~~~~~~~Ll~~ga~~-------~~~~~~g~  137 (199)
                         ++.+++++|++   .|++++.+|..|+||||+|+.  .++. .......+++++|+++|+++       +.+|..|.
T Consensus       147 ---~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~-~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~  222 (256)
T 2etb_A          147 ---KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSP-ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL  222 (256)
T ss_dssp             ---TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSC
T ss_pred             ---CCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCc-hhhHHHHHHHHHHHHcCCCcccccccccccCCCCC
Confidence               99999999999   999999999999999999998  6666 00000011999999999999       99999999


Q ss_pred             Ccccc----ccchHHHHHHhhccc
Q psy8420         138 TPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus       138 tpl~~----~~~~~~~~ll~~~~~  157 (199)
                      ||||+    ...++++.|++++..
T Consensus       223 tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          223 TPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCC
Confidence            99999    566788888888544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.89  E-value=6.3e-24  Score=167.31  Aligned_cols=166  Identities=13%  Similarity=0.081  Sum_probs=90.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++  |.||||+|+..|+ ++                 |.
T Consensus        28 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~   96 (285)
T 3kea_A           28 DVHGHSASYYAIADNN---------VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGN   96 (285)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            3455566666665555         555555555555554442  4555555555544 11                 34


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCC---------------------------------CcHHHHHHhccCccc
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQG---------------------------------NTPLHIIATYERAIS  110 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g---------------------------------~tpl~~a~~~~~~~~  110 (199)
                      +|++.|+..++.+++++|+++|++++..+..|                                 .||||+|+..++.  
T Consensus        97 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~--  174 (285)
T 3kea_A           97 TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHV--  174 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCH--
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChH--
Confidence            44555555555555555555555555544444                                 4555555555555  


Q ss_pred             chhhHHHHHHHHHHcCCCCCCCCCCCCCc-ccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHH
Q psy8420         111 DFQTLHTIILDLTENGAHMDTVNNKGLTP-IQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLES  185 (199)
Q Consensus       111 ~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp-l~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  185 (199)
                            +++++|+++|++++.+|..|.|| ||+    ...++++.|++.+++......       .+.. .  -..++.+
T Consensus       175 ------~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~-~--~~~~iv~  238 (285)
T 3kea_A          175 ------DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVL-L--DDAEIAK  238 (285)
T ss_dssp             ------HHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGT-T--TCHHHHH
T ss_pred             ------HHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhh-c--CCHHHHH
Confidence                  66666666666666666666665 665    445566666666555544321       0111 1  1456778


Q ss_pred             HHHHhhhhhcc
Q psy8420         186 FIELHGTALDK  196 (199)
Q Consensus       186 ~~~~~~~~~~~  196 (199)
                      ++..+|++++.
T Consensus       239 ~Ll~~g~~~~~  249 (285)
T 3kea_A          239 MIIEKHVEYKS  249 (285)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHcCCCCCC
Confidence            88888887653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.89  E-value=7e-23  Score=157.30  Aligned_cols=126  Identities=20%  Similarity=0.261  Sum_probs=100.1

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      ..|.||||.|+..|+         .++++.|++.|++++.+|..|.||||+|+..               ++.+++++|+
T Consensus        35 ~~~~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~---------------g~~~~v~~Ll   90 (239)
T 1ycs_B           35 PLPLALLLDSSLEGE---------FDLVQRIIYEVDDPSLPNDEGITALHNAVCA---------------GHTEIVKFLV   90 (239)
T ss_dssp             --CHHHHHHHHHHTC---------HHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH---------------TCHHHHHHHH
T ss_pred             chhhHHHHHHHHcCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---------------CCHHHHHHHH
Confidence            345677777777777         7777777777777777777777777777777               8899999999


Q ss_pred             hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCC-Cccccc------cchHHHHHHhhc
Q psy8420          83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL-TPIQAT------TTGVADLILRTL  155 (199)
Q Consensus        83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~------~~~~~~~ll~~~  155 (199)
                      ++|++++.+|..|+||||+|+..++.        +++++|+++|++++..+..|. ||+|++      ..++++.|++.+
T Consensus        91 ~~ga~~~~~d~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~  162 (239)
T 1ycs_B           91 QFGVNVNAADSDGWTPLHCAASCNNV--------QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  162 (239)
T ss_dssp             HHTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HcCCCCCccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence            99999999999999999999998888        999999999999998887777 998873      356788888875


Q ss_pred             ccchh
Q psy8420         156 TKINL  160 (199)
Q Consensus       156 ~~~~~  160 (199)
                      .+...
T Consensus       163 a~~~~  167 (239)
T 1ycs_B          163 EKMGI  167 (239)
T ss_dssp             HHTTT
T ss_pred             hcccc
Confidence            55433

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.4e-22  Score=133.48  Aligned_cols=93  Identities=31%  Similarity=0.331  Sum_probs=88.9

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      +|.||||+|+..++         .++++.|++.|++++.+|..|.||||+|+..               ++.+++++|++
T Consensus         1 ~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~---------------~~~~~v~~Ll~   56 (93)
T 1n0q_A            1 NGRTPLHLAARNGH---------LEVVKLLLEAGADVNAKDKNGRTPLHLAARN---------------GHLEVVKLLLE   56 (93)
T ss_dssp             --CCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHHHH
T ss_pred             CCCcHHHHHHHcCC---------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHc---------------CCHHHHHHHHH
Confidence            58999999999999         9999999999999999999999999999999               99999999999


Q ss_pred             cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420          84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH  128 (199)
Q Consensus        84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~  128 (199)
                      +|++++.+|..|.||||+|+..++.        +++++|+++|++
T Consensus        57 ~ga~~~~~d~~g~t~l~~A~~~~~~--------~~~~~Ll~~ga~   93 (93)
T 1n0q_A           57 AGADVNAKDKNGRTPLHLAARNGHL--------EVVKLLLEAGAY   93 (93)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCC
T ss_pred             cCCCCCccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCC
Confidence            9999999999999999999999999        999999999985

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=2.6e-23  Score=172.19  Aligned_cols=139  Identities=23%  Similarity=0.283  Sum_probs=116.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      +..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..|+ ++                 +.
T Consensus        11 ~~~g~t~L~~Aa~~g~---------~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~   81 (437)
T 1n11_A           11 GESGLTPLHVASFMGH---------LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ   81 (437)
T ss_dssp             ----CCHHHHHHHHTC---------HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC
T ss_pred             CCCCCCHHHHHHHCCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            5689999999999999         999999999999999999999999999999988 33                 56


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-  142 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-  142 (199)
                      +|++.|+..++.+++++|+++|++++..+..|.||||+|+..++.        +++++|++.+++.+..+..|.||||+ 
T Consensus        82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~~~~~~~~~~~g~t~L~~A  153 (437)
T 1n11_A           82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV--------ETVLALLEKEASQACMTKKGFTPLHVA  153 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH--------HHHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence            788888888888888888888888888888888888888888888        88888888888888888888888887 


Q ss_pred             ---ccchHHHHHHhhccc
Q psy8420         143 ---TTTGVADLILRTLTK  157 (199)
Q Consensus       143 ---~~~~~~~~ll~~~~~  157 (199)
                         ...++++.|++.+.+
T Consensus       154 ~~~g~~~~v~~Ll~~g~~  171 (437)
T 1n11_A          154 AKYGKVRVAELLLERDAH  171 (437)
T ss_dssp             HHTTCHHHHHHHHHTTCC
T ss_pred             HHcCCHHHHHHHHhCCCC
Confidence               455677777776443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=4e-23  Score=171.09  Aligned_cols=123  Identities=23%  Similarity=0.227  Sum_probs=62.2

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Ccc
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTF   64 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~   64 (199)
                      +.|.||||+|+..|+         .++++.|++.|++++..+..|.||||+|+..++ ++                 +.+
T Consensus       144 ~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  214 (437)
T 1n11_A          144 KKGFTPLHVAAKYGK---------VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT  214 (437)
T ss_dssp             TTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCC
T ss_pred             CCCCCHHHHHHHcCC---------HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence            455566666666665         555555555555555555555555555555554 11                 234


Q ss_pred             cccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          65 HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        65 ~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      |++.|+..++.+++++|++.|++++..+..|.||||+|+..++.        +++++|++.|++++..+..|.||||+
T Consensus       215 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~~~~~~~~~~~g~t~L~~  284 (437)
T 1n11_A          215 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA--------EMVALLLSKQANGNLGNKSGLTPLHL  284 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCH--------HHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            44444444444444444444444444444444444444444444        44444444444444444444444444

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.89  E-value=1.9e-22  Score=161.82  Aligned_cols=159  Identities=18%  Similarity=0.174  Sum_probs=130.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHH-cCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVF-SLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~-~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      ++.|.||||+|+..|+         .++++.|+. .|++++.++..|.|++++++..+           ...+...++++
T Consensus       165 ~~~g~T~L~~A~~~g~---------~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~-----------~~~~~~~i~~l  224 (337)
T 4g8k_A          165 RKGGATALMDAAEKGH---------VEVLKILLDEMGADVNACDNMGRNALIHALLSS-----------DDSDVEAITHL  224 (337)
T ss_dssp             TTCSCCHHHHHHHHTC---------HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS-----------CTTTHHHHHHH
T ss_pred             cCCCCcHHHHHHHCCC---------HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc-----------CcccHHHHHHH
Confidence            4678999999999999         999999996 59999999999999999987761           11234568899


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc-CCCCCCCCCCCCCcccc----ccchHHHHHHhhc
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN-GAHMDTVNNKGLTPIQA----TTTGVADLILRTL  155 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~-ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~  155 (199)
                      |+++|+++|.+|..|.||||+|+..+..        ++++.|+.. |++++.+|..|.||||+    ...++++.|++.+
T Consensus       225 Ll~~gad~n~~d~~g~t~L~~a~~~~~~--------~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          225 LLDHGADVNVRGERGKTPLILAVEKKHL--------GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             HHHTTCCTTCCCGGGCCHHHHHHHTTCH--------HHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhhhh--------HHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999999999999999999        999999975 89999999999999999    5678899999998


Q ss_pred             ccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420         156 TKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDK  196 (199)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  196 (199)
                      ++.........++.      .  -..++.++|..+|+++|-
T Consensus       297 Ad~n~~~~L~~A~~------~--~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          297 ASTDCGDLVMTARR------N--YDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             CSSTTCCHHHHHHH------T--TCHHHHHHHHHTTCCC--
T ss_pred             CCCCCCCHHHHHHH------c--CCHHHHHHHHHCcCCCCC
Confidence            87654322111111      1  135688999999999884

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.89  E-value=8.9e-23  Score=160.73  Aligned_cols=135  Identities=18%  Similarity=0.158  Sum_probs=113.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..|+ ++                 |.
T Consensus        70 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~  140 (299)
T 1s70_B           70 NVDGLTALHQACIDDN---------VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD  140 (299)
T ss_dssp             CTTCCBHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC
Confidence            5789999999999999         999999999999999999999999999999998 33                 67


Q ss_pred             ccccccccCCcHHHHHHHHhc-CCCCc-----------------------------c-----------------------
Q psy8420          64 FHTNDVCKFPCAATTKLLIRC-GADVN-----------------------------A-----------------------   90 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~-ga~v~-----------------------------~-----------------------   90 (199)
                      +|++.|+..++.++++.++.. |.+++                             .                       
T Consensus       141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  220 (299)
T 1s70_B          141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ  220 (299)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            889999988888888876642 32210                             0                       


Q ss_pred             ----CC---CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHHHHHHh
Q psy8420          91 ----KD---YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILR  153 (199)
Q Consensus        91 ----~d---~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~~~ll~  153 (199)
                          .+   ..|.||||+|+..++.        +++++|+++|++++.+|..|.||++++..+..+.+.+
T Consensus       221 ~g~d~~~~d~~g~tpL~~A~~~~~~--------~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~  282 (299)
T 1s70_B          221 ARYDVNIKDYDGWTPLHAAAHWGKE--------EACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEE  282 (299)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHH
T ss_pred             cCCCCCCcCCCCCcHHHHHHhcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence                01   2689999999999999        9999999999999999999999999976665544443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.89  E-value=6.9e-23  Score=161.35  Aligned_cols=123  Identities=13%  Similarity=0.133  Sum_probs=109.1

Q ss_pred             HHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC---------------CcccccccccCCcHHHHHHHHhcCCCCcc
Q psy8420          27 EYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV---------------DTFHTNDVCKFPCAATTKLLIRCGADVNA   90 (199)
Q Consensus        27 ~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~---------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~   90 (199)
                      ...+..++..+ +++.+|..|.||||+|+..|+ ++               |.+|++.|+..++.+++++|+++|++++.
T Consensus        12 ~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   90 (285)
T 3kea_A           12 SKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQ   90 (285)
T ss_dssp             HHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            45555566554 689999999999999999998 33               67899999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCC-CCcccc----ccchHHHHHHhhcccc
Q psy8420          91 KDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG-LTPIQA----TTTGVADLILRTLTKI  158 (199)
Q Consensus        91 ~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g-~tpl~~----~~~~~~~~ll~~~~~~  158 (199)
                      +|..|.||||+|+..++.        +++++|+++|++++..+..| .||||+    ...++++.|++.+...
T Consensus        91 ~d~~g~t~L~~A~~~g~~--------~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           91 FDDKGNTALYYAVDSGNM--------QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCH--------HHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             cCCCCCcHHHHHHHcCCH--------HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            999999999999999999        99999999999999999999 899998    5667889999885543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.89  E-value=4.9e-23  Score=160.68  Aligned_cols=134  Identities=23%  Similarity=0.227  Sum_probs=115.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC--------------CCchHHHHHHhcCCCCCccccc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR--------------QNQSLLHLCVNYETPVDTFHTN   67 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~--------------~g~t~L~~a~~~~~~~~~~~l~   67 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++.              .|.||||+|+..          
T Consensus        98 d~~g~tpL~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~----------  158 (273)
T 2pnn_A           98 YYKGQTALHIAIERRN---------MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT----------  158 (273)
T ss_dssp             TTTTCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT----------
T ss_pred             cCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHc----------
Confidence            3589999999999999         9999999999999999987              799999999999          


Q ss_pred             ccccCCcHHHHHHHHh---cCCCCccCCCCCCcHHHHHHhccCcc-cchhhHHHHHHHHHHcCCCCC-------CCCCCC
Q psy8420          68 DVCKFPCAATTKLLIR---CGADVNAKDYQGNTPLHIIATYERAI-SDFQTLHTIILDLTENGAHMD-------TVNNKG  136 (199)
Q Consensus        68 ~~~~~~~~~~~~~Ll~---~ga~v~~~d~~g~tpl~~a~~~~~~~-~~~~~~~~~~~~Ll~~ga~~~-------~~~~~g  136 (199)
                           ++.+++++|++   .|++++.+|..|+||||+|+..++.. .+...+.+++++|+++|++++       .+|..|
T Consensus       159 -----g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g  233 (273)
T 2pnn_A          159 -----NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG  233 (273)
T ss_dssp             -----TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred             -----CCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCC
Confidence                 99999999999   99999999999999999999987621 011111289999999999986       589999


Q ss_pred             CCcccc----ccchHHHHHHhhcccch
Q psy8420         137 LTPIQA----TTTGVADLILRTLTKIN  159 (199)
Q Consensus       137 ~tpl~~----~~~~~~~~ll~~~~~~~  159 (199)
                      .||||+    ...++++.|++.++..+
T Consensus       234 ~TpL~~A~~~g~~~iv~~Ll~~ga~dp  260 (273)
T 2pnn_A          234 LTPLALAASSGKIGVLAYILQREIHEP  260 (273)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence            999999    56778999999877433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=7.3e-23  Score=151.04  Aligned_cols=108  Identities=22%  Similarity=0.354  Sum_probs=104.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.||||+|+..|+         .++++.|++ |++++.+|..|.||||+|+..               ++.+++++|
T Consensus        41 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~---------------~~~~~v~~L   95 (183)
T 3deo_A           41 VSEYETPWWTAARKAD---------EQALSQLLE-DRDVDAVDENGRTALLFVAGL---------------GSDKCVRLL   95 (183)
T ss_dssp             HHHHHHHHHHHHHTTC---------HHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence            4579999999999999         999999999 999999999999999999999               999999999


Q ss_pred             HhcCCCCccCC-CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          82 IRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        82 l~~ga~v~~~d-~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      +++|++++.++ ..|+||||+|+..++.        +++++|+++|++++.+|..|.||||+
T Consensus        96 l~~ga~~~~~~~~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~d~~g~tpl~~  149 (183)
T 3deo_A           96 AEAGADLDHRDMRGGLTALHMAAGYVRP--------EVVEALVELGADIEVEDERGLTALEL  149 (183)
T ss_dssp             HHTTCCTTCCCSSSSCCHHHHHHHTTCH--------HHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HHcCCCCCcCCCCCCCCHHHHHHhcCcH--------HHHHHHHHcCCCCcCCCCCCCCHHHH
Confidence            99999999998 8999999999999999        99999999999999999999999998

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.88  E-value=6.5e-23  Score=155.99  Aligned_cols=141  Identities=18%  Similarity=0.232  Sum_probs=126.3

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------   61 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------   61 (199)
                      +|..|.|+||.|+..|.         .++++.|++.|++++.++..|.||||+|+..++ ++                  
T Consensus         5 ~d~~~~~~l~~A~~~g~---------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   75 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGI---------YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL   75 (240)
T ss_dssp             CSCGGGCCHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred             cccccchHHHHHHHcCC---------hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence            47889999999999999         999999999999999999999999999999988 32                  


Q ss_pred             CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccc
Q psy8420          62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ  141 (199)
Q Consensus        62 ~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  141 (199)
                      +.+|++.|+..++.+++++|++.|++++..+..|.||||+|+..++.        +++++|+++|++++..+..|.|||+
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~Ll~~~~~~~~~~~~g~t~l~  147 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT--------SIVAYLIAKGQDVDMMDQNGMTPLM  147 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHH--------HHHHHHHhcCCCccccCCCCCcHHH
Confidence            56788899999999999999999999999999999999999999999        9999999999999999999999999


Q ss_pred             c-----ccchHHHHHHhhcccc
Q psy8420         142 A-----TTTGVADLILRTLTKI  158 (199)
Q Consensus       142 ~-----~~~~~~~~ll~~~~~~  158 (199)
                      +     .....++.|++.+.+.
T Consensus       148 ~a~~~~~~~~~~~~L~~~~~~~  169 (240)
T 3eu9_A          148 WAAYRTHSVDPTRLLLTFNVSV  169 (240)
T ss_dssp             HHHHHCCSSTTHHHHHHTTCCT
T ss_pred             HHHHhCChHHHHHHHHhcCCCc
Confidence            8     2256777787775443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.88  E-value=1e-22  Score=163.02  Aligned_cols=143  Identities=18%  Similarity=0.148  Sum_probs=126.5

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++..|.||||+|+..++ ++                   
T Consensus        88 ~~~g~t~L~~A~~~g~---------~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  158 (351)
T 3utm_A           88 DKGGLVPLHNACSYGH---------YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGK  158 (351)
T ss_dssp             CTTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCcHHHHHHHCCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCC
Confidence            5789999999999999         999999999999999999999999999999887 22                   


Q ss_pred             ----------------------------------------------------CcccccccccC---CcHHHHHHHHhcCC
Q psy8420          62 ----------------------------------------------------DTFHTNDVCKF---PCAATTKLLIRCGA   86 (199)
Q Consensus        62 ----------------------------------------------------~~~~l~~~~~~---~~~~~~~~Ll~~ga   86 (199)
                                                                          +.+|++.|+..   +..+++++|++.|+
T Consensus       159 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~  238 (351)
T 3utm_A          159 SAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA  238 (351)
T ss_dssp             CHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTC
T ss_pred             cchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCC
Confidence                                                                12566666666   56889999999999


Q ss_pred             CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhH
Q psy8420          87 DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLK  161 (199)
Q Consensus        87 ~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~  161 (199)
                      +++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.+++....
T Consensus       239 ~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~  309 (351)
T 3utm_A          239 NVNEKNKDFMTPLHVAAERAHN--------DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII  309 (351)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             CcCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc
Confidence            9999999999999999999999        99999999999999999999999998    5677899999987775553

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.88  E-value=7.5e-23  Score=159.25  Aligned_cols=139  Identities=17%  Similarity=0.117  Sum_probs=96.4

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccc-cCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVA-SRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~-~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      ..|.||||.|+..|.         .++++.|++.|++++.+ +..|.||||+|+..|+ ++                 |.
T Consensus         3 ~~g~~~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~   73 (285)
T 1wdy_A            3 VEDNHLLIKAVQNED---------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA   73 (285)
T ss_dssp             HHHHHHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cccchHHHHHHHcCC---------HHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            467788888888888         78888888888888776 6677888888888777 22                 56


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC------CCCCCCCCC
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH------MDTVNNKGL  137 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~------~~~~~~~g~  137 (199)
                      +|++.|+..++.+++++|+++|++++..+..|.||||+|+..++.    +.++.+++.-......      ....+..|.
T Consensus        74 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~  149 (285)
T 1wdy_A           74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV----KALKFLYKRGANVNLRRKTKEDQERLRKGGA  149 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCH----HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCH----HHHHHHHHhCCCcccccccHHHHHhhccCCC
Confidence            777888888888888888888888888888888888888877655    2222333221111111      112356778


Q ss_pred             Ccccc----ccchHHHHHHhh
Q psy8420         138 TPIQA----TTTGVADLILRT  154 (199)
Q Consensus       138 tpl~~----~~~~~~~~ll~~  154 (199)
                      ||||+    ...++++.|++.
T Consensus       150 t~L~~A~~~~~~~~v~~Ll~~  170 (285)
T 1wdy_A          150 TALMDAAEKGHVEVLKILLDE  170 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHh
Confidence            88887    456677777765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=4.9e-23  Score=140.61  Aligned_cols=108  Identities=25%  Similarity=0.254  Sum_probs=101.6

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |++|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..               ++.+++++|
T Consensus         6 d~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~---------------~~~~~~~~L   61 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGH---------AEEVKKLLSKGADVNARSKDGNTPLHLAAKN---------------GHAEIVKLL   61 (115)
T ss_dssp             SCSSCCHHHHHHHHTC---------HHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT---------------TCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---------------CcHHHHHHH
Confidence            7899999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccc
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ  141 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  141 (199)
                      +++|++++.+|..|.||||+|+..++.        +++++|+++|++++..+..|.+|-.
T Consensus        62 l~~g~~~~~~d~~g~tpl~~A~~~~~~--------~~~~~Ll~~ga~~n~~~~~~~~~~~  113 (115)
T 2l6b_A           62 LAKGADVNARSKDGNTPEHLAKKNGHH--------EIVKLLDAKGADVNARSWGSSHHHH  113 (115)
T ss_dssp             TTTTCCTTCCCTTCCCTTHHHHTTTCH--------HHHHHHHTTSSSHHHHSCCCC----
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHCCCH--------HHHHHHHHcCCCCCcCCcccccccc
Confidence            999999999999999999999999999        9999999999999999999999853

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.87  E-value=6.5e-22  Score=147.22  Aligned_cols=122  Identities=16%  Similarity=0.210  Sum_probs=80.4

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCC-CcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHH
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLN-KLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTK   79 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~-~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~   79 (199)
                      |+..+.||||.|+..|.         .+.++.++..+. +++.++..|.||||+|+..               ++.++++
T Consensus         1 ~~~~~~~~L~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~   56 (201)
T 3hra_A            1 MKTYEVGALLEAANQRD---------TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN---------------NDIEIAK   56 (201)
T ss_dssp             --CCCTTHHHHHHHTTC---------HHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH---------------TCHHHHH
T ss_pred             CCcccccHHHHHHHhcc---------HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc---------------CCHHHHH
Confidence            46789999999999999         999999999865 9999999999999999999               4555555


Q ss_pred             HHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHH-HcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLT-ENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        80 ~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll-~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      +|+++|++++..+..|.||||+|+..++.        +++++|+ ..+++++..+..|.||||+    ...++++.|++.
T Consensus        57 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  128 (201)
T 3hra_A           57 ALIDRGADINLQNSISDSPYLYAGAQGRT--------EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED  128 (201)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            55555555555555555555555555555        5555555 3344555555555555554    233444444444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.87  E-value=2.5e-22  Score=162.74  Aligned_cols=125  Identities=15%  Similarity=0.137  Sum_probs=117.7

Q ss_pred             ccchhhHHHHHHHHh--hccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHH
Q psy8420           2 EDNLVTSLYLLVILT--KVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTK   79 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~--~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~   79 (199)
                      |..|.||||+|+..|  +         .++++.|++.|++++.++..|.||||+|+..               ++.++++
T Consensus       135 ~~~g~t~L~~A~~~g~~~---------~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~---------------g~~~~v~  190 (364)
T 3ljn_A          135 HCKGQTALHWCVGLGPEY---------LEMIKILVQLGASPTAKDKADETPLMRAMEF---------------RNREALD  190 (364)
T ss_dssp             EESCCCHHHHHHHSCGGG---------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCch---------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHc---------------CCHHHHH
Confidence            357899999999999  8         8999999999999999999999999999999               9999999


Q ss_pred             HHHhcCCC-----CccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHH
Q psy8420          80 LLIRCGAD-----VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADL  150 (199)
Q Consensus        80 ~Ll~~ga~-----v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~  150 (199)
                      +|+++|++     ++..|..|+||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.
T Consensus       191 ~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~  262 (364)
T 3ljn_A          191 LMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE--------DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKE  262 (364)
T ss_dssp             HHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH--------HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHH
T ss_pred             HHHhcccccccccccccCCCCCcHHHHHHHcCCH--------HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHH
Confidence            99999999     999999999999999999999        99999999999999999999999999    56778999


Q ss_pred             HHhhcccc
Q psy8420         151 ILRTLTKI  158 (199)
Q Consensus       151 ll~~~~~~  158 (199)
                      |++.+...
T Consensus       263 Ll~~~~~~  270 (364)
T 3ljn_A          263 LLQKTDVF  270 (364)
T ss_dssp             HHHHSCHH
T ss_pred             HHHcCCch
Confidence            99986554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.87  E-value=1.3e-21  Score=140.03  Aligned_cols=105  Identities=20%  Similarity=0.255  Sum_probs=91.8

Q ss_pred             CchHHHHHHhcCC-CC----------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcc
Q psy8420          47 NQSLLHLCVNYET-PV----------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAI  109 (199)
Q Consensus        47 g~t~L~~a~~~~~-~~----------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~  109 (199)
                      ..++|+.|+..|+ ++                |.+|++.|+..++.+++++|++.|++++..+..|.||||+|+..++. 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA-   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH-
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH-
Confidence            3578888888887 22                67889999999999999999999999999999999999999999999 


Q ss_pred             cchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420         110 SDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKIN  159 (199)
Q Consensus       110 ~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~  159 (199)
                             +++++|+++|++++.+|..|.||||+    ...++++.|++.+.+..
T Consensus        81 -------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  127 (153)
T 1awc_B           81 -------NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH  127 (153)
T ss_dssp             -------HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             -------HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence                   99999999999999999999999998    45678888888866543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.87  E-value=1.4e-22  Score=155.65  Aligned_cols=160  Identities=11%  Similarity=-0.000  Sum_probs=101.3

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      ..|.||||.|++.+.         .+.++.|+++|++++.. ..|.||||.|+..               ++.+++++|+
T Consensus         3 ~~g~t~L~~a~~~~~---------~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~---------------g~~~~v~~Ll   57 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNL---------RKTGSERIAHGMRVKFN-PLPLALLLDSSLE---------------GEFDLVQRII   57 (239)
T ss_dssp             --------------------------------------------CHHHHHHHHHH---------------TCHHHHHHHT
T ss_pred             ccccccCchhhhhhh---------HHHHHHHhccCCCcccC-chhhHHHHHHHHc---------------CCHHHHHHHH
Confidence            579999999999999         89999999999999864 6789999999999               9999999999


Q ss_pred             hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccc
Q psy8420          83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKI  158 (199)
Q Consensus        83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~  158 (199)
                      +.|++++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.+.+.
T Consensus        58 ~~g~~~~~~d~~g~t~L~~A~~~g~~--------~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  129 (239)
T 1ycs_B           58 YEVDDPSLPNDEGITALHNAVCAGHT--------EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV  129 (239)
T ss_dssp             STTSSCCCCCTTSCCHHHHHHHHTCH--------HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            99999999999999999999999999        99999999999999999999999999    5677899999987765


Q ss_pred             hhHHHHHH-HHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420         159 NLKCLAAK-VITQNNITYKGLVPHDLESFIELHGTALDK  196 (199)
Q Consensus       159 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  196 (199)
                      ........ ........... -...+.++|..+|++++.
T Consensus       130 ~~~~~~~~~t~l~~a~~~~~-g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          130 FAMTYSDMQTAADKCEEMEE-GYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             TCCCSSSCCCHHHHCCSSST-TCCCHHHHHHHHHHHTTT
T ss_pred             ceecCCCCcchHHHHHHhhh-ccHHHHHHHHHhhhcccc
Confidence            54322111 11111111221 234567888888888764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=2.4e-22  Score=154.95  Aligned_cols=108  Identities=22%  Similarity=0.354  Sum_probs=104.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.||||+|+..|+         .++++.|+. |++++.++..|.||||+|+..               ++.+++++|
T Consensus        42 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~---------------g~~~~v~~L   96 (244)
T 3ui2_A           42 VSEYETPWWTAARKAD---------EQALSQLLE-DRDVDAVDENGRTALLFVAGL---------------GSDKCVRLL   96 (244)
T ss_dssp             HHHHHHHHHHHHTTTC---------HHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH---------------TCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCC---------HHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC---------------CCHHHHHHH
Confidence            3578999999999999         999999999 999999999999999999999               999999999


Q ss_pred             HhcCCCCccCC-CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          82 IRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        82 l~~ga~v~~~d-~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      +++|++++.++ ..|.||||+|+..++.        +++++|+++|++++.+|..|.||||+
T Consensus        97 l~~ga~~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~ga~~~~~d~~g~t~l~~  150 (244)
T 3ui2_A           97 AEAGADLDHRDMRGGLTALHMAAGYVRP--------EVVEALVELGADIEVEDERGLTALEL  150 (244)
T ss_dssp             HHTTCCTTCCCSSSCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             HHcCCCCCcCCCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            99999999998 8899999999999999        99999999999999999999999998

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.87  E-value=1.3e-22  Score=158.19  Aligned_cols=125  Identities=23%  Similarity=0.248  Sum_probs=110.1

Q ss_pred             ccchhhHHHHHHHH---hhccccCChhHHHHHHHHHHcCCC-------ccc----ccCCCchHHHHHHhcCCCCCccccc
Q psy8420           2 EDNLVTSLYLLVIL---TKVIKNISEEEEYRIYKLVFSLNK-------LSV----ASRQNQSLLHLCVNYETPVDTFHTN   67 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~---~~~~~~~~~~~~~~~~~ll~~g~~-------i~~----~~~~g~t~L~~a~~~~~~~~~~~l~   67 (199)
                      |..|.||||+|+..   |+         .++++.|++.|++       ++.    ++..|.||||+|+..          
T Consensus        51 ~~~g~tpL~~A~~~~~~g~---------~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~----------  111 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQ---------NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER----------  111 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTB---------CHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT----------
T ss_pred             CcCCCCHHHHHHHHHhcCC---------hHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc----------
Confidence            56899999999987   77         8999999999865       232    567899999999999          


Q ss_pred             ccccCCcHHHHHHHHhcCCCCccCCC--------------CCCcHHHHHHhccCcccchhhHHHHHHHHHH---cCCCCC
Q psy8420          68 DVCKFPCAATTKLLIRCGADVNAKDY--------------QGNTPLHIIATYERAISDFQTLHTIILDLTE---NGAHMD  130 (199)
Q Consensus        68 ~~~~~~~~~~~~~Ll~~ga~v~~~d~--------------~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~---~ga~~~  130 (199)
                           ++.+++++|+++|++++..+.              .|.||||+|+..++.        +++++|++   +|++++
T Consensus       112 -----g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~--------~~v~~Ll~~~~~gad~~  178 (273)
T 2pnn_A          112 -----RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL--------AIVKFLLQNSWQPADIS  178 (273)
T ss_dssp             -----TCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH--------HHHHHHHHCSSCCCCTT
T ss_pred             -----CCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCH--------HHHHHHHhcccCCCCce
Confidence                 999999999999999999997              799999999999999        99999999   999999


Q ss_pred             CCCCCCCCcccccc-------------chHHHHHHhhcccc
Q psy8420         131 TVNNKGLTPIQATT-------------TGVADLILRTLTKI  158 (199)
Q Consensus       131 ~~~~~g~tpl~~~~-------------~~~~~~ll~~~~~~  158 (199)
                      .+|..|.||||++.             .++++.|++.+.+.
T Consensus       179 ~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  219 (273)
T 2pnn_A          179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL  219 (273)
T ss_dssp             CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc
Confidence            99999999999922             46677777775543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.86  E-value=8.7e-22  Score=157.96  Aligned_cols=138  Identities=17%  Similarity=0.161  Sum_probs=118.5

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC-CCchHHHHHHhcCC-CC--------------------
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR-QNQSLLHLCVNYET-PV--------------------   61 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~-~g~t~L~~a~~~~~-~~--------------------   61 (199)
                      .|.|+||.|+..|+         +++|+.||++|+++|.++. .|.||||+|+..|+ ++                    
T Consensus        24 ~~~t~L~~Av~~g~---------~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~   94 (337)
T 4g8k_A           24 EDNHLLIKAVQNED---------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT   94 (337)
T ss_dssp             HHHHHHHHHHHTTC---------HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCChHHHHHHHcCC---------HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCc
Confidence            57899999999999         9999999999999998876 59999999999988 33                    


Q ss_pred             ------------------------------CcccccccccCCcHHHHHHHHhcCCCCccC----------CCCCCcHHHH
Q psy8420          62 ------------------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAK----------DYQGNTPLHI  101 (199)
Q Consensus        62 ------------------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~----------d~~g~tpl~~  101 (199)
                                                    |.+|++.|+..++.+++++++++|++++..          +..|.||||+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~  174 (337)
T 4g8k_A           95 PFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  174 (337)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHH
T ss_pred             hhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHH
Confidence                                          467888899999999999999999998764          4468999999


Q ss_pred             HHhccCcccchhhHHHHHHHHHH-cCCCCCCCCCCCCCcccc----cc----chHHHHHHhhcccc
Q psy8420         102 IATYERAISDFQTLHTIILDLTE-NGAHMDTVNNKGLTPIQA----TT----TGVADLILRTLTKI  158 (199)
Q Consensus       102 a~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~----~~----~~~~~~ll~~~~~~  158 (199)
                      |+..|+.        +++++|++ .|++++.+|..|.||++.    +.    ..+++.|++.+.+.
T Consensus       175 A~~~g~~--------~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~  232 (337)
T 4g8k_A          175 AAEKGHV--------EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV  232 (337)
T ss_dssp             HHHHTCH--------HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT
T ss_pred             HHHCCCH--------HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC
Confidence            9999999        99999995 699999999999999986    22    24667788776543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.86  E-value=2.3e-21  Score=138.88  Aligned_cols=117  Identities=21%  Similarity=0.284  Sum_probs=108.5

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      .|.||||+ +..++         .++++.|++.|++++.++..|.||||+|+..               ++.+++++|++
T Consensus        35 ~g~t~L~~-~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll~   89 (156)
T 1bd8_A           35 FGKTALQV-MMFGS---------TAIALELLKQGASPNVQDTSGTSPVHDAART---------------GFLDTLKVLVE   89 (156)
T ss_dssp             TSCCHHHH-SCTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHHHH
T ss_pred             CCCcHHHH-HHcCC---------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc---------------CcHHHHHHHHH
Confidence            05699999 88998         9999999999999999999999999999999               99999999999


Q ss_pred             cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      +|++++.+|..|.||||+|+..++.        +++++|++. ++++.+|..|.|||++    ...++++.|++.
T Consensus        90 ~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           90 HGADVNVPDGTGALPIHLAVQEGHT--------AVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHHTCH--------HHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCCCCCCcCCCCCcHHHHHHHhChH--------HHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999999999        999999999 9999999999999998    455677777654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.86  E-value=6.3e-22  Score=161.39  Aligned_cols=138  Identities=15%  Similarity=0.181  Sum_probs=123.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcC---CCcccccCCCchHHHHHHhcC---C-CC-------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSL---NKLSVASRQNQSLLHLCVNYE---T-PV-------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g---~~i~~~~~~g~t~L~~a~~~~---~-~~-------------   61 (199)
                      |..|.||||+|+..++         .++++.|+..|   ++++.++..|.||||+|+..+   + ++             
T Consensus       196 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~  266 (373)
T 2fo1_E          196 NKSERSALHQAAANRD---------FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY  266 (373)
T ss_dssp             CTTCCCHHHHHHHTTC---------HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred             CCCCCCHHHHHHHCCC---------HHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence            5788999999999999         89999999987   799999999999999999876   2 11             


Q ss_pred             ------------CcccccccccCCcHHHHHHHHhcC-CCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420          62 ------------DTFHTNDVCKFPCAATTKLLIRCG-ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH  128 (199)
Q Consensus        62 ------------~~~~l~~~~~~~~~~~~~~Ll~~g-a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~  128 (199)
                                  |.+|++.|+..++.+++++|++.| ++++.+|..|.||||+|+..++.        +++++|+++|++
T Consensus       267 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~--------~iv~~Ll~~gad  338 (373)
T 2fo1_E          267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI--------EVVMYLIQQGAS  338 (373)
T ss_dssp             CSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHTTCC
T ss_pred             ccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCC
Confidence                        467899999999999999999876 99999999999999999999999        999999999999


Q ss_pred             CCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420         129 MDTVNNKGLTPIQA----TTTGVADLILRTLT  156 (199)
Q Consensus       129 ~~~~~~~g~tpl~~----~~~~~~~~ll~~~~  156 (199)
                      ++.+|..|.|||++    ...++++.|++.+.
T Consensus       339 ~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          339 VEAVDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            99999999999999    55677888887643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=148.79  Aligned_cols=174  Identities=15%  Similarity=0.068  Sum_probs=133.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC-CCchHHHHHHhcCC-CC-----------------C
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR-QNQSLLHLCVNYET-PV-----------------D   62 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~-~g~t~L~~a~~~~~-~~-----------------~   62 (199)
                      +..|.||||+|+..++         .++++.|++.|.+++.... .|.||||+|+..++ ++                 +
T Consensus        39 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  109 (240)
T 3eu9_A           39 DKENVTLLHWAAINNR---------IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG  109 (240)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCCCHHHHHHHhCC---------HHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            5678899999999998         8999999999988886554 58899999998888 22                 5


Q ss_pred             cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccC-cccchhhHHHHHHHHHHcCCCCCCCCC-CCCCcc
Q psy8420          63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYER-AISDFQTLHTIILDLTENGAHMDTVNN-KGLTPI  140 (199)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~-~~~~~~~~~~~~~~Ll~~ga~~~~~~~-~g~tpl  140 (199)
                      .+|++.|+..++.+++++|+++|++++..+..|.||+|+|+..+. .        .++++|++.|++++..+. .|.|||
T Consensus       110 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~--------~~~~~L~~~~~~~~~~~~~~g~t~L  181 (240)
T 3eu9_A          110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV--------DPTRLLLTFNVSVNLGDKYHKNTAL  181 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS--------TTHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred             CCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH--------HHHHHHHhcCCCcchhhccCCCcHH
Confidence            678888999999999999999999999999999999999997665 6        889999999999999987 999999


Q ss_pred             cc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhc
Q psy8420         141 QA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALD  195 (199)
Q Consensus       141 ~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  195 (199)
                      |+    ...++++.|++.+.+.......+.......+..   -..++.+++..++....
T Consensus       182 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~---~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          182 HWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR---KNVWMINHLQEARQAKG  237 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHT---TCHHHHHHHHHHC----
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---CcHHHHHHHHHhhhccC
Confidence            98    567789999998766554322111111111111   14456677777776543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.85  E-value=6e-22  Score=142.40  Aligned_cols=107  Identities=12%  Similarity=0.125  Sum_probs=88.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCch-HHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQS-LLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t-~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|.||||+|+ .++         .++++.|++.|++++.++..|.| |||+|+..               ++.+++++
T Consensus        42 ~~~g~t~L~~A~-~~~---------~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~---------------~~~~~v~~   96 (156)
T 1bi7_B           42 NSYGRRPIQVMM-MGS---------ARVAELLLLHGAEPNCADPATLTRPVHDAARE---------------GFLDTLVV   96 (156)
T ss_dssp             CSSSCCTTTSSC-TTC---------HHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH---------------TCHHHHHH
T ss_pred             CCCCCCHHHHHH-cCC---------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHC---------------CCHHHHHH
Confidence            578999999985 777         89999999999999999999999 99999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccc
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ  141 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  141 (199)
                      |+++|++++.+|..|.||||+|+..++.        +++++|+++|++++.++..|.||.+
T Consensus        97 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           97 LHRAGARLDVRDAWGRLPVDLAEELGHR--------DVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHTCCSSCCCTTCCCHHHHHHHHTCH--------HHHHHHSSCC---------------
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHhCHH--------HHHHHHHHcCCCCCccCcCcCcccc
Confidence            9999999999999999999999999999        9999999999999999999999976

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=8.1e-21  Score=154.77  Aligned_cols=120  Identities=15%  Similarity=0.186  Sum_probs=112.0

Q ss_pred             chhhHHHHHHHH-hhccccCChhHHHHHHHHHHcCCCccccc--CCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           4 NLVTSLYLLVIL-TKVIKNISEEEEYRIYKLVFSLNKLSVAS--RQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         4 ~g~t~Lh~a~~~-~~~~~~~~~~~~~~~~~ll~~g~~i~~~~--~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      .+.|+||.|+.. +.         .++++.|+..|++++..+  ..|.||||+|+..               ++.+++++
T Consensus       198 ~~~t~L~~Aa~~~g~---------~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~---------------g~~~iv~~  253 (368)
T 3jue_A          198 HPGALLFRASGHPPS---------LPTMADALAHGADVNWVNGGQDNATPLIQATAA---------------NSLLACEF  253 (368)
T ss_dssp             CHHHHHHHHTSSSCC---------HHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT---------------TCHHHHHH
T ss_pred             CCCcHHHHHHHccCC---------HHHHHHHHHcCCCCCccccccCCCCHHHHHHHC---------------CCHHHHHH
Confidence            356899999999 88         999999999999999988  8999999999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhc
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTL  155 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~  155 (199)
                      |+++|+++|..|..|+||||+|+..++.        +++++|+++|++++..|..|.||||+    ...++++.|+..+
T Consensus       254 LL~~Gadvn~~d~~G~TpLh~A~~~g~~--------~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          254 LLQNGANVNQADSAGRGPLHHATILGHT--------GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCcH--------HHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999        99999999999999999999999998    5567788887764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.83  E-value=6.6e-21  Score=141.36  Aligned_cols=130  Identities=12%  Similarity=0.065  Sum_probs=106.6

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc-CCCchHHHHHHhcCCCCCcccccccccCCc----HHHH
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS-RQNQSLLHLCVNYETPVDTFHTNDVCKFPC----AATT   78 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~-~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~----~~~~   78 (199)
                      .++++|+.|++.|.         .+.++.++..+.  +.++ ..|.||||+|+..               ++    .+++
T Consensus         5 ~~~~~l~~Aa~~g~---------~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~---------------~~~~~~~~iv   58 (186)
T 3t8k_A            5 SEYRTVSAAAMLGT---------YEDFLELFEKGY--EDKESVLKSNILYDVLRN---------------NNDEARYKIS   58 (186)
T ss_dssp             HHCSSHHHHHHHSC---------HHHHHHHHHHSS--SCHHHHHTTTHHHHHTTC---------------SCHHHHHHHH
T ss_pred             ccccHHHHHHHcCC---------HHHHHHHHhcCc--ccccccCCCCHHHHHHHc---------------CCcchHHHHH
Confidence            46799999999999         888998888764  4455 6899999999998               65    4599


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCC-Cccccccc---------hHH
Q psy8420          79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL-TPIQATTT---------GVA  148 (199)
Q Consensus        79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~~~---------~~~  148 (199)
                      ++|+++|+++|.+|..|+||||+|+..++..  -....+++++|+++|++++.+|..|. ||||++..         +++
T Consensus        59 ~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~--~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv  136 (186)
T 3t8k_A           59 MFLINKGADIKSRTKEGTTLFFPLFQGGGND--ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLY  136 (186)
T ss_dssp             HHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC--HHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc--hhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHH
Confidence            9999999999999999999999999987631  01112789999999999999999999 99999322         367


Q ss_pred             HHHHh-hcccchhH
Q psy8420         149 DLILR-TLTKINLK  161 (199)
Q Consensus       149 ~~ll~-~~~~~~~~  161 (199)
                      +.|++ .+++....
T Consensus       137 ~~Ll~~~gad~~~~  150 (186)
T 3t8k_A          137 KLIFSQSGLQLLIK  150 (186)
T ss_dssp             HHHHTSTTCCTTCC
T ss_pred             HHHHHhcCCCCccc
Confidence            88888 76665554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.83  E-value=6.4e-22  Score=151.31  Aligned_cols=124  Identities=14%  Similarity=0.072  Sum_probs=111.0

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.+|..|.||||+|+..               ++.+++++|
T Consensus        51 d~~g~tpLh~A~~~g~---------~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~---------------g~~~~v~~L  106 (229)
T 2vge_A           51 NEEGITALHNAICGAN---------YSIVDFLITAGANVNSPDSHGWTPLHCAASC---------------NDTVICMAL  106 (229)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence            5789999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCC-CCCCcHHHHH--HhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-ccchHHHHHHhhccc
Q psy8420          82 IRCGADVNAKD-YQGNTPLHII--ATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-TTTGVADLILRTLTK  157 (199)
Q Consensus        82 l~~ga~v~~~d-~~g~tpl~~a--~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-~~~~~~~~ll~~~~~  157 (199)
                      ++.|++++..+ ..|.||||+|  +..++.        +++++|+++|++++..|..|.||++. +.....+.+++.+.+
T Consensus       107 l~~ga~~~~~~~~~g~tpL~~A~a~~~~~~--------~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~  178 (229)
T 2vge_A          107 VQHGAAIFATTLSDGATAFEKCDPYREGYA--------DCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGES  178 (229)
T ss_dssp             HTTTCCTTCCCSSTTCCTGGGCCTTSTTHH--------HHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCE
T ss_pred             HHcCCCcccccCCCCCCHHHHHHHHhcChH--------HHHHHHHHcCCCcccccCCchHHHHHHhhccccccCcccccc
Confidence            99999999997 6999999999  888999        99999999999999999999999885 444444555555443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.82  E-value=1.1e-20  Score=136.03  Aligned_cols=109  Identities=15%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+. ++         .++++.|++.|++++.++..|.||||+|+..++ ++                 |.
T Consensus        35 ~~~g~t~L~~A~~-~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  104 (162)
T 1ihb_A           35 NGFGRTALQVMKL-GN---------PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN  104 (162)
T ss_dssp             CTTSCCHHHHCCS-SC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CccCccHHHHHHc-Cc---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            5678888888888 87         888888888888888888888888888888865 22                 45


Q ss_pred             ccccccccCCcHHHHHHHHhcCCC-CccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGAD-VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH  128 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~-v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~  128 (199)
                      +|++.|+..++.+++++|+++|++ ++..+..|.||+|+|+..++.        +++++|+++|++
T Consensus       105 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~Ll~~GAd  162 (162)
T 1ihb_A          105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN--------EVVSLMQANGAG  162 (162)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTC--
T ss_pred             CHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCH--------HHHHHHHHhCCC
Confidence            666666666777777777777776 577777777777777777777        777777777764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.82  E-value=3.7e-20  Score=134.60  Aligned_cols=108  Identities=18%  Similarity=0.144  Sum_probs=92.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..++ ++                 |.
T Consensus        44 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  114 (169)
T 2y1l_E           44 DASGWTPLHLAAFNGH---------LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH  114 (169)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            5789999999999999         999999999999999999999999999999977 22                 56


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG  126 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g  126 (199)
                      +|++.|+..++.+++++|+++|++++.+|..|.||+++|+..++.        +++++|+++|
T Consensus       115 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~L~~~G  169 (169)
T 2y1l_E          115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE--------DLAEILQKLN  169 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHTC-
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH--------HHHHHHHHcC
Confidence            777778888888888888888888888888888888888888887        8888887765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=8.7e-20  Score=144.96  Aligned_cols=124  Identities=20%  Similarity=0.267  Sum_probs=111.5

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccc------ccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV------ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT   78 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~------~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~   78 (199)
                      ..++||.|+..+.         .+.++.|+..|++++.      .+..|.||||+|+..+            ..++.+++
T Consensus       151 ~~~~L~~A~~~g~---------~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~------------~~~~~~iv  209 (301)
T 2b0o_E          151 EPQRLWTAICNRD---------LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVA------------NQASLPLV  209 (301)
T ss_dssp             CHHHHHHHHHTTC---------HHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTC------------CTTTHHHH
T ss_pred             hHHHHhhhhhccC---------HHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhc------------ccCcHHHH
Confidence            4578999999999         8999999999999998      6889999999999861            12689999


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      ++|++.|++++.+|..|+||||+|+..++.        +++++|+++|++++.+|..|.|||++    ...++++.|++.
T Consensus       210 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~--------~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~  281 (301)
T 2b0o_E          210 DFIIQNGGHLDAKAADGNTALHYAALYNQP--------DCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA  281 (301)
T ss_dssp             HHHHHHSSCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999        99999999999999999999999999    556778888877


Q ss_pred             ccc
Q psy8420         155 LTK  157 (199)
Q Consensus       155 ~~~  157 (199)
                      +.+
T Consensus       282 ga~  284 (301)
T 2b0o_E          282 QAG  284 (301)
T ss_dssp             HHH
T ss_pred             cCC
Confidence            443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=2.5e-19  Score=140.77  Aligned_cols=124  Identities=18%  Similarity=0.243  Sum_probs=109.9

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcc------cccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLS------VASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT   78 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~------~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~   78 (199)
                      ..++|+.|+..+.         .+.++.++..|++++      ..+..|.||||+|+..+            ..++.+++
T Consensus       130 ~l~~l~~a~~~~d---------~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~------------~~~~~~~v  188 (278)
T 1dcq_A          130 KLHSLCEAVKTRD---------IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV------------DRTSLHIV  188 (278)
T ss_dssp             HHHHHHHHHHTTC---------HHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHC------------CTTTHHHH
T ss_pred             hhhhhhhHhhhcc---------cHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhc------------ccchHHHH
Confidence            4578999999888         899999999999954      44789999999999872            12589999


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      ++|+++|+++|.+|..|+||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.
T Consensus       189 ~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~--------~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          189 DFLVQNSGNLDKQTGKGSTALHYCCLTDNA--------ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             HHHHHHCSCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHCCCCccccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999999999999999999999        99999999999999999999999999    566788888887


Q ss_pred             ccc
Q psy8420         155 LTK  157 (199)
Q Consensus       155 ~~~  157 (199)
                      ++.
T Consensus       261 ga~  263 (278)
T 1dcq_A          261 LSG  263 (278)
T ss_dssp             HTT
T ss_pred             CCC
Confidence            554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.81  E-value=1.8e-19  Score=126.53  Aligned_cols=93  Identities=22%  Similarity=0.200  Sum_probs=89.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.+|..|.||||+|+..               ++.+++++|
T Consensus        44 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~---------------~~~~~v~~L   99 (136)
T 2jab_A           44 DEYGLTPLYLATAHGH---------LEIVEVLLKNGADVNAVDAIGFTPLHLAAFI---------------GHLEIAEVL   99 (136)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---------------TCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence            5789999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG  126 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g  126 (199)
                      +++|++++.+|..|.||||+|+..++.        +++++|+++|
T Consensus       100 l~~g~~~~~~~~~g~tpl~~A~~~~~~--------~~~~~Ll~~G  136 (136)
T 2jab_A          100 LKHGADVNAQDKFGKTAFDISIGNGNE--------DLAEILQKLN  136 (136)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHC-
T ss_pred             HHcCCCCcCcCCCCCCHHHHHHHCCCH--------HHHHHHHHcC
Confidence            999999999999999999999999999        9999999876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.81  E-value=2.2e-20  Score=131.22  Aligned_cols=94  Identities=14%  Similarity=0.081  Sum_probs=90.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCC-CchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQ-NQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~-g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|.||||+|+. ++         .++++.|++.|++++.++.. |.||||+|+..               ++.+++++
T Consensus        42 ~~~g~t~L~~A~~-~~---------~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~   96 (136)
T 1d9s_A           42 NRFGRRPIQVMMM-GS---------AQVAELLLLHGAEPNCADPATLTRPVHDAARE---------------GFLDTLVV   96 (136)
T ss_dssp             CTTCCTTTTTSTT-SC---------HHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHH---------------TCHHHHHH
T ss_pred             CCCCCCHHHHHHc-CC---------HHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHc---------------CCHHHHHH
Confidence            5789999999999 99         99999999999999999999 99999999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH  128 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~  128 (199)
                      |+++|++++.+|..|.||||+|+..++.        +++++|+++|+|
T Consensus        97 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------~~~~~Ll~~Gad  136 (136)
T 1d9s_A           97 LHRAGARLDVCDAWGRLPVDLAEEQGHR--------DIARYLHAATGD  136 (136)
T ss_dssp             HHHTCCCCCCCSSSSSCHHHHHHHHTCH--------HHHHHHHHHHCC
T ss_pred             HHHcCCCCCccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCC
Confidence            9999999999999999999999999999        999999999986

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.81  E-value=5.4e-20  Score=146.13  Aligned_cols=104  Identities=18%  Similarity=0.120  Sum_probs=97.2

Q ss_pred             ccchhhHHHHHHHH---hhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420           2 EDNLVTSLYLLVIL---TKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT   78 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~---~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~   78 (199)
                      +..|.||||+|+..   ++         .++++.|++.|++++.+|..|.||||+|+..               ++.+++
T Consensus       187 ~~~g~t~Lh~A~~~~~~~~---------~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~---------------g~~~~v  242 (301)
T 2b0o_E          187 QAPEELVLHLAVKVANQAS---------LPLVDFIIQNGGHLDAKAADGNTALHYAALY---------------NQPDCL  242 (301)
T ss_dssp             CSCEECHHHHHHHTCCTTT---------HHHHHHHHHHSSCTTCCCTTCCCHHHHHHHT---------------TCHHHH
T ss_pred             CCCCccHHHHHHHhcccCc---------HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc---------------CCHHHH
Confidence            56899999999997   66         8999999999999999999999999999999               999999


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420          79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT  143 (199)
Q Consensus        79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~  143 (199)
                      ++|+++|++++.+|..|.||||+|+..++.        +++++|+++|++      .|.||||++
T Consensus       243 ~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~--------~iv~~Ll~~ga~------~g~tpLh~A  293 (301)
T 2b0o_E          243 KLLLKGRALVGTVNEAGETALDIARKKHHK--------ECEELLEQAQAG------TFAFPLHVD  293 (301)
T ss_dssp             HHHHHTTCCCSCCCTTSCCHHHHHHHHTCH--------HHHHHHHHHHHH------TTSSCCC--
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHhcCC------CCCChhHHH
Confidence            999999999999999999999999999999        999999999886      589999983

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.81  E-value=1.1e-20  Score=148.19  Aligned_cols=140  Identities=17%  Similarity=0.170  Sum_probs=122.0

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCC--cccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNK--LSVASRQNQSLLHLCVNYET-PV------------------D   62 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~--i~~~~~~g~t~L~~a~~~~~-~~------------------~   62 (199)
                      .+.+++|.|+..+.         ...++.++..+.+  +|.+|..|.||||+|+..|+ ++                  |
T Consensus        75 ~~~~~l~~a~~~~~---------~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g  145 (276)
T 4hbd_A           75 ACRSDAHPELVRRH---------LVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAG  145 (276)
T ss_dssp             HHSTTCCHHHHHHH---------HHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTS
T ss_pred             HhccCCCHHHHHHH---------HHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCC
Confidence            35677888888888         8899999887666  89999999999999999988 22                  6


Q ss_pred             cccccccc-----cCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCC
Q psy8420          63 TFHTNDVC-----KFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL  137 (199)
Q Consensus        63 ~~~l~~~~-----~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~  137 (199)
                      .+|++.++     ..+..+++++|++.|..++..+..|+||||+|+..++.        +++++|+++|++++.+|..|.
T Consensus       146 ~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~--------~~v~~Ll~~gad~n~~d~~G~  217 (276)
T 4hbd_A          146 YSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRV--------DVVKALLACEADVNVQDDDGS  217 (276)
T ss_dssp             CCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH--------HHHHHHHhCCCCCCCCCCCCC
Confidence            77888877     55789999999999999999999999999999999999        999999999999999999999


Q ss_pred             Ccccc----ccchHHHHHHh-hcccchh
Q psy8420         138 TPIQA----TTTGVADLILR-TLTKINL  160 (199)
Q Consensus       138 tpl~~----~~~~~~~~ll~-~~~~~~~  160 (199)
                      ||||+    ...++++.|++ .+.+...
T Consensus       218 TpLh~A~~~g~~~iv~~Ll~~~gad~~~  245 (276)
T 4hbd_A          218 TALMCACEHGHKEIAGLLLAVPSCDISL  245 (276)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTSTTCCTTC
T ss_pred             CHHHHHHHCCCHHHHHHHHhcCCCCCcC
Confidence            99999    56778899998 5555443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.80  E-value=5.9e-20  Score=136.02  Aligned_cols=108  Identities=19%  Similarity=0.130  Sum_probs=88.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..++ ++                 |.
T Consensus        65 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  135 (192)
T 2rfm_A           65 DIEGSTALIWAVKNNR---------LGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE  135 (192)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCC
T ss_pred             cccCccHHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            5679999999999999         999999999999999999999999999999966 22                 56


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG  126 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g  126 (199)
                      +|++.|+..++.+++++|+++|++++.+|..|.||+++|+..++.        +++++|+++|
T Consensus       136 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~--------~~v~~Ll~~~  190 (192)
T 2rfm_A          136 TPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ--------EVIKIFTEVR  190 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH--------HHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH--------HHHHHHHhcc
Confidence            677777777777777777777777777777777777777777777        7777777653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.80  E-value=4.7e-19  Score=121.78  Aligned_cols=95  Identities=31%  Similarity=0.335  Sum_probs=91.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..               ++.+++++|
T Consensus        32 ~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~---------------~~~~~~~~L   87 (126)
T 1n0r_A           32 DKNGRTPLHLAARNGH---------LEVVKLLLEAGADVNAKDKNGRTPLHLAARN---------------GHLEVVKLL   87 (126)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCc---------HHHHHHHHHcCCCCcccCCCCCcHHHHHHHc---------------ChHHHHHHH
Confidence            5689999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH  128 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~  128 (199)
                      +++|++++.+|..|.||+++|+..++.        +++++|+++|++
T Consensus        88 l~~g~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~Ll~~Gad  126 (126)
T 1n0r_A           88 LEAGADVNAKDKNGRTPLHLAARNGHL--------EVVKLLLEAGAY  126 (126)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHHTCC
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCcH--------HHHHHHHHcCCC
Confidence            999999999999999999999999999        999999999986

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=5.1e-19  Score=138.99  Aligned_cols=96  Identities=25%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             ccchhhHHHHHHHH---hhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420           2 EDNLVTSLYLLVIL---TKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT   78 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~---~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~   78 (199)
                      |..|.||||+|+..   ++         .++++.|++.|+++|.+|..|.||||+|+..               ++.+++
T Consensus       166 ~~~g~t~Lh~A~~~~~~~~---------~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~---------------g~~~~v  221 (278)
T 1dcq_A          166 HEPDETALHLAVRSVDRTS---------LHIVDFLVQNSGNLDKQTGKGSTALHYCCLT---------------DNAECL  221 (278)
T ss_dssp             SSTTCBHHHHHHHHCCTTT---------HHHHHHHHHHCSCTTCCCTTCCCHHHHHHHT---------------TCHHHH
T ss_pred             ccCCCCcchHHHHhcccch---------HHHHHHHHHCCCCccccCCCCCCHHHHHHHc---------------CCHHHH
Confidence            56799999999999   77         8999999999999999999999999999999               999999


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCC
Q psy8420          79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM  129 (199)
Q Consensus        79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~  129 (199)
                      ++|+++|++++.+|..|.||||+|+..++.        +++++|+++|++.
T Consensus       222 ~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          222 KLLLRGKASIEIANESGETPLDIAKRLKHE--------HCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHHHTTC
T ss_pred             HHHHHcCCCCCCccCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCC
Confidence            999999999999999999999999999999        9999999998854

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=8.6e-19  Score=118.82  Aligned_cols=90  Identities=22%  Similarity=0.247  Sum_probs=85.3

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      .|..|.||||+|+..++         .++++.|++.|++++.+|..|.||||+|+..               ++.+++++
T Consensus        20 ~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~---------------~~~~~v~~   75 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQ---------DDEVRILMANGADVAAKDKNGSTPLHLAARN---------------GHLEVVKL   75 (110)
T ss_dssp             --CCHHHHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT---------------TCHHHHHH
T ss_pred             cCCccchHHHHHHHcCC---------HHHHHHHHHcCCCCCccCCCCCCHHHHHHHc---------------CCHHHHHH
Confidence            36889999999999999         9999999999999999999999999999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHH
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDL  122 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~L  122 (199)
                      |+++|++++.+|..|.||||+|+..++.        +++++|
T Consensus        76 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------~~~~~L  109 (110)
T 2zgd_A           76 LLEAGADVXAQDKFGKTAFDISIDNGNE--------DLAEIL  109 (110)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHH
T ss_pred             HHHcCCCccccccCCCcHHHHHHHcCCH--------HHHHHh
Confidence            9999999999999999999999999999        998876

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=6.2e-19  Score=115.79  Aligned_cols=88  Identities=34%  Similarity=0.501  Sum_probs=80.1

Q ss_pred             CCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc
Q psy8420          46 QNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN  125 (199)
Q Consensus        46 ~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~  125 (199)
                      +|.||||+|+..               ++.+++++|++.|++++.+|..|+||||+|+..++.        +++++|+++
T Consensus         1 ~g~t~L~~A~~~---------------~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~--------~~v~~Ll~~   57 (93)
T 1n0q_A            1 NGRTPLHLAARN---------------GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL--------EVVKLLLEA   57 (93)
T ss_dssp             --CCHHHHHHHH---------------TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHT
T ss_pred             CCCcHHHHHHHc---------------CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCH--------HHHHHHHHc
Confidence            478999999999               999999999999999999999999999999999999        999999999


Q ss_pred             CCCCCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420         126 GAHMDTVNNKGLTPIQA----TTTGVADLILRTLT  156 (199)
Q Consensus       126 ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~  156 (199)
                      |++++.+|..|.||||+    ...++++.|++.++
T Consensus        58 ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999998    45667788877654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.75  E-value=4.4e-19  Score=142.17  Aligned_cols=114  Identities=11%  Similarity=0.012  Sum_probs=97.8

Q ss_pred             HHHHHHHhhccccCChhHHHHHHHHHHcCCCccc-ccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCC
Q psy8420           9 LYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV-ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGAD   87 (199)
Q Consensus         9 Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~-~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~   87 (199)
                      +|+++..+.         .++++.|+..|+++|. ++..|.||||+|+..               ++.+++++|+++|++
T Consensus       101 ~~~a~~~~~---------~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~---------------g~~~~v~~Ll~~Gad  156 (327)
T 1sw6_A          101 QHVSFDSLL---------QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI---------------ANLELVKHLVKHGSN  156 (327)
T ss_dssp             ---CHHHHH---------HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT---------------TCHHHHHHHHHTTCC
T ss_pred             hHHHHHhhH---------HHHHHHHHhcCCCcccccCCCCCcHHHHHHHc---------------CCHHHHHHHHHcCCC
Confidence            366666666         7888899999999999 899999999999999               999999999999999


Q ss_pred             CccCCCCCCcHHHHHHhccC---cccchhhHHHHHHHHHHcC-CCCCCCCCCCCCccccc--------cchHHHHHHhh
Q psy8420          88 VNAKDYQGNTPLHIIATYER---AISDFQTLHTIILDLTENG-AHMDTVNNKGLTPIQAT--------TTGVADLILRT  154 (199)
Q Consensus        88 v~~~d~~g~tpl~~a~~~~~---~~~~~~~~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~--------~~~~~~~ll~~  154 (199)
                      ++.+|..|+||||+|+..++   .        +++..|++++ ++++.+|..|.||||++        ..++++.|++.
T Consensus       157 ~n~~d~~g~TpLh~A~~~g~~~~~--------~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          157 RLYGDNMGESCLVKAVKSVNNYDS--------GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             TTBCCTTCCCHHHHHHHSSHHHHT--------TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHhcccccH--------HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            99999999999999999887   6        6777777775 78999999999999983        34667777766

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.74  E-value=1e-18  Score=132.22  Aligned_cols=103  Identities=15%  Similarity=0.122  Sum_probs=84.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|.||||+|+..++         .++++.|+.. |++++.+|..|.||||+|+..               ++.+++++
T Consensus       103 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~---------------~~~~~v~~  158 (222)
T 3ehr_A          103 DKAGSTALYWACHGGH---------KDIVEMLFTQPNIELNQQNKLGDTALHAAAWK---------------GYADIVQL  158 (222)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH---------------TCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHcCCCCCccccCCCCCCHHHHHHHc---------------CCHHHHHH
Confidence            5789999999999999         9999999998 999999999999999999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCC
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG  136 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g  136 (199)
                      |+++|++++.+|..|.||+++|+..+..        ++++.|+..|+.....+..+
T Consensus       159 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~--------~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          159 LLAKGARTDLRNIEKKLAFDMATNAACA--------SLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHHTCCSCCCCTTSCCHHHHCCSHHHH--------HHHC----------------
T ss_pred             HHHcCCCCccccCCCCCHHHHhcchhHH--------HHHHHHhccchhhhccchhh
Confidence            9999999999999999999999999988        99999999999988887655

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.73  E-value=1e-17  Score=117.41  Aligned_cols=100  Identities=21%  Similarity=0.264  Sum_probs=89.9

Q ss_pred             CCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHH
Q psy8420          37 LNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLH  116 (199)
Q Consensus        37 g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~  116 (199)
                      |+++ .++..|.||||+|+..               ++.+++++|++.|++++.+|..|.||||+|+..++.        
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~---------------~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------   56 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIK---------------GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHL--------   56 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHH---------------TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH--------
T ss_pred             CCCC-CcCCCCCCHHHHHHHc---------------CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH--------
Confidence            5677 7889999999999999               999999999999999999999999999999999999        


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchh
Q psy8420         117 TIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINL  160 (199)
Q Consensus       117 ~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~  160 (199)
                      +++++|+++|++++.+|..|.||||+    ...++++.|++.+.+...
T Consensus        57 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  104 (137)
T 3c5r_A           57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA  104 (137)
T ss_dssp             HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999    566788999988666443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.73  E-value=8.6e-18  Score=136.88  Aligned_cols=108  Identities=19%  Similarity=0.160  Sum_probs=89.0

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      ..|.||||+|+..++         .++++.|++.|++++.+|..|.||||+|+..               ++.+++++|+
T Consensus       233 ~~g~TpLh~Aa~~g~---------~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~---------------g~~~~v~~LL  288 (368)
T 3jue_A          233 QDNATPLIQATAANS---------LLACEFLLQNGANVNQADSAGRGPLHHATIL---------------GHTGLACLFL  288 (368)
T ss_dssp             TTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHHH
T ss_pred             cCCCCHHHHHHHCCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc---------------CcHHHHHHHH
Confidence            679999999999999         9999999999999999999999999999999               9999999999


Q ss_pred             hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC---CCCCCCCCCCCCcccc
Q psy8420          83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG---AHMDTVNNKGLTPIQA  142 (199)
Q Consensus        83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g---a~~~~~~~~g~tpl~~  142 (199)
                      ++|++++..|..|.||||+|+..++.        +++++|+..+   ++....+..+.|++++
T Consensus       289 ~~Gad~~~~d~~G~TpL~~A~~~g~~--------~iv~lLl~~~~~~~~~~~~~~~~~t~l~i  343 (368)
T 3jue_A          289 KRGADLGARDSEGRDPLTIAMETANA--------DIVTLLRLAKMREAEAAQGQAGDETYLDI  343 (368)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHHHC------------------
T ss_pred             HCcCCCCCcCCCCCCHHHHHHHCCCH--------HHHHHHHHcCCCcccccccCCCCCCHHHH
Confidence            99999999999999999999999999        9999999775   4445566678888876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.72  E-value=2.5e-17  Score=121.20  Aligned_cols=83  Identities=22%  Similarity=0.287  Sum_probs=78.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc-CCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS-RQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~-~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.++ ..|.||||+|+..               ++.+++++
T Consensus        73 d~~g~t~L~~A~~~~~---------~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~---------------~~~~~v~~  128 (183)
T 3deo_A           73 DENGRTALLFVAGLGS---------DKCVRLLAEAGADLDHRDMRGGLTALHMAAGY---------------VRPEVVEA  128 (183)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT---------------TCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc---------------CcHHHHHH
Confidence            6789999999999999         999999999999999998 8999999999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCc
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERA  108 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~  108 (199)
                      |+++|++++.+|..|.||||+|+..++.
T Consensus       129 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~  156 (183)
T 3deo_A          129 LVELGADIEVEDERGLTALELAREILKT  156 (183)
T ss_dssp             HHHHTCCTTCCCTTSCCHHHHHHHHHHT
T ss_pred             HHHcCCCCcCCCCCCCCHHHHHHHhccC
Confidence            9999999999999999999999886544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.71  E-value=3.2e-17  Score=126.17  Aligned_cols=104  Identities=20%  Similarity=0.253  Sum_probs=90.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc-CCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS-RQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~-~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.++ ..|.||||+|+..               ++.+++++
T Consensus        74 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~---------------g~~~~v~~  129 (244)
T 3ui2_A           74 DENGRTALLFVAGLGS---------DKCVRLLAEAGADLDHRDMRGGLTALHMAAGY---------------VRPEVVEA  129 (244)
T ss_dssp             CTTSCBHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT---------------TCHHHHHH
T ss_pred             CCCCCCHHHHHHHCCC---------HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc---------------CCHHHHHH
Confidence            5789999999999999         999999999999999998 7899999999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      |+++|++++.+|..|.||||+|+..+..                         ..+.||+++    ...++++.|++.
T Consensus       130 Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-------------------------~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          130 LVELGADIEVEDERGLTALELAREILKT-------------------------TPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHHHTT-------------------------CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHHHhc-------------------------cCCCCHHHHHHHcChHHHHHHHHHh
Confidence            9999999999999999999999865322                         456788887    344556666554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.71  E-value=8.5e-18  Score=115.78  Aligned_cols=80  Identities=16%  Similarity=0.077  Sum_probs=76.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.+|..|.||||+|+..               ++.+++++|
T Consensus        37 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~---------------~~~~~v~~L   92 (123)
T 3aaa_C           37 LEGGRKPLHYAADCGQ---------LEILEFLLLKGADINAPDKHHITPLLSAVYE---------------GHVSCVKLL   92 (123)
T ss_dssp             CTTSSCHHHHHHHTTC---------HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence            5689999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhc
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATY  105 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~  105 (199)
                      +++|++++.+|..|.||+|+|...
T Consensus        93 l~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           93 LSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             HHcCCCCCCcCCCCCCHHHHhCCH
Confidence            999999999999999999998443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.71  E-value=3.2e-17  Score=111.45  Aligned_cols=96  Identities=30%  Similarity=0.389  Sum_probs=88.0

Q ss_pred             cccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHH
Q psy8420          42 VASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD  121 (199)
Q Consensus        42 ~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~  121 (199)
                      .+|..|.||||+|+..               ++.+++++|++.|++++..|..|.||||+|+..++.        +++++
T Consensus         4 ~~d~~g~t~L~~A~~~---------------~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--------~~~~~   60 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKN---------------GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHA--------EIVKL   60 (115)
T ss_dssp             CCSCSSCCHHHHHHHH---------------TCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCH--------HHHHH
T ss_pred             ccCCCCCCHHHHHHHc---------------CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH--------HHHHH
Confidence            4678999999999999               999999999999999999999999999999999999        99999


Q ss_pred             HHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchh
Q psy8420         122 LTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINL  160 (199)
Q Consensus       122 Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~  160 (199)
                      |+++|++++.+|..|.|||++    ...++++.|++.+++...
T Consensus        61 Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~  103 (115)
T 2l6b_A           61 LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA  103 (115)
T ss_dssp             HTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHH
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc
Confidence            999999999999999999998    456778888888766444

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.70  E-value=2.3e-18  Score=140.68  Aligned_cols=150  Identities=12%  Similarity=0.099  Sum_probs=105.8

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCC---cccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNK---LSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTK   79 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~---i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~   79 (199)
                      .++.||||+|+..|+         .++++.|++.|+.   .+..+..|.||||+|+..               |+.++++
T Consensus        90 ~~~~T~Lh~Aa~~G~---------~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~---------------G~~eiv~  145 (376)
T 2aja_A           90 IKSEVICFVAAITGC---------SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN---------------GHLHVLN  145 (376)
T ss_dssp             CCHHHHHHHHHHHCC---------HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT---------------TCHHHHH
T ss_pred             CCcCCHHHHHHHcCC---------HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc---------------CCHHHHH
Confidence            356799999999999         9999999999872   223445678999999999               8889999


Q ss_pred             HHHhcCCCC---ccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCC--CCCCCCCcccc-c----cchHHH
Q psy8420          80 LLIRCGADV---NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDT--VNNKGLTPIQA-T----TTGVAD  149 (199)
Q Consensus        80 ~Ll~~ga~v---~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~--~~~~g~tpl~~-~----~~~~~~  149 (199)
                      +|+++|+++   +..+.. .||||+|+..|+.        +++++|+++|++++.  .|..|.||||+ +    ..++++
T Consensus       146 ~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~--------eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          146 RLCELAPTEIMAMIQAEN-YHAFRLAAENGHL--------HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             HHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCH--------HHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             HHHhCCCCccccccCCCC-CCHHHHHHHCCCH--------HHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            999888752   222223 8899999998888        899999988888877  78888889887 3    245677


Q ss_pred             HHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhc
Q psy8420         150 LILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALD  195 (199)
Q Consensus       150 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  195 (199)
                      .|++.+..       .......... .|  ..++.+|+..+|++++
T Consensus       217 ~Ll~~ga~-------~~taL~~Aa~-~g--~~evv~lL~~~ga~~~  252 (376)
T 2aja_A          217 FLLDCPVM-------LAYAEIHEFE-YG--EKYVNPFIARHVNRLK  252 (376)
T ss_dssp             HHTTSHHH-------HHHHHHCTTT-TT--TTTHHHHHHHHHHHHH
T ss_pred             HHHhCCCc-------cchHHHHHHH-CC--CHHHHHHHHhcCcccc
Confidence            77775421       1111111111 12  2337788888877664

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=3.1e-16  Score=106.06  Aligned_cols=80  Identities=28%  Similarity=0.304  Sum_probs=73.4

Q ss_pred             cccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHH
Q psy8420          40 LSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTII  119 (199)
Q Consensus        40 i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~  119 (199)
                      +...+..|.|+||+|+..               ++.+++++|++.|++++.+|..|+||||+|+..++.        +++
T Consensus        17 ~~~~~~~g~t~L~~A~~~---------------g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~--------~~v   73 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARA---------------GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL--------EVV   73 (110)
T ss_dssp             -----CCHHHHHHHHHHH---------------TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--------HHH
T ss_pred             ccccCCccchHHHHHHHc---------------CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH--------HHH
Confidence            445677899999999999               999999999999999999999999999999999999        999


Q ss_pred             HHHHHcCCCCCCCCCCCCCcccc
Q psy8420         120 LDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus       120 ~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      ++|+++|++++.+|..|.||||+
T Consensus        74 ~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           74 KLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHcCCCccccccCCCcHHHH
Confidence            99999999999999999999998

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.64  E-value=6.1e-18  Score=138.17  Aligned_cols=117  Identities=9%  Similarity=-0.043  Sum_probs=100.6

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCc---ccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKL---SVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT   78 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i---~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~   78 (199)
                      +..|.||||+|+..|+         .++++.|++.|+++   +..+.. .||||+|+..               |+.+++
T Consensus       125 ~~~~~tpL~~Aa~~G~---------~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~---------------G~~eiv  179 (376)
T 2aja_A          125 QAENYQAFRLAAENGH---------LHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN---------------GHLHVL  179 (376)
T ss_dssp             CHHHHHHHHHHHHTTC---------HHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT---------------TCHHHH
T ss_pred             ccCCCCHHHHHHHcCC---------HHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC---------------CCHHHH
Confidence            4578999999999999         99999999999762   322223 8999999999               999999


Q ss_pred             HHHHhcCCCCcc--CCCCCCcHHHHHH-hccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHH
Q psy8420          79 KLLIRCGADVNA--KDYQGNTPLHIIA-TYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLI  151 (199)
Q Consensus        79 ~~Ll~~ga~v~~--~d~~g~tpl~~a~-~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~l  151 (199)
                      ++|+++|++++.  .|..|.||||+|+ ..|+.        +++++|++.|++       |.||+++    +..+++++|
T Consensus       180 ~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~--------eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL  244 (376)
T 2aja_A          180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHH--------NVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFI  244 (376)
T ss_dssp             HHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH--------HHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHH
T ss_pred             HHHHHcCCccchhccCCCCCCHHHHHHHHCCCH--------HHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHH
Confidence            999999999887  8889999999999 99999        999999997753       7899998    456788888


Q ss_pred             Hhhcccc
Q psy8420         152 LRTLTKI  158 (199)
Q Consensus       152 l~~~~~~  158 (199)
                      ++.+.+.
T Consensus       245 ~~~ga~~  251 (376)
T 2aja_A          245 ARHVNRL  251 (376)
T ss_dssp             HHHHHHH
T ss_pred             HhcCccc
Confidence            8875543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 70  CKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM 129
                    K L++ GA  N  + +  TPLH+ A              +   L +N A +
Sbjct: 8   SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT--------EVAKYLLQNKAKV 59

Query: 130 DTVNNKGLTPI 140
           +       TP+
Sbjct: 60  NAKAKDDQTPL 70

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 7e-05
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
              LL++ GA  N     G TPL I            ++  ++  +T+  + +   +   
Sbjct: 345 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGY-----ISVTDVLKVVTDETSFVLVSDKHR 399

Query: 137 LT 138
           ++
Sbjct: 400 MS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 8/88 (9%)

Query: 54  CVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQ 113
                T       +   K+      +LL+   A  NA    G TPLH+   +        
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL----- 178

Query: 114 TLHTIILDLTENGAHMDTVNNKGLTPIQ 141
               I+  L   G    +    G TP+ 
Sbjct: 179 ---DIVKLLLPRGGSPHSPAWNGYTPLH 203

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 70  CKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
            +       K L++  A VNAK     TPLH  A  
Sbjct: 41  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI 76

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 47  NQSLLHLCVNYETPVDTFHT--NDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIAT 104
              L+   V  +      +T  +    +      K L++  ADVNAK   G +PLH  A 
Sbjct: 280 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 339

Query: 105 YERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ 141
                        I+  L +NGA  + V++ G TP+ 
Sbjct: 340 QGH--------TDIVTLLLKNGASPNEVSSDGTTPLA 368

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 56  NYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
           N                   A T LL+  GADVN +  +G TPL +    +        L
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH-------L 232

Query: 116 HTIILDLTENGAHMDTVNNKGLTPIQ 141
             +   L +    ++  ++ G T + 
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALL 258

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN 133
           +LL +   ++N  D  G T L +    +           I   L + GA  D  +
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKL--------KKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 16/64 (25%)

Query: 43  ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKD-YQGNTPLHI 101
           A+ ++  LL   V            DV         + L+  GA+VN ++   G TPLH 
Sbjct: 1   AAVEDNHLLIKAVQN---------EDV------DLVQQLLEGGANVNFQEEEGGWTPLHN 45

Query: 102 IATY 105
               
Sbjct: 46  AVQM 49

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 80  LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
           LL   GADVNA D  G   L           D   +  I   L ++GA ++    +G TP
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSS----DDSDVEAITHLLLDHGADVNVRGERGKTP 222

Query: 140 IQ 141
           + 
Sbjct: 223 LI 224

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 81  LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
           LI+   DVN KDY G TPLH  A + +              L EN   M+ VN  G T  
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGK--------EEACRILVENLCDMEAVNKVGQTAF 269

Query: 141 QATTTGVADLILRTLTKINL 160
                 +   +     K NL
Sbjct: 270 DVADEDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 44  SRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAA------TTKLLIRCGADVNAKDYQGNT 97
           ++    +L L +     V+    +       AA        ++L+    D+ A +  G T
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT 267

Query: 98  PLHIIA 103
              +  
Sbjct: 268 AFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATY 105
             L+  GAD+N  +  G T LH     
Sbjct: 57  LRLLERGADINYANVDGLTALHQACID 83

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 52  HLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISD 111
            + VN +        +           K L+  GA VNA +  G TPLH  A+  R    
Sbjct: 60  GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR---- 115

Query: 112 FQTLHTIILDLTENGAHMDTVNNKGLTPI 140
               H I + L E GA+ D  ++   T +
Sbjct: 116 ----HEIAVMLLEGGANPDAKDHYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 25/100 (25%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT------------------- 117
              +L+  GA+ +AKD+   T +H  A           L+                    
Sbjct: 118 IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 177

Query: 118 ------IILDLTENGAHMDTVNNKGLTPIQATTTGVADLI 151
                     L   GA +   N +  TP+Q    G+  ++
Sbjct: 178 DEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL 217

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 25/87 (28%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISD-------------------------FQ 113
           + ++   +     D    T LH   +                                  
Sbjct: 21  ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 80

Query: 114 TLHTIILDLTENGAHMDTVNNKGLTPI 140
               I+  L   GA ++ VN  G TP+
Sbjct: 81  GRDEIVKALLGKGAQVNAVNQNGCTPL 107

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-06
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 43  ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAA------TTKLLIRCGADVNAKDYQGN 96
               + S++ L + +   V+    +       A+        + L+R GAD + K+   +
Sbjct: 152 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 211

Query: 97  TPLHIIATYER 107
           TPL +  +   
Sbjct: 212 TPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHI 101
            L  + G +++  +    TPLH+
Sbjct: 24  NLFQQGGRELDIYNNLRQTPLHL 46

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 65  HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
             +   +   A+  +LL++ GAD  A+ Y G TPL      
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 10/127 (7%)

Query: 15  LTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPC 74
           L  +I            K    +    +  +QN+ +       E+  +  +         
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 240

Query: 75  AATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN 134
               K +I     +NA+D  G+T L+I A             +I+  L + GA     N 
Sbjct: 241 NLDLKWII--ANMLNAQDSNGDTCLNIAARLGNI--------SIVDALLDYGADPFIANK 290

Query: 135 KGLTPIQ 141
            GL P+ 
Sbjct: 291 SGLRPVD 297

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 1e-05
 Identities = 7/50 (14%), Positives = 15/50 (30%)

Query: 52  HLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
           H   + +   D        +      +K L+   A+    D+    P  +
Sbjct: 146 HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDV 195

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 79  KLLIRCGADVNAK-DYQGNTPLHIIATYERA 108
             L+  GA++NA  D  G T LH+ A + RA
Sbjct: 6   SDLLAQGAELNATMDKTGETSLHLAARFARA 36

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 77  TTKLLIRCGADVNAKDYQGNTPLHIIA 103
               LI+ GA V A D   +T   +  
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQLAQ 262

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 76  ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
           A T+ + R   ++        T LH IA+   A      +     +    GA ++ ++  
Sbjct: 15  AITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 73

Query: 136 GLTPIQ 141
             TP+ 
Sbjct: 74  ENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 42  VASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
           +  R N+++LH   +  +        +  +       K  I  GADVNA D   NTPL +
Sbjct: 28  IDPRHNRTVLHWIASNSSA-------EKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 80

Query: 102 IATY 105
               
Sbjct: 81  AVLA 84

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 63  TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDL 122
           T                L+   G++ + +D  G TP+ + A   R          +++ L
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR--------IEVVMYL 240

Query: 123 TENGAHMDTVNNKGLTPIQ-ATTTG---VADLILR 153
            + GA ++ V+    T  Q A       + D+  R
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 6e-05
 Identities = 7/44 (15%), Positives = 17/44 (38%)

Query: 63  TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYE 106
           T   + + +    A   L+ + GA+ +  D +G     +    +
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 217

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATY 105
           +LL    + +  KD  G  PLH   ++
Sbjct: 18  ELLHSKPSLLLQKDQDGRIPLHWSVSF 44

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 79  KLLIRCGADVNAKDYQGNTPLH 100
           + +    A +N ++    TPLH
Sbjct: 23  RQVKGDLAFLNFQNNLQQTPLH 44

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 14/127 (11%), Positives = 41/127 (32%), Gaps = 15/127 (11%)

Query: 19  IKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT 78
           ++ I       +++   S N+LS+ +   +  +H+ +     ++         +  A   
Sbjct: 16  LRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYY--AHYN 73

Query: 79  KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD----LTENGAHMDTVNN 134
           +   +  +D + K  +      + A          T  +  LD    L  +   +  +  
Sbjct: 74  RNAKQLWSDAHKKGIKSEVICFVAA---------ITGCSSALDTLCLLLTSDEIVKVIQA 124

Query: 135 KGLTPIQ 141
           +     +
Sbjct: 125 ENYQAFR 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.89
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.89
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.88
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.87
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.86
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.81
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.79
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.79
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.77
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.75
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.73
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.7
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.7
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.7
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.69
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.67
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.59
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.58
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.58
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.47
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.46

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=4.2e-27  Score=160.83  Aligned_cols=115  Identities=19%  Similarity=0.172  Sum_probs=108.4

Q ss_pred             hhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcC
Q psy8420           6 VTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCG   85 (199)
Q Consensus         6 ~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~g   85 (199)
                      .|||++|++.|+         .++++.|++.|++++.++..|.||||+|+..               ++.++++++++.|
T Consensus         3 ~tpL~~A~~~g~---------~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~---------------~~~~~~~~ll~~g   58 (118)
T d1myoa_           3 DKEFMWALKNGD---------LDEVKDYVAKGEDVNRTLEGGRKPLHYAADC---------------GQLEILEFLLLKG   58 (118)
T ss_dssp             HHHHHHHHHTTC---------HHHHHHHHTTTCCCCCCSSSSCCTTHHHHHH---------------STTTHHHHHHHSS
T ss_pred             ChHHHHHHHCCC---------HHHHHHHHHhhhccccccccccccccccccc---------------ccccccccccccc
Confidence            589999999999         9999999999999999999999999999999               8999999999999


Q ss_pred             CCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHHHHHH
Q psy8420          86 ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLIL  152 (199)
Q Consensus        86 a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~~~ll  152 (199)
                      ++++.+|..|+||||+|+..++.        +++++|+++|++++.+|..|.||||++..+.++.||
T Consensus        59 ~din~~d~~g~tpLh~A~~~~~~--------~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~~i~~LL  117 (118)
T d1myoa_          59 ADINAPDKHHITPLLSAVYEGHV--------SCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALL  117 (118)
T ss_dssp             CTTTCCSSSCSCHHHHHHTTTCC--------HHHHHHHTTCCCSSSSSSSTCCCCCTCSSTTTGGGG
T ss_pred             ceeeecccccccchhhhhhcCch--------hhhhhhhcccccceeeCCCCCCHHHHHhHHHHHHhc
Confidence            99999999999999999999999        999999999999999999999999997665555444

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.2e-25  Score=170.06  Aligned_cols=139  Identities=25%  Similarity=0.241  Sum_probs=96.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      |..|.||||+|+..|+         .++++.|++.|++++.+|..|.||||+|+..++ ++                   
T Consensus        42 ~~~g~TpL~~A~~~g~---------~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  112 (255)
T d1oy3d_          42 NDLGQTALHLAAILGE---------ASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY  112 (255)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----
T ss_pred             CCCCCCccchHHhhcc---------cccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhh
Confidence            3556677777777776         677777777777777777777777777776655 11                   


Q ss_pred             ---------------------------------------------CcccccccccCCcHHHHHHHHhcCCCCccC-CCCC
Q psy8420          62 ---------------------------------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAK-DYQG   95 (199)
Q Consensus        62 ---------------------------------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~-d~~g   95 (199)
                                                                   |.+|++.|+..++.+++++|+++|++++.. +..|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  192 (255)
T d1oy3d_         113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG  192 (255)
T ss_dssp             -------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC
T ss_pred             hhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccc
Confidence                                                         456667777777777777777777766653 4567


Q ss_pred             CcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420          96 NTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK  157 (199)
Q Consensus        96 ~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~  157 (199)
                      .||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.+++
T Consensus       193 ~TpL~~A~~~~~~--------~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         193 RTPLHLAVEAQAA--------SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             cccccccccccHH--------HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            7777777777777        77777777777777777777777776    445566666666554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.91  E-value=1.5e-24  Score=168.35  Aligned_cols=134  Identities=21%  Similarity=0.215  Sum_probs=118.4

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC---------------------
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV---------------------   61 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~---------------------   61 (199)
                      .+.|+|+.||..|+         .++++.|++.|+++|.+|..|.||||+|+..|+ ++                     
T Consensus        39 ~~~t~l~~A~~~G~---------~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~  109 (291)
T d1s70b_          39 DDGAVFLAACSSGD---------TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP  109 (291)
T ss_dssp             CHHHHHHHHHHHTC---------HHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCchHHHHHHHcCC---------HHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccc
Confidence            46689999999999         899999999999999999999999999998887 22                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy8420          62 --------------------------------------------------------------------------------   61 (199)
Q Consensus        62 --------------------------------------------------------------------------------   61 (199)
                                                                                                      
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccc
Confidence                                                                                            


Q ss_pred             ---------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCC
Q psy8420          62 ---------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV  132 (199)
Q Consensus        62 ---------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  132 (199)
                               +.+|++.++..++.+++++|++.|++++.++..|+||||+|+..|+.        +++++|+++|++++.+
T Consensus       190 ~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~--------~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE--------EACRILVENLCDMEAV  261 (291)
T ss_dssp             CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCC
T ss_pred             cccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCc
Confidence                     45777788888999999999999999999999999999999999999        9999999999999999


Q ss_pred             CCCCCCccccccchHHHHHHhh
Q psy8420         133 NNKGLTPIQATTTGVADLILRT  154 (199)
Q Consensus       133 ~~~g~tpl~~~~~~~~~~ll~~  154 (199)
                      |..|.||||++.+.++..|.+.
T Consensus       262 d~~G~TaL~~A~e~~~~~L~~~  283 (291)
T d1s70b_         262 NKVGQTAFDVADEDILGYLEEL  283 (291)
T ss_dssp             CTTSCCTTTSCCSGGGHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999777766666554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=145.75  Aligned_cols=116  Identities=21%  Similarity=0.251  Sum_probs=106.5

Q ss_pred             hHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCC
Q psy8420           7 TSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGA   86 (199)
Q Consensus         7 t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga   86 (199)
                      ++|+.||..|+         .++++.|+++|+++|.+|..|.||||+|+..               ++.+++++|++.|+
T Consensus         3 ~lL~~A~~~G~---------~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~---------------~~~~~~~~ll~~g~   58 (130)
T d1ycsb1           3 ALLLDSSLEGE---------FDLVQRIIYEVDDPSLPNDEGITALHNAVCA---------------GHTEIVKFLVQFGV   58 (130)
T ss_dssp             HHHHHHHHHTC---------HHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH---------------TCHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCC---------HHHHHHHHHcCCCcccccccccccccccccc---------------cccccccccccccc
Confidence            68999999999         9999999999999999999999999999999               99999999999999


Q ss_pred             CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCC-CCCCcccc------ccchHHHHHHhh
Q psy8420          87 DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN-KGLTPIQA------TTTGVADLILRT  154 (199)
Q Consensus        87 ~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~------~~~~~~~~ll~~  154 (199)
                      +++.+|.+|+||||+|+..++.        +++++|+++|++++..+. .|.||+++      ...+++++|+..
T Consensus        59 ~~~~~d~~g~tpLh~A~~~g~~--------~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          59 NVNAADSDGWTPLHCAASCNNV--------QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             ccccccccCcccccccchhhHH--------HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999999999999999        999999999999998875 58888765      235677777664

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.1e-24  Score=145.97  Aligned_cols=117  Identities=17%  Similarity=0.152  Sum_probs=106.3

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR   83 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~   83 (199)
                      .+.++||+|+..|+         .++++.|+++|++++.++..|.||+|.|+ .               ++.+++++|++
T Consensus         2 p~~~~L~~Aa~~G~---------~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~---------------g~~~~v~~Ll~   56 (125)
T d1bi7b_           2 PSADWLATAAARGR---------VEEVRALLEAGANPNAPNSYGRRPIQVMM-M---------------GSARVAELLLL   56 (125)
T ss_dssp             CSTTHHHHHHHHTC---------HHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T---------------TCHHHHHHHHT
T ss_pred             CChhHHHHHHHCCC---------HHHHHHHHHcCCccccccccccccccccc-c---------------ccccccccccc
Confidence            45789999999999         99999999999999999999999999664 5               79999999999


Q ss_pred             cCCCCccCCCCCC-cHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHh
Q psy8420          84 CGADVNAKDYQGN-TPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILR  153 (199)
Q Consensus        84 ~ga~v~~~d~~g~-tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~  153 (199)
                      +|++++.++..+. ||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|+.
T Consensus        57 ~ga~~~~~~~~~~~~~L~~A~~~g~~--------~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          57 HGAEPNCADPATLTRPVHDAAREGFL--------DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TTCCCCCCCTTTCCCHHHHHHHHTCH--------HHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccc--------cccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999998876 699999999999        99999999999999999999999998    45566666654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3e-23  Score=153.25  Aligned_cols=124  Identities=23%  Similarity=0.253  Sum_probs=112.5

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHH----HcCCCcccccCCCchHHHHHHhcCC-CC-----------------
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLV----FSLNKLSVASRQNQSLLHLCVNYET-PV-----------------   61 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll----~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------   61 (199)
                      +|.||||+||..|+         .++++.|+    +.|++++.+|..|.||||+|+..|+ ++                 
T Consensus         2 dG~TpLh~A~~~g~---------~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~   72 (228)
T d1k1aa_           2 DGDTPLHIAVVQGN---------LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH   72 (228)
T ss_dssp             TTCCHHHHHHHTTC---------HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCccHHHHHHHcCC---------HHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccc
Confidence            69999999999999         88887776    4799999999999999999999988 33                 


Q ss_pred             -----------------------------------------------------------------------Ccccccccc
Q psy8420          62 -----------------------------------------------------------------------DTFHTNDVC   70 (199)
Q Consensus        62 -----------------------------------------------------------------------~~~~l~~~~   70 (199)
                                                                                             +.++++.++
T Consensus        73 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~  152 (228)
T d1k1aa_          73 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  152 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             cccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHH
Confidence                                                                                   345566688


Q ss_pred             cCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccccc
Q psy8420          71 KFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATT  144 (199)
Q Consensus        71 ~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~  144 (199)
                      ..+...+++.++..|..++.+|..|.||||+|+..++.        +++++|+++|++++.+|..|.||||++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~--------~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         153 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL--------PLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             HhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCH--------HHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            88899999999999999999999999999999999999        9999999999999999999999999943

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-23  Score=157.29  Aligned_cols=136  Identities=21%  Similarity=0.241  Sum_probs=121.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      |..|.||||+|+..++         .++++.|++.|++++.+|..|.|||++++..+. .+                   
T Consensus        36 d~~g~TpLh~A~~~~~---------~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  106 (221)
T d1iknd_          36 NNLQQTPLHLAVITNQ---------PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA  106 (221)
T ss_dssp             CTTCCCHHHHHHHTTC---------HHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred             CCCCCccccccccccc---------cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence            6789999999999999         899999999999999999999999999998877 21                   


Q ss_pred             ----CcccccccccCCcHHHHHHHHhcCCCCccCC-CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCC
Q psy8420          62 ----DTFHTNDVCKFPCAATTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG  136 (199)
Q Consensus        62 ----~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d-~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g  136 (199)
                          +.+|++.++..++.+++++++..|+.++..+ .+|.||||+|+..++.        +++++|+++|+|++.+|.+|
T Consensus       107 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~--------~~v~~Ll~~gad~~~~~~~G  178 (221)
T d1iknd_         107 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP--------DLVSLLLKCGADVNRVTYQG  178 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH--------HHHHHHHTTTCCSCCCCTTC
T ss_pred             cccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH--------HHHHHHHhcCCcccccCCCC
Confidence                5678888999999999999999999998876 5799999999999999        99999999999999999999


Q ss_pred             CCcccc----ccchHHHHHHhh
Q psy8420         137 LTPIQA----TTTGVADLILRT  154 (199)
Q Consensus       137 ~tpl~~----~~~~~~~~ll~~  154 (199)
                      .||||+    ...++++.|++.
T Consensus       179 ~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         179 YSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             CCGGGGCTTSSCHHHHHHHHTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHc
Confidence            999999    355666666665

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.1e-23  Score=154.24  Aligned_cols=111  Identities=22%  Similarity=0.210  Sum_probs=82.5

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |+.|.||||+|+..++         .++++.|++.|++++.++..|.||||+|+..               +..+++++|
T Consensus       100 d~~g~tpL~~A~~~~~---------~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~---------------~~~~~~~~L  155 (223)
T d1uoha_         100 NQNGCTPLHYAASKNR---------HEIAVMLLEGGANPDAKDHYEATAMHRAAAK---------------GNLKMIHIL  155 (223)
T ss_dssp             CTTCCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             CCCCCchhhHHHHcCC---------HHHHHHHHHCCCCCCCcCCCCCccchhhhhc---------------CCcchhhhh
Confidence            3455555555555555         5555555555555555555555555555555               888888888


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccccc
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATT  144 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~  144 (199)
                      +..|.+++.+|..|+||||+|+..++.        +++++|++.|++++.+|..|+||||++.
T Consensus       156 ~~~~~~i~~~d~~g~TpL~~Aa~~g~~--------~~v~~LL~~Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         156 LYYKASTNIQDTEGNTPLHLACDEERV--------EEAKLLVSQGASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             HHTTCCSCCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCTTSCCHHHHCC
T ss_pred             ccccceeeeccCCCCceeccccccCcH--------HHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            888888888888889999998888888        8888888888988888888999988843

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.7e-23  Score=155.16  Aligned_cols=135  Identities=18%  Similarity=0.182  Sum_probs=84.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccc---ccCCCchHHHHHHhcCC-CC----------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV---ASRQNQSLLHLCVNYET-PV----------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~---~~~~g~t~L~~a~~~~~-~~----------------   61 (199)
                      |++|.||||+|+..|+         .++++.|++.|++++.   .+..|.+|+++++..+. ++                
T Consensus        31 d~~G~TpL~~A~~~g~---------~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (229)
T d1ixva_          31 DQDGRIPLHWSVSFQA---------HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI  101 (229)
T ss_dssp             CTTSCCHHHHHHHTTC---------HHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCC
T ss_pred             CCCCCCHHHHHHHcCC---------ccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            5778888888888888         7888888888888764   35567788888777665 22                


Q ss_pred             ---CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC-CCCCCCCCCCC
Q psy8420          62 ---DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG-AHMDTVNNKGL  137 (199)
Q Consensus        62 ---~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g-a~~~~~~~~g~  137 (199)
                         +.++++.++..+..+++++|+..|...+..|..|+||+|+++..++.        +++++|++.| .+++.+|..|.
T Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~--------~~~~~Ll~~~~~~in~~d~~g~  173 (229)
T d1ixva_         102 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL--------KLIELLCGLGKSAVNWQDKQGW  173 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH--------HHHHHHHTTTCCCSCCCCTTSC
T ss_pred             ccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccc--------cccccccccccccccccccccC
Confidence               22333444445555555555555555555555556666666555555        5555555554 34555555566


Q ss_pred             Ccccc----ccchHHHHHHh
Q psy8420         138 TPIQA----TTTGVADLILR  153 (199)
Q Consensus       138 tpl~~----~~~~~~~~ll~  153 (199)
                      ||||+    ...++++.|++
T Consensus       174 TpLh~A~~~~~~~~v~~Ll~  193 (229)
T d1ixva_         174 TPLFHALAEGHGDAAVLLVE  193 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH
T ss_pred             CchhhhcccccHHHHHHHHH
Confidence            66655    33445555554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.9e-23  Score=146.11  Aligned_cols=119  Identities=22%  Similarity=0.198  Sum_probs=108.6

Q ss_pred             hhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cccccc
Q psy8420           6 VTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTFHTN   67 (199)
Q Consensus         6 ~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~~l~   67 (199)
                      -||||.|++.|+         .++++.|+++|++++ .+..|.||||+|+..++ ++                 +.++++
T Consensus         3 ~t~L~~Aa~~g~---------~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (153)
T d1awcb_           3 GKKLLEAARAGQ---------DDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHTC---------HHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             CHHHHHHHHCCC---------HHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccc
Confidence            499999999999         999999999999887 68899999999999988 32                 234445


Q ss_pred             ccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        68 ~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      .++...+.+++++++..|++++.+|..|+||||+|+..++.        +++++|+++|++++.+|..|.||||+
T Consensus        73 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~--------~iv~~ll~~gad~~~~d~~g~Tpl~~  139 (153)
T d1awcb_          73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ--------EVVELLIKYGADVHTQSKFCKTAFDI  139 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccccccceeeecccccCCccccccccCchHHHhhhhcchh--------heeeeccccccCCcccCCCCCCHHHH
Confidence            56677899999999999999999999999999999999999        99999999999999999999999999

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.9e-23  Score=159.22  Aligned_cols=174  Identities=20%  Similarity=0.269  Sum_probs=135.0

Q ss_pred             CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCC---cccccCCCchHHHHHHhcCC-CC---------------
Q psy8420           1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNK---LSVASRQNQSLLHLCVNYET-PV---------------   61 (199)
Q Consensus         1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~---i~~~~~~g~t~L~~a~~~~~-~~---------------   61 (199)
                      .+++|.||||+|+..++         .++++.|++.|++   ++.++..|.||||+|+..|+ ++               
T Consensus         5 i~~~G~t~Lh~A~~~~~---------~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d   75 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQH---------EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE   75 (255)
T ss_dssp             CCTTCCCHHHHHHHTTC---------HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred             CCcCCCCHHHHHHHcCC---------HHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccc
Confidence            47899999999999999         9999999999887   66788899999999999988 33               


Q ss_pred             --CcccccccccCCcHHHHHHHHhcCCC-----------------------------------------------CccCC
Q psy8420          62 --DTFHTNDVCKFPCAATTKLLIRCGAD-----------------------------------------------VNAKD   92 (199)
Q Consensus        62 --~~~~l~~~~~~~~~~~~~~Ll~~ga~-----------------------------------------------v~~~d   92 (199)
                        |.+|++.|+..+..+++++|++.+..                                               ++.++
T Consensus        76 ~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d  155 (255)
T d1oy3d_          76 RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN  155 (255)
T ss_dssp             TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC
T ss_pred             cccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccccc
Confidence              57788888888888888888654321                                               24456


Q ss_pred             CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCC-CCCCCCcccc----ccchHHHHHHhhcccchhHHHHHHH
Q psy8420          93 YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV-NNKGLTPIQA----TTTGVADLILRTLTKINLKCLAAKV  167 (199)
Q Consensus        93 ~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~-~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~  167 (199)
                      ..|.||||+|+..++.        +++++|++.+++.+.. +..|.||||+    ...++++.|++.+++.......+..
T Consensus       156 ~~g~TpLh~A~~~~~~--------~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t  227 (255)
T d1oy3d_         156 YDGHTPLHVAVIHKDA--------EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT  227 (255)
T ss_dssp             TTSCCHHHHHHHTTCH--------HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccCccccccccccccc--------ccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCC
Confidence            7889999999999999        9999999999988764 6789999998    5677899999887665543322222


Q ss_pred             HhhccccCCCCCchhHHHHHHHhhhhh
Q psy8420         168 ITQNNITYKGLVPHDLESFIELHGTAL  194 (199)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~~~~~~~~  194 (199)
                      ...+.+...   ..++.++|..+|++-
T Consensus       228 ~L~~A~~~~---~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         228 PLGSALLRP---NPILARLLRAHGAPE  251 (255)
T ss_dssp             HHHHHHTSS---CHHHHHHHHHTTCCC
T ss_pred             HHHHHHHCC---CHHHHHHHHHcCCCC
Confidence            222222222   456778899999863

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=1.3e-22  Score=155.91  Aligned_cols=135  Identities=19%  Similarity=0.265  Sum_probs=120.5

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      |+.|.||||+|+..|+         .++++.|+++|++++.++..|.||+++|+..++ .+                   
T Consensus        71 d~~G~TpLh~A~~~g~---------~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  141 (277)
T d2fo1e1          71 DCDENTPLMLAVLARR---------RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  141 (277)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             CCCCCeeecccccccc---------ccccccccccccccccccccccccccchhhhcchhhhhhhhhccccccccccccc
Confidence            5789999999999999         999999999999999999999999999999887 22                   


Q ss_pred             ---------------------------------------------CcccccccccCCcHHHHHHHH-hcCCCCccCCCCC
Q psy8420          62 ---------------------------------------------DTFHTNDVCKFPCAATTKLLI-RCGADVNAKDYQG   95 (199)
Q Consensus        62 ---------------------------------------------~~~~l~~~~~~~~~~~~~~Ll-~~ga~v~~~d~~g   95 (199)
                                                                   +.++++.++..++.+++.+++ ..+.+++.+|..|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  221 (277)
T d2fo1e1         142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  221 (277)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             ccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCC
Confidence                                                         456777888888999888655 5789999999999


Q ss_pred             CcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHh
Q psy8420          96 NTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILR  153 (199)
Q Consensus        96 ~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~  153 (199)
                      +||||+|+..++.        +++++|+++|++++.+|..|.||||+    +..++++.|++
T Consensus       222 ~tpL~~A~~~g~~--------~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         222 KTPIMLAAQEGRI--------EVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCHHHHHHHHTCH--------HHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHcCCH--------HHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999        99999999999999999999999999    45566776654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=1.3e-22  Score=150.09  Aligned_cols=124  Identities=17%  Similarity=0.136  Sum_probs=111.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      |++|.||||+||..|+         .++++.|+..|++++.++..+.++++.++.... ..                   
T Consensus        20 d~~G~t~L~~A~~~g~---------~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (209)
T d1ot8a_          20 DKTGETSLHLAARFAR---------ADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDG   90 (209)
T ss_dssp             HHHCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999999         999999999999999999999999999887766 11                   


Q ss_pred             --------------------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcc
Q psy8420          62 --------------------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAI  109 (199)
Q Consensus        62 --------------------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~  109 (199)
                                                      +.++++.++..+...+++.++..+.+++..|..|.||||+|+..|+. 
T Consensus        91 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~-  169 (209)
T d1ot8a_          91 TTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY-  169 (209)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH-
T ss_pred             cccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHH-
Confidence                                            45677778888889999999999999999999999999999999999 


Q ss_pred             cchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420         110 SDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus       110 ~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                             +++++|+++|++++..|..|.||||+
T Consensus       170 -------~~v~~Ll~~gad~n~~d~~g~Tpl~~  195 (209)
T d1ot8a_         170 -------EASKALLDNFANREITDHMDRLPRDV  195 (209)
T ss_dssp             -------HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             -------HHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence                   99999999999999999999999998

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=6.6e-23  Score=160.82  Aligned_cols=125  Identities=21%  Similarity=0.211  Sum_probs=102.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC--CC------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET--PV------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~--~~------------------   61 (199)
                      |..|.||||+||..|+         .++++.|++.|++++.+|..|.||||.|+..++  +.                  
T Consensus       104 D~~G~T~LH~Aa~~g~---------~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIAN---------LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             STTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            7889999999999999         999999999999999999999999999998654  01                  


Q ss_pred             --Cccccccccc----CCcHHH--------HHHHHhcCCC-------------------------------------Ccc
Q psy8420          62 --DTFHTNDVCK----FPCAAT--------TKLLIRCGAD-------------------------------------VNA   90 (199)
Q Consensus        62 --~~~~l~~~~~----~~~~~~--------~~~Ll~~ga~-------------------------------------v~~   90 (199)
                        |++++|.++.    .+....        +.+++..+..                                     +|.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence              5567764332    122222        2233333221                                     688


Q ss_pred             CCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420          91 KDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT  143 (199)
Q Consensus        91 ~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~  143 (199)
                      +|..|+||||+|+..++.        +++++|+++|++++.+|..|.|||+++
T Consensus       255 ~D~~G~TpLh~A~~~g~~--------~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNI--------SIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCH--------HHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             CCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            899999999999999999        999999999999999999999999973

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-22  Score=142.86  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=88.1

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhc
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRC   84 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~   84 (199)
                      | ++||+||..|+         +++++.|+++|++++.+|..|.||||+|+ .               ++.+++++|+++
T Consensus         2 ~-~~Lh~Aa~~g~---------~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~---------------~~~ei~~~Ll~~   55 (156)
T d1ihba_           2 G-NELASAAARGD---------LEQLTSLLQNNVNVNAQNGFGRTALQVMK-L---------------GNPEIARRLLLR   55 (156)
T ss_dssp             H-HHHHHHHHHTC---------HHHHHHHTTSCCCTTCCCTTSCCHHHHCC-S---------------SCHHHHHHHHHT
T ss_pred             h-HHHHHHHHcCC---------HHHHHHHHHCCCCcCccCCcccccccccc-c---------------cccccccccccc
Confidence            5 89999999999         99999999999999999999999999875 5               466666666666


Q ss_pred             CCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhc
Q psy8420          85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTL  155 (199)
Q Consensus        85 ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~  155 (199)
                      |++++..+..+.++++.++..+..        ..+..|++.+.+++..+..|.+|+++    ...+.++.|++.+
T Consensus        56 ~a~~~~~~~~~~~~l~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  122 (156)
T d1ihba_          56 GANPDLKDRTGFAVIHDAARAGFL--------DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  122 (156)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccccccccCccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccc
Confidence            666666666666666666666666        66666666666666666666666665    3445555555553

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.5e-22  Score=148.22  Aligned_cols=109  Identities=25%  Similarity=0.219  Sum_probs=53.5

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |+.|+||||+|+..|+         .++++.++..+......+..+.++++.++..               ++.+++++|
T Consensus        34 D~~G~TpLh~Aa~~g~---------~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~~L   89 (223)
T d1uoha_          34 DQDSRTALHWACSAGH---------TEIVEFLLQLGVPVNDKDDAGWSPLHIAASA---------------GRDEIVKAL   89 (223)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH---------------TCHHHHHHH
T ss_pred             CCCCCCHHHHHHHhhh---------hcccccccccccccccccccccccccccccc---------------cccchhHHH
Confidence            4555666666666555         3333333333333333333333333333333               455555555


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      +++|++++.+|..|.||||+|+..++.        +++++|+++|++++.++..|.||||+
T Consensus        90 l~~~~d~~~~d~~g~tpL~~A~~~~~~--------e~~~~Ll~~g~d~~~~~~~~~t~L~~  142 (223)
T d1uoha_          90 LGKGAQVNAVNQNGCTPLHYAASKNRH--------EIAVMLLEGGANPDAKDHYEATAMHR  142 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             hccCceeEeeCCCCCchhhHHHHcCCH--------HHHHHHHHCCCCCCCcCCCCCccchh
Confidence            555555555555555555555555555        55555555555555555555555554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.7e-22  Score=140.57  Aligned_cols=131  Identities=19%  Similarity=0.254  Sum_probs=112.5

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCC--CC----------------Ccc
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYET--PV----------------DTF   64 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~--~~----------------~~~   64 (199)
                      +|.+ ||.|+..|+         .++++.|+.. +++++.+|..|.||||+|+. ++  .+                +.+
T Consensus         2 ~g~~-L~~Aa~~g~---------~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~   70 (156)
T d1bd8a_           2 AGDR-LSGAAARGD---------VQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTS   70 (156)
T ss_dssp             HHHH-HHHHHHHTC---------HHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CcHH-HHHHHHcCC---------HHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccc
Confidence            4555 999999999         9999999985 78999999999999999875 44  22                566


Q ss_pred             cccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc--
Q psy8420          65 HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA--  142 (199)
Q Consensus        65 ~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~--  142 (199)
                      |++.++..++.++++.++++|++++.+|..|.||||+|+..++.        +++++|+ .|++++.+|..|.||||+  
T Consensus        71 ~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~--------~i~~~L~-~~~~~~~~d~~G~TpL~~A~  141 (156)
T d1bd8a_          71 PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT--------AVVSFLA-AESDLHRRDARGLTPLELAL  141 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH--------HHHHHHH-TTSCTTCCCTTSCCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCCeeeccccccccc--------ccccccc-ccccccccCCCCCCHHHHHH
Confidence            77888888999999999999999999999999999999999999        9998777 689999999999999998  


Q ss_pred             --ccchHHHHHHhh
Q psy8420         143 --TTTGVADLILRT  154 (199)
Q Consensus       143 --~~~~~~~~ll~~  154 (199)
                        ...++++.|+++
T Consensus       142 ~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         142 QRGAQDLVDILQGH  155 (156)
T ss_dssp             HSCCHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHhh
Confidence              556777777764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=7.3e-21  Score=135.30  Aligned_cols=124  Identities=17%  Similarity=0.246  Sum_probs=103.6

Q ss_pred             hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccc------cCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420           5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVA------SRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT   78 (199)
Q Consensus         5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~------~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~   78 (199)
                      +.++||..+...+      ++++..+..++..|++++.+      +..|+||||+|+..            ...+..+++
T Consensus         3 ~~~~l~~L~~Av~------~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~------------~~~~~~~iv   64 (154)
T d1dcqa1           3 TAAKLHSLCEAVK------TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRS------------VDRTSLHIV   64 (154)
T ss_dssp             HHHHHHHHHHHHH------TTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHH------------CCTTTHHHH
T ss_pred             ChHHHHHHHHHHH------hCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHh------------cCCCCHHHH
Confidence            4456665444333      23388888889999887765      66899999999976            122688999


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420          79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT  154 (199)
Q Consensus        79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~  154 (199)
                      ++|+++|++++.+|..|+||||+|+..++.        +++++|+++|++++.+|..|.||||+    ...++++.|++.
T Consensus        65 ~~Ll~~gadin~~d~~g~TpLh~A~~~~~~--------~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          65 DFLVQNSGNLDKQTGKGSTALHYCCLTDNA--------ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHHHHCSCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCChhhhhhhhccccccccccccc--------cccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999        99999999999999999999999998    456678877776

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.7e-20  Score=133.39  Aligned_cols=98  Identities=23%  Similarity=0.202  Sum_probs=89.6

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.||||+|+..+.      .+..++++.|++.|++++.+|..|.||||+|+..               ++.+++++|
T Consensus        42 ~~~g~t~Lh~A~~~~~------~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~---------------~~~~~v~~L  100 (154)
T d1dcqa1          42 HEPDETALHLAVRSVD------RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT---------------DNAECLKLL  100 (154)
T ss_dssp             SSTTCBHHHHHHHHCC------TTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             CCCCCchHHHHHHhcC------CCCHHHHHHHHHcCCChhhhhhhhcccccccccc---------------ccccccccc
Confidence            4568999999998753      1228999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH  128 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~  128 (199)
                      +++|++++.+|..|.||||+|+..++.        +++++|++.++.
T Consensus       101 l~~gad~~~~d~~g~tpL~~A~~~~~~--------~i~~~L~~~~~~  139 (154)
T d1dcqa1         101 LRGKASIEIANESGETPLDIAKRLKHE--------HCEELLTQALSG  139 (154)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHHHTT
T ss_pred             cccCccccccCCCCCCHHHHHHHcCCH--------HHHHHHHHhCCC
Confidence            999999999999999999999999999        999999997654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=3.3e-20  Score=138.79  Aligned_cols=132  Identities=17%  Similarity=0.171  Sum_probs=103.6

Q ss_pred             hHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCC-CC--------------------Ccc
Q psy8420           7 TSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYET-PV--------------------DTF   64 (199)
Q Consensus         7 t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~-~~--------------------~~~   64 (199)
                      ||||+|+..|+         .+.++.|+.. +.+++.+|.+|.||||+|+..|+ ++                    +.+
T Consensus         2 ~pLh~A~~~g~---------~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~   72 (229)
T d1ixva_           2 YPLHQACMENE---------FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT   72 (229)
T ss_dssp             CHHHHHHHHTC---------HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCC
T ss_pred             HhHHHHHHcCC---------HHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccc
Confidence            79999999999         9999999884 68899999999999999999955 22                    223


Q ss_pred             cccccccCCcHHHHHHHHhcCCC--CccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420          65 HTNDVCKFPCAATTKLLIRCGAD--VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus        65 ~l~~~~~~~~~~~~~~Ll~~ga~--v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      +++.+...+..++++.++..+..  ....+..+.++++.++..++.        +++..|+..|.+.+..+..|.||||+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~g~t~l~~  144 (229)
T d1ixva_          73 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF--------EVSQFLIENGASVRIKDKFNQIPLHR  144 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchh--------hhhhhhhhhcccccccCCCCCCccch
Confidence            34444444555555555555443  233456778899999999999        99999999999999999999999998


Q ss_pred             ----ccchHHHHHHhhc
Q psy8420         143 ----TTTGVADLILRTL  155 (199)
Q Consensus       143 ----~~~~~~~~ll~~~  155 (199)
                          ...++++.|++.+
T Consensus       145 a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_         145 AASVGSLKLIELLCGLG  161 (229)
T ss_dssp             HHHHTCHHHHHHHHTTT
T ss_pred             hhhcccccccccccccc
Confidence                5567788888764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-19  Score=145.75  Aligned_cols=118  Identities=27%  Similarity=0.312  Sum_probs=95.8

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.|||+.++..++         .++++.|++.|++++..+..+.|||+.++..               +..++++++
T Consensus       261 ~~~g~~~l~~a~~~~~---------~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~---------------~~~~~~~~l  316 (408)
T d1n11a_         261 NKSGLTPLHLVAQEGH---------VPVADVLIKHGVMVDATTRMGYTPLHVASHY---------------GNIKLVKFL  316 (408)
T ss_dssp             CTTCCCHHHHHHHHTC---------HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHS---------------SCSHHHHHH
T ss_pred             cCCCCChhhhhhhcCc---------HHHHHHHHHCCCccccccccccccchhhccc---------------Ccceeeeee
Confidence            3456666666666666         6666666666666666666666666666666               899999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHH
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLI  151 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~l  151 (199)
                      ++.|+++|.+|..|.||||+|+..++.        +++++|+++||+++.+|.+|.||||+    ...++++.|
T Consensus       317 l~~g~~in~~d~~G~T~Lh~A~~~g~~--------~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         317 LQHQADVNAKTKLGYSPLHQAAQQGHT--------DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999        99999999999999999999999999    334455433

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.8e-19  Score=136.16  Aligned_cols=131  Identities=18%  Similarity=0.176  Sum_probs=115.0

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      +..|.||||+|++.+.         .++++.|+.+ |++++.++..|.+++..+...           +...+..+++++
T Consensus       145 ~~~g~t~L~~A~~~~~---------~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~~~  204 (285)
T d1wdya_         145 RKGGATALMDAAEKGH---------VEVLKILLDEMGADVNACDNMGRNALIHALLS-----------SDDSDVEAITHL  204 (285)
T ss_dssp             TCCCCCHHHHHHHHTC---------HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHC-----------SCTTTHHHHHHH
T ss_pred             cccCchHHHHHHHcCC---------HHHHHHHHhccCCCcccccCCCCccccccccc-----------ccchHHHHHHHH
Confidence            4578999999999999         8999999975 899999999999988877665           222356679999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc-CCCCCCCCCCCCCcccc----ccchHHHHHHhhc
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN-GAHMDTVNNKGLTPIQA----TTTGVADLILRTL  155 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~-ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~  155 (199)
                      |+++|++++.++..|.||||+|+..++.        +++++|++. |++++.+|..|.||||+    ...++++.|++.|
T Consensus       205 Li~~ga~~n~~~~~g~t~L~~a~~~~~~--------~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         205 LLDHGADVNVRGERGKTPLILAVEKKHL--------GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             HHHTTCCSSCCCTTSCCHHHHHHHTTCH--------HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHCCCCCCccCCCCCCccchhhhcCcH--------HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999999999999999999        999999974 99999999999999998    6678889999988


Q ss_pred             ccchh
Q psy8420         156 TKINL  160 (199)
Q Consensus       156 ~~~~~  160 (199)
                      ++...
T Consensus       277 Ad~n~  281 (285)
T d1wdya_         277 ASTDC  281 (285)
T ss_dssp             SCSCC
T ss_pred             CCCCc
Confidence            87554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.8e-19  Score=137.46  Aligned_cols=177  Identities=18%  Similarity=0.155  Sum_probs=127.9

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC-CCchHHHHHHhcCC-CC--------------------
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR-QNQSLLHLCVNYET-PV--------------------   61 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~-~g~t~L~~a~~~~~-~~--------------------   61 (199)
                      .+.|+||.|++.|+         .++++.|++.|+++|.++. .|.||||+|+..|+ ++                    
T Consensus         4 ~~~~~L~~Ai~~~~---------~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~   74 (285)
T d1wdya_           4 EDNHLLIKAVQNED---------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCcHHHHHHHHcCC---------HHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccch
Confidence            46799999999999         9999999999999997765 79999999999988 33                    


Q ss_pred             -------------------------------------------------------------------------Ccccccc
Q psy8420          62 -------------------------------------------------------------------------DTFHTND   68 (199)
Q Consensus        62 -------------------------------------------------------------------------~~~~l~~   68 (199)
                                                                                               +.+|++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T d1wdya_          75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             hhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHH
Confidence                                                                                     4566777


Q ss_pred             cccCCcHHHHHHHHhc-CCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----c
Q psy8420          69 VCKFPCAATTKLLIRC-GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----T  143 (199)
Q Consensus        69 ~~~~~~~~~~~~Ll~~-ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~  143 (199)
                      |+..++.+++++|++. |++++..+..|.++...+......    .....++++|+++|++++.++..|.||||.    .
T Consensus       155 A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~  230 (285)
T d1wdya_         155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD----SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK  230 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT----TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccc----hHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcC
Confidence            7888888888888864 788888888888877766543322    122268888899999999999999999988    4


Q ss_pred             cchHHHHHHhh-cccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420         144 TTGVADLILRT-LTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDK  196 (199)
Q Consensus       144 ~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  196 (199)
                      ..++++.|++. +.+.......++......+.+   -..++.++|..+|++++-
T Consensus       231 ~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~---~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         231 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL---KLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHSSCSCC
T ss_pred             cHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCc
Confidence            56677778764 433322111111111111111   145678899999999874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=2.5e-19  Score=137.20  Aligned_cols=90  Identities=14%  Similarity=0.055  Sum_probs=73.5

Q ss_pred             cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420           3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI   82 (199)
Q Consensus         3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll   82 (199)
                      +.|.||||+|+..|+... ...--....+.++..|++||.+|..|.||||+|+..               ++.+++++|+
T Consensus        31 ~~g~T~Lh~A~~~g~~~~-v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~---------------g~~~iv~~Ll   94 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEK-SEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA---------------RRRRLVAYLM   94 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSC-CTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHHH
T ss_pred             CCCccHHHHHHHcCCHHH-HHHHHhcchhHHHHcCCCccccCCCCCeeecccccc---------------cccccccccc
Confidence            469999999999998211 000011233556788999999999999999999999               9999999999


Q ss_pred             hcCCCCccCCCCCCcHHHHHHhccCc
Q psy8420          83 RCGADVNAKDYQGNTPLHIIATYERA  108 (199)
Q Consensus        83 ~~ga~v~~~d~~g~tpl~~a~~~~~~  108 (199)
                      ++|++++.+|.+|.||++++...++.
T Consensus        95 ~~Gad~n~~~~~g~t~l~~a~~~~~~  120 (277)
T d2fo1e1          95 KAGADPTIYNKSERSALHQAAANRDF  120 (277)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccccccccccchhhhcch
Confidence            99999999999999999999876654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.2e-19  Score=141.19  Aligned_cols=124  Identities=19%  Similarity=0.206  Sum_probs=109.9

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-------------------   61 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------   61 (199)
                      |.+|.||||+|+..|+         .++++.|+++|++++.++..|.||||+|+..|+ ++                   
T Consensus        30 d~~g~TpL~~A~~~g~---------~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~  100 (408)
T d1n11a_          30 NVKVETPLHMAARAGH---------TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH  100 (408)
T ss_dssp             SSCCCCHHHHHHHHTC---------HHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccccccc
Confidence            5778999999999998         899999999999999999999999999988876 22                   


Q ss_pred             -------------------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCccc
Q psy8420          62 -------------------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAIS  110 (199)
Q Consensus        62 -------------------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~  110 (199)
                                                     +.+++..++..++.++++.|+++|++++..+..|.+||++|+..++.  
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~--  178 (408)
T d1n11a_         101 TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL--  178 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCH--
T ss_pred             chhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCH--
Confidence                                           23345557777889999999999999999999999999999999999  


Q ss_pred             chhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420         111 DFQTLHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus       111 ~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                            +++++|+.+|++++..+..|.||++.
T Consensus       179 ------~~~~~Ll~~g~~~~~~~~~~~t~l~~  204 (408)
T d1n11a_         179 ------DIVKLLLPRGGSPHSPAWNGYTPLHI  204 (408)
T ss_dssp             ------HHHHHHGGGTCCSCCCCTTCCCHHHH
T ss_pred             ------HHHHHHHhcCCcccccCCCCCCcchh
Confidence                  99999999999999999999999988

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.7e-19  Score=133.58  Aligned_cols=145  Identities=21%  Similarity=0.236  Sum_probs=109.1

Q ss_pred             chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cccc
Q psy8420           4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTFH   65 (199)
Q Consensus         4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~~   65 (199)
                      +|.||||+|+..|.....     .++++.+...|+++|.+|..|+||||+|+..++ .+                 |.+|
T Consensus         1 dG~t~Lh~A~~~g~~~~~-----~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~   75 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALT-----MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   75 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSS-----SCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CCChHHHHHHHcCCHHHH-----HHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccc
Confidence            589999999999982111     245667778899999999999999999999977 22                 5677


Q ss_pred             ccccccCCcHHHHHHHHhcCCCCc------cCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCC-CCCCC
Q psy8420          66 TNDVCKFPCAATTKLLIRCGADVN------AKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN-NKGLT  138 (199)
Q Consensus        66 l~~~~~~~~~~~~~~Ll~~ga~v~------~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~-~~g~t  138 (199)
                      ++.++..+..++++.++..+....      .....|.||+|.++..+..        +++.+|+..|++++..+ .+|.|
T Consensus        76 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~--------~~~~~l~~~~~~~~~~~~~~G~T  147 (221)
T d1iknd_          76 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL--------GIVELLVSLGADVNAQEPCNGRT  147 (221)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH--------HHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             cccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCCh--------hheeeecccCcccccccccCCCC
Confidence            777877788888888887765432      2344578888888888888        88899999998887765 57999


Q ss_pred             cccc----ccchHHHHHHhhcccchhH
Q psy8420         139 PIQA----TTTGVADLILRTLTKINLK  161 (199)
Q Consensus       139 pl~~----~~~~~~~~ll~~~~~~~~~  161 (199)
                      |||+    ...++++.|++.+++....
T Consensus       148 ~L~~A~~~g~~~~v~~Ll~~gad~~~~  174 (221)
T d1iknd_         148 ALHLAVDLQNPDLVSLLLKCGADVNRV  174 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCSCCC
T ss_pred             ccccccccccHHHHHHHHhcCCccccc
Confidence            9998    6677888999887776554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.73  E-value=8.4e-20  Score=145.70  Aligned_cols=123  Identities=11%  Similarity=-0.004  Sum_probs=100.7

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHH---HHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRI---YKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT   78 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~---~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~   78 (199)
                      +..|.||||+||..|+         .+++   +.|+..|+++|.++..|.||||+|+..               |+.+++
T Consensus        87 ~~~~~t~L~~Aa~~g~---------~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~---------------G~~~~v  142 (346)
T d2ajaa1          87 GIKSEVICFVAAITGC---------SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN---------------GHLHVL  142 (346)
T ss_dssp             TCCHHHHHHHHHHHCC---------HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT---------------TCHHHH
T ss_pred             cCCCCcHHHHHHHhCC---------HHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC---------------CCHHHH
Confidence            3578999999999999         5554   457889999999999999999999999               999999


Q ss_pred             HHHHhcCCCCccCC--CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCC---CCCCCCCCcccc----ccchHHH
Q psy8420          79 KLLIRCGADVNAKD--YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMD---TVNNKGLTPIQA----TTTGVAD  149 (199)
Q Consensus        79 ~~Ll~~ga~v~~~d--~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~---~~~~~g~tpl~~----~~~~~~~  149 (199)
                      ++|++.|++++..+  ..|+||||+|+..|+.        +++++|++.|++..   ..+..|.||++.    +..++++
T Consensus       143 ~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~--------~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~  214 (346)
T d2ajaa1         143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHL--------HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN  214 (346)
T ss_dssp             HHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCH--------HHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             HHHHHcCCCccccccccCCCChhHHHHHHhhH--------HHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHH
Confidence            99999999998876  4589999999999999        99999999998653   334556677776    4567888


Q ss_pred             HHHhhcc
Q psy8420         150 LILRTLT  156 (199)
Q Consensus       150 ~ll~~~~  156 (199)
                      .|++.++
T Consensus       215 ~Ll~~ga  221 (346)
T d2ajaa1         215 FLLDCPV  221 (346)
T ss_dssp             HHTTSHH
T ss_pred             HHHhCCC
Confidence            8888754

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-17  Score=115.35  Aligned_cols=93  Identities=19%  Similarity=0.061  Sum_probs=84.1

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      |++|+||||+|+..++         .++++.|++.|++++.+|.+|.||||+|+..               ++.+++++|
T Consensus        31 d~~g~t~Lh~A~~~~~---------~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~---------------g~~~~v~~L   86 (130)
T d1ycsb1          31 NDEGITALHNAVCAGH---------TEIVKFLVQFGVNVNAADSDGWTPLHCAASC---------------NNVQVCKFL   86 (130)
T ss_dssp             CTTSCCHHHHHHHHTC---------HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             cccccccccccccccc---------ccccccccccccccccccccCcccccccchh---------------hHHHHHHHH
Confidence            6789999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCC-CCCcHHHHH--HhccCcccchhhHHHHHHHHHHcC
Q psy8420          82 IRCGADVNAKDY-QGNTPLHII--ATYERAISDFQTLHTIILDLTENG  126 (199)
Q Consensus        82 l~~ga~v~~~d~-~g~tpl~~a--~~~~~~~~~~~~~~~~~~~Ll~~g  126 (199)
                      +++|++++..+. .+.||++++  ...|+.        +++++|+..+
T Consensus        87 l~~ga~v~~~~~~~~~~~~~~~~a~~~g~~--------eiv~~L~~~~  126 (130)
T d1ycsb1          87 VESGAAVFAMTYSDMQTAADKCEEMEEGYT--------QCSQFLYGVQ  126 (130)
T ss_dssp             HHTTCCTTCCCSSSCCCHHHHCCSSSTTCC--------CHHHHHHHHH
T ss_pred             HHcCCCcccccCCCCCCHHHHHHHHHcChH--------HHHHHHHhHH
Confidence            999999998875 588887765  456778        9999998753

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.9e-18  Score=118.15  Aligned_cols=107  Identities=15%  Similarity=0.182  Sum_probs=97.5

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+ .++         .++++.|++.|++++.++..+.++++.++..+. ..                 +.
T Consensus        31 d~~g~TpL~~A~-~~~---------~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  100 (156)
T d1ihba_          31 NGFGRTALQVMK-LGN---------PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN  100 (156)
T ss_dssp             CTTSCCHHHHCC-SSC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCcccccccccc-ccc---------ccccccccccccccccccccCcccccccccccccccccccccccccccccccccc
Confidence            678999999886 677         899999999999999999999999999999888 11                 67


Q ss_pred             ccccccccCCcHHHHHHHHhcCC-CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGA-DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG  126 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga-~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g  126 (199)
                      ++++.|+..+..+++++|+++|+ +++.+|..|.||||+|+..++.        +++++|+++|
T Consensus       101 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~--------~iv~~Ll~~G  156 (156)
T d1ihba_         101 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN--------EVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCH--------HHHHHHHhcC
Confidence            78888999999999999999876 8999999999999999999999        9999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.9e-18  Score=119.13  Aligned_cols=105  Identities=14%  Similarity=0.107  Sum_probs=92.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT   63 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~   63 (199)
                      |..|.||||+|+. ++         .++++.|+..+.+++.++..|.+|++.++..++ ++                 +.
T Consensus        33 d~~g~t~L~~A~~-~~---------~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~  102 (156)
T d1bd8a_          33 NRFGKTALQVMMF-GS---------TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA  102 (156)
T ss_dssp             CTTSCCHHHHSCT-TC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred             CCCCCcccccccc-cc---------cccccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            6778999998864 66         788899999999999988899999999988877 22                 67


Q ss_pred             ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc
Q psy8420          64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN  125 (199)
Q Consensus        64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~  125 (199)
                      +|++.|+..++.+++++|+ .|++++.+|.+|.||||+|+..++.        +++++|+++
T Consensus       103 t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~--------~iv~~Ll~h  155 (156)
T d1bd8a_         103 LPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQ--------DLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCH--------HHHHHHHTT
T ss_pred             eeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCH--------HHHHHHHhh
Confidence            8888899999999999887 7899999999999999999999999        999999864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1.6e-17  Score=112.48  Aligned_cols=90  Identities=20%  Similarity=0.242  Sum_probs=83.5

Q ss_pred             chHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCC
Q psy8420          48 QSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA  127 (199)
Q Consensus        48 ~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga  127 (199)
                      .|||++|+..               |+.+++++|+++|++++.+|..|+||+|+|+..++.        +++++|+++|+
T Consensus         3 ~tpL~~A~~~---------------g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~--------~~~~~ll~~g~   59 (118)
T d1myoa_           3 DKEFMWALKN---------------GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQL--------EILEFLLLKGA   59 (118)
T ss_dssp             HHHHHHHHHT---------------TCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTT--------THHHHHHHSSC
T ss_pred             ChHHHHHHHC---------------CCHHHHHHHHHhhhcccccccccccccccccccccc--------ccccccccccc
Confidence            4789999888               999999999999999999999999999999999999        99999999999


Q ss_pred             CCCCCCCCCCCcccc----ccchHHHHHHhhcccchh
Q psy8420         128 HMDTVNNKGLTPIQA----TTTGVADLILRTLTKINL  160 (199)
Q Consensus       128 ~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~  160 (199)
                      +++.+|..|.||||+    ...++++.|++.+++...
T Consensus        60 din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~   96 (118)
T d1myoa_          60 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV   96 (118)
T ss_dssp             TTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSS
T ss_pred             eeeecccccccchhhhhhcCchhhhhhhhccccccee
Confidence            999999999999999    567889999998777554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.4e-18  Score=115.64  Aligned_cols=90  Identities=13%  Similarity=0.127  Sum_probs=83.3

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCc-hHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQ-SLLHLCVNYETPVDTFHTNDVCKFPCAATTKL   80 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~-t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (199)
                      |..|.||||+|+ .|+         .++++.|++.|++++.++..+. +|||+|+..               ++.+++++
T Consensus        33 ~~~g~t~l~~a~-~g~---------~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~---------------g~~~~v~~   87 (125)
T d1bi7b_          33 NSYGRRPIQVMM-MGS---------ARVAELLLLHGAEPNCADPATLTRPVHDAARE---------------GFLDTLVV   87 (125)
T ss_dssp             CSSSCCTTTSSC-TTC---------HHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH---------------TCHHHHHH
T ss_pred             cccccccccccc-ccc---------cccccccccccccccccccccccccccccccc---------------cccccccc
Confidence            578999999775 677         8999999999999999988765 699999999               99999999


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHH
Q psy8420          81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTE  124 (199)
Q Consensus        81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~  124 (199)
                      |+++|++++.+|..|+||+|+|+..|+.        +++++|++
T Consensus        88 Ll~~ga~~~~~d~~G~T~l~~A~~~g~~--------~~v~~Lls  123 (125)
T d1bi7b_          88 LHRAGARLDVRDAWGRLPVDLAEELGHR--------DVARYLRA  123 (125)
T ss_dssp             HHHHTCCSSCCCTTCCCHHHHHHHHTCH--------HHHHHHSS
T ss_pred             ccccccccccccCCCCCHHHHHHHcCCH--------HHHHHHHh
Confidence            9999999999999999999999999999        99999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.6e-16  Score=116.71  Aligned_cols=89  Identities=13%  Similarity=0.112  Sum_probs=84.5

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.|||+.++..+.         ..+++.++..+.+++.+|..|.||||+|+..               ++.+++++|
T Consensus       120 ~~~~~t~l~~~~~~~~---------~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~---------------g~~~~v~~L  175 (209)
T d1ot8a_         120 DNSGKTALHWAAAVNN---------TEAVNILLMHHANRDAQDDKDETPLFLAARE---------------GSYEASKAL  175 (209)
T ss_dssp             CTTSCBHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             CCCCCCcchhhcccCc---------ceeeeeeccccccccccccccccccchhccc---------------cHHHHHHHH
Confidence            4678899999999998         8999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHH
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDL  122 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~L  122 (199)
                      +++|++++.+|..|+||||+|+..++.        +++++|
T Consensus       176 l~~gad~n~~d~~g~Tpl~~A~~~~~~--------~iv~lL  208 (209)
T d1ot8a_         176 LDNFANREITDHMDRLPRDVASERLHH--------DIVRLL  208 (209)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHH
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCCH--------HHHhhc
Confidence            999999999999999999999999999        999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.59  E-value=2.2e-17  Score=131.50  Aligned_cols=108  Identities=7%  Similarity=-0.104  Sum_probs=91.4

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc--CCCchHHHHHHhcCCCCCcccccccccCCcHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS--RQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTK   79 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~--~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~   79 (199)
                      |+.|+||||+||..|+         .++++.|++.|++++..+  ..|.||||+|+..               |+.++++
T Consensus       123 ~~~g~taL~~Aa~~G~---------~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~---------------g~~~iv~  178 (346)
T d2ajaa1         123 QAENYQAFRLAAENGH---------LHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN---------------GHLHVLN  178 (346)
T ss_dssp             CHHHHHHHHHHHHTTC---------HHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHT---------------TCHHHHH
T ss_pred             CCCCCCHHHHHHHCCC---------HHHHHHHHHcCCCccccccccCCCChhHHHHHH---------------hhHHHHH
Confidence            6789999999999999         999999999999998876  4699999999999               9999999


Q ss_pred             HHHhcCCCCc---cCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccc
Q psy8420          80 LLIRCGADVN---AKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ  141 (199)
Q Consensus        80 ~Ll~~ga~v~---~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  141 (199)
                      +|++.|++..   ..+..+.||++.|+..|+.        +++++|++.|++++..+..+.++.+
T Consensus       179 ~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~--------~iv~~Ll~~ga~~~~~~~~~~~~~~  235 (346)
T d2ajaa1         179 RLCELAPTEATAMIQAENYYAFRWAAVGRGHH--------NVINFLLDCPVMLAYAEIHEFEYGE  235 (346)
T ss_dssp             HHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH--------HHHHHHTTSHHHHHHHHHCTTTTTT
T ss_pred             HHHHcCCcccccccccCCCcchhhHHhhcCHH--------HHHHHHHhCCCCcchHHHHHHHcCc
Confidence            9999998653   3345567788888899999        9999999999887665555554444

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=5.2e-15  Score=103.54  Aligned_cols=98  Identities=17%  Similarity=0.105  Sum_probs=74.3

Q ss_pred             ccchhhHHHHHHHHhhccc------------------------cCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhc
Q psy8420           2 EDNLVTSLYLLVILTKVIK------------------------NISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNY   57 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~------------------------~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~   57 (199)
                      |..|+||||+|+..+++..                        .......+.++.++..|++++.++..|.||||+|+..
T Consensus        31 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~  110 (153)
T d1awcb_          31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH  110 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhc
Confidence            5678899999888877200                        0111223445555566666666666666666666666


Q ss_pred             CCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHH
Q psy8420          58 ETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDL  122 (199)
Q Consensus        58 ~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~L  122 (199)
                                     ++.+++++|++.|++++.+|..|.||||+|+..|+.        +++++|
T Consensus       111 ---------------g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~--------eiv~lL  152 (153)
T d1awcb_         111 ---------------NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE--------DLAEIL  152 (153)
T ss_dssp             ---------------TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHH
T ss_pred             ---------------chhheeeeccccccCCcccCCCCCCHHHHHHHcCCH--------HHHHhC
Confidence                           999999999999999999999999999999999999        999876

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.58  E-value=3.4e-16  Score=120.62  Aligned_cols=79  Identities=13%  Similarity=0.131  Sum_probs=75.5

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.||||+|+..+.         .++++.|+..|++++.++..|.||||+|+..               ++.+++++|
T Consensus       196 ~~~g~t~L~~a~~~~~---------~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~---------------g~~~iv~lL  251 (291)
T d1s70b_         196 AKSGGTALHVAAAKGY---------TEVLKLLIQARYDVNIKDYDGWTPLHAAAHW---------------GKEEACRIL  251 (291)
T ss_dssp             TTTCCCHHHHHHHHTC---------HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT---------------TCHHHHHHH
T ss_pred             cCCCCChhhHHHHcCC---------hhhhcccccceecccccccCCCCHHHHHHHc---------------CCHHHHHHH
Confidence            4678999999999999         9999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHh
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIAT  104 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~  104 (199)
                      +++|++++.+|..|.||||+|+.
T Consensus       252 l~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         252 VENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999964

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=7.5e-14  Score=108.54  Aligned_cols=88  Identities=15%  Similarity=0.115  Sum_probs=66.4

Q ss_pred             cCCCcccc-cCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhh
Q psy8420          36 SLNKLSVA-SRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQT  114 (199)
Q Consensus        36 ~g~~i~~~-~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~  114 (199)
                      .+.++|.+ |..|.||||+|+..               ++.+++++|+++|++++.+|..|+||||.|+..++.. +...
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~---------------g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~-~~~~  158 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSI---------------ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY-DSGT  158 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHT---------------TCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH-HTTC
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHc---------------CCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccch-hhhh
Confidence            46788866 88999999999999               9999999999999999999999999999999765310 0111


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420         115 LHTIILDLTENGAHMDTVNNKGLTPIQA  142 (199)
Q Consensus       115 ~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  142 (199)
                      +.+++++|   +..+..+|..|+||||.
T Consensus       159 ~~~ll~~l---~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         159 FEALLDYL---YPCLILEDSMNRTILHH  183 (301)
T ss_dssp             HHHHHHHH---GGGGGEECTTCCCHHHH
T ss_pred             HHHHHHHH---hhhhhhcccccCCHHHH
Confidence            11333333   23456667778888774

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.6e-14  Score=105.47  Aligned_cols=83  Identities=18%  Similarity=0.134  Sum_probs=78.2

Q ss_pred             ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420           2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL   81 (199)
Q Consensus         2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L   81 (199)
                      +..|.++|+.|+..+.         ..+++.++..|.+++.++..|.||||+|+..               ++.+++++|
T Consensus       141 ~~~~~~~l~~a~~~~~---------~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~---------------g~~~~v~~L  196 (228)
T d1k1aa_         141 IKSGRSPLIHAVENNS---------LSMVQLLLQHGANVNAQMYSGSSALHSASGR---------------GLLPLVRTL  196 (228)
T ss_dssp             TTTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH---------------TCHHHHHHH
T ss_pred             ccchhhHHHHHHHhhh---------hhhhhhhhhhccccccccccCcchHHHHHHc---------------CCHHHHHHH
Confidence            3568899999999998         8999999999999999999999999999999               999999999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHhccCc
Q psy8420          82 IRCGADVNAKDYQGNTPLHIIATYERA  108 (199)
Q Consensus        82 l~~ga~v~~~d~~g~tpl~~a~~~~~~  108 (199)
                      +++|++++.+|..|.||||+|+..++.
T Consensus       197 l~~Gad~n~~d~~G~TpL~~A~~~~~~  223 (228)
T d1k1aa_         197 VRSGADSSLKNCHNDTPLMVARSRRVI  223 (228)
T ss_dssp             HHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHhCCCc
Confidence            999999999999999999999988877