Psyllid ID: psy845
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | 2.2.26 [Sep-21-2011] | |||||||
| O15440 | 1437 | Multidrug resistance-asso | yes | N/A | 0.515 | 0.242 | 0.426 | 3e-85 | |
| Q9R1X5 | 1436 | Multidrug resistance-asso | yes | N/A | 0.515 | 0.243 | 0.426 | 6e-85 | |
| Q9QYM0 | 1436 | Multidrug resistance-asso | yes | N/A | 0.515 | 0.243 | 0.426 | 1e-84 | |
| Q80WJ6 | 1366 | Multidrug resistance-asso | no | N/A | 0.571 | 0.283 | 0.349 | 2e-68 | |
| Q6Y306 | 1366 | Multidrug resistance-asso | no | N/A | 0.571 | 0.283 | 0.351 | 3e-67 | |
| Q63120 | 1541 | Canalicular multispecific | no | N/A | 0.573 | 0.251 | 0.326 | 4e-61 | |
| O88563 | 1522 | Canalicular multispecific | no | N/A | 0.522 | 0.232 | 0.338 | 5e-61 | |
| B2RX12 | 1523 | Canalicular multispecific | no | N/A | 0.496 | 0.220 | 0.338 | 1e-59 | |
| Q96J65 | 1359 | Multidrug resistance-asso | no | N/A | 0.556 | 0.277 | 0.326 | 7e-59 | |
| Q6UR05 | 1531 | Multidrug resistance-asso | no | N/A | 0.518 | 0.229 | 0.335 | 7e-59 |
| >sp|O15440|MRP5_HUMAN Multidrug resistance-associated protein 5 OS=Homo sapiens GN=ABCC5 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 317 bits (811), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 180/422 (42%), Positives = 251/422 (59%), Gaps = 73/422 (17%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PL+I+ ++ H++S+V +RELKR++N+++SP
Sbjct: 995 QNVILVFFCVGMIAGVFPWFLVAVGPLVILFSVLHIVSRVL---IRELKRLDNITQSPFL 1051
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D+N FL + AMRWLAVR+D+++ IA+
Sbjct: 1052 SHITSSIQGLATIHAYNKGQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLIS-IALI 1110
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + PA AGLA++YA +TGL QFTVR+ ETE F +VERIN+ K L
Sbjct: 1111 TTTGLMIVLMHGQIPPAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTL 1170
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K DWP++G + F+N +RYR+N PLVL VSF I E IGI
Sbjct: 1171 SLEAPARIKN-----KAPSPDWPQEGEVTFENAEMRYRENLPLVLKKVSFTIKPKEKIGI 1225
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529
VGRTG+GKSSL +ALFRLVELS G IKID I+ + L LRS+LS+IPQ+PVLF+G
Sbjct: 1226 VGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISDIGLADLRSKLSIIPQEPVLFSG--- 1282
Query: 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589
T+RS L
Sbjct: 1283 -------------------------------------TVRSNL----------------- 1288
Query: 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647
DPF + + ++WDALE++H+K + + KL+S+V GD S+GE+QLLC+ARALLR
Sbjct: 1289 -DPFNQYTEDQIWDALERTHMKECIAQLPLKLESEVMENGDNFSVGERQLLCIARALLRH 1347
Query: 648 TK 649
K
Sbjct: 1348 CK 1349
|
Acts as a multispecific organic anion pump which can transport nucleotide analogs. Homo sapiens (taxid: 9606) |
| >sp|Q9R1X5|MRP5_MOUSE Multidrug resistance-associated protein 5 OS=Mus musculus GN=Abcc5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 315 bits (808), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 180/422 (42%), Positives = 250/422 (59%), Gaps = 73/422 (17%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PLLI+ +L H++S+V +RELKR++N+++SP
Sbjct: 994 QNVILVFFCVGMIAGVFPWFLVAVGPLLILFSLLHIVSRVL---IRELKRLDNITQSPFL 1050
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D+N FL + AMRWLAVR+D+++ IA+
Sbjct: 1051 SHITSSIQGLATIHAYNKRQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLIS-IALI 1109
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + A AGLA++YA +TGL QFTVR+ ETE F +VERIN+ K L
Sbjct: 1110 TTTGLMIVLMHGQIPSAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTL 1169
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K DWP++G + F+N +RYR+N PLVL VSF I E IGI
Sbjct: 1170 SLEAPARIKN-----KAPPHDWPQEGEVTFENAEMRYRENLPLVLKKVSFTIKPKEKIGI 1224
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529
VGRTG+GKSSL +ALFRLVELS G IKID I+ + L LRS+L++IPQ+PVLF+G
Sbjct: 1225 VGRTGSGKSSLGMALFRLVELSGGCIKIDGIRISDIGLADLRSKLAIIPQEPVLFSG--- 1281
Query: 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589
T+RS L
Sbjct: 1282 -------------------------------------TVRSNL----------------- 1287
Query: 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647
DPF + + ++WDALE++H+K + + KL+S+V GD S+GE+QLLC+ARALLR
Sbjct: 1288 -DPFNQYTEDQIWDALERTHMKECIAQLPLKLESEVMENGDNFSVGERQLLCIARALLRH 1346
Query: 648 TK 649
K
Sbjct: 1347 CK 1348
|
Acts as a multispecific organic anion pump which can transport nucleotide analogs. Mus musculus (taxid: 10090) |
| >sp|Q9QYM0|MRP5_RAT Multidrug resistance-associated protein 5 OS=Rattus norvegicus GN=Abcc5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 180/422 (42%), Positives = 250/422 (59%), Gaps = 73/422 (17%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PLLI+ ++ H++S+V +RELKR++N+++SP
Sbjct: 994 QNVILVFFCVGMIAGVFPWFLVAVGPLLILFSVLHIVSRVL---IRELKRLDNITQSPFL 1050
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D+N FL + AMRWLAVR+D+++ IA+
Sbjct: 1051 SHITSSIQGLATIHAYNKRQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLIS-IALI 1109
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + A AGLA++YA +TGL QFTVR+ ETE F +VERIN+ K L
Sbjct: 1110 TTTGLMIVLMHGQIPSAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTL 1169
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K DWP++G I F+N +RYR+N PLVL VSF I E IGI
Sbjct: 1170 SLEAPARIKN-----KAPPHDWPQEGEITFENAEMRYRENLPLVLKKVSFTIKPKEKIGI 1224
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529
VGRTG+GKSSL +ALFRLVELS G IKID I+ + L LRS+L++IPQ+PVLF+G
Sbjct: 1225 VGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISDIGLADLRSKLTIIPQEPVLFSG--- 1281
Query: 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589
T+RS L
Sbjct: 1282 -------------------------------------TVRSNL----------------- 1287
Query: 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647
DPF + + ++WDALE++H+K + + KL+S+V GD S+GE+QLLC+ARALLR
Sbjct: 1288 -DPFNQYTEEQIWDALERTHMKECIAQLPLKLESEVMENGDNFSVGERQLLCIARALLRH 1346
Query: 648 TK 649
K
Sbjct: 1347 CK 1348
|
Acts as a multispecific organic anion pump which can transport nucleotide analogs. Rattus norvegicus (taxid: 10116) |
| >sp|Q80WJ6|MRP9_MOUSE Multidrug resistance-associated protein 9 OS=Mus musculus GN=Abcc12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 249/481 (51%), Gaps = 94/481 (19%)
Query: 228 YLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRS 287
+ + Q + ++F +++ VFP + L + ++ ++ ++F V+ELK++EN+SRS
Sbjct: 923 HAENFLQQFFMVVFILVIMAAVFPVVLVVLAGLAVIFLILLRIFHRGVQELKQVENISRS 982
Query: 288 PIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVI 347
P FS+++S++ GL +IH + K+ D + +F DENS+ L + A+RW A+R+D+L I
Sbjct: 983 PWFSHITSSIQGLGVIHAYDKKDDCISKFKTLNDENSSHLLYFNCALRWFALRMDILMNI 1042
Query: 348 AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSK 407
++ L S+S + GL+L+Y ++GLLQ VR ET+ F + E +
Sbjct: 1043 VTFVVALLVTLSFSSISASSKGLSLSYIIQLSGLLQVCVRTGTETQAKFTSAELLREYIL 1102
Query: 408 KLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENI 467
VPE P +V DWP +G I FK+ +RYRDN PLVL G N+
Sbjct: 1103 TCVPEHTHPF-----KVGTCPKDWPSRGEITFKDYRMRYRDNTPLVL--------DGLNL 1149
Query: 468 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527
I SGQ GI
Sbjct: 1150 NI---------------------QSGQTV-----------------------------GI 1159
Query: 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR 587
VGRTG+GKSSL +ALFRLVE +SG I ID+ DI +V LE LR++L++IPQDPVLF GT+R
Sbjct: 1160 VGRTGSGKSSLGMALFRLVEPASGTIIIDEVDICTVGLEDLRTKLTMIPQDPVLFVGTVR 1219
Query: 588 YNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645
YNLDP G D LW LE++ ++ ++ + KL ++V G+ S+GE+QLLC+ARALL
Sbjct: 1220 YNLDPLGSHTDEMLWHVLERTFMRDTIMKLPEKLQAEVTENGENFSVGERQLLCMARALL 1279
Query: 646 RKTK------------KKKKSGVNIT-----------------RPVTSCDKVLVMDNGQA 676
R +K K + V T V +CD VLVM+NG+
Sbjct: 1280 RNSKIILLDEATASMDSKTDTLVQSTIKEAFKSCTVLTIAHRLNTVLNCDLVLVMENGKV 1339
Query: 677 L 677
+
Sbjct: 1340 I 1340
|
Probable transporter. Mus musculus (taxid: 10090) |
| >sp|Q6Y306|MRP9_RAT Multidrug resistance-associated protein 9 OS=Rattus norvegicus GN=Abcc12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 248/481 (51%), Gaps = 94/481 (19%)
Query: 228 YLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRS 287
+ + Q ++F +++ FP + L + L+ ++ ++F V+ELK++EN+SRS
Sbjct: 923 HAENFLQQFSMVVFILVIMAASFPVVLVVLAGLAILFFILLRIFHRGVQELKQVENISRS 982
Query: 288 PIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVI 347
P FS+++S++ GL +IH + K+ D + +F DENS+ L + A+RW A+R+D+L I
Sbjct: 983 PWFSHITSSMQGLGVIHAYDKKDDCISKFKALNDENSSHLLYFNCALRWFALRMDILMNI 1042
Query: 348 AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSK 407
++ L S+S + GL+L+Y ++GLLQ VR ET+ F + E +
Sbjct: 1043 VTFVVALLVTLSFSSISASSKGLSLSYIIQLSGLLQVCVRTGTETQAKFTSAELMREYIS 1102
Query: 408 KLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENI 467
VPE T F +V DWP +G I FK+ +RYRDN PLVL G N+
Sbjct: 1103 TCVPEH----TQSF-KVGTCPKDWPSRGEITFKDYRMRYRDNTPLVL--------DGLNL 1149
Query: 468 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527
I SGQ GI
Sbjct: 1150 NI---------------------QSGQTV-----------------------------GI 1159
Query: 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR 587
VGRTG+GKSSL +ALFRLVE +SG I ID+ DI +V LE LR++L++IPQDPVLF GT+R
Sbjct: 1160 VGRTGSGKSSLGMALFRLVEPASGTIFIDEVDICTVGLEELRTKLTMIPQDPVLFVGTVR 1219
Query: 588 YNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645
YNLDP G D LW LE++ ++ ++ + KL ++V G+ S+GE+QLLC+ARALL
Sbjct: 1220 YNLDPLGSHTDEMLWHVLERTFMRDTIMKLPEKLQAEVTENGENFSVGERQLLCMARALL 1279
Query: 646 RKTK------------KKKKSGVNIT-----------------RPVTSCDKVLVMDNGQA 676
R +K K + V T V +CD VLVM+NG+
Sbjct: 1280 RNSKIILLDEATASMDSKTDTLVQSTIKEAFKSCTVLTIAHRLNTVLNCDLVLVMENGKV 1339
Query: 677 L 677
+
Sbjct: 1340 I 1340
|
Probable transporter. Rattus norvegicus (taxid: 10116) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (602), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 163/499 (32%), Positives = 249/499 (49%), Gaps = 111/499 (22%)
Query: 213 ITTLYHLISKVFRSVYLRSVFQNMWSMLF-----AFLMICFVFPWFALPLLIITTLYHLI 267
I+T+ L+ + RS W M F +MIC P FA+ ++ ++ LY +
Sbjct: 1084 ISTVDDLLPQTLRS----------WMMCFFGIAGTLVMICMATPVFAIIIIPLSILYISV 1133
Query: 268 SKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTL 327
+ R+L+R+++V++SPI+S+ S TV+GL II F +Q F+ +Q D N +
Sbjct: 1134 QVFYVATSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEKQIDINQKCV 1193
Query: 328 FLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVR 387
F + RWLA+R++++ + + L V + +++ + G L+ A ++T L + VR
Sbjct: 1194 FSWITSNRWLAIRLELVGNLVVFCSALLLVIYRKTLTGDVVGFVLSNALNITQTLNWLVR 1253
Query: 388 VFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYR 447
+ E E N +AVERI S+ + E P ++ K ADWPR G I+F N +RYR
Sbjct: 1254 MTSEAETNIVAVERI---SEYINVENEAPWVTD----KRPPADWPRHGEIQFNNYQVRYR 1306
Query: 448 DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 507
LVL ++ I GE +G+VGRTGAGKSSL LFR++E + GQI ID D+AS+ L
Sbjct: 1307 PELDLVLKGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDVASIGL 1366
Query: 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567
LR RL++IPQDP+LF+G +
Sbjct: 1367 HDLRERLTIIPQDPILFSG----------------------------------------S 1386
Query: 568 LRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ- 626
LR L DP F + D E+W ALE +HL+S V ++ L S+V
Sbjct: 1387 LRMNL-----DP-------------FNKYSDEEVWRALELAHLRSFVSGLQLGLLSEVTE 1428
Query: 627 -GDQLSLGEKQLLCLARALLRKTK----KKKKSGVN----------ITRPVTSC------ 665
GD LS+G++QLLCL RA+LRK+K + + V+ I + + C
Sbjct: 1429 GGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCTVITIA 1488
Query: 666 ---------DKVLVMDNGQ 675
DK++V+DNG+
Sbjct: 1489 HRLHTIMDSDKIMVLDNGK 1507
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|O88563|MRP3_RAT Canalicular multispecific organic anion transporter 2 OS=Rattus norvegicus GN=Abcc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (602), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 142/420 (33%), Positives = 214/420 (50%), Gaps = 66/420 (15%)
Query: 232 VFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFS 291
+F + ++ + ++I P F + +L + Y + + + R+LKR+E+VSRSPIFS
Sbjct: 1085 LFNSFYTSISTIVVIVASTPLFCVVVLPLAVFYGFVQRFYVATSRQLKRLESVSRSPIFS 1144
Query: 292 NVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAI 351
+ S TV+G +I + + QDF + D N T + + RWL V ++ + +
Sbjct: 1145 HFSETVTGTSVIRAYGRVQDFKVLSDAKVDSNQKTTYPYIASNRWLGVHVEFVGNCVVLF 1204
Query: 352 ITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVP 411
V S++P L GL+++YA VT L + +R + E N +AVER+ SK
Sbjct: 1205 SALFAVIGRNSLNPGLVGLSVSYALQVTLSLNWMIRTLSDLESNIIAVERVKEYSKT--- 1261
Query: 412 EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVG 471
E P E + WPR G ++F+N S+RYR LVL N++ + GE +GIVG
Sbjct: 1262 ETEAPWVLESNRAP---EGWPRSGVVEFRNYSVRYRPGLELVLKNLTLHVQGGEKVGIVG 1318
Query: 472 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
RTGAGKSS+ + LFR++E + G+I ID ++A + L LRS+L++IPQDP+LF+G
Sbjct: 1319 RTGAGKSSMTLCLFRILEAAEGEIFIDGLNVAHIGLHDLRSQLTIIPQDPILFSG----- 1373
Query: 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591
TLR L D
Sbjct: 1374 -----------------------------------TLRMNL------------------D 1380
Query: 592 PFGRCHDTELWDALEKSHLKSKVVTMRSKLD--SDVQGDQLSLGEKQLLCLARALLRKTK 649
PFGR D ++W LE SHL + V + + LD GD LS+G++QL+CLARALLRK++
Sbjct: 1381 PFGRYSDEDIWRTLELSHLSAFVSSQPTGLDFQCSEGGDNLSVGQRQLVCLARALLRKSR 1440
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Rattus norvegicus (taxid: 10116) |
| >sp|B2RX12|MRP3_MOUSE Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/414 (33%), Positives = 211/414 (50%), Gaps = 78/414 (18%)
Query: 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHII 303
++I P F + +L + LY + + + R+LKR+E++SRSPIFS+ S TV+G +I
Sbjct: 1098 MVIVASTPLFMVVVLPLAVLYGFVQRFYVATSRQLKRLESISRSPIFSHFSETVTGTSVI 1157
Query: 304 HVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSV 363
+ + QDF + D N + + + RWL V ++ + + V S+
Sbjct: 1158 RAYGRIQDFKVLSDTKVDNNQKSSYPYIASNRWLGVHVEFVGNCVVLFAALFAVIGRNSL 1217
Query: 364 SPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKK------LVPEGRGPI 417
+P L GL+++YA VT L + +R+ + E N +AVER+ SK +V R P
Sbjct: 1218 NPGLVGLSVSYALQVTMALNWMIRMISDLESNIIAVERVKEYSKTKTEAPWVVESNRAP- 1276
Query: 418 TSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGK 477
WP +G ++F+N S+RYR LVL NV+ + GE +GIVGRTGAGK
Sbjct: 1277 -----------EGWPTRGMVEFRNYSVRYRPGLELVLKNVTVHVQGGEKVGIVGRTGAGK 1325
Query: 478 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSS 537
SS+ + LFR++E + G+I ID ++A + L LRS+L++IPQDP+LF+G
Sbjct: 1326 SSMTLCLFRILEAAEGEIVIDGLNVAHIGLHDLRSQLTIIPQDPILFSG----------- 1374
Query: 538 LLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH 597
TLR L DPFGR
Sbjct: 1375 -----------------------------TLRMNL------------------DPFGRYS 1387
Query: 598 DTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRKTK 649
+ ++W ALE SHL + V + + LD GD LS+G++QL+CLARALLRK++
Sbjct: 1388 EEDIWRALELSHLNTFVSSQPAGLDFQCAEGGDNLSVGQRQLVCLARALLRKSR 1441
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Mus musculus (taxid: 10090) |
| >sp|Q96J65|MRP9_HUMAN Multidrug resistance-associated protein 9 OS=Homo sapiens GN=ABCC12 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 157/481 (32%), Positives = 241/481 (50%), Gaps = 104/481 (21%)
Query: 228 YLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRS 287
+ + Q + ++F +++ VFP L + + + ++ ++F V+ELK++ENVSRS
Sbjct: 926 HAENFLQQFFMVVFILVILAAVFPAVLLVVASLAVGFFILLRIFHRGVQELKKVENVSRS 985
Query: 288 PIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVI 347
P F++++S++ GL IIH + K++ C Y L + A+RW A+R+DVL I
Sbjct: 986 PWFTHITSSMQGLGIIHAYGKKES-----CITYH-----LLYFNCALRWFALRMDVLMNI 1035
Query: 348 AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSK 407
+ L S+S + GL+L+Y ++GLLQ VR ET+ F +VE +
Sbjct: 1036 LTFTVALLVTLSFSSISTSSKGLSLSYIIQLSGLLQVCVRTGTETQAKFTSVELLREYIS 1095
Query: 408 KLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENI 467
VPE P+ +V DWP +G I F++ +RYRDN PLVL +++ I G+ +
Sbjct: 1096 TCVPECTHPL-----KVGTCPKDWPSRGEITFRDYQMRYRDNTPLVLDSLNLNIQSGQTV 1150
Query: 468 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527
GIVGRTG+GKSSL +ALFRLVE +SG I ID+ DI + LE LR++L+VIPQDPVLF G
Sbjct: 1151 GIVGRTGSGKSSLGMALFRLVEPASGTIFIDEVDICILSLEDLRTKLTVIPQDPVLFVGT 1210
Query: 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR 587
V + +D F+ + E+
Sbjct: 1211 V-----------------------RYNLDPFESHTDEM---------------------- 1225
Query: 588 YNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645
LW LE++ ++ ++ + KL ++V G+ S+GE+QLLC+ARALL
Sbjct: 1226 -------------LWQVLERTFMRDTIMKLPEKLQAEVTENGENFSVGERQLLCVARALL 1272
Query: 646 RKTK------------KKKKSGVNIT-----------------RPVTSCDKVLVMDNGQA 676
R +K K + V T V +CD VLVM+NG+
Sbjct: 1273 RNSKIILLDEATASMDSKTDTLVQNTIKDAFKGCTVLTIAHRLNTVLNCDHVLVMENGKV 1332
Query: 677 L 677
+
Sbjct: 1333 I 1333
|
Probable transporter. Homo sapiens (taxid: 9606) |
| >sp|Q6UR05|MRP1_CANFA Multidrug resistance-associated protein 1 OS=Canis familiaris GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 140/417 (33%), Positives = 225/417 (53%), Gaps = 66/417 (15%)
Query: 235 NMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVS 294
++++++ A ++I P ++ + + +Y + + + + R+LKR+E+VSRSP++S+ +
Sbjct: 1097 SLFNVIGACIIILLATPIASIIIPPLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFN 1156
Query: 295 STVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITG 354
T+ G+ +I F +++ F+R+ + DEN + +A RWLAVR++ + +
Sbjct: 1157 ETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAAL 1216
Query: 355 LTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGR 414
+V S+S L GL+++Y+ VT L + VR+ E E N +AVER+ S+ E
Sbjct: 1217 FSVISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSET---EKE 1273
Query: 415 GPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTG 474
P Q + WP+ G ++F++ LRYR+N LVL +++ IN GE +GIVGRTG
Sbjct: 1274 APWQI---QEMAPPSTWPQVGRVEFRDYGLRYRENLDLVLKHINITINGGEKVGIVGRTG 1330
Query: 475 AGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAG 534
AGKSSL + LFR+ E + G+I IDD +IA + L LR ++++IPQDPVLF+G
Sbjct: 1331 AGKSSLTLGLFRINESAEGEIIIDDINIAKIGLHDLRVKITIIPQDPVLFSG-------- 1382
Query: 535 KSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594
+LR L DP F
Sbjct: 1383 --------------------------------SLRMNL-----DP-------------FS 1392
Query: 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRKTK 649
+ D E+W +LE +HLK V + KL+ + G+ LS+G++QL+CLARALLRKTK
Sbjct: 1393 QYSDEEVWTSLELAHLKDFVSGLPDKLNQECAEGGENLSVGQRQLVCLARALLRKTK 1449
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Canis familiaris (taxid: 9615) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | ||||||
| 242007214 | 1348 | multidrug resistance-associated protein, | 0.525 | 0.264 | 0.453 | 6e-98 | |
| 383858955 | 3134 | PREDICTED: sodium leak channel non-selec | 0.568 | 0.122 | 0.415 | 2e-95 | |
| 380029467 | 2712 | PREDICTED: uncharacterized protein LOC10 | 0.568 | 0.141 | 0.407 | 2e-93 | |
| 307203917 | 1330 | Multidrug resistance-associated protein | 0.528 | 0.269 | 0.449 | 1e-92 | |
| 328788957 | 2991 | PREDICTED: sodium leak channel non-selec | 0.567 | 0.128 | 0.402 | 4e-91 | |
| 307176278 | 3147 | Sodium leak channel non-selective protei | 0.530 | 0.114 | 0.436 | 4e-91 | |
| 340723232 | 3140 | PREDICTED: sodium leak channel non-selec | 0.567 | 0.122 | 0.397 | 2e-90 | |
| 332026703 | 3146 | Sodium leak channel non-selective protei | 0.530 | 0.114 | 0.434 | 5e-90 | |
| 449277675 | 1435 | Multidrug resistance-associated protein | 0.515 | 0.243 | 0.428 | 6e-85 | |
| 291400359 | 1437 | PREDICTED: ATP-binding cassette, sub-fam | 0.515 | 0.242 | 0.431 | 1e-84 |
| >gi|242007214|ref|XP_002424437.1| multidrug resistance-associated protein, putative [Pediculus humanus corporis] gi|212507837|gb|EEB11699.1| multidrug resistance-associated protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 192/423 (45%), Positives = 266/423 (62%), Gaps = 67/423 (15%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
+ ++ QN+WS+ F+FL I VFPWF PL+++T LY+ +SK+FR+A+R+LKRMEN+SR+P
Sbjct: 906 METMLQNIWSVAFSFLSITLVFPWFVFPLIVLTGLYYFVSKIFRVAIRDLKRMENISRAP 965
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIA 348
+FS++S+TV GL +IH F+KE ++++ FC+ +D NST FL + AMRW+AVR+D ++V+
Sbjct: 966 VFSSISATVQGLSVIHAFNKESNYLKEFCKLFDHNSTVFFLSNNAMRWIAVRLDFISVLI 1025
Query: 349 MAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKK 408
I + L G V+PA AGLALTYA+ + G+ Q+T+R+ E E F++VERI N K
Sbjct: 1026 SFITSFLVALLKGEVAPAYAGLALTYAAQICGVFQYTIRLISENEARFISVERIQNAIDK 1085
Query: 409 LVPEGRGPITSEFGQVKVKL-ADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENI 467
L E E K+ + +DWP +G I+FKNV L Y N P VL ++SF ++ GE I
Sbjct: 1086 LKDE-------ENSSCKINVESDWPSKGLIEFKNVKLNYGTNLPDVLHDISFVLSGGEKI 1138
Query: 468 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527
GIVGRTGAGKSSL+ ALFRLVELSSG I ID DI+ + L TLRSRLSVIPQDPVLF+G
Sbjct: 1139 GIVGRTGAGKSSLVSALFRLVELSSGNIFIDGIDISKISLFTLRSRLSVIPQDPVLFSG- 1197
Query: 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR 587
+LR+ L
Sbjct: 1198 ---------------------------------------SLRANL--------------- 1203
Query: 588 YNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ-GDQLSLGEKQLLCLARALLR 646
DP G+ D +++ L K+ L +K+ +M +KL + V+ G+ LSLGEKQL+CLAR LLR
Sbjct: 1204 ---DPLGQYDDEKIFGILNKTRLSTKIKSMTNKLSTYVEDGEGLSLGEKQLVCLARVLLR 1260
Query: 647 KTK 649
+K
Sbjct: 1261 GSK 1263
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383858955|ref|XP_003704964.1| PREDICTED: sodium leak channel non-selective protein-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/479 (41%), Positives = 278/479 (58%), Gaps = 94/479 (19%)
Query: 227 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSR 286
+ + ++ QN+++ FA + IC + PWF L L+I+ + +SKVFR+A+R+ KRME+ SR
Sbjct: 967 ISVENMVQNIFTCSFAIIFICSILPWFCLLLIIVGVTFFYVSKVFRVAMRDFKRMESTSR 1026
Query: 287 SPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAV 346
SP+ S V++T+ GL IH F KE+ FV +F E +D NS ++LC AMRW AVR+D LAV
Sbjct: 1027 SPVLSFVTTTIHGLSTIHAFQKEKTFVTKFEELFDLNSLCVYLCQSAMRWSAVRLDGLAV 1086
Query: 347 IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406
+ +I++ L +AF +SPALAGLA+ YA+ +TG+ Q+TVR+ ETE F+++ERI+
Sbjct: 1087 ASSSIVSFLVIAFRNQLSPALAGLAMAYATQMTGVFQYTVRLMAETETRFISIERISYYF 1146
Query: 407 KKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGEN 466
+ L E P DWP G ++F+ V L+YR P +L N+SF + GE+
Sbjct: 1147 RTLQNEDI-PKKDAVNPAN----DWPAYGKLEFRKVQLKYRKELPPILDNISFVVKPGEH 1201
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
IGIVGRTGAGKSSL+VALFRLVE+S+G+IKIDD DI+ V LE LRS+LS+IPQDPVLFNG
Sbjct: 1202 IGIVGRTGAGKSSLIVALFRLVEISAGKIKIDDIDISKVNLELLRSKLSIIPQDPVLFNG 1261
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
T+RS L
Sbjct: 1262 ----------------------------------------TIRSNL-------------- 1267
Query: 587 RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDS--DVQGDQLSLGEKQLLCLARAL 644
DPF + D+E+W ALEK+ LK KV T+ +LD+ +V G+ LS+GE+QL CL+RAL
Sbjct: 1268 ----DPFKQYSDSEIWSALEKTKLKEKVKTISGQLDAFVEVGGNNLSVGERQLFCLSRAL 1323
Query: 645 LRKTK------------KKKKSGVNIT-----------------RPVTSCDKVLVMDNG 674
LR K + ++ V T + V SCD+++VM NG
Sbjct: 1324 LRNAKVLVLDEATAAVDPETETAVQSTIQNEFSNCTTLTIAHRLKTVVSCDRIIVMRNG 1382
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380029467|ref|XP_003698393.1| PREDICTED: uncharacterized protein LOC100864571 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 196/481 (40%), Positives = 275/481 (57%), Gaps = 96/481 (19%)
Query: 227 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSR 286
+ + ++ QN+ + FA + IC + PW+ LPL+I+ ++ IS++FR+A+R+ KRMEN+SR
Sbjct: 979 ISIENMVQNIITCSFAIVFICAILPWYCLPLIILAAIFFYISRIFRVAMRDFKRMENISR 1038
Query: 287 SPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAV 346
SP+ S +++T+ GL+ IH F KE+ FV +F E +D N+ L+LC MRW AVR+D+LA+
Sbjct: 1039 SPVLSFITTTIHGLNTIHAFQKEKAFVNKFEELFDLNNLCLYLCQSIMRWSAVRLDILAI 1098
Query: 347 IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406
+ +I +A +SPALAGLA+ YA +TG+ Q+TVR+ E E F++VERIN
Sbjct: 1099 ASSSITAFFVIALKNQISPALAGLAMAYAMQMTGIFQYTVRLMAEIETRFISVERINYYL 1158
Query: 407 KKLVPEGRGPITSEFGQVKVKLAD-WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGE 465
K L E SE Q + L D WP G ++F V L+YR P L N+SF I GE
Sbjct: 1159 KTLQKEE----ISE--QHLIDLPDQWPIDGKLEFCKVELKYRKGLPPALDNISFIIKPGE 1212
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
+IGIVGRTGAGKSSL++ALFRL+E+S+G+IKID DIA V+L+ LR++LS+IPQDPVLFN
Sbjct: 1213 HIGIVGRTGAGKSSLIIALFRLIEISAGKIKIDGIDIAKVKLKLLRTKLSIIPQDPVLFN 1272
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
G T+RS L
Sbjct: 1273 G----------------------------------------TIRSNL------------- 1279
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDS--DVQGDQLSLGEKQLLCLARA 643
DPF + D+E+W LEK+ LK KV M +LD+ +V+G LS+GE+QL CL+RA
Sbjct: 1280 -----DPFKQFSDSEIWSILEKTQLKEKVQVMPGQLDAPVEVEGKNLSVGERQLFCLSRA 1334
Query: 644 LLRKTK-----------------------KKKKSGVNI------TRPVTSCDKVLVMDNG 674
LLR K + + S I + V SCD+++VM NG
Sbjct: 1335 LLRSAKVLVLDEATAAVDPETEIAVQNIIQNEFSNTTILTIAHRLKTVISCDRIIVMKNG 1394
Query: 675 Q 675
Q
Sbjct: 1395 Q 1395
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307203917|gb|EFN82824.1| Multidrug resistance-associated protein 5 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/427 (44%), Positives = 262/427 (61%), Gaps = 69/427 (16%)
Query: 227 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSR 286
+ + ++ QN+++ FA IC + PWF LPLLI L+ +SK+FRI +R+LKRMENVSR
Sbjct: 885 ISIENMVQNIFTCSFAIFFICGILPWFFLPLLIFGALFFFVSKLFRIGMRDLKRMENVSR 944
Query: 287 SPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAV 346
SP+ S V++T+ GL IH F KE+ FV +F E Y+ N+ +LC AMRW AVR+D L V
Sbjct: 945 SPVLSFVTTTIQGLSTIHAFQKEKSFVHKFEELYNTNNLCQYLCQAAMRWSAVRLDSL-V 1003
Query: 347 IAMAIITG-LTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNC 405
IA ++IT L ++ +SPA AGLA+ Y++ +TG+ Q+TVR+ ETE+ F++VERI+
Sbjct: 1004 IASSLITALLVISLKNELSPAFAGLAMAYSTQMTGVFQYTVRLMSETEMRFISVERISYY 1063
Query: 406 SKKLVPEGRGPITSEFGQVKVKLAD-WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHG 464
K L EG V VK AD WP +G I+FK+V +RYR+ PLVL +V F + G
Sbjct: 1064 LKTLQREGASKT------VDVKPADNWPSRGKIEFKSVRMRYREELPLVLVDVCFSVKAG 1117
Query: 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
E IGIVGRTG+GKSSL+VALFRLVE+ G IKID DI+ +EL+ LRS+LS+IPQDP+LF
Sbjct: 1118 EKIGIVGRTGSGKSSLVVALFRLVEICEGGIKIDGIDISKLELDVLRSKLSIIPQDPILF 1177
Query: 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584
+G T++S L DP
Sbjct: 1178 SG----------------------------------------TIKSNL-----DP----- 1187
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLAR 642
F + D+++W+ALEK+ +K KV M KLD+ V G+ LS+GE+QLLCL+R
Sbjct: 1188 --------FQQHADSDIWNALEKTQMKDKVSLMPGKLDASVAFGGNNLSVGERQLLCLSR 1239
Query: 643 ALLRKTK 649
ALL K
Sbjct: 1240 ALLHSAK 1246
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328788957|ref|XP_397384.3| PREDICTED: sodium leak channel non-selective protein [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 193/480 (40%), Positives = 273/480 (56%), Gaps = 96/480 (20%)
Query: 227 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSR 286
+ + ++ QN+ + FA + IC + PW+ LPL+I+ ++ IS++FR+A+R+ KRMEN+SR
Sbjct: 979 ISVENMIQNIITCSFAIVFICVILPWYCLPLIILAVIFFYISRIFRVAMRDFKRMENISR 1038
Query: 287 SPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAV 346
SP+ S +++T+ GL+ IH F KE+ FV +F E +D N+ L+LC MRW AVR+D+LA+
Sbjct: 1039 SPVLSFITTTIHGLNTIHAFQKEKAFVNKFEELFDLNNLCLYLCQSIMRWSAVRLDILAI 1098
Query: 347 IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406
+ +I L +A +SPALAGLA+ YA +TG+ Q+TVR+ E E F++VERI+
Sbjct: 1099 ASSSITAFLVIALKNQISPALAGLAMAYAMQMTGIFQYTVRLMAEIETRFISVERISYYL 1158
Query: 407 KKLVPEGRGPITSEFGQVKVKLAD-WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGE 465
K L E SE Q + L D WP G ++F V L+YR L N+SF I GE
Sbjct: 1159 KTLQKEE----ISE--QHLIDLPDQWPIDGELEFCKVELKYRKGLSPALDNISFIIKPGE 1212
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
+IGIVGRTGAGKSSL++ALFRL+E+S+G+IKID DIA + L+ LR++LS+IPQDPVLFN
Sbjct: 1213 HIGIVGRTGAGKSSLIIALFRLIEISAGKIKIDGIDIAKINLKVLRTKLSIIPQDPVLFN 1272
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
G T+RS L
Sbjct: 1273 G----------------------------------------TIRSNL------------- 1279
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDS--DVQGDQLSLGEKQLLCLARA 643
DPF + D+E+W LEK+ LK KV M +LD+ +V+G LS+GE+QL CL+RA
Sbjct: 1280 -----DPFKQFSDSEIWSVLEKTQLKEKVQVMPGQLDAPIEVEGKNLSVGERQLFCLSRA 1334
Query: 644 LLRKTK-----------------------KKKKSGVNI------TRPVTSCDKVLVMDNG 674
LLR K + + S I + V SCD+++VM NG
Sbjct: 1335 LLRNAKILVLDEATAAVDPETEIAVQNTIQNEFSNTTILTIAHRLKTVISCDRIIVMKNG 1394
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307176278|gb|EFN65909.1| Sodium leak channel non-selective protein [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 186/426 (43%), Positives = 262/426 (61%), Gaps = 67/426 (15%)
Query: 227 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSR 286
+ + ++ QN+++ +FA IC V PWF++PL + TL+ +SK+FR+ +R+LKRM+N+SR
Sbjct: 976 ISIENMVQNIFTCVFAIFFICGVLPWFSIPLFLFGTLFFFVSKLFRVGMRDLKRMDNISR 1035
Query: 287 SPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAV 346
SP+ S V++T+ GL+ IH F KE++F+ RF E ++ N+ L +C AMRW AVR+D L +
Sbjct: 1036 SPVLSFVTTTIQGLNTIHAFQKEKNFLYRFEELFNTNNLCLQMCQAAMRWSAVRLDSLVI 1095
Query: 347 IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406
+ I L ++F +SPA AGLA+ YA+ +TG+ Q+TVR+ ETE+ F++VERI+
Sbjct: 1096 ASSCITALLVISFKNELSPAFAGLAMAYATQMTGIFQYTVRLMSETEMRFISVERISYYL 1155
Query: 407 KKLVPEGRGPITSEFGQVKVKLA-DWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGE 465
K L EG V +K A DWP +G I+FK V LRYR+ PLVL +VSF I GE
Sbjct: 1156 KTLQREGASKT------VALKPADDWPSRGKIEFKAVQLRYREELPLVLIDVSFSIKAGE 1209
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
IGIVGRTG+GKSSL+VALFRLVE+ G IKID D++ ++L+ LRSRLS+IPQDP+LF+
Sbjct: 1210 KIGIVGRTGSGKSSLVVALFRLVEICEGIIKIDGIDVSKLDLDVLRSRLSIIPQDPILFS 1269
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
G T+RS L
Sbjct: 1270 G----------------------------------------TIRSNL------------- 1276
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARA 643
DPF R D ++W+ALEK+ +K++V M LD+ V G+ LS+GE+QLLCL+RA
Sbjct: 1277 -----DPFQRHTDYDIWNALEKTQMKARVSLMPKNLDASVGFGGNNLSVGERQLLCLSRA 1331
Query: 644 LLRKTK 649
LL K
Sbjct: 1332 LLHSAK 1337
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340723232|ref|XP_003399996.1| PREDICTED: sodium leak channel non-selective protein-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/480 (39%), Positives = 274/480 (57%), Gaps = 96/480 (20%)
Query: 227 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSR 286
+ + ++ QN+ + FA + IC + PWF +PL+I+ ++ ISK+FR+A+R+ KR+E+ SR
Sbjct: 974 ISVENMVQNIITCSFAIIAICAILPWFCIPLIILAAVFFYISKIFRVAMRDFKRIESTSR 1033
Query: 287 SPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAV 346
SP+ S V++T+ GL+ IH F K + FV +F E D N+ L+LC MRW AVR+D+LA+
Sbjct: 1034 SPVLSFVTTTIHGLNTIHAFQKGKAFVNKFEELIDLNNLCLYLCQSTMRWSAVRLDILAI 1093
Query: 347 IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406
I+ +I L + +SP LAGLA+ YA +TG+ Q+TVR+ ETE F++VERI+
Sbjct: 1094 ISSSITAFLVILLKNQISPPLAGLAMAYAMQMTGVFQYTVRLMAETETRFISVERISYYL 1153
Query: 407 KKLVPEGRGPITSEFGQVKVKLAD-WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGE 465
+ L E FG + +D WP G ++F V L+YR P VL N+SF I GE
Sbjct: 1154 RTLQKE------ESFGNEPINPSDQWPTDGKLEFHKVELKYRKELPPVLDNISFVIKSGE 1207
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
+IGIVGRTGAGKSSL+VALFRLVE+S+G+I+ID DIA V+L+ LR++LS+IPQDPVLF+
Sbjct: 1208 HIGIVGRTGAGKSSLIVALFRLVEISNGKIQIDGIDIAKVKLKLLRNKLSIIPQDPVLFS 1267
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
G T+RS L
Sbjct: 1268 G----------------------------------------TIRSNL------------- 1274
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDS--DVQGDQLSLGEKQLLCLARA 643
DPF + D+E+W LEK+ LK K+ M ++L++ +V G+ LS+GE+QLLCL+RA
Sbjct: 1275 -----DPFEQFDDSEIWSVLEKTQLKEKIQAMPAELNAPIEVGGNNLSVGERQLLCLSRA 1329
Query: 644 LLRKTK------------KKKKSGVNIT-----------------RPVTSCDKVLVMDNG 674
LLR K + + V T + V SC++V+VM NG
Sbjct: 1330 LLRNAKIIVLDEATAAVDPETEVAVQNTIQNAFSNSTVLTIAHRLKTVISCNRVIVMKNG 1389
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332026703|gb|EGI66812.1| Sodium leak channel non-selective protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 338 bits (868), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 257/426 (60%), Gaps = 67/426 (15%)
Query: 227 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSR 286
+ + ++ QN+++ FA IC + PWF++PLL+ L+ + K+FRI +R+LKRME+VSR
Sbjct: 972 ISIENMVQNIFTCSFAIFFICGILPWFSIPLLLFGILFFFVGKLFRIGMRDLKRMESVSR 1031
Query: 287 SPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAV 346
SP+ S V++T+ GL IH F KE++F+ RF E ++ N+ +LC AMRW A+R+D L +
Sbjct: 1032 SPVLSFVTTTIQGLSTIHAFQKEKNFLYRFEELFNTNNVCQYLCQAAMRWSAIRLDSLVI 1091
Query: 347 IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406
A II ++F +SPA AGLA+ YA+ +TG+ Q+TVR+ ETE+ F++VERI+
Sbjct: 1092 AASCIIALFVISFKNEISPAFAGLAMAYATQMTGVFQYTVRLMSETEVRFISVERISYYL 1151
Query: 407 KKLVPEGRGPITSEFGQVKVKLA-DWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGE 465
K L EG V +K A DWP +G I+FK V +RYR+ PL+L +VSF I GE
Sbjct: 1152 KTLQKEGANRT------VALKPADDWPSRGKIEFKAVQMRYREELPLILLDVSFTIKAGE 1205
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
IGIVGRTG+GKSSL+VALFRLVE+ G IKID DI+ +EL+ LR++LS+IPQDP+LF+
Sbjct: 1206 KIGIVGRTGSGKSSLVVALFRLVEICEGVIKIDGIDISKLELDILRNKLSIIPQDPILFS 1265
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
G T+RS L
Sbjct: 1266 G----------------------------------------TIRSNL------------- 1272
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARA 643
DPF D ++W+ LEK+ +K KV M LD+ V G+ LS+GE+QLLCLARA
Sbjct: 1273 -----DPFQHHADHDIWNVLEKTQMKEKVSLMPGNLDASVGFGGNNLSVGERQLLCLARA 1327
Query: 644 LLRKTK 649
LL TK
Sbjct: 1328 LLHSTK 1333
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|449277675|gb|EMC85769.1| Multidrug resistance-associated protein 5 [Columba livia] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 181/422 (42%), Positives = 252/422 (59%), Gaps = 73/422 (17%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F +I VFPWF + PL+++ T+ H++S+VF +RELKR++N+++SP
Sbjct: 993 QNVILVFFCVGVISGVFPWFLVAVGPLIVLFTVLHVVSRVF---IRELKRLDNITQSPFL 1049
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH +HK Q+F+ R+ E D+N +L S AMRWLAVR+D+++ IA+
Sbjct: 1050 SHITSSIQGLSTIHAYHKGQEFLHRYQELLDDNQAPFYLFSCAMRWLAVRLDIIS-IALI 1108
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + PA AGLA++YA +TGL QFTVR+ ETE F +VERI++ K L
Sbjct: 1109 TTTGLMIVLMHGQIPPAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERIDHYIKTL 1168
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K DWP++G + F+N +RYR+N PLVL VSF I E IGI
Sbjct: 1169 SLEAPARIKN-----KAPPLDWPQEGEVVFENAEMRYRENLPLVLKKVSFTIKPKEKIGI 1223
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529
VGRTG+GKSSL +ALFRLVELS G IKID I + L LRS+LS+IPQ+PVLF+G
Sbjct: 1224 VGRTGSGKSSLGMALFRLVELSGGCIKIDGLKINDIGLADLRSKLSIIPQEPVLFSG--- 1280
Query: 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589
T+RS L
Sbjct: 1281 -------------------------------------TVRSNL----------------- 1286
Query: 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647
DPF + + ++WDALE++H+K V + KLDS+V G+ S+GE+QLLC+ARALLR+
Sbjct: 1287 -DPFNQYSEEQIWDALERTHMKECVAQLPMKLDSEVMENGENFSVGERQLLCIARALLRR 1345
Query: 648 TK 649
K
Sbjct: 1346 CK 1347
|
Source: Columba livia Species: Columba livia Genus: Columba Family: Columbidae Order: Columbiformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|291400359|ref|XP_002716534.1| PREDICTED: ATP-binding cassette, sub-family C, member 5 [Oryctolagus cuniculus] | Back alignment and taxonomy information |
|---|
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 182/422 (43%), Positives = 252/422 (59%), Gaps = 73/422 (17%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PL+I+ ++ H++S+V +RELKR++N+++SP
Sbjct: 995 QNVILVFFCVGMIAGVFPWFLVAVGPLVILFSVLHIVSRVL---IRELKRLDNITQSPFL 1051
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D+N FL + AMRWLAVR+D+++ IA+
Sbjct: 1052 SHITSSIQGLATIHAYNKGQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLIS-IALI 1110
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + PA AGLA++YA +TGL QFTVR+ ETE F +VERIN+ K L
Sbjct: 1111 TTTGLMIVLMHGQIPPAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTL 1170
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K ADWP+QG + F+N +RYR+N PLVL VSF I E IGI
Sbjct: 1171 SLEAPARIKN-----KAPPADWPQQGEVTFENAEMRYRENLPLVLKKVSFTIKPKEKIGI 1225
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529
VGRTG+GKSSL +ALFRLVELS G IKID I+ + L LRS+LS+IPQ+PVLF+G
Sbjct: 1226 VGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISGIGLADLRSKLSIIPQEPVLFSG--- 1282
Query: 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589
T+RS L
Sbjct: 1283 -------------------------------------TVRSNL----------------- 1288
Query: 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647
DPF + + ++WDALE++H+K + + KL+S+V GD S+GE+QLLC+ARALLR
Sbjct: 1289 -DPFNQYTEDQIWDALERTHMKECITQLPLKLESEVMENGDNFSVGERQLLCIARALLRH 1347
Query: 648 TK 649
K
Sbjct: 1348 CK 1349
|
Source: Oryctolagus cuniculus Species: Oryctolagus cuniculus Genus: Oryctolagus Family: Leporidae Order: Lagomorpha Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | ||||||
| ZFIN|ZDB-GENE-050517-17 | 1426 | abcc5 "ATP-binding cassette, s | 0.423 | 0.201 | 0.466 | 5e-68 | |
| UNIPROTKB|O15440 | 1437 | ABCC5 "Multidrug resistance-as | 0.422 | 0.199 | 0.491 | 9.2e-68 | |
| UNIPROTKB|F1P857 | 1438 | ABCC5 "Uncharacterized protein | 0.422 | 0.198 | 0.484 | 2.2e-67 | |
| UNIPROTKB|E1BXT6 | 1435 | ABCC5 "Uncharacterized protein | 0.422 | 0.199 | 0.488 | 2.5e-67 | |
| MGI|MGI:1351644 | 1436 | Abcc5 "ATP-binding cassette, s | 0.422 | 0.199 | 0.491 | 2.5e-67 | |
| UNIPROTKB|F1SG89 | 1263 | ABCC5 "Uncharacterized protein | 0.422 | 0.226 | 0.491 | 2.6e-67 | |
| RGD|70913 | 1436 | Abcc5 "ATP-binding cassette, s | 0.422 | 0.199 | 0.491 | 5.1e-67 | |
| UNIPROTKB|Q9QYM0 | 1436 | Abcc5 "Multidrug resistance-as | 0.422 | 0.199 | 0.491 | 5.1e-67 | |
| UNIPROTKB|F1MZD4 | 1183 | Bt.104466 "Uncharacterized pro | 0.422 | 0.241 | 0.485 | 3.1e-66 | |
| ZFIN|ZDB-GENE-050517-25 | 1368 | abcc12 "ATP-binding cassette, | 0.418 | 0.206 | 0.460 | 1.3e-60 |
| ZFIN|ZDB-GENE-050517-17 abcc5 "ATP-binding cassette, sub-family C (CFTR/MRP), member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 5.0e-68, Sum P(2) = 5.0e-68
Identities = 139/298 (46%), Positives = 199/298 (66%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ +LF +I VFPWF + PL+++ T+ H++S+VF +RELKR++NV++SP
Sbjct: 984 QNVILVLFCLAVIGSVFPWFLVAVGPLVLLFTVLHVVSRVF---IRELKRLDNVTQSPFL 1040
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL +H + KE +F+ R+ E D+N +L S AMRWLAVR+DV++V ++
Sbjct: 1041 SHIASSIQGLTTVHAYGKEDEFLHRYQELLDQNQAPFYLFSCAMRWLAVRLDVISVALIS 1100
Query: 351 IITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLV 410
I + V HG + PA AGLA++YA +TGL QFTVR+ ETE F +VERI++ K L
Sbjct: 1101 ITALMIVLMHGQIPPAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERIHHYIKSLS 1160
Query: 411 PEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIV 470
E + + K +DWP++G I F ++YRDN PL+L VSF + E IGIV
Sbjct: 1161 LEAPARVKN-----KAPPSDWPQEGEIVFDQTEMKYRDNLPLILKKVSFTVRPKEKIGIV 1215
Query: 471 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
GRTG+GKSSL V L+RLVE G IKID +I + L +RS+LS+IPQ+PVLF+G V
Sbjct: 1216 GRTGSGKSSLGVVLYRLVEPCGGSIKIDGVNICDIGLADVRSKLSIIPQEPVLFSGTV 1273
|
|
| UNIPROTKB|O15440 ABCC5 "Multidrug resistance-associated protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 147/299 (49%), Positives = 203/299 (67%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PL+I+ ++ H++S R+ +RELKR++N+++SP
Sbjct: 995 QNVILVFFCVGMIAGVFPWFLVAVGPLVILFSVLHIVS---RVLIRELKRLDNITQSPFL 1051
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D+N FL + AMRWLAVR+D+++ IA+
Sbjct: 1052 SHITSSIQGLATIHAYNKGQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLIS-IALI 1110
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + PA AGLA++YA +TGL QFTVR+ ETE F +VERIN+ K L
Sbjct: 1111 TTTGLMIVLMHGQIPPAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTL 1170
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K DWP++G + F+N +RYR+N PLVL VSF I E IGI
Sbjct: 1171 SLEAPARIKN-----KAPSPDWPQEGEVTFENAEMRYRENLPLVLKKVSFTIKPKEKIGI 1225
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
VGRTG+GKSSL +ALFRLVELS G IKID I+ + L LRS+LS+IPQ+PVLF+G V
Sbjct: 1226 VGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISDIGLADLRSKLSIIPQEPVLFSGTV 1284
|
|
| UNIPROTKB|F1P857 ABCC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 687 (246.9 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 145/299 (48%), Positives = 201/299 (67%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PL I+ ++ H++S R+ +RELKR++N+++SP
Sbjct: 995 QNVILVFFCVGMIAGVFPWFLVAVGPLFILFSVLHIVS---RVLIRELKRLDNITQSPFL 1051
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D N FL + AMRWLAVR+D+++ IA+
Sbjct: 1052 SHITSSIQGLATIHAYNKGQEFLHRYQELLDNNQGPFFLFTCAMRWLAVRLDLIS-IALI 1110
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + PA +GLA++YA +TGL QFTVR+ ETE F +VERIN+ K L
Sbjct: 1111 TTTGLMIVLMHGQIPPAYSGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTL 1170
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K DWP++G + F+N +RY++N PLVL VSF I E IGI
Sbjct: 1171 SLEAPARIKN-----KAPSPDWPQEGEVTFENAEMRYQENLPLVLKKVSFTIKPKEKIGI 1225
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
VGRTG+GKSSL +ALFRLVELS G IKID I+ + L LRS+LS+IPQ+PVLF+G V
Sbjct: 1226 VGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISDIGLADLRSKLSIIPQEPVLFSGTV 1284
|
|
| UNIPROTKB|E1BXT6 ABCC5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 2.5e-67, P = 2.5e-67
Identities = 146/299 (48%), Positives = 201/299 (67%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F +I VFPWF + PL+++ + H +S+VF +RELKR++N+++SP
Sbjct: 993 QNVILVFFCVGVISGVFPWFLVAVGPLIVLFMVLHAVSRVF---IRELKRLDNITQSPFL 1049
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH +HK Q+F+ R+ E D+N +L S AMRWLAVR+D+++ IA+
Sbjct: 1050 SHITSSIQGLSTIHAYHKGQEFLHRYQELLDDNQAPFYLFSCAMRWLAVRLDIIS-IALI 1108
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + PA AGLA++YA +TGL QFTVR+ ETE F +VERI++ K L
Sbjct: 1109 TTTGLMIVLMHGQIPPAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERIDHYIKTL 1168
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K DWP++G + F+N +RYR+N PLVL VSF I E IGI
Sbjct: 1169 SLEAPARIKN-----KTPPLDWPQEGEVVFENAEMRYRENLPLVLKKVSFTIKPKEKIGI 1223
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
VGRTG+GKSSL +ALFRLVELS G IKID I + L LRS+LS+IPQ+PVLF+G V
Sbjct: 1224 VGRTGSGKSSLGMALFRLVELSGGCIKIDGVKINDIGLADLRSKLSIIPQEPVLFSGTV 1282
|
|
| MGI|MGI:1351644 Abcc5 "ATP-binding cassette, sub-family C (CFTR/MRP), member 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 2.5e-67, P = 2.5e-67
Identities = 147/299 (49%), Positives = 202/299 (67%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PLLI+ +L H++S R+ +RELKR++N+++SP
Sbjct: 994 QNVILVFFCVGMIAGVFPWFLVAVGPLLILFSLLHIVS---RVLIRELKRLDNITQSPFL 1050
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D+N FL + AMRWLAVR+D+++ IA+
Sbjct: 1051 SHITSSIQGLATIHAYNKRQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLIS-IALI 1109
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + A AGLA++YA +TGL QFTVR+ ETE F +VERIN+ K L
Sbjct: 1110 TTTGLMIVLMHGQIPSAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTL 1169
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K DWP++G + F+N +RYR+N PLVL VSF I E IGI
Sbjct: 1170 SLEAPARIKN-----KAPPHDWPQEGEVTFENAEMRYRENLPLVLKKVSFTIKPKEKIGI 1224
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
VGRTG+GKSSL +ALFRLVELS G IKID I+ + L LRS+L++IPQ+PVLF+G V
Sbjct: 1225 VGRTGSGKSSLGMALFRLVELSGGCIKIDGIRISDIGLADLRSKLAIIPQEPVLFSGTV 1283
|
|
| UNIPROTKB|F1SG89 ABCC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 2.6e-67, P = 2.6e-67
Identities = 147/299 (49%), Positives = 203/299 (67%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PL I+ +L H++S R+ +RELKR++N+++SP
Sbjct: 954 QNVILVFFCVGMIAGVFPWFLVAVGPLGILFSLLHMVS---RVLIRELKRLDNITQSPFL 1010
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D N + FL + AMRWLAVR+D+++ IA+
Sbjct: 1011 SHITSSIQGLATIHAYNKGQEFLHRYQELLDTNQSPFFLFTCAMRWLAVRLDLIS-IALI 1069
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + PA AGLA++YA +TGL QFTVR+ ETE F +VERIN+ K L
Sbjct: 1070 TTTGLMIVLMHGKIPPAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTL 1129
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K +DWP++G + F+N +RY++N PLVL VSF I E IGI
Sbjct: 1130 SLEAPARIKN-----KAPSSDWPQEGEVTFENAEMRYQENLPLVLKKVSFTIKPKEKIGI 1184
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
VGRTG+GKSSL +ALFRLVELS G IKID I+ + L LRS+LS+IPQ+PVLF+G V
Sbjct: 1185 VGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISDIGLADLRSKLSIIPQEPVLFSGTV 1243
|
|
| RGD|70913 Abcc5 "ATP-binding cassette, subfamily C (CFTR/MRP), member 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 147/299 (49%), Positives = 202/299 (67%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PLLI+ ++ H++S R+ +RELKR++N+++SP
Sbjct: 994 QNVILVFFCVGMIAGVFPWFLVAVGPLLILFSVLHIVS---RVLIRELKRLDNITQSPFL 1050
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D+N FL + AMRWLAVR+D+++ IA+
Sbjct: 1051 SHITSSIQGLATIHAYNKRQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLIS-IALI 1109
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + A AGLA++YA +TGL QFTVR+ ETE F +VERIN+ K L
Sbjct: 1110 TTTGLMIVLMHGQIPSAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTL 1169
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K DWP++G I F+N +RYR+N PLVL VSF I E IGI
Sbjct: 1170 SLEAPARIKN-----KAPPHDWPQEGEITFENAEMRYRENLPLVLKKVSFTIKPKEKIGI 1224
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
VGRTG+GKSSL +ALFRLVELS G IKID I+ + L LRS+L++IPQ+PVLF+G V
Sbjct: 1225 VGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISDIGLADLRSKLTIIPQEPVLFSGTV 1283
|
|
| UNIPROTKB|Q9QYM0 Abcc5 "Multidrug resistance-associated protein 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 147/299 (49%), Positives = 202/299 (67%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PLLI+ ++ H++S R+ +RELKR++N+++SP
Sbjct: 994 QNVILVFFCVGMIAGVFPWFLVAVGPLLILFSVLHIVS---RVLIRELKRLDNITQSPFL 1050
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D+N FL + AMRWLAVR+D+++ IA+
Sbjct: 1051 SHITSSIQGLATIHAYNKRQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLIS-IALI 1109
Query: 351 IITGLTVAF-HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409
TGL + HG + A AGLA++YA +TGL QFTVR+ ETE F +VERIN+ K L
Sbjct: 1110 TTTGLMIVLMHGQIPSAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTL 1169
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
E I + K DWP++G I F+N +RYR+N PLVL VSF I E IGI
Sbjct: 1170 SLEAPARIKN-----KAPPHDWPQEGEITFENAEMRYRENLPLVLKKVSFTIKPKEKIGI 1224
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
VGRTG+GKSSL +ALFRLVELS G IKID I+ + L LRS+L++IPQ+PVLF+G V
Sbjct: 1225 VGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISDIGLADLRSKLTIIPQEPVLFSGTV 1283
|
|
| UNIPROTKB|F1MZD4 Bt.104466 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 3.1e-66, P = 3.1e-66
Identities = 146/301 (48%), Positives = 202/301 (67%)
Query: 234 QNMWSMLFAFLMICFVFPWFAL---PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
QN+ + F MI VFPWF + PL+I+ ++ H++S R+ +RELKR++N+++SP
Sbjct: 739 QNVILVFFCVGMIAGVFPWFLVAVGPLVILFSILHIVS---RVLIRELKRLDNITQSPFL 795
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA 350
S+++S++ GL IH ++K Q+F+ R+ E D N + FL + AMRWLAVR+D+++ IA+
Sbjct: 796 SHITSSIQGLATIHAYNKGQEFLHRYQELLDNNQSPFFLFTCAMRWLAVRLDLIS-IALI 854
Query: 351 IITGLTVAF-HGSVSPALAGLALTYA--SHVTGLLQFTVRVFVETELNFLAVERINNCSK 407
TGL + HG + PA AGLA++YA +TGL QFTVR+ ETE F +VERIN+ K
Sbjct: 855 TTTGLMIVLMHGQIPPAYAGLAISYAVQDQLTGLFQFTVRLASETEARFTSVERINHYIK 914
Query: 408 KLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENI 467
L E I + K DWP++G I F+N +RY++N PLVL VSF I E I
Sbjct: 915 TLSLEAPARIKN-----KAPSPDWPQEGEITFENAEMRYQENLPLVLKKVSFTIKPKEKI 969
Query: 468 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527
GIVGRTG+GKSSL +ALFRLVEL G IKID I+ + L LRS+LS+IPQ+PVLF+G
Sbjct: 970 GIVGRTGSGKSSLGMALFRLVELCGGCIKIDGVRISDIGLADLRSKLSIIPQEPVLFSGT 1029
Query: 528 V 528
V
Sbjct: 1030 V 1030
|
|
| ZFIN|ZDB-GENE-050517-25 abcc12 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 133/289 (46%), Positives = 183/289 (63%)
Query: 241 FAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGL 300
F L IC VFP+ + ++I+ ++ I VF+ ++R +KRMENVSRSP S +ST+ GL
Sbjct: 935 FTLLTICIVFPFLLIAVVILGLIFATILYVFQRSIRHMKRMENVSRSPWISLTTSTIQGL 994
Query: 301 HIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVL-AVIAMAIITGLTVAF 359
IH + K Q ++ RF D NS L + RWL+ +DVL A + + + + ++
Sbjct: 995 STIHAYDKRQQYIERFKMLSDNNSNHFMLFNAGTRWLSFWLDVLSATVTLIVSLFVVLSP 1054
Query: 360 HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITS 419
+ +++P+L GLAL+Y +TG+LQF VR+ E E F +VER+ V EG P
Sbjct: 1055 NETINPSLKGLALSYTIQLTGILQFVVRLSTEVEAKFTSVERLLEYITSCVSEG--PRRV 1112
Query: 420 EFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS 479
+ + A WP++GTI FKN S+RYRDN P+VL N++ I GE +GIVGRTG+GKSS
Sbjct: 1113 KDANIP---AGWPQEGTITFKNYSMRYRDNTPIVLDNLNITIRPGEKLGIVGRTGSGKSS 1169
Query: 480 LLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
L VALFRL E + G I IDD DI + L+ LRS+LSVIPQDPVLF G V
Sbjct: 1170 LGVALFRLAEPAEGTILIDDMDICKLGLKDLRSQLSVIPQDPVLFIGTV 1218
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 677 | |||
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-73 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-68 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-64 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-50 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-49 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-43 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-39 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-37 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-36 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-33 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 9e-31 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-30 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-29 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-28 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-27 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-27 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-25 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 9e-25 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-24 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 8e-23 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-22 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-21 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-21 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 9e-21 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-20 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-19 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-19 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-19 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-19 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-18 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-18 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-18 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-18 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-18 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-17 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-17 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-17 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-17 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-17 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-17 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-17 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-17 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-16 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-16 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-16 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-16 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-16 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-16 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-16 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-16 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-16 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-16 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-15 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-15 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-15 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-15 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-15 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-15 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-15 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-14 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-14 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-14 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-14 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-14 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-14 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-13 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-13 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-13 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-13 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-13 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-12 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-12 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-12 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-12 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-12 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-12 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 6e-12 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-12 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-12 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-12 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-11 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-11 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-11 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-11 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-11 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-11 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-11 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-11 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 9e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-10 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-10 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-10 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-10 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-10 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-10 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-10 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-10 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-10 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 8e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 9e-10 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-09 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-09 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-09 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-09 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-09 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-09 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-09 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-09 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-09 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 9e-09 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-09 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-08 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-08 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-08 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-08 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-08 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-08 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-08 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-08 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-08 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-08 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 7e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-07 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-07 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-07 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 3e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-07 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-07 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-07 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 9e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-06 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-06 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-06 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-06 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-06 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-06 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-06 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-06 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-06 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-06 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-06 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-06 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-05 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-05 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-05 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-05 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-05 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-05 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-05 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-05 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-05 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-05 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-05 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-05 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 6e-05 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 7e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-05 | |
| COG2194 | 555 | COG2194, COG2194, Predicted membrane-associated, m | 7e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 7e-05 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 8e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 8e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-05 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-04 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-04 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-04 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-04 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-04 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-04 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-04 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-04 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-04 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-04 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-04 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 5e-04 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-04 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-04 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 6e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-04 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-04 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-04 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-04 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-04 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 7e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 9e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 9e-04 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 9e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 0.001 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 0.001 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.001 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 0.001 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.001 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.001 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 0.001 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 0.001 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 0.002 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 0.002 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.002 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 0.002 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 0.002 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 0.002 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.002 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.002 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.002 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.002 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.002 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 0.003 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 0.003 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 0.003 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.003 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.003 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 0.003 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 0.003 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 0.003 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.003 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 0.003 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.003 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 0.003 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 0.003 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 0.004 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 0.004 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 0.004 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 0.004 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.004 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 0.004 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 235 bits (603), Expect = 2e-73
Identities = 112/273 (41%), Positives = 139/273 (50%), Gaps = 91/273 (33%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G I+FKNVSLRYR N P VL N+SF I GE +GIVGRTG+GKSSLL+ALFRLVELSSG
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK 554
I ID DI+ + L LRSR+S+IPQDPVLF+G
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSG---------------------------- 92
Query: 555 IDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKV 614
T+RS NLDPFG D ELW ALE+ LK V
Sbjct: 93 ------------TIRS------------------NLDPFGEYSDEELWQALERVGLKEFV 122
Query: 615 VTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRKTK----------------------- 649
++ LD+ V+ G+ LS+G++QLLCLARALLRK+K
Sbjct: 123 ESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182
Query: 650 --KKKKSGVNIT-----RPVTSCDKVLVMDNGQ 675
K V +T + D++LV+D G+
Sbjct: 183 REAFKDCTV-LTIAHRLDTIIDSDRILVLDKGR 214
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 9e-68
Identities = 141/422 (33%), Positives = 224/422 (53%), Gaps = 76/422 (18%)
Query: 235 NMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVS 294
++++++ A ++I P A+ + + LY + + + + R+LKR+E+VSRSP++S+ +
Sbjct: 1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFN 1148
Query: 295 STVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITG 354
T+ G+ +I F +++ F+ + + DEN + +A RWLAVR++ + +
Sbjct: 1149 ETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAAL 1208
Query: 355 LTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSK--KLVP- 411
V S+S L GL+++Y+ VT L + VR+ E E N +AVER+ S+ K P
Sbjct: 1209 FAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268
Query: 412 --EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
+ P + WP +G ++F+N LRYR++ LVL +++ I+ GE +GI
Sbjct: 1269 QIQETAPPSG-----------WPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGI 1317
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529
VGRTGAGKSSL + LFR+ E + G+I ID +IA + L LR ++++IPQDPVLF+G
Sbjct: 1318 VGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG--- 1374
Query: 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589
+LR L
Sbjct: 1375 -------------------------------------SLRMNL----------------- 1380
Query: 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRK 647
DPF + D E+W ALE +HLK+ V + KLD + G+ LS+G++QL+CLARALLRK
Sbjct: 1381 -DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439
Query: 648 TK 649
TK
Sbjct: 1440 TK 1441
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 2e-64
Identities = 147/440 (33%), Positives = 219/440 (49%), Gaps = 94/440 (21%)
Query: 231 SVFQNM-----WSMLFAFLMICFVFP---WFALPLLIITTLYHLISKVFRIAVRELKRME 282
+VF NM + +L F++I V W +PLL+ L++ ++ RE+KR++
Sbjct: 1028 AVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLV---LFYGAYLYYQSTAREVKRLD 1084
Query: 283 NVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSM-AMRWLAVRI 341
+++RSP+++ ++GL I + K D + + +N+ L +M + RWLA+R+
Sbjct: 1085 SITRSPVYAQFGEALNGLSTIRAY-KAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRL 1143
Query: 342 DVLAVIAMAIITGLTVAFHGSVSPALA-----GLALTYASHVTGLLQFTVRVFVETELNF 396
+ L + + + V +G A GL L+YA ++T LL +R+ E +
Sbjct: 1144 ETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 1203
Query: 397 LAVERINN-----CSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWP 451
AVER+ LV E P WP G+IKF++V LRYR P
Sbjct: 1204 NAVERVGTYIDLPSEAPLVIENNRPPPG-----------WPSSGSIKFEDVVLRYRPELP 1252
Query: 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511
VL HG LS F+I+
Sbjct: 1253 PVL--------HG-------------------------LS--------FEIS-------- 1263
Query: 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 571
P + V GIVGRTGAGKSS+L ALFR+VEL G+I ID DI+ L LR
Sbjct: 1264 ------PSEKV---GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314
Query: 572 LSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQ 629
L +IPQ PVLF+GT+R+NLDPF +D +LW++LE++HLK + LD++V G+
Sbjct: 1315 LGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374
Query: 630 LSLGEKQLLCLARALLRKTK 649
S+G++QLL LARALLR++K
Sbjct: 1375 FSVGQRQLLSLARALLRRSK 1394
|
Length = 1622 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-50
Identities = 138/507 (27%), Positives = 221/507 (43%), Gaps = 127/507 (25%)
Query: 231 SVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
+ Q ++S+ + L+ P+ + L+ LY+ + + + A RE++R+++V++SP+F
Sbjct: 1078 YLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVF 1137
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRID-----VLA 345
+ + + G I + K ++ + D + +L ++A RWL VR++ V+
Sbjct: 1138 TLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVT 1197
Query: 346 VIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER---- 401
VIA+ + G T+ S L L+LT A T L + VR E + +VER
Sbjct: 1198 VIALIGVIG-TMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYY 1256
Query: 402 INNCSKKLVPEGR-----------------GPITSEFGQVKVKLADWPRQGTIKFKNVSL 444
+ + +PE G + E + G++ F+ V +
Sbjct: 1257 TDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQM 1316
Query: 445 RYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504
RYR+ PLVL VS F IA
Sbjct: 1317 RYREGLPLVLRGVS-----------------------------------------FRIA- 1334
Query: 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564
P++ V GIVGRTG+GKS+LL+ R+VE+ G+I+++ +I +
Sbjct: 1335 -------------PREKV---GIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG 1378
Query: 565 LETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSD 624
L LR + S+IPQDPVLF+GT+R N+DPF E+W ALE L+ +V + +DS
Sbjct: 1379 LRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSR 1438
Query: 625 VQ--GDQLSLGEKQLLCLARALLRKTKKKKKSG--------VNIT--------------- 659
V G S+G++QL+C+ARALL KK SG NI
Sbjct: 1439 VLEGGSNYSVGQRQLMCMARALL-----KKGSGFILMDEATANIDPALDRQIQATVMSAF 1493
Query: 660 ------------RPVTSCDKVLVMDNG 674
V DK++VMD+G
Sbjct: 1494 SAYTVITIAHRLHTVAQYDKIIVMDHG 1520
|
Length = 1560 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 2e-49
Identities = 91/274 (33%), Positives = 125/274 (45%), Gaps = 103/274 (37%)
Query: 431 WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490
WP G I+ +N+S+RY + P VL NVSF++ GE IGIVGRTGAGKS+L++ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS 550
G+I+ID DI+++ LE LRS L++IPQDP LF+G
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG------------------------ 96
Query: 551 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHL 610
T+RS NLDPF D E++ AL S
Sbjct: 97 ----------------TIRS------------------NLDPFDEYSDEEIYGALRVSE- 121
Query: 611 KSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK--------------------- 649
G LS G++QLLCLARALL++ +
Sbjct: 122 ---------------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQK 166
Query: 650 --KKKKSGVNIT------RPVTSCDKVLVMDNGQ 675
+++ + I R + DK+LVMD G+
Sbjct: 167 TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGE 200
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 3e-43
Identities = 108/315 (34%), Positives = 171/315 (54%), Gaps = 30/315 (9%)
Query: 229 LRSVFQN-MWSMLFAFLMICFVFP---WFALPLLIITTLYHLISKVFRIAVRELKRMENV 284
L ++F N +W +L F +I V W +PLLI L++ ++ RE++R+++V
Sbjct: 1027 LMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLI---LFYAAYLYYQSTSREVRRLDSV 1083
Query: 285 SRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAM-RWLAVRIDV 343
+RSPI++ ++GL I + K D + + + +N+ L + + RWL +R++
Sbjct: 1084 TRSPIYAQFGEALNGLSSIRAY-KAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLET 1142
Query: 344 LAVIAMAIITGLTVAFHGSVS-----PALAGLALTYASHVTGLLQFTVRVFVETELNFLA 398
L + + + V +G+ + GL L+Y ++T LL +R + E + +
Sbjct: 1143 LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNS 1202
Query: 399 VERINN-----CSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLV 453
VER+ N + E P++ WP +G+IKF++V LRYR P V
Sbjct: 1203 VERVGNYIDLPSEATAIIENNRPVSG-----------WPSRGSIKFEDVHLRYRPGLPPV 1251
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513
L +SF ++ E +G+VGRTGAGKSS+L ALFR+VEL G+I IDD D+A L LR
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 514 LSVIPQDPVLFNGIV 528
LS+IPQ PVLF+G V
Sbjct: 1312 LSIIPQSPVLFSGTV 1326
|
Length = 1495 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 145 bits (366), Expect = 3e-39
Identities = 67/125 (53%), Positives = 93/125 (74%), Gaps = 2/125 (1%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GI GRTG+GKSSL +A FR+V++ G+I ID DI+ + L TLRSRLS+I QDP+LF+G+
Sbjct: 51 GICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGS 110
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARA 643
IR+NLDP +C D LW+ALE + LK+ V ++ LD+ V G+ S+G++QL CLARA
Sbjct: 111 IRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170
Query: 644 LLRKT 648
+RK+
Sbjct: 171 FVRKS 175
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 5e-37
Identities = 90/221 (40%), Positives = 127/221 (57%), Gaps = 37/221 (16%)
Query: 491 SSGQIKIDDFDIA-SVELETLRSRLS--VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE 547
S G IK +D + L + LS V P + V G+VGRTGAGKSS+L ALFR+VE
Sbjct: 1231 SRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKV---GVVGRTGAGKSSMLNALFRIVE 1287
Query: 548 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEK 607
L G+I IDD D+A L LR LS+IPQ PVLF+GT+R+N+DPF +D +LW+ALE+
Sbjct: 1288 LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALER 1347
Query: 608 SHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRKTK----KKKKSGVNIT-- 659
+H+K + LD++V G+ S+G++QLL LARALLR++K + + V++
Sbjct: 1348 AHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407
Query: 660 -----------------------RPVTSCDKVLVMDNGQAL 677
+ CDK+LV+ +GQ L
Sbjct: 1408 SLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448
|
Length = 1495 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 8e-36
Identities = 106/556 (19%), Positives = 203/556 (36%), Gaps = 115/556 (20%)
Query: 135 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLF 194
LR + + + L ++ + L LL+ + +I + + + +L
Sbjct: 4 LRRLLKYLKYKLLLLAILLLLL-SALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLA 62
Query: 195 AFLMICFVFPWFALPLLIITTLYHLISKVFRSVY-------------------------L 229
+ + L + L +F + +
Sbjct: 63 LLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAV 122
Query: 230 RSVFQNMWSMLF--------AFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRM 281
++ + ++F + +++ + AL LL+I L L+ + R+L R
Sbjct: 123 SNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRR 182
Query: 282 ENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRI 341
+ + + + ++SG+ +I F E ++RF E +E S LA +
Sbjct: 183 VREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLM 242
Query: 342 DVLAVIAMAII--TGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399
+L+ + ++ G + GS++ + Y + + V + A
Sbjct: 243 LLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAA 302
Query: 400 ERINNC--SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANV 457
ER+ + V + P+ G+I+F+N V
Sbjct: 303 ERLFELLDEEPEVEDPPDPL-------------KDTIGSIEFEN---------------V 334
Query: 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517
SF + + + D + E +
Sbjct: 335 SFSYPGKKPV-----------------------------LKDISFSIEPGEKV------- 358
Query: 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 577
IVG +G+GKS+L+ L RL + +SG+I ID DI + L++LR R+ ++ Q
Sbjct: 359 --------AIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410
Query: 578 DPVLFNGTIRYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLG 633
DP+LF+GTIR N+ GR T E+ +AL+ ++ + + D+ V +G LS G
Sbjct: 411 DPLLFSGTIRENIA-LGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469
Query: 634 EKQLLCLARALLRKTK 649
++Q L +ARALLR
Sbjct: 470 QRQRLAIARALLRNPP 485
|
Length = 567 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 2e-33
Identities = 108/407 (26%), Positives = 183/407 (44%), Gaps = 75/407 (18%)
Query: 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFV 313
A+P+ +I + ++ F ++LK++E+ +RSPIFS++ +++ GL I F ++ F
Sbjct: 1031 AIPVAVI---FIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFE 1087
Query: 314 RRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALT 373
F + + ++ FL +RW +RID++ V +T + + + G+ LT
Sbjct: 1088 TLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQ-DGEGEVGIILT 1146
Query: 374 YASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPI--TSEFGQVKVKLAD- 430
A ++ LQ+ V ++ + +V R+ L E P ++ V + +
Sbjct: 1147 LAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFID-LPQEEPRPSGGGGKYQLSTVLVIEN 1205
Query: 431 ------WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
WP G + + ++ +Y + VL ++SF + G+ +G++GRTG+GKS+LL AL
Sbjct: 1206 PHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
Query: 485 FRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
RL+ + G+I+ID SV L+T R VIPQ +F+G
Sbjct: 1266 LRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG------------------ 1306
Query: 545 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDA 604
T R L DP + + D E+W
Sbjct: 1307 ----------------------TFRKNL-----DP-------------YEQWSDEEIWKV 1326
Query: 605 LEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRKTK 649
E+ LKS + KLD + G LS G KQL+CLAR++L K K
Sbjct: 1327 AEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 9e-31
Identities = 43/90 (47%), Positives = 60/90 (66%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+FKNVS Y VL +VS I GE + IVG +G+GKS+LL L RL + +SG+I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNG 526
ID D+ ++LE+LR ++ +PQDP LF+G
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSG 90
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 6e-30
Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 34/182 (18%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG +G+GKS++L LFR ++SSG I ID DI V L++LR + V+PQD VLFN TI
Sbjct: 32 IVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTI 91
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
YN+ +GR D E+ +A + + + K++ D+ V +G +LS GEKQ + +AR
Sbjct: 92 GYNIR-YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIAR 150
Query: 643 ALLRK----------------TKK----------KKKSGVNIT---RPVTSCDKVLVMDN 673
A+L+ T++ K ++ + I + + DK++V+ +
Sbjct: 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKD 210
Query: 674 GQ 675
G+
Sbjct: 211 GR 212
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 2e-29
Identities = 94/445 (21%), Positives = 171/445 (38%), Gaps = 70/445 (15%)
Query: 112 FALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYH 171
A LL + L + V + + S L + L++ L+
Sbjct: 161 LASLLLQLLAL--ATPLFSQIVIDKVLPDASRSTLTVLAIG-----------LLLAALFE 207
Query: 172 LISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLII--TTLYHLISKVF----- 224
+ ++ R+ + + L L F LPL ++ +IS+V
Sbjct: 208 ALLRLLRTYLIAH----LGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQI 263
Query: 225 RSVYLRSVFQNMWSMLFAFLMICFVF---PWFALPLLIITTLYHLISKVFRIAVRELKRM 281
R S+ + +LFA + + +F L +L L LI+ +F+ +R R
Sbjct: 264 REFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRK 323
Query: 282 ENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLF------------- 328
+ S + T+ G+ + E F ++ + + F
Sbjct: 324 LIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIK 383
Query: 329 -----LCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQ 383
L S+ + W + V+ + G VAF+ A + +
Sbjct: 384 SLLQQLSSVLILWFGAIL----VLEGELTLGQLVAFN------------MLAGYFISPIT 427
Query: 384 FTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVS 443
+++ + + +A+ER+ + E K + QG I+F+NVS
Sbjct: 428 RLSQLWTDFQQAKVALERLGDILD---------TPPEQEGDKTLIHLPKLQGEIEFENVS 478
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
RY + P VL ++S I GE + IVGR+G+GKS+LL L L + G+I +D D+
Sbjct: 479 FRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538
Query: 504 SVELETLRSRLSVIPQDPVLFNGIV 528
++L +LR ++ + QDP LF+G +
Sbjct: 539 DIDLASLRRQVGYVLQDPFLFSGSI 563
|
Length = 709 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-28
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 68/181 (37%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
IVG +G+GKS+LL L RL + +SG+I ID D+ ++LE+LR ++ +PQDP LF+
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS 89
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
GTIR N+ LS G++Q + +ARA
Sbjct: 90 GTIRENI---------------------------------------LSGGQRQRIAIARA 110
Query: 644 LLRKTK--------------------------KKKKSGVNIT-RP--VTSCDKVLVMDNG 674
LLR K K+ + I R + D+++V+D+G
Sbjct: 111 LLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
Query: 675 Q 675
+
Sbjct: 171 R 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-27
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 34/181 (18%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG TGAGK++L+ L R + GQI ID DI + ++LRS + V+ QD LF+GTI
Sbjct: 34 IVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTI 93
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
N+ GR D E+ +A +++ ++ + + D+ + G LS GE+QLL +AR
Sbjct: 94 MENIR-LGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIAR 152
Query: 643 ALLR---------------------------KTKKKKKSGVNITRPVT--SCDKVLVMDN 673
A+LR K K + S + R T + DK+LV+D+
Sbjct: 153 AMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDD 212
Query: 674 G 674
G
Sbjct: 213 G 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 8e-27
Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G I+F+NV+ Y + P VL +++F I GE + IVG TGAGK++L+ L R + GQ
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
I ID DI + ++LRS + V+ QD LF+G
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG 91
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 57/126 (45%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
G++GRTG+GKS+LL A RL+ + G I+ID SV L+ R VIPQ +F+GT
Sbjct: 34 GLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGT 92
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARA 643
R NLDP+G+ D E+W E+ LKS + +LD + G LS G KQL+CLAR+
Sbjct: 93 FRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS 152
Query: 644 LLRKTK 649
+L K K
Sbjct: 153 VLSKAK 158
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 9e-25
Identities = 47/94 (50%), Positives = 66/94 (70%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G IK ++ +RY +N VL +V I G+ +GI GRTG+GKSSL +A FR+V++ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
I ID DI+ + L TLRSRLS+I QDP+LF+G +
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSI 111
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 6/103 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++FKNV+ RY + P VL ++S I GE + +VG +G+GKS+L+ + R ++ SG+I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIV------GRTGA 533
ID D+ L +LR ++ ++ QD LFN V GR GA
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGA 103
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 8e-23
Identities = 38/92 (41%), Positives = 53/92 (57%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G I+F+NVS Y + L NVS I GE + I+GR G+GKS+LL L L + +SG
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
+ +D DI ++ LR + +PQD LF G
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYG 92
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
QG I+F+NVS Y L NVS I GE + I+GR G+GKS+LL L L + +
Sbjct: 460 LQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE 519
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG------IVGRTGAGKSSLLVAL 542
G + +D DI ++ LR + +PQDP LF G +G A +L A
Sbjct: 520 GSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAA 575
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 48/127 (37%), Positives = 82/127 (64%), Gaps = 5/127 (3%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +G GKS+++ L R + +SG+I +D DI + L LRS++ ++ Q+PVLF+GTI
Sbjct: 34 LVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTI 93
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
N+ +G+ D E+ +A +K+++ ++++ D+ V +G QLS G+KQ + +AR
Sbjct: 94 AENIR-YGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIAR 152
Query: 643 ALLRKTK 649
ALLR K
Sbjct: 153 ALLRNPK 159
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 2e-21
Identities = 36/92 (39%), Positives = 59/92 (64%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F++V RY+ + P++L N+S RI GE +GIVGR+G+GKS+L + R +G++
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+D D+A + LR ++ V+ Q+ VLFN +
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSI 92
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 9e-21
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
I+GR G+GKS+LL L L + +SG + +D DI ++ LR + +PQD LF GT
Sbjct: 34 AIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGT 93
Query: 586 IRYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCL 640
+R N+ P D + A E + + V + LD + +G LS G++Q + L
Sbjct: 94 LRDNITLGAPLAD--DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVAL 151
Query: 641 ARALLRK 647
ARALL
Sbjct: 152 ARALLND 158
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-20
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 20/161 (12%)
Query: 501 DIASVELETLRSRLSVIPQDPVLFNG------------IVGRTGAGKSSLLVALFRLVEL 548
++EL L + P P + +G I+G +G+GKS+LL L L++
Sbjct: 331 GKPTLELRDLSAGY---PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP 387
Query: 549 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR--CHDTELWDALE 606
G++ +D ++S++ + +R R+SV QD LF+ T+R NL R D ELW ALE
Sbjct: 388 LQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLR-LARPDATDEELWAALE 446
Query: 607 KSHLKSKVVTMRSKLDSDVQGD--QLSLGEKQLLCLARALL 645
+ L + + LD+ + +LS GE+Q L LARALL
Sbjct: 447 RVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALL 487
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 2e-19
Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
I+GR G+GKS+LL L L + + G + +D DI ++ LR + +PQDP LF GT
Sbjct: 495 AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGT 554
Query: 586 IRYNLDPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
+R N+ G + D E+ A E + + V LD + +G LS G++Q + LA
Sbjct: 555 LRDNIA-LGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613
Query: 642 RALLRK 647
RALLR
Sbjct: 614 RALLRD 619
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 6e-19
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 32/181 (17%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
I+GR+G+GKS+LL L + G I ++ +IAS++ + LR +SV+ Q LF+GT+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428
Query: 587 RYNLD-PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARA 643
R NL D ELW AL++ L+ + + L++ + G +LS GE++ L LARA
Sbjct: 429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488
Query: 644 LLRKT--------------------------KKKKKSGVNIT---RPVTSCDKVLVMDNG 674
LL + K+ + +T R + D+++V+DNG
Sbjct: 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548
Query: 675 Q 675
+
Sbjct: 549 K 549
|
Length = 573 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 6e-19
Identities = 71/287 (24%), Positives = 133/287 (46%), Gaps = 38/287 (13%)
Query: 258 LIITTLYHLISKVFRIAVRELKRMENVSRSPIFSN------VSSTVSGLHIIHVFHKEQD 311
LI+ + ++S + R + L+R +S+ S T+ G ++ +F +
Sbjct: 158 LIVVVMLPVLSILMRRVSKRLRR---ISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAY 214
Query: 312 FVRRFCEQYDENSTTLFLCSMAMR----WLAVRIDVLAVIAMAIITGLTVAFHGSVSPAL 367
RRF D S +M M + ++A +A+A++ L +A + + +L
Sbjct: 215 ETRRF----DAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVV--LFIALFQAQAGSL 268
Query: 368 AGLALTYASHVTGLLQFTVRVFVETELN------FLAVERINNCSKKLVPEGRGPITSEF 421
A + + +T ++ + T +N A E + + L+ P +
Sbjct: 269 T--AGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESL--FT--LLDS---PPEKDT 319
Query: 422 GQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481
G ++ A +G ++F+NV+ RY L ++S I GE + +VGR+G+GKS+L+
Sbjct: 320 GTRAIERA----RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLV 375
Query: 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+ R E SGQI +D D+A L +LR +++++ QD VLFN +
Sbjct: 376 NLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTI 422
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 8e-19
Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 5/124 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG TGAGKS+L+ L R+ + SG+I ID DI +V +LR ++V+ QD LFN +I
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
N+ GR D E+ A E++ + D+ V +G QLS GE+Q L +AR
Sbjct: 426 EDNIR-VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIAR 484
Query: 643 ALLR 646
ALL+
Sbjct: 485 ALLK 488
|
Length = 588 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 1e-18
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ NVS Y + VL N+S + GE I ++GR+G+GKS+LL L ++ G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGI----VGRTGAGKSSLLVALFRLVELSSGQ 552
+D ++ +E + L S +SV+ Q P LF+ +GR +G +AL R++ L
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARIL-LQDAP 118
Query: 553 IKIDDFDIASVELETLRSRLSVI 575
I + D ++ T R LS+I
Sbjct: 119 IVLLDEPTVGLDPITERQLLSLI 141
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-18
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+VG +GAGKS+LL L + + G+I+++ D+ + E R ++S + Q+P LF GT
Sbjct: 351 ALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGT 410
Query: 586 IRYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
IR N+ R + E+ AL+++ L V LD+ + G LS G+ Q L LA
Sbjct: 411 IRENI-LLARPDASDEEIIAALDQAGLLE-FVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468
Query: 642 RALLRK 647
RALL
Sbjct: 469 RALLSP 474
|
Length = 559 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 2e-18
Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 437 IKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+FKNVS RY R + P +L +S I G+ + +VG +G GKS+++ L R + +SG+
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
I +D DI + L LRS++ ++ Q+PVLF+G
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDG 91
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 2e-18
Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 20/239 (8%)
Query: 296 TVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIIT-- 353
+V+G+ I E F R+ Q F + I+++ + AI+
Sbjct: 323 SVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWF 382
Query: 354 GLTVAFHGSVSP-ALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERIN---NCSKKL 409
G + G++SP L + A VT + +++ + + +A+ER+ N +
Sbjct: 383 GAHLVIGGALSPGQLVAFNM-LAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
G A +G I F+N+ RY + P VL+N++ I GE IGI
Sbjct: 442 RSAGL-------------AALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGI 488
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
VG +G+GKS+L L RL GQ+ +D D+A + LR ++ V+ Q+ VLF+ +
Sbjct: 489 VGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSI 547
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 3e-18
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 64/219 (29%)
Query: 434 QGTIKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+G +KF+NV+ Y P LVL +VSF L
Sbjct: 9 KGIVKFQNVTFAYP-TRPDTLVLQDVSF-----------------------------TLH 38
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSG 551
G++ +VG +G+GKS+++ L + G
Sbjct: 39 PGEV-----------------------------TALVGPSGSGKSTVVALLENFYQPQGG 69
Query: 552 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD-PFGRCHDTELWDALEKSHL 610
Q+ +D I+ E + L S++S++ Q+PVLF +++ N+ C + +A +K+H
Sbjct: 70 QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA 129
Query: 611 KSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647
S + + S D++V +G QLS G+KQ + +ARAL+R
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 4e-18
Identities = 67/317 (21%), Positives = 124/317 (39%), Gaps = 36/317 (11%)
Query: 226 SVYLRSVFQNMWSMLFAFLMICFVFPWFALPL-------LIITTLYHLISKVFRIAVREL 278
++YLR + + L ++ +F++PL L++ L +I +F A R+
Sbjct: 130 NLYLRVIAPAV-VALVLIAVVTIGLSFFSIPLALLLGLILLLLLL--IIPTLFYRAGRKF 186
Query: 279 KRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLA 338
R+ + S + V G + +F E + + +
Sbjct: 187 GAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYR----TALEATEASWLKAQRKQARFT 242
Query: 339 VRIDVLA-VIAMAIITGLTVAF-----HGSVSPALAGLALTYASHVTGLLQFT---VRVF 389
D + +IA ++ GL + G+++ A LAL L F F
Sbjct: 243 GLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVI--FAALEAFEPLAPGAF 300
Query: 390 VETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN 449
+ R+N+ + + + +T Q ++ +NVS Y
Sbjct: 301 QHLGQVIASARRLND-----ILDQKPEVTFPDEQTATT------GQALELRNVSFTYPGQ 349
Query: 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 509
L N + + GE + I+GR+G+GKS+LL L + G I ++ +IAS++ +
Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQA 409
Query: 510 LRSRLSVIPQDPVLFNG 526
LR +SV+ Q LF+G
Sbjct: 410 LRETISVLTQRVHLFSG 426
|
Length = 573 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 4e-18
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+G ++F +VS Y DN + +VSF G+ + IVG TGAGKS+L+ L R+ + SG
Sbjct: 332 KGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GI-----VGRTGAGKSSLLVALFR 544
+I ID DI +V +LR ++V+ QD LFN I VGR A + A R
Sbjct: 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAER 447
|
Length = 588 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+S Y + L +VS IN GE + ++G +GAGKS+LL L LVE +SG +
Sbjct: 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 497 IDDFDIASV---ELETLRSRLSVIPQDP-------VLFNGIVGRTGAGKSSLLVALFRLV 546
ID DI + L LR ++ +I Q VL N + GR G+ S +LF L
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--LGRRSTWRSLFGLF 117
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-17
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+ +N+S RY L NVS + GE + +VG G+GKS+LL A+ L++ +SG+I I
Sbjct: 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 498 DDFDIASVELETLRSRLSVIPQ 519
D DIA + LE LR R+ +PQ
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 1e-17
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 5/126 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
IVG +GAGKS++L LFR +++SG I ID DI V ++LR + ++PQD VLFN T
Sbjct: 293 AIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDT 352
Query: 586 IRYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
I YN+ +GR E+ A E + + + ++ D+ V +G +LS GEKQ + +A
Sbjct: 353 IAYNIK-YGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411
Query: 642 RALLRK 647
R +L+
Sbjct: 412 RTILKN 417
|
Length = 497 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ KN+S Y L +V+ IN GE + I+G +GAGKS+LL +L LV+ +SG+I
Sbjct: 4 IEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 497 IDDFDIA---SVELETLRSRLSVIPQDP-------VLFNGIVGRTG 532
+ I EL LR + +I Q VL N ++GR G
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108
|
Length = 258 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 3e-17
Identities = 35/90 (38%), Positives = 56/90 (62%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +NVS RY P VL NVSF I GE++ I+G +G+GKS+L + L+ +SG+++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNG 526
+D DI+ + L + +PQD LF+G
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSG 90
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 4e-17
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
+N+S+ Y VL ++S I GE +GI+G GAGKS+LL L L++ SSG+I +D
Sbjct: 3 ENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 500 FDIASVELETLRSRLSVIPQ 519
D+AS+ + L +++ +PQ
Sbjct: 61 KDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 5e-17
Identities = 77/310 (24%), Positives = 129/310 (41%), Gaps = 23/310 (7%)
Query: 226 SVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVS 285
S+ LR N + +M+ P +L+ L L +F VR+L R
Sbjct: 137 SMALR----NALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDR 192
Query: 286 RSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLA 345
+ S T+ + + F E RF ++ +R A+ ++
Sbjct: 193 IADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEA---ARQRIRTRALLTAIVI 249
Query: 346 VIAMAIITGLTVA-----FHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVE 400
V+ I G+ G +S G + YA V G + V+ E + A E
Sbjct: 250 VLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAE 309
Query: 401 RINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRY--RDNWPLVLANVS 458
R+ + P+ + P K P +G I+F+ V+ Y R + P L ++
Sbjct: 310 RLIELLQA-EPDIKAPAHP-------KTLPVPLRGEIEFEQVNFAYPARPDQP-ALDGLN 360
Query: 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518
+ GE + +VG +GAGKS+L L R + SG+I +D D+ ++ LR+R++++P
Sbjct: 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVP 420
Query: 519 QDPVLFNGIV 528
QDPVLF V
Sbjct: 421 QDPVLFAASV 430
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 7e-17
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
++ KN+S+ + L +VSF I GE +G+VG +G+GKS+L A+ L++ +SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 495 IKIDDFDIASV---ELETLRSRLSVIPQDP 521
I D D+ + + R + ++ QDP
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP 91
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 7e-17
Identities = 82/334 (24%), Positives = 139/334 (41%), Gaps = 40/334 (11%)
Query: 220 ISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPW----FALPLLIITTLYHLISKVFRIAV 275
I ++ L ++ ++++L LM F + W A+ L ++ L+ + + V
Sbjct: 245 IRRILSGSTLTTLLSGIFALLNLGLM--FYYSWKLALVAVALALVAIAVTLVLGLLQ--V 300
Query: 276 RELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMR 335
R+ +R+ +S I ++G+ + V E R+ + +
Sbjct: 301 RKERRLLELS-GKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359
Query: 336 WLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAG-LALTYASHVTGLLQFTVRVFVETEL 394
L V VL V+ A + ++ G +L LA A G V T +
Sbjct: 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAF---GSFSGAVTQLSNTLI 416
Query: 395 NFLAV----ERINNCSKKLVPEGRGPI---TSEFGQVKV---KLADWPRQGTIKFKNVSL 444
+ LAV ER PI E + K KL G I+ V+
Sbjct: 417 SILAVIPLWERAK------------PILEALPEVDEAKTDPGKL-----SGAIEVDRVTF 459
Query: 445 RYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504
RYR + PL+L +VS +I GE + IVG +G+GKS+LL L SG + D D+A
Sbjct: 460 RYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519
Query: 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSL 538
++++ +R +L V+ Q+ L +G + AG + L
Sbjct: 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL 553
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-16
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 499 DFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558
F + L S VI + +VGR+G+GKS+L+ + R E SGQI +D
Sbjct: 337 TFRYPGRDRPALDSISLVIEPGETV--ALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394
Query: 559 DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHD---TELWDALEKSHLKSKVV 615
D+A L +LR +++++ QD VLFN TI N+ +GR E+ AL ++ + V
Sbjct: 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNI-AYGRTEQADRAEIERALAAAYAQDFVD 453
Query: 616 TMRSKLDSDV--QGDQLSLGEKQLLCLARALLR 646
+ LD+ + G LS G++Q L +ARALL+
Sbjct: 454 KLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-16
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 422 GQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481
G + I +N+S RY D P L++++ I G+ +VG +GAGKS+LL
Sbjct: 306 GSGEKAEVANEPPIEISLENLSFRYPDGKP-ALSDLNLTIKAGQLTALVGASGAGKSTLL 364
Query: 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
L + + G+I+++ D+ + E R ++S + Q+P LF G
Sbjct: 365 NLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG 409
|
Length = 559 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N+S Y +L ++SF I GE GI+G G+GKS+LL L L++ SG++
Sbjct: 3 LEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGI 527
+D DIAS+ + L +L+ +PQ P G+
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91
|
Length = 258 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-16
Identities = 34/95 (35%), Positives = 49/95 (51%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
Q ++ NVS Y D VL +S +I GE + ++GRTG GKS+LL L R +
Sbjct: 334 ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
G+I ++ IA LR +SV+ Q LF+
Sbjct: 394 QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA 428
|
Length = 574 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 429 ADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488
+++F VS+ Y P L VSF + GE + +VG +GAGKS+LL L V
Sbjct: 314 VTAAPAPSLEFSGVSVAYPGRRP-ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372
Query: 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+ + G I ++ +A + ++ R +++ +PQ P LF G +
Sbjct: 373 DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI 412
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-16
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 41/185 (22%)
Query: 527 IVGRTGAGKSSLLVALFRLVELS-SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+VG +GAGK+SLL AL L L G +KI+ ++ ++ E+ R LS + Q+P L +GT
Sbjct: 381 LVGPSGAGKTSLLNAL--LGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGT 438
Query: 586 IRYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQ---LSLGEKQLLC 639
+R N+ +P D +L ALE + + + + LD+ + GDQ LS+G+ Q L
Sbjct: 439 LRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPI-GDQAAGLSVGQAQRLA 495
Query: 640 LARALLRKTK--------------------------KKKKSGVNITR---PVTSCDKVLV 670
LARALL+ + ++++ + +T + D++ V
Sbjct: 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWV 555
Query: 671 MDNGQ 675
M +GQ
Sbjct: 556 MQDGQ 560
|
Length = 588 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-16
Identities = 70/341 (20%), Positives = 130/341 (38%), Gaps = 42/341 (12%)
Query: 227 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLIS-----KVFRIAVRELKRM 281
+Y+R + +++ + + ++P +I L++ V A R ++
Sbjct: 126 LYVRVIVPAGVALVVGAAAVAAIA-VLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQA 184
Query: 282 ENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVR- 340
R + + ++ + G + + + E + T A A+
Sbjct: 185 LARLRGELAAQLTDALDGAAELVASGALPAALAQVEEA--DRELTRAERRAA-AATALGA 241
Query: 341 -IDVLA---VIAMAIITGLTVAFHGSVSPA------LAGLALTYA-SHVTGLLQFTVRVF 389
+ +LA + A+ G G ++P L LA A + + Q RV
Sbjct: 242 ALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVR 301
Query: 390 VETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN 449
A ERI +++ P T++ +++S Y
Sbjct: 302 A-------AAERIV----EVLDAAGPVAEGSAPAAGAVGLGKP---TLELRDLSAGYPGA 347
Query: 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 509
P VL VS + GE + I+G +G+GKS+LL L L++ G++ +D ++S++ +
Sbjct: 348 -PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDE 406
Query: 510 LRSRLSVIPQDPVLF------NGIVGRTGAGKSSLLVALFR 544
+R R+SV QD LF N + R A L AL R
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALER 447
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 57/217 (26%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N+S Y + L N++ IN GE + I+G +GAGKS+LL + RLVE SSG I
Sbjct: 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 497 IDDFDIASV---ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553
++ DI + +L LR R+ +I Q +N ++ R
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQH---YN-LIERL---------------------- 94
Query: 554 KIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTEL-WDALEKSHLKS 612
+V L RL + T R L F D E ALE+ L
Sbjct: 95 --------TVLENVLHGRLG--------YKPTWRSLLGRFSE-EDKERALSALERVGLAD 137
Query: 613 KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
K + + DQLS G++Q + +ARAL ++
Sbjct: 138 K---------AYQRADQLSGGQQQRVAIARALAQQPD 165
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 4e-16
Identities = 65/227 (28%), Positives = 119/227 (52%), Gaps = 22/227 (9%)
Query: 434 QGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+G I+ +V+ RY R N P + +++F + + IVG TG+GKS+++ L R +L
Sbjct: 1163 KGKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221
Query: 492 SGQIKIDDF----DIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE 547
+ + D+ + + +V ++ F+ + G+G+ S +F+
Sbjct: 1222 NDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS-LTKEGGSGEDS---TVFK--- 1274
Query: 548 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWD---A 604
+SG+I +D DI L+ LR+ S++ Q+P+LFN +I N+ FG+ D D A
Sbjct: 1275 -NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK-FGK-EDATREDVKRA 1331
Query: 605 LEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK 649
+ + + + ++ +K D++V G LS G+KQ + +ARALLR+ K
Sbjct: 1332 CKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPK 1378
|
Length = 1466 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 5e-16
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 25/152 (16%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GIVGR+G+GKS+L + R +G++ +D D+A + LR ++ V+ Q+ VLFN +
Sbjct: 32 GIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRS 91
Query: 586 IRYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCL 640
IR N+ DP L +H + + D+ V QG LS G++Q + +
Sbjct: 92 IRDNIALADPGMSMERVIEAAKLAGAH--DFISELPEGYDTIVGEQGAGLSGGQRQRIAI 149
Query: 641 ARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
ARAL I P ++L+ D
Sbjct: 150 ARAL-------------IHNP-----RILIFD 163
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-16
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
++GRTG GKS+LL L R + G+I ++ IA LR +SV+ Q LF+ T+
Sbjct: 371 LLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATL 430
Query: 587 RYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLA 641
R NL P D L + L++ L K++ L++ + G QLS GE++ L +A
Sbjct: 431 RDNLLLAAP--NASDEALIEVLQQVGL-EKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA 487
Query: 642 RALLR 646
RALL
Sbjct: 488 RALLH 492
|
Length = 574 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 6e-16
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+VG +GAGKS+LL L V+ + G I ++ +A + ++ R +++ +PQ P LF GT
Sbjct: 352 ALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGT 411
Query: 586 IRYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
I N+ R D E+ +ALE++ L V + LD+ + G LS G+ Q L LA
Sbjct: 412 IAENIR-LARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALA 470
Query: 642 RALLR 646
RA LR
Sbjct: 471 RAFLR 475
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 9e-16
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 7/160 (4%)
Query: 490 LSSGQIKIDDFDIASVELETLRSRLSV-IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL 548
L SG+I ID+ A + + +++ +P F +VG TG+GKS+L L L
Sbjct: 336 LQSGRIDIDNVSFAYRDDNLVLQNINLSVP--SRGFVALVGHTGSGKSTLASLLMGYYPL 393
Query: 549 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR-CHDTELWDALEK 607
+ G+I++D ++S+ LR ++++ QDPV+ T N+ GR + ++W ALE
Sbjct: 394 TEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANV-TLGRDISEEQVWQALET 452
Query: 608 SHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645
L ++ L + + QG+ LS+G+KQLL LAR L+
Sbjct: 453 VQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV 492
|
Length = 592 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 57/277 (20%), Positives = 101/277 (36%), Gaps = 105/277 (37%)
Query: 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+ KN+S Y D L ++S I GE + IVG G+GKS+L
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTL----------------- 43
Query: 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557
LR L NG++G T SG++ +D
Sbjct: 44 ------------LR-----------LLNGLLGPT------------------SGEVLVDG 62
Query: 558 FDIASVELETLRSRLSVIPQDP--VLFNGTIR----YNLDPFGRCHDTELWDALEKSHLK 611
D+ + L+ LR ++ ++ Q+P F T+ + L+ G + + E+
Sbjct: 63 KDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEE----EIEERVEEA 118
Query: 612 SKVVTMRSKLDSDVQGDQLSLGEKQLLCLA---------------------------RAL 644
++V + D LS G+KQ + +A L
Sbjct: 119 LELVGLEGLRDRSPF--TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 645 LRKTKKKKKSGVNIT------RPVTSCDKVLVMDNGQ 675
L+K K + K+ + +T + D+V+V+++G+
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLLLEL--ADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-15
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
R G + F NVS Y P +L +SF I G+ + IVG +GAGKS++L LFR +++S
Sbjct: 259 RLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
G I ID DI V ++LR + ++PQD VLFN
Sbjct: 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN 350
|
Length = 497 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-15
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 34/182 (18%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +GAGKS+L L R + SG+I +D D+ ++ LR+R++++PQDPVLF ++
Sbjct: 371 LVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASV 430
Query: 587 RYNLDPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
N+ +GR D E+ A +H + + D+ + +G LS G++Q + +AR
Sbjct: 431 MENIR-YGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIAR 489
Query: 643 ALLRKTK---------------------------KKKKSGVNITRPVT--SCDKVLVMDN 673
A+L+ K + + + R T D+++VMD
Sbjct: 490 AILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQ 549
Query: 674 GQ 675
G+
Sbjct: 550 GR 551
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 2e-15
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+S RY L ++S + GE G++G GAGK++L+ + L++ SG+IK
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+ DI E E ++ R+ +P++P L+
Sbjct: 59 VLGKDIKK-EPEEVKRRIGYLPEEPSLY 85
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-15
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 66/178 (37%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
++GR+G+GKS+LL L ++ G+I +D ++ +E + L S +SV+ Q P LF+ T+
Sbjct: 33 LLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE-KALSSLISVLNQRPYLFDTTL 91
Query: 587 RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLR 646
R NL G + S GE+Q L LAR LL+
Sbjct: 92 RNNL------------------------------------GRRFSGGERQRLALARILLQ 115
Query: 647 ----------------KTKK----------KKKSGVNIT---RPVTSCDKVLVMDNGQ 675
T++ K K+ + IT + DK+L ++NG+
Sbjct: 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGK 173
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 72/283 (25%), Positives = 107/283 (37%), Gaps = 107/283 (37%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS---LLVALFRLVE 489
+ IK +NVS Y ++ L NVSF IN GE + I+G G+GKS+ +L L +
Sbjct: 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--- 60
Query: 490 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS 549
SG+IKID I+ L+ +R ++ +I Q+P N +G T VE
Sbjct: 61 PQSGEIKIDGITISKENLKEIRKKIGIIFQNPD--NQFIGAT--------------VE-- 102
Query: 550 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG---RCHD-TELWDAL 605
D DIA FG + ++ D +
Sbjct: 103 ------D--DIA-------------------------------FGLENKKVPPKKMKDII 123
Query: 606 EKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL--------------------- 644
+ +K V M LD + Q LS G+KQ + +A L
Sbjct: 124 DDL---AKKVGMEDYLDKEPQ--NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178
Query: 645 ---------LRKTKKKKKSGVNITR---PVTSCDKVLVMDNGQ 675
LR K +KK+ ++IT DKV+V G+
Sbjct: 179 REIKKIMVDLR--KTRKKTLISITHDMDEAILADKVIVFSEGK 219
|
Length = 271 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 42/186 (22%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G++G GAGK++LL L L++ +SG+I + +D+ E +R R+ +PQ+P L+
Sbjct: 35 GLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYVPQEPSLYPEL 93
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
T+R NL+ F R + +A E+ ++ + K + V LS G KQ L +A AL
Sbjct: 94 TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV--RTLSGGMKQRLSIALAL 151
Query: 645 LRK-------------------------TKKKKKSGVNITRPVTS----------CDKVL 669
L + K+ GV I + S CD+V+
Sbjct: 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI---LLSTHILEEAEELCDRVI 208
Query: 670 VMDNGQ 675
++++G+
Sbjct: 209 ILNDGK 214
|
Length = 293 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-15
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 437 IKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I+ +NVS + L +VS I GE GI+G +GAGKS+LL + L +SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 494 QIKIDDFDIASV---ELETLRSRLSVIPQDPVLFN 525
+ +D D+ ++ EL LR ++ +I Q L +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS 96
|
Length = 339 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-14
Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG TGAGK++L+ L R+ + + GQI ID DI +V E+LR ++ + QD LFN +I
Sbjct: 366 IVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSI 425
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
R N+ GR D E+++A + + ++ + D+ V +G++LS GE+Q L +AR
Sbjct: 426 RENIR-LGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484
Query: 643 ALLR 646
A+L+
Sbjct: 485 AILK 488
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
GI+G G+GKS+LL L L++ SG++ +D DIAS+ + L +L+ +PQ P
Sbjct: 30 ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKS-----KVVTMRSKLDSDVQGDQLSLGEKQLL 638
G Y L GR L+ K + +++ + D V D+LS GE+Q +
Sbjct: 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--DELSGGERQRV 147
Query: 639 CLARALLRKTK 649
+ARAL ++T
Sbjct: 148 LIARALAQETP 158
|
Length = 258 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I+ +N++ +Y + L VSF + GE G++G GAGK++LL L L++ +SG+I
Sbjct: 4 VIEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLF 524
+ +D+ E +R R+ +PQ+P L+
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLY 90
|
Length = 293 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-14
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 536 SSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593
S+LL + L++ +SG I +D D + + LR R+ V+ QDP LF T+R NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 594 GRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
R + +ALE+ L + LS G+KQ + +ARALL+K K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP--------VGTLSGGQKQRVAIARALLKKPK 110
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F+NVS Y L +VSF I GE + + G +GAGKS+LL ++ + G+I
Sbjct: 2 IRFENVSKAYP-GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 497 IDDFDIASV---ELETLRSRLSVIPQD 520
++ D++ + E+ LR ++ V+ QD
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQD 87
|
Length = 223 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 4e-14
Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 83/209 (39%)
Query: 512 SRLSVIPQD---PVLFN-----------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557
+S PVL N I+G +G+GKS+L + L+ +SG++++D
Sbjct: 4 ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 558 FDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTM 617
DI+ + L + +PQD LF+G+I N+
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------- 96
Query: 618 RSKLDSDVQGDQLSLGEKQLLCLARAL---------------------------LRKTKK 650
LS G++Q L LARAL + K
Sbjct: 97 ------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA 144
Query: 651 KKKSGVNIT-RP--VTSCDKVLVMDNGQA 676
+ + I RP + S D++LV+++G+
Sbjct: 145 AGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 5e-14
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ KNVS RY VL +VS I GE + ++G +G+GKS+LL + L E SG I
Sbjct: 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 497 IDDFDIASVELET--LRSRLSVIPQDPVLFN 525
ID D+ +E E LR R+ ++ QD LF
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 6e-14
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+FK VS Y +L ++S + G IVG +GAGKS+L+ + RL++ + G I
Sbjct: 4 IEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
ID DI ++++ LR ++ ++ Q P LF G V
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTV 93
|
Length = 241 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 2e-13
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G ++F++++ + ++ V +VSF G+ + IVG TGAGK++L+ L R+ + + GQ
Sbjct: 333 GAVEFRHITFEFANSSQGVF-DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV------GRTGAGKSSLLVA 541
I ID DI +V E+LR ++ + QD LFN + GR GA + A
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEA 444
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 5e-13
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIAS--VELETLR 569
IP+ + ++G +G GKS+LL L RL +L G++ +D DI V++ LR
Sbjct: 23 IPKGEIT--ALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80
Query: 570 SRLSVIPQDPVLFNGTIRYNLDPFG----RCHDTELWDALEKSHLKSKVVTMRSKLDSDV 625
R+ ++ Q P F G+I N+ +G E D + L+ + ++ +
Sbjct: 81 RRVGMVFQKPNPFPGSIYDNVA-YGLRLHGIKLKEELDERVEEALRK--AALWDEVKDRL 137
Query: 626 QGDQLSLGEKQLLCLARAL 644
LS G++Q LCLARAL
Sbjct: 138 HALGLSGGQQQRLCLARAL 156
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-13
Identities = 31/92 (33%), Positives = 58/92 (63%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+G I+F+NV+ Y L N++F+I G+ + +VGR+G+GKS++ L R ++ G
Sbjct: 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
+I +D D+ L +LR++++++ Q+ LFN
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFN 430
|
Length = 582 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 6e-13
Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG +G+GKS+L L + SG+I ++ F + ++ TLR ++ +PQ+P +F+G+I
Sbjct: 505 IVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564
Query: 587 RYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSD--VQGDQLSLGEKQLLCLAR 642
NL + + + E+W A E + +K + M ++ +G +S G+KQ + LAR
Sbjct: 565 LENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624
Query: 643 ALLRKTK 649
ALL +K
Sbjct: 625 ALLTDSK 631
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 8e-13
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F+NVS RY + + +V+ I GE + ++G +G+GK++ L + RL+E +SG+I
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
ID DI+ ++ LR ++ + Q LF
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLF 87
|
Length = 309 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 1e-12
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I+ KN+S + D VL +S + GE + I+G +G+GKS+LL L L E SG I
Sbjct: 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 496 KIDDFDI-ASVELETLRSRLSVIPQDPVLF 524
+D D+ ++ LR ++ ++ Q LF
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89
|
Length = 240 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 1e-12
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N++ Y+ + ++S + GE G++G GAGK++ L L + +SG
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530
I+ + I + + + R L PQ LF+ + R
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVR 93
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-12
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 52/126 (41%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
+VG G+GKS+LL A+ L++ +SG+I ID DIA + LE LR R+ +P
Sbjct: 27 IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP------- 79
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
QLS G++Q + LARA
Sbjct: 80 ---------------------------------------------QLSGGQRQRVALARA 94
Query: 644 LLRKTK 649
LL
Sbjct: 95 LLLNPD 100
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 3e-12
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 41/129 (31%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
GI+G GAGKS+LL L L++ SSG+I +D D+AS+ + L +++ +PQ
Sbjct: 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ------ 80
Query: 584 GTIRYNLDPFGRCHDTELWDALEK---SHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCL 640
ALE +HL + +LS GE+Q + L
Sbjct: 81 --------------------ALELLGLAHLADRPFN------------ELSGGERQRVLL 108
Query: 641 ARALLRKTK 649
ARAL ++
Sbjct: 109 ARALAQEPP 117
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F+NV+ RY V N++ I GE + ++G +G+GK++ + + RL+E +SG+I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
ID DI + LR ++ + Q LF
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLF 87
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 5e-12
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 416 PITSEFGQVKVKLADWPRQGTIKFKNVSLRYR-------DNWPLVLA--NVSFRINHGEN 466
+ E + + + +N+S RY V A +VSF + GE
Sbjct: 260 RLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGET 319
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKID--DFDIASVELETLRSRLSVIPQDP 521
+G+VG +G+GKS+L L L+ SSG I D D D+ EL LR R+ ++ QDP
Sbjct: 320 LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP 376
|
Length = 539 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ + ++ + VL V + GE + I+G +G+GKS+LL + L+ SG++
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 497 IDDFDIASV---ELETLRSRLSVIPQDPVLFN 525
ID DI+ + EL LR R+ ++ Q LF+
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-12
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 445 RYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504
Y L NV+F + G+ +GI G TG+GKS+LL + R ++S G I+ D +
Sbjct: 322 TYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTK 381
Query: 505 VELETLRSRLSVIPQDPVLFNGIVG 529
++L++ RSRL+V+ Q P LF+ V
Sbjct: 382 LQLDSWRSRLAVVSQTPFLFSDTVA 406
|
Length = 569 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 7e-12
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 23/127 (18%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG +GAGKS+L+ + RL++ + G I ID DI ++++ LR ++ ++ Q P LF GT+
Sbjct: 34 IVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTV 93
Query: 587 RYNLDPFG------RCHDTELW---DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
+ N++ +G + D E + L K + V LS GE Q
Sbjct: 94 KDNIE-YGPMLKGEKNVDVEYYLSIVGLNKEYATRDV-------------KNLSGGEAQR 139
Query: 638 LCLARAL 644
+ +AR L
Sbjct: 140 VSIARTL 146
|
Length = 241 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 7e-12
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 437 IKFKNVSLRYRDNWPLV--LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL---- 490
I+ KNVS + D V L +VS + GE GI+GR+GAGKS+L+ R +
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLI----RCINGLERP 57
Query: 491 SSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLFNGIVGRTGAG 534
+SG + +D D+ + EL R R+ +I Q FN + RT
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQH---FNLLSSRTVFE 101
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 7e-12
Identities = 39/125 (31%), Positives = 75/125 (60%), Gaps = 5/125 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +G+GKS++ L L + + GQ+ +D + + L +++++ Q+PVLF+G++
Sbjct: 512 LVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSV 571
Query: 587 RYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
R N+ +G D E+ A + ++ ++ + D++V +G QLS G+KQ + +AR
Sbjct: 572 RENI-AYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630
Query: 643 ALLRK 647
AL+RK
Sbjct: 631 ALVRK 635
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 436 TIKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
+IK +N++ Y + P L NV+ I GE +G++G TG+GKS+L+ L L++ +S
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 493 GQIKIDDFDIA--SVELETLRSRLSVIPQDP 521
G+I ID DI V+L +R ++ ++ Q P
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92
|
Length = 287 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 1e-11
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 26/228 (11%)
Query: 437 IKFKNVSLRYRDNWPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I+FKNV Y + + +++F + G+ VG +G GKS++L + RL + + G I
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 496 KIDD-FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS--SGQ 552
I+D ++ + L+ RS++ V+ QDP+LF+ + K+++ +L+ L +L S
Sbjct: 443 IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSI------KNNIKYSLYSLKDLEALSNY 496
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH---------DTELWD 603
D D E R S + N D D+E+ D
Sbjct: 497 YNEDGND----SQENKNKRNSCRAKCAGDLNDMSN-TTDSNELIEMRKNYQTIKDSEVVD 551
Query: 604 ALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK 649
+K + V + K ++ V +LS G+KQ + +ARA++R K
Sbjct: 552 VSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPK 599
|
Length = 1466 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ KN+ + D VL + + GE + I+G +G+GKS+LL + L E SG I
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 497 IDDFDI--ASVELETLRSRLSVIPQDPVLF 524
ID + + LR ++ ++ Q LF
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLF 88
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+S RY L +VS I GE + ++G G+GKS+LL L L++ +SG++
Sbjct: 4 IEAENLSFRY-PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 497 IDDFDIASVE-LETLRSRLSVIPQDP 521
+D D +S + L LR ++ ++ Q+P
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNP 88
|
Length = 235 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-11
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 5/124 (4%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GI G TG+GKS+LL + R ++S G I+ D + ++L++ RSRL+V+ Q P LF+ T
Sbjct: 345 GICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404
Query: 586 IRYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
+ N+ GR T E+ + + ++ + D++V +G LS G+KQ + +A
Sbjct: 405 VANNI-ALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIA 463
Query: 642 RALL 645
RALL
Sbjct: 464 RALL 467
|
Length = 569 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F NVS Y L +VS I GE + + G +GAGK++LL L+ + S GQ++
Sbjct: 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 497 IDDFDIASV---ELETLRSRLSVIPQD 520
I D+ + +L LR R+ V+ QD
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQD 87
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 440 KNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLV-----ELSS 492
KN+S+ + + +V A VSF + GE +GIVG +G+GKS L A+ L+ +
Sbjct: 5 KNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVG 64
Query: 493 GQIKIDDFDIASV---ELETLR-SRLSVIPQDP 521
G+I D D+ S+ EL +R +++I QDP
Sbjct: 65 GEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97
|
Length = 316 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 11/100 (11%)
Query: 437 IKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE----L 490
++ +N+++ + + +VSF + GE +GIVG +G+GKS+L +AL L+ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 491 SSGQIKIDDFDIASV---ELETLR-SRLSVIPQDPV-LFN 525
+SG++ +D D+ + E+ LR R+++I QDP+ N
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLN 105
|
Length = 539 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ K +S Y L ++S + GE + ++G +G GK++LL + L SG+I
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
ID D+ V E R + ++ QD LF
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALF 84
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N++ RY L VS + G G++G GAGK++L+ L L SSG I+
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 497 IDDFDIASVELETLRSRLSVIPQDP 521
ID D+ + + LR R+ +PQ+
Sbjct: 58 IDGQDV-LKQPQKLRRRIGYLPQEF 81
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 4e-11
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F NV+ Y + L ++ I+ GE + +VG +GAGKS+LL +++ +SG I+
Sbjct: 1 IEFINVTKTYPNGTA-ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 497 IDDFDIASV---ELETLRSRLSVIPQD 520
++ D++ + + LR ++ V+ QD
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQD 86
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 4e-11
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+ KN+S + + A NVS I GE G++G +GAGKS+L+ + L +SG+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 495 IKIDDFDIASV---ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL-FRLVELSS 550
+ +D D+ ++ EL R ++ +I Q FN + RT VAL L
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQH---FNLLSSRTVFDN----VALPLELAGTPK 114
Query: 551 GQIK 554
+IK
Sbjct: 115 AEIK 118
|
Length = 343 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 436 TIKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+ +N+S+ Y L NVS I GE +GIVG +G+GKS+L L L + SSG
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 494 QIKIDDFDIASVELETLRSR-LSVIPQDP 521
I +D +A + R + ++ QDP
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDP 91
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 7e-11
Identities = 58/214 (27%), Positives = 80/214 (37%), Gaps = 47/214 (21%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I +N+SL Y D +L NVS +N GE IG+VGR GAGKS+LL L +E SG++
Sbjct: 3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR--TGAGKSSLLVALFRLVELSSGQI 553
+ R+ + Q+P L G L L L E + +
Sbjct: 61 TRP----KGL-------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA--L 107
Query: 554 KIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSK 613
D D ELE L L D +A + L
Sbjct: 108 LADPDDELLAELEALLEEL-------------------------DGWTLEARAEEALLGL 142
Query: 614 VVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRK 647
+ S LS G ++ + LARALL +
Sbjct: 143 GFPDEDRPVSS-----LSGGWRRRVALARALLEE 171
|
Length = 530 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I +NVS Y +VL +VS I G I+G GAGKS+LL + RL++ SG+I
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 497 IDDFDIASVELETLRSRLSVIPQD 520
ID ++ S + L +LS++ Q+
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQE 83
|
Length = 252 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 9e-11
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 417 ITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAG 476
+ SEF K + G I +VS Y +L+++S I IVG +G+G
Sbjct: 454 VDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSG 512
Query: 477 KSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
KS+L L + SG+I ++ F + ++ TLR ++ +PQ+P +F+G +
Sbjct: 513 KSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 1e-10
Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 68/196 (34%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
IVG G+GKSSLL AL +E SG + ++ ++ + Q+P + N
Sbjct: 33 LVAIVGPVGSGKSSLLSALLGELEKLSGSV-------------SVPGSIAYVSQEPWIQN 79
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ----GDQ---------L 630
GTIR N+ FG+ D E ++ KV+ L+ D++ GD L
Sbjct: 80 GTIRENI-LFGKPFDEERYE---------KVIK-ACALEPDLEILPDGDLTEIGEKGINL 128
Query: 631 SLGEKQLLCLARALLRKTK----------------------------KKKKSGVNITRPV 662
S G+KQ + LARA+ K+ + +T +
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188
Query: 663 ---TSCDKVLVMDNGQ 675
D+++V+DNG+
Sbjct: 189 QLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+++ Y + VL ++S + GE ++G GAGKS+LL A+ L++ SSG+IK
Sbjct: 5 IEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 497 IDDFDIASVELETLRSRLSVIPQ 519
I + R R+ +PQ
Sbjct: 63 IFGKPVRKRR---KRLRIGYVPQ 82
|
Length = 254 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 1e-10
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 437 IKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
++ +NVS Y L ++S + GE + +VG +G GKS+LL + L +SG+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLF 524
+ +D + + Q L
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALL 85
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVL- 581
G+VG +G+GKS+L A+ L++ +SG I D D+ + + R + ++ QDP+
Sbjct: 35 GLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSS 94
Query: 582 FNG--TIRYNL-DPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDVQG---DQLSLG 633
N TI + +P R H ++ E L V L +V +LS G
Sbjct: 95 LNPRMTIGEQIAEPL-RIHGKLSKKEARKEAVLLLLVGV----GLPEEVLNRYPHELSGG 149
Query: 634 EKQLLCLARALLRK 647
++Q + +ARAL
Sbjct: 150 QRQRVAIARALALN 163
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 39/127 (30%), Positives = 73/127 (57%), Gaps = 10/127 (7%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VGR+G+GKS++ L R ++ G+I +D D+ L +LR++++++ Q+ LFN TI
Sbjct: 374 LVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTI 433
Query: 587 RYNL-----DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLC 639
N+ + + R ++ +A ++ + M + LD+ + G LS G++Q +
Sbjct: 434 ANNIAYARTEQYSR---EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490
Query: 640 LARALLR 646
+ARALLR
Sbjct: 491 IARALLR 497
|
Length = 582 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-10
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+S Y L+L ++S IN G+ IG+VGR GAGKS+LL + +E G +
Sbjct: 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 497 IDD 499
Sbjct: 59 WGS 61
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 33/183 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GI+G +G+GKS+L L + +SG +++D D+ + E L + +PQD LF+GT
Sbjct: 366 GIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425
Query: 586 IRYNLDPFGRCHDTE-LWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
I N+ FG D E + +A + + ++ + D+ + G LS G++Q + LAR
Sbjct: 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485
Query: 643 AL---------------------------LRKTKKKKKSGVNIT-RP--VTSCDKVLVMD 672
AL + K + + V I RP + S DK+LV+
Sbjct: 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQ 545
Query: 673 NGQ 675
+G+
Sbjct: 546 DGR 548
|
Length = 580 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +NVS + D + ++S I GE + ++G +G GK++LL + + SSG+I
Sbjct: 6 LEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+D DI V E + + ++ Q LF
Sbjct: 64 LDGEDITDVPPE--KRPIGMVFQSYALF 89
|
Length = 352 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 4e-10
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 15/131 (11%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F GIVG +G+GKS+L L RL GQ+ +D D+A + LR ++ V+ Q+ VLF+
Sbjct: 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS 544
Query: 584 GTIRYNLD------PFGRC-HDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
+IR N+ PF H +L A + + + +++V +G LS G+
Sbjct: 545 RSIRDNIALCNPGAPFEHVIHAAKLAGAHD------FISELPQGYNTEVGEKGANLSGGQ 598
Query: 635 KQLLCLARALL 645
+Q + +ARAL+
Sbjct: 599 RQRIAIARALV 609
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I FKNVS +Y+ + L +VSF I G+ IVG G+GKS++ + + ++ SG+I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
++ I E LR + ++ Q+P N VG
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPD--NQFVGSI 100
|
Length = 269 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 28/145 (19%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDP- 579
F ++G +GAGKS+LL L LVE +SG + ID DI + L LR ++ +I Q
Sbjct: 29 FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFN 88
Query: 580 ------VLFN---------GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSD 624
VL N T R F + ALE+ L K
Sbjct: 89 LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR------- 141
Query: 625 VQGDQLSLGEKQLLCLARALLRKTK 649
DQLS G++Q + +ARAL+++ K
Sbjct: 142 --ADQLSGGQQQRVAIARALMQQPK 164
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-10
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 33/183 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
I+G +G+GKS+L + + +SG +++D D+ + ET + +PQD LF GT
Sbjct: 348 AIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGT 407
Query: 586 IRYNLDPFGRCHDTE-LWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
+ N+ FG D E + +A + + + ++ + D+ + G LS G++Q + LAR
Sbjct: 408 VAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467
Query: 643 AL---------------------------LRKTKKKKKSGVNIT-RP-VTSC-DKVLVMD 672
AL ++ K + + V IT RP + C DK+LV+
Sbjct: 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQ 527
Query: 673 NGQ 675
+G+
Sbjct: 528 DGR 530
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
++ KNV + VL +V+ I GE + ++G +G GKS+LL + L E +SG+I
Sbjct: 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLF 524
ID D+ +L + ++++ Q+ L+
Sbjct: 61 LIDGRDVT--DLPPEKRGIAMVFQNYALY 87
|
Length = 338 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 5e-10
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
+N+S Y+ +L ++S + GE I + G+ GAGK++L L L++ SSG I ++
Sbjct: 3 ENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 500 FDIASVELETLRSRLSVIPQDP 521
I + E R + + QD
Sbjct: 62 KPIKAKE---RRKSIGYVMQDV 80
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 7e-10
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 20/82 (24%)
Query: 437 IKFKNVSLRYRDN--------------------WPLVLANVSFRINHGENIGIVGRTGAG 476
I+ +NVS Y L +VSF + GE IG++GR GAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 477 KSSLLVALFRLVELSSGQIKID 498
KS+LL L + SG + +
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVR 82
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 8e-10
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G++G GAGK++ L L + +SG I+ + I + + + R L PQ LF+
Sbjct: 32 GLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSLGYCPQFDALFDEL 90
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
T+R +L + R + E+ L +V+ + K + + LS G K+ L LA AL
Sbjct: 91 TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRAR--TLSGGMKRKLSLAIAL 148
Query: 645 L 645
+
Sbjct: 149 I 149
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 8e-10
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ + VS + VL +++ + GE + I+G +G GKS+LL + L + +SG++
Sbjct: 4 LEIEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+D + + + Q+ L
Sbjct: 62 LDGRPVTGP-----GPDIGYVFQEDALL 84
|
Length = 248 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 9e-10
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 437 IKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I ++ S + L +++ + GE + IVG G+GKSSLL AL +E SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
+ ++ ++ + Q+P + NG
Sbjct: 61 SV-------------SVPGSIAYVSQEPWIQNG 80
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 428 LADWPRQGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485
LA +G I+F++VS Y R + P VL ++F ++ GE + +VG +G+GKS++ L
Sbjct: 470 LAPLNLEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ 528
Query: 486 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
L + + GQ+ +D + + L +++++ Q+PVLF+G V
Sbjct: 529 NLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSV 571
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+ +++++ Y + VL +VSF + GE + IVG GAGKS+LL A+ L++ +SG I++
Sbjct: 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 498 DDFDIASVELETLRSRLSVIPQ 519
+ R R+ +PQ
Sbjct: 59 FGKPLEKE-----RKRIGYVPQ 75
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
+ Y +L N+S + GE I I G +G GKS+LL + L+ +SG + + D++
Sbjct: 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 504 SVELETLRSRLSVIPQDPVLFNGIV 528
+++ E R ++S Q P LF V
Sbjct: 69 TLKPEAYRQQVSYCAQTPALFGDTV 93
|
Length = 223 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRS 512
+S + G+ +G+VG +G+GKS+L +AL RL+ S G+I+ D DI + E+ LR
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRPLRR 363
Query: 513 RLSVIPQDP 521
R+ V+ QDP
Sbjct: 364 RMQVVFQDP 372
|
Length = 534 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-09
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
+N+S+R +L +VS + GE + I+G GAGKS+LL AL + SG+++++
Sbjct: 6 RNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNG 63
Query: 500 FDIASVELETLRSRLSVIPQDPVL 523
+A L R +V+PQ L
Sbjct: 64 RPLADWSPAELARRRAVLPQHSSL 87
|
Length = 258 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 74/204 (36%)
Query: 526 GIVGRTGAGKSSLLVALFRLVEL----SSGQIKIDDFDIASV---ELETLRSRLSVIPQD 578
GI+GR+GAGKS+L+ R + +SG + +D D+ + EL R R+ +I Q
Sbjct: 35 GIIGRSGAGKSTLI----RCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQH 90
Query: 579 PVLFN-----GTIRYNLDPFGRCHDTELWDALEKSHLKSKV------VTMRSKLDSDVQG 627
L + + L E+ + K+ ++ +V V + K D+
Sbjct: 91 FNLLSSRTVFENVALPL---------EIA-GVPKAEIEERVLELLELVGLEDKADA--YP 138
Query: 628 DQLSLGEKQLLCLARAL---------------------------LRKTKKKKKSGVNITR 660
QLS G+KQ + +ARAL LR ++ + +T
Sbjct: 139 AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE----LGLTI 194
Query: 661 PVTS---------CDKVLVMDNGQ 675
+ + CD+V VM+ G+
Sbjct: 195 VLITHEMEVVKRICDRVAVMEKGE 218
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 41/189 (21%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPV-- 580
++G G+GKS+LL L L++ +SG++ +D D +S + L LR ++ ++ Q+P
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQ 91
Query: 581 LFNGTIRYNLD--PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
LF T+ + E + E+ ++V + LD LS G+KQ +
Sbjct: 92 LFGPTVEDEVAFGLENLGLPRE--EIEERVAEALELVGLEELLDRPPF--NLSGGQKQRV 147
Query: 639 CLARAL---------------------------LRKTKKKKKSG-VNITRPV----TSCD 666
+A L L+K K++ + +T + D
Sbjct: 148 AIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYAD 207
Query: 667 KVLVMDNGQ 675
+V+V+D+G+
Sbjct: 208 RVVVLDDGK 216
|
Length = 235 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR-LSVIPQDPVL-FN 583
GIVG +G+GKS+L L L + SSG I +D +A + R + ++ QDP N
Sbjct: 37 GIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96
Query: 584 ------GTIRYNLDPFGRCHDTEL--WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
+ L P G ++ + L++ L + R +LS G++
Sbjct: 97 PRRTVGRILSEPLRPHGL-SKSQQRIAELLDQVGLPPSFLDRRP--------HELSGGQR 147
Query: 636 QLLCLARALLRKTK-----------------------KKKKSGVNITRPVTS-------- 664
Q + +ARAL+ + K + K +T S
Sbjct: 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEH 207
Query: 665 -CDKVLVMDNGQ 675
CD++ VMDNGQ
Sbjct: 208 MCDRIAVMDNGQ 219
|
Length = 252 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+G + +NV++ L +SF + GE + I+G +G+GKS+L + + +SG
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529
+++D D+ + ET + +PQD LF G V
Sbjct: 374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVA 409
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 3e-09
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 437 IKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+ KN+S Y L VS I GE + IVG +G+GKS+LL L L +SG+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 495 IKIDDFDIAS---VELETLRSR-LSVIPQD 520
+++D DI+ EL R R + + Q
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQS 90
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 20/130 (15%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLF 582
GI+G +GAGKS+LL + L +SG + +D D+ ++ EL LR ++ +I Q L
Sbjct: 36 GIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95
Query: 583 NG-TIRYNLD-PFGRCHDTELWDALEKSHLKSKV------VTMRSKLDSDVQGDQLSLGE 634
+ T+ N+ P EL + K+ +K +V V + K D QLS G+
Sbjct: 96 SSRTVFENVAFPL------ELA-GVPKAEIKQRVAELLELVGLSDKADR--YPAQLSGGQ 146
Query: 635 KQLLCLARAL 644
KQ + +ARAL
Sbjct: 147 KQRVAIARAL 156
|
Length = 339 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 4e-09
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 47/164 (28%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID--DFDIASVELETLRSRLSVIPQDPVLF- 582
G+VG +G+GKS+L L L+ SSG I D D D+ EL LR R+ ++ QDP
Sbjct: 321 GLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380
Query: 583 --NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDS------------DVQGD 628
T+ L + L S R+++ D
Sbjct: 381 NPRMTVGDILA-----------EPLRIHGGGSGAE-RRARVAELLELVGLPPEFLDRYPH 428
Query: 629 QLSLGEKQLLCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
+LS G++Q + +ARAL P K+L++D
Sbjct: 429 ELSGGQRQRVAIARAL-------------ALEP-----KLLILD 454
|
Length = 539 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 4e-09
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
+L VS + GE + ++GR GAGK++LL + L+ SG I+ D DI + R+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RA 73
Query: 513 RLSV--IPQDPVLF 524
R + +P+ +F
Sbjct: 74 RAGIGYVPEGRRIF 87
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ + V+ + D ++L V + GE + I+G +G+GKS+LL + L+ G+I
Sbjct: 9 IEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 497 IDDFDIASV---ELETLRSRLSVIPQDPVLF 524
ID DI + EL +R R+ V+ Q LF
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97
|
Length = 263 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 6e-09
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP-QDPVLFNG 584
G++G GAGK++LL + L+ SG++ ID D + +R ++ V+ + +
Sbjct: 32 GLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYARL 90
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
T R NL F R + + + SK + + LD V S G KQ + +ARAL
Sbjct: 91 TARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGE--FSTGMKQKVAIARAL 148
Query: 645 LRKTK 649
+
Sbjct: 149 VHDPS 153
|
Length = 245 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
T+ +N++ Y+ V+ +VS +N GE +G++G GAGK++ + LV SG
Sbjct: 2 MSTLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 494 QIKIDDFDIASVELETLRSRLSV--IPQDPVLFNGI 527
+I +DD DI + + R+RL + +PQ+ +F +
Sbjct: 60 KILLDDEDITKLPMH-KRARLGIGYLPQEASIFRKL 94
|
Length = 243 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 6e-09
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 436 TIKFKNVSLRYRDNWPLV---LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
+IKF+NV Y P+ L N+SF + G + +VG TG+GKS+L+ L++ SS
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 493 GQIKIDDFDI----ASVELETLRSRLSVIPQDP 521
G I I + I + L+ LR ++S++ Q P
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFP 94
|
Length = 287 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 7e-09
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV--IPQDPVLF- 582
++GR GAGK++LL + L+ SG I+ D DI + R+R + +P+ +F
Sbjct: 30 ALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RARAGIGYVPEGRRIFP 88
Query: 583 NGTIRYNLD--PFGRCHDTELWDALEKSHLKSKVVTMRSKLD--SDVQGDQLSLGEKQLL 638
T+ NL + R LE +V + +L LS GE+Q+L
Sbjct: 89 ELTVEENLLLGAYARRRAKRKAR-LE------RVYELFPRLKERRKQLAGTLSGGEQQML 141
Query: 639 CLARALLRKTK 649
+ARAL+ + K
Sbjct: 142 AIARALMSRPK 152
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 7e-09
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-R 511
L VS + GE + ++GR GAGK++LL + LV SG+I D DI + R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 512 SRLSVIPQ 519
++ +P+
Sbjct: 78 LGIAYVPE 85
|
Length = 237 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 9e-09
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 20/129 (15%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQD-PVLF 582
+ G +GAGKS+LL ++ + G+I ++ D++ + E+ LR ++ V+ QD +L
Sbjct: 33 LTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92
Query: 583 NGTIRYN----LDPFGRCHDT---ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
+ T+ N L G+ + + L+ LK K QLS GE+
Sbjct: 93 DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKA---------RALPSQLSGGEQ 143
Query: 636 QLLCLARAL 644
Q + +ARA+
Sbjct: 144 QRVAIARAI 152
|
Length = 223 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 9e-09
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----S 491
I+ +++++ Y D L ++S I GE ++G +G GKS+LL L RL +L
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 492 SGQIKIDDFDIAS--VELETLRSRLSVIPQDPVLFNGIV 528
G++ +D DI V++ LR R+ ++ Q P F G +
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSI 97
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 38/150 (25%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA---SVELETLRSRLSVIPQDPV 580
I+G +GAGKS+LL +L LV+ +SG+I + I EL LR + +I Q
Sbjct: 32 MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91
Query: 581 LFNGTIRYNLDPF-----GRCHDTELW----------------DALEKSHLKSKVVTMRS 619
L L GR T W DALE+ + K
Sbjct: 92 LVP-----RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ--- 143
Query: 620 KLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
+ LS G++Q + +ARAL+++ K
Sbjct: 144 ------RASTLSGGQQQRVAIARALVQQPK 167
|
Length = 258 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NG 584
G++G GAGK++L+ L L SSG I+ID D+ + + LR R+ +PQ+ ++ N
Sbjct: 29 GLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV-LKQPQKLRRRIGYLPQEFGVYPNF 87
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLD-SDVQGD---QLSLGEKQLLCL 640
T+R LD + +K++V + ++ D LS G ++ + +
Sbjct: 88 TVREFLDYIAWLKG------IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGI 141
Query: 641 ARALLRK 647
A+AL+
Sbjct: 142 AQALVGD 148
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 1e-08
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 18/132 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLF-NG 584
++GR GAGK++LL + LV SG+I D DI + R ++ +P+ +F
Sbjct: 34 LLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93
Query: 585 TIRYNLD--PFGRCHDTELWDALEKSH-----LKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
T+ NL + R LE+ + LK R++ LS GE+Q+
Sbjct: 94 TVEENLLLGAYARRDKEAQERDLEEVYELFPRLK----ERRNQR-----AGTLSGGEQQM 144
Query: 638 LCLARALLRKTK 649
L +ARAL+ + K
Sbjct: 145 LAIARALMSRPK 156
|
Length = 237 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 437 IKFKNVSLRYRDN----WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
IK KNVS +Y N L L +V+ + GE + I+GR G+GKS++ + L+ S
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 493 GQIKIDDFDIASVE-LETLRSRLSVIPQDP 521
G++ +D D + E L +R++ ++ Q+P
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNP 94
|
Length = 280 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 437 IKFKNVSLRYR-DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+ K ++ R L ++SF I GE +GI+G GAGKS+LL + + + +SG++
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 496 KID 498
K+
Sbjct: 85 KVT 87
|
Length = 249 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G++G GAGK++ L L L+E +G +D FD+ E R RL + L++
Sbjct: 35 GLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA-RRRLGFVSDSTGLYDRL 93
Query: 585 TIRYNLDPFGRCHD---TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLA 641
T R NL+ F + EL LE+ + + M LD V G S G +Q + +A
Sbjct: 94 TARENLEYFAGLYGLKGDELTARLEEL---ADRLGMEELLDRRVGG--FSTGMRQKVAIA 148
Query: 642 RALL 645
RAL+
Sbjct: 149 RALV 152
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 428 LADWPRQ-----------GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAG 476
L D PRQ G I NVS YRD+ VL N++ + + +VG TG+G
Sbjct: 321 LMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSG 379
Query: 477 KSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 523
KS+L L L+ G+I++D ++S+ LR ++++ QDPV+
Sbjct: 380 KSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426
|
Length = 592 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 71/185 (38%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET--LRSRLSVIPQDPVLFN 583
++G +G+GKS+LL + L E SG I ID D+ +E E LR R+ ++ QD LF
Sbjct: 30 ALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89
Query: 584 G-TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
T+ N + + LS G++Q + LAR
Sbjct: 90 HLTVLEN-------------------------IALG-----------LSGGQQQRVALAR 113
Query: 643 AL-----------------------LRKTKKKKKSGVNITRPVTS---------CDKVLV 670
AL +R K ++ + IT + + D+V+V
Sbjct: 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173
Query: 671 MDNGQ 675
+ +G+
Sbjct: 174 LRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 2e-08
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF- 582
F ++G +G GK++LL + L SG+I ID D+ V E R + ++ QD LF
Sbjct: 28 FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGMVFQDYALFP 85
Query: 583 ------NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
N I + L G + + ++V + L+ +LS G++Q
Sbjct: 86 HLTVAEN--IAFGLKLRGVPKA----EIRARVRELLELVGLEGLLNRYP--HELSGGQQQ 137
Query: 637 LLCLARALLRK 647
+ LARAL R+
Sbjct: 138 RVALARALARE 148
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 446 YRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505
Y +L N+SF + GE I G +G GKS+LL + L+ +SG + + DI+++
Sbjct: 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL 74
Query: 506 ELETLRSRLSVIPQDPVLFNGIV 528
+ E R ++S Q P LF V
Sbjct: 75 KPEIYRQQVSYCAQTPTLFGDTV 97
|
Length = 225 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 21/137 (15%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-F 582
G+VG GAGK++LL A+ + ++G + + D+ ++ R++ +PQD L F
Sbjct: 31 LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSF 90
Query: 583 NGTIRY-----------NLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLS 631
+R D + + A+E++ + D V LS
Sbjct: 91 EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-------DRPV--TSLS 141
Query: 632 LGEKQLLCLARALLRKT 648
GE+Q + LARAL + T
Sbjct: 142 GGERQRVLLARALAQAT 158
|
Length = 402 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 520 DPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579
F I G +G GKS+LL + L+ +SG + + D+++++ E R ++S Q P
Sbjct: 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86
Query: 580 VLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLC 639
LF T+ NL + + A L + S L ++ +LS GEKQ +
Sbjct: 87 ALFGDTVEDNLIFPWQIRNRRPDRAAALDLLA-RFALPDSILTKNIT--ELSGGEKQRIA 143
Query: 640 LARAL 644
L R L
Sbjct: 144 LIRNL 148
|
Length = 223 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I ++S+ + D VL V + G +G+VG GAGK++LL A+ + ++G +
Sbjct: 3 MIDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVL---FNG--IV--GRT 531
+ D+ ++ R++ +PQD L F+ +V GRT
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRT 103
|
Length = 402 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 432 PRQGTIKFKNVSLRYRDN-WPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489
P + I+ ++S L +L V + GE + IVG +G+GKS+LL L L +
Sbjct: 2 PAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD 61
Query: 490 LSSGQIKIDDFDIASVELETLRSRL 514
SSG++++ + ++ E R+ L
Sbjct: 62 PSSGEVRLLGQPLHKLD-EDARAAL 85
|
Length = 228 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +++S RY D L +VSF + GE + IVG G+GKS+L L L+ +G I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
+ ++ + +R ++ ++ Q+P N VG T
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPD--NQFVGAT 98
|
Length = 279 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K +++ Y VL ++S + GE G +G GAGK++ + + L++ SG+I
Sbjct: 1 LKTNDLTKTYGKK--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530
D + R+ + + P + + R
Sbjct: 59 FDGKSY--QKNIEALRRIGALIEAPGFYPNLTAR 90
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQD-PVLF 582
+ G +GAGK++LL L+ + S GQ++I D+ + +L LR R+ V+ QD +L
Sbjct: 33 LTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92
Query: 583 NGTIRYN----LDPFGRCHDT---ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
+ T+ N L+ G+ + AL + L+ K D +QLS GE+
Sbjct: 93 DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKA---------DAFPEQLSGGEQ 143
Query: 636 QLLCLARALLRK 647
Q + +ARA++
Sbjct: 144 QRVAIARAIVNS 155
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 14/130 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVELETLRSRLSVIPQDP 579
I+G +G GKS+ + L R+VEL ++G+I D +I S +E LR+ + ++ Q P
Sbjct: 55 IIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114
Query: 580 VLFNGTIRYNLDPFGRCH---DTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGE 634
F +I N+ + H D + D + + L+ + ++ +L + G LS G+
Sbjct: 115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYG--LSGGQ 172
Query: 635 KQLLCLARAL 644
+Q LC+AR L
Sbjct: 173 QQRLCIARCL 182
|
Length = 271 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 23/143 (16%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDI--ASVELETLR 569
IP++ V ++G +G GKS+LL L R+ +L G++ +D +I V++ LR
Sbjct: 30 IPKNKV--TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELR 87
Query: 570 SRLSVIPQDPVLFNGTIRYNLDPFG-RCH---DTELWD----ALEKSHLKSKVVTMRSKL 621
R+ ++ Q P F +I N+ +G R H D EL + +L+K+ L +V + +L
Sbjct: 88 RRVGMVFQKPNPFPMSIYDNV-AYGLRLHGIKDKELDEIVESSLKKAALWDEV---KDRL 143
Query: 622 DSDVQGDQLSLGEKQLLCLARAL 644
LS G++Q LC+ARAL
Sbjct: 144 HKS--ALGLSGGQQQRLCIARAL 164
|
Length = 253 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 437 IKFKNVSLRYRDNWPL--VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+ KNVS Y L +V+ I GE + IVG +G+GKS+LL L L + +SG+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 495 IKIDDFDIASV---ELETLR-SRLSVIPQD 520
+ I+ D+ + EL LR ++ + Q+
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQN 91
|
Length = 226 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 5e-08
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +NVS Y D P L N++ I GE IGI+G+ G+GKS+L + L L+ G++
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 497 IDDFDIASV-ELETLRSRLSVIPQDPVLFNGIVGRT 531
+ D +L+ +R + ++ Q+P VGRT
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPE--TQFVGRT 94
|
Length = 274 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
T++ +N+++ Y +L ++S + G+ ++G G GKS+LL RL+ SG +
Sbjct: 2 TLRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527
+ D I+ + L RL+++PQ + GI
Sbjct: 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91
|
Length = 255 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 6e-08
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 490 LSSGQIKIDDFDIASVEL-----ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
+ +G+ D F+I+ + L L+ IP + + GI+G +G+GKS+LL L R
Sbjct: 1 MEAGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIF--GIMGPSGSGKSTLLKVLNR 58
Query: 545 LVELSSGQIKID------DFDIASVELETLRSRLSVIPQDPVLFN-----GTIRYNLDPF 593
L+E+ +IK+D DI ++ LR + ++ Q P F I Y L
Sbjct: 59 LIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH 118
Query: 594 GRCHDTELWDALEKSHLKSKV-VTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
G E+ +E+ K + + +L+S QLS G++Q L +ARAL K K
Sbjct: 119 GIKEKREIKKIVEECLRKVGLWKEVYDRLNS--PASQLSGGQQQRLTIARALALKPK 173
|
Length = 257 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511
+ + S + GE I+G +G+GKS+L+ L RL+E + G+I +D DIA + LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
|
Length = 386 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 527 IVGRTGAGKSSL--LVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584
+VG +G+GKS++ LVA L + SG+I D + E L + ++++ QD LF G
Sbjct: 510 LVGGSGSGKSTIAKLVA--GLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG 567
Query: 585 TIRYNLDPFGRC-HDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLA 641
T+R NL + D +L A + + + + + D+++ G LS G++Q L +A
Sbjct: 568 TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627
Query: 642 RALLR 646
RAL+R
Sbjct: 628 RALVR 632
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502
VSF I GE +G+VG +G GKS+L + L E +SG+I + DI
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI 77
|
Length = 268 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL---- 548
G+I + D D+ + + L+ I ++ V ++G +G GKS+ L L R+ +L
Sbjct: 2 GKISVKDLDLFYGDFQALKKINLDIEENQVT--ALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 549 -SSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH----DTEL 601
G++ +D DI + +++ LR R+ ++ Q P F +I N+ R H +L
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKL 119
Query: 602 WDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ +EKS LK + ++ +L G LS G++Q LC+ARAL
Sbjct: 120 DEIVEKS-LKGAALWDEVKDRLKKSALG--LSGGQQQRLCIARAL 161
|
Length = 250 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 21/132 (15%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE----LETLRSRLSVIPQDPVLF 582
I+G +G+GKS+LL + L + SGQ+ ++ + + + R +L + Q+ L
Sbjct: 29 IIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALI 88
Query: 583 -NGTIRYNLD-PF------GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE 634
N T+ NLD + + +ALEK V + KL + +LS GE
Sbjct: 89 ENETVEENLDLGLKYKKLSKKEKREKKKEALEK-------VGLNLKLKQKIY--ELSGGE 139
Query: 635 KQLLCLARALLR 646
+Q + LARA+L+
Sbjct: 140 QQRVALARAILK 151
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGT 585
++G +G+GK++ L + RL+E +SG+I ID DI+ ++ LR ++ + Q LF + T
Sbjct: 32 LIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT 91
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQG------DQLSLGEKQLLC 639
+ N+ WD K +K + + + D +LS G++Q +
Sbjct: 92 VAENI---ATVPKLLGWD---KERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG 145
Query: 640 LARAL 644
+ARAL
Sbjct: 146 VARAL 150
|
Length = 309 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLS 573
I +F +VG +GAGKS+LL +++ +SG I+++ D++ + + LR ++
Sbjct: 24 ISAGEFVF--LVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81
Query: 574 VIPQD-PVLFNGTIRYNLDPFGRC--HDTELW-----DALEKSHLKSKVVTMRSKLDSDV 625
V+ QD +L + + N+ ALE L K + +
Sbjct: 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPA------ 135
Query: 626 QGDQLSLGEKQLLCLARALLR 646
+LS GE+Q + +ARA++
Sbjct: 136 ---ELSGGEQQRVAIARAIVN 153
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
+L +SF + GE +GI+G +G+GKS+L L + +SG +++D D+ + E L
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 513 RLSVIPQDPVLFNGIV 528
+ +PQD LF+G +
Sbjct: 411 HIGYLPQDVELFDGTI 426
|
Length = 580 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+ +Y D + VSFR+ GE G++G GAGK++ + L L++ +SG+
Sbjct: 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530
+ D+ E +R R+ ++ QD + + + G
Sbjct: 59 VAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGW 91
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETL 510
+ +VS + GE I+G +G+GKS+LL + RL+E +SG++ ID DIA++ EL L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 511 RSR 513
R +
Sbjct: 100 RRK 102
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 437 IKFKNVSLRYRDNWP-LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I+ KN++ +Y+++ L +VSF + GE + I+G G+GKS+ + + L+E SGQI
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
ID + + +R ++ ++ Q+P N VG T
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPD--NQFVGAT 98
|
Length = 279 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 526 GIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIAS--VELETLRSRLSVIPQD 578
++G +G GKS+LL +L R+ +L G++ D DI +++ LR R+ ++ Q
Sbjct: 31 ALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQK 90
Query: 579 PVLFNGTIRYNLDPFG-RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLG 633
P F +I N+ +G R H EL + +E+S LK + K LS G
Sbjct: 91 PNPFPMSIYDNI-AYGPRLHGIKDKKELDEIVEES-LKKAALWDEVKDRLHDSALGLSGG 148
Query: 634 EKQLLCLARAL 644
++Q LC+ARAL
Sbjct: 149 QQQRLCIARAL 159
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++F+NVS Y L+L ++SFRI+ G+ I IVG GAGKS+LL L + SG +K
Sbjct: 322 LEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380
Query: 497 I 497
+
Sbjct: 381 V 381
|
Length = 530 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 3e-07
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ + ++ R+ L VS + GE ++G GAGKS+L+ L L + SG+I
Sbjct: 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 497 ID--DFDIASVELETLRSRLSVIPQDPV 522
+D + AS + R+ ++++ Q V
Sbjct: 59 VDGKEVSFASP-RDARRAGIAMVYQLSV 85
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516
V+F++ GE G +G GAGK++ + L L+ +SG ++ +D+ E +R + +
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGI 70
Query: 517 IPQDPVLFNGIVGR 530
+PQ + + GR
Sbjct: 71 VPQYASVDEDLTGR 84
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 29/156 (18%), Positives = 67/156 (42%), Gaps = 2/156 (1%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
L FQ++ +++ F+++ + L LL I L L+S V +R+L R E + +
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAK 178
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIA 348
S ++SG+ + F +E+ + R+ + ++ ++ +++ ++
Sbjct: 179 AGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLS 238
Query: 349 MAIIT--GLTVAFHGSVSPALAGLALTYASHVTGLL 382
A+ G + G +S L+ ++G L
Sbjct: 239 YALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 437 IKFKNVSLRYRDNWPL--VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
+K +N+ RY++ VL VS I GE + IVG +G+GKS+LL L L +SG+
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 495 IKIDDFDIASV---ELETLRSR 513
+ + ++ + E LR++
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNK 83
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F IVG +G+GKS+LL L SG + D D+A ++++ +R +L V+ Q+ L +
Sbjct: 481 FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS 540
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLA 641
G+I N+ E W+A + L + M + + + G LS G++Q L +A
Sbjct: 541 GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600
Query: 642 RALLRKTK-------------------KKKKSGVNITRPVTS--------CDKVLVMDNG 674
RAL+RK + + + +TR V + D++ V+D G
Sbjct: 601 RALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAG 660
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 36/171 (21%)
Query: 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS-----GQ 552
DD + V ++ IP+ V ++G +G GKS+ L L R+ + G
Sbjct: 57 DDHALKGVSMD--------IPEKSV--TALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106
Query: 553 IKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH------------- 597
+++D DI V L LR R+ ++ Q P F +IR N+ R H
Sbjct: 107 VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLG 166
Query: 598 --DTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
D + D L + L+ + + +LD + G LS G++Q LC+AR L
Sbjct: 167 RDDKDAEDELVERSLRQAALWDEVNDRLDDNALG--LSGGQQQRLCIARCL 215
|
Length = 305 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+FKNVS + VL N+ I+ GE + I+G +G+GKS+LL + +L E++SG +
Sbjct: 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 497 IDDFDI 502
+D +
Sbjct: 60 VDGLKV 65
|
Length = 240 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 4e-07
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 24/167 (14%)
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS---- 549
+I+I D ++ ++E L IP + + ++G +G+GKS+LL RL+EL
Sbjct: 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTI--TALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 550 -SGQIKIDDFDIASVELETLRSRLSVIPQDP-------VLFNGTIRYNLDPFGRCHDTEL 601
SG++ +D DI +++ LR R+ ++ Q P + N + L+ + EL
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK-SKKEL 119
Query: 602 WD----ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ ALEK+ L +V + +LD+ +LS G++Q LC+ARAL
Sbjct: 120 QERVRWALEKAQLWDEV---KDRLDA--PAGKLSGGQQQRLCIARAL 161
|
Length = 250 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 527 IVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE--TLRSRLSVIPQDP 579
++G +G GKS+ L L R+ +L G+I +D +I ++ LR R+ ++ Q P
Sbjct: 37 LIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96
Query: 580 VLFNGTI----RYNLDPFGRCHDTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLG 633
F +I Y L G L + +E+S L+ + ++ +L G LS G
Sbjct: 97 NPFPKSIFENVAYGLRVNGVKDKAYLAERVERS-LRHAALWDEVKDRLHESALG--LSGG 153
Query: 634 EKQLLCLARAL 644
++Q LC+ARAL
Sbjct: 154 QQQRLCIARAL 164
|
Length = 253 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSR--------LSVI 575
I+G +G+GKS+LL + RL+E +SG++ ID DIA++ EL LR + +++
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 576 PQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
P VL N + + L+ G A E L + + D+LS G +
Sbjct: 115 PHRTVLEN--VAFGLEVQGVPRAEREERAAEALEL------VGLEGWEHKYPDELSGGMQ 166
Query: 636 QLLCLARAL 644
Q + LARAL
Sbjct: 167 QRVGLARAL 175
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 437 IKFKNVSLRYRDNWP---LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I F+ V RY+ P L +V+ I G + I+G TG+GKS+LL L L++ +SG
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 494 QIKIDDFDIAS----VELETLRSRLSVIPQDP 521
+ I + I + +L+ LR ++ ++ Q P
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFP 94
|
Length = 290 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
T+ KN++ Y+ V+ +VS +N GE +G++G GAGK++ + +V +G I
Sbjct: 3 TLTAKNLAKAYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60
Query: 496 KIDDFDIASVEL-ETLRSRLSVIPQDPVLF 524
IDD DI+ + L R + +PQ+ +F
Sbjct: 61 IIDDEDISLLPLHARARRGIGYLPQEASIF 90
|
Length = 241 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+ G G GK++LL L L+ SG+++ + +A E R+ L + + +
Sbjct: 31 VTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90
Query: 587 RYNLD---PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
NL + DAL L D+ QLS G+++ L LAR
Sbjct: 91 LENLHFWAAIHGGAQRTIEDALAAVGLTGF---------EDLPAAQLSAGQQRRLALARL 141
Query: 644 LL 645
L
Sbjct: 142 WL 143
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSR 513
V+ R+ GE +G+VG +G GKS+ A+ LV+ + G++ D + E +RS
Sbjct: 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSD 99
Query: 514 LSVIPQDP 521
+ +I QDP
Sbjct: 100 IQMIFQDP 107
|
Length = 331 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELET 509
V+ N+SF + GE +G+VG +G+GKS+ +AL RL+ S G+I D + ++ +L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLP 359
Query: 510 LRSRLSVIPQDP 521
+R R+ V+ QDP
Sbjct: 360 VRHRIQVVFQDP 371
|
Length = 529 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
+L VS + GE + I+G GAGKS+LL AL + SG++ ++ + S E L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 513 RLSVIPQDPVL 523
+V+PQ+ L
Sbjct: 76 HRAVLPQNSSL 86
|
Length = 259 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 6e-07
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 436 TIKFKNVSLRYRDNWPL-----VLANVSFRINHGENIGIVGRTGAGKSSLLVAL--FRLV 488
T+ F+N+++ + P +L NVS + GE I+G +GAGKS+LL AL R
Sbjct: 3 TLSFRNLTV-TVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG 61
Query: 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
SG++ I+ ++ + R + +PQD +L
Sbjct: 62 LGVSGEVLINGR---PLDKRSFRKIIGYVPQDDILH 94
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513
+ +VSF GE G++G GAGK++LL + L+ SG++ ID D + +R +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRK 76
Query: 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK 554
+ V+ + G+ R A ++ A RL LS +IK
Sbjct: 77 IGVLFGE----RGLYARLTARENLKYFA--RLNGLSRKEIK 111
|
Length = 245 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NG 584
G +G GAGK++ + + L++ SG+I D + R+ + + P + N
Sbjct: 30 GFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY--QKNIEALRRIGALIEAPGFYPNL 87
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKS--KVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
T R NL R + K + VV ++ V+G SLG KQ L +A
Sbjct: 88 TARENLRLLARLLG------IRKKRIDEVLDVVGLKDSAKKKVKG--FSLGMKQRLGIAL 139
Query: 643 ALL 645
ALL
Sbjct: 140 ALL 142
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 16/163 (9%)
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS--- 550
+I++++ + + L++ IP++ V ++G +G GKS+ + L R+ +L
Sbjct: 3 RIEVENLNTYFDDAHILKNVNLDIPKNSV--TALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 551 --GQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALE 606
G I +D DI +V++ LR ++ ++ Q P F +I N+ R H + D +E
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 607 K---SHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ LK+ + ++ KLD G LS G++Q LC+AR +
Sbjct: 121 ERVEESLKAAALWDEVKDKLDKSALG--LSGGQQQRLCIARTI 161
|
Length = 250 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 9e-07
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA--SVELETLRSRLSVIPQDP-- 579
F G++G TG+GKS+L+ L L++ +SG+I ID DI V+L +R ++ ++ Q P
Sbjct: 35 FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEY 94
Query: 580 VLFNGTI 586
LF TI
Sbjct: 95 QLFEETI 101
|
Length = 287 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 9e-07
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 434 QGTIKFKNVSLRY-RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSL--LVALFRLVEL 490
G ++ +N++ Y PL+ N S + G+ + +VG +G+GKS++ LVA L +
Sbjct: 475 SGYVELRNITFGYSPLEPPLI-ENFSLTLQPGQRVALVGGSGSGKSTIAKLVA--GLYQP 531
Query: 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
SG+I D + E L + ++++ QD LF G V
Sbjct: 532 WSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 17/128 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS---VEL-ETLRSRLSVIPQDPVLF 582
I+G +G+GKS+ + L RL+E ++GQI ID +I VEL E R ++ ++ Q LF
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83
Query: 583 -NGTIRYNLDPFGRCHDTEL--WDA---LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
+ TI N G EL W EK+ K+V + D+LS G +Q
Sbjct: 84 PHMTILQNTS-LG----PELLGWPEQERKEKALELLKLVGLEEYEHR--YPDELSGGMQQ 136
Query: 637 LLCLARAL 644
+ LARAL
Sbjct: 137 RVGLARAL 144
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 526 GIVGRTGAGKSSLLVALFRLVE----LSSGQIKIDDFDIASV---ELETLR-SRLSVIPQ 577
GIVG +G+GKS+L +AL L+ ++SG++ +D D+ + E+ LR R+++I Q
Sbjct: 39 GIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98
Query: 578 DPV-LFNG--TIRYNLDPFGRCHDTELWDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLG 633
DP+ N TI + R H K ++ + V + D QLS G
Sbjct: 99 DPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGG 158
Query: 634 EKQLLCLARALLRK 647
+Q + +A AL K
Sbjct: 159 MRQRVMIAMALALK 172
|
Length = 539 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGT 585
I+G GAGKS+LL + RL++ SG+I ID ++ S + L +LS++ Q+ + T
Sbjct: 32 IIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91
Query: 586 IRYNLDPFGR 595
+R +L FGR
Sbjct: 92 VR-DLVGFGR 100
|
Length = 252 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS---VEL-ETLR 511
+ I GE I+G +G+GKS+ + L RL+E ++GQI ID +I VEL E R
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 512 SRLSVIPQDPVLF 524
++ ++ Q LF
Sbjct: 71 KKIGMVFQQFALF 83
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
P T++ +NV Y+DN + ++ I GE + ++G G+GKS+L + L L +
Sbjct: 318 PDWKTLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ 376
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTG----------------AGK 535
SG+I +D +++ +LE R S + D LF+ ++G G A K
Sbjct: 377 SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHK 436
Query: 536 SSLLVALFRLVELSSGQIK 554
+SL F ++LS+GQ K
Sbjct: 437 TSLNDGRFSNLKLSTGQKK 455
|
Length = 546 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L +S I G+ + ++G GAGKS+LL A+ ++ +SGQI ID D+ + +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 513 RLSVIPQDP 521
L+ + QDP
Sbjct: 81 LLARVFQDP 89
|
Length = 263 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500
N+S RY V+ VS + GE +G++G GAGK++ + LV+ SG+I +D
Sbjct: 5 NLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQ 62
Query: 501 DIASVELETLRSRLSVI--PQDPVLF 524
DI + + R+RL + PQ+ +F
Sbjct: 63 DITKLPMHK-RARLGIGYLPQEASIF 87
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 46/157 (29%), Positives = 62/157 (39%), Gaps = 48/157 (30%)
Query: 495 IKIDDFDIASVELETLRSRLS--VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552
I++++ +A+ + L LS + P D +L I G +G GKSSL AL L SG+
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLL---ITGPSGTGKSSLFRALAGLWPWGSGR 57
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKS 612
I + L +PQ P L GT+R L + WD
Sbjct: 58 IGM-----------PEGEDLLFLPQRPYLPLGTLREQL-----IY---PWD--------- 89
Query: 613 KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
D LS GE+Q L AR LL K K
Sbjct: 90 ---------------DVLSGGEQQRLAFARLLLHKPK 111
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 436 TIKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
TI+F NVS Y+ P + +V+ G+ IVG+TG+GKS+L+ + L++ ++
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 493 GQIKIDDFDIAS----VELETLRSRLSVIPQDP 521
G + +DD I + +R R+ ++ Q P
Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFP 94
|
Length = 286 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 28/133 (21%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNG 584
I+G +G+GKS+LL + L E SG I ID + + LR ++ ++ Q
Sbjct: 31 IIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQ------ 84
Query: 585 TIRYNLDPFGRCHDTELWD---ALEKSHLKSK---VVTMRSKLD-------SDVQGDQLS 631
+NL P H T L + A K SK L+ +D QLS
Sbjct: 85 ---FNLFP----HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLS 137
Query: 632 LGEKQLLCLARAL 644
G++Q + +ARAL
Sbjct: 138 GGQQQRVAIARAL 150
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 21/133 (15%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF- 582
F ++G +G GKS+LL + L E +SG+I ID D+ +L + ++++ Q+ L+
Sbjct: 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVT--DLPPEKRGIAMVFQNYALYP 88
Query: 583 NGTIRYNLDPFG--------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE 634
+ T+ N+ FG D + + + L L+ + QLS G+
Sbjct: 89 HMTVYENIA-FGLKLRGVPKAEIDKRVKEVAKLLGL-------EHLLNR--KPLQLSGGQ 138
Query: 635 KQLLCLARALLRK 647
+Q + LARAL+RK
Sbjct: 139 RQRVALARALVRK 151
|
Length = 338 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNG 584
I+G GAGKS+LL AL + SG+++++ +A L R +V+PQ L F
Sbjct: 32 AILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91
Query: 585 T----IRYNLDPFGRC--HDTELWD-ALEK---SHLKSKVVTMRSKLDSDVQGDQLSLGE 634
T + P G D L AL + +HL D QLS GE
Sbjct: 92 TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA----------GRDYP--QLSGGE 139
Query: 635 KQLLCLARAL 644
+Q + LAR L
Sbjct: 140 QQRVQLARVL 149
|
Length = 258 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F I G +G GKS+LL + L+ +SG + + DI++++ E R ++S Q P LF
Sbjct: 35 FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG 94
Query: 584 GTIRYNLD-PFGRCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
T+ NL P+ + D LE+ L ++T +LS GEKQ +
Sbjct: 95 DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNI--------AELSGGEKQRI 146
Query: 639 CLARAL 644
L R L
Sbjct: 147 SLIRNL 152
|
Length = 225 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+SL D L+ ++SF I G+ + I G +G GKSSL AL L SG+I
Sbjct: 1 IELENLSLATPDGRVLL-KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59
Query: 497 I 497
+
Sbjct: 60 M 60
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 490 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS 549
++ QIK+++ ++ E + L++ IP++ V ++G +G GKS+ + L R+ +L
Sbjct: 8 VAQPQIKVENLNLWYGEKQALKNVSMQIPKNSV--TALIGPSGCGKSTFIRCLNRMNDLI 65
Query: 550 S-----GQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH--DTE 600
G++ I+ DI V++ LR + ++ Q P F +I N+ R H + +
Sbjct: 66 KNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKK 125
Query: 601 LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
D + ++ L+S + + LS G++Q LC+AR L K K
Sbjct: 126 DLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPK 174
|
Length = 258 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 24/144 (16%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVELETLR 569
I ++ V +G +G GKS+LL R+ EL + G+I +D +I ++ LR
Sbjct: 36 IAKNQV--TAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93
Query: 570 SRLSVIPQDPVLFNGTIRYNLDPFG-RCH--------DTELWDALEKSHLKSKVVTMRSK 620
+++ ++ Q P F +I N+ FG R D + AL K+ L ++V + K
Sbjct: 94 AKVGMVFQKPTPFPMSIYDNI-AFGVRLFEKLSRAEMDERVEWALTKAALWNEV---KDK 149
Query: 621 LDSDVQGDQLSLGEKQLLCLARAL 644
L G LS G++Q LC+AR +
Sbjct: 150 LHQ--SGYSLSGGQQQRLCIARGI 171
|
Length = 260 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
T++ +NV+ Y+DN + ++ I GE + ++G G+GKS+L + L L + SG+I
Sbjct: 322 TLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVA--LFRL-----VEL 548
+D + + + E R S + D LF+ ++G G + LV L RL +EL
Sbjct: 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLEL 440
Query: 549 SSGQI 553
G+I
Sbjct: 441 EDGRI 445
|
Length = 547 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-F 582
F ++G GAGKS+L L RL GQI + D+ L RL V+ Q P L
Sbjct: 29 FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA-RLGVVFQQPTLDL 87
Query: 583 NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
+ ++R NL H +A + + + + D V+ +L+ G ++ + +AR
Sbjct: 88 DLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVR--ELNGGHRRRVEIAR 145
Query: 643 ALL 645
ALL
Sbjct: 146 ALL 148
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L +VSF + G + ++G GAGKS+L L RL GQI + D+ L
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA- 74
Query: 513 RLSVIPQDPVL 523
RL V+ Q P L
Sbjct: 75 RLGVVFQQPTL 85
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS---- 549
+ I++ D+ E + L+S IP V ++G +G GKS+LL L R+ +L
Sbjct: 3 KFNIENLDLFYGENQALKSINLPIPARQV--TALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 550 -SGQIKIDDFDI-ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR----CHDTELWD 603
+G++ +D DI ++++ LR ++ ++ Q P F +I N+ +G D ++ D
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENV-AYGLRAQGIKDKKVLD 119
Query: 604 ALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ + L+ + ++ +L S G LS G++Q LC+AR +
Sbjct: 120 EVVERSLRGAALWDEVKDRLKSHAFG--LSGGQQQRLCIARTI 160
|
Length = 249 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +NV+ R+ L ++SF + GE G++G GAGK++ + + ++ SG++
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 497 IDD 499
D
Sbjct: 59 FDG 61
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 34/142 (23%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDD--FDIASVELETLRSRLSV--IPQDPVLF 582
IVG+ G GKSSLL+A+ ++ G++ + S E R+R SV Q P L
Sbjct: 32 IVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91
Query: 583 NGTIRYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ----GDQ------ 629
N T+ N+ PF + + K VT L D+ GDQ
Sbjct: 92 NATVEENITFGSPFNK--------------QRYKAVTDACSLQPDIDLLPFGDQTEIGER 137
Query: 630 ---LSLGEKQLLCLARALLRKT 648
LS G++Q +C+ARAL + T
Sbjct: 138 GINLSGGQRQRICVARALYQNT 159
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ + +S + L VS + GE ++G GAGKS+L+ L + SG+I
Sbjct: 9 LELRGISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66
Query: 497 IDD--FDIASVELETLRSRLSVIPQDPVLF 524
ID +S + L + ++ + Q+ L
Sbjct: 67 IDGKPVAFSSP-RDALAAGIATVHQELSLV 95
|
Length = 500 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 437 IKFKNVSLRYRDNWPLV---LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
IKF+ V+ Y+ N P L ++ + G ++G TG+GKS+LL L L++ + G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 494 QIKIDDFDIASV----ELETLRSRLSVIPQDP 521
++ + D ++S E++ +R ++ V+ Q P
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP 93
|
Length = 288 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 527 IVGRTGAGKSSLLVALFRL--------VELSSGQIKIDDFDI--ASVELETLRSRLSVIP 576
I+G +G GK++LL ++ R+ VE G+I DI +++ R ++ ++
Sbjct: 34 IIGPSGCGKTTLLRSINRMNDHIPGFRVE---GKIYFKGQDIYDPQLDVTEYRKKVGMVF 90
Query: 577 QDPVLFNGTIRYNLDPFG-RCH---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632
Q P F +I N+ FG R H D + + LK + K + + G +LS
Sbjct: 91 QKPTPFPMSIYDNV-AFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG 149
Query: 633 GEKQLLCLARAL 644
G++Q LC+ARAL
Sbjct: 150 GQQQRLCIARAL 161
|
Length = 250 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 440 KNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+N+++ + + A N+SF + GE + IVG +G+GKS +AL RL+E + G ++
Sbjct: 16 ENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQC 75
Query: 498 D 498
D
Sbjct: 76 D 76
|
Length = 623 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDP 579
G+VG +G+GKS+L +AL RL+ S G+I+ D DI + E+ LR R+ V+ QDP
Sbjct: 317 GLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372
|
Length = 534 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLR-SRLSVIPQD- 578
F IVG +G+GKS+LL L L + +SG++ I+ D+ + EL LR ++ + Q+
Sbjct: 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNF 92
Query: 579 PVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
+L + T+ N++ + +V+ + +L + +LS G++Q +
Sbjct: 93 NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL-KKKPSELSGGQQQRV 151
Query: 639 CLARALL 645
+ARAL+
Sbjct: 152 AIARALI 158
|
Length = 226 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 3e-06
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDIASVELE--TLRSRLSVIPQD 578
I+G +G GKS+LL AL R+ ++ S G + +D+ +I S L+ LR R+ ++ Q
Sbjct: 34 AIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93
Query: 579 PVLFNGTIRYNL--DP--FGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE 634
P F +I N+ P G + L + +EKS L+ + K + G LS G+
Sbjct: 94 PNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKS-LRQAALWDEVKDNLHKSGLALSGGQ 152
Query: 635 KQLLCLARAL 644
+Q LC+AR L
Sbjct: 153 QQRLCIARVL 162
|
Length = 251 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +NV+ R+ + L +++ I GE + ++G +G GK++ L + L E +SG+I
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 497 IDDFDIASVE 506
I D+ +
Sbjct: 59 IGGRDVTDLP 68
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI-----KIDDFDIASVELETL 510
VSF + GE + +VG +G+GKS+ AL RLVE G+I +ID ++ +L+ L
Sbjct: 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID--TLSPGKLQAL 399
Query: 511 RSRLSVIPQDP 521
R + I QDP
Sbjct: 400 RRDIQFIFQDP 410
|
Length = 623 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 23/118 (19%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI----DDFDIASV--- 505
VL NVS +N GE + + G +GAGKS+LL +L+ SG+I + D+A
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 506 ELETLRSR--------LSVIPQ--------DPVLFNGIVGRTGAGKSSLLVALFRLVE 547
E+ +R + L VIP+ +P+L G+ ++ L+A + E
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE 140
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 5e-06
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 526 GIVGRTGAGKSSLLVALFRL---VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 582
++G +G GKS+ L R+ + G ++I+ D+ + ++ LR + ++ Q P +F
Sbjct: 32 ALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91
Query: 583 NGTIRYNLDPFGRCH---------DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLG 633
+I N+ + H + + D L+K L +V + KL + LS G
Sbjct: 92 VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV---KDKLKQNALA--LSGG 146
Query: 634 EKQLLCLARALLRKTK 649
++Q LC+ARAL K K
Sbjct: 147 QQQRLCIARALAIKPK 162
|
Length = 246 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 5e-06
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI-ASVELE 508
+ +VSF + GE +GI G G G++ L ALF L +SG+I +D + +
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRD 71
Query: 509 TLRSRLSVIPQD 520
+R+ ++ +P+D
Sbjct: 72 AIRAGIAYVPED 83
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 5e-06
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID-DFDI-------ASVELETLRSRLSVIPQ 577
I+G +G GKS+ + L R+ EL G +K++ D + + LR ++ ++ Q
Sbjct: 37 AIIGPSGCGKSTFIKTLNRISELE-GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQ 95
Query: 578 DPVLFNGTI----RYNLDPFGRCHDTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLS 631
P F +I Y + + +L D + +S LK + ++ KL+ G LS
Sbjct: 96 RPNPFPMSIYENVAYGVRISAKLPQADL-DEIVESALKGAALWQEVKDKLNKSALG--LS 152
Query: 632 LGEKQLLCLARALLRKTK 649
G++Q LC+ARAL K K
Sbjct: 153 GGQQQRLCIARALAIKPK 170
|
Length = 259 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502
++ + +SF + GE + + G G+GK++LL + L+ ++G IK+D DI
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66
|
Length = 207 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 44/167 (26%), Positives = 87/167 (52%), Gaps = 23/167 (13%)
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS---- 549
++K++ ++ + ++ P++ V I+G +G GKS++L ++ R+ +L
Sbjct: 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSV--TAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 550 -SGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF-------NGTIRYNLDPFGRCHDT 599
+G+I +DD DI V+ ++R R+ ++ Q P F N Y L+ GR + +
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRS 119
Query: 600 ELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
E D + +S LK + ++ +L S+ +LS G++Q LC+AR +
Sbjct: 120 EA-DEIVESSLKRVALWDEVKDRLKSNAM--ELSGGQQQRLCIARTI 163
|
Length = 252 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 27/138 (19%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD---FDIA-SVELETLRSRLSVIPQDP 579
GI G +GAGKS+LL + L + G I ++ FD + L + ++ ++ Q
Sbjct: 25 VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84
Query: 580 VLF-NGTIRYNLDPFG--RCHD-------TELWDALEKSHLKSKVVTMRSKLDSDVQGDQ 629
LF + +R NL FG R + EL D L HL ++ Q
Sbjct: 85 ALFPHLNVRENLA-FGLKRKRNREDRISVDELLDLLGLDHLLNRYP------------AQ 131
Query: 630 LSLGEKQLLCLARALLRK 647
LS GEKQ + LARAL +
Sbjct: 132 LSGGEKQRVALARALAAQ 149
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 24/137 (17%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ------ 577
++G GAGKS+LL A+ L++ SSG+IKI + R R+ +PQ
Sbjct: 32 ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR---KRLRIGYVPQKSSVDR 88
Query: 578 -------DPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQL 630
D VL + F R + + + ++++ L+ V M D + +L
Sbjct: 89 SFPITVKDVVLLGRYGKKGW--FRR-LNKKDKEKVDEA-LER--VGMEDLRDRQIG--EL 140
Query: 631 SLGEKQLLCLARALLRK 647
S G+KQ + LARAL +
Sbjct: 141 SGGQKQRVLLARALAQN 157
|
Length = 254 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +++ Y D L ++F+ GE + ++G GAGKS+L + +++ +SG++
Sbjct: 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 497 ID----DFDIASVELETLRSRLSVIPQDP 521
I +D S L +R + ++ Q+P
Sbjct: 61 IKGEPIKYDKKS--LLEVRKTVGIVFQNP 87
|
Length = 275 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 26/154 (16%)
Query: 442 VSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR--------LVELSSG 493
+ VL N++ I G+ + +VG++GAGK++LL + SG
Sbjct: 388 GVRQRVIERY-VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSG 446
Query: 494 QIKIDDFDIASV---ELE------TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
++++ ++++ E E T+ L D I+ R G + L F
Sbjct: 447 KVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFS 506
Query: 545 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 578
ELS+GQ + +A + L R +V+ D
Sbjct: 507 --ELSTGQKE--RAKLAKL----LAERPNVLLID 532
|
Length = 593 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516
VSF + G+ + I+G G+GKS+L L ++E +SG+I I+D + + R+ +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 517 IPQDP 521
I QDP
Sbjct: 92 IFQDP 96
|
Length = 267 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 9e-06
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI-ASVELETLRSRLSVIPQDPVLF 582
I+G +G+GKS+LL L L E SG I +D D+ ++ LR ++ ++ Q LF
Sbjct: 33 IIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89
|
Length = 240 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 9e-06
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 25/201 (12%)
Query: 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELE 508
L + + S I GE I+G +G+GKS+++ L RL+E + GQ+ ID DIA + EL
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 509 TLRSR--------LSVIPQDPVLFNGIVGRTGAG------KSSLLVALFRLVELSSGQIK 554
+R + +++P VL N G AG + L AL R V L +
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDAL-RQVGLENYAHS 160
Query: 555 IDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSK- 613
D + +R I D +L + LDP R TE+ D L K K +
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFS-ALDPLIR---TEMQDELVKLQAKHQR 216
Query: 614 -VVTMRSKLDSDVQ-GDQLSL 632
+V + LD ++ GD++++
Sbjct: 217 TIVFISHDLDEAMRIGDRIAI 237
|
Length = 400 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 44/205 (21%), Positives = 76/205 (37%), Gaps = 63/205 (30%)
Query: 526 GIVGRTGAGKSSLLVALFRLV-----ELSSGQIKIDDFDIASV---ELETLR-SRLSVIP 576
GIVG +G+GKS L A+ L+ + G+I D D+ S+ EL +R +++I
Sbjct: 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94
Query: 577 QDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKL----------DSDVQ 626
QDP +L+P D + + L + + D + +
Sbjct: 95 QDP-------MTSLNPVMTIGDQ-IAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERR 146
Query: 627 GD----QLSLGEKQ-------LLCLAR--------------------ALLRKTKKKKKSG 655
+LS G +Q L + LL++ +++K +
Sbjct: 147 LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTA 206
Query: 656 -VNIT---RPVTS-CDKVLVMDNGQ 675
+ IT V D+V VM G+
Sbjct: 207 LILITHDLGVVAEIADRVAVMYAGR 231
|
Length = 316 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----S 491
I+ +N++L Y + L N++ I + ++G +G GKS+LL +L R+ +L
Sbjct: 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 492 SGQIKIDDFDIAS--VELETLRSRLSVIPQDPVLFN 525
G++ D DI +++ LR R+ ++ Q P F
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP 95
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
L + +++SF +N GE + I G GAGK++LL L L+ +G++ I
Sbjct: 8 LSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQ 67
Query: 504 SVELETLRS 512
+V ++
Sbjct: 68 NVRESYHQA 76
|
Length = 209 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K +N+S +++ L NVS + G+ I+G TG+GKS LL + ++ SG+I
Sbjct: 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL 57
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
++ DI ++ E + +S +PQ+ LF
Sbjct: 58 LNGKDITNLPPE--KRDISYVPQNYALF 83
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 23/167 (13%)
Query: 488 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE 547
+++ + +F + +V LE R VI +G TG+GKS LL + ++
Sbjct: 1 LKVENLSKDWKEFKLKNVSLEVERGDYFVI----------LGPTGSGKSVLLETIAGFIK 50
Query: 548 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGRCHDTELWDALE 606
SG+I ++ DI ++ E + +S +PQ+ LF + T+ N+ +G +
Sbjct: 51 PDSGKILLNGKDITNLPPE--KRDISYVPQNYALFPHMTVYKNIA-YGLKKRKV-----D 102
Query: 607 KSHLKSKVVTMRSKLDSDVQGDQ----LSLGEKQLLCLARALLRKTK 649
K ++ KV+ + L D ++ LS GE+Q + +ARAL+ K
Sbjct: 103 KKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 528 VGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL--RSRLSVIPQDPV 580
+G +G GKS+ L L +L +L G+I + S ++ +L R+R+ ++ Q P
Sbjct: 114 IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173
Query: 581 LFNGTIRYNLDPFGR---CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
F +I N+ R +D ++ + + + LKS + K D D G+ LS G++Q
Sbjct: 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233
Query: 638 LCLARAL 644
LC+ARA+
Sbjct: 234 LCIARAI 240
|
Length = 329 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +++ RY+D L +S I G ++G GAGKS+LL+ L + G++K
Sbjct: 5 IEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 497 IDDFDIASVELETLRSRLSVIPQDP 521
+ ++ + + +RS++ ++ QDP
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDP 88
|
Length = 274 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481
I+ KNVS+R +L ++S+++N GE+ IVG GAGK++LL
Sbjct: 32 IELKNVSVRRNGKK--ILGDLSWQVNPGEHWAIVGPNGAGKTTLL 74
|
Length = 257 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDI--ASVELETLRSRLSVIP 576
++G +G GKS+ L L R+ + +G+IK + +I + ++L LR + ++
Sbjct: 32 LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVF 91
Query: 577 QDPVLFN----GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632
Q P F + Y L G D EL D + LK + +K + D S
Sbjct: 92 QQPTPFPFSVYDNVAYGLKIAG-VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSG 150
Query: 633 GEKQLLCLARALLRKTK 649
G++Q +C+ARAL + K
Sbjct: 151 GQQQRICIARALAVRPK 167
|
Length = 251 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 11/184 (5%)
Query: 435 GTIKFKNVSLRYRD---NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+I+ K+V + + + L + RI G+ + IVG G GKS+L L
Sbjct: 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS-S 550
G+I +D +++ + R S I D LF+ ++G +SL A L L +
Sbjct: 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIA 455
Query: 551 GQIKIDDFDIA-SVELET-LRSRLSVI----PQDPVLFNGTIRYNLDP-FGRCHDTELWD 603
++KI+D + + L T + RL++I P+L + DP F R EL
Sbjct: 456 DKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 604 ALEK 607
L++
Sbjct: 516 DLKR 519
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 25/142 (17%)
Query: 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564
V + R +L+V+ +G TG+GKS+LL +L E+S G++ +
Sbjct: 679 VSVSVPRGKLTVV----------LGATGSGKSTLLQSLLSQFEISEGRVWAE-------- 720
Query: 565 LETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSD 624
RS ++ +PQ + N T+R N+ F L DA+ S L++ + + L+++
Sbjct: 721 ----RS-IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETE 775
Query: 625 V--QGDQLSLGEKQLLCLARAL 644
+ +G LS G+K + LARA+
Sbjct: 776 IGEKGVNLSGGQKARVSLARAV 797
|
Length = 1560 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGT 585
++G +G GK++LL + + SSG+I +D DI V E + + ++ Q LF + T
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMT 93
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLD----SDVQGDQLSLGEKQLLCLA 641
+ N+ FG + L+K+ +K++V + +D + QLS G++Q + LA
Sbjct: 94 VEENV-AFGLKVRKK----LKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALA 148
Query: 642 RALLRK 647
RAL+ +
Sbjct: 149 RALVPE 154
|
Length = 352 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+ G+ GAGK++L L L++ SSG I ++ I + E R + + QD
Sbjct: 30 ALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE---RRKSIGYVMQDV------ 80
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQ----LSLGEKQLLCL 640
Y L F EL L++ + T+ LD ++ LS G+KQ L +
Sbjct: 81 -DYQL--FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAI 137
Query: 641 ARALLRKTK 649
A ALL
Sbjct: 138 AAALLSGKD 146
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 427 KLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486
K+ P++ +N++L Y ++ L N++ I+ E I+G +G GKS+ + L R
Sbjct: 15 KIETAPKKVVFDTQNLNLWYGEDH--ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNR 72
Query: 487 LVEL-----SSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
+VEL ++G+I D +I S +E LR+ + ++ Q P F
Sbjct: 73 MVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF 117
|
Length = 271 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G +G GAGK++ + L L+ +SG ++ +D+ E +R + ++PQ +
Sbjct: 23 GFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDL 81
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
T R NL+ GR + +A E++ ++ + D V S G ++ L +A +L
Sbjct: 82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG--TYSGGMRRRLDIAASL 139
Query: 645 L 645
+
Sbjct: 140 I 140
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID--DFDIASVELE 508
P VL ++F GE + ++G GAGKS+LL+ L L+ SG + ID D + L
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL 64
Query: 509 TLRSRLSVIPQDP 521
R R+ ++ QDP
Sbjct: 65 ERRQRVGLVFQDP 77
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
VL N++ +I GE + I G TG+GK+SLL+ + +E S G+IK
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK 95
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ-DPVLFNG 584
G++G GAGKS++ L ++ G+I + + S R + V+PQ D +
Sbjct: 34 GLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARVAIGVVPQFDNLDPEF 92
Query: 585 TIRYNLDPFGR---CHDTELWDA----LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
T+R NL FGR E+ LE + L+SK +DV+ LS G K+
Sbjct: 93 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK---------ADVRVALLSGGMKRR 143
Query: 638 LCLARALL 645
L LARAL+
Sbjct: 144 LTLARALI 151
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I L + D PL L N I E + +VGR GAGKS+L+ L V L G+I
Sbjct: 4 ISIHGAWLSFSDA-PL-LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61
Query: 497 IDDFDIASVELETLRSRLSVIPQDP 521
E + + +RL QDP
Sbjct: 62 Y--------EQDLIVARL---QQDP 75
|
Length = 635 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
++ + V+ + D + N+SF + GE G++G GAGK++ + L+E + G+I
Sbjct: 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 496 KIDDFDIA 503
+ ++
Sbjct: 60 TWNGGPLS 67
|
Length = 300 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ + +S + V++N+ IN+GE + ++G +G GK+++L + SG+I
Sbjct: 15 VELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
Query: 497 IDDFDIASVELE 508
+D DI V E
Sbjct: 73 LDGQDITHVPAE 84
|
Length = 375 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+NV RY D LV+ +SF + GE G++G GAGK++ L L L +G I
Sbjct: 8 IDFRNVEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 497 IDDFDIASVELETLRSRLSVIPQ----DP 521
+ + S R R+ V+PQ DP
Sbjct: 66 LCGEPVPS-RARHARQRVGVVPQFDNLDP 93
|
Length = 306 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +NVS Y + L VS I GE ++G +G GK++LL + +SG+I
Sbjct: 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 497 IDDFDIASV 505
+D DI ++
Sbjct: 59 LDGKDITNL 67
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 24/141 (17%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVAL--FRLVELSSGQIKIDDFDIASVELETL 510
+L V+ I GE ++G G+GKS+L + E++ G+I DI + E
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-E 73
Query: 511 RSRLSVI--PQDPVLFNGI----------VGRTGAGK--SSLLVALF---RLV---ELSS 550
R+RL + Q P G+ G +G K + +L L L E S
Sbjct: 74 RARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDS 133
Query: 551 GQIKIDDFDIASVELETLRSR 571
G + ID + + + LR
Sbjct: 134 G-LDIDALRLVAEVINKLREE 153
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQ 494
I+ KN++ ++ VL N+SF I GE +GI+GR+GAGKS L+ L + E +SG+
Sbjct: 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 495 I 495
I
Sbjct: 59 I 59
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTI 586
+G +G+GK++ + + RL+E +SG+I ID DI + LR ++ + Q LF + T+
Sbjct: 33 IGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92
Query: 587 RYNLDPFGRCHDTELWDALEK---SHLKSKVVTMRSKLDSDVQG------DQLSLGEKQL 637
N L L K ++ + + + + D +LS G++Q
Sbjct: 93 EEN---------IALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQR 143
Query: 638 LCLARAL 644
+ +ARAL
Sbjct: 144 VGVARAL 150
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 28/138 (20%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ------ 577
F IVG GAGKS+LL A+ L++ +SG I++ + R R+ +PQ
Sbjct: 27 FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE-----RKRIGYVPQRRSIDR 81
Query: 578 -------DPVLFNGTIRYNLDPFGRCHDTELWD-ALEKSHLKSKVVTMRSKLDSDVQGDQ 629
D VL L D D ALE+ V + D Q +
Sbjct: 82 DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALER-------VGLSELADR--QIGE 132
Query: 630 LSLGEKQLLCLARALLRK 647
LS G++Q + LARAL++
Sbjct: 133 LSGGQQQRVLLARALVQD 150
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 437 IKFKNVSLRYR--DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL-----VE 489
+ +N+S+ + + +SF I GE + +VG +G+GKS +++ L
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 490 LSSGQIKIDDFDIASVELETLR----SRLSVIPQDP 521
SG I D D+ + LR +++ +I Q+P
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP 102
|
Length = 534 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID------DFDIASVE 506
+L +++ +I + GI+G +G+GKS+LL L RL+E+ +IK+D DI ++
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 507 LETLRSRLSVIPQDPVLF 524
LR + ++ Q P F
Sbjct: 85 AIKLRKEVGMVFQQPNPF 102
|
Length = 257 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 437 IKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I +NVS Y+ P L +V+ I G +G TG+GKS+++ L L + G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 494 QIKIDDFDIASV----ELETLRSRLSVIPQDP 521
+++DD I S +++ +R ++ ++ Q P
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFP 94
|
Length = 280 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
++G G GKS+LL RL+ SG + + D I+ + L RL+++PQ + G
Sbjct: 33 LIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92
Query: 587 RYNLDPFGRCHDTELWDAL--------EKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
L +GR LW L ++ ++++ + + +D LS G++Q
Sbjct: 93 VRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRA 147
Query: 639 CLARALLRKT 648
LA L + T
Sbjct: 148 FLAMVLAQDT 157
|
Length = 255 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 431 WPRQGTIKFKNVSLRYRD-NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489
+P L R+ + + +VSF + GE +GI G GAG++ L ALF
Sbjct: 251 FPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP 310
Query: 490 LSSGQIKIDDFDIA 503
SSG+I +D +
Sbjct: 311 ASSGEILLDGKPVR 324
|
Length = 500 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 440 KNVS--LRYRDNW-----PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
+N+S RYR W + +SF + G+ + I+G G+GKS+L L ++E +S
Sbjct: 8 RNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDP 521
G++ IDD + + R+ +I QDP
Sbjct: 68 GELLIDDHPLHFGDYSYRSQRIRMIFQDP 96
|
Length = 267 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 437 IKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
IK KN+ + P L NVS IN GE I I+G+TG+GK++ + L L+ +G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 494 QI 495
I
Sbjct: 63 TI 64
|
Length = 305 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 441 NVSLRYRDNWPL--VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
N+ RY++ VL NVSF I GE + IVG +G+GKS+LL L L +SG +
Sbjct: 10 NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66
|
Length = 233 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 23/131 (17%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR----SRLSVI------- 575
I+G +G+GKS+L+ L RL+E + G+I +D DIA + LR ++S++
Sbjct: 59 IMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118
Query: 576 PQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLD--SDVQGDQLSLG 633
P VL N + + L+ G + ++ L+ +D ++LS G
Sbjct: 119 PHRTVLEN--VAFGLEVQGV--------PKAEREERALEALELVGLEGYADKYPNELSGG 168
Query: 634 EKQLLCLARAL 644
+Q + LARAL
Sbjct: 169 MQQRVGLARAL 179
|
Length = 386 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-SGQIKID--DFDIASVELETLRS 512
+VSF + GE +G+ G GAG++ L+ ALF G + I+ DI + + +R+
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRA 336
Query: 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS-- 570
++++P+D +GIV G GK+ L L +++ID A+ EL+ + S
Sbjct: 337 GIAMVPEDRKR-HGIVPILGVGKNITLSVLKSF----CFKMRID----AAAELQIIGSAI 387
Query: 571 -RLSVIPQDPVL 581
RL V P L
Sbjct: 388 QRLKVKTASPFL 399
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 437 IKFKNVSLRYRDN-------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489
++ ++V+ YR VL NVS I GE +G++GR+G GKS+L L L +
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 490 LSSGQIKIDDFDIASVELET---LRSRLSVIPQD 520
+ G + D+ ++ + R + ++ QD
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQD 96
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 495 IKIDDFDIASVELETLRSRLSVI--PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552
I +++ + + + +TL S L+ P + +L I G +GAGK+SLL AL L SG+
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLL---ITGESGAGKTSLLRALAGLWPWGSGR 449
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR----YNLDPFGRCHDTELWDALEKS 608
I + S L +PQ P L GT+R Y D EL L K
Sbjct: 450 ISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAA-PDFSDAELVAVLHKV 497
Query: 609 HLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
L + + D LS GE+Q L AR LL K K
Sbjct: 498 GLGDLAERLDEEDRWD---RVLSGGEQQRLAFARLLLHKPK 535
|
Length = 604 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 28/152 (18%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELETL--R 569
IPQ+ V ++G +G GKS+LL RL+EL+ G++++ +I S +++ + R
Sbjct: 27 IPQNGVF--ALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84
Query: 570 SRLSVIPQDPVLF-------NGTIRYNLDPFGRCHDTEL-----WDALEKSHLKSKVVTM 617
+ ++ Q P F N I L+ + EL W AL+K+ L +V
Sbjct: 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKK-ELDERVEW-ALKKAALWDEV--- 139
Query: 618 RSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
+ +L+ D LS G++Q L +ARAL K K
Sbjct: 140 KDRLN-DYPS-NLSGGQRQRLVIARALAMKPK 169
|
Length = 253 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FN 583
I+G GAGKS+LL AL + SG++ ++ + S E L +V+PQ+ L F
Sbjct: 30 LAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89
Query: 584 GT----IRYNLDPFGRCHDTE-----LWDALEK---SHLKSKVVTMRSKLDSDVQGDQLS 631
T ++ P + E AL S L + LS
Sbjct: 90 FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT------------LS 137
Query: 632 LGEKQLLCLARAL 644
GE+Q + LAR L
Sbjct: 138 GGEQQRVQLARVL 150
|
Length = 259 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---EL-ETLRSRLSVIPQDPVLF 582
I+G +G+GKS+++ L RL+E + GQ+ ID DIA + EL E R +++++ Q L
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118
Query: 583 NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRS-KLDSDVQG--DQLSLGEKQLLC 639
+ FG EL + + + +R L++ D+LS G +Q +
Sbjct: 119 PHMTVLDNTAFG----MELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVG 174
Query: 640 LARAL 644
LARAL
Sbjct: 175 LARAL 179
|
Length = 400 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 439 FKNVSLRYRDNWPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
K +L + L VL NVS +N GE + + G +G+GKS+LL +L+ GQI +
Sbjct: 11 SKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV 70
Query: 498 ----DDFDIASVE----LETLRSR-------LSVIPQ--------DPVLFNGIVGRTGAG 534
+ D+ + E LE R+ L VIP+ +P+L G+
Sbjct: 71 RHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARA 130
Query: 535 KSSLLVALFRLVE 547
K++ L+ L E
Sbjct: 131 KAADLLTRLNLPE 143
|
Length = 235 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----S 549
I+ D ++ + + L IP++ V ++G +G GKS+ L + R+ +L
Sbjct: 40 IEARDLNVFYGDEQALDDVSMDIPENQV--TAMIGPSGCGKSTFLRCINRMNDLIDAARV 97
Query: 550 SGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIR----YNLDPFGR--CHDTEL 601
G++ ++ A V+ LR R+ ++ Q P F +I Y L G D +
Sbjct: 98 EGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERV 157
Query: 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
++L ++ L +V + +LDS G LS G++Q LC+ARA+
Sbjct: 158 EESLRRAALWDEV---KDQLDS--SGLDLSGGQQQRLCIARAI 195
|
Length = 285 |
| >gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 19/173 (10%)
Query: 90 EVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 149
++ + S+L A+ + + F L + +I +L S F + F
Sbjct: 9 KLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALV---------FAFLL 59
Query: 150 LMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLF--------AFLMICF 201
L++ FP PL + +L + F Y + +NM +F L + +
Sbjct: 60 LLLLLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTL-Y 118
Query: 202 VFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC-FVFPWF 253
W L L+ L L+ + V+LR ++ + S+L + L+I F P++
Sbjct: 119 FLLWLVLVGLLPALLIVLVIIRYYRVWLRRLWARLVSILLSLLVILAFAAPFY 171
|
Length = 555 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 527 IVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDI--ASVELETLRSRLSVIPQDP 579
++G +G GKS+ L L R+ +L G++ +D +I V++ LR R+ ++ Q P
Sbjct: 35 LIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94
Query: 580 VLFNGTIRYNLDPFGRCH---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
F +I N+ R H D + D + + LK + K D +LS G++Q
Sbjct: 95 NPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154
Query: 637 LLCLARALLRK 647
LC+AR + K
Sbjct: 155 RLCIARTIAVK 165
|
Length = 251 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 46/157 (29%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-T 585
I+G +G GKS+LL + L + +SG++ +D + + + Q+ L T
Sbjct: 34 ILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALLPWLT 88
Query: 586 IRYN----LDPFGRCHDTELWDA---LEKSHLKSKVVTMRSKLDSDVQG---DQLSLGEK 635
+ N L+ G+ A LE L + QLS G +
Sbjct: 89 VLDNVALGLELRGKSKAEARERAKELLELVGLA------------GFEDKYPHQLSGGMR 136
Query: 636 QLLCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
Q + +ARAL TRP K+L++D
Sbjct: 137 QRVAIARAL-------------ATRP-----KLLLLD 155
|
Length = 248 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 8e-05
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502
+L VS + GE ++GR G GK++LL L L+ + SG I++D DI
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDI 64
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 9e-05
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLAN--VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
++ + ++ R+ P V+AN VS + GE ++G GAGKS+L+ LF L + SG+
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 495 IKID 498
I++D
Sbjct: 61 IRVD 64
|
Length = 501 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 9e-05
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 525 NGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDI--ASVELETLRSRLSVIPQ 577
N ++G +G GK++ L A+ R+ +L+ +G+I +D DI V+ +R R+ ++ Q
Sbjct: 33 NALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQ 92
Query: 578 DPVLFNGTIRYN-----LDPFGRCHDTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQL 630
P F ++ L G L + E+S L+ + ++ +L + G L
Sbjct: 93 KPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS-LRGAALWDEVKDRLKTPATG--L 149
Query: 631 SLGEKQLLCLARAL 644
S G++Q LC+ARAL
Sbjct: 150 SGGQQQRLCIARAL 163
|
Length = 252 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLF 582
I+G +G+GKS+LL + L+ SG++ ID DI+ + EL LR R+ ++ Q LF
Sbjct: 30 AIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89
Query: 583 NG-TIRYN----LDPFGRCHDTELWD-ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
+ T+ N L R + E+ + LEK V +R D +LS G K+
Sbjct: 90 DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEA----VGLRGAEDLYP--AELSGGMKK 143
Query: 637 LLCLARAL 644
+ LARAL
Sbjct: 144 RVALARAL 151
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
I +N+SLR D L L+ ++F + GE + I G +GAGK+SLL AL
Sbjct: 390 DHGITLENLSLRTPDGQTL-LSELNFEVRPGERLLITGESGAGKTSLLRAL 439
|
Length = 604 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 50/161 (31%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQD----PVL 581
++GR G GK++LL L L+ + SG I++D DI + E R+ ++ +PQ P L
Sbjct: 31 VLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90
Query: 582 FNGTIRYNL----DPFGRCHDT------ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLS 631
T+ NL R EL+ L++ M + +G LS
Sbjct: 91 ---TVEENLLTGLAALPRRSRKIPDEIYELFPVLKE---------MLGR-----RGGDLS 133
Query: 632 LGEKQLLCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
G++Q L +ARAL +TRP K+L++D
Sbjct: 134 GGQQQQLAIARAL-------------VTRP-----KLLLLD 156
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL--VALFRLVELS- 491
G + KNVSLR + +LANV+F I GE + ++G +G GKS+LL + + S
Sbjct: 1 GMLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSC 58
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
+G++ +++ + L + ++ ++ QD +LF
Sbjct: 59 TGELWLNEQRLDM--LPAAQRQIGILFQDALLF 89
|
Length = 213 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 13/82 (15%)
Query: 432 PRQG--TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV- 488
PR G I+ +N+S + D L++ ++SF++ G +G++G GAGKS+ LFR++
Sbjct: 316 PRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKST----LFRMIT 369
Query: 489 ---ELSSGQIKI-DDFDIASVE 506
+ SG IKI + +A V+
Sbjct: 370 GQEQPDSGTIKIGETVKLAYVD 391
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL--- 490
Q ++ +N++L Y D L ++S RI +G +G GKS+LL R+ +L
Sbjct: 23 QTALEVRNLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDN 80
Query: 491 --SSGQIKIDDFDI--ASVELETLRSRLSVIPQDP 521
G+I++D +I V++ LR R+ ++ Q P
Sbjct: 81 CRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115
|
Length = 272 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ F VS Y L VS IN GE + ++G GAGK++LL L +SG+I
Sbjct: 6 LSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63
Query: 497 IDDFDIASVEL-ETLRSRLSVIPQDPVLF 524
D DI + + +R ++++P+ +F
Sbjct: 64 FDGKDITDWQTAKIMREAVAIVPEGRRVF 92
|
Length = 237 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS----VELETLRSRLSVIPQDPVL 581
I GR+G+GK++L+ + L G+I ++ + + L + R+ + Q+ L
Sbjct: 27 AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARL 86
Query: 582 F-NGTIRYNLD--------PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632
F + ++R NL R + + L HL ++ +LS
Sbjct: 87 FPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP------------GRLSG 134
Query: 633 GEKQLLCLARALLRK 647
GEKQ + + RALL
Sbjct: 135 GEKQRVAIGRALLSS 149
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
VL N+SF++ G+ + + G TG+GKSSLL+ + +E S G+IK
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK 484
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--------V 488
I+ +N S Y + + NV+ +I + I+G +G GK++LL ++ R+ V
Sbjct: 4 IEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV 61
Query: 489 ELSSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
E G+I DI +++ R ++ ++ Q P F
Sbjct: 62 E---GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96
|
Length = 250 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
I G GAGK++LL L L+ +G++ I +V ++ L + Q + T
Sbjct: 33 ITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92
Query: 587 RYNL---DPFGRCHDTE-LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
NL F + +W+AL + V + D V QLS G+++ + LAR
Sbjct: 93 LENLHFWQRFHGSGNAATIWEALAQ-------VGLAGLEDLPVG--QLSAGQQRRVALAR 143
Query: 643 ALL 645
L
Sbjct: 144 LWL 146
|
Length = 209 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ KN+S R+ + N+S + G++G GAGKS+LL + ++ +SG+I
Sbjct: 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 497 ID 498
D
Sbjct: 59 FD 60
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I VS Y D V+ +SF + GE G++G GAGKS++ + + +G+I
Sbjct: 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 497 IDDFDIASVELETLRSRLSVIPQ 519
+ + + R+R+ V+PQ
Sbjct: 100 VLGVPVPA-RARLARARIGVVPQ 121
|
Length = 340 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ-DPVLFNG 584
G++G GAGKS++ + + +G+I + + + R+R+ V+PQ D +
Sbjct: 71 GLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEF 129
Query: 585 TIRYNLDPFGR-----CHDTE--LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
T+R NL FGR + E + LE + L+SK D + LS G K+
Sbjct: 130 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA---------DARVSDLSGGMKRR 180
Query: 638 LCLARALL 645
L LARAL+
Sbjct: 181 LTLARALI 188
|
Length = 340 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513
L VSF I GE + I+G+ G+GKS+ + L E G++KID + + + LR +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 514 LSVIPQDPVLFNGIVGRT 531
+ ++ Q+P N VG T
Sbjct: 83 IGMVFQNPD--NQFVGAT 98
|
Length = 277 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL--- 510
+VSF + GE +GIVG +G+GK++LL AL + +G++ D +L L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 511 ------RSRLSVIPQDP 521
R+ + Q P
Sbjct: 82 ERRRLLRTEWGFVHQHP 98
|
Length = 258 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDIASVELET--LR 569
IP++ V ++G +G GKS+LL R+ +L G I + +I + LR
Sbjct: 29 IPKNRV--TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86
Query: 570 SRLSVIPQDPVLFNGTIRYNLDPFGRCH---DTELWDALEKSHLKSKVV--TMRSKLDSD 624
++ ++ Q P F +I N+ R H + + D + + LK + ++ +L
Sbjct: 87 RKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDS 146
Query: 625 VQGDQLSLGEKQLLCLARAL 644
LS G++Q LC+AR L
Sbjct: 147 ALS--LSGGQQQRLCIARTL 164
|
Length = 253 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV----ELS 491
+K + V Y D V+ + + GE I +VG +G GKS+LL R+V ++
Sbjct: 3 GLKLQAVRKSY-DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLL----RMVAGLERIT 57
Query: 492 SGQIKIDD 499
SG+I I
Sbjct: 58 SGEIWIGG 65
|
Length = 356 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS---LLVALFRLV 488
+ ++FK+VS Y D+ L ++SF I G ++G G+GKS+ L+ L
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
+ + +I +D + + + +R ++ ++ Q+P N VG T
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPD--NQFVGAT 101
|
Length = 282 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE----LETLRSRLSVIPQDPVLF 582
+ G +G+GK+SL+ + L G+I+++ + E L + R+ + QD LF
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 583 -----NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
G +RY + R +L L HL + LS GEKQ
Sbjct: 89 PHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHL---LDRYPGT---------LSGGEKQR 136
Query: 638 LCLARALLRK 647
+ + RALL
Sbjct: 137 VAIGRALLTA 146
|
Length = 352 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVELETLR 569
IP+ V +G +G GKS+ L L R+ + +G+I +D DI +++ LR
Sbjct: 42 IPEKTV--TAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELR 99
Query: 570 SRLSVIPQDPVLFNGTIRYNLDPFGRCH-----DTELWDALEKSHLKSKVVTMRSKLDSD 624
+R+ ++ Q P F +I N+ R H EL + +E S L+ + K
Sbjct: 100 ARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETS-LRKAGLWEEVKDRLH 158
Query: 625 VQGDQLSLGEKQLLCLARAL 644
G LS G++Q LC+ARA+
Sbjct: 159 EPGTGLSGGQQQRLCIARAI 178
|
Length = 267 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-04
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 13/82 (15%)
Query: 432 PRQGT--IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV- 488
PR G I+ +N+S + D L++ ++SF + G +GI+G GAGKS+ LF+++
Sbjct: 318 PRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKST----LFKMIT 371
Query: 489 ---ELSSGQIKI-DDFDIASVE 506
+ SG IKI + +A V+
Sbjct: 372 GQEQPDSGTIKIGETVKLAYVD 393
|
Length = 556 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIAS--VELETLRSRLSVIPQDP 579
I+G +G GKS+ L A+ R+ +L ++G + D DI + LR ++ ++ Q P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 580 VLFNGTIRYNLDPFGRCH----DTELWDALEKSHLKSKVV-TMRSKLDSDVQGDQLSLGE 634
F +I N+ R H +L + +EKS K+ + + +LD + G LS G+
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALG--LSGGQ 187
Query: 635 KQLLCLARAL 644
+Q LC+AR L
Sbjct: 188 QQRLCVARTL 197
|
Length = 286 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL----- 510
+VSF + GE +GIVG +G+GKS+LL L + G A +EL L
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 511 ----RSRLSVIPQDP 521
R+ + Q+P
Sbjct: 81 RRLMRTEWGFVHQNP 95
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLFN- 583
I+G G+GKS+L L ++E +SG+I I+D + + R+ +I QDP N
Sbjct: 43 AIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102
Query: 584 ----GTIRYNLD-PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
G I LD P D E ++ ++V + ++ L+ G+KQ +
Sbjct: 103 RLRIGQI---LDFPLRLNTDLEPEQRRKQIFETLRMVGLLPD-HANYYPHMLAPGQKQRV 158
Query: 639 CLARALL 645
LARAL+
Sbjct: 159 ALARALI 165
|
Length = 267 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 18/128 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ----DPVL 581
G++G GAGK++ L L L +G I + + S R R+ V+PQ DP
Sbjct: 37 GLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS-RARHARQRVGVVPQFDNLDP-- 93
Query: 582 FNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMR--SKLDS--DVQGDQLSLGEKQL 637
+ T+R NL FGR + L + ++ V + +KL++ D + +LS G K+
Sbjct: 94 -DFTVRENLLVFGR------YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRR 146
Query: 638 LCLARALL 645
L LARAL+
Sbjct: 147 LTLARALV 154
|
Length = 306 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I+ KN+ ++ VL + + GE + I+G +G+GK++LL + L + +G I
Sbjct: 3 AIEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60
Query: 496 KIDDFDI 502
++ D I
Sbjct: 61 RVGDITI 67
|
Length = 250 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL----R 511
+VSF + GE +GIVG +G+GK++LL + + +G + D +L T+ R
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 512 SRL-----SVIPQDP 521
RL + Q+P
Sbjct: 84 RRLLRTEWGFVHQNP 98
|
Length = 258 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 527 IVGRTGAGKSSLLVALFRL---VELS--SGQIKIDDFDIAS--VELETLRSRLSVIPQDP 579
++G +G+GKS+ L +L R+ ++++ +GQI DI + + +R + ++ Q P
Sbjct: 51 LIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110
Query: 580 VLFNGTIRYN----LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
F +I N L+ G L + +E S LK + + K D LS G++
Sbjct: 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETS-LKQAALWDQVKDDLHKSALTLSGGQQ 169
Query: 636 QLLCLARALLRK 647
Q LC+ARA+ K
Sbjct: 170 QRLCIARAIAVK 181
|
Length = 267 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV------- 505
VL VS + N G+ I I+G +G+GKS+ L + L + S G I ++ I V
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 506 ------ELETLRSRLSVIPQ 519
+L LR+RL+++ Q
Sbjct: 80 KVADKNQLRLLRTRLTMVFQ 99
|
Length = 257 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 502 IASVELETLRS--RLSVIPQDPVLFNGIVGRTGAGKSSLL----VALFRLVELSSGQIKI 555
I + L+ RS + + IVG GAGKSS+L AL+ +
Sbjct: 3 ILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAF-SL 61
Query: 556 DDF-----DIASVELE 566
DD ASVELE
Sbjct: 62 DDLIRAGEKSASVELE 77
|
Length = 908 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL---- 490
G I K++ L Y D L ++ I + ++G +G GKS+ L L R+ +L
Sbjct: 2 GKISVKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 491 -SSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
G++ +D DI + +++ LR R+ ++ Q P F
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96
|
Length = 250 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVEL 507
VL V+ I ++G +G+GKS+LL RL+EL SG++ +D DI +++
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 508 ETLRSRLSVIPQDP 521
LR R+ ++ Q P
Sbjct: 78 IELRRRVQMVFQIP 91
|
Length = 250 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 30/160 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFNG 584
G++G GAGK++ + +V +G I IDD DI+ + L R + +PQ+ +F
Sbjct: 33 GLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92
Query: 585 -----------TIRYNLDPFGRC-HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632
IR +L R EL + HL+ D G LS
Sbjct: 93 LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR------------DSMGQSLSG 140
Query: 633 GEKQLLCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
GE++ + +ARAL K + + P D + V+D
Sbjct: 141 GERRRVEIARALAANPKF-----ILLDEPFAGVDPISVID 175
|
Length = 241 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 454 LANVSFRINHGENI-GIVGRTGAGKSSLL----VALFRLVELSSGQIKIDDF-----DIA 503
++ I IVG GAGKSS+L AL+ +DD A
Sbjct: 14 FKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAF-SLDDLIRAGEKSA 72
Query: 504 SVELE 508
SVELE
Sbjct: 73 SVELE 77
|
Length = 908 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD----FDIASVELETL 510
N S I GE ++G +G+GKS+LL A+ L +S G + + D D+A+ + TL
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 511 R 511
R
Sbjct: 101 R 101
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 22/166 (13%)
Query: 495 IKID--DFDIASVELETLRS-RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL--- 548
+KID D + + L+ + + + V F +G +G GKS+ L R+ +L
Sbjct: 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAF---IGPSGCGKSTFLRLFNRMNDLIPA 58
Query: 549 --SSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTI----RYNLDPFGRCHDTE 600
G+I+ID +I V+++ LR + ++ Q P F +I Y L G +
Sbjct: 59 TRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAF 118
Query: 601 LWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ +E++ LK + ++ KL LS G++Q LC+ARA+
Sbjct: 119 IRQRVEET-LKGAALWDEVKDKLKESAFA--LSGGQQQRLCIARAM 161
|
Length = 250 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 510
VL +S I GE + IVG +G+GKS+L+ L L + +SG ++ D+A+++ + L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
|
Length = 648 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+ G TG+GKSSLL+ + +E S G+IK R+S PQ + GTI
Sbjct: 457 VAGSTGSGKSSLLMMIMGELEPSEGKIKHS-------------GRISFSPQTSWIMPGTI 503
Query: 587 RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD---QLSLGEKQLLCLARA 643
+ N+ FG +D + ++ K+ + + + + D V G+ LS G++ + LARA
Sbjct: 504 KDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARA 562
Query: 644 LLR 646
+ +
Sbjct: 563 VYK 565
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD--FDIASVELETLR 511
L+N++ RI G+ IVG+ G GKSSLL+A+ ++ G++ + S E R
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 512 SRLSV--IPQDPVLFNGIV 528
+R SV Q P L N V
Sbjct: 77 NRYSVAYAAQKPWLLNATV 95
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
I G TG+GK+SLL+ + +E S G+IK R+S Q + GTI
Sbjct: 68 ITGSTGSGKTSLLMLILGELEPSEGKIKHS-------------GRISFSSQFSWIMPGTI 114
Query: 587 RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD---QLSLGEKQLLCLARA 643
+ N+ FG +D + ++ K+ + +T + D+ V G+ LS G++ + LARA
Sbjct: 115 KENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARA 173
Query: 644 LLR 646
+ +
Sbjct: 174 VYK 176
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I VS Y D +V+ ++SF I GE G++G GAGKS++ L ++ G+I
Sbjct: 5 IDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 497 IDDFDIASVELETLRSRLSVIPQ 519
+ + S R + V+PQ
Sbjct: 63 VLGEPVPS-RARLARVAIGVVPQ 84
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
G++G GAGKS+LL + ++ +SG+I D +L + S+I P+ N T
Sbjct: 30 GLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIG---SLIESPPLYENLT 86
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL 645
R NL + H T L L S + + + + Q SLG KQ L +A ALL
Sbjct: 87 ARENL----KVHTTLL--GLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALL 140
Query: 646 RKTK 649
K
Sbjct: 141 NHPK 144
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGT 585
++G +G GK++LL L + SG I +D D+ +V LR ++++ Q LF + T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD----QLSLGEKQLLCLA 641
+ N+ FG + ++ +K +V+ + + D QLS G++Q + LA
Sbjct: 59 VEENV-AFGL-----KMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALA 112
Query: 642 RALLRKTK 649
RAL+ K K
Sbjct: 113 RALVFKPK 120
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 26/137 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID-------------DFDIASVELETLRSRL 572
++G +G GKS+ L L R+ +L G IKI+ +FDI LE LR ++
Sbjct: 37 ALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNFDI----LE-LRRKI 90
Query: 573 SVIPQDPVLFNGTIRYNLDPFGRCHDT----ELWDALEKSHLKSKVVT-MRSKLDSDVQG 627
++ Q P F +I N+ + H T +L + +E+S KS + ++ KL+++
Sbjct: 91 GMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNAL- 149
Query: 628 DQLSLGEKQLLCLARAL 644
LS G++Q LC+AR L
Sbjct: 150 -SLSGGQQQRLCIARTL 165
|
Length = 254 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS----- 549
I + + I+ E +++ IP+ V ++G +G GKS++L +L R+ +L
Sbjct: 14 ISLQNVTISYGTFEAVKNVFCDIPRGKV--TALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 550 SGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHD-TELWDAL 605
G++ D D+ V+ +R R+ ++ Q P F +I N+ FG R + T D L
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENI-AFGARINGYTGDMDEL 130
Query: 606 EKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ L+ V K + G LS G++Q LC+AR +
Sbjct: 131 VERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI 169
|
Length = 269 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQ 577
G++G +GAGKS+L+ + L +SG++ +D D+ ++ EL R ++ +I Q
Sbjct: 35 GVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQ 89
|
Length = 343 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 6e-04
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD--FDIASVELETLRSRLSVIPQDPVLF- 582
++G GAGKS+L+ L + SG+I ID +S + L + ++ + Q+ L
Sbjct: 38 ALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP-RDALAAGIATVHQELSLVP 96
Query: 583 NGTI-------RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ---GDQLSL 632
N ++ R FG A+ + +++ + R LD D GD LS+
Sbjct: 97 NLSVAENIFLGREPTRRFGLID----RKAMRR---RARELLARLGLDIDPDTLVGD-LSI 148
Query: 633 GEKQLLCLARALLRKTK 649
++Q++ +ARAL +
Sbjct: 149 AQRQMVEIARALSFDAR 165
|
Length = 500 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ V Y + GE + I+G +GAGKS+LL + +E +SG IK
Sbjct: 1 LALDKVRYEYEHLP----MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56
Query: 497 IDDFD 501
++D
Sbjct: 57 VNDQS 61
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 527 IVGRTGAGKSSL--LVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-N 583
IVG +G+GKS+L L+A F + SG++ I+ D+ + +S++ Q+ LF +
Sbjct: 29 IVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTA--APPADRPVSMLFQENNLFAH 84
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLA 641
T+ N+ G +L + +V R L + +LS GE+Q + LA
Sbjct: 85 LTVEQNVG-LGLSPGLKL---TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALA 140
Query: 642 RALLR 646
R L+R
Sbjct: 141 RVLVR 145
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 16/121 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG TG GK+SL+ A+ L ELS + +SV +R ++ +PQ +FN T+
Sbjct: 648 IVGGTGEGKTSLISAM--LGELSHAET-------SSV---VIRGSVAYVPQVSWIFNATV 695
Query: 587 RYNLDPFGRCHDTE-LWDALEKSHLKSKVVTM--RSKLDSDVQGDQLSLGEKQLLCLARA 643
R N+ FG ++E W A++ + L+ + + R + +G +S G+KQ + +ARA
Sbjct: 696 RENI-LFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARA 754
Query: 644 L 644
+
Sbjct: 755 V 755
|
Length = 1495 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 524 FNGIVGRTGAGKSSLLVAL--FRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 581
I+G +GAGKS+LL AL R SG++ I+ ++ + R + +PQD +L
Sbjct: 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR---PLDKRSFRKIIGYVPQDDIL 93
Query: 582 F-NGTIRYNLD 591
T+R L
Sbjct: 94 HPTLTVRETLM 104
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 31/146 (21%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-- 581
F ++G GAGKS+LL A+ ++ +SGQI ID D+ + + L+ + QDP+
Sbjct: 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93
Query: 582 -FNGTIRYNLDPFGRCHDTELWD----------ALEKSHLKSKVVTMRS-------KLDS 623
TI NL L + AL + S + +L
Sbjct: 94 APELTIEENL---------ALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSD 144
Query: 624 DVQGDQLSLGEKQLLCLARALLRKTK 649
+ LS G++Q L L A L K
Sbjct: 145 RI--GLLSGGQRQALSLLMATLHPPK 168
|
Length = 263 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505
+ +VS + GE +G++G GAGK++L + + SSG + DI +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL 71
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+ ++ +++ RY ++ VL VS + N G+ I I+G +G+GKS+ L + L + S+G
Sbjct: 4 ENALEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAG 61
Query: 494 QIKIDDFDIASV-------------ELETLRSRLSVIPQDPVLFN 525
I+++ +I +L+ LR+RL ++ Q FN
Sbjct: 62 SIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH---FN 103
|
Length = 256 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALF--RLVELSSGQIKIDDFDIASVELETL 510
+L V+ + GE I+G G+GKS+L + E++SG I D+ +E +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE- 73
Query: 511 RSRLSVI--PQDPVLFNGI 527
R+R + Q P G+
Sbjct: 74 RARAGLFLAFQYPEEIPGV 92
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 437 IKFKNVSLRYRD-NWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
IK +NVS RY + +V A NVS + GE GIVG +GAGK++L + ++E +SG
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 494 QI 495
++
Sbjct: 340 EV 341
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
L + N V + F ++ GE + + G GAGK++LL L L+ + SGQI+ID
Sbjct: 17 LAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71
|
Length = 214 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K + ++ Y D L ++ I GE I+G GAGKS+L L +++ SSG+I
Sbjct: 6 LKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 497 IDD--FDIASVELETLRSRLSVIPQDP 521
D D + L LR + ++ QDP
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDP 91
|
Length = 283 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 576
I + ++F ++G G+GKS+L + L L + SG+I +D +++ +LE R S +
Sbjct: 346 IKRGELVF--LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 577 QDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
D LF+ + + E W L++ L K D +LS G+K+
Sbjct: 404 SDYHLFDQLL--GPEGKASPQLIEKW--LQRLELAHKTSLN----DGRFSNLKLSTGQKK 455
Query: 637 LLCLARALL 645
L L ALL
Sbjct: 456 RLALLLALL 464
|
Length = 546 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 9e-04
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETL 510
L NVS + G+ G++G +GAGKS+L+ + L +SG + +D D+ ++ EL
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542
R ++ +I Q FN + RT G +L + L
Sbjct: 81 RRQIGMIFQH---FNLLSSRTVFGNVALPLEL 109
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 9e-04
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L +VSF + GE G++G GAGK++L + + +SG + D DI + +
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIA 73
Query: 513 RL---------SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE 547
RL + P+ VL N +V S LL+A R E
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREE 117
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG 584
G++GR GAGKS+LL L + SG + + + + L L+ + + NG
Sbjct: 52 GLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGR--ENIYLNG 109
Query: 585 TIRYNLDP------FGRCHD-TELWDALEKSHLKSKVVTMRSKL----DSDVQGDQLSLG 633
+ L + +EL D ++ +K+ M+++L + ++ D L +
Sbjct: 110 RL-LGLSRKEIDEKIDEIIEFSELGDFIDL-PVKTYSSGMKARLAFAIATALEPDILLID 167
Query: 634 EK--------QLLCLARALLRKTKKKKKSGVNITRPVTS----CDKVLVMDNGQ 675
E Q C R LR+ K+ K+ + ++ +S CD+ LV++ G+
Sbjct: 168 EVLAVGDAAFQEKCQRR--LRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515
+VSF + GE +G+ G GAG++ L+ L+ + +SG + +D ++ +
Sbjct: 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS--------- 320
Query: 516 VIPQDPVLFNGIV 528
PQD L NGIV
Sbjct: 321 --PQDG-LANGIV 330
|
Length = 501 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
Q I +V++ +R N L + SF + G +VG G+GKS+L AL V L+SG
Sbjct: 4 QAGIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG 62
Query: 494 QIKIDDFDIASVELETLRSRL-SVIPQD-------PVLFNGIV--GRTG 532
+I I + + L+ L + +PQ PVL +V GR G
Sbjct: 63 KISI----LGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYG 107
|
Length = 272 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 38/148 (25%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDIAS--VELETLRSRLSVIPQD 578
I+G +G GKS+ L L R+ EL S G+++ + +I V L LR ++S++
Sbjct: 37 AIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPK 96
Query: 579 PVLFNGTIRYN---------------LDPF--GRCHDTELWDALEKSHLKSKVVTMRSKL 621
P LF ++ N +D D +LWD +K K+ +S L
Sbjct: 97 PNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD-----EIKHKI--HKSAL 149
Query: 622 DSDVQGDQLSLGEKQLLCLARALLRKTK 649
D LS G++Q LC+ARAL K K
Sbjct: 150 D-------LSGGQQQRLCIARALAVKPK 170
|
Length = 261 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L +SF I GE +G +G GAGK++ L L L++ +SG++++ + +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWKRRKKFLR 94
Query: 513 RLSVI 517
R+ V+
Sbjct: 95 RIGVV 99
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 30/145 (20%)
Query: 520 DPVLFNGIV----GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS-- 573
D L G V G GAGKS+L+ + +V SG ++I +RL+
Sbjct: 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG---------NPCARLTPA 81
Query: 574 --------VIPQDPVLF-NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSD 624
++PQ+P+LF N +++ N+ FG +K + + +LD D
Sbjct: 82 KAHQLGIYLVPQEPLLFPNLSVKENI-LFGLPKR-----QASMQKMKQLLAALGCQLDLD 135
Query: 625 VQGDQLSLGEKQLLCLARALLRKTK 649
L + ++Q++ + R L+R ++
Sbjct: 136 SSAGSLEVADRQIVEILRGLMRDSR 160
|
Length = 510 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSL--LVALFRLVELSSGQ 552
+ +DD S +R L+V + V I+G +GAGKS+L L+A F +SG+
Sbjct: 2 LALDDVRF-SYGHLPMRFDLTVPAGEIV---AILGPSGAGKSTLLNLIAGF--ETPASGE 55
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGRCHDTELWDALEKSHLK 611
I I+ D + +S++ Q+ LF T+ N+ G +L +A ++ K
Sbjct: 56 ILINGVDHTA--SPPAERPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQR--EK 109
Query: 612 SKVVTMRSKLDS--DVQGDQLSLGEKQLLCLARALLR 646
+ + L +LS G++Q + LAR L+R
Sbjct: 110 VEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR 146
|
Length = 231 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVELETLRSRLSVIPQDP 579
++G +G GKS+ L ++ R+ +L S G+I + +I +++ + LR + ++ Q P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 580 VLFNGTIRYN----LDPFGRCHDTELWDALEKSHLKSKVV-TMRSKLDSDVQGDQLSLGE 634
F +I N L G + L + +E+S K+ + ++ +L S LS G+
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSAL--SLSGGQ 169
Query: 635 KQLLCLARALLRK 647
+Q LC+AR L K
Sbjct: 170 QQRLCIARTLAMK 182
|
Length = 268 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+I+ +NVS R+ ++ L +VS I GE + ++G +G+GK++LL + L SG I
Sbjct: 2 SIEVRNVSKRF-GDFV-ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 496 KIDDFDIASV 505
D V
Sbjct: 60 LFGGEDATDV 69
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 434 QGT-IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
QGT + VS RY + VL + I G+ + +VGR+G GKS+LL L L S+
Sbjct: 9 QGTPLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA 66
Query: 493 GQI 495
G++
Sbjct: 67 GEL 69
|
Length = 257 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLF 582
I+G +G+GKS+LL + L+ G+I ID DI + EL +R R+ V+ Q LF
Sbjct: 38 AILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97
|
Length = 263 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSRLSVIPQDP 579
G+VG +G GKS+ A+ LV+ + G++ D + E +RS + +I QDP
Sbjct: 51 GVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP 107
|
Length = 331 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS- 492
Q IK +N++L Y + L NVS +I ++G +G GKS+ + L R+ +L
Sbjct: 10 QPQIKVENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN 67
Query: 493 ----GQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
G++ I+ DI V++ LR + ++ Q P F
Sbjct: 68 CRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105
|
Length = 258 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 438 KFKNVSLRYRDNWPLV-LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ +++S++ D + + +VSF + GE +GI G G G+S L+ A+ L + +SG+I
Sbjct: 259 EVEDLSVK--DRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL 316
Query: 497 IDDFDIASVE--LETLRSRLSVIPQD----------PVLFNGIVGR 530
++ D+ E R L+ +P+D + N ++GR
Sbjct: 317 LNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGR 362
|
Length = 501 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----S 491
I ++V+ Y D L +S I + +G +G GKS+ L R+ +L
Sbjct: 4 IDARDVNFWYGDFH--ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL 61
Query: 492 SGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
G+I+ID +I V+++ LR + ++ Q P F
Sbjct: 62 EGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPF 96
|
Length = 250 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
++G +G+GKS+LL + L + SG+I+++ D V ++ + Q LF
Sbjct: 30 ALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRKIGFVFQHYALFKHL 87
Query: 585 TIRYNLDPFG---RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD----QLSLGEKQL 637
T+R N+ FG R H +K++V + + + GD QLS G++Q
Sbjct: 88 TVRDNI-AFGLEIRKHPKAK--------IKARVEELLELVQLEGLGDRYPNQLSGGQRQR 138
Query: 638 LCLARAL 644
+ LARAL
Sbjct: 139 VALARAL 145
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 434 QGTIKFKNVSLRYRDNWPLV--LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+ F + + P V L ++SF G+ ++G GAGKS+LL L +
Sbjct: 2 SPYLSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD 57
Query: 492 SGQIKID 498
+G I ID
Sbjct: 58 AGSILID 64
|
Length = 501 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDI--ASVEL 565
R S +P G +G +G GKS++L +L R+ +L G + D+ V+
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 566 ETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSH--LKSKVVTMRSKLDS 623
+R + ++ Q P F+ +I N+ FG + D ++ L+ + K
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNV-AFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL 143
Query: 624 DVQGDQLSLGEKQLLCLARAL 644
V G LS G++Q LC+ARA+
Sbjct: 144 KVSGLSLSGGQQQRLCIARAI 164
|
Length = 261 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 439 FKNVSLRYR--DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSG 493
+ +V L+ + + + +L +VS + G+ + I+G +G+GK++LL A+ VE +SG
Sbjct: 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG 65
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553
QI + + + + ++ + QD +L G+ R ++ A+ RL SS I
Sbjct: 66 QILFNG---QPRKPDQFQKCVAYVRQDDILLPGLTVR----ETLTYTAILRLPRKSSDAI 118
Query: 554 K 554
+
Sbjct: 119 R 119
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS---VELETL 510
L VSF + G+ + +VG +G GKS+L L + + G++ D+ + L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 511 RSRLSVIPQDP 521
R ++ ++ Q+P
Sbjct: 91 RQKIQIVFQNP 101
|
Length = 327 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI--------ASV 505
L +V+ + GE ++G GAGKS+L+ L + E + G I I++ + A +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 506 ELETLRSRLSVIPQDPVLFNGIVGR 530
+ + LSVI + VL N +GR
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGR 105
|
Length = 510 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
+V++ R L +S + GE + +VG GAGKS+LL + L+ SG I+
Sbjct: 4 NDVAVSTR------LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAG 56
Query: 500 FDIASVELETL-RSRLSVIPQDPVLFN 525
+ + L R R + Q F
Sbjct: 57 QPLEAWSAAELARHRAYLSQQQTPPFA 83
|
Length = 248 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ +NVS+ + VL++VS + G+ + ++G GAGKS+L+ + LV G IK
Sbjct: 5 VSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK 62
|
Length = 251 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 582
+VG +G GKS+LL + L +SG++ +D + + Q L
Sbjct: 35 LVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP-----GPDRGYVFQQDALL 85
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQ 494
+ +S Y D L ++S + ++G +G GKS+ L L R+ +L G+
Sbjct: 10 RGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE 67
Query: 495 IKIDDFDIASVELE--TLRSRLSVIPQDPVLF 524
I +D +I ++ LR R+ ++ Q P F
Sbjct: 68 ILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99
|
Length = 253 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 22/161 (13%)
Query: 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559
F + ++ L + +P + G++G +GAGKS+L+ + L +SG + +D D
Sbjct: 11 FHQGTKTIQALNNVSLHVPAGQIY--GVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQD 68
Query: 560 IASV---ELETLRSRLSVIPQD-PVLFNGTIRYNLD-PFGRCHDTELWDALEKSHLKSKV 614
+ ++ EL R ++ +I Q +L + T+ N+ P EL D K +K KV
Sbjct: 69 LTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL------EL-DNTPKDEIKRKV 121
Query: 615 ------VTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
V + K DS LS G+KQ + +ARAL K
Sbjct: 122 TELLALVGLGDKHDS--YPSNLSGGQKQRVAIARALASNPK 160
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 437 IKFKNVSLRYRDNWPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
++F +V+ R+ L VL ++F + GE + ++G +G+GKS++L L L + GQI
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 496 KID 498
+++
Sbjct: 58 QVE 60
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 27/172 (15%)
Query: 362 SVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEF 421
+ AL L L +T L FT RV T L L + + + + K E
Sbjct: 378 KAADALGRLMLAG-RDMTRLAGFTARVD--TLLQVL--DDVKSGNFKRPRVEEIESGREG 432
Query: 422 GQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLAN-------VSFRINHGENIGIVGRTG 474
G+ + P +G +++++ +++ +N PLV N +SF + G N+ I G G
Sbjct: 433 GRNSNLV---PGRGIVEYQDNGIKF-ENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNG 488
Query: 475 AGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
GKSSL L L + G++ + +L +PQ P + G
Sbjct: 489 CGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLG 529
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 527 IVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELET--LRSRLSVIPQDP 579
++G +G+GKS+LL ++ R+ +L+ +G I + +I S +T LR + ++ Q P
Sbjct: 36 LIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95
Query: 580 VLFNGTIR----YNLDPFGRCHDTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLG 633
F +I Y L G D ++ D + LK + ++ +L G LS G
Sbjct: 96 NPFPMSIYENVVYGLRLKG-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG--LSGG 152
Query: 634 EKQLLCLARAL 644
++Q +C+AR L
Sbjct: 153 QQQRVCIARVL 163
|
Length = 252 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F++VS Y L V+F + GE + G +GAGKS+LL + + S+G+I
Sbjct: 2 IRFEHVSKAYLGGRQ-ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 497 IDDFDIA---SVELETLRSRLSVIPQD 520
DI + E+ LR ++ +I QD
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQD 87
|
Length = 222 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 18/63 (28%)
Query: 436 TIKFKNVSLRYR-DNWPL-----------------VLANVSFRINHGENIGIVGRTGAGK 477
+KF++V+ +Y+ N P L N+SF + GE +GI+G G+GK
Sbjct: 4 KVKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGK 63
Query: 478 SSL 480
S+L
Sbjct: 64 STL 66
|
Length = 549 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505
+VS I GE ++G +G GKS+LL L + ++GQI +D D++ V
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV 86
|
Length = 377 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 17/132 (12%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDIASVELET--LRSRLSVIPQDP 579
+G +G GKS+ L R+ + G++ ID D+ SV+ LR+++ ++ Q P
Sbjct: 36 FIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95
Query: 580 VLFNGTIRYNLDPFGRCH-----DTELWDALEKSHLKSKVVTMRSKLDSDVQGD--QLSL 632
F +I N+ + H +L + +EKS V + +L ++ +LS
Sbjct: 96 NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTS---VGLWEELGDRLKDSAFELSG 152
Query: 633 GEKQLLCLARAL 644
G++Q LC+ARA+
Sbjct: 153 GQQQRLCIARAI 164
|
Length = 251 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481
+ I N + Y D +L N+S+++N GE+ IVG GAGKS+LL
Sbjct: 256 ANEPRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLL 303
|
Length = 490 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ NV R+ L ++S I GE + ++G +GAGKS+LL + L +G+I+
Sbjct: 3 IRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 497 IDDFDIASVELETLRSR-LSVIPQDPVLF 524
++ + V +R R + + Q LF
Sbjct: 61 LNGRVLFDVSNLAVRDRKVGFVFQHYALF 89
|
Length = 345 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 502 IASVELETLRS-RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ----IKID 556
I ++++ RS + SV+ D + N I+G+ G+GKSS+L A+ + G +K D
Sbjct: 3 IEELKIKNFRSHKSSVVEFDDGI-NLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKD 61
Query: 557 DF 558
DF
Sbjct: 62 DF 63
|
Length = 880 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 468 GIVGRTGAGKSSLLVALFRL 487
G++G+TGAGKSSL ALF
Sbjct: 1 GLMGKTGAGKSSLCNALFGT 20
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 526 GIVGRTGAGKSSLLVALFRL 545
G++G+TGAGKSSL ALF
Sbjct: 1 GLMGKTGAGKSSLCNALFGT 20
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS---VELETLRSR-LSVIPQDPVLF 582
IVG +G+GKS+LL L L +SG++++D DI+ EL R R + + Q L
Sbjct: 35 IVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94
Query: 583 NG-TIRYN----LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
T N L G + E++ + V + +L+ +LS G++Q
Sbjct: 95 PDLTALENVELPLLLAGV----PKKERRERAEELLERVGLGDRLNHYPS--ELSGGQQQR 148
Query: 638 LCLARAL 644
+ +ARAL
Sbjct: 149 VAIARAL 155
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE---TLRSR--------LSV 574
IVG +G+GKS+LL L L + SSG++++ + ++ + LR+R +
Sbjct: 40 AIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99
Query: 575 IPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE 634
IP L N + L G D+ + + V + +L QLS GE
Sbjct: 100 IPNLTALENVALPLELR--GESSA----DSRAGAKALLEAVGLGKRLTH--YPAQLSGGE 151
Query: 635 KQLLCLARAL 644
+Q + LARA
Sbjct: 152 QQRVALARAF 161
|
Length = 228 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G++G GAGK++ + L L++ +SG+ + D+ E +R R+ ++ QD + +
Sbjct: 30 GLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSVDDEL 88
Query: 585 TIRYNLDPFGR 595
T NL R
Sbjct: 89 TGWENLYIHAR 99
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 40/189 (21%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET---LRSRLSVIPQD-PVL 581
G++GR+G GKS+L L L + + G + D+ ++ + R + ++ QD P
Sbjct: 41 GLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100
Query: 582 FNG--TIRYNL-DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
N T+R + +P + + + +V +RS+ D+D QLS G+ Q +
Sbjct: 101 VNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE-DADKLPRQLSGGQLQRI 159
Query: 639 CLARALLRK-------------------------TKKKKKSGVN---IT---RPVTS-CD 666
+ARAL K K ++ G IT R V S C
Sbjct: 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQ 219
Query: 667 KVLVMDNGQ 675
+V VMD GQ
Sbjct: 220 RVAVMDKGQ 228
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 18/141 (12%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVELETLR 569
IP++ V +G +G GKS+LL R+ +L G+I++D +I V++ LR
Sbjct: 48 IPKNRV--TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELR 105
Query: 570 SRLSVIPQDPVLFNGTIR----YNLDPFGRCHDTELWDALEKSHLKSKVV--TMRSKLDS 623
R+ ++ Q P F +I Y L G + L +A+E+S L+ + ++ +L
Sbjct: 106 RRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERS-LRGAALWDEVKDRLHE 164
Query: 624 DVQGDQLSLGEKQLLCLARAL 644
+ G LS G++Q L +ARA+
Sbjct: 165 NAFG--LSGGQQQRLVIARAI 183
|
Length = 272 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-T 585
I+G +GAGKS+LL + +E +SG IK++D L + +S++ Q+ LF T
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG--LAPYQRPVSMLFQENNLFAHLT 86
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL 645
+R N+ G +L +A ++ + + D +QLS G++Q + LAR L+
Sbjct: 87 VRQNIG-LGLHPGLKL-NAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLV 144
Query: 646 R 646
R
Sbjct: 145 R 145
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| KOG0054|consensus | 1381 | 100.0 | ||
| KOG0058|consensus | 716 | 100.0 | ||
| KOG0055|consensus | 1228 | 100.0 | ||
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| KOG0056|consensus | 790 | 100.0 | ||
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057|consensus | 591 | 100.0 | ||
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0054|consensus | 1381 | 100.0 | ||
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.98 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.98 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.98 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.98 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.98 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.98 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.98 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.98 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.98 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.98 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.98 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.98 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.98 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.98 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.98 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.97 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.97 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.97 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.97 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.97 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.97 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.97 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.97 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.97 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.97 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.97 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.97 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.97 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.97 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.97 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.97 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.97 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.97 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.97 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.97 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.97 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.97 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.97 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.97 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.97 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.97 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.97 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.97 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.97 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.97 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.97 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.97 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.97 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.97 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.97 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.97 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.97 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.97 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.97 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.97 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.97 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.97 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.97 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.97 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.97 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.97 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.97 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.97 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.97 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.97 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.97 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.97 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.97 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.97 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.97 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.97 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.96 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.96 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.96 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.96 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.96 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.96 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.96 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.96 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.96 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.96 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.96 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.96 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.96 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.96 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.96 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.96 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.96 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.96 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.96 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.96 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.96 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.96 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.96 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.96 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.95 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.95 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.95 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.95 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.95 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.95 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.95 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.95 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.95 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.95 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.95 | |
| KOG0060|consensus | 659 | 99.95 | ||
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.94 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.94 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.94 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.94 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.94 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.94 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.94 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.94 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.94 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.94 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.93 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.93 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.93 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.93 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.93 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.93 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.93 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.93 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.93 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.93 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.92 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.92 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.92 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.92 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.92 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.92 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.92 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.91 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.91 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.91 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.91 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.91 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.91 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.91 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.9 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.9 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.9 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.9 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.9 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.9 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.88 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.88 | |
| KOG0064|consensus | 728 | 99.87 | ||
| KOG0061|consensus | 613 | 99.87 | ||
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.87 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.87 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.87 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.86 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.86 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.85 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.84 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.84 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.84 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.84 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.84 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.84 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.84 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.84 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.83 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.83 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.83 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.82 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.82 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.81 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.8 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.8 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.77 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.76 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.76 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.75 | |
| KOG0059|consensus | 885 | 99.74 | ||
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.73 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.72 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.71 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.7 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.7 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.7 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.68 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.68 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.65 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.62 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.61 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.6 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.57 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.57 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.53 | |
| KOG0927|consensus | 614 | 99.53 | ||
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.5 | |
| KOG0065|consensus | 1391 | 99.49 | ||
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.48 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.46 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.44 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.43 | |
| KOG0927|consensus | 614 | 99.42 | ||
| KOG2355|consensus | 291 | 99.37 | ||
| KOG0062|consensus | 582 | 99.34 | ||
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.31 | |
| KOG0062|consensus | 582 | 99.29 | ||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.29 | |
| KOG0065|consensus | 1391 | 99.26 | ||
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.26 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.25 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.24 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.23 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.21 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.2 | |
| KOG0066|consensus | 807 | 99.19 | ||
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.18 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.17 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.17 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.14 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.14 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.13 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.13 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.12 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.11 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.1 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.1 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.1 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.08 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.08 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.06 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.06 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.03 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.02 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.0 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 98.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 98.97 | |
| PRK11098 | 409 | microcin B17 transporter; Reviewed | 98.95 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 98.91 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 98.87 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 98.86 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.84 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.83 | |
| PRK12369 | 326 | putative transporter; Reviewed | 98.79 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.77 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 98.77 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 98.75 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.74 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.68 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 98.64 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 98.64 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.59 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 98.59 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 98.54 | |
| KOG0063|consensus | 592 | 98.53 | ||
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.5 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 98.5 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 98.5 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 98.48 | |
| KOG0058|consensus | 716 | 98.47 | ||
| KOG0057|consensus | 591 | 98.47 | ||
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 98.47 | |
| PF06472 | 281 | ABC_membrane_2: ABC transporter transmembrane regi | 98.44 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.42 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.36 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.36 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 98.35 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.33 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.33 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 98.32 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.31 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 98.3 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.3 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 98.29 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 98.29 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.28 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 98.27 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.25 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 98.22 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 98.19 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 98.18 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 98.14 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 98.14 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.13 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 98.13 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.11 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.09 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 98.09 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.09 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 98.08 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.07 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 98.07 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 98.06 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.06 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 98.05 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 98.05 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 98.04 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.03 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.03 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 98.03 | |
| KOG0066|consensus | 807 | 98.02 | ||
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 98.02 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 98.02 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 98.02 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 98.01 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 98.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 98.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 98.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 98.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 98.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 97.99 |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-81 Score=745.95 Aligned_cols=514 Identities=37% Similarity=0.600 Sum_probs=438.0
Q ss_pred hhhhhhHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhhhhHHHHHHHH
Q psy845 91 VFQNMWSMLFAFLM-ICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWS-MLFAFLMICFVFPWFALPLLIITT 168 (677)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 168 (677)
-.-.+.+|..||.. +.+..-.+++.+.+++.+.+..+.+|+|.|.+.-+.+..+ ....+|+..+++..++-.++..
T Consensus 799 G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~-- 876 (1381)
T KOG0054|consen 799 GKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTL-- 876 (1381)
T ss_pred CEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHH--
Confidence 33457799999999 7777777888899999999999999999999998877765 3445555555544444333332
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccc-cch----hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFR-SVYLRSVFQNMWSMLFAFLMICFVFPWFA-LPL----LIITTLYHLISKVFRSVYLRSVFQNMWSMLFA 242 (677)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~~----~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~ 242 (677)
.|......- -.-.+++.+ .|+..+... +|.||| +|. .|.++|.+.+++.+ ...+..++++++.+++.
T Consensus 877 -~rs~~~~~~~l~aS~~Lh~----~ml~~Ilra-pm~FFdtTP~GRILNRFSkD~~~vD~~L-p~~~~~~~~~~~~~l~~ 949 (1381)
T KOG0054|consen 877 -LRSFLFAKGGLKASRKLHD----KLLNSILRA-PMSFFDTTPTGRILNRFSKDIDTVDVLL-PFTLEFFLQSLLNVLGI 949 (1381)
T ss_pred -HHHHHHHHHHHHHHHHHHH----HHHHHHHhC-cchhcCCCCccchhhhcccchHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 221111111 223344444 444444443 678886 684 44466666676655 45778899999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHH
Q psy845 243 FLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE 322 (677)
Q Consensus 243 ~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~ 322 (677)
++++.+..||++++++|+.+++++++++|.+..|+++|.+..++|++.+|++|+++|+.|||+|+.|++|.++++++.|.
T Consensus 950 ~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~ 1029 (1381)
T KOG0054|consen 950 LVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDE 1029 (1381)
T ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGS-VSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER 401 (677)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~-ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eR 401 (677)
+.+..+....+++|++.+++++..+.+.+.........+. .++|.+|..++|+..+++.++..++..+++++.+.|+||
T Consensus 1030 ~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVER 1109 (1381)
T KOG0054|consen 1030 NSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVER 1109 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999999999999999984444433333444444 789999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 402 INNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 402 I~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
+.|+. +.++|.+.+.+. ..++..||.+|+|+|+|++.+|+++.++|||||||+|+|||||||||+||||||||+
T Consensus 1110 v~eY~-~~~~E~p~~~~~-----~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~ 1183 (1381)
T KOG0054|consen 1110 VLEYT-DIPSEAPLEIEE-----SRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLI 1183 (1381)
T ss_pred HHHHh-cCCCCCCCCCcC-----CCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHH
Confidence 99999 444442222211 125678999999999999999998888999999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 482 ~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
++|.|+.+|.+|+|.|||+||.++
T Consensus 1184 ~aLFRl~e~~~G~I~IDgvdI~~i-------------------------------------------------------- 1207 (1381)
T KOG0054|consen 1184 LALFRLVEPAEGEILIDGVDISKI-------------------------------------------------------- 1207 (1381)
T ss_pred HHHHHhcCccCCeEEEcCeecccc--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHH
Q psy845 562 SVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLC 639 (677)
Q Consensus 562 ~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIa 639 (677)
.+++||++++++||||+||+||+|+||||+++++|+|||+|+|+|+++++++++|+|+|+.+ +|.|+|-||||.+|
T Consensus 1208 --gL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlC 1285 (1381)
T KOG0054|consen 1208 --GLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLC 1285 (1381)
T ss_pred --cHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 640 LARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 640 IARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
+||||||+++|+ +++++| | ++|+.+||||+|||+|+|+
T Consensus 1286 LARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1286 LARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVV 1352 (1381)
T ss_pred HHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEe
Confidence 999999999988 467888 3 8999999999999999985
|
|
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=682.11 Aligned_cols=434 Identities=23% Similarity=0.310 Sum_probs=375.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHhhhccccccccc-----hhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy845 174 SKVFRSVYLRSVFQ----NMWSMLFAFLMICFVFPWFALP-----LLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL 244 (677)
Q Consensus 174 ~~~~~~~~~~~~~q----~~~~~~f~~~~~~~~~~~f~~~-----~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v 244 (677)
+...+.+..+-.++ +|..++|++++. |++.|||.. ..|+|+|...+++-+ +..+...+.+.+..++.+.
T Consensus 204 ~~~~r~~~~~~a~~rv~~rlR~~lF~sil~-QdiaFFD~nktGeL~SRLtsD~~~vs~sv-s~nls~~lR~~~~~~g~~~ 281 (716)
T KOG0058|consen 204 ANAIRGGLLQYAGERVVARLRTDLFRSLLR-QDIAFFDENKTGELISRLTSDTQIVSNSV-SQNLSDGLRNLVQGFGGLG 281 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCCccHHHhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhHH
Confidence 34445555554444 455599999998 789999754 378888888888866 4678899999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy845 245 MICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENS 324 (677)
Q Consensus 245 ~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~ 324 (677)
+|++.+|.++++.++.+|+...+.++|.+..|++.+..+++.++.+...+|.+++++|||+|+.|+++.+||.+..++..
T Consensus 282 ~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~ 361 (716)
T KOG0058|consen 282 FMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVL 361 (716)
T ss_pred HHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 325 TTLFLCSMAMRWLAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERI 402 (677)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI 402 (677)
+...+.......+....++... ...++..|..++..|+++.|.+..|+.|...+..++..+...+.++.++..|.+|+
T Consensus 362 ~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rv 441 (716)
T KOG0058|consen 362 KLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERV 441 (716)
T ss_pred HHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 6554433333222222223322 24456677789999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 403 NNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 403 ~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
+|+++ .+|..+.. + ...++ ..+|.|+|+||+|+||.+ +.+||||+||+|+|||+||+|||||+||||++
T Consensus 442 Fel~d-r~P~i~~~--G------~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia 511 (716)
T KOG0058|consen 442 FELMD-RKPRIPLT--G------TLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA 511 (716)
T ss_pred HHHhc-cCCCCCCC--C------ccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHH
Confidence 99994 34432211 1 01111 357999999999999976 45799999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 482 ~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
+||.|||+|++|+|.+||+||+++
T Consensus 512 sLL~rfY~PtsG~IllDG~~i~~~-------------------------------------------------------- 535 (716)
T KOG0058|consen 512 SLLLRFYDPTSGRILLDGVPISDI-------------------------------------------------------- 535 (716)
T ss_pred HHHHHhcCCCCCeEEECCeehhhc--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHH
Q psy845 562 SVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638 (677)
Q Consensus 562 ~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI 638 (677)
+.+.||++||+|.|||.||++||+|||.|+. +++|||+++|+|+||+||||.++|+||||.+ +|.+|||||||||
T Consensus 536 --~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 536 --NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred --CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH
Confidence 9999999999999999999999999999875 7899999999999999999999999999999 8999999999999
Q ss_pred HHHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
||||||+|||++| ..+++| | |+||++||+|+|+|+|+++
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVV 681 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEE
Confidence 9999999999987 256788 3 8999999999999999985
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=671.12 Aligned_cols=432 Identities=23% Similarity=0.285 Sum_probs=353.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccc---hhHHhhhHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFALP---LLIITTLYHLISKVFR--SVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~~---~~~~t~~~~~i~~v~~--s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
++.-.++-+++..++|++++. ++++|||+| +.+++|+..|+++|-. +..+..+++++.+++.++++-++++|.+
T Consensus 732 ~~~ge~Lt~R~R~~~F~~ll~-qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~l 810 (1228)
T KOG0055|consen 732 GIAGEKLTKRLRSMMFRALLR-QEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRL 810 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555699999999 588999988 5777888888777765 5678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
+++++...|++.+......+......+.......+......|++++++||++|++|+++.+.|++..+...+...+....
T Consensus 811 alv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i 890 (1228)
T KOG0055|consen 811 ALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLI 890 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877766555555555444444444555677899999999999999999999999999998887766554443
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy845 334 MRWLAVRIDVL--AVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVP 411 (677)
Q Consensus 334 ~~~~~~~l~~l--~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~ 411 (677)
........+.+ ..-++.+.+|.+++.+|.+++..+...+.....-...+.+......++.++..|+.+++++++. +|
T Consensus 891 ~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr-~~ 969 (1228)
T KOG0055|consen 891 SGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDR-KP 969 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcC-CC
Confidence 32221111111 1125567778889999999998877666555555566777778888999999999999999954 44
Q ss_pred CCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 412 EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 412 e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+.+.+.++ .....+.+|+|+|+||+|+||.+ +.+||+|+|++|++||++|+||||||||||++.||.|||||
T Consensus 970 ~i~~~~~~-------~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 970 TIDPDSTS-------GGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred CCCCCCCC-------CCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 32222111 11112357999999999999965 45799999999999999999999999999999999999999
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 570 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~ 570 (677)
++|.|.|||+|++++ ++++||+
T Consensus 1043 ~~G~V~IDg~dik~l----------------------------------------------------------nl~~LR~ 1064 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDL----------------------------------------------------------NLKWLRK 1064 (1228)
T ss_pred CCCeEEECCcccccC----------------------------------------------------------CHHHHHH
Confidence 999999999999999 9999999
Q ss_pred hcccccccccccccchhhccccC-CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhcc
Q psy845 571 RLSVIPQDPVLFNGTIRYNLDPF-GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 571 ~I~~V~Qd~~LFsgTIrENI~~~-~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~ 647 (677)
+||+|+|||.||++||||||.++ .+++++|+.+|+|.|++|+||.+||+||||.+ +|.+||||||||||||||++||
T Consensus 1065 ~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1065 QIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred hcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 99999999999999999999998 45899999999999999999999999999999 7999999999999999999999
Q ss_pred chhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 648 TKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 648 p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
|+|| .+.||| | +||++|||.|+|++||+|+
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVV 1203 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEE
Confidence 9998 356787 3 8999999999999999985
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-73 Score=703.67 Aligned_cols=510 Identities=31% Similarity=0.503 Sum_probs=413.1
Q ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHH-HHHHHhhhhhHHHHHHHHHHHH
Q psy845 94 NMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL-MICFVFPWFALPLLIITTLYHL 172 (677)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 172 (677)
+..+|..||..+.+...++++.+.++..+....+.+|.+.|.+....+-.......| ++|.+++ ++..+...
T Consensus 951 ~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~-------i~~~~~~~ 1023 (1522)
T TIGR00957 951 ELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALG-------ILQGFAVF 1023 (1522)
T ss_pred cHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHH-------HHHHHHHH
Confidence 457899999887655555555566666677778888999998754311000101112 1221211 11122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy845 173 ISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC 247 (677)
Q Consensus 173 ~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~ 247 (677)
+...+-.+...+..+++...+|++++.. ++.||| +| + .|.++|.+.+++.+. ..+..++.+++.+++.+++++
T Consensus 1024 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~-p~~ff~~~~~G~ilnR~s~Di~~id~~l~-~~~~~~~~~~~~~i~~li~~~ 1101 (1522)
T TIGR00957 1024 GYSMAVSIGGIQASRVLHQDLLHNKLRS-PMSFFERTPSGNLVNRFSKELDTVDSMIP-PVIKMFMGSLFNVIGALIVIL 1101 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHhccCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 2222224445566778888999999986 669995 45 3 566777777777664 566778889999999988888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q psy845 248 FVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTL 327 (677)
Q Consensus 248 ~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~ 327 (677)
+.+|+++++++++.++++++++++.+..++.++.+...++++++++.|+++|+++||+|+.|+++.+++.+..+...+..
T Consensus 1102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1181 (1522)
T TIGR00957 1102 LATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAY 1181 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 88998888888888888888999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy845 328 FLCSMAMRWLAVRIDVLAVIAMAIITGLTVA-FHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406 (677)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv-~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil 406 (677)
+.......|+..+++++..++ +++.+.+.+ ..|.+++|.+++++.|+..+..++..+.+.+.+++.++.|++|+.++.
T Consensus 1182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~ 1260 (1522)
T TIGR00957 1182 YPSIVANRWLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYS 1260 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776777788888887776533 333344333 468899999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 407 KKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 407 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
+.++|.+...++ ..++..||.+|+|+|+||+|+|+++.++||+|+||+|+|||++|||||||||||||+++|+|
T Consensus 1261 -~~~~e~~~~~~~-----~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957 1261 -ETEKEAPWQIQE-----TAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred -cCCCCccccccC-----CCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444443211110 11234577789999999999998765679999999999999999999999999999999999
Q ss_pred CCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHH
Q psy845 487 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 566 (677)
Q Consensus 487 ~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 566 (677)
+|+|++|+|.+||+|++++ +++
T Consensus 1335 l~~~~~G~I~IdG~dI~~i----------------------------------------------------------~~~ 1356 (1522)
T TIGR00957 1335 INESAEGEIIIDGLNIAKI----------------------------------------------------------GLH 1356 (1522)
T ss_pred CccCCCCeEEECCEEcccc----------------------------------------------------------CHH
Confidence 9999999999999999999 899
Q ss_pred HHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHH
Q psy845 567 TLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARAL 644 (677)
Q Consensus 567 ~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARAL 644 (677)
++|++|++|||||+||+|||||||+++++++|||+++|++++|+++++.++|+||||.+ +|.+||||||||+|||||+
T Consensus 1357 ~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957 1357 DLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred HHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999 8999999999999999999
Q ss_pred hccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 645 LRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 645 Lr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
+|||+|+ ..+++| | ++|+++||||+|||+|+|+
T Consensus 1437 Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1437 LRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 9999987 246778 2 7899999999999999985
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-73 Score=656.31 Aligned_cols=448 Identities=24% Similarity=0.339 Sum_probs=382.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhccccccc--cchhHHhhh--HHHHHHHhhhhHHHHH
Q psy845 161 LPLLIITTLYHLISKVFRSVYLRSVFQNMWS----MLFAFLMICFVFPWFA--LPLLIITTL--YHLISKVFRSVYLRSV 232 (677)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~q~~~~----~~f~~~~~~~~~~~f~--~~~~~~t~~--~~~i~~v~~s~~l~~i 232 (677)
...++++.+...++...|+++....++++-. ..|+|++.+ ++.||+ .++..++|. .+.|++.+.+..+. .
T Consensus 197 ~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~L-pl~~f~~r~~Ge~~sR~~el~~Ir~flt~~~l~-~ 274 (709)
T COG2274 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRL-PLSYFEKRSVGEIISRVRELEQIREFLTGSILT-L 274 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC-cHHHccCCChhhHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445666777888888888888888887655 889999998 559995 566666554 44588988766665 5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHH
Q psy845 233 FQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDF 312 (677)
Q Consensus 233 l~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~ 312 (677)
+.++...++.+++|++++|+++++.+..++++.++...+.+..++..+..-+..+..++.+.|+++|++++|+.+.|.++
T Consensus 275 iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~ 354 (709)
T COG2274 275 IIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRF 354 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHH
Confidence 55555556666688999999999988888888888777777777766666666778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 313 VRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFV 390 (677)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~ 390 (677)
.++|++...+..+..++......+......++..+ +.++++|.+++.+|.+|.|.+.++.+....+.+|+..+++.+.
T Consensus 355 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~ 434 (709)
T COG2274 355 RSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWT 434 (709)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999998888777666655555444444433 4567788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEE
Q psy845 391 ETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIV 470 (677)
Q Consensus 391 ~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIV 470 (677)
+++....+.+|+.+++ +.++|.+.+.. ....++..|+|+|+||+|+|+++++++|+|+|++|+|||++|||
T Consensus 435 ~~q~~~~~~~rL~dil-~~~~E~~~~~~--------~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIv 505 (709)
T COG2274 435 DFQQAKVALERLGDIL-DTPPEQEGDKT--------LIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIV 505 (709)
T ss_pred HHHHHHHHHHHHHHHh-cCCcccccccc--------cccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEE
Confidence 9999999999999999 44555332210 11233467999999999999988778999999999999999999
Q ss_pred cCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcc
Q psy845 471 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS 550 (677)
Q Consensus 471 GpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~ 550 (677)
|+||||||||+|+|+|+|+|++|+|++||+|+.++
T Consensus 506 G~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i--------------------------------------------- 540 (709)
T COG2274 506 GRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI--------------------------------------------- 540 (709)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc---------------------------------------------
Confidence 99999999999999999999999999999999999
Q ss_pred ccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CC
Q psy845 551 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QG 627 (677)
Q Consensus 551 g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G 627 (677)
+++++|++||||+||++||+|||+|||+.+. ++++||+++||+.+|+||||+++|.||||.+ +|
T Consensus 541 -------------~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G 607 (709)
T COG2274 541 -------------DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG 607 (709)
T ss_pred -------------CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 8999999999999999999999999999875 6788999999999999999999999999999 89
Q ss_pred CCCChHHHHHHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 628 DQLSLGEKQLLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 628 ~~LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
.+||||||||++||||+++||+++ ...++| | ++++++||||+|||+|||+
T Consensus 608 ~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686 (709)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCcee
Confidence 999999999999999999999987 235677 3 7899999999999999986
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=690.75 Aligned_cols=509 Identities=29% Similarity=0.473 Sum_probs=391.3
Q ss_pred hhhHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy845 94 NMWSMLFAFLMIC-FVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHL 172 (677)
Q Consensus 94 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (677)
...+|..||...+ +.+....+.+.++..++...+.+|.+.|.+....+.... ..|...+ +.+.++..+..+
T Consensus 900 ~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~--~~~~~i~------~~l~~~~~i~~~ 971 (1622)
T PLN03130 900 SWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGP--LFYNLIY------ALLSFGQVLVTL 971 (1622)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCch--hHHHHHH------HHHHHHHHHHHH
Confidence 3567888887733 222222222333344455566788888887644321111 1122111 111111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy845 173 ISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC 247 (677)
Q Consensus 173 ~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~ 247 (677)
+....-.+...+..+++...+|+|++.. +++||| +| + .|.++|.+.+++.. +..+..++..++.+++.+++++
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~-p~~ffd~~~~G~IlnR~s~Di~~id~~l-~~~~~~~~~~~~~~i~~~i~i~ 1049 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRA-PMSFFHTNPLGRIINRFAKDLGDIDRNV-AVFVNMFLGQIFQLLSTFVLIG 1049 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHhccCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222234445666778888999999986 669995 45 3 55566666666655 3456778888888888888888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q psy845 248 FVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTL 327 (677)
Q Consensus 248 ~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~ 327 (677)
+++|+..++++|+.++++.+.+++.+..++.++.+..++++++++++|+++|+++||+|+.++++.+++++..+...+..
T Consensus 1050 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1129 (1622)
T PLN03130 1050 IVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFT 1129 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 88887666666666666667778888889999988899999999999999999999999999999998888888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 328 FLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHG-SV-----SPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER 401 (677)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G-~l-----s~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eR 401 (677)
+.......|+..+++++.. +++++.+...+..+ .. ..+.++.+++|+..+..++..+.+...+++.++.|++|
T Consensus 1130 ~~~~~~~~wl~~~l~~~~~-~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveR 1208 (1622)
T PLN03130 1130 LVNMSSNRWLAIRLETLGG-LMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVER 1208 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6656667787777776655 22333333334333 22 14667788888889999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 402 INNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 402 I~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
+.++. +.++|.+...++ ..++..||.+|+|+|+||+|+|+++.++||+|+||+|+|||+||||||||||||||+
T Consensus 1209 i~e~~-~~~~E~~~~~~~-----~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl 1282 (1622)
T PLN03130 1209 VGTYI-DLPSEAPLVIEN-----NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSML 1282 (1622)
T ss_pred HHHHh-CCCCcccccccC-----CCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 99998 444443211110 112335677789999999999987656799999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 482 ~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
++|+|+|+|++|+|.+||+|++++
T Consensus 1283 ~lL~rl~~p~~G~I~IDG~dI~~i-------------------------------------------------------- 1306 (1622)
T PLN03130 1283 NALFRIVELERGRILIDGCDISKF-------------------------------------------------------- 1306 (1622)
T ss_pred HHHhCcCCCCCceEEECCEecccC--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHH
Q psy845 562 SVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLC 639 (677)
Q Consensus 562 ~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIa 639 (677)
+++++|++|++|||||+||+|||||||+++++++|+|+++|+++++++++++++|+||||.+ +|.+||||||||+|
T Consensus 1307 --~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1307 --GLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384 (1622)
T ss_pred --CHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHH
Confidence 89999999999999999999999999999888999999999999999999999999999999 89999999999999
Q ss_pred HHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 640 LARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 640 IARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
||||++|||+|+ ..+++| | ++|+++||||+|||+|+|+
T Consensus 1385 LARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1385 LARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVV 1451 (1622)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 999999999987 246778 2 7899999999999999985
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-70 Score=617.22 Aligned_cols=440 Identities=26% Similarity=0.380 Sum_probs=364.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc----hhHHhhhHHHHHHHhhhhHHHHHHHHHHHHH
Q psy845 166 ITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP----LLIITTLYHLISKVFRSVYLRSVFQNMWSML 240 (677)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~----~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll 240 (677)
+..+.++......++....+.+++...+|.+++.+. ..||+ .+ ..++|+|.+.+.+.+... ...+...++.++
T Consensus 64 ~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~-~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~-~~~~~~~~~~~~ 141 (567)
T COG1132 64 LGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP-LSFFDKAKSGDLISRLTNDVEAVSNLVSTV-LVLVFTSILLLI 141 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHhCcCCcchHHHHHHhhHHHHHHHHHHh-HHHHHHHHHHHH
Confidence 444455555555555557777888889999999985 48995 44 377788888888877654 444555788888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHH
Q psy845 241 FAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQY 320 (677)
Q Consensus 241 ~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~ 320 (677)
+.+++++..+|.++++++...+++.+....+.++.++..+..++..+++++.+.|+++|++++|+|+.++...+++++..
T Consensus 142 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~ 221 (567)
T COG1132 142 GSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEAN 221 (567)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHH
Confidence 89989999999999888888788777777777666777777788889999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 321 DENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLA 398 (677)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s 398 (677)
++..+.............+....+..+ ..++..|.+.+.+|.+++|.+.+++.+...+..|+..+......++.+..|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 301 (567)
T COG1132 222 EELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAA 301 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665443333333332223333222 344556666788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChH
Q psy845 399 VERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKS 478 (677)
Q Consensus 399 ~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKS 478 (677)
.+|+.+++++ +++...+.. . .....++|+|+||+|+|+++ +++|+|+||+++|||++|||||||||||
T Consensus 302 ~~ri~~~l~~-~~~~~~~~~--------~--~~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKS 369 (567)
T COG1132 302 AERLFELLDE-EPEVEDPPD--------P--LKDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKS 369 (567)
T ss_pred HHHHHHHHcC-CccccCCCC--------C--CCCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHH
Confidence 9999999943 332111110 0 12245789999999999864 4699999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccccccccc
Q psy845 479 SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558 (677)
Q Consensus 479 TLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~ 558 (677)
|++++|+|+|+|++|+|++||+|++++
T Consensus 370 Tl~~LL~r~~~~~~G~I~idg~dI~~i----------------------------------------------------- 396 (567)
T COG1132 370 TLIKLLLRLYDPTSGEILIDGIDIRDI----------------------------------------------------- 396 (567)
T ss_pred HHHHHHhccCCCCCCeEEECCEehhhc-----------------------------------------------------
Confidence 999999999999999999999999999
Q ss_pred chhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHH
Q psy845 559 DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEK 635 (677)
Q Consensus 559 ~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQR 635 (677)
+.++||++|++|||||+||+|||+|||+++. +++|||+++|++.++++||++++|+||||.+ +|.+||||||
T Consensus 397 -----~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 397 -----SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred -----CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 8999999999999999999999999999986 4899999999999999999999999999999 7999999999
Q ss_pred HHHHHHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 636 QLLCLARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 636 QRIaIARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
||+|||||++||||++ ..++|| | ++|+++||||+|||+|+|+
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~ 542 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIV 542 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEE
Confidence 9999999999999987 135667 3 7899999999999999974
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=676.95 Aligned_cols=507 Identities=30% Similarity=0.506 Sum_probs=383.7
Q ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHH
Q psy845 94 NMWSMLFAFLMICFVFPWFALPLLII---TTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLY 170 (677)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (677)
+..+|..|+...+- .|+.+.++++ ..+....+..|++.|-+.-..+..+ -..|... + +.+.+...+.
T Consensus 897 ~~~vy~~y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~--~~~~l~~----y--~~l~~~~~~~ 966 (1495)
T PLN03232 897 SWNVLMRYNKAVGG--LWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYS--PGFYIVV----Y--ALLGFGQVAV 966 (1495)
T ss_pred cHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC--cchHHHH----H--HHHHHHHHHH
Confidence 45678888887542 2222222333 3344455567777776542211111 1122111 1 1111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy845 171 HLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLM 245 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~ 245 (677)
.++....-.+...+..+++...+|++++.. +++||| +| + .|.|+|.+.+++.+.. .+..++..++.+++.+++
T Consensus 967 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~-p~~ff~~~~~G~ilnr~s~Di~~id~~l~~-~~~~~~~~~~~~i~~~i~ 1044 (1495)
T PLN03232 967 TFTNSFWLISSSLHAAKRLHDAMLNSILRA-PMLFFHTNPTGRVINRFSKDIGDIDRNVAN-LMNMFMNQLWQLLSTFAL 1044 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CeeeeCcCCchHHHHHhHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 222222334556667788888999999996 669995 45 3 5666677777776543 666788888888888877
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy845 246 ICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENST 325 (677)
Q Consensus 246 l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~ 325 (677)
++..+++..++++++.++++....++.+..++.++.+..+++++.++++|+++|+++||+|+.++++.+++++..+...+
T Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~ 1124 (1495)
T PLN03232 1045 IGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIR 1124 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 77777766655666655556666777778888888889999999999999999999999999999999988888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 326 TLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAF-HGSVS-----PALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399 (677)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~-~G~ls-----~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~ 399 (677)
..........|+..+++.+.. +++.+.+...+. .|.+. .+.++.+++|+..+.++++.+.+.+.+++.++.|+
T Consensus 1125 ~~~~~~~~~~wl~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~ 1203 (1495)
T PLN03232 1125 FTLANTSSNRWLTIRLETLGG-VMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSV 1203 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555556677666655543 222333333333 34321 34566778888899999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHH
Q psy845 400 ERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS 479 (677)
Q Consensus 400 eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKST 479 (677)
||+.+++ +.++|.+...++ ..++..||.+|+|+|+||+|+|+++.++||+|+||+|+|||++||||||||||||
T Consensus 1204 eRi~e~~-~~~~e~~~~~~~-----~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKST 1277 (1495)
T PLN03232 1204 ERVGNYI-DLPSEATAIIEN-----NRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSS 1277 (1495)
T ss_pred HHHHHHh-cCCccccccccC-----CCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHH
Confidence 9999998 444443211110 0122346777899999999999766567999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 480 LLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 480 Li~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
|+++|+|+|+|++|+|.+||+|++++
T Consensus 1278 L~~lL~rl~~p~~G~I~IdG~di~~i------------------------------------------------------ 1303 (1495)
T PLN03232 1278 MLNALFRIVELEKGRIMIDDCDVAKF------------------------------------------------------ 1303 (1495)
T ss_pred HHHHHhCCCcCCCceEEECCEEhhhC------------------------------------------------------
Confidence 99999999999999999999999999
Q ss_pred hhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHH
Q psy845 560 IASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQL 637 (677)
Q Consensus 560 ~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQR 637 (677)
+++++|++|++|||||+||+|||||||+++++++|+|+++|+++++++++++++|+|+||.+ +|.+||||||||
T Consensus 1304 ----~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1379 (1495)
T PLN03232 1304 ----GLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQL 1379 (1495)
T ss_pred ----CHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHH
Confidence 88999999999999999999999999999888999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 638 LCLARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 638 IaIARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
+|||||++|+|+|+ ..+++| | ++|+++||||+|||+|+|+
T Consensus 1380 laLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1380 LSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448 (1495)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999999999987 236778 2 7899999999999999985
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-70 Score=673.25 Aligned_cols=514 Identities=28% Similarity=0.443 Sum_probs=396.9
Q ss_pred hhhHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy845 94 NMWSMLFAFLMIC-FVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHL 172 (677)
Q Consensus 94 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (677)
+.++|..||.... +.+.++.+-++++..+....+..|.+.|.+.-++.... ...++|.++..+. ++...++.
T Consensus 947 ~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~---~~l~~y~~~~~~~----~~~~~l~~ 1019 (1560)
T PTZ00243 947 PWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAA---TYLYVYLGIVLLG----TFSVPLRF 1019 (1560)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcc---cHHHHHHHHHHHH----HHHHHHHH
Confidence 4567888887643 33333333333445566777889999998754322111 1111222211111 11112221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy845 173 ISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC 247 (677)
Q Consensus 173 ~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~ 247 (677)
.......+...+++..++|++++.. ++.||| .| + .|+|+|.+.+++.+.. .+..++..++.+++.+++++
T Consensus 1020 ---~~~~~~~~~~~~~l~~~l~~~ll~~-p~~ffd~~~~G~ilnR~s~Di~~id~~l~~-~l~~~~~~~~~~i~~li~~~ 1094 (1560)
T PTZ00243 1020 ---FLSYEAMRRGSRNMHRDLLRSVSRG-TMSFFDTTPLGRILNRFSRDIDILDNTLPM-SYLYLLQCLFSICSSILVTS 1094 (1560)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHcC-ChhhccCCCccHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 2222333444567888999999986 569995 45 3 6667777777776643 45668888899999888888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q psy845 248 FVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTL 327 (677)
Q Consensus 248 ~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~ 327 (677)
+.+|+++++++++.+++..+.+++.+..++.++.....++++.++++|+++|+++||+|++|+.+.+++.+..+...+..
T Consensus 1095 ~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1095 ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777677778888999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 328 FLCSMAMRWLAVRIDVLAVIAM--AIITGLTV--AFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERIN 403 (677)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~~l~~--~l~~g~~l--v~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~ 403 (677)
+.......|...+.+++..+.. +.+++++. ...+.+++|.++++++++..+..++..+.+.+.+++.++.|++|+.
T Consensus 1175 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1254 (1560)
T PTZ00243 1175 YLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLL 1254 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766677888877776655322 22223332 2345678999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCCCCCC-------c----cc-------cccccc---cCCCCCccEEEEeeeEEeCCCCCccccceeeEEe
Q psy845 404 NCSKKLVPEGRGPITS-------E----FG-------QVKVKL---ADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRIN 462 (677)
Q Consensus 404 eil~~~~~e~~~~~~~-------~----~~-------~~~~~~---~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~ 462 (677)
+++++.++|+..+.+. . .+ +....+ ..++..|+|+|+||+|+|+++.++||+|+||+|+
T Consensus 1255 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~ 1334 (1560)
T PTZ00243 1255 YYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIA 1334 (1560)
T ss_pred HHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEEC
Confidence 9985433321100000 0 00 000001 1123457899999999998766679999999999
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHH
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~ 542 (677)
|||+||||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i------------------------------------- 1377 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY------------------------------------- 1377 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC-------------------------------------
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccC
Q psy845 543 FRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLD 622 (677)
Q Consensus 543 ~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~Gld 622 (677)
+.+++|++|++|||||+||+|||||||+++++++|+|+++|++++|+++++.++|+|||
T Consensus 1378 ---------------------~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gld 1436 (1560)
T PTZ00243 1378 ---------------------GLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGID 1436 (1560)
T ss_pred ---------------------CHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCccccc
Confidence 88999999999999999999999999999888999999999999999999999999999
Q ss_pred CCC--CCCCCChHHHHHHHHHHHHhcc-chhh-----------------------cccccc---e---ecccccccEEEE
Q psy845 623 SDV--QGDQLSLGEKQLLCLARALLRK-TKKK-----------------------KKSGVN---I---TRPVTSCDKVLV 670 (677)
Q Consensus 623 T~v--~G~~LSGGQRQRIaIARALLr~-p~IL-----------------------~~~~~T---I---LsTI~~aDrIlV 670 (677)
|.+ +|.||||||||||||||||+|+ |+++ .++++| | ++|+++||||+|
T Consensus 1437 t~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlV 1516 (1560)
T PTZ00243 1437 SRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIV 1516 (1560)
T ss_pred ccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEE
Confidence 999 8999999999999999999996 7876 246778 2 789999999999
Q ss_pred EeCCeeC
Q psy845 671 MDNGQAL 677 (677)
Q Consensus 671 Ld~GrIV 677 (677)
||+|+|+
T Consensus 1517 Ld~G~Vv 1523 (1560)
T PTZ00243 1517 MDHGAVA 1523 (1560)
T ss_pred EECCEEE
Confidence 9999985
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-68 Score=604.33 Aligned_cols=437 Identities=18% Similarity=0.205 Sum_probs=342.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
+.+.+...+.....+++-+++..++|+|+.... ..||+ .++ .++|.|.+.+++.+. ..+..++.+++.+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~-~~~~~~~~~g~l~s~~~~dv~~i~~~~~-~~~~~~~~~~~~~~~~~ 155 (588)
T PRK11174 78 LLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLG-PAWIQGKPAGSWATLVLEQVEDMHDFYA-RYLPQMALAVLVPLLIL 155 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhccCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 334334344444455555666679999999875 48984 344 566677777777553 45667888888888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHH
Q psy845 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDEN 323 (677)
Q Consensus 244 v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~ 323 (677)
+++++++|++++++++..++..++...+.++.++..+..++..+++++.+.|.++|+++||+|+.|+++.+++++..++.
T Consensus 156 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 235 (588)
T PRK11174 156 IAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDF 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHH
Confidence 89999999999888888888777777888877777777777778899999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMAMRWLAVRIDVLAVIAM--AIITGLTVAFHGSVSPALA---------GLALTYASHVTGLLQFTVRVFVET 392 (677)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~~l~~--~l~~g~~lv~~G~ls~g~l---------~~~l~~~~~l~~~l~~l~~~~~~l 392 (677)
.+..................+..+.. +++++++. ..|.++.|.+ .+++.+...+..|+..+...+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~ 314 (588)
T PRK11174 236 RQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFS-YLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAK 314 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 76654433332223333333322211 11222222 2366666543 222355667789999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcC
Q psy845 393 ELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGR 472 (677)
Q Consensus 393 ~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGp 472 (677)
+++..+.+|+.++++. +++.... . ....+.+..++|+|+||+|.|+++ +++|+|+||+++|||++|||||
T Consensus 315 ~~~~~~~~ri~~~l~~-~~~~~~~-~-------~~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~ 384 (588)
T PRK11174 315 AQAVGAAESLVTFLET-PLAHPQQ-G-------EKELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGP 384 (588)
T ss_pred HHHHHHHHHHHHHHcC-CCcccCC-C-------ccccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECC
Confidence 9999999999999843 3221111 0 000011123579999999988655 4699999999999999999999
Q ss_pred CCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccc
Q psy845 473 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 473 SGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
||||||||+++|+|+| |++|+|.+||+|++++
T Consensus 385 SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~----------------------------------------------- 416 (588)
T PRK11174 385 SGAGKTSLLNALLGFL-PYQGSLKINGIELREL----------------------------------------------- 416 (588)
T ss_pred CCCCHHHHHHHHhcCC-CCCcEEEECCEecccC-----------------------------------------------
Confidence 9999999999999999 9999999999999999
Q ss_pred ccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCC
Q psy845 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQ 629 (677)
Q Consensus 553 i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~ 629 (677)
+.+++|++|+||||||+||+|||||||++++ +++|||+++|++.+++++|++++|+||||.+ +|.+
T Consensus 417 -----------~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 417 -----------DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred -----------CHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 8899999999999999999999999999874 6999999999999999999999999999999 8999
Q ss_pred CChHHHHHHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 630 LSLGEKQLLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 630 LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
||||||||||||||+++||+++ ..+++| | ++++++||+|+||++|+++
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEe
Confidence 9999999999999999999987 135677 2 6788999999999999985
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-68 Score=611.77 Aligned_cols=437 Identities=20% Similarity=0.240 Sum_probs=352.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRS----VFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSM 239 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~----~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~l 239 (677)
+.+.+....+++.... +..++...+|+|++.. +..||+. ++ .+++ +.+.+++.+.+..+ ..+.+....
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~-~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~-~~~~~~~~~ 263 (686)
T TIGR03797 187 VGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRL-PVSFFRQYSTGDLASRAM-GISQIRRILSGSTL-TTLLSGIFA 263 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3344444555555544 4445555899999987 4589943 34 4444 45666776655444 445555556
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHH
Q psy845 240 LFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQ 319 (677)
Q Consensus 240 l~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~ 319 (677)
++.++++++++|+++++++++.+++..+...+.+..++..+...+..++.++.+.|+++|+++||+++.|+++.++|++.
T Consensus 264 ~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 343 (686)
T TIGR03797 264 LLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKL 343 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHH
Confidence 67777888999999988887777777777777777666666666667788999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 320 YDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFL 397 (677)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~ 397 (677)
.++..+...+......+.......+..+ +.++++|.+++.+|.+|.|.+.++.++...+..|+..+...+.+++.+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~ 423 (686)
T TIGR03797 344 FSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIP 423 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776665554444444333333222 33456677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCCh
Q psy845 398 AVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGK 477 (677)
Q Consensus 398 s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGK 477 (677)
+.+|+.++++ .++|...+ . ....+..++|+++||+|+|+++++++|+|+||+|+|||++||||||||||
T Consensus 424 ~~~ri~~~l~-~~~e~~~~-~---------~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGK 492 (686)
T TIGR03797 424 LWERAKPILE-ALPEVDEA-K---------TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGK 492 (686)
T ss_pred HHHHHHHHhc-CCcccccC-c---------CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCH
Confidence 9999999984 33332111 0 00112346899999999997655679999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 478 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 478 STLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
|||+|+|+|+|+|++|+|++||+|++++
T Consensus 493 STLlklL~gl~~p~~G~I~idg~~i~~~---------------------------------------------------- 520 (686)
T TIGR03797 493 STLLRLLLGFETPESGSVFYDGQDLAGL---------------------------------------------------- 520 (686)
T ss_pred HHHHHHHhCCCCCCCCEEEECCEEcCcC----------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred cchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHH
Q psy845 558 FDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEK 635 (677)
Q Consensus 558 ~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQR 635 (677)
+.+++|+++|||||||++|+|||+|||+++++++|||+++|++.++++++++++|+|+||.+ +|.+||||||
T Consensus 521 ------~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 521 ------DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred ------CHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 88999999999999999999999999998766899999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHhccchhhc---------------------ccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 636 QLLCLARALLRKTKKKK---------------------KSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 636 QRIaIARALLr~p~IL~---------------------~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
|||+||||+++||+++. ..++| | ++++++||||+|||+|+++
T Consensus 595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv 663 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVV 663 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEE
Confidence 99999999999999871 12467 2 6688999999999999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=602.48 Aligned_cols=439 Identities=21% Similarity=0.297 Sum_probs=360.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-c-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy845 168 TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL-P-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFA 242 (677)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~-~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~ 242 (677)
.+...+......+..+++..++...+|+++... +..||+. + + .++|+|.+.+++.+. ..+..++.+++.++++
T Consensus 215 ~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~-~~~~f~~~~~G~i~srl~~Di~~i~~~~~-~~~~~~l~~~~~~i~~ 292 (711)
T TIGR00958 215 SVSAGLRGGSFNYTMARINLRIREDLFRSLLRQ-DLGFFDENKTGELTSRLSSDTQTMSRSLS-LNVNVLLRNLVMLLGL 292 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHcCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333444444445556666677777999999886 5689953 3 3 666777777777654 4566788888899999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHH
Q psy845 243 FLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE 322 (677)
Q Consensus 243 ~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~ 322 (677)
+++++.++|++++++++..++..++.+.+.++.++..+..++..++.++.+.|.++|+++||+|+.|+++.++|++..++
T Consensus 293 ~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~ 372 (711)
T TIGR00958 293 LGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEE 372 (711)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888887777777778889999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMR---WLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399 (677)
Q Consensus 323 ~~~~~~~~~~~~~---~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~ 399 (677)
..+...+...... +.......+.. +.++.+|.+++.+|.+++|.+.+++.|...+.+|+..+.....+++++..+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~ 451 (711)
T TIGR00958 373 TLQLNKRKALAYAGYLWTTSVLGMLIQ-VLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGAS 451 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665544332222 22222222222 3345567778889999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChH
Q psy845 400 ERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKS 478 (677)
Q Consensus 400 eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKS 478 (677)
+|+.++++. +++.+.+.+ ....+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||
T Consensus 452 ~ri~~~l~~-~~~~~~~~~---------~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKS 521 (711)
T TIGR00958 452 EKVFEYLDR-KPNIPLTGT---------LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKS 521 (711)
T ss_pred HHHHHHhCC-CCCCCCCCC---------CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHH
Confidence 999999943 332211100 0111245789999999999864 35799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccccccccc
Q psy845 479 SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558 (677)
Q Consensus 479 TLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~ 558 (677)
||+++|+|+|+|++|+|.+||+|++++
T Consensus 522 TLl~lL~gl~~p~~G~I~idg~~i~~~----------------------------------------------------- 548 (711)
T TIGR00958 522 TVAALLQNLYQPTGGQVLLDGVPLVQY----------------------------------------------------- 548 (711)
T ss_pred HHHHHHHhccCCCCCEEEECCEEHHhc-----------------------------------------------------
Confidence 999999999999999999999999998
Q ss_pred chhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHH
Q psy845 559 DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEK 635 (677)
Q Consensus 559 ~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQR 635 (677)
+.+++|++|+||||||++|+|||||||+++. +++|||+++|++.++++++++++|+|+||.+ +|.+||||||
T Consensus 549 -----~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 549 -----DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred -----CHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 8899999999999999999999999999874 6889999999999999999999999999999 7999999999
Q ss_pred HHHHHHHHHhccchhh---------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 636 QLLCLARALLRKTKKK---------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 636 QRIaIARALLr~p~IL---------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
||+|||||++|||+++ ..+++| | ++++++||+|+|||+|+|+
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 9999999999999987 134677 2 5678899999999999985
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-68 Score=653.71 Aligned_cols=436 Identities=27% Similarity=0.450 Sum_probs=362.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
.+...+..+++...+|.+++.. ++.||| +| + .|+++|.+.+++.+. ..+..++.+++.+++.++++++++|++
T Consensus 950 ~~~~~~~~~~l~~~l~~~ll~~-p~~ff~~~~~G~ilnRfs~Di~~id~~l~-~~~~~~~~~~~~~i~~l~~i~~~~p~l 1027 (1490)
T TIGR01271 950 VHTLLTVSKRLHEQMLHSVLQA-PMAVLNTMKAGRILNRFTKDMAIIDDMLP-LTLFDFIQLTLIVLGAIFVVSVLQPYI 1027 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CHHHhCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788888999999986 569995 46 3 566667777777554 455678888899999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
+++++++.++++.+.+++.+..++.++.+...++++.+++.|+++|+.+||+|+.++++.+++.+..+...+..+.....
T Consensus 1028 ~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1490)
T TIGR01271 1028 FIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLST 1107 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777788888998899999999999999999999999999999999999999999999998876666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy845 334 MRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEG 413 (677)
Q Consensus 334 ~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~ 413 (677)
..|+..+++++..+..+ ..++..+..+.++.|.++.+++|+..+.+++..+.+.+.+++..+.|++|+.++. +.++|.
T Consensus 1108 ~~wl~~~~~~i~~~~~~-~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~-~~~~e~ 1185 (1490)
T TIGR01271 1108 LRWFQMRIDIIFVFFFI-AVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFI-DLPQEE 1185 (1490)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcc
Confidence 77888777765542222 1222222233466778888899999999999999999999999999999999998 444442
Q ss_pred CCCCCCccc---------cccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHH
Q psy845 414 RGPITSEFG---------QVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484 (677)
Q Consensus 414 ~~~~~~~~~---------~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL 484 (677)
..+.+.... +....+..||..|.|+|+||+|+|+++.++||+|+||+|+|||+||||||||||||||+++|
T Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1186 PRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred ccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 211110000 00012235777789999999999987667899999999999999999999999999999999
Q ss_pred hcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh
Q psy845 485 FRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564 (677)
Q Consensus 485 ~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 564 (677)
+|+|+ ++|+|.|||+|++++ +
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i----------------------------------------------------------~ 1286 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSV----------------------------------------------------------T 1286 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccC----------------------------------------------------------C
Confidence 99997 899999999999999 8
Q ss_pred HHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHH
Q psy845 565 LETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 565 ~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIAR 642 (677)
.+++|+++++|||||+||+|||||||+++++++|+|+++|++++++++++.++|+|+||.+ +|.+||||||||+||||
T Consensus 1287 ~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred HHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999888999999999999999999999999999999 89999999999999999
Q ss_pred HHhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 643 ALLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 643 ALLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
|++|+|+|+ ..+++|+ ++|+++||||+|||+|+|+
T Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1367 SILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVK 1430 (1490)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 999999987 2466782 6789999999999999985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=610.91 Aligned_cols=438 Identities=21% Similarity=0.280 Sum_probs=355.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy845 168 TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFA 242 (677)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~ 242 (677)
.+.+.+.+.+..+..+++..++...+|+|++.+. +.||+. ++ .+++ +.+.+.+.+.+..+ ..+.++..+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~-~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~-~~~~~~~~~~~~ 286 (708)
T TIGR01193 210 QILSYIQIFLLNVLGQRLSIDIILSYIKHLFELP-MSFFSTRRTGEIVSRFT-DASSIIDALASTIL-SLFLDMWILVIV 286 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHhCCCchhHHHHHhh-hHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444444444455555666667778899999974 599953 34 4554 55666666655443 455666666777
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHH
Q psy845 243 FLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE 322 (677)
Q Consensus 243 ~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~ 322 (677)
++++++++|++++++++.++++.++...+.+..++..+...+..++.++.+.|+++|+++||+++.|+++.+++++..++
T Consensus 287 ~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 366 (708)
T TIGR01193 287 GLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGD 366 (708)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHH
Confidence 77788999999988888888888888888888888777777778889999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMRWLAV---RIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399 (677)
Q Consensus 323 ~~~~~~~~~~~~~~~~~---~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~ 399 (677)
..+...+.......... .+..+.. +.++++|.+++.+|.+|+|.+.++.++...+.+|+..+...+.+++.+..+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~ 445 (708)
T TIGR01193 367 YLNKSFKYQKADQGQQAIKAVTKLILN-VVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVAN 445 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655544333222222 2222222 3455677788899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHH
Q psy845 400 ERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS 479 (677)
Q Consensus 400 eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKST 479 (677)
+|+.++++ .++|.+.+.+ ....++..++|+++||+|+|+++ +++|+|+||+|+|||++||||||||||||
T Consensus 446 ~ri~~~l~-~~~e~~~~~~--------~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKST 515 (708)
T TIGR01193 446 NRLNEVYL-VDSEFINKKK--------RTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKST 515 (708)
T ss_pred HHHHHHHc-CCCccccccc--------ccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHH
Confidence 99999984 3333221110 00111235789999999999754 56999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 480 LLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 480 Li~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
|+++|+|+|+|++|+|++||+|++++
T Consensus 516 LlklL~gl~~p~~G~I~idg~~i~~~------------------------------------------------------ 541 (708)
T TIGR01193 516 LAKLLVGFFQARSGEILLNGFSLKDI------------------------------------------------------ 541 (708)
T ss_pred HHHHHhccCCCCCcEEEECCEEHHHc------------------------------------------------------
Confidence 99999999999999999999999998
Q ss_pred hhhhhHHHHhhhcccccccccccccchhhccccC--CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHH
Q psy845 560 IASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF--GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEK 635 (677)
Q Consensus 560 ~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~--~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQR 635 (677)
+.+++|++|+||||||+||+|||+|||+++ .+++|||+++|++.++++++++++|+||||.+ +|.+||||||
T Consensus 542 ----~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 542 ----DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred ----CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 899999999999999999999999999987 36899999999999999999999999999999 7999999999
Q ss_pred HHHHHHHHHhccchhh----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 636 QLLCLARALLRKTKKK----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 636 QRIaIARALLr~p~IL----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
|||+||||+++||+++ ..+++| | +++++.||||+||++|+++
T Consensus 618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 9999999999999977 134677 2 5688899999999999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-67 Score=608.82 Aligned_cols=445 Identities=17% Similarity=0.220 Sum_probs=357.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
+.+.+.........+++..++...+|.|++.. +..||+ .++ .+++.+ +.+++.+.+ .+..++.++..+++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l-~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~-~~~~~~~~~~~~~~~~ 285 (710)
T TIGR03796 209 VLTWLQLYYLRRLQIKLAVGMSARFLWHILRL-PVRFFAQRHAGDIASRVQLN-DQVAEFLSG-QLATTALDAVMLVFYA 285 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHcCCcccHHHHHhhhH-HHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34444444444455556666677999999997 458994 344 455554 456665543 4455777888888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHH
Q psy845 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDEN 323 (677)
Q Consensus 244 v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~ 323 (677)
+++++++|+++++.++.+++..++...+.+..++..+...+..++.++.+.|+++|+++||+++.|+.+.++|++..++.
T Consensus 286 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~ 365 (710)
T TIGR03796 286 LLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKL 365 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHH
Confidence 88999999999988888888888888888777776666667778899999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER 401 (677)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eR 401 (677)
.+...+......+.......+..+ +.++++|.+++.+|.+|+|.+.++.++...+.+|+..+...+.+++.+..+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~r 445 (710)
T TIGR03796 366 LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNR 445 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554444433333333333222 334566777889999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 402 INNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 402 I~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
+.++++ .++|.......+.+ .......+..+.|+++||+|+|+++++++|+|+||+|+|||++|||||||||||||+
T Consensus 446 i~~il~-~~~e~~~~~~~~~~--~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl 522 (710)
T TIGR03796 446 LDDVLR-NPVDPLLEEEEAPA--AGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA 522 (710)
T ss_pred HHHHHc-CCCccccccccccc--cccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 999984 33332211100000 000000123578999999999987656799999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 482 ~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
++|+|+|+|++|+|.+||+|++++
T Consensus 523 klL~gl~~p~~G~I~idg~~i~~~-------------------------------------------------------- 546 (710)
T TIGR03796 523 KLVAGLYQPWSGEILFDGIPREEI-------------------------------------------------------- 546 (710)
T ss_pred HHHhcCCCCCCcEEEECCEeHHHC--------------------------------------------------------
Confidence 999999999999999999999998
Q ss_pred hhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHH
Q psy845 562 SVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638 (677)
Q Consensus 562 ~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI 638 (677)
+.+++|++|+||||||++|+|||||||++++ +++|+++++|++.+++++++.++|+|+||.+ +|.+|||||||||
T Consensus 547 --~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 547 --PREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred --CHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 8899999999999999999999999999865 6899999999999999999999999999999 8999999999999
Q ss_pred HHHHHHhccchhh---------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK---------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL---------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
+||||++++|+++ ...++| | ++++++||||+|||+|+++
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 9999999999977 124677 2 6688999999999999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-67 Score=606.11 Aligned_cols=438 Identities=22% Similarity=0.271 Sum_probs=353.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cchhHHh--hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy845 171 HLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LPLLIIT--TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC 247 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~~~~~t--~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~ 247 (677)
+.+..-......+++.+++...+|+|++.+. ..|.. .++..++ ++.+.+++.+.+.. ...+.++..+++.+++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~-~~~~~~~~G~~~~r~~d~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~ 281 (694)
T TIGR03375 204 KTLRSYFLDVAGKKADLILSAKLFERVLGLR-MEARPASVGSFANQLREFESVRDFFTSAT-LTALIDLPFALLFLLVIA 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCChhHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHH
Confidence 3333333344445555566669999999985 47753 3443333 34555666554433 345566666667777888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q psy845 248 FVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTL 327 (677)
Q Consensus 248 ~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~ 327 (677)
+++|+++++.+..++++..+...+.++.++..+...+..++..+.+.|+++|+++||+++.|+.+.+++++..++..+..
T Consensus 282 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR03375 282 IIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSG 361 (694)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888877777777777889999999999999999999999999999999988877666
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy845 328 FLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNC 405 (677)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~ei 405 (677)
.+..............+..+ +.++++|.+++.+|.+|+|.+.++.++...+.+|+..+...+.+++.+..+.+|+.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~i 441 (694)
T TIGR03375 362 LKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDEL 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443333333333221 3345667778899999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 406 SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 406 l~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
++ .++|.+.+.. .....+..+.|+|+||+|+|+++++++|+|+||+|+|||++|||||||||||||+++|+
T Consensus 442 l~-~~~e~~~~~~--------~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~ 512 (694)
T TIGR03375 442 MQ-LPVERPEGTR--------FLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLL 512 (694)
T ss_pred Hc-CCCCCCCCCC--------CCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 94 3333211100 00111235689999999999866567999999999999999999999999999999999
Q ss_pred cCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH
Q psy845 486 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 486 r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 565 (677)
|+|+|++|+|.+||+|++++ +.
T Consensus 513 gl~~p~~G~I~idg~~l~~~----------------------------------------------------------~~ 534 (694)
T TIGR03375 513 GLYQPTEGSVLLDGVDIRQI----------------------------------------------------------DP 534 (694)
T ss_pred cCCCCCCceEEECCEEhhhC----------------------------------------------------------CH
Confidence 99999999999999999998 88
Q ss_pred HHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHH
Q psy845 566 ETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 566 ~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIAR 642 (677)
+++|++++|||||+++|+|||+|||++++ ++++||+++|++.++++++++++|+|+||.+ +|.+||||||||++|||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999875 5899999999999999999999999999999 89999999999999999
Q ss_pred HHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 643 ALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 643 ALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
|+++||+++ ..+++| | +++++.||||+||++|+++
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~ 678 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIV 678 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999977 124677 2 6788999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-66 Score=585.88 Aligned_cols=437 Identities=20% Similarity=0.261 Sum_probs=355.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy845 170 YHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL 244 (677)
Q Consensus 170 ~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v 244 (677)
.+.+.........+++...+..++|.|++... ..+|+ .++ .++++|.+.+.+.+. ..+..++.+++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~d~~~i~~~~~-~~~~~~~~~~~~~~~~~~ 158 (582)
T PRK11176 81 TSFISSYCISWVSGKVVMTMRRRLFGHMMGMP-VSFFDKQSTGTLLSRITYDSEQVASSSS-GALITVVREGASIIGLFI 158 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHhCCCCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33333333344555556667779999999874 47884 344 555666666666443 345668888999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy845 245 MICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENS 324 (677)
Q Consensus 245 ~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~ 324 (677)
++++++|++++++++..++..++...+.++.++..+......++..+.+.|.++|++++|+++.|+.+.++|++..++..
T Consensus 159 ~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~ 238 (582)
T PRK11176 159 MMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR 238 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 99999999988887777777777777777777777666777788999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 325 TTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERI 402 (677)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI 402 (677)
+...+......+.......+..+ ..++++|.+.+.+|.+++|.++++.++...+..|++.+...+..++.+..+.+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri 318 (582)
T PRK11176 239 QQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL 318 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655554444444434443332 2334455667888999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHH
Q psy845 403 NNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482 (677)
Q Consensus 403 ~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~ 482 (677)
.++++ .+++.+... . ...+..++|+++||+|+|+++++++|+|+|++|++||++|||||||||||||++
T Consensus 319 ~~~~~-~~~~~~~~~---------~-~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 319 FAILD-LEQEKDEGK---------R-VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHhc-CCCcCCCCC---------c-CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHH
Confidence 99984 332211110 0 011234579999999999876567999999999999999999999999999999
Q ss_pred HHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 483 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 483 LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
+|+|+|+|++|+|++||+|++++
T Consensus 388 ll~gl~~p~~G~I~i~g~~i~~~--------------------------------------------------------- 410 (582)
T PRK11176 388 LLTRFYDIDEGEILLDGHDLRDY--------------------------------------------------------- 410 (582)
T ss_pred HHHhccCCCCceEEECCEEhhhc---------------------------------------------------------
Confidence 99999999999999999999998
Q ss_pred hhHHHHhhhcccccccccccccchhhccccCC--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHH
Q psy845 563 VELETLRSRLSVIPQDPVLFNGTIRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638 (677)
Q Consensus 563 ~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI 638 (677)
+.+++|++++|||||+++|+|||+|||+++. +++|+|++++++.+|++++++++|+|+||.+ +|.+|||||||||
T Consensus 411 -~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi 489 (582)
T PRK11176 411 -TLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489 (582)
T ss_pred -CHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHH
Confidence 8889999999999999999999999999763 4799999999999999999999999999999 7999999999999
Q ss_pred HHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
+||||++|+|+++ ..+++| | +++++.||||++|++|+++
T Consensus 490 ~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIV 557 (582)
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 9999999999977 124677 2 5678899999999999984
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=583.67 Aligned_cols=425 Identities=20% Similarity=0.272 Sum_probs=339.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
.....++.+++...+|.+++.. +..||+. ++ .++++|.+.+++.+.. .+..++.++..+++.++++++++|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~-~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQ-PLSAFDTQPVGQLISRVTNDTEVIRDLYVT-VVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CHHHhCCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444466777999999987 4488853 33 6667777777776654 44557788888888888888999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
+++.+...++..++...+.+..++..+......++.++++.|.++|+++||+|+.|+++.+++.+..++..+........
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776666666666666666666666655566678899999999999999999999999999998877766554433322
Q ss_pred HHHH-HHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy845 334 MRWL-AVRIDVLAVIA--MAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLV 410 (677)
Q Consensus 334 ~~~~-~~~l~~l~~l~--~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~ 410 (677)
.... ......+..+. .+.+.++ .+..|.+++|.+.++..+...+..|+..+...+.+++++..+.+|+.++++. +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~-~ 325 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFG-FSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG-P 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 2111 11122222211 1111222 2578999999999999999999999999999999999999999999999843 2
Q ss_pred CCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 411 PEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 411 ~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+++... . ...+..++|+++||+|+|+++ +++|+|+||++++||++||||+||||||||+++|+|+|+|
T Consensus 326 ~~~~~~-~----------~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 326 RQQYGN-D----------DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred CccCCC-C----------ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 221111 0 011234679999999999864 4699999999999999999999999999999999999999
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 570 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~ 570 (677)
++|+|.+||+|++++ +.+++|+
T Consensus 394 ~~G~I~idg~~i~~~----------------------------------------------------------~~~~l~~ 415 (592)
T PRK10790 394 TEGEIRLDGRPLSSL----------------------------------------------------------SHSVLRQ 415 (592)
T ss_pred CCceEEECCEEhhhC----------------------------------------------------------CHHHHHh
Confidence 999999999999998 8999999
Q ss_pred hcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccc
Q psy845 571 RLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKT 648 (677)
Q Consensus 571 ~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p 648 (677)
+|+||||||.+|+|||+|||+++++++|+|+++|++++|++++++++|+|+||.+ +|.+|||||||||+||||+++||
T Consensus 416 ~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 416 GVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred heEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999888899999999999999999999999999999 89999999999999999999999
Q ss_pred hhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 649 KKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 649 ~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
+++ ..+++| | +++++.||+|++||+|+++
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~ 553 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAV 553 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 977 124567 2 5678889999999999984
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=573.93 Aligned_cols=418 Identities=20% Similarity=0.180 Sum_probs=330.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy845 171 HLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLM 245 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~ 245 (677)
+.+.+.......+++.+++..++|+|+..... .||+ .++ .++|.|.+.+++.+. ..+..++.+++.+++.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~-~~~~~~~~g~~~~~l~~d~~~i~~~~~-~~~~~~~~~~~~~~~~~~~ 147 (529)
T TIGR02868 70 RYLERLVGHDAALRSLGRLRVRVYDRLARLAL-AGRRRFQTGDLLGRLGADVDALQDLYV-RVIVPLVVALVVGSAAVAA 147 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cccccCChhhHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33333344445556667777899999998754 8994 233 666777777777554 3456678888888888888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy845 246 ICFVFPWFALPLLIITTLYHLIS-KVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENS 324 (677)
Q Consensus 246 l~~~~~~lal~~l~i~~l~~~i~-~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~ 324 (677)
+++++|++++++++..+++.++. ....+..++..+..++..+++.+.+.|.++|+++||+|+.|+.+.+++++..++..
T Consensus 148 l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~ 227 (529)
T TIGR02868 148 IALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELL 227 (529)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999887776666655443 44444445555555566688999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 325 TTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERI 402 (677)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI 402 (677)
+...+..............+..+ +.++++|.+.+.+|.+++|.+.+++.+...+..|+..+.+....++.+..+.+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 307 (529)
T TIGR02868 228 AAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERI 307 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444333333333333322 2334556677889999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHH
Q psy845 403 NNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482 (677)
Q Consensus 403 ~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~ 482 (677)
.++++. +++.+.+... ......+..++|+|+||+|+|++++ ++|+|+||+|+|||++|||||||||||||++
T Consensus 308 ~~~l~~-~~~~~~~~~~------~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 308 EEVTGA-KGPRPEGVVP------AAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHhcC-CCCcCCCCCC------CCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999843 3322111100 0001112346799999999998653 5999999999999999999999999999999
Q ss_pred HHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 483 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 483 LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
+|+|+|+|++|+|.+||+|++++
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~--------------------------------------------------------- 402 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL--------------------------------------------------------- 402 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH---------------------------------------------------------
Confidence 99999999999999999998764
Q ss_pred hhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHH
Q psy845 563 VELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLC 639 (677)
Q Consensus 563 ~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIa 639 (677)
.+++|++++||||||+||+|||||||+++. +++|||+++|++.++++++++++|+||||.+ +|.+||||||||||
T Consensus 403 --~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 403 --QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred --HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 467899999999999999999999999864 6899999999999999999999999999999 79999999999999
Q ss_pred HHHHHhccchhhcccccc
Q psy845 640 LARALLRKTKKKKKSGVN 657 (677)
Q Consensus 640 IARALLr~p~IL~~~~~T 657 (677)
||||+++||+++.+++-|
T Consensus 481 iARall~~~~iliLDE~T 498 (529)
T TIGR02868 481 LARALLADAPILLLDEPT 498 (529)
T ss_pred HHHHHhcCCCEEEEeCCc
Confidence 999999999999655544
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=630.22 Aligned_cols=488 Identities=19% Similarity=0.199 Sum_probs=349.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhcccccccc----ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHH
Q psy845 170 YHLISKVFRSVYLRSVFQNM----WSMLFAFLMICFVFPWFAL----PL---LIITTLYHLISKVFRSVYLRSVFQNMWS 238 (677)
Q Consensus 170 ~~~~~~~~~~~~~~~~~q~~----~~~~f~~~~~~~~~~~f~~----~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ 238 (677)
..+++...+.|+...++|++ ..++|+|++.. ++.|||. |+ .++++|.+.+++.+.. .+..++..++.
T Consensus 878 ~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~-~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~-~l~~~~~~i~~ 955 (1466)
T PTZ00265 878 AMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQ-EISFFDQDKHAPGLLSAHINRDVHLLKTGLVN-NIVIFTHFIVL 955 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444455555555555554 45899998885 6699964 34 5666777777776654 46678899999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-------------HHHhcccHHHHHHHHHchH
Q psy845 239 MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRE-----LKRM-------------ENVSRSPIFSNVSSTVSGL 300 (677)
Q Consensus 239 ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~-----~~r~-------------~~~~~s~l~s~~~E~l~Gi 300 (677)
++++++++++++|+++++++++.++. .+.+.++.+. ..+. .++..++..+.++|+++|+
T Consensus 956 ~i~~~~~~~~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi 1032 (1466)
T PTZ00265 956 FLVSMVMSFYFCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNM 1032 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcH
Confidence 99999899999998877665444333 2222222221 1111 1122355688999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy845 301 HIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHV 378 (677)
Q Consensus 301 ~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l 378 (677)
++||+|+.|+++.++|++..+...+...+..............+.. .+.++++|.+++.+|.+++|.+..++.+....
T Consensus 1033 ~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~ 1112 (1466)
T PTZ00265 1033 NTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFT 1112 (1466)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887766554433332222222222222 14456677788999999999988877665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccce
Q psy845 379 TGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANV 457 (677)
Q Consensus 379 ~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknI 457 (677)
..++..+...+.+++++.+|.+|+.++++. +++.+...... .......+..|+|+|+||+|+|+++ +.+||+|+
T Consensus 1113 ~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~-~~~~~~~~~~~----~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~l 1187 (1466)
T PTZ00265 1113 GSYAGKLMSLKGDSENAKLSFEKYYPLIIR-KSNIDVRDNGG----IRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDL 1187 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCcCCCCCCcc----cccccCCCCCceEEEEEEEEECCCCCCCccccCe
Confidence 566778888899999999999999999943 33211111000 0000011235789999999999854 34799999
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc----cHH-HhhhhcccccCCccccccccccCC
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV----ELE-TLRSRLSVIPQDPVLFNGIVGRTG 532 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l----~~~-~~~~~i~~v~q~~~lf~~~~~~n~ 532 (677)
||+|+|||++|||||||||||||++||+|+|+|+.|.+...+.+...- +.. ..-.++ ..+-..--|+...+. +
T Consensus 1188 sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~ 1265 (1466)
T PTZ00265 1188 TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQN-VGMKNVNEFSLTKEG-G 1265 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccc-ccccccccccccccc-c
Confidence 999999999999999999999999999999999877776644332220 000 000000 000000011111111 1
Q ss_pred CCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccch
Q psy845 533 AGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLK 611 (677)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~ 611 (677)
+++.+- ..|++|+|++||.|+++.+.+++|++||||||||+||+|||||||+++. +++|||+++|++.|+++
T Consensus 1266 ~~~~~~-------~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~ 1338 (1466)
T PTZ00265 1266 SGEDST-------VFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAID 1338 (1466)
T ss_pred cccccc-------cCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCH
Confidence 111111 3478999999999999999999999999999999999999999999874 68999999999999999
Q ss_pred hhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------------cc---cccc-e-----
Q psy845 612 SKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK----------------------KK---SGVN-I----- 658 (677)
Q Consensus 612 efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL----------------------~~---~~~T-I----- 658 (677)
+||++||+||||.+ +|.+|||||||||||||||+|||+++ .. +++| |
T Consensus 1339 ~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHR 1418 (1466)
T PTZ00265 1339 EFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418 (1466)
T ss_pred HHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEech
Confidence 99999999999999 89999999999999999999999987 12 4788 2
Q ss_pred ecccccccEEEEEeC----Cee
Q psy845 659 TRPVTSCDKVLVMDN----GQA 676 (677)
Q Consensus 659 LsTI~~aDrIlVLd~----GrI 676 (677)
++++++||+|+||++ |++
T Consensus 1419 lsti~~aD~Ivvl~~~~~~G~i 1440 (1466)
T PTZ00265 1419 IASIKRSDKIVVFNNPDRTGSF 1440 (1466)
T ss_pred HHHHHhCCEEEEEeCCCCCCCE
Confidence 788999999999999 884
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-65 Score=572.55 Aligned_cols=438 Identities=22% Similarity=0.281 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQN----MWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSM 239 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~----~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~l 239 (677)
+.+.+....++++..+..++ +...+|.|++... ..+|+. ++ .+++.|.+.+++.+. ..+..++.+++.+
T Consensus 65 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~-~~~~~~~~~g~~~~~l~~di~~i~~~~~-~~~~~~i~~~~~~ 142 (571)
T TIGR02203 65 VLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLP-VSFFDRQPTGTLLSRITFDSEQVASAAT-DAFIVLVRETLTV 142 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHhCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33444444445555554444 5558899988864 478853 33 566666666766553 4556688889999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHH
Q psy845 240 LFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQ 319 (677)
Q Consensus 240 l~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~ 319 (677)
++.++++++++|++++++++..++..++...+.++.++..+...+..++..+.+.|.++|+++||+++.|+++.+++++.
T Consensus 143 ~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~ 222 (571)
T TIGR02203 143 IGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAV 222 (571)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHH
Confidence 99999999999999998888888888888888888888777777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 320 YDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFL 397 (677)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~ 397 (677)
.++..+...+......+.......+..+ +.++++|.+.+.+|.+++|.+.++..++..+..|+..+......++++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~ 302 (571)
T TIGR02203 223 SNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLA 302 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776655554444444333333322 33455666788899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCCh
Q psy845 398 AVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGK 477 (677)
Q Consensus 398 s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGK 477 (677)
+.+|+.++++. +++.+.... . . .+..++|+++||+|+|+++++++|+|+||++++||++||+|||||||
T Consensus 303 ~~~ri~~~l~~-~~~~~~~~~--------~-~-~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGK 371 (571)
T TIGR02203 303 AAESLFTLLDS-PPEKDTGTR--------A-I-ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGK 371 (571)
T ss_pred HHHHHHHHHcC-CCCCCCCCC--------C-C-CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCH
Confidence 99999999843 322211100 0 0 12346799999999998755679999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 478 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 478 STLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
|||+++|+|+|+|++|+|++||+|++++
T Consensus 372 STLl~lL~gl~~~~~G~I~i~g~~i~~~---------------------------------------------------- 399 (571)
T TIGR02203 372 STLVNLIPRFYEPDSGQILLDGHDLADY---------------------------------------------------- 399 (571)
T ss_pred HHHHHHHHhccCCCCCeEEECCEeHHhc----------------------------------------------------
Confidence 9999999999999999999999999988
Q ss_pred cchhhhhHHHHhhhcccccccccccccchhhccccCC--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChH
Q psy845 558 FDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLG 633 (677)
Q Consensus 558 ~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGG 633 (677)
+.+++|++++||||||++|+|||+|||+++. +.+|+|++++++.+|+++++.++|+|+||.+ +|.+||||
T Consensus 400 ------~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 400 ------TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred ------CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 8889999999999999999999999999874 6899999999999999999999999999999 78999999
Q ss_pred HHHHHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 634 EKQLLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 634 QRQRIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
|||||+||||++++|+++ ..+++| | .+.++.||+|++|++|+++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEE
Confidence 999999999999999987 124677 2 3456789999999999974
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=573.64 Aligned_cols=436 Identities=21% Similarity=0.220 Sum_probs=345.9
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHH
Q psy845 170 YHLISKVFRSVYLR----SVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSML 240 (677)
Q Consensus 170 ~~~~~~~~~~~~~~----~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll 240 (677)
.+.+....+.+... ++.+++...+|+|++... .+||+. ++ .++|.|.+.+++.+ ...++.++.+++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~-~~~~~~~~~g~~~srl~~Dv~~l~~~~-~~~~~~~~~~~~~~~ 149 (574)
T PRK11160 72 GRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLS-PAGLARYRQGDLLNRLVADVDTLDHLY-LRLISPLVAALVVIL 149 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-hHhhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444444444444 444556669999999874 488853 33 66677777777755 345677888888899
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHH
Q psy845 241 FAFLMICFVFPWFALPLLIITTLYH-LISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQ 319 (677)
Q Consensus 241 ~~~v~l~~~~~~lal~~l~i~~l~~-~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~ 319 (677)
+.++++++++|++++++++..++.. ++...+.+..++..+..++..+++++.+.|.++|+++||+|+.|+++.+++++.
T Consensus 150 ~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~ 229 (574)
T PRK11160 150 VLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQT 229 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999887765555443 345666666666666677778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy845 320 YDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASH-VTGLLQFTVRVFVETELNF 396 (677)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~-l~~~l~~l~~~~~~l~~~~ 396 (677)
.++..+...+......+.......+..+ +.++++|.+. .+|.++.|.+.+++.|... ..+++..+...+..++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (574)
T PRK11160 230 EQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888776655554444443333333332 2233445555 4788999988887777544 4568888888889999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCC
Q psy845 397 LAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAG 476 (677)
Q Consensus 397 ~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSG 476 (677)
+|.+|+.++++ .+++.+.+.. . ...+..+.|+++||+|+|+++++++|+|+||+++|||++|||||||||
T Consensus 309 ~s~~ri~~ll~-~~~~~~~~~~--------~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsG 378 (574)
T PRK11160 309 ASARRINEITE-QKPEVTFPTT--------S-TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCG 378 (574)
T ss_pred HHHHHHHHHHh-CCCCCCCCcc--------c-CCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCC
Confidence 99999999984 3333211100 0 011234679999999999865457999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccccccc
Q psy845 477 KSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKID 556 (677)
Q Consensus 477 KSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~ 556 (677)
||||+++|+|+|+|++|+|.+||+|++++
T Consensus 379 KSTL~~ll~g~~~p~~G~I~i~g~~i~~~--------------------------------------------------- 407 (574)
T PRK11160 379 KSTLLQLLTRAWDPQQGEILLNGQPIADY--------------------------------------------------- 407 (574)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEEhhhC---------------------------------------------------
Confidence 99999999999999999999999999998
Q ss_pred ccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChH
Q psy845 557 DFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLG 633 (677)
Q Consensus 557 ~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGG 633 (677)
+.+++|++++||||||++|++||+|||+++. +++|+|+++|++.+++++++++ |+||||.+ +|.+||||
T Consensus 408 -------~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 408 -------SEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred -------CHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 8899999999999999999999999998864 5899999999999999999999 99999999 89999999
Q ss_pred HHHHHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 634 EKQLLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 634 QRQRIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
||||++||||+++||+++ ..+++| | ++++++||||+||++|+++
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~ 552 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQII 552 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEE
Confidence 999999999999999977 134677 2 6688899999999999984
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=583.83 Aligned_cols=440 Identities=22% Similarity=0.282 Sum_probs=351.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--chhHHh--hhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 168 TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PLLIIT--TLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~~~~t--~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
.+.+.+..-......+++..++...+|.|++.+ +..||+. ++..++ ++.+.+++.+.+..++ .+.++...++.+
T Consensus 193 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l-~~~~f~~~~~g~~~~rl~d~~~i~~~~~~~~~~-~~~~~~~~~~~~ 270 (694)
T TIGR01846 193 PALGGLRTYLFAHLTSRIDVELGARLYRHLLGL-PLGYFESRRVGDTVARVRELEQIRNFLTGSALT-VVLDLLFVVVFL 270 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHcCCCCHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 334444444444455555666666999999997 5599953 443333 3555566655444444 454555555556
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHH
Q psy845 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDEN 323 (677)
Q Consensus 244 v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~ 323 (677)
+++++++|++++++++..+++..+...+.+..++..+...+..++.++.+.|+++|+++||++|.|+.+.++|++..++.
T Consensus 271 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 350 (694)
T TIGR01846 271 AVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAY 350 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHH
Confidence 78889999999888877777777777776666665555556667889999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER 401 (677)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eR 401 (677)
.+...+......+.......+..+ +..+++|.+++.+|.+|+|.+.++.++...+..|+..+...+.+++.+..+.+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 430 (694)
T TIGR01846 351 VAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALER 430 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655554444444333333322 334566777889999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 402 INNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 402 I~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
+.++++ .++|.... . .....+..+.|+++||+|+|+++++++|+|+||+++|||++|||||||||||||+
T Consensus 431 i~~~l~-~~~e~~~~-~--------~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~ 500 (694)
T TIGR01846 431 LGDILN-SPTEPRSA-G--------LAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLT 500 (694)
T ss_pred HHHHHc-CCCCccCC-C--------CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHH
Confidence 999984 33332111 0 0001123568999999999986656799999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 482 ~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
++|+|+|+|++|+|++||+|++++
T Consensus 501 ~ll~g~~~p~~G~I~idg~~i~~~-------------------------------------------------------- 524 (694)
T TIGR01846 501 KLLQRLYTPQHGQVLVDGVDLAIA-------------------------------------------------------- 524 (694)
T ss_pred HHHhcCCCCCCceEEECCEehhhC--------------------------------------------------------
Confidence 999999999999999999999998
Q ss_pred hhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHH
Q psy845 562 SVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638 (677)
Q Consensus 562 ~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI 638 (677)
+.+++|++++|||||+++|+|||+|||++++ +++++++++|++.++++++++++|+|+||.+ +|.+||||||||+
T Consensus 525 --~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 525 --DPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred --CHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 8889999999999999999999999999764 6899999999999999999999999999999 7999999999999
Q ss_pred HHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
+||||++++|+++ ..+++| | +++++.||||+||++|+++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~ 670 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIA 670 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEE
Confidence 9999999999977 124577 2 5678889999999999984
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-64 Score=565.23 Aligned_cols=434 Identities=20% Similarity=0.235 Sum_probs=345.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy845 167 TTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLF 241 (677)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~ 241 (677)
..+.+.+..-......+++.+++...+|.|+... +..||+ .++ .++++|.+.+++.+. ..+..++.+++..++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~-~~~~~~~~~~g~~~~~l~~di~~i~~~~~-~~~~~~~~~~~~~~~ 134 (529)
T TIGR02857 57 RALLGWLGERAAARAAAAVKSQLRERLLAAVAAL-GPGWLQGRPSGELATLALEGVEALDGYFA-RYLPQLVLAVIIPLA 134 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhccCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344444444555566666677777999999986 558994 333 666677777777554 345667788888888
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHH
Q psy845 242 AFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYD 321 (677)
Q Consensus 242 ~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~ 321 (677)
.+++++.++|+++++++...++...+...+.++.++..+..++..++..+.+.|.++|+++||+|+.|+++.++|++..+
T Consensus 135 ~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~ 214 (529)
T TIGR02857 135 ILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSE 214 (529)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHH
Confidence 88888899999888777777766666666666666666666666778999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 322 ENSTTLFLCSMAMRWLAVRIDVLAVIA--MAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399 (677)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~~l~--~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~ 399 (677)
+..+...+......+.......+..+. ...+.+++.+.+|.+++|.+.++..++..+..|+..+...+..++.+..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~ 294 (529)
T TIGR02857 215 EYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAA 294 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776655444333333333333322221 122334445568999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHH
Q psy845 400 ERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS 479 (677)
Q Consensus 400 eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKST 479 (677)
+|+.++++. +++.... . . ...+..++|+++||+|+|+++++++|+|+||+++|||++||||||||||||
T Consensus 295 ~ri~~ll~~-~~~~~~~-~--------~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKST 363 (529)
T TIGR02857 295 EALFAVLDA-PRPLAGK-A--------P-VTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKST 363 (529)
T ss_pred HHHHHHhCC-CcccCCC-c--------C-CCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHH
Confidence 999999842 2221110 0 0 011123579999999999876557999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 480 LLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 480 Li~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
|+++|+|+|+|++|+|.+||+|++++
T Consensus 364 L~~ll~g~~~~~~G~I~~~g~~i~~~------------------------------------------------------ 389 (529)
T TIGR02857 364 LLNLLLGFVDPTEGSIAVNGVPLADA------------------------------------------------------ 389 (529)
T ss_pred HHHHHhcCCCCCCcEEEECCEehhhC------------------------------------------------------
Confidence 99999999999999999999999998
Q ss_pred hhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHH
Q psy845 560 IASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQ 636 (677)
Q Consensus 560 ~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQ 636 (677)
+.+++|++++||||||++|++||+|||+++. +++|+++++|++.++++++++++|+|+||.+ +|.+|||||||
T Consensus 390 ----~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 390 ----DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred ----CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 8889999999999999999999999999864 5789999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEE
Q psy845 637 LLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVM 671 (677)
Q Consensus 637 RIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVL 671 (677)
|++||||+++||+++ ..+++| | +++++.||||+||
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999976 125677 2 5678899999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=607.64 Aligned_cols=424 Identities=21% Similarity=0.248 Sum_probs=350.0
Q ss_pred HHHHHHHHHHHHhhhccccccccc--h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy845 186 FQNMWSMLFAFLMICFVFPWFALP--L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLII 260 (677)
Q Consensus 186 ~q~~~~~~f~~~~~~~~~~~f~~~--~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i 260 (677)
.++|...-++.+++ |++.|||+- + +++++|.+.+++.++. -++.+++.+.++++.+++.++..|+++++++..
T Consensus 103 ~~riR~~yl~~iLr-Qdi~~fD~~~~g~~~~~l~~d~~~I~d~~ge-Kvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~ 180 (1228)
T KOG0055|consen 103 TARIRSKYLKAILR-QDIGWFDTNSTGELVTRLSDDIELIQDAIGE-KVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSF 180 (1228)
T ss_pred HHHHHHHHHHHHHh-CccceeecccccceEEEecCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666676777777 899999864 2 7778888888887765 446799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 261 TTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVR 340 (677)
Q Consensus 261 ~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (677)
.|+..+....+.+...+....++.+.++..+..+|++++++||.+|+.|+++.++|.+..+...+...+...........
T Consensus 181 ~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~ 260 (1228)
T KOG0055|consen 181 IPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGF 260 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99998888888887777777777777888899999999999999999999999999999988776554433322211111
Q ss_pred H--HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q psy845 341 I--DVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPIT 418 (677)
Q Consensus 341 l--~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~ 418 (677)
. -+....+.++++|..++.++..++|.+...+.....-...+.+....+..+..+.+|+.+|.+.++..++.+... .
T Consensus 261 ~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-~ 339 (1228)
T KOG0055|consen 261 TFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS-K 339 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccc-c
Confidence 1 112223556777777888888888876655544444445566667777888999999999999995433322211 1
Q ss_pred CccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 419 SEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
+ . . .....+|+|+|+||+|+||.+ +.++|+|+||+|++||++|+||||||||||+++||.|||||++|+|++
T Consensus 340 ~-----~-~-~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~i 412 (1228)
T KOG0055|consen 340 G-----G-R-VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLI 412 (1228)
T ss_pred c-----C-C-cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEE
Confidence 1 0 0 111257899999999999977 347999999999999999999999999999999999999999999999
Q ss_pred CCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc
Q psy845 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 577 (677)
Q Consensus 498 dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q 577 (677)
||.|++++ +.++||++||+|.|
T Consensus 413 dG~di~~~----------------------------------------------------------~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 413 DGEDIRNL----------------------------------------------------------NLKWLRSQIGLVSQ 434 (1228)
T ss_pred cCccchhc----------------------------------------------------------chHHHHhhcCeeee
Confidence 99999999 89999999999999
Q ss_pred cccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 578 DPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 578 d~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
||.||++||+|||+++. +++++|+.+|+|++++++||.+||+||||.+ +|.+|||||||||||||||+|||+||
T Consensus 435 ePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLD 514 (1228)
T KOG0055|consen 435 EPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLD 514 (1228)
T ss_pred chhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEec
Confidence 99999999999999986 7999999999999999999999999999999 89999999999999999999999988
Q ss_pred --------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..+|+| | +|||++||+|+||++|+||
T Consensus 515 EaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 515 EATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 246787 2 8999999999999999986
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-63 Score=562.78 Aligned_cols=426 Identities=21% Similarity=0.305 Sum_probs=342.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy845 182 LRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALP 256 (677)
Q Consensus 182 ~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~ 256 (677)
.+.+-+++...+|.|+... +..||+. ++ .++++|.+.+.+.+. ..+..++..++..++.+++++.++|+++++
T Consensus 84 ~~~~~~~l~~~l~~~l~~~-~~~~~~~~~~g~~~~~~~~di~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 161 (588)
T PRK13657 84 AHRRRLAVLTEYFERIIQL-PLAWHSQRGSGRALHTLLRGTDALFGLWL-EFMREHLATLVALVVLLPLALFMNWRLSLV 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHHHHCcCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555899999987 4588843 34 555555555554432 344556667777777777888899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 257 LLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRW 336 (677)
Q Consensus 257 ~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (677)
++++.+++..+.+.+.++.++..+...+..+++.+.+.|.++|++++|.|+.++.+.+++++..++..+...+......+
T Consensus 162 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK13657 162 LVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWAL 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887778888888887777777777788999999999999999999999999999998888876655443333323
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy845 337 LAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGR 414 (677)
Q Consensus 337 ~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~ 414 (677)
.....+.+.. .+.++++|.+.+.+|.+++|.+.+++.++..+..|+..+...+..+..+..+.+|+.++++. +++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~-~~~~~ 320 (588)
T PRK13657 242 ASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDA-VPDVR 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccC
Confidence 2222222221 13445667778899999999999999999999999999999999999999999999998843 22211
Q ss_pred CCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE
Q psy845 415 GPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494 (677)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~ 494 (677)
.... .... .+..+.|+++||+|+|+++ +++|+|+|++++|||++|||||||||||||+++|+|+|+|++|+
T Consensus 321 ~~~~-------~~~~-~~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~ 391 (588)
T PRK13657 321 DPPG-------AIDL-GRVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391 (588)
T ss_pred CCCC-------CCCc-CCCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 1100 0000 1124579999999999854 46999999999999999999999999999999999999999999
Q ss_pred EEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccc
Q psy845 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 574 (677)
Q Consensus 495 I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~ 574 (677)
|.+||+|++++ +.+++|++|+|
T Consensus 392 I~i~g~~i~~~----------------------------------------------------------~~~~~r~~i~~ 413 (588)
T PRK13657 392 ILIDGTDIRTV----------------------------------------------------------TRASLRRNIAV 413 (588)
T ss_pred EEECCEEhhhC----------------------------------------------------------CHHHHHhheEE
Confidence 99999999998 88999999999
Q ss_pred ccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh
Q psy845 575 IPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 575 V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
|||||++|+|||||||++++ +++|+|++++++.+++++++.++|+|+||.+ +|.+||||||||++||||++++|+++
T Consensus 414 v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 414 VFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred EecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999874 6889999999999999999999999999998 79999999999999999999999977
Q ss_pred -----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|+ ++.++.||||++|++|+++
T Consensus 494 iLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 494 ILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEE
Confidence 1246772 4567889999999999974
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=555.20 Aligned_cols=433 Identities=24% Similarity=0.320 Sum_probs=347.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy845 177 FRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFP 251 (677)
Q Consensus 177 ~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~ 251 (677)
+.....+++..++...+|+++.... ..||+. ++ .++++|.+.+++.+. ..+..++.+++.+++++++++.++|
T Consensus 81 ~~~~~~~~~~~~lr~~l~~~l~~~~-~~~~~~~~~g~~~~~~~~d~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (576)
T TIGR02204 81 LVTWLGERVVADIRRAVFAHLISLS-PSFFDKNRSGEVVSRLTTDTTLLQSVIG-SSLSMALRNALMCIGGLIMMFITSP 158 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-HHHHccCCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344445555556668899988874 478843 43 566666777766443 3456677888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 252 WFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCS 331 (677)
Q Consensus 252 ~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 331 (677)
++++++++..++...+...+.++.++..+...+..++..+.+.|.++|+++||+++.|+.+.+++++..++..+...+..
T Consensus 159 ~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (576)
T TIGR02204 159 KLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRI 238 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777777777777777777777777777777889999999999999999999999999999998887766554443
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy845 332 MAMRWLAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409 (677)
Q Consensus 332 ~~~~~~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~ 409 (677)
....+.......+.. .+..+++|.+.+.+|.+++|.+.++..++..+..|+..+...+.+++.+..+.+|+.++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~- 317 (576)
T TIGR02204 239 RTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQA- 317 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 333333332222221 13344566778889999999999999999999999999999999999999999999999842
Q ss_pred CCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCC-CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNW-PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 410 ~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~-~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++.+.... ......+..+.|+++||+|+|++++ +++|+|+||+++|||++||+||||||||||+++|+|+|
T Consensus 318 ~~~~~~~~~-------~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 318 EPDIKAPAH-------PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred CCcCCCCCC-------CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 222111100 0001112345799999999998643 57999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH
Q psy845 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568 (677)
Q Consensus 489 ~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L 568 (677)
+|++|+|.+||+|++++ +.+++
T Consensus 391 ~p~~G~I~i~g~~i~~~----------------------------------------------------------~~~~~ 412 (576)
T TIGR02204 391 DPQSGRILLDGVDLRQL----------------------------------------------------------DPAEL 412 (576)
T ss_pred CCCCCEEEECCEEHHhc----------------------------------------------------------CHHHH
Confidence 99999999999999988 88899
Q ss_pred hhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHh
Q psy845 569 RSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645 (677)
Q Consensus 569 R~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALL 645 (677)
|++++|+||||++|+|||+|||+++. +.+|++++++++.++++++++++|+|+||.+ +|.+||||||||++||||++
T Consensus 413 ~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 413 RARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred HHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999764 5789999999999999999999999999999 78999999999999999999
Q ss_pred ccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 646 RKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 646 r~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
++|+++ ..+++| | .+.++.||||++|++|+++
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~ 553 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIV 553 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 999977 124667 2 3456789999999999974
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-62 Score=550.62 Aligned_cols=430 Identities=17% Similarity=0.242 Sum_probs=341.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy845 176 VFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL 255 (677)
Q Consensus 176 ~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal 255 (677)
-......+++..++..++|+|+..... ..+..-..++++|.+.+++.+....+..++..++.++.. +++++++|++++
T Consensus 68 ~~~~~~~~~~~~~lr~~~~~~ll~~~~-~~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~l 145 (544)
T TIGR01842 68 FVLVRIGEKLDGALNQPIFAASFSATL-RRGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGI 145 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc-cCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHH
Confidence 333444455555566689999888643 444333577788888888866554555566666655544 568889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 256 PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMR 335 (677)
Q Consensus 256 ~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (677)
+++...+++..+...+.+..++..+..++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+......
T Consensus 146 i~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (544)
T TIGR01842 146 LALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAG 225 (544)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666666666665666666778889999999999999999999999999999988887665544333222
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy845 336 WLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEG 413 (677)
Q Consensus 336 ~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~ 413 (677)
........+..+ +.++++|.+++.+|.+|+|.+.+++.++..+..|+..+.....+++.+..+.+|+.++++. +++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~-~~~~ 304 (544)
T TIGR01842 226 MLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLAN-YPSR 304 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-Cccc
Confidence 222222222211 3345567778889999999999999999999999999999999999999999999999843 2221
Q ss_pred CCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 414 RGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
... . . ..+..+.|+++||+|+|+++++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|
T Consensus 305 ~~~-~--------~--~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 373 (544)
T TIGR01842 305 DPA-M--------P--LPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373 (544)
T ss_pred cCC-C--------C--CCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 111 0 0 0112457999999999986555799999999999999999999999999999999999999999
Q ss_pred EEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcc
Q psy845 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 573 (677)
Q Consensus 494 ~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~ 573 (677)
+|.+||+|++++ +.+++|++++
T Consensus 374 ~i~~~g~~i~~~----------------------------------------------------------~~~~~~~~i~ 395 (544)
T TIGR01842 374 SVRLDGADLKQW----------------------------------------------------------DRETFGKHIG 395 (544)
T ss_pred eEEECCEehhhC----------------------------------------------------------CHHHHhhheE
Confidence 999999999888 7788999999
Q ss_pred cccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchh
Q psy845 574 VIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKK 650 (677)
Q Consensus 574 ~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~I 650 (677)
||||||++|++|++||+++++ ++++++++++++.++++++++++|+|+||.+ +|.+||||||||++||||+++||++
T Consensus 396 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i 475 (544)
T TIGR01842 396 YLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL 475 (544)
T ss_pred EecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999998654 4899999999999999999999999999999 7999999999999999999999997
Q ss_pred h----------------------cc--cccce------ecccccccEEEEEeCCeeC
Q psy845 651 K----------------------KK--SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 651 L----------------------~~--~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+ .. +++|+ +++++.||+|++|++|+++
T Consensus 476 lilDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~ 532 (544)
T TIGR01842 476 VVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIA 532 (544)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 6 11 35772 4567789999999999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-62 Score=552.62 Aligned_cols=438 Identities=18% Similarity=0.222 Sum_probs=346.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
+.+.+...+.....+++-.++..++|+|+... +..||+ .++ .++|+|.+.+.... ...+..++..++..++.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~-~~~~~~~~~~g~i~srl~~Dv~~i~~~~-~~~~~~~~~~~~~~~~~~ 128 (569)
T PRK10789 51 LLRYVWRVLLFGASYQLAVELREDFYRQLSRQ-HPEFYLRHRTGDLMARATNDVDRVVFAA-GEGVLTLVDSLVMGCAVL 128 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHcCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34444444444455666666777999999986 448884 344 55555666655322 334455666655555555
Q ss_pred HHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHH
Q psy845 244 LMI-CFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE 322 (677)
Q Consensus 244 v~l-~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~ 322 (677)
+++ +.++|++++++++..++..++.+.+.++.++..+..++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++
T Consensus 129 ~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~ 208 (569)
T PRK10789 129 IVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAED 208 (569)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHH
Confidence 455 4788988888777778877888888887777666667777889999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVE 400 (677)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~e 400 (677)
..+...+.................+ +.++++|.+++.+|.+++|.+.++..+...+..|+..+...+..++.+..+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ 288 (569)
T PRK10789 209 TGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYS 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665554443333322222222211 33445566788899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHH
Q psy845 401 RINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSL 480 (677)
Q Consensus 401 RI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTL 480 (677)
|+.++++. +++.... . .. ..+..++|+++||+|+|+++++++|+|+||+++|||++|||||||||||||
T Consensus 289 ri~~ll~~-~~~~~~~-~-------~~--~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL 357 (569)
T PRK10789 289 RIRAMLAE-APVVKDG-S-------EP--VPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTL 357 (569)
T ss_pred HHHHHHcC-CCcccCC-C-------CC--CCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHH
Confidence 99999843 2221111 0 00 011346799999999998655579999999999999999999999999999
Q ss_pred HHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 481 LVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 481 i~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+++|+|+|+|++|+|.+||+|++++
T Consensus 358 l~ll~g~~~p~~G~i~~~g~~~~~~------------------------------------------------------- 382 (569)
T PRK10789 358 LSLIQRHFDVSEGDIRFHDIPLTKL------------------------------------------------------- 382 (569)
T ss_pred HHHHhcccCCCCCEEEECCEEHhhC-------------------------------------------------------
Confidence 9999999999999999999999888
Q ss_pred hhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHH
Q psy845 561 ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQL 637 (677)
Q Consensus 561 ~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQR 637 (677)
+.+++|++++||||||++|++|++|||+++. ++++++++++++.+++++++.++|+|+||.+ +|.+||||||||
T Consensus 383 ---~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qR 459 (569)
T PRK10789 383 ---QLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR 459 (569)
T ss_pred ---CHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHH
Confidence 7889999999999999999999999999864 6899999999999999999999999999999 789999999999
Q ss_pred HHHHHHHhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 638 LCLARALLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 638 IaIARALLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
++||||++++|+++ ..+++|+ +++++.||+|++|++|+++
T Consensus 460 i~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~ 528 (569)
T PRK10789 460 ISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIA 528 (569)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEE
Confidence 99999999999977 1256772 4567889999999999974
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=549.67 Aligned_cols=423 Identities=19% Similarity=0.283 Sum_probs=342.2
Q ss_pred HHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy845 185 VFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLI 259 (677)
Q Consensus 185 ~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~ 259 (677)
+..++..++|+|+.... ..||+. ++ .++++|.+.+.+.+. ..+..++..++.+++.+++++.++|++++++++
T Consensus 87 ~~~~lr~~~~~~l~~l~-~~~~~~~~~g~~~s~~~~d~~~i~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 164 (585)
T TIGR01192 87 RRATLLTEAFGRIISMP-LSWHQQRGTSNALHTLLRATETLFGLWL-EFMRQHLATFVALFLLIPTAFAMDWRLSIVLMV 164 (585)
T ss_pred HHHHHHHHHHHHHHcCC-HHHhCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344458999999974 599953 34 556666666665443 455566777777777778888999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 260 ITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAV 339 (677)
Q Consensus 260 i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (677)
+.+++.++.+.+.++.++..+...+..+++.+.+.|+++|+++||+|+.|+.+.+++++..++..+...+..........
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (585)
T TIGR01192 165 LGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASG 244 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777777777788999999999999999999999999999998888766554443332222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q psy845 340 RIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPI 417 (677)
Q Consensus 340 ~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~ 417 (677)
....+..+ +.++++|.+++.+|.+++|.+.++..++..+..|+..+...+.+++.+..+.+|+.++++. +++.+.+.
T Consensus 245 ~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~-~~~~~~~~ 323 (585)
T TIGR01192 245 LNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDS-VFQREEPA 323 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccccCCc
Confidence 22222221 3345567778889999999999999999999999999999999999999999999998843 22211110
Q ss_pred CCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 418 TSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
. .....+..+.++++||+|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 324 ~--------~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 324 D--------APELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred c--------CCCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 0 00011124579999999999864 35999999999999999999999999999999999999999999999
Q ss_pred CCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc
Q psy845 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 577 (677)
Q Consensus 498 dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q 577 (677)
||+|++++ +.+++|++++||||
T Consensus 395 ~g~~~~~~----------------------------------------------------------~~~~~~~~i~~v~q 416 (585)
T TIGR01192 395 DGIDINTV----------------------------------------------------------TRESLRKSIATVFQ 416 (585)
T ss_pred CCEEhhhC----------------------------------------------------------CHHHHHhheEEEcc
Confidence 99999888 78899999999999
Q ss_pred cccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 578 DPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 578 d~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
||++|++|++|||.++. +++++|++++++.+++++++.++|+|+||.+ +|.+||||||||++||||++++|+++
T Consensus 417 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililD 496 (585)
T TIGR01192 417 DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLD 496 (585)
T ss_pred CCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999998764 5789999999999999999999999999998 79999999999999999999999977
Q ss_pred --------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|+ +++++.||+|++|++|+++
T Consensus 497 Epts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 497 EATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred CCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 1246772 4567889999999999974
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=542.90 Aligned_cols=415 Identities=24% Similarity=0.337 Sum_probs=322.7
Q ss_pred HHHHHHHHHhhhcccccc--c-cc-h----hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy845 189 MWSMLFAFLMICFVFPWF--A-LP-L----LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLII 260 (677)
Q Consensus 189 ~~~~~f~~~~~~~~~~~f--~-~~-~----~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i 260 (677)
+-..+|+|+-.++. +|+ + +. + .|=|+..+.++.+.-+.. |.++.-.+.++ .+....++|+.+++++.
T Consensus 294 ie~~lfrHlh~LSl-rwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~-PtllDl~va~v---YF~~~Fn~wFgLIVfl~ 368 (790)
T KOG0056|consen 294 IETELFRHLHNLSL-RWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIG-PTLLDLGVAMV---YFFIKFNIWFGLIVFLM 368 (790)
T ss_pred HHHHHHHHHHhhce-eeeecccccceeehhccCcchhhHHHHHHhhcc-cHHHHhhhhhh---hhhhhHhHHHHHHHHHH
Confidence 34489999999976 999 3 33 2 444667776666553322 33333332222 22345689999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 261 TTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVR 340 (677)
Q Consensus 261 ~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (677)
..++..+......--.+.+|....+..+-.+.-.+++-+.+|||-|++|+.+.++|.+....+.+..++.......+...
T Consensus 369 m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~ 448 (790)
T KOG0056|consen 369 MLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIV 448 (790)
T ss_pred HHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877653222111111122222222333456788999999999999999999999999999888776655444333322
Q ss_pred HHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCC
Q psy845 341 IDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGR-GPI 417 (677)
Q Consensus 341 l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~-~~~ 417 (677)
-+.+..+ +...++..+.+..+.+++|..+.+.+|..++..|++.+....-.+|.++.-.|+++|++++ ++|.. .|.
T Consensus 449 Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllke-e~eVvd~P~ 527 (790)
T KOG0056|consen 449 QNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKE-EPEVVDLPG 527 (790)
T ss_pred hhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhc-CchhhcCCC
Confidence 2222221 1111122235568899999999999999999999999999999999999999999999954 44422 111
Q ss_pred CCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 418 TSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
. . +-...+|+|+|+||+|.|+++ ++||+||||+++||+++|+|||||+||||++++|.||||.++|+|.|
T Consensus 528 a--------~-pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~i 597 (790)
T KOG0056|consen 528 A--------P-PLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITI 597 (790)
T ss_pred C--------C-CccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEE
Confidence 1 1 111247899999999999877 57999999999999999999999999999999999999999999999
Q ss_pred CCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc
Q psy845 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 577 (677)
Q Consensus 498 dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q 577 (677)
||+||+++ +..+||++||+|||
T Consensus 598 DgqdIrnv----------------------------------------------------------t~~SLRs~IGVVPQ 619 (790)
T KOG0056|consen 598 DGQDIRNV----------------------------------------------------------TQSSLRSSIGVVPQ 619 (790)
T ss_pred cCchHHHH----------------------------------------------------------HHHHHHHhcCcccC
Confidence 99999998 89999999999999
Q ss_pred cccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 578 DPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 578 d~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
|..||++||.+||++++ .+++||+++|++.|++||-|.++||||+|++ +|-+||||||||+||||+++|+|.|.
T Consensus 620 DtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLD 699 (790)
T KOG0056|consen 620 DTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLD 699 (790)
T ss_pred cceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEc
Confidence 99999999999999876 6999999999999999999999999999999 89999999999999999999999876
Q ss_pred --------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..++|| | +||+.+||.|+|++||+|+
T Consensus 700 EATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~Iv 751 (790)
T KOG0056|consen 700 EATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIV 751 (790)
T ss_pred chhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEe
Confidence 135677 3 8999999999999999986
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=527.19 Aligned_cols=446 Identities=21% Similarity=0.252 Sum_probs=354.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcccccc-ccc-h---hHHhhhHHHHHHHhhhhHHHHH
Q psy845 162 PLLIITTLYHLISKVFRSVYLRSVFQ----NMWSMLFAFLMICFVFPWF-ALP-L---LIITTLYHLISKVFRSVYLRSV 232 (677)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~q----~~~~~~f~~~~~~~~~~~f-~~~-~---~~~t~~~~~i~~v~~s~~l~~i 232 (677)
..|++...+|.+..-.+.......++ +|....+.++-...+ .|= ..| + ++.+.=+|.... +.+.++|..
T Consensus 44 ~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp-~~~~~~~~g~~atl~~egve~l~~-Y~~ryLPq~ 121 (559)
T COG4988 44 ILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGP-AFIAQKPAGSAATLALEGIEQLEP-YYARYLPQM 121 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-hhhcCCCcchHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45666677777766665544444444 444466777777654 343 244 3 444444444444 346789999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHH
Q psy845 233 FQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDF 312 (677)
Q Consensus 233 l~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~ 312 (677)
+.+.+..+..++.+++.+|.-++++++..|++.++.....++.++..+.+......+.+++.|.++|+.|+|.|++.+..
T Consensus 122 ~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~ 201 (559)
T COG4988 122 FLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEAT 201 (559)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHH
Confidence 99999999999999999999888887777777777777777777777777777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 313 VRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAI--ITGLTVAFH-GSVSPALAGLALTYASHVTGLLQFTVRVF 389 (677)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l--~~g~~lv~~-G~ls~g~l~~~l~~~~~l~~~l~~l~~~~ 389 (677)
.++..+..+++++.....-+.....+..+++++.+.+++ +..+..... |.++......++..+..++.|+..+...+
T Consensus 202 ~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~f 281 (559)
T COG4988 202 EERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFF 281 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999998888766554444434445566666533322 222234445 78988877788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEE
Q psy845 390 VETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469 (677)
Q Consensus 390 ~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAI 469 (677)
+.-..+.++.+++..+++ .+++.....+ +....+..+.+++.+|++|+|++++ ++++|+||++++||++||
T Consensus 282 H~~~~g~aa~d~i~~~l~-~~~~~~~~~~-------~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~tal 352 (559)
T COG4988 282 HAAAAGEAAADKLFTLLE-SPVATPGSGE-------KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTAL 352 (559)
T ss_pred HHHhhhhhHHHHHHHHhc-CCCCCCCCcc-------ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEE
Confidence 999999999999999983 3333221110 0011122234566679999999875 799999999999999999
Q ss_pred EcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhc
Q psy845 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS 549 (677)
Q Consensus 470 VGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~ 549 (677)
||+||||||||+++|+|+.+|++|+|.+||+|.+++
T Consensus 353 vG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l-------------------------------------------- 388 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL-------------------------------------------- 388 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCCCCCceEEECCcccccc--------------------------------------------
Confidence 999999999999999999999999999999999999
Q ss_pred cccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--C
Q psy845 550 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--Q 626 (677)
Q Consensus 550 ~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~ 626 (677)
+.++||+++++|||+|+||+|||||||++++ +++|||+++|++++++.||+.. |+|+||.+ +
T Consensus 389 --------------~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~ 453 (559)
T COG4988 389 --------------SPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEG 453 (559)
T ss_pred --------------CHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccC
Confidence 8999999999999999999999999999876 5899999999999999999999 99999999 8
Q ss_pred CCCCChHHHHHHHHHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 627 GDQLSLGEKQLLCLARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 627 G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
|.+|||||+||+++|||++++++++ ..+++| | ++.+++||+|+|||+||++
T Consensus 454 G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~ 533 (559)
T COG4988 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLV 533 (559)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCcee
Confidence 9999999999999999999998866 235677 2 5678899999999999985
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-61 Score=525.74 Aligned_cols=423 Identities=25% Similarity=0.314 Sum_probs=319.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HhhH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICF-VFPW 252 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~-~~~~ 252 (677)
+...|.+.+...++.|.|.|.+. .+||-. ++ .++.|=...++++... .+..++..++-+......+.+ ..+.
T Consensus 99 a~v~q~~iR~~~~~vf~~~~~ld-~~~~~~~~tG~l~~~idRgsraI~~vl~~-~V~~i~p~~~~i~~v~~~l~~~~Ga~ 176 (591)
T KOG0057|consen 99 AKVAQRVIRDSSSDVFRHLMSLD-LSFFLSRGTGALNRIIDRGSRAISFVLSA-MVFNIIPTLFEIALVSGILYYKFGAA 176 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-HHhhcCCCcchHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 55666666667779999999985 599944 34 3334444556666643 333344444443333322222 2344
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q psy845 253 FALPLLIITTLYHLIS---KVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFL 329 (677)
Q Consensus 253 lal~~l~i~~l~~~i~---~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~ 329 (677)
.+++++.....+..++ ...|.+.| +..+.+.......+-|++.+.++||.||-|+++.++|+....++.+....
T Consensus 177 ~~li~~~~v~~Y~a~Ti~~t~~Rn~fR---~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~ 253 (591)
T KOG0057|consen 177 FALITLGTVGAYAAFTIVVTRWRNRFR---KAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLK 253 (591)
T ss_pred HHHHHHHHHHHhheeEEeehhHHHHHH---HHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhh
Confidence 5555554444444332 22222222 22333344566789999999999999999999999999999998877766
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy845 330 CSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSK 407 (677)
Q Consensus 330 ~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~ 407 (677)
+......+.+.-..+... ..+...+..-+.+|.++.|.+....++..++..|++.+...+.++.++..-.+......+
T Consensus 254 ~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~ 333 (591)
T KOG0057|consen 254 YSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLE 333 (591)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 655544444333333221 222333333456789999999999999999999999999999999888887766655432
Q ss_pred hcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 408 KLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 408 ~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
..+..... ..+.. ..++.|+|+||+|+|+++ ++||+++||+|++||+|||||+|||||||++|+|+||
T Consensus 334 ~~~~i~~~----------~~~i~-~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF 401 (591)
T KOG0057|consen 334 VDEDIQEA----------ALPIE-LFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF 401 (591)
T ss_pred hhhhhhhc----------cCCcc-cCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 11111000 00111 235679999999999876 4699999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 488 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 488 y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
+| ++|+|+|||+|++++ ++++
T Consensus 402 ~d-~sG~I~IdG~dik~~----------------------------------------------------------~~~S 422 (591)
T KOG0057|consen 402 FD-YSGSILIDGQDIKEV----------------------------------------------------------SLES 422 (591)
T ss_pred hc-cCCcEEECCeeHhhh----------------------------------------------------------ChHH
Confidence 99 999999999999999 8999
Q ss_pred HhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHH
Q psy845 568 LRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARAL 644 (677)
Q Consensus 568 LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARAL 644 (677)
+|+.|||||||..||++||-+||.+++ ++++||+.++||.+++||-+.++|+||+|.+ +|..||||||||+++|||+
T Consensus 423 lR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred hhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 999999999999999999999999876 7899999999999999999999999999999 9999999999999999999
Q ss_pred hccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 645 LRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 645 Lr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
+|||||+ ...++| | ++++++||+|+|+|||++.
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~ 564 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVK 564 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeE
Confidence 9999987 256788 2 7899999999999999974
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=529.76 Aligned_cols=441 Identities=14% Similarity=0.126 Sum_probs=333.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
+.+.+...+......++-+++...+|+|++.. +..||+. ++ .++|+|.+.+++.+. . +..++.+++++++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~-~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~-~~~~~~~~~~~~~~~ 144 (555)
T TIGR01194 68 LFRIGADIFPAYAGMHIIANLRIALCEKILGA-PIEEIDRRGAHNLIPLLTHDIDQINAFLF-I-FPPIAIALAIFFFCI 144 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHhcCcchhhHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHHHH
Confidence 33334434445555556666777999999996 4589842 33 778888888888764 3 566788888888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHH--HHHHHHHHHHH
Q psy845 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQ--DFVRRFCEQYD 321 (677)
Q Consensus 244 v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~--~~~~~~~~~~~ 321 (677)
+++++++|++++++++.+++..++...+.++.++..+..++..+++++.+.|.++|++++|+|+.++ ...+++++..+
T Consensus 145 ~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~ 224 (555)
T TIGR01194 145 AYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESAN 224 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHH
Confidence 8999999999888777777776666666666666566666667889999999999999999999954 45677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 322 ENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER 401 (677)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eR 401 (677)
+..+..................+..+..++.+.. ....|.++.|.+.+++.+...+.+|+..+...+.+++++.+|.+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~r 303 (555)
T TIGR01194 225 NIADLHIIEILIFIAAENFGQLLFFLLIGCALFA-AAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQR 303 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655443332222111111122211111111100 112378999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC---CCccccceeeEEeCCcEEEEEcCCCCChH
Q psy845 402 INNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKS 478 (677)
Q Consensus 402 I~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~---~~~VLknISl~I~~GE~VAIVGpSGSGKS 478 (677)
+.++++...+++..+...+.+. ..........++|+++||+|+|+++ ++++|+|+||++++||++|||||||||||
T Consensus 304 i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKS 382 (555)
T TIGR01194 304 LADFGERFNEPEPELELSDADN-VLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKS 382 (555)
T ss_pred HHHHHhhhcccccccccccccc-ccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHH
Confidence 9999742111111000000000 0000001124679999999999753 23699999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccccccccc
Q psy845 479 SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558 (677)
Q Consensus 479 TLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~ 558 (677)
||+++|+|+|+|++|+|.+||+|++++
T Consensus 383 Tl~~ll~g~~~p~~G~i~~~g~~i~~~----------------------------------------------------- 409 (555)
T TIGR01194 383 TLAKLFCGLYIPQEGEILLDGAAVSAD----------------------------------------------------- 409 (555)
T ss_pred HHHHHHhCCCCCCCcEEEECCEECCCC-----------------------------------------------------
Confidence 999999999999999999999999998
Q ss_pred chhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHH
Q psy845 559 DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638 (677)
Q Consensus 559 ~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRI 638 (677)
+.+++|+++++|+||+++|++|++||+. .++++++++++++.++++++++++|+||||. .+||||||||+
T Consensus 410 -----~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~---~~LSgGq~qRl 479 (555)
T TIGR01194 410 -----SRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT---TALSTGQQKRL 479 (555)
T ss_pred -----CHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc---ccCCHHHHHHH
Confidence 7889999999999999999999999974 3578999999999999999999999999994 79999999999
Q ss_pred HHHHHHhccchhh-----------------------c--ccccce------ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK-----------------------K--KSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL-----------------------~--~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+||||++++|+++ . .+++|+ +++++.||+|+||++|+++
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIV 549 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 9999999999976 0 136772 4577889999999999984
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-58 Score=503.20 Aligned_cols=397 Identities=23% Similarity=0.294 Sum_probs=310.0
Q ss_pred hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Q psy845 211 LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLI-ITTLYHLISKVFRIAVRELKRMENVSRSPI 289 (677)
Q Consensus 211 ~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~-i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l 289 (677)
.|++.|+|.+++.+--...| .+..+....+..+.+.+.+|++++.+.. +..+.++++..+.+..++..+.....++.+
T Consensus 119 ~RLvaDVd~Ld~lyLRvi~P-~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~l 197 (573)
T COG4987 119 NRLVADVDALDNLYLRVIAP-AVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAAL 197 (573)
T ss_pred HHHHhhHHHHhhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 77788888888777655555 4444445555555667888887765443 344445567777777777777777778889
Q ss_pred HHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHhcCCCHHH
Q psy845 290 FSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA-IITGLT-VAFHGSVSPAL 367 (677)
Q Consensus 290 ~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~-l~~g~~-lv~~G~ls~g~ 367 (677)
.+++.|.+.|..+.+.||+++.+.+++.+..+...+...+......|....+.++..+.++ ..++.. .+-.|..+...
T Consensus 198 r~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~ 277 (573)
T COG4987 198 RSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPG 277 (573)
T ss_pred HHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhH
Confidence 9999999999999999999999999998888877776666666666655555444442222 222222 24456665433
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEe
Q psy845 368 AGLALTYASHVTGLLQFTV-RVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRY 446 (677)
Q Consensus 368 l~~~l~~~~~l~~~l~~l~-~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY 446 (677)
+.+++.......+++..+. ..+.+.++...|++|+.++.+ .++|...+.+ .... .+..++++||||+|
T Consensus 278 aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~-q~~e~~~~~~--------~~~~--~~~~l~~~~vsF~y 346 (573)
T COG4987 278 AALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILD-QKPEVTFPDE--------QTAT--TGQALELRNVSFTY 346 (573)
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhcc-CCcccCCCcc--------ccCC--ccceeeeccceeec
Confidence 3333433345555665555 677889999999999999984 3333222211 0111 11279999999999
Q ss_pred CCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccc
Q psy845 447 RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526 (677)
Q Consensus 447 ~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~ 526 (677)
+++++++|+|+||++++||||||+|||||||||++++++|-|+|++|+|..+|.|++++
T Consensus 347 ~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l--------------------- 405 (573)
T COG4987 347 PGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL--------------------- 405 (573)
T ss_pred CCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC---------------------
Confidence 99887899999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDAL 605 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al 605 (677)
+.+++|+.+++++|+++||++|+|||++..+ ++||||+++|+
T Consensus 406 -------------------------------------~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL 448 (573)
T COG4987 406 -------------------------------------DEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAAL 448 (573)
T ss_pred -------------------------------------ChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 8889999999999999999999999998754 79999999999
Q ss_pred HHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-----------------------cccccce--
Q psy845 606 EKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-----------------------KKSGVNI-- 658 (677)
Q Consensus 606 ~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~TI-- 658 (677)
+++|+++++++.|+||||.+ +|.+||||||||+||||++++|+|++ ..+|||+
T Consensus 449 ~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~ 528 (573)
T COG4987 449 QQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLM 528 (573)
T ss_pred HHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999 89999999999999999999999865 3578882
Q ss_pred ----ecccccccEEEEEeCCeeC
Q psy845 659 ----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 ----LsTI~~aDrIlVLd~GrIV 677 (677)
+.-++.||||+|||+||++
T Consensus 529 vTHrL~~le~~drIivl~~Gkii 551 (573)
T COG4987 529 VTHRLRGLERMDRIIVLDNGKII 551 (573)
T ss_pred EecccccHhhcCEEEEEECCeee
Confidence 4456789999999999985
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-58 Score=564.40 Aligned_cols=437 Identities=17% Similarity=0.227 Sum_probs=336.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cch----hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LPL----LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~~----~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
++..+...+..+..+++-+++..++|+|++.. ++.||| .|. ++++.|.+.+++.+ +..+..++..++++++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~-~~~~fd~~~~~~l~s~l~~d~~~i~~~i-~~~~~~~~~~~~~~i~~~ 189 (1466)
T PTZ00265 112 ILSFISSFCMDVVTTKILKTLKLEFLKSVFYQ-DGQFHDNNPGSKLTSDLDFYLEQVNAGI-GTKFITIFTYASAFLGLY 189 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33444444445555566666667999999996 569996 454 33333344455543 345678899999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHH
Q psy845 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDEN 323 (677)
Q Consensus 244 v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~ 323 (677)
+++++++|.++++++++.|+++++...+.++.+...+..+...++..+.++|+++|+++||+|+.|+.+.++|++..+..
T Consensus 190 i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~ 269 (1466)
T PTZ00265 190 IWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLY 269 (1466)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999998888898888888888888777777777778899999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMAMRWLAVRIDVLAV--IAMAIITGLTVAFHG--------SVSPALAGLALTYASHVTGLLQFTVRVFVETE 393 (677)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~~--l~~~l~~g~~lv~~G--------~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~ 393 (677)
.+...+.............++.. .++++++|..++.+| .+++|.+.+++.+.......+..+...+..++
T Consensus 270 ~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~ 349 (1466)
T PTZ00265 270 SKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYM 349 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554443333332222222222 244556677777775 46777666655544444444556666788899
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcC
Q psy845 394 LNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGR 472 (677)
Q Consensus 394 ~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGp 472 (677)
.+..|.+|+.++++. +++.+...+ ....+..++|+++||+|+|+++ +.++|+|+||++++||++|||||
T Consensus 350 ~a~~a~~ri~~ii~~-~~~~~~~~~---------~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~ 419 (1466)
T PTZ00265 350 KSLEATNSLYEIINR-KPLVENNDD---------GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGE 419 (1466)
T ss_pred HHHHHHHHHHHHHcC-CCCCCCCCC---------CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECC
Confidence 999999999999943 333211110 0011122479999999999864 24699999999999999999999
Q ss_pred CCCChHHHHHHHhcCCCCCccEEEE-CCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccc
Q psy845 473 TGAGKSSLLVALFRLVELSSGQIKI-DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSG 551 (677)
Q Consensus 473 SGSGKSTLi~LL~r~y~p~~G~I~I-dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g 551 (677)
||||||||+++|+|+|+|++|+|.+ ||+|++++
T Consensus 420 SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~---------------------------------------------- 453 (1466)
T PTZ00265 420 SGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI---------------------------------------------- 453 (1466)
T ss_pred CCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC----------------------------------------------
Confidence 9999999999999999999999999 57898887
Q ss_pred cccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-------------------------------------
Q psy845 552 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG------------------------------------- 594 (677)
Q Consensus 552 ~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~------------------------------------- 594 (677)
+.+++|++||||||+|.||++||+|||+++.
T Consensus 454 ------------~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1466)
T PTZ00265 454 ------------NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD 521 (1466)
T ss_pred ------------CHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccch
Confidence 7778888888888888888889999887631
Q ss_pred ---------------------CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 ---------------------RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 ---------------------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+++|+++++|++.+++++|+.++|+||||.+ +|.+||||||||++||||++++|+++
T Consensus 522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~IL 601 (1466)
T PTZ00265 522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKIL 601 (1466)
T ss_pred hhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 2567899999999999999999999999999 79999999999999999999999977
Q ss_pred ----------------------cc---cccc-e-----ecccccccEEEEEeCCe
Q psy845 652 ----------------------KK---SGVN-I-----TRPVTSCDKVLVMDNGQ 675 (677)
Q Consensus 652 ----------------------~~---~~~T-I-----LsTI~~aDrIlVLd~Gr 675 (677)
.. +++| | +++++.||+|+||++|+
T Consensus 602 lLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 602 ILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCc
Confidence 11 3677 2 56788999999999984
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-59 Score=497.41 Aligned_cols=426 Identities=23% Similarity=0.317 Sum_probs=332.8
Q ss_pred HHHHHHHHHH----HHHHHHhhhcccccc--cc--chhHH-hhhHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHhh
Q psy845 182 LRSVFQNMWS----MLFAFLMICFVFPWF--AL--PLLII-TTLYHLISKVFRSVYLRSVFQNMWSMLF-AFLMICFVFP 251 (677)
Q Consensus 182 ~~~~~q~~~~----~~f~~~~~~~~~~~f--~~--~~~~~-t~~~~~i~~v~~s~~l~~il~~~~~ll~-~~v~l~~~~~ 251 (677)
.-+++|+... .-|.|...+.. +|+ +. |..|. .+=-.-|+.+.. +.+..++.-++-+.. +.++...++|
T Consensus 6 fs~v~q~a~r~la~~~F~h~~~Lsl-~fHl~r~TGglsR~ierGtkgI~~i~~-~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 6 FSPVGQIAVRVLAYVTFFHLHSLSL-RFHLERRTGGLSRAIERGTKGIETILR-WILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcch-hhhhhcccCceeeHhhcCcccHHHHHH-HHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 3445555554 56999999864 999 22 22322 111112333332 222223333332222 2233445789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 252 WFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCS 331 (677)
Q Consensus 252 ~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 331 (677)
|.++++++.++++.++......---..+|..+++.++.++...+++-+.+++|.|+-|+.+.++|++..+.+.++..+..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99988888888887775443333334455566677888899999999999999999999999999999999988776666
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy845 332 MAMRWLAVRIDVLAVIA--MAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409 (677)
Q Consensus 332 ~~~~~~~~~l~~l~~l~--~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~ 409 (677)
....|++..-..+.... .....+..-+..|.+|+|.++...++..+++.|++.+.....++.++....|+..++++ .
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~-~ 242 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD-V 242 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc-c
Confidence 55555554333332211 12223334567899999999999999999999999999999999999999999999983 3
Q ss_pred CCCCCCCCCCccccccccccCC-CCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 410 VPEGRGPITSEFGQVKVKLADW-PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 410 ~~e~~~~~~~~~~~~~~~~~~~-~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.+...... .+.-+ ...|.+.|+||+|.|.++ .++|+|+||++++|+++|+|||||+||||+.++|.|||
T Consensus 243 ~~~v~d~pd--------a~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 243 EAEVSDAPD--------APPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred chhhccCCC--------CccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 333221100 11122 246889999999999877 46999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH
Q psy845 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568 (677)
Q Consensus 489 ~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L 568 (677)
|+++|+|.+||+|++++ ..+++
T Consensus 314 D~~sG~I~id~qdir~v----------------------------------------------------------tq~sl 335 (497)
T COG5265 314 DVNSGSITIDGQDIRDV----------------------------------------------------------TQQSL 335 (497)
T ss_pred CCcCceEEEcchhHHHh----------------------------------------------------------HHHHH
Confidence 99999999999999998 89999
Q ss_pred hhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHh
Q psy845 569 RSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645 (677)
Q Consensus 569 R~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALL 645 (677)
|+.||+||||..||++|+..|+.+++ .+++||+++|+|.+++++|++.+|+||||.| +|-.||||||||+||||++|
T Consensus 336 R~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~il 415 (497)
T COG5265 336 RRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTIL 415 (497)
T ss_pred HHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHh
Confidence 99999999999999999999999876 6899999999999999999999999999999 89999999999999999999
Q ss_pred ccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 646 RKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 646 r~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
|+|+|+ ..+++| | +||+.+||.|+||+||+|+
T Consensus 416 k~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~ 476 (497)
T COG5265 416 KNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476 (497)
T ss_pred cCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEE
Confidence 999987 135677 3 8999999999999999985
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=486.57 Aligned_cols=422 Identities=18% Similarity=0.169 Sum_probs=310.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy845 171 HLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLM 245 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~ 245 (677)
..+.+-......+++-+++..++|+|+... +.+||+. ++ .++|+|.+.+...+. .++.++.+++.+++++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~-~~~~~~~~~~g~~lsrl~~dv~~i~~~~~--~l~~~~~~~~~~i~~~~~ 141 (547)
T PRK10522 65 TLGSQLALTTLGHHFVYRLRSEFIKRILDT-HVERIEQLGSASLLASLTSDVRNITIAFV--RLPELVQGIILTLGSAAY 141 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHhccCccchHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 333434445555666667777999999987 4588843 33 666777777666432 356788888889999989
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccH---HHHHHHHHHHHHH
Q psy845 246 ICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKE---QDFVRRFCEQYDE 322 (677)
Q Consensus 246 l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e---~~~~~~~~~~~~~ 322 (677)
+++++|++++++++..++..++...+.++.++..+..++..+++++.+.|.++|+++++ ++.+ +.+.+++++..++
T Consensus 142 l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~ 220 (547)
T PRK10522 142 LAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQE 220 (547)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHH
Confidence 99999999988888888777777777777776666666777889999999999999996 4443 3556777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHG---SVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399 (677)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G---~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~ 399 (677)
..+............. ....+......+..++..| ..+.+....+..+...+..|+..+...+.+++.+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~ 296 (547)
T PRK10522 221 YRHHIIRADTFHLSAV----NWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAF 296 (547)
T ss_pred HHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333221111111 1111111112222222222 22333344444444456789999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHH
Q psy845 400 ERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS 479 (677)
Q Consensus 400 eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKST 479 (677)
+|+.++.+. +++.+.+.. . ..+..+.++++||+|+|+++ +++|+|+||+++|||++||||||||||||
T Consensus 297 ~ri~~l~~~-~~~~~~~~~--------~--~~~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKST 364 (547)
T PRK10522 297 NKLNKLALA-PYKAEFPRP--------Q--AFPDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKST 364 (547)
T ss_pred HHHHHHhcc-ccccccccc--------c--ccCcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHH
Confidence 999998732 221110100 0 01123579999999999854 46999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 480 LLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 480 Li~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
|+++|+|+|+|++|+|.+||+|++++
T Consensus 365 L~~ll~g~~~~~~G~i~~~g~~~~~~------------------------------------------------------ 390 (547)
T PRK10522 365 LAMLLTGLYQPQSGEILLDGKPVTAE------------------------------------------------------ 390 (547)
T ss_pred HHHHHhCCCCCCCeEEEECCEECCCC------------------------------------------------------
Confidence 99999999999999999999999888
Q ss_pred hhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHH
Q psy845 560 IASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLC 639 (677)
Q Consensus 560 ~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIa 639 (677)
+.+++|++++|||||+++|++|++|| +.+.++++++++++.+++++++. .|+|. ++|.+||||||||++
T Consensus 391 ----~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~-~~~~~---~~G~~LSgGq~qRl~ 459 (547)
T PRK10522 391 ----QPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLE-LEDGR---ISNLKLSKGQKKRLA 459 (547)
T ss_pred ----CHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhh-ccccC---CCCCCCCHHHHHHHH
Confidence 78899999999999999999999999 34677889999999999988775 35553 268999999999999
Q ss_pred HHHHHhccchhh-----------------------cc--cccce------ecccccccEEEEEeCCeeC
Q psy845 640 LARALLRKTKKK-----------------------KK--SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 640 IARALLr~p~IL-----------------------~~--~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
||||+++||+++ .. .++|+ +++++.||+|+||++|+++
T Consensus 460 lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 460 LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLS 528 (547)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEE
Confidence 999999999976 01 36772 5567889999999999974
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=536.47 Aligned_cols=409 Identities=16% Similarity=0.203 Sum_probs=305.0
Q ss_pred HHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy845 185 VFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLI 259 (677)
Q Consensus 185 ~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~ 259 (677)
+-..+.+.+|++.+.+.. .+|+. ++ .+++.|.+.+++.. ..+..+....+.++++++++...-.+.+++.++
T Consensus 372 ir~~l~~~i~~k~l~l~~-~~~~~~~~G~i~n~ls~Dv~~i~~~~--~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~ 448 (1495)
T PLN03232 372 LRSTLVAAIFHKSLRLTH-EARKNFASGKVTNMITTDANALQQIA--EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSL 448 (1495)
T ss_pred HHHHHHHHHHHHHhcCCh-hhcCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334455589999988765 66643 33 56677777777754 244455555555555444332211111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 260 ITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAV 339 (677)
Q Consensus 260 i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (677)
+.++...+...+.++.++..+...+..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+......+...
T Consensus 449 v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~ 528 (1495)
T PLN03232 449 ILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSF 528 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233444555555555555666677889999999999999999999999999988877765554443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Q psy845 340 RIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITS 419 (677)
Q Consensus 340 ~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~ 419 (677)
.......++.++.+|.+.+.+|.+++|.+.+++++...+..|+..+...+..+.++..|.+|+.++++. +++...+.
T Consensus 529 ~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~-~~~~~~~~-- 605 (1495)
T PLN03232 529 ILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS-EERILAQN-- 605 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cccccccc--
Confidence 222222223335567777788999999999999999999999999999999999999999999999843 22211110
Q ss_pred ccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC
Q psy845 420 EFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498 (677)
Q Consensus 420 ~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id 498 (677)
.+ ..+..+.|+++|++|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|++.
T Consensus 606 -------~~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-- 675 (1495)
T PLN03232 606 -------PP-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-- 675 (1495)
T ss_pred -------CC-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--
Confidence 00 01123579999999999853 35799999999999999999999999999999999999999998652
Q ss_pred CEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccc
Q psy845 499 DFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 578 (677)
Q Consensus 499 G~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd 578 (677)
.+|++|+||||+
T Consensus 676 --------------------------------------------------------------------~~~~~Iayv~Q~ 687 (1495)
T PLN03232 676 --------------------------------------------------------------------VIRGSVAYVPQV 687 (1495)
T ss_pred --------------------------------------------------------------------EecCcEEEEcCc
Confidence 246789999999
Q ss_pred ccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 579 PVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 579 ~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
|+||+|||||||.++.++++|++++|++.|+++++++.||+|+||.+ +|.+||||||||||||||+++||+++
T Consensus 688 p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 688 SWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred cccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999998888899999999999999999999999999999 89999999999999999999999976
Q ss_pred -------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 -------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..+++| | +++++.||+|++|++|+++
T Consensus 768 tSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 768 LSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIK 818 (1495)
T ss_pred ccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEE
Confidence 125677 3 4567889999999999974
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-54 Score=534.54 Aligned_cols=406 Identities=15% Similarity=0.195 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy845 187 QNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIIT 261 (677)
Q Consensus 187 q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i~ 261 (677)
..+.+.+|++.+.+.. .+++. ++ .++|.|.+.+.+.+. .+..+....+.++++++++...-.+.+++.++++
T Consensus 374 ~~L~~~i~~k~L~l~~-~~~~~~~~G~ivnl~s~Dv~~i~~~~~--~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~ 450 (1622)
T PLN03130 374 STLVAAVFRKSLRLTH-EGRKKFTSGKITNLMTTDAEALQQICQ--QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLML 450 (1622)
T ss_pred HHHHHHHHHHHhcCCh-hhcCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455588999988755 67732 33 666777777777653 3455666666666655544433333333323333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 262 TLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRI 341 (677)
Q Consensus 262 ~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 341 (677)
++...+...+.++.++..+...+..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+..........+.....
T Consensus 451 ~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 530 (1622)
T PLN03130 451 VLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFIL 530 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555667788999999999999999999999999998877765544333322222222111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCcc
Q psy845 342 DVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEF 421 (677)
Q Consensus 342 ~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~ 421 (677)
.....++.++.+|.+.+..|.+++|.+.+++++...+..|+..+...+..+.++..|.+|+.++++.. ++...+..
T Consensus 531 ~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~-e~~~~~~~--- 606 (1622)
T PLN03130 531 NSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE-ERVLLPNP--- 606 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-ccccccCC---
Confidence 22222233445666777889999999999999999999999999999999999999999999998432 21111100
Q ss_pred ccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc-cEEEECC
Q psy845 422 GQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS-GQIKIDD 499 (677)
Q Consensus 422 ~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~-G~I~IdG 499 (677)
+. .+..+.|+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++ |+|.+
T Consensus 607 ------~~-~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-- 677 (1622)
T PLN03130 607 ------PL-EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-- 677 (1622)
T ss_pred ------cc-cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--
Confidence 00 0123579999999999753 3579999999999999999999999999999999999999999 88863
Q ss_pred EecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc
Q psy845 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579 (677)
Q Consensus 500 ~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~ 579 (677)
|++|+||||+|
T Consensus 678 ---------------------------------------------------------------------~~~Iayv~Q~p 688 (1622)
T PLN03130 678 ---------------------------------------------------------------------RGTVAYVPQVS 688 (1622)
T ss_pred ---------------------------------------------------------------------cCeEEEEcCcc
Confidence 34789999999
Q ss_pred cccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------
Q psy845 580 VLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------ 651 (677)
Q Consensus 580 ~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------ 651 (677)
+||+|||||||.++.+.+++++++|++.|+++++++.||+|++|.+ +|.+||||||||||||||+++||+++
T Consensus 689 ~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEpt 768 (1622)
T PLN03130 689 WIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768 (1622)
T ss_pred ccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 9999999999999888889999999999999999999999999999 89999999999999999999999976
Q ss_pred ------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 ------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..+++| | ++.++.||+|++|++|+++
T Consensus 769 SALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~ 818 (1622)
T PLN03130 769 SALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIK 818 (1622)
T ss_pred cccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEE
Confidence 125677 3 4567889999999999974
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-55 Score=472.63 Aligned_cols=432 Identities=19% Similarity=0.261 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHhhhccccccccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy845 174 SKVFRSVYLRSVFQNMWS----MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFV 249 (677)
Q Consensus 174 ~~~~~~~~~~~~~q~~~~----~~f~~~~~~~~~~~f~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~ 249 (677)
+...++.++..++-++-. -.|+...+.....=-.-.+.-.-+|.+.+++...+..+.-++..-++.+... +++..
T Consensus 79 Ld~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~-v~fl~ 157 (580)
T COG4618 79 LDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLA-VIFLF 157 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccchhhHHHHHHHHcCCCcchhcCCchHHHHHH-HHHHH
Confidence 345556676666665554 2344432111100001112333568899999888878888888889888776 56788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q psy845 250 FPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFL 329 (677)
Q Consensus 250 ~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~ 329 (677)
+||+.+..+...++.+.+........++..++..+....-+.+...+..+.++|++.|......++|.+...++.+....
T Consensus 158 Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~ 237 (580)
T COG4618 158 HPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQER 237 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99998877777766666655555555554444445556667788889999999999999999999998888777655443
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy845 330 CSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSK 407 (677)
Q Consensus 330 ~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~ 407 (677)
.+-....++.....+-.. ..++..|.|++.+|++|+|.+.+..-.......|+...+..|.++..+..|.+|+.++++
T Consensus 238 asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~ 317 (580)
T COG4618 238 ASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLA 317 (580)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332333222222222 234445667999999999988887777888999999999999999999999999999995
Q ss_pred hcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 408 KLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 408 ~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+. |+...... - +..+|.+.++++++.=|+.++++|+|+||++++||-+|||||||||||||.|+|.|.
T Consensus 318 ~~-p~~~~~m~--------L---P~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 318 EL-PAAAERMP--------L---PAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred hC-ccccCCCC--------C---CCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcc
Confidence 43 32221111 0 113689999999997777777999999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 488 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 488 y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
+.|.+|+|++||-|++++ +.++
T Consensus 386 w~p~~G~VRLDga~l~qW----------------------------------------------------------d~e~ 407 (580)
T COG4618 386 WPPTSGSVRLDGADLRQW----------------------------------------------------------DREQ 407 (580)
T ss_pred cccCCCcEEecchhhhcC----------------------------------------------------------CHHH
Confidence 999999999999999999 8889
Q ss_pred HhhhcccccccccccccchhhccccC-CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHH
Q psy845 568 LRSRLSVIPQDPVLFNGTIRYNLDPF-GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARAL 644 (677)
Q Consensus 568 LR~~I~~V~Qd~~LFsgTIrENI~~~-~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARAL 644 (677)
+=++|||.|||..||+|||+|||.-+ ++.++|.+.+|++.++.||.|.++|+||||.+ +|..|||||||||++|||+
T Consensus 408 lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 408 LGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred hccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999644 47888899999999999999999999999999 8999999999999999999
Q ss_pred hccchhh------------------------cccccc-e-----ecccccccEEEEEeCCee
Q psy845 645 LRKTKKK------------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 645 Lr~p~IL------------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrI 676 (677)
+.||.++ +.+|.| | .+.+..+|+|+||++|++
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence 9999865 235666 2 456788999999999986
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=465.72 Aligned_cols=440 Identities=15% Similarity=0.113 Sum_probs=332.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc----chhHHhhhHHHHHHHhhhhHHHHHHHHH
Q psy845 161 LPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL----PLLIITTLYHLISKVFRSVYLRSVFQNM 236 (677)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~----~~~~~t~~~~~i~~v~~s~~l~~il~~~ 236 (677)
+++.++..+.+.+.+-+....++.+..++..+.|+|... ....+||. +..|+|.|.+.+.+.+. ..+..++..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~-~~~~~~d~~~g~~~srlt~Dv~~i~~~~~-~~~~~l~~~~ 223 (659)
T TIGR00954 146 PPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTF-YKVSNLDSRIQNPDQLLTQDVEKFCDSVV-ELYSNLTKPI 223 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCce-EEeccCCCCCCCccccHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344455555555555555666666666666677777444 45577753 45899999999988764 4556788899
Q ss_pred HHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHH
Q psy845 237 WSMLFAFLMICF-VFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRR 315 (677)
Q Consensus 237 ~~ll~~~v~l~~-~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~ 315 (677)
+.+++..+.++. .+|.+++++++..++..++.+++.++.++..+..++..+++.+.++|.++|+++||+|+.|+.+.++
T Consensus 224 ~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~ 303 (659)
T TIGR00954 224 LDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKET 303 (659)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHH
Confidence 988888877776 7888888888888899999999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHH-Hh----cCCCHHHHHH-HHHH---HHHHHHHH
Q psy845 316 FCEQYDENSTTLFLCSMAMRWLAVRIDVLAV---IAMA-IITGLTVA-FH----GSVSPALAGL-ALTY---ASHVTGLL 382 (677)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---l~~~-l~~g~~lv-~~----G~ls~g~l~~-~l~~---~~~l~~~l 382 (677)
+++..++..+...+......++....+++.. ..+. ++.|...+ .+ |.+|.|.... ++++ ...+..|+
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~ 383 (659)
T TIGR00954 304 VMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADAL 383 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877666655555444444444432 1111 22223222 22 7888886544 5554 45668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC----CC-CCCccc--------cccc-cccCCCCCccEEEEeeeEEeCC
Q psy845 383 QFTVRVFVETELNFLAVERINNCSKKLVPEGR----GP-ITSEFG--------QVKV-KLADWPRQGTIKFKNVSLRYRD 448 (677)
Q Consensus 383 ~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~----~~-~~~~~~--------~~~~-~~~~~~~~g~I~fknVsFsY~~ 448 (677)
..+.....+++++.++.+|+.++++..++.+. .+ .++..+ +... ........+.|+++||+|+|++
T Consensus 384 ~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~ 463 (659)
T TIGR00954 384 GRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN 463 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC
Confidence 99999999999999999999999853211100 00 000000 0000 0000012357999999999975
Q ss_pred CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccc
Q psy845 449 NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528 (677)
Q Consensus 449 ~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~ 528 (677)
+ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+|+
T Consensus 464 ~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------------------------- 513 (659)
T TIGR00954 464 G-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------------------------- 513 (659)
T ss_pred C-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------------------------
Confidence 4 3699999999999999999999999999999999999999999987642
Q ss_pred ccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC--------CCChHH
Q psy845 529 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG--------RCHDTE 600 (677)
Q Consensus 529 ~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~--------~~sdee 600 (677)
|++++||||+|.+|++|++||+.+.. +.++++
T Consensus 514 ----------------------------------------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~ 553 (659)
T TIGR00954 514 ----------------------------------------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKD 553 (659)
T ss_pred ----------------------------------------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHH
Confidence 35688999999999999999997542 356788
Q ss_pred HHHHHHHccchhhHhhhhcccCCCC-CCCCCChHHHHHHHHHHHHhccchhh---------------------cccccce
Q psy845 601 LWDALEKSHLKSKVVTMRSKLDSDV-QGDQLSLGEKQLLCLARALLRKTKKK---------------------KKSGVNI 658 (677)
Q Consensus 601 I~~Al~~a~l~efI~~LP~GldT~v-~G~~LSGGQRQRIaIARALLr~p~IL---------------------~~~~~TI 658 (677)
++++++.+++++++.+ |.|+||.. .+.+||||||||++||||++++|+++ ...++|+
T Consensus 554 i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tv 632 (659)
T TIGR00954 554 LEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITL 632 (659)
T ss_pred HHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEE
Confidence 9999999999999988 99999988 77899999999999999999999976 1235662
Q ss_pred ------ecccccccEEEEEeC
Q psy845 659 ------TRPVTSCDKVLVMDN 673 (677)
Q Consensus 659 ------LsTI~~aDrIlVLd~ 673 (677)
++.++.||+|++|+.
T Consensus 633 I~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 633 FSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EEEeCchHHHHhCCEEEEEeC
Confidence 456788999999984
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=482.21 Aligned_cols=407 Identities=15% Similarity=0.190 Sum_probs=295.2
Q ss_pred HHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy845 188 NMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITT 262 (677)
Q Consensus 188 ~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i~~ 262 (677)
.+.+.+|+|.+.+.. ..++. .+ ++++.|.+.+.+.. ..+..+....+.++++++++...-.+.+++.+.+++
T Consensus 392 ~L~~~iy~K~L~l~~-~~~~~~~~G~i~nl~s~D~~~i~~~~--~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~ 468 (1522)
T TIGR00957 392 AVMGAVYRKALVITN-SARKSSTVGEIVNLMSVDAQRFMDLA--TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMV 468 (1522)
T ss_pred HHHHHHHHHHHhCCh-hhcCCCCHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345599999999865 66632 34 44455555544433 244555556666565554443333334333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 263 LYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRID 342 (677)
Q Consensus 263 l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (677)
++..+...+.+..++.++...+...+..+.++|.++|+++||.++.|+.+.+++++..++..+........... .....
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~-~~~~~ 547 (1522)
T TIGR00957 469 LMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV-GTFTW 547 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44445555555555555555566677889999999999999999999999999988877665543332222111 11111
Q ss_pred HHHH-HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Q psy845 343 VLAV-IAMAIITGLTVAF--HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITS 419 (677)
Q Consensus 343 ~l~~-l~~~l~~g~~lv~--~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~ 419 (677)
.... ++..+.++.+.+. .+.++++.+...+++...+..|+..+...+..++++..|.+|+.++++. +++++...+.
T Consensus 548 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~-~~~~~~~~~~ 626 (1522)
T TIGR00957 548 VCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH-EELEPDSIER 626 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cccccccccc
Confidence 1111 1122233444444 3568888888888888889999999999999999999999999999943 2221111000
Q ss_pred ccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 420 EFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 420 ~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
........+.|+++|++|+|+++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 627 -------~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 699 (1522)
T TIGR00957 627 -------RTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG 699 (1522)
T ss_pred -------cccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC
Confidence 0000011247999999999986545799999999999999999999999999999999999999999998875
Q ss_pred EecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc
Q psy845 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579 (677)
Q Consensus 500 ~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~ 579 (677)
+++||||+|
T Consensus 700 -----------------------------------------------------------------------~i~yv~Q~~ 708 (1522)
T TIGR00957 700 -----------------------------------------------------------------------SVAYVPQQA 708 (1522)
T ss_pred -----------------------------------------------------------------------EEEEEcCCc
Confidence 368999999
Q ss_pred cccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------
Q psy845 580 VLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------ 651 (677)
Q Consensus 580 ~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------ 651 (677)
++|++||+|||.++.+.++++..++++.+++.+++..+|+|++|.+ +|.+||||||||++||||++++|+++
T Consensus 709 ~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred cccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9999999999998766777888899999999999999999999999 89999999999999999999999876
Q ss_pred ----------------c----ccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 ----------------K----KSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------~----~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
. .+++| | ++.++.||+|++|++|+++
T Consensus 789 saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~ 840 (1522)
T TIGR00957 789 SAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKIS 840 (1522)
T ss_pred cccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEE
Confidence 0 13567 2 3456779999999999974
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=454.32 Aligned_cols=436 Identities=16% Similarity=0.193 Sum_probs=323.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhccccccccc----hhHHhhhHHHHHHHhhhhHHHH
Q psy845 160 ALPLLIITTLYHLISKVFRSVYLRSVFQNMWS----MLFAFLMICFVFPWFALP----LLIITTLYHLISKVFRSVYLRS 231 (677)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~~~~~~~~~~q~~~~----~~f~~~~~~~~~~~f~~~----~~~~t~~~~~i~~v~~s~~l~~ 231 (677)
.+.++++..+++-++...--+..+++|=++.+ ++|+....+....=.+.. ..+++.|++.+++.. ..+..
T Consensus 244 ~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~--~~~h~ 321 (1381)
T KOG0054|consen 244 LAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA--CFLHL 321 (1381)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH--HHHHH
Confidence 33344444444444444445556666666665 566665555432211212 256677777777755 34455
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHH
Q psy845 232 VFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQD 311 (677)
Q Consensus 232 il~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~ 311 (677)
+....+.++.++..+...-.+-+++.+.+.+++..++....+..++.++.....+.+.....+|.++||++||.|+.|+.
T Consensus 322 ~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~ 401 (1381)
T KOG0054|consen 322 LWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKP 401 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHH
Confidence 66666777766665555444555555556666666777777777776666666677778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 312 FVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTV-AFHGSVSPALAGLALTYASHVTGLLQFTVRVFV 390 (677)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~l-v~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~ 390 (677)
|.++.++..++..+...+.................++.++.++.+. ...+.+++..+...+++...+..|+..+...+.
T Consensus 402 F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~ 481 (1381)
T KOG0054|consen 402 FLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVIS 481 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887665554443333322222222333333344445544 345577887888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEE
Q psy845 391 ETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGI 469 (677)
Q Consensus 391 ~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAI 469 (677)
.+-++.+|.+|+.+++..++.+ +.... .....+.+..|+++|.+|+++++ .++.|+||||+|++||.+||
T Consensus 482 ~~vqa~VS~~Ri~~fl~~~e~~-~~~~~--------~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaV 552 (1381)
T KOG0054|consen 482 QLVQAKVSLKRLKEFLLSEELD-PDSVE--------RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAV 552 (1381)
T ss_pred HHHHHHHHHHHHHHHhcCcccC-ccccc--------cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEE
Confidence 9999999999999999432211 11110 00111234569999999999763 44599999999999999999
Q ss_pred EcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhc
Q psy845 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS 549 (677)
Q Consensus 470 VGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~ 549 (677)
|||.|||||||+.+++|..+..+|++.++|
T Consensus 553 vG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------------------------------------------- 582 (1381)
T KOG0054|consen 553 VGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------------------------------------------- 582 (1381)
T ss_pred ECCCCCCHHHHHHHHhcCcccccceEEEcC--------------------------------------------------
Confidence 999999999999999999999999999987
Q ss_pred cccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CC
Q psy845 550 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QG 627 (677)
Q Consensus 550 ~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G 627 (677)
.++||||.|++|+|||||||.++.+.+++.-+++++.|+++..++.||.|-.|.+ +|
T Consensus 583 ---------------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG 641 (1381)
T KOG0054|consen 583 ---------------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERG 641 (1381)
T ss_pred ---------------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCc
Confidence 2799999999999999999999888999999999999999999999999999999 99
Q ss_pred CCCChHHHHHHHHHHHHhccchhh------------------------cccccc-e--e---cccccccEEEEEeCCeeC
Q psy845 628 DQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVN-I--T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 628 ~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~T-I--L---sTI~~aDrIlVLd~GrIV 677 (677)
.||||||||||++|||+++|++|. ..++|| | + +-+++||+|+||+||+|+
T Consensus 642 inLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 642 INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred cCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEe
Confidence 999999999999999999999875 246678 4 3 346789999999999984
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=456.91 Aligned_cols=426 Identities=15% Similarity=0.133 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhccccccc-c-ch---hHHhhhHHHHHHHhhhhHHHHHH
Q psy845 163 LLIITTLYHLISKVFRSVYLRSVFQNMWS----MLFAFLMICFVFPWFA-L-PL---LIITTLYHLISKVFRSVYLRSVF 233 (677)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~q~~~~----~~f~~~~~~~~~~~f~-~-~~---~~~t~~~~~i~~v~~s~~l~~il 233 (677)
.+++..+...++.....|..+.++.++.. .+|++.+.+.. ..++ . ++ .+++.|.+.+.+.+.. +..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~-~~~~~~~~g~i~nl~s~Dv~~i~~~~~~--~~~~~ 203 (1490)
T TIGR01271 127 GLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSS-RVLDKISTGQLVSLLSNNLNKFDEGLAL--AHFVW 203 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHhcCCCHHHHHHHHHHhHHHHHHHHHH--HHHHH
Confidence 33333444444445555566666666655 55999998864 4453 2 23 5555566666664432 23445
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHH
Q psy845 234 QNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFV 313 (677)
Q Consensus 234 ~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~ 313 (677)
...+.+++++++++...+|.+++.+.+++++..+..++.++..+.++.......+..+...|.++|+++||.++.|+.+.
T Consensus 204 ~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~ 283 (1490)
T TIGR01271 204 IAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAME 283 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHH
Confidence 66666677777777777777766666666677777777777777776666777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy845 314 RRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLL-QFTVRVFVET 392 (677)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l-~~l~~~~~~l 392 (677)
+++++..++..+..........+..........++.++.++.+.+..| .+++.+.+++++...+..++ ..+...+..+
T Consensus 284 ~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~ 362 (1490)
T TIGR01271 284 KIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTW 362 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888877665544433222121111111112222333444444444 67787777788887777776 5788889999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-----------------------
Q psy845 393 ELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN----------------------- 449 (677)
Q Consensus 393 ~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~----------------------- 449 (677)
.++.+|++||.++++. ++.+..+. . .....++++|++|+|+++
T Consensus 363 ~~a~~s~~RI~~fL~~-~e~~~~~~------------~-~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (1490)
T TIGR01271 363 YDSLGAITKIQDFLCK-EEYKTLEY------------N-LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDG 428 (1490)
T ss_pred HHHHHHHHHHHHHhcC-cccccccc------------c-CCCCceEEecceEecCCcccccccccccccccccccccccc
Confidence 9999999999999943 21111000 0 012347777877777421
Q ss_pred ---------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 450 ---------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 450 ---------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
.+++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.+||
T Consensus 429 ~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------------- 487 (1490)
T TIGR01271 429 LFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------------- 487 (1490)
T ss_pred ccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------------------
Confidence 13589999999999999999999999999999999999999999999876
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHH
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTE 600 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdee 600 (677)
+++||||+|++|++||+|||.++...++++
T Consensus 488 --------------------------------------------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 488 --------------------------------------------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred --------------------------------------------------EEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 268999999999999999998765666667
Q ss_pred HHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------------ccc
Q psy845 601 LWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------------KKS 654 (677)
Q Consensus 601 I~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~ 654 (677)
..++++.+++.+.++.+|+|.+|.+ +|.+||||||||++||||++++|+++ ..+
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~ 597 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS 597 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 7888999999999999999999999 79999999999999999999999876 124
Q ss_pred ccc-e-----ecccccccEEEEEeCCeeC
Q psy845 655 GVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 655 ~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
++| | ++.+..||+|++|++|+++
T Consensus 598 ~~tvilvtH~~~~~~~ad~ii~l~~g~i~ 626 (1490)
T TIGR01271 598 NKTRILVTSKLEHLKKADKILLLHEGVCY 626 (1490)
T ss_pred CCeEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 567 2 2345679999999999974
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=449.69 Aligned_cols=440 Identities=17% Similarity=0.194 Sum_probs=321.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhccccccc----cch---hHHhhhHHHHHHHhhhhHHHHH
Q psy845 164 LIITTLYHLISKVFRSVYLRSVFQNM----WSMLFAFLMICFVFPWFA----LPL---LIITTLYHLISKVFRSVYLRSV 232 (677)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~q~~----~~~~f~~~~~~~~~~~f~----~~~---~~~t~~~~~i~~v~~s~~l~~i 232 (677)
+++..+...++.....+...+++.++ .+.+|++.+.... .-+. +++ .++++|.+.+.+.+. .+..+
T Consensus 291 l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~-~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~--~~~~l 367 (1560)
T PTZ00243 291 LFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISS-KSLAQPDMNTGRIINMMSTDVERINSFMQ--YCMYL 367 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-hhhCCCCCCHHHHHHHHHHhHHHHHHHHH--HHHHH
Confidence 33334444444444455555555544 4488999887654 2232 223 566777777777653 34567
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHH
Q psy845 233 FQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDF 312 (677)
Q Consensus 233 l~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~ 312 (677)
....+.++++++++.....|.+++.++++++...++.+..++....++.......+..+...|.++|+++||.++.|+.+
T Consensus 368 ~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f 447 (1560)
T PTZ00243 368 WSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCF 447 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888777788777777676677777777777776666666666777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 313 VRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVET 392 (677)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l 392 (677)
.+++++..++..+..........+..........+..++.++.+.+..|.++++.+.++++++..+..|+..+...+..+
T Consensus 448 ~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~ 527 (1560)
T PTZ00243 448 VANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTV 527 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988776655443333332222222222222333455666677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCC----CC-CC------CCccccc----c----------c---------------------
Q psy845 393 ELNFLAVERINNCSKKLVPEG----RG-PI------TSEFGQV----K----------V--------------------- 426 (677)
Q Consensus 393 ~~~~~s~eRI~eil~~~~~e~----~~-~~------~~~~~~~----~----------~--------------------- 426 (677)
.++..|++||.++++..+... +. +. .....+. . +
T Consensus 528 ~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (1560)
T PTZ00243 528 LQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCC 607 (1560)
T ss_pred HHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence 999999999999995322100 00 00 0000000 0 0
Q ss_pred ---cccCCCCCccEEEEeeeEEeCC--------------------------------------CCCccccceeeEEeCCc
Q psy845 427 ---KLADWPRQGTIKFKNVSLRYRD--------------------------------------NWPLVLANVSFRINHGE 465 (677)
Q Consensus 427 ---~~~~~~~~g~I~fknVsFsY~~--------------------------------------~~~~VLknISl~I~~GE 465 (677)
.+......+.+.++|++|+++. +++++|+|+||++++||
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~ 687 (1560)
T PTZ00243 608 EQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGK 687 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCC
Confidence 0000011245778888776431 12458999999999999
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~ 545 (677)
+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 688 ~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----------------------------------------------- 720 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----------------------------------------------- 720 (1560)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----------------------------------------------
Confidence 999999999999999999999999999998642
Q ss_pred hhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC
Q psy845 546 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV 625 (677)
Q Consensus 546 ~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v 625 (677)
++|+||||+|.+|++|++|||.++...++++..++++.+++++.++.+|+|++|.+
T Consensus 721 ------------------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 721 ------------------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred ------------------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 35899999999999999999987665566678889999999999999999999988
Q ss_pred --CCCCCChHHHHHHHHHHHHhccchhh------------------------cccccc-e-----ecccccccEEEEEeC
Q psy845 626 --QGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVN-I-----TRPVTSCDKVLVMDN 673 (677)
Q Consensus 626 --~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~T-I-----LsTI~~aDrIlVLd~ 673 (677)
+|.+||||||||++||||++++|+++ ..+++| | ++.+..||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 79999999999999999999999876 124566 2 334567999999999
Q ss_pred CeeC
Q psy845 674 GQAL 677 (677)
Q Consensus 674 GrIV 677 (677)
|+++
T Consensus 857 G~i~ 860 (1560)
T PTZ00243 857 GRVE 860 (1560)
T ss_pred CEEE
Confidence 9973
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=347.94 Aligned_cols=184 Identities=38% Similarity=0.682 Sum_probs=167.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++.++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~--------- 70 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV--------- 70 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC---------
Confidence 4699999999997554579999999999999999999999999999999999998 789999999999877
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+..++|++++||||++.+|++|++||+++++
T Consensus 71 -------------------------------------------------~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~ 101 (275)
T cd03289 71 -------------------------------------------------PLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG 101 (275)
T ss_pred -------------------------------------------------CHHHHhhhEEEECCCcccchhhHHHHhhhcc
Confidence 7788999999999999999999999998766
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..++++++++++.+++.+++.++|+++||.+ +|.+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l 181 (275)
T cd03289 102 KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL 181 (275)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 6788999999999999999999999999999 89999999999999999999999976
Q ss_pred --cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
...++|| +++++.||||+||++|+++
T Consensus 182 ~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~ 215 (275)
T cd03289 182 KQAFADCTVILSEHRIEAMLECQRFLVIEENKVR 215 (275)
T ss_pred HHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEe
Confidence 1245673 4466789999999999985
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=331.44 Aligned_cols=185 Identities=23% Similarity=0.345 Sum_probs=150.9
Q ss_pred CCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEeccc
Q psy845 430 DWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIAS 504 (677)
Q Consensus 430 ~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~ 504 (677)
+|+..+.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++++
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 466678899999999997544579999999999999999999999999999999999997 579999999999864
Q ss_pred ccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc
Q psy845 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 505 l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg 584 (677)
.+ .+...+|+.++||||+|.+|++
T Consensus 154 ~~--------------------------------------------------------~~~~~lr~~i~~v~q~~~~~~~ 177 (329)
T PRK14257 154 KK--------------------------------------------------------ISSLELRTRIGMVFQKPTPFEM 177 (329)
T ss_pred cc--------------------------------------------------------cchHhhhccEEEEecCCccCCC
Confidence 20 0556789999999999999999
Q ss_pred chhhccccCC---CCChHH-----HHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 585 TIRYNLDPFG---RCHDTE-----LWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 585 TIrENI~~~~---~~sdee-----I~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
|++||++++. ..++++ ..++++.+++++. +++.+ +|.+||||||||+|||||++++|+++
T Consensus 178 ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLD 250 (329)
T PRK14257 178 SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE-------VKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD 250 (329)
T ss_pred cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcch-------hhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 9999998532 234444 3556777776543 33444 79999999999999999999999977
Q ss_pred --------------------cccccce------eccccc-ccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVNI------TRPVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~TI------LsTI~~-aDrIlVLd~GrIV 677 (677)
..+++|| ++++.+ ||||+||++|+++
T Consensus 251 EPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~ 303 (329)
T PRK14257 251 EPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIE 303 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1345673 345666 9999999999984
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=305.82 Aligned_cols=185 Identities=59% Similarity=0.939 Sum_probs=162.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|.++++|++++|++...++++|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--------- 71 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI--------- 71 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhC---------
Confidence 46899999999975444699999999999999999999999999999999999999999999999988766
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+...+|++++|++|++.+|++|++||+.+..
T Consensus 72 -------------------------------------------------~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~ 102 (221)
T cd03244 72 -------------------------------------------------GLHDLRSRISIIPQDPVLFSGTIRSNLDPFG 102 (221)
T ss_pred -------------------------------------------------CHHHHhhhEEEECCCCccccchHHHHhCcCC
Confidence 5667788999999999999999999998765
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..+.+++.++++..++.+++.++|.|+++.. .+.+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 182 (221)
T cd03244 103 EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182 (221)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 6677889999999999999999999999987 68899999999999999999999976
Q ss_pred --cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..++.|| ...+..||+|++|++|+++
T Consensus 183 ~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (221)
T cd03244 183 REAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVV 216 (221)
T ss_pred HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEE
Confidence 1134552 2235679999999999974
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=343.36 Aligned_cols=232 Identities=22% Similarity=0.380 Sum_probs=181.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHH-hhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~-~~~~i 514 (677)
-|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999986654333 36789
Q ss_pred ccccCCccccc---------------------------------------------------------------------
Q psy845 515 SVIPQDPVLFN--------------------------------------------------------------------- 525 (677)
Q Consensus 515 ~~v~q~~~lf~--------------------------------------------------------------------- 525 (677)
+|+||++.+++
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999853221
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 241 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRK 241 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHHHHHHHhcCCC
Confidence
Q ss_pred ----------------------------------------cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH
Q psy845 526 ----------------------------------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 526 ----------------------------------------~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 565 (677)
+.+|.||||||||+++|.|+.+|++|+|+++|.+++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 242 LEDQYPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred ccccccccccCCCCcEEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 7789999999999999999999999999999999876543
Q ss_pred -HHHhhhcccccccc---ccc-ccchhhccccCC-----C----CC----hHHHHHHHHHccchhhHhhhhcccCCCCCC
Q psy845 566 -ETLRSRLSVIPQDP---VLF-NGTIRYNLDPFG-----R----CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQG 627 (677)
Q Consensus 566 -~~LR~~I~~V~Qd~---~LF-sgTIrENI~~~~-----~----~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G 627 (677)
+.+|++++||||++ .+| +.|++||+.+.. . .+ ++++.++++..++.+ +..+. ..
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~--~~ 393 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSMEQ--AI 393 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCccC--ch
Confidence 45778899999997 354 579999996421 0 11 122344444444310 01122 46
Q ss_pred CCCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-ccccEEEEEeCCee
Q psy845 628 DQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCDKVLVMDNGQA 676 (677)
Q Consensus 628 ~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aDrIlVLd~GrI 676 (677)
.+||||||||++||||++++|+++ ..+++|+ .|. + +.||||++|++|++
T Consensus 394 ~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 473 (501)
T PRK10762 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473 (501)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEE
Confidence 799999999999999999999976 1235562 332 2 34999999999997
Q ss_pred C
Q psy845 677 L 677 (677)
Q Consensus 677 V 677 (677)
+
T Consensus 474 ~ 474 (501)
T PRK10762 474 S 474 (501)
T ss_pred E
Confidence 4
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=300.88 Aligned_cols=379 Identities=21% Similarity=0.256 Sum_probs=254.8
Q ss_pred hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Q psy845 211 LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290 (677)
Q Consensus 211 ~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~ 290 (677)
+.+|+|++.|+ +....++.+.+..+..+++...+++.||.+.++.++.+.+..+.....+.+..+..+..++...++.
T Consensus 109 a~L~~Dvr~IS--f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq 186 (546)
T COG4615 109 AGLTSDVRNIS--FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQ 186 (546)
T ss_pred hhhccccccee--ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 55677777777 5667889999999999999999999999876666655555555444444444444444445557788
Q ss_pred HHHHHHHchHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHh-c
Q psy845 291 SNVSSTVSGLHIIHVFHKEQD--FVRRFCEQYDENSTTLFLCS----MAMRWLAVRIDVLAVIAMAIITGL--TVAFH-G 361 (677)
Q Consensus 291 s~~~E~l~Gi~tIkaf~~e~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~l~~~l~~g~--~lv~~-G 361 (677)
++.+..++|.++.+..+.-++ ..+.+....+...+...+.. ....|.+ +.+...+|. |+..+ +
T Consensus 187 ~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~n--------i~l~~lIGlvf~lal~~~ 258 (546)
T COG4615 187 NDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSN--------IMLLGLIGLVFWLALSLG 258 (546)
T ss_pred HHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhc
Confidence 999999999999998764433 22333222222222110000 1111211 111111221 12211 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEe
Q psy845 362 SVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKN 441 (677)
Q Consensus 362 ~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fkn 441 (677)
--+...+..+......+-+|+.+.+..+..+..+.+|.+||.++..+++++ ..+. +...|.-.++|++|
T Consensus 259 w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a-~~~~----------~q~~p~~~~lelrn 327 (546)
T COG4615 259 WASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA-DFPR----------PQAFPDWKTLELRN 327 (546)
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc-cCCC----------CCcCCcccceeeee
Confidence 112222333444445667899999999999999999999999886322111 1111 11122234799999
Q ss_pred eeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCc
Q psy845 442 VSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 442 VsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
|.|+|++.. .-+..||++|++||.|-|+|.+||||||++++|.|+|.|++|+|++||.++..-
T Consensus 328 vrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e---------------- 390 (546)
T COG4615 328 VRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAE---------------- 390 (546)
T ss_pred eeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCC----------------
Confidence 999998763 568999999999999999999999999999999999999999999999998665
Q ss_pred cccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHH
Q psy845 522 VLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTEL 601 (677)
Q Consensus 522 ~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI 601 (677)
+++++|+.++-|+-|.+||+.++. +-+.++.+.+
T Consensus 391 ------------------------------------------~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i 424 (546)
T COG4615 391 ------------------------------------------QLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLI 424 (546)
T ss_pred ------------------------------------------CHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHH
Confidence 888999999999999999987751 1112566656
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------------ccccc
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------------KKSGV 656 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------------~~~~~ 656 (677)
..-++...+..... +.+| ...-..||-|||.|+|+--|++-+.+|+ +..||
T Consensus 425 ~~~LqrLel~~kts-l~d~---~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK 500 (546)
T COG4615 425 EKWLQRLELAHKTS-LNDG---RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK 500 (546)
T ss_pred HHHHHHHHHhhhhc-ccCC---cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence 55555444433221 1111 1123589999999999999999988876 34789
Q ss_pred ce---ec---ccccccEEEEEeCCeeC
Q psy845 657 NI---TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 657 TI---Ls---TI~~aDrIlVLd~GrIV 677 (677)
|| .| -..+|||++.|++|+++
T Consensus 501 TI~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 501 TIFAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred eEEEEecCchhhhhHHHHHHHhcCcee
Confidence 95 22 24569999999999985
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=309.15 Aligned_cols=187 Identities=44% Similarity=0.762 Sum_probs=163.4
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
..|.|+++|++++|++....+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~------- 88 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKL------- 88 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhC-------
Confidence 4678999999999976434699999999999999999999999999999999999999999999999988776
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+...+|+.++|++|++.+|++|++||+.+
T Consensus 89 ---------------------------------------------------~~~~~~~~i~~v~q~~~l~~~tv~~nl~~ 117 (257)
T cd03288 89 ---------------------------------------------------PLHTLRSRLSIILQDPILFSGSIRFNLDP 117 (257)
T ss_pred ---------------------------------------------------CHHHHhhhEEEECCCCcccccHHHHhcCc
Confidence 66678899999999999999999999976
Q ss_pred CCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 593 FGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 593 ~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
.....+++++++++..++.+.+..+|.|+++.+ .+.+||||||||++||||++++|+++
T Consensus 118 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~ 197 (257)
T cd03288 118 ECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197 (257)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 433445678889999999999999999999988 68899999999999999999999976
Q ss_pred ----cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ++.+..||||++|++|+++
T Consensus 198 ~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~ 233 (257)
T cd03288 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILV 233 (257)
T ss_pred HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEE
Confidence 1235562 2345569999999999984
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=340.30 Aligned_cols=232 Identities=22% Similarity=0.363 Sum_probs=181.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHH-hhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~-~~~~i 514 (677)
-++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..+ .++++
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 48999999999753 5999999999999999999999999999999999999999999999999998766544 35679
Q ss_pred ccccCCcccc-------------------------c--------------------------------------------
Q psy845 515 SVIPQDPVLF-------------------------N-------------------------------------------- 525 (677)
Q Consensus 515 ~~v~q~~~lf-------------------------~-------------------------------------------- 525 (677)
+|+||++.++ +
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 9999985310 0
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 242 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMV 242 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHHHHHHHhc
Confidence
Q ss_pred --------------------------------------------------cccccCCCCCchhHHHHHHhhhhccccccc
Q psy845 526 --------------------------------------------------GIVGRTGAGKSSLLVALFRLVELSSGQIKI 555 (677)
Q Consensus 526 --------------------------------------------------~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~ 555 (677)
+.+|.||||||||+++|.|+.+|++|+|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 322 (510)
T PRK09700 243 GRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322 (510)
T ss_pred CCCccccccccccccccCCCCcEEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE
Confidence 777899999999999999999999999999
Q ss_pred cccchhhhh-HHHHhhhcccccccc---cccc-cchhhccccCCCC------------Ch----HHHHHHHHHccchhhH
Q psy845 556 DDFDIASVE-LETLRSRLSVIPQDP---VLFN-GTIRYNLDPFGRC------------HD----TELWDALEKSHLKSKV 614 (677)
Q Consensus 556 ~~~~~~~~~-~~~LR~~I~~V~Qd~---~LFs-gTIrENI~~~~~~------------sd----eeI~~Al~~a~l~efI 614 (677)
+|.++...+ .+.+|++++||||++ .+|. .|++||+.+.... +. +++.++++..++..
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 400 (510)
T PRK09700 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-- 400 (510)
T ss_pred CCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC--
Confidence 999886543 356788999999984 5664 5999999643110 11 12334444444320
Q ss_pred hhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce---eccc----c
Q psy845 615 VTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRPV----T 663 (677)
Q Consensus 615 ~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsTI----~ 663 (677)
+..+. ...+||||||||++||||++++|+++ ..++.|| .|.. +
T Consensus 401 ----~~~~~--~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~ 474 (510)
T PRK09700 401 ----HSVNQ--NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIIT 474 (510)
T ss_pred ----CCccC--ccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHh
Confidence 11222 45789999999999999999999976 1235663 3322 3
Q ss_pred cccEEEEEeCCeeC
Q psy845 664 SCDKVLVMDNGQAL 677 (677)
Q Consensus 664 ~aDrIlVLd~GrIV 677 (677)
.||||++|++|+++
T Consensus 475 ~~d~i~~l~~G~i~ 488 (510)
T PRK09700 475 VCDRIAVFCEGRLT 488 (510)
T ss_pred hCCEEEEEECCEEE
Confidence 49999999999974
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=315.19 Aligned_cols=177 Identities=34% Similarity=0.437 Sum_probs=147.2
Q ss_pred EEEEeeeEEeCCC---CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~---~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
|+++|||+.|+.+ ...+|+||||+|++||+.||||+||||||||++++.++-+|++|+|.+||.|+..++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~----- 76 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEA----- 76 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChH-----
Confidence 7899999999862 24689999999999999999999999999999999999999999999999999888321
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~ 592 (677)
++..+|++||+|+|++.|++ .|+.||+++
T Consensus 77 --------------------------------------------------~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~ 106 (339)
T COG1135 77 --------------------------------------------------ELRQLRQKIGMIFQHFNLLSSRTVFENVAF 106 (339)
T ss_pred --------------------------------------------------HHHHHHhhccEEeccccccccchHHhhhhh
Confidence 78889999999999999996 899999974
Q ss_pred C---CCCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------
Q psy845 593 F---GRCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------- 652 (677)
Q Consensus 593 ~---~~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------- 652 (677)
- ...+.+| +.+.++.+|+.|+..+ ..++||||||||++|||||..+|+++.
T Consensus 107 PLeiag~~k~ei~~RV~elLelVgL~dk~~~---------yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT 177 (339)
T COG1135 107 PLELAGVPKAEIKQRVAELLELVGLSDKADR---------YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177 (339)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHcCChhhhcc---------CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHH
Confidence 2 1233443 5667888888877655 357999999999999999999999882
Q ss_pred ------------ccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 653 ------------KSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.-|.|| .|. ++ -|||+.||++|+++
T Consensus 178 ~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lv 221 (339)
T COG1135 178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV 221 (339)
T ss_pred HHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEE
Confidence 123442 232 33 39999999999985
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=336.44 Aligned_cols=232 Identities=24% Similarity=0.353 Sum_probs=181.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH-HHhhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~-~~~~~~i 514 (677)
-++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. +..++++
T Consensus 4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 48999999999753 59999999999999999999999999999999999999999999999999865433 3467889
Q ss_pred ccccCCccccc---------------------------------------------------------------------
Q psy845 515 SVIPQDPVLFN--------------------------------------------------------------------- 525 (677)
Q Consensus 515 ~~v~q~~~lf~--------------------------------------------------------------------- 525 (677)
||+||++.+++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV 161 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999864321
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 241 (501)
T PRK11288 162 IAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGRE 241 (501)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCCHHHHHHHhcCCC
Confidence
Q ss_pred -----------------------------------------cccccCCCCCchhHHHHHHhhhhccccccccccchhhh-
Q psy845 526 -----------------------------------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV- 563 (677)
Q Consensus 526 -----------------------------------------~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~- 563 (677)
+.+|.||||||||+++|.|+.+|++|+|+++|.++...
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~ 321 (501)
T PRK11288 242 IGDIYGYRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS 321 (501)
T ss_pred ccccccccccCCCCcEEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCC
Confidence 55689999999999999999999999999999988654
Q ss_pred hHHHHhhhccccccccc---cc-ccchhhccccCCC-C--------Ch----HHHHHHHHHccchhhHhhhhcccCCCCC
Q psy845 564 ELETLRSRLSVIPQDPV---LF-NGTIRYNLDPFGR-C--------HD----TELWDALEKSHLKSKVVTMRSKLDSDVQ 626 (677)
Q Consensus 564 ~~~~LR~~I~~V~Qd~~---LF-sgTIrENI~~~~~-~--------sd----eeI~~Al~~a~l~efI~~LP~GldT~v~ 626 (677)
+.+..|++++|+||++. +| +.|+.||+..... . .. +++.++++..++.+ +-.++ .
T Consensus 322 ~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~--~ 393 (501)
T PRK11288 322 PRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT------PSREQ--L 393 (501)
T ss_pred HHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc------CCccC--c
Confidence 34567889999999973 55 5899999864311 0 11 12333444443310 11122 4
Q ss_pred CCCCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-ccccEEEEEeCCe
Q psy845 627 GDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCDKVLVMDNGQ 675 (677)
Q Consensus 627 G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aDrIlVLd~Gr 675 (677)
..+||||||||++||||++.+|+++ ...+.|| .|. + +-||||++|++|+
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 6799999999999999999999976 1235563 222 2 3499999999999
Q ss_pred eC
Q psy845 676 AL 677 (677)
Q Consensus 676 IV 677 (677)
++
T Consensus 474 i~ 475 (501)
T PRK11288 474 IA 475 (501)
T ss_pred EE
Confidence 74
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=335.59 Aligned_cols=233 Identities=33% Similarity=0.481 Sum_probs=189.1
Q ss_pred cEEEEeeeEEeCCCCC--ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC----ccEEEECCEecccccHHH
Q psy845 436 TIKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS----SGQIKIDDFDIASVELET 509 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~--~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~----~G~I~IdG~dI~~l~~~~ 509 (677)
-++++|++..|..... .+++||||++++||.+||||+|||||||+++.|.|+.++. +|+|.+||.|+..++.++
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975432 5999999999999999999999999999999999999988 899999999998887654
Q ss_pred h----hhhcccccCCcc-ccc-----------------------------------------------------------
Q psy845 510 L----RSRLSVIPQDPV-LFN----------------------------------------------------------- 525 (677)
Q Consensus 510 ~----~~~i~~v~q~~~-lf~----------------------------------------------------------- 525 (677)
. .++|++|||+|. .+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~ 164 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVM 164 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHH
Confidence 3 588999999987 455
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 165 IAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence
Q ss_pred ----------------------------------------------------------------------------cccc
Q psy845 526 ----------------------------------------------------------------------------GIVG 529 (677)
Q Consensus 526 ----------------------------------------------------------------------------~~~~ 529 (677)
|.||
T Consensus 245 ~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVG 324 (539)
T COG1123 245 NPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVG 324 (539)
T ss_pred ccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEEC
Confidence 7789
Q ss_pred cCCCCCchhHHHHHHhhhhccccccccccc--hhhhhHHHHhhhccccccccccc---ccchhhccc-c---CCCC----
Q psy845 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFD--IASVELETLRSRLSVIPQDPVLF---NGTIRYNLD-P---FGRC---- 596 (677)
Q Consensus 530 ~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~~~~~LR~~I~~V~Qd~~LF---sgTIrENI~-~---~~~~---- 596 (677)
++|||||||+++|+||.+|++|+|.++|.| .+.-+....|+++-+|+|||+=. ..||+++|. + .+..
T Consensus 325 eSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~ 404 (539)
T COG1123 325 ESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAE 404 (539)
T ss_pred CCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHH
Confidence 999999999999999999999999999988 23334667889999999999864 579999984 1 1111
Q ss_pred ChHHHHHHHHHccchh-hHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-----------------------
Q psy845 597 HDTELWDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK----------------------- 652 (677)
Q Consensus 597 sdeeI~~Al~~a~l~e-fI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~----------------------- 652 (677)
..+.+.+.++.+++.+ +..+ ...+||||||||+||||||..+|+++.
T Consensus 405 ~~~rv~~ll~~VgL~~~~l~r---------yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l 475 (539)
T COG1123 405 RRARVAELLELVGLPPEFLDR---------YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475 (539)
T ss_pred HHHHHHHHHHHcCCCHHHHhc---------CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 1234666788888763 2222 567999999999999999999999771
Q ss_pred --ccccc---eec---ccc-cccEEEEEeCCeeC
Q psy845 653 --KSGVN---ITR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 653 --~~~~T---ILs---TI~-~aDrIlVLd~GrIV 677 (677)
.-|.| |.| .++ -||||+||++|+||
T Consensus 476 q~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 476 QEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred HHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 12334 222 333 39999999999986
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=301.98 Aligned_cols=183 Identities=32% Similarity=0.522 Sum_probs=157.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|+++.+++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA----------- 69 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc-----------
Confidence 478999999975445699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-C
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-R 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~ 595 (677)
+.+.+|+.++|+||++.+|+.|++||+.+.. .
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 102 (237)
T cd03252 70 -----------------------------------------------DPAWLRRQVGVVLQENVLFNRSIRDNIALADPG 102 (237)
T ss_pred -----------------------------------------------CHHHHhhcEEEEcCCchhccchHHHHhhccCCC
Confidence 5566788999999999999999999997643 2
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK---------------------- 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL---------------------- 651 (677)
.+.+++.++++..++.++++.+|.|+++.. .+.+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 182 (237)
T cd03252 103 MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMH 182 (237)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 345667788888999999999999999876 68899999999999999999999876
Q ss_pred -cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ...+..||+|++|++|+++
T Consensus 183 ~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 215 (237)
T cd03252 183 DICAGRTVIIIAHRLSTVKNADRIIVMEKGRIV 215 (237)
T ss_pred HhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 1235663 2234569999999999974
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=298.19 Aligned_cols=174 Identities=33% Similarity=0.463 Sum_probs=142.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+.+|++. .||+|||+++++||+++|+||||||||||+++|.++-+|++|+|.+||.++..-.
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~--------- 70 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK--------- 70 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh---------
Confidence 38999999999864 6999999999999999999999999999999999999999999999998874430
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+...+|+++|+|+|...|| +.|+-||+....
T Consensus 71 ------------------------------------------------~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 71 ------------------------------------------------DILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred ------------------------------------------------hHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 5678899999999999999 689999996432
Q ss_pred ----CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 ----RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 ----~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
..+.+| -.+.++++|+.+.....| .+|||||+||+||||||.-+|+++
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP---------~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~ 173 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYP---------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVG 173 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc---------cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHH
Confidence 233333 344677888887766644 689999999999999999999876
Q ss_pred ---------cccccc-e--eccc----ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVN-I--TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~T-I--LsTI----~~aDrIlVLd~GrIV 677 (677)
+.+|.| | +|.. +-||||+.||+|+|+
T Consensus 174 EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~ii 215 (240)
T COG1126 174 EVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII 215 (240)
T ss_pred HHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEE
Confidence 235666 2 4432 238999999999874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=335.40 Aligned_cols=232 Identities=26% Similarity=0.412 Sum_probs=180.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC--CccEEEECCEecccccHHH-hhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELET-LRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G~I~IdG~dI~~l~~~~-~~~ 512 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+|+|+|+++| ++|+|.+||.++...+..+ .++
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999964 3699999999999999999999999999999999999996 8999999999997765443 467
Q ss_pred hcccccCCccccc-------------------------------------------------------------------
Q psy845 513 RLSVIPQDPVLFN------------------------------------------------------------------- 525 (677)
Q Consensus 513 ~i~~v~q~~~lf~------------------------------------------------------------------- 525 (677)
++||+||++.+++
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 8999999864321
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 242 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDDIITMMVGR 242 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHHHHHHHhhCc
Confidence
Q ss_pred -------------------------------------------------cccccCCCCCchhHHHHHHhhh-hccccccc
Q psy845 526 -------------------------------------------------GIVGRTGAGKSSLLVALFRLVE-LSSGQIKI 555 (677)
Q Consensus 526 -------------------------------------------------~~~~~n~~~~~~~~~~~~~~~~-~~~g~i~~ 555 (677)
+.+|.||||||||+++|.|+.+ |++|+|++
T Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~ 322 (506)
T PRK13549 243 ELTALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI 322 (506)
T ss_pred CccccccccccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEE
Confidence 6779999999999999999998 59999999
Q ss_pred cccchhhhh-HHHHhhhcccccccc---ccc-ccchhhccccCC--CC------Ch----HHHHHHHHHccchhhHhhhh
Q psy845 556 DDFDIASVE-LETLRSRLSVIPQDP---VLF-NGTIRYNLDPFG--RC------HD----TELWDALEKSHLKSKVVTMR 618 (677)
Q Consensus 556 ~~~~~~~~~-~~~LR~~I~~V~Qd~---~LF-sgTIrENI~~~~--~~------sd----eeI~~Al~~a~l~efI~~LP 618 (677)
+|.+++..+ .+..|+.++||+|++ .+| +.|+.||+.+.. .. +. +++.++++..++.+
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 396 (506)
T PRK13549 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------ 396 (506)
T ss_pred CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------
Confidence 999886543 345678899999996 355 569999996421 11 11 12333444443320
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-ccccE
Q psy845 619 SKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCDK 667 (677)
Q Consensus 619 ~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aDr 667 (677)
+..+. ...+||||||||++||||++++|+++ ..+++|| .|. + +.|||
T Consensus 397 ~~~~~--~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 397 ASPEL--AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred CCccc--ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 01111 46799999999999999999999976 1235663 222 3 34999
Q ss_pred EEEEeCCeeC
Q psy845 668 VLVMDNGQAL 677 (677)
Q Consensus 668 IlVLd~GrIV 677 (677)
+++|++|+++
T Consensus 475 v~~l~~G~i~ 484 (506)
T PRK13549 475 VLVMHEGKLK 484 (506)
T ss_pred EEEEECCEEE
Confidence 9999999974
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=332.60 Aligned_cols=232 Identities=24% Similarity=0.398 Sum_probs=181.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHh-hhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~-~~~i 514 (677)
-++++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..+. ++++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999975 359999999999999999999999999999999999999999999999999987665554 3579
Q ss_pred ccccCCccccc---------------------------------------------------------------------
Q psy845 515 SVIPQDPVLFN--------------------------------------------------------------------- 525 (677)
Q Consensus 515 ~~v~q~~~lf~--------------------------------------------------------------------- 525 (677)
||+||++.+++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 99999986553
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (510)
T PRK15439 169 ASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQAITPAAREKSLSAS 248 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHHHHHHHhCcccccccccc
Confidence
Q ss_pred --------------------------------------------cccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 526 --------------------------------------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 526 --------------------------------------------~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~ 328 (510)
T PRK15439 249 QKLWLELPGNRRQQAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEIN 328 (510)
T ss_pred ccccccccccccccCCCCceEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECC
Confidence 566789999999999999999999999999999987
Q ss_pred hhhHHH-Hhhhcccccccc---cccc-cchhhccccC--C--C--C-Ch---HHHHHHHHHccchhhHhhhhcccCCCCC
Q psy845 562 SVELET-LRSRLSVIPQDP---VLFN-GTIRYNLDPF--G--R--C-HD---TELWDALEKSHLKSKVVTMRSKLDSDVQ 626 (677)
Q Consensus 562 ~~~~~~-LR~~I~~V~Qd~---~LFs-gTIrENI~~~--~--~--~-sd---eeI~~Al~~a~l~efI~~LP~GldT~v~ 626 (677)
..+... .|++++|+||++ .+|. .|+.||+... . . . .. +++.++++..++. ++..+. .
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~--~ 400 (510)
T PRK15439 329 ALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAEQ--A 400 (510)
T ss_pred CCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCccC--c
Confidence 665443 567899999986 3664 5999998421 0 0 0 11 1233344444332 011222 4
Q ss_pred CCCCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-ccccEEEEEeCCe
Q psy845 627 GDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCDKVLVMDNGQ 675 (677)
Q Consensus 627 G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aDrIlVLd~Gr 675 (677)
..+||||||||++||||++.+|+++ ..++.|| .|. + +-||||++|++|+
T Consensus 401 ~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480 (510)
T ss_pred cccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6799999999999999999999976 1135663 222 3 3499999999999
Q ss_pred eC
Q psy845 676 AL 677 (677)
Q Consensus 676 IV 677 (677)
++
T Consensus 481 i~ 482 (510)
T PRK15439 481 IS 482 (510)
T ss_pred EE
Confidence 74
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=295.92 Aligned_cols=184 Identities=36% Similarity=0.600 Sum_probs=158.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++++|++++|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--------- 70 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDI--------- 70 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHc---------
Confidence 368999999999743 3599999999999999999999999999999999999999999999999988665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+.+.+|+.++|++|++.+|++|++||+.+..
T Consensus 71 -------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~ 101 (229)
T cd03254 71 -------------------------------------------------SRKSLRSMIGVVLQDTFLFSGTIMENIRLGR 101 (229)
T ss_pred -------------------------------------------------CHHHHhhhEEEecCCchhhhhHHHHHHhccC
Confidence 5567888999999999999999999997653
Q ss_pred -CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 595 -RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 595 -~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
...++++.++++..++.++++++|.|+++.. ...+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 181 (229)
T cd03254 102 PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA 181 (229)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 3345678888899999999999999999877 67899999999999999999999976
Q ss_pred ---cccccce---e---cccccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+++|| . ..+..||+|++|++|+++
T Consensus 182 l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (229)
T cd03254 182 LEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKII 216 (229)
T ss_pred HHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEE
Confidence 1235563 2 234569999999999973
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=315.26 Aligned_cols=171 Identities=30% Similarity=0.394 Sum_probs=140.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++.. +++|+|++|++||.++++|||||||||++++|+|+.+|++|+|.+||.|+++++++
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~------- 73 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE------- 73 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-------
Confidence 589999999998642 99999999999999999999999999999999999999999999999999998433
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+++||+|+|+.-|| +.|++|||.++-
T Consensus 74 -----------------------------------------------------~R~iamVFQ~yALyPhmtV~~Niaf~L 100 (338)
T COG3839 74 -----------------------------------------------------KRGIAMVFQNYALYPHMTVYENIAFGL 100 (338)
T ss_pred -----------------------------------------------------HCCEEEEeCCccccCCCcHHHHhhhhh
Confidence 25666666666666 569999998642
Q ss_pred C-------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc---------------
Q psy845 595 R-------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK--------------- 652 (677)
Q Consensus 595 ~-------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~--------------- 652 (677)
+ .-++++.++++..++.+.+++.| .+||||||||+|+||||+|+|+++.
T Consensus 101 k~~~~~k~ei~~rV~eva~~L~l~~lL~r~P---------~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~ 171 (338)
T COG3839 101 KLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP---------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVL 171 (338)
T ss_pred hhCCCchHHHHHHHHHHHHHcCChhHHhcCc---------ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHH
Confidence 1 22456788999999998887754 6899999999999999999999651
Q ss_pred ----------ccccc-e--ecc----cccccEEEEEeCCeeC
Q psy845 653 ----------KSGVN-I--TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----------~~~~T-I--LsT----I~~aDrIlVLd~GrIV 677 (677)
.-+.| | +|. ..-||||.||++|+|.
T Consensus 172 mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~ 213 (338)
T COG3839 172 MRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213 (338)
T ss_pred HHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeee
Confidence 12234 3 332 2349999999999974
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=295.55 Aligned_cols=183 Identities=29% Similarity=0.507 Sum_probs=157.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 69 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDY----------- 69 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhC-----------
Confidence 478999999976434699999999999999999999999999999999999999999999999987665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-C
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-R 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~ 595 (677)
+.+.+|+.++|++|++.+|+.|++||+.++. .
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~ 102 (234)
T cd03251 70 -----------------------------------------------TLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG 102 (234)
T ss_pred -----------------------------------------------CHHHHHhhEEEeCCCCeeccccHHHHhhccCCC
Confidence 5566788999999999999999999998653 3
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK---------------------- 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL---------------------- 651 (677)
...+++.++++..++.++++.+|.|+++.. ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~ 182 (234)
T cd03251 103 ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALE 182 (234)
T ss_pred CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 455677788888999999999999999877 67899999999999999999999976
Q ss_pred -cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ...+..||+|++|++|+++
T Consensus 183 ~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~ 215 (234)
T cd03251 183 RLMKNRTTFVIAHRLSTIENADRIVVLEDGKIV 215 (234)
T ss_pred HhcCCCEEEEEecCHHHHhhCCEEEEecCCeEe
Confidence 1235563 2234569999999999974
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=301.61 Aligned_cols=172 Identities=30% Similarity=0.428 Sum_probs=141.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+|+|||++|.+. .+++|+||+|++||.+.++|||||||||++|++.|+.+|++|+|++||.|++++
T Consensus 2 I~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~----------- 68 (309)
T COG1125 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDL----------- 68 (309)
T ss_pred ceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccC-----------
Confidence 7899999999853 699999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
+..+||++||||-|..-|| +.||.|||..-.
T Consensus 69 -----------------------------------------------d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 69 -----------------------------------------------DPVELRRKIGYVIQQIGLFPHLTVAENIATVPK 101 (309)
T ss_pred -----------------------------------------------CHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence 6666677777777777777 789999996321
Q ss_pred --CCC----hHHHHHHHHHccch--hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 --RCH----DTELWDALEKSHLK--SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~--efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
..+ +++..+.++.+|++ +|..+. ..+|||||+||+.+||||..+|+++
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry---------P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~ 172 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYADRY---------PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC---------chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHH
Confidence 223 34466677888876 355443 4789999999999999999999977
Q ss_pred ----------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..-++|| +|. ++-+|||.||++|+++
T Consensus 173 ~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~ 215 (309)
T COG1125 173 QLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIV 215 (309)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEE
Confidence 1235663 444 4559999999999985
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=289.95 Aligned_cols=185 Identities=35% Similarity=0.509 Sum_probs=157.5
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++++|++++|+++..++++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++.+.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--------- 71 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQL--------- 71 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHC---------
Confidence 35899999999975434699999999999999999999999999999999999999999999999987665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+...+|+.++|++|++.+|..|++||+.+..
T Consensus 72 -------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~ 102 (220)
T cd03245 72 -------------------------------------------------DPADLRRNIGYVPQDVTLFYGTLRDNITLGA 102 (220)
T ss_pred -------------------------------------------------CHHHHHhhEEEeCCCCccccchHHHHhhcCC
Confidence 4455788999999999999899999997643
Q ss_pred -CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 595 -RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 595 -~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
..+.+++.++++..++.+.+.+.|.|++|.+ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 182 (220)
T cd03245 103 PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER 182 (220)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 2345577888999999999999999999988 67899999999999999999999976
Q ss_pred ---cccccce---e---cccccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+++|| . ..++.||+|++|++|+++
T Consensus 183 l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~ 217 (220)
T cd03245 183 LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217 (220)
T ss_pred HHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEe
Confidence 1123452 2 224569999999999974
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=299.77 Aligned_cols=457 Identities=20% Similarity=0.190 Sum_probs=311.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 111 WFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSML-FAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNM 189 (677)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~q~~ 189 (677)
|..+.++++.+++-.--.+|.+.|.++.+....-++ -+++.-..+++..++..+++.++-+.+.+-++-..+++ +
T Consensus 46 ~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~w----L 121 (604)
T COG4178 46 WLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREW----L 121 (604)
T ss_pred HHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 444555555666667778899999999887776544 45566666666777777777777666666555444444 5
Q ss_pred HHHHHHHHhhhcccccc-----------ccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH------
Q psy845 190 WSMLFAFLMICFVFPWF-----------ALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPW------ 252 (677)
Q Consensus 190 ~~~~f~~~~~~~~~~~f-----------~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~------ 252 (677)
|.++..--+..+ ++| |+|..|++-|.....+.-.+.. ..+++++++++...+++.-.+..
T Consensus 122 t~~l~~~wl~~~--~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~-~g~l~s~islisF~~iLw~lsg~~~~~~~ 198 (604)
T COG4178 122 TKDLLDRWLDPR--RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLS-FGLLQSVISLISFTGILWSLSGGLAFTIG 198 (604)
T ss_pred HHHHHHHHhcCC--chHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHccCcceEeec
Confidence 555554444433 222 4577887766666555332333 34677777766666555533221
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHH
Q psy845 253 ---------FALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDEN 323 (677)
Q Consensus 253 ---------lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~ 323 (677)
+...+++-++..-++...+++...++.-..+...+++...+.-.-++.+.|-.++.|+.+.++.++..+..
T Consensus 199 g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v 278 (604)
T COG4178 199 GFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAV 278 (604)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 11112222222223333444544444444444456677777778889999999999999988888877776
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMA---MRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVE 400 (677)
Q Consensus 324 ~~~~~~~~~~---~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~e 400 (677)
.+...+.... ..|++.....++. ++-...+......|.++.|.++.....+..+...+..+...+..+..-.+...
T Consensus 279 ~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~ 357 (604)
T COG4178 279 LGNWRRLVRAQIRLTWFQLGYGWLSV-VLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLL 357 (604)
T ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHH-HHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6544333322 2233333333333 22333344467899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcC--CCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChH
Q psy845 401 RINNCSKKLV--PEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKS 478 (677)
Q Consensus 401 RI~eil~~~~--~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKS 478 (677)
|+.++.+..+ .+++.......+. ... .+. .+..|+++|++..-|++. ..++++|+++++||.+-|.||||||||
T Consensus 358 Rl~~f~~ai~~~~~~~~~~~~~~~~-~~~-~~~-~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKT 433 (604)
T COG4178 358 RLAEFRQALEAAQMDTEKPARTGRR-IDF-DDN-ADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKT 433 (604)
T ss_pred HHHHHHHHHHhccCcccccCccccc-ccc-ccc-ccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHH
Confidence 9998863322 1111000000000 000 011 156899999999988764 689999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccccccccc
Q psy845 479 SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558 (677)
Q Consensus 479 TLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~ 558 (677)
||+|.|+|+++--+|+|..-.
T Consensus 434 sLlRaiaGLWP~g~G~I~~P~----------------------------------------------------------- 454 (604)
T COG4178 434 SLLRALAGLWPWGSGRISMPA----------------------------------------------------------- 454 (604)
T ss_pred HHHHHHhccCccCCCceecCC-----------------------------------------------------------
Confidence 999999999999999875420
Q ss_pred chhhhhHHHHhhhcccccccccccccchhhccccCC---CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHH
Q psy845 559 DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG---RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635 (677)
Q Consensus 559 ~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~---~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQR 635 (677)
-+++-++||.|++-.||+||=+.+-. +.+|+|+.+++.++|+.++++++.+--+ =...||+|||
T Consensus 455 ----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~---W~~vLS~GEq 521 (604)
T COG4178 455 ----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR---WDRVLSGGEQ 521 (604)
T ss_pred ----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc---HhhhcChhHH
Confidence 02356889999999999999997532 3799999999999999999998743222 3568999999
Q ss_pred HHHHHHHHHhccchhh
Q psy845 636 QLLCLARALLRKTKKK 651 (677)
Q Consensus 636 QRIaIARALLr~p~IL 651 (677)
||+|+||.++++|+..
T Consensus 522 QRlafARilL~kP~~v 537 (604)
T COG4178 522 QRLAFARLLLHKPKWV 537 (604)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 9999999999999976
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=293.42 Aligned_cols=182 Identities=38% Similarity=0.617 Sum_probs=157.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++ ..+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~----------- 68 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV----------- 68 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhC-----------
Confidence 4689999999743 3599999999999999999999999999999999999999999999999988776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-C
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-R 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~ 595 (677)
+...+|+.++|++|++.+|++|++||+.++. .
T Consensus 69 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 101 (236)
T cd03253 69 -----------------------------------------------TLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD 101 (236)
T ss_pred -----------------------------------------------CHHHHHhhEEEECCCChhhcchHHHHHhhcCCC
Confidence 5667788999999999999999999997643 3
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK---------------------- 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL---------------------- 651 (677)
.+++++.++++..++.+.+..+|.|+++.+ +..+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~ 181 (236)
T cd03253 102 ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR 181 (236)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 456778888899999999999999999987 67899999999999999999999976
Q ss_pred -cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ...+..||++++|++|+++
T Consensus 182 ~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~ 214 (236)
T cd03253 182 DVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIV 214 (236)
T ss_pred HhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 1125563 2234569999999999974
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=326.06 Aligned_cols=231 Identities=23% Similarity=0.341 Sum_probs=179.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC--CccEEEECCEecccccHHH-hhhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELET-LRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G~I~IdG~dI~~l~~~~-~~~~ 513 (677)
++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+..+ .+++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 689999999964 3599999999999999999999999999999999999987 7999999999998765443 4567
Q ss_pred cccccCCccc----------------------cc----------------------------------------------
Q psy845 514 LSVIPQDPVL----------------------FN---------------------------------------------- 525 (677)
Q Consensus 514 i~~v~q~~~l----------------------f~---------------------------------------------- 525 (677)
+||+||++.+ ++
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 9999998531 10
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 239 (500)
T TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVG 239 (500)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHHHHHHHHhC
Confidence
Q ss_pred --------------------------------------------------cccccCCCCCchhHHHHHHhhhh-cccccc
Q psy845 526 --------------------------------------------------GIVGRTGAGKSSLLVALFRLVEL-SSGQIK 554 (677)
Q Consensus 526 --------------------------------------------------~~~~~n~~~~~~~~~~~~~~~~~-~~g~i~ 554 (677)
+.+|.||||||||+++|.|+.+| ++|+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~ 319 (500)
T TIGR02633 240 REITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF 319 (500)
T ss_pred ccccccccccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 66788999999999999999995 899999
Q ss_pred ccccchhhh-hHHHHhhhcccccccc---ccc-ccchhhccccCC-----C---CCh----HHHHHHHHHccchhhHhhh
Q psy845 555 IDDFDIASV-ELETLRSRLSVIPQDP---VLF-NGTIRYNLDPFG-----R---CHD----TELWDALEKSHLKSKVVTM 617 (677)
Q Consensus 555 ~~~~~~~~~-~~~~LR~~I~~V~Qd~---~LF-sgTIrENI~~~~-----~---~sd----eeI~~Al~~a~l~efI~~L 617 (677)
++|.++... +.+.+|++++||+|++ .+| +.|++||+.+.. . ... +++.++++..++.+.
T Consensus 320 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---- 395 (500)
T TIGR02633 320 INGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA---- 395 (500)
T ss_pred ECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----
Confidence 999998643 3456789999999996 366 469999997531 0 111 123444444443210
Q ss_pred hcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-cccc
Q psy845 618 RSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCD 666 (677)
Q Consensus 618 P~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aD 666 (677)
-.+. ....||||||||++||||++++|+++ ..++.|| .|. + +-||
T Consensus 396 --~~~~--~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d 471 (500)
T TIGR02633 396 --SPFL--PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSD 471 (500)
T ss_pred --CccC--ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 0122 46799999999999999999999976 1235563 232 2 3499
Q ss_pred EEEEEeCCeeC
Q psy845 667 KVLVMDNGQAL 677 (677)
Q Consensus 667 rIlVLd~GrIV 677 (677)
||++|++|+++
T Consensus 472 ~v~~l~~G~i~ 482 (500)
T TIGR02633 472 RVLVIGEGKLK 482 (500)
T ss_pred EEEEEECCEEE
Confidence 99999999974
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=312.90 Aligned_cols=172 Identities=28% Similarity=0.405 Sum_probs=142.7
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++||+.+|++ ..+++|+|++|++||.++++|||||||||++++|+||.+|++|+|.+||.|+.+++++
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~------ 75 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE------ 75 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh------
Confidence 36999999999983 4799999999999999999999999999999999999999999999999999998433
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+++|++|+|+.-|| +.||+||+.++
T Consensus 76 ------------------------------------------------------kR~ig~VFQ~YALFPHltV~~NVafG 101 (352)
T COG3842 76 ------------------------------------------------------KRPIGMVFQSYALFPHMTVEENVAFG 101 (352)
T ss_pred ------------------------------------------------------hcccceeecCcccCCCCcHHHHhhhh
Confidence 45666666666666 78999999865
Q ss_pred CC----CChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 594 GR----CHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 594 ~~----~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
=+ ..++ ++.++++.+++.++-.+. ..+|||||+||+||||||..+|+++
T Consensus 102 Lk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~---------p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR 172 (352)
T COG3842 102 LKVRKKLKKAEIKARVEEALELVGLEGFADRK---------PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLR 172 (352)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC---------hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHH
Confidence 22 2333 578899999999877664 4789999999999999999999876
Q ss_pred -----------cccccc-e--ec----ccccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVN-I--TR----PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~T-I--Ls----TI~~aDrIlVLd~GrIV 677 (677)
...|.| | +| .+.-+|||.||++|+|.
T Consensus 173 ~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 173 EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee
Confidence 123455 3 33 34569999999999984
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=290.00 Aligned_cols=185 Identities=33% Similarity=0.509 Sum_probs=156.1
Q ss_pred CccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 434 QGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.+.++++|++++|+++ ..++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------- 81 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY------- 81 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHc-------
Confidence 5679999999999753 23699999999999999999999999999999999999999999999999887655
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+....|+.++|++|++.+|++|++||+.+
T Consensus 82 ---------------------------------------------------~~~~~~~~i~~~~q~~~l~~~tv~~nl~~ 110 (226)
T cd03248 82 ---------------------------------------------------EHKYLHSKVSLVGQEPVLFARSLQDNIAY 110 (226)
T ss_pred ---------------------------------------------------CHHHHHhhEEEEecccHHHhhhHHHHhcc
Confidence 45567889999999999999999999985
Q ss_pred CC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 593 FG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 593 ~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
.. ....+++.+..+..+++++++.+|.|+++.+ ...+||||||||++||||++++|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 190 (226)
T cd03248 111 GLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190 (226)
T ss_pred ccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 43 2344556666777888999999999998877 68999999999999999999999976
Q ss_pred -----cccccce------ecccccccEEEEEeCCee
Q psy845 652 -----KKSGVNI------TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 652 -----~~~~~TI------LsTI~~aDrIlVLd~GrI 676 (677)
..+++|| .+.+..||+|++|++|++
T Consensus 191 ~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 191 QALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 1234552 223456999999999985
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=291.33 Aligned_cols=183 Identities=36% Similarity=0.557 Sum_probs=155.5
Q ss_pred EEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 437 IKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 437 I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
++++|++++|++. ..++++|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------- 70 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDL---------- 70 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhc----------
Confidence 4689999999753 24699999999999999999999999999999999999999999999999987665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG- 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~- 594 (677)
+....|++++|++|++.+|+.|++||+.++.
T Consensus 71 ------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 102 (238)
T cd03249 71 ------------------------------------------------NLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP 102 (238)
T ss_pred ------------------------------------------------CHHHHHhhEEEECCchhhhhhhHHHHhhccCC
Confidence 4556778899999999999999999997643
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
....+++.+.++..++.+++..+|.|+++.. ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l 182 (238)
T cd03249 103 DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL 182 (238)
T ss_pred CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 3345667778888899999999999999877 67899999999999999999999876
Q ss_pred --cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ++.+..||+|++|++|+++
T Consensus 183 ~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~ 216 (238)
T cd03249 183 DRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVV 216 (238)
T ss_pred HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 1245663 2234569999999999974
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=284.79 Aligned_cols=173 Identities=52% Similarity=0.909 Sum_probs=143.0
Q ss_pred CCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHh
Q psy845 431 WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 431 ~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~ 510 (677)
||..+.++++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----- 75 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI----- 75 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHC-----
Confidence 455678999999999976434699999999999999999999999999999999999999999999999988665
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
+.+++|++++|++|++.+|++|++||+
T Consensus 76 -----------------------------------------------------~~~~~~~~i~~v~q~~~~~~~tv~~~l 102 (207)
T cd03369 76 -----------------------------------------------------PLEDLRSSLTIIPQDPTLFSGTIRSNL 102 (207)
T ss_pred -----------------------------------------------------CHHHHHhhEEEEecCCcccCccHHHHh
Confidence 566778899999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 591 DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 591 ~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
......+++++.++++ ++. +..+|||||+||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~l~--------------~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 166 (207)
T cd03369 103 DPFDEYSDEEIYGALR--------------VSE--GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQK 166 (207)
T ss_pred cccCCCCHHHHHHHhh--------------ccC--CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 7654444555555444 121 56799999999999999999999976
Q ss_pred ----cccccce---e---cccccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+++|+ . ..+..||++++|++|+++
T Consensus 167 ~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~ 202 (207)
T cd03369 167 TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVK 202 (207)
T ss_pred HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 1235562 2 234569999999999974
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=323.08 Aligned_cols=232 Identities=27% Similarity=0.469 Sum_probs=179.2
Q ss_pred cEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHH
Q psy845 436 TIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 436 ~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~ 508 (677)
-++++|++++|+++ ..++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999642 24699999999999999999999999999999999999987 799999999999776543
Q ss_pred H---hh-hhcccccCCcc--ccc---------------------------------------------------------
Q psy845 509 T---LR-SRLSVIPQDPV--LFN--------------------------------------------------------- 525 (677)
Q Consensus 509 ~---~~-~~i~~v~q~~~--lf~--------------------------------------------------------- 525 (677)
+ .+ +++|++||++. +++
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 2 33 57999999963 110
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence
Q ss_pred -----------------------------------------------------------------------cccccCCCC
Q psy845 526 -----------------------------------------------------------------------GIVGRTGAG 534 (677)
Q Consensus 526 -----------------------------------------------------------------------~~~~~n~~~ 534 (677)
+.+|.||||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsG 324 (529)
T PRK15134 245 FSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSG 324 (529)
T ss_pred hhCCCCHHHHHHHHhCccccccccCCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCC
Confidence 122568999
Q ss_pred CchhHHHHHHhhhhccccccccccchhhhhHH---HHhhhcccccccc--cccc-cchhhccccCC-----CCC----hH
Q psy845 535 KSSLLVALFRLVELSSGQIKIDDFDIASVELE---TLRSRLSVIPQDP--VLFN-GTIRYNLDPFG-----RCH----DT 599 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~---~LR~~I~~V~Qd~--~LFs-gTIrENI~~~~-----~~s----de 599 (677)
||||+++|.|+.+ ++|+|+++|.++...+.+ .+|++++||+|++ .+|. .|++||+.+.. ..+ ++
T Consensus 325 KSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 403 (529)
T PRK15134 325 KSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ 403 (529)
T ss_pred HHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHH
Confidence 9999999999995 999999999998765443 3578899999998 3664 69999996421 111 23
Q ss_pred HHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------ccc
Q psy845 600 ELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKS 654 (677)
Q Consensus 600 eI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~ 654 (677)
++.++++..++. +.. +. ...+||||||||++||||++.+|+++ ..+
T Consensus 404 ~~~~~l~~~~l~~~~~-------~~--~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 404 QVIAVMEEVGLDPETR-------HR--YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred HHHHHHHHcCCCHHHH-------hc--CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 345566666653 222 11 45789999999999999999999976 112
Q ss_pred -ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 655 -GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 655 -~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
++|| .|. + ..||||++|++|+++
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 505 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVV 505 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 5673 332 2 249999999999974
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=292.79 Aligned_cols=165 Identities=25% Similarity=0.314 Sum_probs=137.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++||+.+|++ ..||+|+||+|++||.++||||||||||||+|+++|+.+|++|+|.++|.+++.-
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p---------- 70 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP---------- 70 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC----------
Confidence 4789999999986 4699999999999999999999999999999999999999999999999988554
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
...++||+|++.||. .|++||+.++-
T Consensus 71 -----------------------------------------------------~~~~~~vFQ~~~LlPW~Tv~~NV~l~l 97 (248)
T COG1116 71 -----------------------------------------------------GPDIGYVFQEDALLPWLTVLDNVALGL 97 (248)
T ss_pred -----------------------------------------------------CCCEEEEeccCcccchhhHHhhheehh
Confidence 235777778888875 59999996542
Q ss_pred CC-------ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 RC-------HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~~-------sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+. ..+...++++.+|+.+|-...| .+||||||||+|||||++.+|+++
T Consensus 98 ~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P---------~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~ 168 (248)
T COG1116 98 ELRGKSKAEARERAKELLELVGLAGFEDKYP---------HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREE 168 (248)
T ss_pred hccccchHhHHHHHHHHHHHcCCcchhhcCc---------cccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHH
Confidence 21 2345788899999998876654 689999999999999999999987
Q ss_pred ---------cccccc---eeccccc----ccEEEEEeCC
Q psy845 652 ---------KKSGVN---ITRPVTS----CDKVLVMDNG 674 (677)
Q Consensus 652 ---------~~~~~T---ILsTI~~----aDrIlVLd~G 674 (677)
...++| |+|.+.. +|||+||.+|
T Consensus 169 lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 169 LQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 234566 3666654 8999999994
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=321.15 Aligned_cols=230 Identities=21% Similarity=0.237 Sum_probs=178.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. .+|+|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|.++...+..+.++++|+
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 7899999999753 59999999999999999999999999999999999999999999999988876665667788999
Q ss_pred ccCCccc--c---------c------------------------------------------------------------
Q psy845 517 IPQDPVL--F---------N------------------------------------------------------------ 525 (677)
Q Consensus 517 v~q~~~l--f---------~------------------------------------------------------------ 525 (677)
++|++.+ + +
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 9997531 0 0
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 162 Pt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (490)
T PRK10938 162 PFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQALVAQLAHSEQLEGVQ 241 (490)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchhhhhhhhhhccCccc
Confidence
Q ss_pred ------------------------------------------------cccccCCCCCchhHHHHHHhhhh-cccccccc
Q psy845 526 ------------------------------------------------GIVGRTGAGKSSLLVALFRLVEL-SSGQIKID 556 (677)
Q Consensus 526 ------------------------------------------------~~~~~n~~~~~~~~~~~~~~~~~-~~g~i~~~ 556 (677)
+.+|.||||||||+++|.|+.++ ++|+|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~ 321 (490)
T PRK10938 242 LPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLF 321 (490)
T ss_pred cCcccccccccccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEe
Confidence 44578999999999999999876 79999999
Q ss_pred ccchhh-hhHHHHhhhcccccccccccc---cchhhccccC--C------CCC---hHHHHHHHHHccchh-hHhhhhcc
Q psy845 557 DFDIAS-VELETLRSRLSVIPQDPVLFN---GTIRYNLDPF--G------RCH---DTELWDALEKSHLKS-KVVTMRSK 620 (677)
Q Consensus 557 ~~~~~~-~~~~~LR~~I~~V~Qd~~LFs---gTIrENI~~~--~------~~s---deeI~~Al~~a~l~e-fI~~LP~G 620 (677)
|.++.. .+....|++++|++|++.++. .|++||+... . ... ++++.++++..++.+ ..
T Consensus 322 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------ 395 (490)
T PRK10938 322 GRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA------ 395 (490)
T ss_pred cccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc------
Confidence 987643 244567889999999987642 4677776321 1 011 234556666666543 21
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------ccccc-ce---ec---cccc--ccE
Q psy845 621 LDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGV-NI---TR---PVTS--CDK 667 (677)
Q Consensus 621 ldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~-TI---Ls---TI~~--aDr 667 (677)
+. ...+||||||||++||||++++|+++ ..++. || .| .+.. ||+
T Consensus 396 -~~--~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~ 472 (490)
T PRK10938 396 -DA--PFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHR 472 (490)
T ss_pred -cC--chhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhee
Confidence 11 45799999999999999999999976 12333 42 22 3443 799
Q ss_pred EEEEeCCeeC
Q psy845 668 VLVMDNGQAL 677 (677)
Q Consensus 668 IlVLd~GrIV 677 (677)
+++|++|+++
T Consensus 473 v~~l~~G~i~ 482 (490)
T PRK10938 473 LEFVPDGDIY 482 (490)
T ss_pred EEEecCCceE
Confidence 9999999974
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=286.85 Aligned_cols=176 Identities=29% Similarity=0.410 Sum_probs=140.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--------- 72 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRG--------- 72 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcCh---------
Confidence 68999999997543469999999999999999999999999999999999999999999999998866510
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
.+...+|++++|++|++.+|. .|++||+.+..
T Consensus 73 ----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 106 (216)
T TIGR00960 73 ----------------------------------------------REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLR 106 (216)
T ss_pred ----------------------------------------------hHHHHHHHhceEEecCccccccccHHHHHHHHHH
Confidence 023457889999999999886 69999996421
Q ss_pred --C----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --R----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. ..++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 177 (216)
T TIGR00960 107 IIGVPPRDANERVSAALEKVGLEGKAHAL---------PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDI 177 (216)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 1 1234577788888876655443 3589999999999999999999976
Q ss_pred -------cccccce---ec---ccc-cccEEEEEeCCee
Q psy845 652 -------KKSGVNI---TR---PVT-SCDKVLVMDNGQA 676 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI~-~aDrIlVLd~GrI 676 (677)
..+++|| .| .+. .||+|++|++|++
T Consensus 178 ~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 178 MRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 1235663 23 233 4899999999986
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=289.83 Aligned_cols=177 Identities=31% Similarity=0.448 Sum_probs=146.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+.+||++ ..+|+||||+|++||.||||||||||||||++.|.|+.+|++|+|.++|.++......
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k------- 74 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK------- 74 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH-------
Confidence 48999999999865 5699999999999999999999999999999999999999999999999999887211
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC-
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF- 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~- 593 (677)
.++.+|+++|+++|++-|- ..|+.+|+..+
T Consensus 75 ------------------------------------------------~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~gr 106 (258)
T COG3638 75 ------------------------------------------------ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR 106 (258)
T ss_pred ------------------------------------------------HHHHHHHhceeEeccCCcccccHHHHHHHhhh
Confidence 6778888888888888887 56899998322
Q ss_pred -----------CCCChH---HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 594 -----------GRCHDT---ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 594 -----------~~~sde---eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
+-.+.+ +..+|++.+|+.+..-+ +..+|||||+||++|||||.++|+++
T Consensus 107 l~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q---------ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvas 177 (258)
T COG3638 107 LGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ---------RASTLSGGQQQRVAIARALVQQPKIILADEPVAS 177 (258)
T ss_pred cccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH---------HhccCCcchhHHHHHHHHHhcCCCEEecCCcccc
Confidence 222333 35678888988776543 67899999999999999999999976
Q ss_pred -----------------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -----------------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
...|.|+ +|.+ +.||||+-|++|||+
T Consensus 178 LDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 178 LDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred cChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence 2356673 6655 359999999999985
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=294.17 Aligned_cols=173 Identities=30% Similarity=0.442 Sum_probs=143.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++|+|+++ ++|+|+||++++||.++|+||||||||||+|+|+|+..|.+|+|.+||.++.++
T Consensus 2 ~L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~---------- 69 (258)
T COG1120 2 MLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASL---------- 69 (258)
T ss_pred eeEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhc----------
Confidence 37899999999854 799999999999999999999999999999999999999999999999999998
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-cccccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLFNGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~LFsgTIrENI~~~~ 594 (677)
+.+++-+++|||||++ .-|.-|++|=+.+++
T Consensus 70 ------------------------------------------------~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 70 ------------------------------------------------SPKELAKKLAYVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred ------------------------------------------------CHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence 6777777777777774 345668888775432
Q ss_pred -----------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 -----------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 -----------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+.+.+.+.+|++..++.++.++ .-..||||||||+.|||||.++|+++
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r---------~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~ 172 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEHLADR---------PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHHHhcC---------cccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHH
Confidence 1122347889999999988755 34689999999999999999999976
Q ss_pred -------------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+++|| +|. .+.||++++|++|+++
T Consensus 173 ~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~ 218 (258)
T COG1120 173 HQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV 218 (258)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 1346773 443 4569999999999984
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=319.24 Aligned_cols=229 Identities=24% Similarity=0.374 Sum_probs=174.4
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH-HHhhhhcccc
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVI 517 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~-~~~~~~i~~v 517 (677)
++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. +..+++++++
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999975 369999999999999999999999999999999999999999999999999875543 3457789999
Q ss_pred cCCccccc------------------------------------------------------------------------
Q psy845 518 PQDPVLFN------------------------------------------------------------------------ 525 (677)
Q Consensus 518 ~q~~~lf~------------------------------------------------------------------------ 525 (677)
||++.++.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99864321
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQR 238 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHHHHHHHHhCCCcccc
Confidence
Q ss_pred ---------------------------------------cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH-
Q psy845 526 ---------------------------------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL- 565 (677)
Q Consensus 526 ---------------------------------------~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~- 565 (677)
+.+|.||||||||+++|.|+.+|++|+|+++|.+++..+.
T Consensus 239 ~~~~~~~~~~~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 239 FPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNAN 318 (491)
T ss_pred cccccCCCCCcEEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHH
Confidence 7779999999999999999999999999999999877644
Q ss_pred HHHhhhccccccccc---ccc-cchhhcc-----ccCCC----CChHH----HHHHHHHccchhhHhhhhcccCCCCCCC
Q psy845 566 ETLRSRLSVIPQDPV---LFN-GTIRYNL-----DPFGR----CHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGD 628 (677)
Q Consensus 566 ~~LR~~I~~V~Qd~~---LFs-gTIrENI-----~~~~~----~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~ 628 (677)
+.+|+.++|+||++. +|. .|+.+|. ..... .+.++ ..++++..++.+ +..+. ...
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~--~~~ 390 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PGHRT--QIG 390 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CCccc--ccc
Confidence 356788999999963 564 5776663 21111 11111 222333332210 11122 567
Q ss_pred CCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 629 QLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 629 ~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
+||||||||++||||++++|+++ ...++|| .|. + +-|||+++|++|+++
T Consensus 391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999976 1245663 222 2 349999999999974
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=283.10 Aligned_cols=176 Identities=31% Similarity=0.449 Sum_probs=148.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+|+||+.+|+++ +++|+|+||+|++||.+-++|||||||||++|+|++...|++|+|.++|.|+..+..
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~--------- 71 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG--------- 71 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc---------
Confidence 7899999999988 679999999999999999999999999999999999999999999999999988821
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC--
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF-- 593 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~-- 593 (677)
-+..-+|++||+|+||.-|. +.|+.||+++-
T Consensus 72 ----------------------------------------------~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~ 105 (223)
T COG2884 72 ----------------------------------------------REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR 105 (223)
T ss_pred ----------------------------------------------cccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence 15667899999999999887 67999999742
Q ss_pred --C---CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 594 --G---RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 594 --~---~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
+ +.-.+++.++++.+|+.+....+| .+|||||+||+|||||+..+|+++
T Consensus 106 v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP---------~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i 176 (223)
T COG2884 106 VIGKPPREIRRRVSEVLDLVGLKHKARALP---------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI 176 (223)
T ss_pred ccCCCHHHHHHHHHHHHHHhccchhhhcCc---------cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH
Confidence 1 122355788999999999988887 589999999999999999999977
Q ss_pred -------cccccce---ec---cccc-ccEEEEEeCCeeC
Q psy845 652 -------KKSGVNI---TR---PVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI~~-aDrIlVLd~GrIV 677 (677)
...|.|| +| .+.. --|++.+++|+++
T Consensus 177 m~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~ 216 (223)
T COG2884 177 MRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216 (223)
T ss_pred HHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEE
Confidence 2345563 22 2333 4689999999975
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=286.92 Aligned_cols=176 Identities=31% Similarity=0.424 Sum_probs=138.1
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+..|..+. ..+|+|+||+|++||.+||+||||||||||++++.++-.|++|+|.++|.|+..++..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~------ 75 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEK------ 75 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHH------
Confidence 56899999996542 3699999999999999999999999999999999999999999999999999887321
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccc-ccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
....+ |++||+|+|+..|. +.|++||+.+
T Consensus 76 -------------------------------------------------~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 76 -------------------------------------------------ELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred -------------------------------------------------HHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 33444 45688888888887 6799999962
Q ss_pred ----CCCC---ChHHHHHHHHHccchhhHh-hhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 593 ----FGRC---HDTELWDALEKSHLKSKVV-TMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 593 ----~~~~---sdeeI~~Al~~a~l~efI~-~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
.+.. .++...+.++..|+.+... . ...+||||||||+||||||+.+|+++
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~---------~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK---------KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccC---------CchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 2211 1344556666777765443 2 35799999999999999999999976
Q ss_pred ------------cccccce---ec---ccccccEEEEEeCCee
Q psy845 652 ------------KKSGVNI---TR---PVTSCDKVLVMDNGQA 676 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~~aDrIlVLd~GrI 676 (677)
...|+|+ +| ....|||++.|+||++
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 1235562 33 2457999999999984
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=321.11 Aligned_cols=147 Identities=24% Similarity=0.391 Sum_probs=104.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhcccccccc-cc---chhhhh---HHHHhhhcccccccccccc-cchhhccccC-C-C
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID-DF---DIASVE---LETLRSRLSVIPQDPVLFN-GTIRYNLDPF-G-R 595 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~-~~---~~~~~~---~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~-~-~ 595 (677)
+.+|.||||||||+++|.|+.+|++|+|+++ |. ++...+ ...+|++++||||++.+|. .|++||+... . .
T Consensus 314 ~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 393 (520)
T TIGR03269 314 GIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE 393 (520)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC
Confidence 4557799999999999999999999999996 53 333332 2356788999999998886 5999999631 1 1
Q ss_pred C----ChHHHHHHHHHccchhh-HhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 596 C----HDTELWDALEKSHLKSK-VVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 596 ~----sdeeI~~Al~~a~l~ef-I~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
. .++++.++++..++.+. .+. -.+. ...+||||||||++||||++.+|+++
T Consensus 394 ~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~ 468 (520)
T TIGR03269 394 LPDELARMKAVITLKMVGFDEEKAEE---ILDK--YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH 468 (520)
T ss_pred CCHHHHHHHHHHHHHhCCCCCccchh---hhhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 12345556666666421 000 0122 45789999999999999999999976
Q ss_pred -----ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ +.|| .|. + +-||||++|++|+++
T Consensus 469 ~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 469 SILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred HHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5663 332 2 249999999999974
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=279.49 Aligned_cols=168 Identities=26% Similarity=0.397 Sum_probs=144.2
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
++++||+++|++.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 47899999997642 3699999999999999999999999999999999999999999999886
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
+++|++|++.+|++|++||+.+.
T Consensus 67 ---------------------------------------------------------~i~~~~q~~~l~~~t~~enl~~~ 89 (204)
T cd03250 67 ---------------------------------------------------------SIAYVSQEPWIQNGTIRENILFG 89 (204)
T ss_pred ---------------------------------------------------------EEEEEecCchhccCcHHHHhccC
Confidence 25778888888899999999875
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
...++++..++++.+++.+++..+|.|+++.+ .+.+||||||||++||||++++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 169 (204)
T cd03250 90 KPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169 (204)
T ss_pred CCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 55556677888999999999999999999887 67899999999999999999999865
Q ss_pred -----cccccce------ecccccccEEEEEeCCe
Q psy845 652 -----KKSGVNI------TRPVTSCDKVLVMDNGQ 675 (677)
Q Consensus 652 -----~~~~~TI------LsTI~~aDrIlVLd~Gr 675 (677)
..+++|+ .+.++.||+|++|++|+
T Consensus 170 ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 170 CILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 1134563 23445699999999996
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=305.57 Aligned_cols=177 Identities=29% Similarity=0.384 Sum_probs=142.5
Q ss_pred EEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|+++||+++|+++ ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++..
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~------ 75 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNS------ 75 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH------
Confidence 7899999999642 24699999999999999999999999999999999999999999999999998776110
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+...+|++|+||+|++.+| +.|++||+.+.
T Consensus 76 -------------------------------------------------~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~ 106 (343)
T TIGR02314 76 -------------------------------------------------ELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106 (343)
T ss_pred -------------------------------------------------HHHHHhcCEEEEECCccccccCcHHHHHHHH
Confidence 3345688999999999999 47999999642
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++.+++.++..+ ...+||||||||++|||||+.+|+++
T Consensus 107 ~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~---------~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 107 LELDNTPKDEIKRKVTELLALVGLGDKHDS---------YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 1 122 2346678888888766543 35689999999999999999999976
Q ss_pred ---------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+ +-||||++|++|+++
T Consensus 178 ~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv 220 (343)
T TIGR02314 178 SILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 33 23 349999999999984
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=286.87 Aligned_cols=175 Identities=29% Similarity=0.402 Sum_probs=138.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~-------- 70 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA-------- 70 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChh--------
Confidence 468999999974 3599999999999999999999999999999999999999999999999998765100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
+...+|+.++||||++.+|.. |++||+.+..
T Consensus 71 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 103 (235)
T cd03261 71 -----------------------------------------------ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR 103 (235)
T ss_pred -----------------------------------------------hHHHHhcceEEEccCcccCCCCcHHHHHHHHHh
Confidence 235678899999999999875 9999996431
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+. +++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 174 (235)
T cd03261 104 EHTRLSEEEIREIVLEKLEAVGLRGAEDL---------YPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174 (235)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 1222 335566777776554322 34689999999999999999999976
Q ss_pred --------cc-cccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. +. .||||++|++|+++
T Consensus 175 l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~ 216 (235)
T cd03261 175 IDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV 216 (235)
T ss_pred HHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE
Confidence 11 25663 222 33 49999999999974
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=285.62 Aligned_cols=180 Identities=28% Similarity=0.378 Sum_probs=149.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc-----cEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~-----G~I~IdG~dI~~l~~~~ 509 (677)
..++++|+++.|++. .+|+|||++|++++.+|++|||||||||+++.+.|+.|..+ |+|.+||+||.+.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~---- 79 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP---- 79 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC----
Confidence 468999999999753 69999999999999999999999999999999999999887 8999999998664
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
+.+.-++|+++|+|+|.|.-|..||+||
T Consensus 80 ----------------------------------------------------~~d~~~lRr~vGMVFQkPnPFp~SIydN 107 (253)
T COG1117 80 ----------------------------------------------------KVDVVELRRRVGMVFQKPNPFPMSIYDN 107 (253)
T ss_pred ----------------------------------------------------CCCHHHHHHHheeeccCCCCCCchHHHH
Confidence 1278899999999999999999999999
Q ss_pred cccCCC-------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc----------
Q psy845 590 LDPFGR-------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK---------- 652 (677)
Q Consensus 590 I~~~~~-------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~---------- 652 (677)
+.++-+ .-||-++++++.|.+++.+.. .++. .+..|||||+||+||||||.-+|+++.
T Consensus 108 VayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL~~--sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDP 182 (253)
T COG1117 108 VAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RLHK--SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182 (253)
T ss_pred HHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---HhhC--CccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCc
Confidence 987632 123447889999999988754 3443 577899999999999999999999872
Q ss_pred -------------ccccce---eccccc----ccEEEEEeCCeeC
Q psy845 653 -------------KSGVNI---TRPVTS----CDKVLVMDNGQAL 677 (677)
Q Consensus 653 -------------~~~~TI---LsTI~~----aDrIlVLd~GrIV 677 (677)
.++-|| +|..+. +|+...+.+|++|
T Consensus 183 IsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 183 ISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred hhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEE
Confidence 234452 555443 6899999999875
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=284.34 Aligned_cols=176 Identities=31% Similarity=0.438 Sum_probs=139.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC-----CCCccEEEECCEecccccHHHhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV-----ELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y-----~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
|+++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|++ +|++|+|.++|.++.+.+.
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~---- 74 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV---- 74 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch----
Confidence 4789999999754 5999999999999999999999999999999999999 9999999999998866510
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
+...+|++++|++|++.+|+.|++||+.
T Consensus 75 ----------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 102 (227)
T cd03260 75 ----------------------------------------------------DVLELRRRVGMVFQKPNPFPGSIYDNVA 102 (227)
T ss_pred ----------------------------------------------------HHHHHHhhEEEEecCchhccccHHHHHH
Confidence 1456788999999999999889999996
Q ss_pred cCCC---C-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-----------
Q psy845 592 PFGR---C-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK----------- 652 (677)
Q Consensus 592 ~~~~---~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~----------- 652 (677)
+... . .++++.++++..++.+...+.+ .+.+||||||||++||||++++|+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 175 (227)
T cd03260 103 YGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL-------HALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175 (227)
T ss_pred hHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC-------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 4311 1 1345667778777765543321 157999999999999999999999761
Q ss_pred ------------ccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 653 ------------KSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.+.+|| .|. + +.||||++|++|+++
T Consensus 176 ~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 176 STAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred HHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 122452 232 2 249999999999974
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=282.50 Aligned_cols=176 Identities=30% Similarity=0.379 Sum_probs=137.5
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|+++. .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~------ 74 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEK------ 74 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchh------
Confidence 46899999997531 3699999999999999999999999999999999999999999999999988765100
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH-HHHhhhccccccccccccc-chhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~LR~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
+. +..|++++|++|++.+|.+ |++||+.+
T Consensus 75 -------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 105 (218)
T cd03255 75 -------------------------------------------------ELAAFRRRHIGFVFQSFNLLPDLTALENVEL 105 (218)
T ss_pred -------------------------------------------------HHHHHHhhcEEEEeeccccCCCCcHHHHHHH
Confidence 11 2246789999999999875 99999965
Q ss_pred CC---CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
.. .. .++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 106 PLLLAGVPKKERRERAEELLERVGLGDRLNH---------YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCCchhhhc---------ChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 32 11 12346667777776554332 35689999999999999999999976
Q ss_pred ----------cc-cccce---ec---ccccccEEEEEeCCee
Q psy845 652 ----------KK-SGVNI---TR---PVTSCDKVLVMDNGQA 676 (677)
Q Consensus 652 ----------~~-~~~TI---Ls---TI~~aDrIlVLd~GrI 676 (677)
.. .++|| .| .+..||+|++|++|++
T Consensus 177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 11 25673 22 3446999999999985
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=280.64 Aligned_cols=183 Identities=22% Similarity=0.340 Sum_probs=152.0
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
.+.|+.|+|+++ .++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~--------- 71 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE--------- 71 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccccc---------
Confidence 467999999865 4699999999999999999999999999999999999999999999999887654100
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCC
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH 597 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~s 597 (677)
......|+.++|++|++.+|+.|++||+.+....+
T Consensus 72 ---------------------------------------------~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~ 106 (218)
T cd03290 72 ---------------------------------------------ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFN 106 (218)
T ss_pred ---------------------------------------------ccchhhcceEEEEcCCCccccccHHHHHhhcCcCC
Confidence 01234577899999999999999999998654455
Q ss_pred hHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------c-----
Q psy845 598 DTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------K----- 652 (677)
Q Consensus 598 deeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------~----- 652 (677)
+++..++++..++.+.+..+|.|+++.. ...+||||||||++||||++++|+++ .
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~ 186 (218)
T cd03290 107 KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILK 186 (218)
T ss_pred HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 6667888999999999999999999877 67899999999999999999999866 1
Q ss_pred ---ccccce------ecccccccEEEEEeCCe
Q psy845 653 ---KSGVNI------TRPVTSCDKVLVMDNGQ 675 (677)
Q Consensus 653 ---~~~~TI------LsTI~~aDrIlVLd~Gr 675 (677)
..++|+ .+.+..||++++|++|+
T Consensus 187 ~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 187 FLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 123452 23356799999999985
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=292.77 Aligned_cols=175 Identities=28% Similarity=0.394 Sum_probs=143.3
Q ss_pred cEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 436 TIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
-++++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~--------- 74 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE--------- 74 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC---------
Confidence 48999999999743 24599999999999999999999999999999999999999999999999998765
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~ 592 (677)
+..++|++++||+|+| .+++.|++|||.+
T Consensus 75 -------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~ 105 (279)
T PRK13650 75 -------------------------------------------------NVWDIRHKIGMVFQNPDNQFVGATVEDDVAF 105 (279)
T ss_pred -------------------------------------------------cHHHHHhhceEEEcChHHhcccccHHHHHHh
Confidence 5567788999999997 3567899999975
Q ss_pred CC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
.. ..+ ++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~ 176 (279)
T PRK13650 106 GLENKGIPHEEMKERVNEALELVGMQDFKERE---------PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176 (279)
T ss_pred hHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 32 122 24567788888887665443 4689999999999999999999976
Q ss_pred ----------ccc-ccce---e---cccccccEEEEEeCCeeC
Q psy845 652 ----------KKS-GVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~-~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| . ..+..||||++|++|+++
T Consensus 177 ~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~ 219 (279)
T PRK13650 177 LELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVE 219 (279)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 122 6673 2 234569999999999974
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=297.91 Aligned_cols=192 Identities=26% Similarity=0.312 Sum_probs=138.8
Q ss_pred ccEEEEeeeEEeCCC---CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhh
Q psy845 435 GTIKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 435 g~I~fknVsFsY~~~---~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
.-|+++||+|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.-
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~----- 94 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKK----- 94 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccc-----
Confidence 458999999999753 135999999999999999999999999999999999999999999999999985420
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYN 589 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrEN 589 (677)
..++ +.. .+ +.. ...+.+.+|++++||+|+| .+|++|++||
T Consensus 95 -----~~~~--~~~-------------------~~---------~~~--~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~en 137 (320)
T PRK13631 95 -----NNHE--LIT-------------------NP---------YSK--KIKNFKELRRRVSMVFQFPEYQLFKDTIEKD 137 (320)
T ss_pred -----cccc--ccc-------------------cc---------ccc--ccchHHHHHhcEEEEEECchhccccchHHHH
Confidence 0000 000 00 000 0013567899999999998 7999999999
Q ss_pred cccCC---CCChHHH----HHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RCHDTEL----WDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~sdeeI----~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.++. ..++++. .++++..++. ++. +. .+.+||||||||++|||||+++|+++
T Consensus 138 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~--~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD 208 (320)
T PRK13631 138 IMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYL-------ER--SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLD 208 (320)
T ss_pred HHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHh-------cC--CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCC
Confidence 97542 1233332 2233333332 111 11 57899999999999999999999976
Q ss_pred --------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||+||++|+++
T Consensus 209 ~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 209 PKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1246673 23 23 459999999999974
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=277.68 Aligned_cols=169 Identities=28% Similarity=0.399 Sum_probs=136.0
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++|++++|++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------------- 66 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA------------- 66 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-------------
Confidence 367999999752 369999999999999999999999999999999999999999999999987632
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccCCC
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPFGR 595 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~~~ 595 (677)
...|++++|++|++ .+|+.|++||+.+...
T Consensus 67 ------------------------------------------------~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~ 98 (205)
T cd03226 67 ------------------------------------------------KERRKSIGYVMQDVDYQLFTDSVREELLLGLK 98 (205)
T ss_pred ------------------------------------------------HHhhcceEEEecChhhhhhhccHHHHHhhhhh
Confidence 23566788888887 4678899999975321
Q ss_pred ---CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 596 ---CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 596 ---~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 169 (205)
T cd03226 99 ELDAGNEQAETVLKDLDLYALKERH---------PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169 (205)
T ss_pred hcCccHHHHHHHHHHcCCchhcCCC---------chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 1235678888998887665443 3589999999999999999999976
Q ss_pred ---cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. -||+|++|++|++|
T Consensus 170 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 170 RELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 1235663 22 233 49999999999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=290.86 Aligned_cols=174 Identities=24% Similarity=0.366 Sum_probs=142.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 72 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE---------- 72 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC----------
Confidence 48999999999743 3599999999999999999999999999999999999999999999999998765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~ 593 (677)
+..++|++++||+|+| .++..|++||+.++
T Consensus 73 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~ 104 (274)
T PRK13647 73 ------------------------------------------------NEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG 104 (274)
T ss_pred ------------------------------------------------CHHHHHhhEEEEecChhhhhccCcHHHHHHhh
Confidence 5567788899999998 67889999999753
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 175 (274)
T PRK13647 105 PVNMGLDKDEVERRVEEALKAVRMWDFRDKP---------PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQE 175 (274)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 2 122 24567788888887665443 3589999999999999999999976
Q ss_pred ---------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 176 ~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~ 217 (274)
T PRK13647 176 TLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1235673 22 33 459999999999974
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=278.61 Aligned_cols=173 Identities=28% Similarity=0.435 Sum_probs=138.0
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|++.. +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--------- 72 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE--------- 72 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC---------
Confidence 67999999997542 2699999999999999999999999999999999999999999999999987542
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
..++|++++|+||++.+|. .|++||+.+.
T Consensus 73 --------------------------------------------------~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 102 (218)
T cd03266 73 --------------------------------------------------PAEARRRLGFVSDSTGLYDRLTARENLEYF 102 (218)
T ss_pred --------------------------------------------------HHHHHhhEEEecCCcccCcCCCHHHHHHHH
Confidence 2456788999999998887 4999999642
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 173 (218)
T cd03266 103 AGLYGLKGDELTARLEELADRLGMEELLDR---------RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173 (218)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHHhh---------hhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHH
Confidence 1 111 3445667777777655433 46789999999999999999999976
Q ss_pred ---------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + ..||||++|++|+++
T Consensus 174 ~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 174 ALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 1235663 222 2 348999999999974
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=283.94 Aligned_cols=177 Identities=24% Similarity=0.349 Sum_probs=143.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC---CCccEEEECCEecccccHHHhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~---p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||+++.+.
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~------- 72 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ------- 72 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC-------
Confidence 3789999999975 369999999999999999999999999999999999985 6999999999998765
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+....|++++|+||++.+|+.|++||+.+
T Consensus 73 ---------------------------------------------------~~~~~~~~i~~~~q~~~l~~~tv~eni~~ 101 (246)
T PRK14269 73 ---------------------------------------------------DVVALRKNVGMVFQQPNVFVKSIYENISY 101 (246)
T ss_pred ---------------------------------------------------CHHHHhhhEEEEecCCccccccHHHHhhh
Confidence 55567889999999999999999999965
Q ss_pred CCC---------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 593 FGR---------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 593 ~~~---------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+.. ..++++.++++..++.+++..+. +. .+.+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~ 176 (246)
T PRK14269 102 APKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL---KQ--NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPI 176 (246)
T ss_pred HHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh---cC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 311 11234667888888876655432 11 56799999999999999999999976
Q ss_pred -----------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||||++|++|+++
T Consensus 177 ~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 177 SSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 1235562 332 2 359999999999974
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=277.69 Aligned_cols=171 Identities=30% Similarity=0.409 Sum_probs=135.7
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++|++++|+++.+++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 68 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL------------ 68 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccC------------
Confidence 36899999976324699999999999999999999999999999999999999999999999988765
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccCC-
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPFG- 594 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~~- 594 (677)
+...+|++++|+||++ .+++.|++||+.+..
T Consensus 69 ----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~ 102 (211)
T cd03225 69 ----------------------------------------------SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE 102 (211)
T ss_pred ----------------------------------------------CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHH
Confidence 5566788899999998 367889999996421
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 103 NLGLPEEEIEERVEEALELVGLEGLRDR---------SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HcCCCHHHHHHHHHHHHHHcCcHhhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 112 2345566777766554332 35789999999999999999999976
Q ss_pred -------cccccce---ec---cccc-ccEEEEEeCCe
Q psy845 652 -------KKSGVNI---TR---PVTS-CDKVLVMDNGQ 675 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI~~-aDrIlVLd~Gr 675 (677)
..+++|+ .| .+.+ ||+|++|++|+
T Consensus 174 ~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 1135563 22 2344 99999999996
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=281.68 Aligned_cols=178 Identities=28% Similarity=0.374 Sum_probs=139.0
Q ss_pred cEEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-++++||+++|+++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~----- 79 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA----- 79 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHH-----
Confidence 389999999997532 3699999999999999999999999999999999999999999999999998776110
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhccccccccccccc-chhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLFNG-TIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LFsg-TIrENI~ 591 (677)
...++| +.++|++|++.+|.. |++||+.
T Consensus 80 --------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 109 (233)
T PRK11629 80 --------------------------------------------------AKAELRNQKLGFIYQFHHLLPDFTALENVA 109 (233)
T ss_pred --------------------------------------------------HHHHHHhccEEEEecCcccCCCCCHHHHHH
Confidence 122343 679999999988864 9999996
Q ss_pred cC---CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PF---GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~---~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+. ...+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 110 MPLLIGKKKPAEINSRALEMLAAVGLEHRANH---------RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 42 1111 2346667777776544322 35689999999999999999999976
Q ss_pred ---------c--c-cccce------ecccccccEEEEEeCCeeC
Q psy845 652 ---------K--K-SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~--~-~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
. . .++|| .+.+..+|++++|++|+++
T Consensus 181 ~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~ 224 (233)
T PRK11629 181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT 224 (233)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEE
Confidence 1 1 35663 2335568999999999984
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=281.48 Aligned_cols=176 Identities=31% Similarity=0.447 Sum_probs=137.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-------- 71 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK-------- 71 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHh--------
Confidence 4689999999752 3699999999999999999999999999999999999999999999999988765100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+...+|+.++|+||++.+|. .|++||+.+..
T Consensus 72 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 104 (241)
T cd03256 72 -----------------------------------------------ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRL 104 (241)
T ss_pred -----------------------------------------------HHHHHHhccEEEcccCcccccCcHHHHHHhhhc
Confidence 24567888999999998886 69999996421
Q ss_pred --------------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 595 --------------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 595 --------------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
+..++++.++++..++.+... . .+.+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~--~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 175 (241)
T cd03256 105 GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-------Q--RADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175 (241)
T ss_pred ccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-------C--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 011234555666666644321 1 56799999999999999999999976
Q ss_pred ---------------cc-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ---------------KK-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+. .||+|++|++|+++
T Consensus 176 D~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 22 233 59999999999974
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=276.96 Aligned_cols=175 Identities=27% Similarity=0.386 Sum_probs=138.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~-------- 71 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR-------- 71 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHH--------
Confidence 4689999999754 3699999999999999999999999999999999999999999999999988665100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+....|+.++|++|++.+|. .|++||+.+..
T Consensus 72 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~ 104 (214)
T cd03292 72 -----------------------------------------------AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALE 104 (214)
T ss_pred -----------------------------------------------HHHHHHHheEEEecCchhccCCcHHHHHHHHHH
Confidence 23457889999999999987 59999996431
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 175 (214)
T cd03292 105 VTGVPPREIRKRVPAALELVGLSHKHRA---------LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175 (214)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhC---------ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence 111 2346667777777654433 34689999999999999999999976
Q ss_pred -------cccccce---ec---ccc-cccEEEEEeCCee
Q psy845 652 -------KKSGVNI---TR---PVT-SCDKVLVMDNGQA 676 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI~-~aDrIlVLd~GrI 676 (677)
..+++|| .| .+. -||+|++|++|++
T Consensus 176 ~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 176 MNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 1235663 22 233 3899999999985
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=278.55 Aligned_cols=173 Identities=27% Similarity=0.396 Sum_probs=135.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++.+++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD----------- 69 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-----------
Confidence 478999999975324699999999999999999999999999999999999999999999999887543
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
. .++|++++|++|++.+| +.|++||+.+..
T Consensus 70 -----------------------------------------------~-~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 101 (220)
T cd03263 70 -----------------------------------------------R-KAARQSLGYCPQFDALFDELTVREHLRFYAR 101 (220)
T ss_pred -----------------------------------------------h-HHHhhhEEEecCcCCccccCCHHHHHHHHHH
Confidence 2 45678899999999888 679999996421
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.+.. ++ ...+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l 172 (220)
T cd03263 102 LKGLPKSEIKEEVELLLRVLGLTDKA-------NK--RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHH-------hC--hhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence 112 23455666666665433 22 34689999999999999999999976
Q ss_pred ------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|+ .| .+. .||+|++|++|+++
T Consensus 173 ~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 173 WDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211 (220)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 1234563 22 233 49999999999974
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=277.69 Aligned_cols=177 Identities=30% Similarity=0.403 Sum_probs=137.0
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|+++. .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~------ 75 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSN------ 75 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHh------
Confidence 68899999997531 3699999999999999999999999999999999999999999999999998765110
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccccccc-cchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLFN-GTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LFs-gTIrENI~~ 592 (677)
+...+| +.++|++|++.+|. .|++||+.+
T Consensus 76 -------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 106 (221)
T TIGR02211 76 -------------------------------------------------ERAKLRNKKLGFIYQFHHLLPDFTALENVAM 106 (221)
T ss_pred -------------------------------------------------HHHHHHHhcEEEEecccccCCCCcHHHHHHH
Confidence 222344 67999999999885 699999964
Q ss_pred C---CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 F---GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~---~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
. ...+ ++++.++++..++++...+ ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 107 PLLIGKKSVKEAKERAYEMLEKVGLEHRINH---------RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhhhC---------ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 2 1111 2235556666665543322 35789999999999999999999976
Q ss_pred ----------cc-cccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----------KK-SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~-~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
.. .++|| +..+..||+|++|++|+++
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 178 KIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 11 25663 2234569999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=281.54 Aligned_cols=173 Identities=28% Similarity=0.404 Sum_probs=140.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~---------- 70 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTI---------- 70 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc----------
Confidence 48899999999653 599999999999999999999999999999999999999999999999988665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR 595 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~ 595 (677)
+..++|+.++|++|++.+|+.|++||+.+...
T Consensus 71 ------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 102 (241)
T PRK14250 71 ------------------------------------------------DVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPM 102 (241)
T ss_pred ------------------------------------------------ChHHhhhcEEEEecCchhchhhHHHHHhcchh
Confidence 55567889999999999999999999975321
Q ss_pred ---CChHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 596 ---CHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 596 ---~sdeeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
..++++.++++..++. +... . ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~-------~--~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (241)
T PRK14250 103 LKGEKNVDVEYYLSIVGLNKEYAT-------R--DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL 173 (241)
T ss_pred hcCcHHHHHHHHHHHcCCCHHHhh-------C--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 2234566667776664 2221 1 46789999999999999999999976
Q ss_pred ----cc-cccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ----KK-SGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~-~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. +. .||+|++|++|+++
T Consensus 174 l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV 211 (241)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 11 25673 232 33 49999999999974
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=277.21 Aligned_cols=174 Identities=32% Similarity=0.433 Sum_probs=138.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~-------- 72 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR-------- 72 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH--------
Confidence 6899999999533 4699999999999999999999999999999999999999999999999998765100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+...+|++++|++|++.+|. .|++||+.+..
T Consensus 73 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (214)
T TIGR02673 73 -----------------------------------------------QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLE 105 (214)
T ss_pred -----------------------------------------------HHHHHHhheEEEecChhhccCCcHHHHHHHHHH
Confidence 23457888999999999985 69999996421
Q ss_pred --C----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --R----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. ..++++.++++..++.+...+. ..+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l 176 (214)
T TIGR02673 106 VRGKKEREIQRRVGAALRQVGLEHKADAF---------PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERI 176 (214)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH
Confidence 1 1234567788888876654432 3589999999999999999999976
Q ss_pred -------cccccce---ecc---cc-cccEEEEEeCCe
Q psy845 652 -------KKSGVNI---TRP---VT-SCDKVLVMDNGQ 675 (677)
Q Consensus 652 -------~~~~~TI---LsT---I~-~aDrIlVLd~Gr 675 (677)
..+++|| .|. +. -||+|++|++|+
T Consensus 177 ~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 177 LDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 1235663 232 33 389999999996
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=295.69 Aligned_cols=233 Identities=30% Similarity=0.505 Sum_probs=186.1
Q ss_pred cEEEEeeeEEeC--CCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHH
Q psy845 436 TIKFKNVSLRYR--DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 436 ~I~fknVsFsY~--~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~ 508 (677)
-++++|++.+|. +....++|||||+|++||++|+||+||||||--.+.++|+.+- -+|+|.+||.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 478899988885 3345799999999999999999999999999999999999854 368999999999888877
Q ss_pred Hhhh----hcccccCCcc-----ccc------------------------------------------------------
Q psy845 509 TLRS----RLSVIPQDPV-----LFN------------------------------------------------------ 525 (677)
Q Consensus 509 ~~~~----~i~~v~q~~~-----lf~------------------------------------------------------ 525 (677)
++|+ +|++|+|||. +++
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQR 165 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQR 165 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhH
Confidence 7765 8999999998 333
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 166 VMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 166 VMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred HHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHH
Confidence
Q ss_pred -----------------------------------------------------------------------cccccCCCC
Q psy845 526 -----------------------------------------------------------------------GIVGRTGAG 534 (677)
Q Consensus 526 -----------------------------------------------------------------------~~~~~n~~~ 534 (677)
|.||++|||
T Consensus 246 F~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSG 325 (534)
T COG4172 246 FAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSG 325 (534)
T ss_pred hhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCC
Confidence 899999999
Q ss_pred CchhHHHHHHhhhhccccccccccchhhhhHH---HHhhhccccccccccc---ccchhhccc----cCC-CC----ChH
Q psy845 535 KSSLLVALFRLVELSSGQIKIDDFDIASVELE---TLRSRLSVIPQDPVLF---NGTIRYNLD----PFG-RC----HDT 599 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~---~LR~~I~~V~Qd~~LF---sgTIrENI~----~~~-~~----sde 599 (677)
||||-.||+||.+++ |+|+++|+|+...+.+ -+|+++-+|+|||+=- ..||.+-|. ..+ .. .++
T Consensus 326 KsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~ 404 (534)
T COG4172 326 KSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQ 404 (534)
T ss_pred cchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHH
Confidence 999999999999999 9999999999988655 4689999999999731 235544442 222 22 245
Q ss_pred HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcc-------------------------c
Q psy845 600 ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKK-------------------------S 654 (677)
Q Consensus 600 eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~-------------------------~ 654 (677)
.+.+|++++|++.-... - ...++|||||||||||||++-+|+.+.. .
T Consensus 405 rv~~aL~EVGLDp~~r~------R--YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~ 476 (534)
T COG4172 405 RVIEALEEVGLDPATRN------R--YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH 476 (534)
T ss_pred HHHHHHHHcCCChhHhh------c--CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHh
Confidence 57889999988753321 0 4689999999999999999999985511 1
Q ss_pred ccc---e---ecccc-cccEEEEEeCCeeC
Q psy845 655 GVN---I---TRPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 655 ~~T---I---LsTI~-~aDrIlVLd~GrIV 677 (677)
+.+ | ++.++ -||+++||++||||
T Consensus 477 ~LsYLFISHDL~VvrAl~~~viVm~~GkiV 506 (534)
T COG4172 477 GLSYLFISHDLAVVRALCHRVIVMRDGKIV 506 (534)
T ss_pred CCeEEEEeccHHHHHHhhceEEEEeCCEEe
Confidence 112 3 23333 39999999999996
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=280.62 Aligned_cols=176 Identities=32% Similarity=0.439 Sum_probs=137.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-------- 72 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK-------- 72 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHH--------
Confidence 6789999999722 3699999999999999999999999999999999999999999999999988665100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~ 595 (677)
+...+|++++|+||++.+|. .|++||+.+...
T Consensus 73 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 105 (243)
T TIGR02315 73 -----------------------------------------------KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRL 105 (243)
T ss_pred -----------------------------------------------HHHHHHhheEEEcCCCcccccccHHHHHhhccc
Confidence 23457888999999998885 699999964210
Q ss_pred ---------------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 596 ---------------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 596 ---------------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
..++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 176 (243)
T TIGR02315 106 GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ---------RADQLSGGQQQRVAIARALAQQPDLILADEPIASL 176 (243)
T ss_pred ccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 112345566666666544322 46799999999999999999999976
Q ss_pred ---------------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+ +.||+|++|++|+++
T Consensus 177 D~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 177 DPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 11 25663 22 23 349999999999974
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=280.37 Aligned_cols=172 Identities=27% Similarity=0.416 Sum_probs=132.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 67 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL----------- 67 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCC-----------
Confidence 468999999974 3599999999999999999999999999999999999999999999999998765
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
+... .|+.++|+||++.+|.+ |++||+.+..
T Consensus 68 -----------------------------------------------~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~ 100 (236)
T cd03219 68 -----------------------------------------------PPHEIARLGIGRTFQIPRLFPELTVLENVMVAA 100 (236)
T ss_pred -----------------------------------------------CHHHHHhcCEEEEecccccccCCCHHHHHHHHH
Confidence 3333 35679999999988875 9999996432
Q ss_pred C-C------------C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------
Q psy845 595 R-C------------H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------ 651 (677)
Q Consensus 595 ~-~------------s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------ 651 (677)
. . . .+++.++++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 101 QARTGSGLLLARARREEREARERAEELLERVGLADLA-------DR--PAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred hhccccccccccccccHHHHHHHHHHHHHHcCccchh-------hC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1 0 0 11233444444443221 11 46799999999999999999999876
Q ss_pred ------------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
...++|| .| .+ ..||+|++|++|+++
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 172 AGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 1145663 22 23 349999999999974
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=276.16 Aligned_cols=170 Identities=28% Similarity=0.396 Sum_probs=135.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------- 67 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV----------- 67 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC-----------
Confidence 468999999975 3699999999999999999999999999999999999999999999999988654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~ 595 (677)
+ ..+++++|+||++.+|. .|++||+.+...
T Consensus 68 -----------------------------------------------~--~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 98 (213)
T cd03259 68 -----------------------------------------------P--PERRNIGMVFQDYALFPHLTVAENIAFGLK 98 (213)
T ss_pred -----------------------------------------------c--hhhccEEEEcCchhhccCCcHHHHHHhHHH
Confidence 2 13567899999988885 699999964211
Q ss_pred ---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 596 ---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 596 ---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l 169 (213)
T cd03259 99 LRGVPKAEIRARVRELLELVGLEGLLNR---------YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169 (213)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhc---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 11 2345667777777655443 34689999999999999999999976
Q ss_pred -----c--c-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----K--K-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. . .++|| .|. + ..||+|++|++|+++
T Consensus 170 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred HHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 1 1 25663 232 2 349999999999974
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=288.71 Aligned_cols=176 Identities=30% Similarity=0.433 Sum_probs=139.2
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
++++||+++|++.. +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------- 75 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK------- 75 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcC-------
Confidence 78999999997532 36999999999999999999999999999999999999999999999999986640
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
.+...+|++++||||+| .+|+.|++||+.
T Consensus 76 -------------------------------------------------~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 106 (287)
T PRK13637 76 -------------------------------------------------VKLSDIRKKVGLVFQYPEYQLFEETIEKDIA 106 (287)
T ss_pred -------------------------------------------------ccHHHHhhceEEEecCchhccccccHHHHHH
Confidence 02346788999999987 578899999997
Q ss_pred cCC---CCChH----HHHHHHHHccch--hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 592 PFG---RCHDT----ELWDALEKSHLK--SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 592 ~~~---~~sde----eI~~Al~~a~l~--efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
++. ..+++ ++.++++.+++. ++ .|. ...+||||||||++|||||+.+|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~~--~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~ 177 (287)
T PRK13637 107 FGPINLGLSEEEIENRVKRAMNIVGLDYEDY-------KDK--SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177 (287)
T ss_pred hHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-------ccC--CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCH
Confidence 532 12333 356677777764 22 122 46799999999999999999999976
Q ss_pred -------------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -------------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+ +.||||++|++|+++
T Consensus 178 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224 (287)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 26673 22 23 359999999999974
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=287.12 Aligned_cols=175 Identities=25% Similarity=0.384 Sum_probs=143.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~---------- 74 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE---------- 74 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC----------
Confidence 3899999999975445699999999999999999999999999999999999999999999999998766
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~ 593 (677)
+...+|+.++|++|++ .+++.|++||+.+.
T Consensus 75 ------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~ 106 (279)
T PRK13635 75 ------------------------------------------------TVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG 106 (279)
T ss_pred ------------------------------------------------cHHHHhhheEEEEeCHHHhcccccHHHHHhhh
Confidence 5556778899999998 46678999999753
Q ss_pred C---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+. +++.++++..++.+++... ..+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~ 177 (279)
T PRK13635 107 LENIGVPREEMVERVDQALRQVGMEDFLNRE---------PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177 (279)
T ss_pred HhhCCCCHHHHHHHHHHHHHHcCChhhhhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 1222 3467778888887766554 3589999999999999999999976
Q ss_pred ---------ccc-ccce------ecccccccEEEEEeCCeeC
Q psy845 652 ---------KKS-GVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~-~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| ...+..||||++|++|+++
T Consensus 178 ~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~ 219 (279)
T PRK13635 178 EVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEIL 219 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 112 5673 2235569999999999974
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=277.14 Aligned_cols=173 Identities=27% Similarity=0.453 Sum_probs=132.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 67 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL----------- 67 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
+..+ .|++++|+||++.+|.+ |++||+.+..
T Consensus 68 -----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (222)
T cd03224 68 -----------------------------------------------PPHERARAGIGYVPEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred -----------------------------------------------CHHHHHhcCeEEeccccccCCCCcHHHHHHHHh
Confidence 3333 46779999999999876 9999997532
Q ss_pred CCC-hH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 595 RCH-DT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 595 ~~s-de----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
... .+ ++.++++.. ..+++.+++ ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~------~~l~~~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 172 (222)
T cd03224 101 YARRRAKRKARLERVYELF------PRLKERRKQ--LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172 (222)
T ss_pred hhcCchhHHHHHHHHHHHH------HhhhhhhhC--chhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence 211 11 122222222 122333333 56799999999999999999999876
Q ss_pred ------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...++|| .|. + ..||+|++|++|+++
T Consensus 173 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 173 EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV 211 (222)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE
Confidence 1135663 332 2 349999999999974
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=274.22 Aligned_cols=176 Identities=30% Similarity=0.386 Sum_probs=137.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~-------- 72 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNR-------- 72 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChh--------
Confidence 6899999999533 3699999999999999999999999999999999999999999999999998765100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
....+|+.++|++|++.++ +.|++||+.+..
T Consensus 73 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (222)
T PRK10908 73 -----------------------------------------------EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI 105 (222)
T ss_pred -----------------------------------------------HHHHHHhheEEEecCccccccccHHHHHHhHHH
Confidence 2334788999999999874 679999997531
Q ss_pred --CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+++ ++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 176 (222)
T PRK10908 106 IAGASGDDIRRRVSAALDKVGLLDKAKN---------FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGI 176 (222)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhC---------CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence 22222 34566677766554332 35789999999999999999999876
Q ss_pred -------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..++.|+ .| .+. -||||++|++|+++
T Consensus 177 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 177 LRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 1134552 22 233 38999999999985
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=274.87 Aligned_cols=170 Identities=28% Similarity=0.427 Sum_probs=136.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|++. ++++|+||++++| ++||+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 66 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ----------- 66 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccc-----------
Confidence 4789999999653 6999999999999 9999999999999999999999999999999999887655
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
+ ..+|++++|++|++.+|.+ |++||+.+..
T Consensus 67 -----------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 98 (211)
T cd03264 67 -----------------------------------------------P-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAW 98 (211)
T ss_pred -----------------------------------------------h-HHHHhheEEecCCCcccccCCHHHHHHHHHH
Confidence 4 5678889999999998875 9999996421
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.++.+ + ...+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~--~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 169 (211)
T cd03264 99 LKGIPSKEVKARVDEVLELVNLGDRAK-------K--KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169 (211)
T ss_pred HhCCCHHHHHHHHHHHHHHCCCHHHHh-------C--chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 111 244667788887765432 2 34689999999999999999999976
Q ss_pred ------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .|||+++|++|+++
T Consensus 170 ~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 170 RNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred HHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1124553 22 233 48999999999974
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=280.76 Aligned_cols=179 Identities=25% Similarity=0.326 Sum_probs=141.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||+++.+.+
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 79 (253)
T PRK14242 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH---- 79 (253)
T ss_pred EEEEeeeEEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc----
Confidence 59999999999753 59999999999999999999999999999999999975 68999999999875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|+.|++||+
T Consensus 80 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 107 (253)
T PRK14242 80 ----------------------------------------------------VDVVELRRRVGMVFQKPNPFPKSIFENV 107 (253)
T ss_pred ----------------------------------------------------cCHHHHhhcEEEEecCCCCCcCcHHHHH
Confidence 0445678899999999999999999999
Q ss_pred ccCC---CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.++. .. .++++.++++.+++.+++... ++. ...+||||||||++||||++++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~ 182 (253)
T PRK14242 108 AYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDR---LHE--SALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182 (253)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHH---hhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 6421 11 134567778888886654322 122 46799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 183 ~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 183 IATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 1234563 22 23 349999999999974
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-32 Score=287.61 Aligned_cols=179 Identities=24% Similarity=0.358 Sum_probs=137.3
Q ss_pred cEEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 436 TIKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.++++||+++|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~----- 76 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK----- 76 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc-----
Confidence 378999999997432 369999999999999999999999999999999999999999999999999865300
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhcc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNL 590 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI 590 (677)
..+...+|++++||||+| .+|..|++||+
T Consensus 77 -------------------------------------------------~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i 107 (286)
T PRK13646 77 -------------------------------------------------DKYIRPVRKRIGMVFQFPESQLFEDTVEREI 107 (286)
T ss_pred -------------------------------------------------cchHHHHHhheEEEecChHhccchhhHHHHH
Confidence 004467889999999987 68888999999
Q ss_pred ccCC---CCChHH----HHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RCHDTE----LWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~sdee----I~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.++. ..+.++ +.++++..|+. +.. ++ .+.+||||||||++|||||+.+|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~--~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 108 IFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVM-------SQ--SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred HhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh-------hC--CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 7532 123322 33344444442 111 11 57899999999999999999999976
Q ss_pred -------------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -------------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+ +.||||++|++|+++
T Consensus 179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~ 225 (286)
T PRK13646 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 11 36673 22 23 358999999999974
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.9e-33 Score=296.33 Aligned_cols=177 Identities=32% Similarity=0.423 Sum_probs=139.7
Q ss_pred EEEEeeeEEeCC--CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~--~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|+++||+++|++ +..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~------ 75 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEK------ 75 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHH------
Confidence 689999999972 234699999999999999999999999999999999999999999999999998776110
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+...+|++++||+|++.+|. .|++||+.+.
T Consensus 76 -------------------------------------------------~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~ 106 (343)
T PRK11153 76 -------------------------------------------------ELRKARRQIGMIFQHFNLLSSRTVFDNVALP 106 (343)
T ss_pred -------------------------------------------------HHHHHhcCEEEEeCCCccCCCCcHHHHHHHH
Confidence 33456889999999999985 7999999643
Q ss_pred C---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..++ +++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---------~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~ 177 (343)
T PRK11153 107 LELAGTPKAEIKARVTELLELVGLSDKADR---------YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 1222 345566777766554332 35689999999999999999999976
Q ss_pred ---------cc-cccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. +. .||||++|++|+++
T Consensus 178 ~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~ 220 (343)
T PRK11153 178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV 220 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 232 33 39999999999974
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-32 Score=273.78 Aligned_cols=173 Identities=30% Similarity=0.413 Sum_probs=135.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++..-+
T Consensus 1 l~~~~l~~~~~~~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 68 (213)
T cd03262 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK---------- 68 (213)
T ss_pred CEEEEEEEEECCe--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccc----------
Confidence 4689999999753 6999999999999999999999999999999999999999999999999874310
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
.+...+|++++|++|++.+|. .|++||+.+..
T Consensus 69 ----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 102 (213)
T cd03262 69 ----------------------------------------------KNINELRQKVGMVFQQFNLFPHLTVLENITLAPI 102 (213)
T ss_pred ----------------------------------------------hhHHHHHhcceEEecccccCCCCcHHHHHHhHHH
Confidence 044567889999999999886 69999996431
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+.+. +++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 173 (213)
T cd03262 103 KVKGMSKAEAEERALELLEKVGLADKADA---------YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173 (213)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhh---------CccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 1222 234555555555443332 35789999999999999999999976
Q ss_pred --------cccccce---ec---ccc-cccEEEEEeCCee
Q psy845 652 --------KKSGVNI---TR---PVT-SCDKVLVMDNGQA 676 (677)
Q Consensus 652 --------~~~~~TI---Ls---TI~-~aDrIlVLd~GrI 676 (677)
..+++|+ .| .+. .||+|++|++|++
T Consensus 174 l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 174 VLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 1235663 22 343 4999999999985
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-33 Score=269.89 Aligned_cols=168 Identities=24% Similarity=0.339 Sum_probs=138.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+.+++|.|+|... =-..++++++||++||+||||||||||+|+++||..|++|+|.|||+|....++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--------- 68 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--------- 68 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc---------
Confidence 5678999999753 235789999999999999999999999999999999999999999999877621
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
.++-+++++||..|| +.|+++|+.++-
T Consensus 69 ---------------------------------------------------~~RPVSmlFQEnNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 69 ---------------------------------------------------AERPVSMLFQENNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred ---------------------------------------------------ccCChhhhhhccccchhhhhhhhhcccCC
Confidence 245678888888888 679999997652
Q ss_pred ---CC---ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 ---RC---HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 ---~~---sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
+. ..+.+..|+.++|+.++.++|| .+||||||||+|+||+++|+.||+
T Consensus 98 P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP---------~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eM 168 (231)
T COG3840 98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM 168 (231)
T ss_pred cccccCHHHHHHHHHHHHHhChhhHhhhCc---------cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHH
Confidence 22 3455888999999999999987 479999999999999999999987
Q ss_pred --------cccccce---ecccc----cccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRPVT----SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsTI~----~aDrIlVLd~GrIV 677 (677)
.-++.|+ .|+.. -+||++++++|||.
T Consensus 169 l~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 169 LALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA 209 (231)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE
Confidence 1234562 55543 48999999999984
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-32 Score=296.03 Aligned_cols=172 Identities=24% Similarity=0.339 Sum_probs=140.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|+++ ..+|+|+||++++||.+||+||||||||||+++|+|+.+|++|+|.+||.++.+.
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~---------- 71 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL---------- 71 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC----------
Confidence 38899999999533 3699999999999999999999999999999999999999999999999998776
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+.. +++++||+|++.+| +.|++||+.++.
T Consensus 72 ------------------------------------------------~~~--~r~ig~v~Q~~~lfp~~tv~eNi~~~~ 101 (356)
T PRK11650 72 ------------------------------------------------EPA--DRDIAMVFQNYALYPHMSVRENMAYGL 101 (356)
T ss_pred ------------------------------------------------CHH--HCCEEEEeCCccccCCCCHHHHHHhHH
Confidence 332 36899999999999 569999997542
Q ss_pred C---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+ .+ ++++.++++..++.++..+.| .+||||||||++|||||+++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~ 172 (356)
T PRK11650 102 KIRGMPKAEIEERVAEAARILELEPLLDRKP---------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ 172 (356)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 1 22 244677888888887765543 589999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|.. +-||||++|++|+++
T Consensus 173 l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~ 214 (356)
T PRK11650 173 MRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE 214 (356)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 11 25562 3322 349999999999984
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-32 Score=277.78 Aligned_cols=177 Identities=34% Similarity=0.454 Sum_probs=138.8
Q ss_pred EEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|+++|++++|++. ..++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++...+..
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~------ 75 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGK------ 75 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH------
Confidence 6899999999753 12699999999999999999999999999999999999999999999999988665100
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+....|+.++|+||++.+|. .|++||+.+.
T Consensus 76 -------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (233)
T cd03258 76 -------------------------------------------------ELRKARRRIGMIFQHFNLLSSRTVFENVALP 106 (233)
T ss_pred -------------------------------------------------HHHHHHhheEEEccCcccCCCCcHHHHHHHH
Confidence 22346788999999999996 6999999642
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 107 LEIAGVPKAEIEERVLELLELVGLEDKADA---------YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhc---------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 1 111 3345667777776554433 34689999999999999999999876
Q ss_pred ---------ccc-ccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ---------KKS-GVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~-~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+ ++|| .| .+. .||++++|++|+++
T Consensus 178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (233)
T cd03258 178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5673 22 333 48999999999974
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-32 Score=295.52 Aligned_cols=172 Identities=26% Similarity=0.347 Sum_probs=140.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|+++||+++|++ ..+|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~--------- 73 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR--------- 73 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC---------
Confidence 36999999999974 3599999999999999999999999999999999999999999999999998765
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+. .|++++||+|++.+|. .|++||+.++
T Consensus 74 -------------------------------------------------~~--~~r~ig~vfQ~~~lfp~~tv~eNi~~~ 102 (351)
T PRK11432 74 -------------------------------------------------SI--QQRDICMVFQSYALFPHMSLGENVGYG 102 (351)
T ss_pred -------------------------------------------------CH--HHCCEEEEeCCcccCCCCCHHHHHHHH
Confidence 32 2578999999999995 6999999753
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc--------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK-------------- 652 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~-------------- 652 (677)
- ..+ ++++.++++..++.++..+ ...+||||||||+||||||+++|+++.
T Consensus 103 l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r---------~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~ 173 (351)
T PRK11432 103 LKMLGVPKEERKQRVKEALELVDLAGFEDR---------YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR 173 (351)
T ss_pred HhHcCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 2 122 3456778888888765443 346899999999999999999999760
Q ss_pred ----------c-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 653 ----------K-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----------~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
. .++|+ .|.. .-||||+||++|+++
T Consensus 174 ~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 174 SMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1 25562 3322 348999999999984
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-32 Score=284.23 Aligned_cols=175 Identities=29% Similarity=0.422 Sum_probs=141.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|+++.+++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~---------- 76 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKE---------- 76 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcC----------
Confidence 5899999999974445699999999999999999999999999999999999999999999999998665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~ 593 (677)
+...+|++++|++|++ .+++.|++||+.+.
T Consensus 77 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 108 (271)
T PRK13632 77 ------------------------------------------------NLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG 108 (271)
T ss_pred ------------------------------------------------CHHHHhcceEEEEeCHHHhcCcccHHHHHHhH
Confidence 5567788899999998 45578999999753
Q ss_pred C---CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+.+ ++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~ 179 (271)
T PRK13632 109 LENKKVPPKKMKDIIDDLAKKVGMEDYLDK---------EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179 (271)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 12222 35566777777665443 34799999999999999999999976
Q ss_pred ---------ccc-ccce------ecccccccEEEEEeCCeeC
Q psy845 652 ---------KKS-GVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~-~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| ...+..||+|++|++|+++
T Consensus 180 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 221 (271)
T PRK13632 180 EIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLI 221 (271)
T ss_pred HHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEE
Confidence 112 3563 2234569999999999973
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-32 Score=280.32 Aligned_cols=179 Identities=28% Similarity=0.364 Sum_probs=141.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||+++...+
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 80 (254)
T PRK14273 7 IIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN---- 80 (254)
T ss_pred eEEEeeeEEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc----
Confidence 58999999999753 599999999999999999999999999999999999997 4899999998874320
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|+.|++||+
T Consensus 81 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~eni 108 (254)
T PRK14273 81 ----------------------------------------------------FDILELRRKIGMVFQTPNPFLMSIYDNI 108 (254)
T ss_pred ----------------------------------------------------ccHHHHhhceEEEeeccccccCcHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCCC----C----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFGR----C----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~~----~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+... . .++++.++++.+++.+.+ ++.+++ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~--~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~ 183 (254)
T PRK14273 109 SYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT--NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP 183 (254)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 75321 1 134466777777775433 344555 56899999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .| .+ ..||||++|++|+++
T Consensus 184 ~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 184 ISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1234552 22 22 349999999999974
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-32 Score=287.32 Aligned_cols=178 Identities=25% Similarity=0.356 Sum_probs=139.3
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
|+++||+|+|+++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~------ 75 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK------ 75 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccc------
Confidence 78999999997432 259999999999999999999999999999999999999999999999999853200
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
..+...+|++++||+|+| .+|+.|+.||+.
T Consensus 76 ------------------------------------------------~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~ 107 (288)
T PRK13643 76 ------------------------------------------------QKEIKPVRKKVGVVFQFPESQLFEETVLKDVA 107 (288)
T ss_pred ------------------------------------------------cccHHHHHhhEEEEecCcchhcccchHHHHHH
Confidence 004567889999999988 789999999997
Q ss_pred cCC---CCChH----HHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 592 PFG---RCHDT----ELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 592 ~~~---~~sde----eI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
++. ..+.+ ++.++++..++. ++.. . ...+||||||||++||||++.+|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~--~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 108 FGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-------K--SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-------C--CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 532 12222 345566666663 2321 1 45799999999999999999999976
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +.||||++|++|+++
T Consensus 179 ~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~ 223 (288)
T PRK13643 179 ARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 332 2 359999999999984
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=280.00 Aligned_cols=181 Identities=26% Similarity=0.367 Sum_probs=142.8
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~ 508 (677)
.+.++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||+++.+.+
T Consensus 11 ~~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~-- 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK-- 86 (260)
T ss_pred CceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc--
Confidence 4679999999999753 69999999999999999999999999999999999986 58999999999875320
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
.+...+|++++|++|++.+|+.|++|
T Consensus 87 ------------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~~ 112 (260)
T PRK10744 87 ------------------------------------------------------QDIALLRAKVGMVFQKPTPFPMSIYD 112 (260)
T ss_pred ------------------------------------------------------cchHHHhcceEEEecCCccCcCcHHH
Confidence 04567888999999999999999999
Q ss_pred ccccCC----CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 589 NLDPFG----RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 589 NI~~~~----~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
|+.+.. ..+ ++++.++++..++.+.+... .+. ...+||||||||++||||++++|+++
T Consensus 113 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~L 187 (260)
T PRK10744 113 NIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDK---LHQ--SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSAL 187 (260)
T ss_pred HHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH---Hhc--CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccC
Confidence 997431 122 24567788888876544322 122 46799999999999999999999976
Q ss_pred --------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +-||||++|++|+++
T Consensus 188 D~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 188 DPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1234562 232 2 349999999999974
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-32 Score=271.89 Aligned_cols=170 Identities=24% Similarity=0.404 Sum_probs=138.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++ .++++|+||++++||.++|+||||||||||+++|+|+.+|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 67 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN----------- 67 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-----------
Confidence 478999999964 3699999999999999999999999999999999999999999999999876432
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
...|++++|+||++.+| +.|++||+.+..
T Consensus 68 -------------------------------------------------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 98 (208)
T cd03268 68 -------------------------------------------------IEALRRIGALIEAPGFYPNLTARENLRLLAR 98 (208)
T ss_pred -------------------------------------------------HHHHhhEEEecCCCccCccCcHHHHHHHHHH
Confidence 24567889999998877 579999996432
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..+++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 169 (208)
T cd03268 99 LLGIRKKRIDEVLDVVGLKDSAKK---------KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI 169 (208)
T ss_pred hcCCcHHHHHHHHHHcCCHHHHhh---------hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 2345678888899888765543 35689999999999999999999976
Q ss_pred ---cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
...++|+ .|. +. -||++++|++|+++
T Consensus 170 ~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 170 LSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 1135663 232 32 49999999999974
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=285.21 Aligned_cols=176 Identities=28% Similarity=0.449 Sum_probs=140.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+++|+++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++..-+
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~--------- 74 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR--------- 74 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCc---------
Confidence 48999999999643 46999999999999999999999999999999999999999999999999874210
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~ 593 (677)
.+...+|+.++|+||++ .+|+.|++||+.+.
T Consensus 75 -----------------------------------------------~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 75 -----------------------------------------------KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred -----------------------------------------------chHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence 04557888999999998 57899999999642
Q ss_pred C---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+. +++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---------~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~ 178 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIEHLKDK---------PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 1 1222 345667778777654322 57899999999999999999999976
Q ss_pred ---------ccc-ccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 ---------KKS-GVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~-~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
..+ ++|| . +.+. .||||++|++|+++
T Consensus 179 ~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~ 221 (283)
T PRK13636 179 EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221 (283)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 112 6673 2 2343 59999999999974
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-32 Score=295.10 Aligned_cols=171 Identities=25% Similarity=0.315 Sum_probs=139.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++||+++|++ ..+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.+||.++.+.
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~---------- 71 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL---------- 71 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC----------
Confidence 4899999999975 3599999999999999999999999999999999999999999999999998765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
++ .+++++||+|++.+| +.|++||+.++-
T Consensus 72 ------------------------------------------------~~--~~r~ig~v~Q~~~lfp~~tv~eNi~~~~ 101 (353)
T TIGR03265 72 ------------------------------------------------PP--QKRDYGIVFQSYALFPNLTVADNIAYGL 101 (353)
T ss_pred ------------------------------------------------CH--HHCCEEEEeCCcccCCCCcHHHHHHHHH
Confidence 33 256799999999999 479999997531
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc---------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK--------------- 652 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~--------------- 652 (677)
..+ ++++.++++..++.++..+ ...+||||||||+||||||+++|+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~l~L~~~~~~---------~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~ 172 (353)
T TIGR03265 102 KNRGMGRAEVAERVAELLDLVGLPGSERK---------YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREH 172 (353)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCCchhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 112 3456777888877765543 457899999999999999999999760
Q ss_pred ---------c-cccc-e--eccc----ccccEEEEEeCCeeC
Q psy845 653 ---------K-SGVN-I--TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ---------~-~~~T-I--LsTI----~~aDrIlVLd~GrIV 677 (677)
. .+.| | .|.. .-||||+||++|+++
T Consensus 173 l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 173 LRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1 2556 2 3322 349999999999984
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=278.34 Aligned_cols=178 Identities=28% Similarity=0.395 Sum_probs=140.5
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----ccEEEECCEecccccHHHhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-----~G~I~IdG~dI~~l~~~~~~ 511 (677)
++++||+++|++. .+++|+||++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+.+
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~----- 74 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK----- 74 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc-----
Confidence 6899999999753 5999999999999999999999999999999999999998 999999999876530
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
.+....|++++|+||++.+|+.|++||+.
T Consensus 75 ---------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~e~l~ 103 (247)
T TIGR00972 75 ---------------------------------------------------IDVVELRRRVGMVFQKPNPFPMSIYDNIA 103 (247)
T ss_pred ---------------------------------------------------cchHHHHhheEEEecCcccCCCCHHHHHH
Confidence 03456788999999999999999999996
Q ss_pred cCC---C-CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 592 PFG---R-CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 592 ~~~---~-~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+.. . .+ ++++.++++..++.+++... .+. ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 178 (247)
T TIGR00972 104 YGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR---LHD--SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178 (247)
T ss_pred hHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhH---hhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 421 1 11 24466778888887544211 122 46799999999999999999999976
Q ss_pred -----------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 179 ~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 179 ATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV 222 (247)
T ss_pred HHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1123562 22 23 349999999999974
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-32 Score=273.74 Aligned_cols=178 Identities=24% Similarity=0.295 Sum_probs=139.4
Q ss_pred cEEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-++++|++++|+++. .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~----- 80 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE----- 80 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHH-----
Confidence 489999999997532 2599999999999999999999999999999999999999999999999988765110
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhcccccccccccc-cchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
..... ++.++|++|++.+|. .|++||+.
T Consensus 81 --------------------------------------------------~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~ 110 (228)
T PRK10584 81 --------------------------------------------------ARAKLRAKHVGFVFQSFMLIPTLNALENVE 110 (228)
T ss_pred --------------------------------------------------HHHHHHhheEEEEEcccccCCCcCHHHHHH
Confidence 11223 357999999998887 49999996
Q ss_pred cC---CCC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PF---GRC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~---~~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+. ... ..+++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~ 181 (228)
T PRK10584 111 LPALLRGESSRQSRNGAKALLEQLGLGKRLDH---------LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181 (228)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 42 111 13456677788877665443 34589999999999999999999876
Q ss_pred -----------ccc-ccce------ecccccccEEEEEeCCeeC
Q psy845 652 -----------KKS-GVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~-~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+ +.|| .+.+..||+|++|++|+++
T Consensus 182 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 182 GDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 112 5563 2234669999999999974
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=277.27 Aligned_cols=170 Identities=29% Similarity=0.347 Sum_probs=134.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV----------- 69 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence 789999999975 3699999999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~ 595 (677)
+. .|++++|++|++.+|. .|++||+.+...
T Consensus 70 -----------------------------------------------~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 100 (239)
T cd03296 70 -----------------------------------------------PV--QERNVGFVFQHYALFRHMTVFDNVAFGLR 100 (239)
T ss_pred -----------------------------------------------Cc--cccceEEEecCCcccCCCCHHHHHhhhhh
Confidence 21 2567999999998885 699999975321
Q ss_pred ---C----C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 596 ---C----H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 596 ---~----s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
. . ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 171 (239)
T cd03296 101 VKPRSERPPEAEIRAKVHELLKLVQLDWLADR---------YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred hccccccCCHHHHHHHHHHHHHHcCChhhhhc---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1 1 1235566677766544332 35689999999999999999999976
Q ss_pred -----------ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----------KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. + ..||||++|++|+++
T Consensus 172 ~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 172 RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 112 5673 332 2 349999999999974
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-32 Score=278.14 Aligned_cols=173 Identities=28% Similarity=0.395 Sum_probs=137.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 68 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ----------- 68 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcC-----------
Confidence 4689999999763 3599999999999999999999999999999999999999999999999988766
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+.+.+|+.++|+||++.+|. .|++||+.+..
T Consensus 69 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 101 (242)
T cd03295 69 -----------------------------------------------DPVELRRKIGYVIQQIGLFPHMTVEENIALVPK 101 (242)
T ss_pred -----------------------------------------------ChHHhhcceEEEccCccccCCCcHHHHHHHHHH
Confidence 44567888999999998885 79999996431
Q ss_pred --CCC----hHHHHHHHHHccchh--hHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 --RCH----DTELWDALEKSHLKS--KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~e--fI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
..+ ++++.++++..++.+ ... . .+.+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 172 (242)
T cd03295 102 LLKWPKEKIRERADELLALVGLDPAEFAD-------R--YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172 (242)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCcHHHHh-------c--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 111 234556666666643 211 1 46799999999999999999999976
Q ss_pred -------c--cc-ccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -------K--KS-GVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~--~~-~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
. .+ ++|| .|.. ..||+|++|++|+++
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1 12 5663 3322 348999999999974
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-32 Score=282.34 Aligned_cols=174 Identities=27% Similarity=0.417 Sum_probs=139.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---------- 70 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFS---------- 70 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccc----------
Confidence 6899999999643 35999999999999999999999999999999999999999999999999886651
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--ccccchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFNGTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LFsgTIrENI~~~~ 594 (677)
+...+|+.++|++|+|. +++.|++||+.+..
T Consensus 71 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 103 (274)
T PRK13644 71 -----------------------------------------------KLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP 103 (274)
T ss_pred -----------------------------------------------cHHHHHhheEEEEEChhhhcccchHHHHHHhhH
Confidence 23567888999999975 56789999997532
Q ss_pred C---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
. .+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 174 (274)
T PRK13644 104 ENLCLPPIEIRKRVDRALAEIGLEKYRHR---------SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174 (274)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHHHhcC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 22 2345666777777655433 35799999999999999999999976
Q ss_pred --------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ...+..||||++|++|+++
T Consensus 175 l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 175 VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIV 214 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEE
Confidence 1235663 2335569999999999974
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-32 Score=272.48 Aligned_cols=170 Identities=25% Similarity=0.370 Sum_probs=134.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~----------- 67 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL----------- 67 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999988654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+. .+++++|++|++.+|. .|++||+.+..
T Consensus 68 -----------------------------------------------~~--~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 98 (213)
T cd03301 68 -----------------------------------------------PP--KDRDIAMVFQNYALYPHMTVYDNIAFGLK 98 (213)
T ss_pred -----------------------------------------------Cc--ccceEEEEecChhhccCCCHHHHHHHHHH
Confidence 21 1357999999998884 69999996431
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l 169 (213)
T cd03301 99 LRKVPKDEIDERVREVAELLQIEHLLDR---------KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169 (213)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHHhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 112 2345566777777655433 34689999999999999999999976
Q ss_pred -------cc-cccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 -------KK-SGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~-~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.. .++|+ .|. +. .||+|++|++|+++
T Consensus 170 ~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 11 25663 232 33 38999999999974
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=276.04 Aligned_cols=171 Identities=27% Similarity=0.438 Sum_probs=133.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~----------- 68 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA----------- 68 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC-----------
Confidence 678999999974 3699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~~ 595 (677)
+.. .+++++|++|++.+ ++.|++||+.+...
T Consensus 69 -----------------------------------------------~~~-~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 100 (236)
T TIGR03864 69 -----------------------------------------------PRA-ALARLGVVFQQPTLDLDLSVRQNLRYHAA 100 (236)
T ss_pred -----------------------------------------------Chh-hhhhEEEeCCCCCCcccCcHHHHHHHHHH
Confidence 322 34579999999887 47899999964321
Q ss_pred ---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 596 ---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 596 ---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.+ ++++.+.++..++.+. +++ ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~--~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l 171 (236)
T TIGR03864 101 LHGLSRAEARERIAALLARLGLAER-------ADD--KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 (236)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhh-------hcC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 11 1233444555544332 222 46799999999999999999999976
Q ss_pred -------c-ccccce---e---cccccccEEEEEeCCeeC
Q psy845 652 -------K-KSGVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~-~~~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
. ..++|+ . ..+..||+|++|++|+++
T Consensus 172 ~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~ 211 (236)
T TIGR03864 172 VAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVL 211 (236)
T ss_pred HHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEE
Confidence 1 135663 2 234569999999999974
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-32 Score=283.03 Aligned_cols=175 Identities=24% Similarity=0.366 Sum_probs=142.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc---cEEEECCEecccccHHHhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS---GQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~---G~I~IdG~dI~~l~~~~~~~ 512 (677)
-++++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++ |+|.+||.++.+.
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~------- 77 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK------- 77 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC-------
Confidence 589999999997543469999999999999999999999999999999999999998 8999999988665
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhcc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNL 590 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI 590 (677)
+...+|++++|++|++ .+++.|++||+
T Consensus 78 ---------------------------------------------------~~~~~~~~ig~v~q~~~~~~~~~tv~enl 106 (282)
T PRK13640 78 ---------------------------------------------------TVWDIREKVGIVFQNPDNQFVGATVGDDV 106 (282)
T ss_pred ---------------------------------------------------CHHHHHhheEEEEECHHHhhccCCHHHHH
Confidence 4556788899999998 46688999999
Q ss_pred ccCC---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 591 DPFG---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 591 ~~~~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
.+.. ..+. +++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~ 177 (282)
T PRK13640 107 AFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE---------PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177 (282)
T ss_pred HhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 7531 1233 3466788888887655443 4699999999999999999999976
Q ss_pred ------------ccc-ccce------ecccccccEEEEEeCCeeC
Q psy845 652 ------------KKS-GVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~-~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| ++.+..||||++|++|+++
T Consensus 178 ~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~ 222 (282)
T PRK13640 178 GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 112 5663 2334569999999999974
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=279.18 Aligned_cols=174 Identities=32% Similarity=0.440 Sum_probs=146.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc-ccHHHhhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS-VELETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~-l~~~~~~~~i 514 (677)
-++++|++|+|+++ .++|+|+|+++++||.++|+|+||||||||+++|.|++.|++|+|.+||.+++. .
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~--------- 72 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEK--------- 72 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchh---------
Confidence 47899999999887 679999999999999999999999999999999999999999999999999863 3
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~ 592 (677)
+..++|+++|+|+|+| .+|..||.|.+++
T Consensus 73 -------------------------------------------------~~~~~~~~vG~VfQnpd~q~~~~tV~~evaf 103 (235)
T COG1122 73 -------------------------------------------------SLLELRQKVGLVFQNPDDQLFGPTVEDEVAF 103 (235)
T ss_pred -------------------------------------------------hHHHhhcceEEEEECcccccccCcHHHHHhh
Confidence 6778899999999998 8999999999986
Q ss_pred CC---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
+. ..+.+| +.++++.+++.++.++ ...+||||||||+|||.+|..+|+++
T Consensus 104 g~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r---------~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~ 174 (235)
T COG1122 104 GLENLGLPREEIEERVAEALELVGLEELLDR---------PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR 174 (235)
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCchhhccC---------CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHH
Confidence 53 234443 6778889998877443 45799999999999999999999976
Q ss_pred ----------ccc-ccce---ecc---ccc-ccEEEEEeCCeeC
Q psy845 652 ----------KKS-GVNI---TRP---VTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~-~~TI---LsT---I~~-aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. +.. |||++||++|+++
T Consensus 175 ~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~ 218 (235)
T COG1122 175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL 218 (235)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe
Confidence 122 4562 332 333 9999999999974
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-32 Score=275.22 Aligned_cols=181 Identities=32% Similarity=0.471 Sum_probs=131.0
Q ss_pred cEEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc-HHHhhh
Q psy845 436 TIKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~-~~~~~~ 512 (677)
-++++|+++.|+.+. .++++||||++++||++||||+||||||||.++|+|+.+|++|+|.+||.+..... ..+.++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999998652 25999999999999999999999999999999999999999999999998775542 113455
Q ss_pred hcccccCCccc-cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 513 RLSVIPQDPVL-FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 513 ~i~~v~q~~~l-f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
.+-+|||||+- .+ +....++ .|.|=+.
T Consensus 83 ~VQmVFQDp~~SLn--------------------------------------P~~tv~~--------------~l~Epl~ 110 (252)
T COG1124 83 PVQMVFQDPYSSLN--------------------------------------PRRTVGR--------------ILSEPLR 110 (252)
T ss_pred ceeEEecCCccccC--------------------------------------cchhHHH--------------HHhhhhc
Confidence 56666666541 11 1111111 1222223
Q ss_pred cCC-CCChHHHHHHHHHccchh-hHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-----------------
Q psy845 592 PFG-RCHDTELWDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK----------------- 652 (677)
Q Consensus 592 ~~~-~~sdeeI~~Al~~a~l~e-fI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~----------------- 652 (677)
..+ +-..++++++++.+|+.+ |..+ ...+||||||||+||||||.-+|+++.
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R---------~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Il 181 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPPSFLDR---------RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHhc---------CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHH
Confidence 222 234566899999999975 3333 457899999999999999999999761
Q ss_pred ------cc--ccc---eecc---cc-cccEEEEEeCCeeC
Q psy845 653 ------KS--GVN---ITRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------~~--~~T---ILsT---I~-~aDrIlVLd~GrIV 677 (677)
.+ +-| |.|. +. -||||+||++|++|
T Consensus 182 nlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 182 NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred HHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEE
Confidence 11 224 2332 22 39999999999985
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-32 Score=263.27 Aligned_cols=143 Identities=38% Similarity=0.634 Sum_probs=125.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++.+++++|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 69 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW----------- 69 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccC-----------
Confidence 478999999976434699999999999999999999999999999999999999999999999998776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
+.+.+|++++|++|++.+|++|++||+
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~~~l------ 96 (173)
T cd03246 70 -----------------------------------------------DPNELGDHVGYLPQDDELFSGSIAENI------ 96 (173)
T ss_pred -----------------------------------------------CHHHHHhheEEECCCCccccCcHHHHC------
Confidence 556778899999999999999999998
Q ss_pred ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------c
Q psy845 597 HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------K 652 (677)
Q Consensus 597 sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~ 652 (677)
||||||||++||||++++|+++ .
T Consensus 97 ---------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 143 (173)
T cd03246 97 ---------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143 (173)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 1
Q ss_pred ccccce------ecccccccEEEEEeCCee
Q psy845 653 KSGVNI------TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 653 ~~~~TI------LsTI~~aDrIlVLd~GrI 676 (677)
.+++|| .+.+..||+|++|++|++
T Consensus 144 ~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 144 AAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred hCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 235563 223567999999999985
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-32 Score=278.22 Aligned_cols=177 Identities=30% Similarity=0.355 Sum_probs=138.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEeccc--ccHH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIAS--VELE 508 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~--l~~~ 508 (677)
.++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||+++.. .
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~--- 78 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV--- 78 (253)
T ss_pred eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc---
Confidence 48899999999753 599999999999999999999999999999999999987 49999999998852 2
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIR 587 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIr 587 (677)
+...+|++++|++|++.+|.. |++
T Consensus 79 -------------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~ 103 (253)
T PRK14267 79 -------------------------------------------------------DPIEVRREVGMVFQYPNPFPHLTIY 103 (253)
T ss_pred -------------------------------------------------------ChHHHhhceeEEecCCccCCCCcHH
Confidence 344678899999999999965 999
Q ss_pred hccccCC---CC--C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------
Q psy845 588 YNLDPFG---RC--H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------- 651 (677)
Q Consensus 588 ENI~~~~---~~--s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------- 651 (677)
||+.+.. .. + ++++.++++..++.+.+.. ..+. ...+||||||||++||||++++|+++
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 178 (253)
T PRK14267 104 DNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD---RLND--YPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178 (253)
T ss_pred HHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh---hhcc--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 9996421 11 1 2345667777777554432 1222 56799999999999999999999976
Q ss_pred ----------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ----------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|+ .| .+. .||||++|++|+++
T Consensus 179 ~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 227 (253)
T PRK14267 179 NIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227 (253)
T ss_pred cCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 1234562 22 233 49999999999974
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-32 Score=284.15 Aligned_cols=179 Identities=26% Similarity=0.382 Sum_probs=138.6
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
++++|++++|++.+ .++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+||+++.....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~------ 76 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK------ 76 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccc------
Confidence 78999999997532 369999999999999999999999999999999999999999999999999854200
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
..+....|++++||+|+| .+|+.|++||+.
T Consensus 77 ------------------------------------------------~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~ 108 (290)
T PRK13634 77 ------------------------------------------------NKKLKPLRKKVGIVFQFPEHQLFEETVEKDIC 108 (290)
T ss_pred ------------------------------------------------cchHHHHHhhEEEEeeCchhhhhhhhHHHHHH
Confidence 004556788899999987 688899999996
Q ss_pred cCC---CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PFG---RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~~---~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
++. ..+.+ .+.++++.+++++.. .++ ...+||||||||++||||++.+|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~--~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 109 FGPMNFGVSEEDAKQKAREMIELVGLPEEL------LAR--SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 432 12332 345566677664221 122 46799999999999999999999976
Q ss_pred -----------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .+.|| .|. + +.||||++|++|+++
T Consensus 181 ~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 181 RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225 (290)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 222 2 349999999999974
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-32 Score=280.34 Aligned_cols=175 Identities=27% Similarity=0.432 Sum_probs=139.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~---------- 76 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDD---------- 76 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----------
Confidence 4899999999976434699999999999999999999999999999999999999999999999988765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--ccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LFsgTIrENI~~~ 593 (677)
+...+|++++|++|++. ++..|+++|+.+.
T Consensus 77 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~ 108 (269)
T PRK13648 77 ------------------------------------------------NFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG 108 (269)
T ss_pred ------------------------------------------------CHHHHHhheeEEEeChHHhcccccHHHHHHhh
Confidence 55667888889999874 4456789998643
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ... ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 179 (269)
T PRK13648 109 LENHAVPYDEMHRRVSEALKQVDMLERADY---------EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179 (269)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 111 2345667777777654322 45799999999999999999999976
Q ss_pred -------c--cc-ccce---e---cccccccEEEEEeCCeeC
Q psy845 652 -------K--KS-GVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~--~~-~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
. .+ ++|| . ..+..||||++|++|+++
T Consensus 180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~ 221 (269)
T PRK13648 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVY 221 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEE
Confidence 1 12 5663 2 234469999999999974
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=277.48 Aligned_cols=172 Identities=24% Similarity=0.397 Sum_probs=138.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML----------- 69 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC-----------
Confidence 789999999975 3699999999999999999999999999999999999999999999999988766
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+..++|+.++|+||++.++.+ |++||++++..
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~ 102 (255)
T PRK11231 70 -----------------------------------------------SSRQLARRLALLPQHHLTPEGITVRELVAYGRS 102 (255)
T ss_pred -----------------------------------------------CHHHHhhheEEecccCCCCCCccHHHHHHhccc
Confidence 555677889999999988865 99999975310
Q ss_pred -----------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 596 -----------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 596 -----------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
..++++.++++..++.+...+ ....||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 103 PWLSLWGRLSAEDNARVNQAMEQTRINHLADR---------RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 112346667777777644332 45799999999999999999999976
Q ss_pred -----------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||+|++|++|+++
T Consensus 174 ~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 174 QVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM 217 (255)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE
Confidence 1135663 232 3 349999999999974
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-32 Score=272.86 Aligned_cols=171 Identities=26% Similarity=0.391 Sum_probs=135.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 67 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE----------- 67 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999876442
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+ ..+|++++|+||++.++. .|++||+.+..
T Consensus 68 -----------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (220)
T cd03265 68 -----------------------------------------------P-REVRRRIGIVFQDLSVDDELTGWENLYIHAR 99 (220)
T ss_pred -----------------------------------------------h-HHHhhcEEEecCCccccccCcHHHHHHHHHH
Confidence 2 356778899999988886 49999996421
Q ss_pred --CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.. .++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (220)
T cd03265 100 LYGVPGAERRERIDELLDFVGLLEAADR---------LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 11 13356677788777655433 34689999999999999999999976
Q ss_pred -------ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ ++|+ .|. + ..||||++|++|+++
T Consensus 171 ~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211 (220)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 112 5663 332 2 249999999999974
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-32 Score=296.94 Aligned_cols=173 Identities=25% Similarity=0.393 Sum_probs=144.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+.
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~---------- 70 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL---------- 70 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcC----------
Confidence 3889999999975 3699999999999999999999999999999999999999999999999998877
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~ 594 (677)
+.+++|++++||+|++.+ |+.|++||+.++.
T Consensus 71 ------------------------------------------------~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~ 102 (402)
T PRK09536 71 ------------------------------------------------SARAASRRVASVPQDTSLSFEFDVRQVVEMGR 102 (402)
T ss_pred ------------------------------------------------CHHHHhcceEEEccCCCCCCCCCHHHHHHhcc
Confidence 667788889999999888 5889999996532
Q ss_pred -----------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 -----------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 -----------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
...++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~---------~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~ 173 (402)
T PRK09536 103 TPHRSRFDTWTETDRAAVERAMERTGVAQFADR---------PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173 (402)
T ss_pred chhcccccCCCHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 1123457888999998776543 35799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 174 ~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv 218 (402)
T PRK09536 174 HQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR 218 (402)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1245663 22 23 459999999999974
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-32 Score=275.08 Aligned_cols=178 Identities=25% Similarity=0.313 Sum_probs=135.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++....
T Consensus 3 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 70 (242)
T PRK11124 3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSK---------- 70 (242)
T ss_pred EEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----------
Confidence 7899999999753 6999999999999999999999999999999999999999999999999873110
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
.....+...+|++++|+||++.+|. .|++||+..+.
T Consensus 71 ------------------------------------------~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 71 ------------------------------------------TPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred ------------------------------------------ccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 0000034567889999999999996 49999996311
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ .+++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~ 179 (242)
T PRK11124 109 RVLGLSKDQALARAEKLLERLRLKPYADR---------FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 (242)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHH
Confidence 112 2234555666665544333 34689999999999999999999976
Q ss_pred --------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + ..||||++|++|+++
T Consensus 180 l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1135663 222 3 249999999999974
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-32 Score=278.23 Aligned_cols=169 Identities=29% Similarity=0.385 Sum_probs=137.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++|++|+|.++ +||+||||++++||.+||+||||||||||+|+++|+..|++|+|.++|.+.++.
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~---------- 71 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR---------- 71 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc----------
Confidence 58999999999865 499999999999999999999999999999999999999999999999887665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc---cccccchhhcccc
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP---VLFNGTIRYNLDP 592 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~---~LFsgTIrENI~~ 592 (677)
.. +.+||||||.. .-|.-|++|=+..
T Consensus 72 ------------------------------------------------~~---~~~IgYVPQ~~~~d~~fP~tV~d~V~~ 100 (254)
T COG1121 72 ------------------------------------------------RK---RLRIGYVPQKSSVDRSFPITVKDVVLL 100 (254)
T ss_pred ------------------------------------------------cc---CCeEEEcCcccccCCCCCcCHHHHHHc
Confidence 10 35677777744 3467889988754
Q ss_pred CC--------C---CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 593 FG--------R---CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 593 ~~--------~---~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+. . .+.+++.+|++.+|+.++..+ +-.+|||||+||+.|||||+++|+++
T Consensus 101 g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r---------~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD 171 (254)
T COG1121 101 GRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR---------QIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171 (254)
T ss_pred cCcccccccccccHHHHHHHHHHHHHcCchhhhCC---------cccccCcHHHHHHHHHHHhccCCCEEEecCCcccCC
Confidence 32 1 124789999999999988654 45799999999999999999999976
Q ss_pred --------------cccccce------eccc-ccccEEEEEeCCee
Q psy845 652 --------------KKSGVNI------TRPV-TSCDKVLVMDNGQA 676 (677)
Q Consensus 652 --------------~~~~~TI------LsTI-~~aDrIlVLd~GrI 676 (677)
..+|+|| ++.+ +.||+|+.|++..+
T Consensus 172 ~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~ 217 (254)
T COG1121 172 VAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE
Confidence 2348884 3344 45999999987543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-32 Score=273.49 Aligned_cols=172 Identities=28% Similarity=0.463 Sum_probs=132.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 67 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL----------- 67 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
+.+. .|+.++|++|++.+|.+ |++||+.+..
T Consensus 68 -----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 100 (232)
T cd03218 68 -----------------------------------------------PMHKRARLGIGYLPQEASIFRKLTVEENILAVL 100 (232)
T ss_pred -----------------------------------------------CHhHHHhccEEEecCCccccccCcHHHHHHHHH
Confidence 3323 35679999999998876 9999996421
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
.... +++.++++..++.+.. ++ ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 171 (232)
T cd03218 101 EIRGLSKKEREEKLEELLEEFHITHLR-------KS--KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171 (232)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhh-------hC--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 1111 2234445555443322 11 46799999999999999999999976
Q ss_pred --------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. .+.||+|++|++|+++
T Consensus 172 ~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 172 IQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL 212 (232)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 1235563 232 2349999999999973
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=271.82 Aligned_cols=169 Identities=25% Similarity=0.299 Sum_probs=132.9
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++|++++|++.. +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--------- 71 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP--------- 71 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc---------
Confidence 46899999997521 3699999999999999999999999999999999999999999999999876432
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+++++||||++.+|. .|++||+.+.
T Consensus 72 ------------------------------------------------------~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (220)
T cd03293 72 ------------------------------------------------------GPDRGYVFQQDALLPWLTVLDNVALG 97 (220)
T ss_pred ------------------------------------------------------cCcEEEEecccccccCCCHHHHHHHH
Confidence 456888888888886 6999998642
Q ss_pred C---CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. .. .++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 168 (220)
T cd03293 98 LELQGVPKAEARERAEELLELVGLSGFENA---------YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168 (220)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHH
Confidence 1 11 13456677777777655443 34689999999999999999999976
Q ss_pred -------c--c-cccce---ecc---c-ccccEEEEEe--CCeeC
Q psy845 652 -------K--K-SGVNI---TRP---V-TSCDKVLVMD--NGQAL 677 (677)
Q Consensus 652 -------~--~-~~~TI---LsT---I-~~aDrIlVLd--~GrIV 677 (677)
. . .++|| .|. + +.||+|++|+ +|+++
T Consensus 169 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~ 213 (220)
T cd03293 169 QLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE
Confidence 1 1 25663 222 2 3499999999 79974
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-32 Score=281.31 Aligned_cols=175 Identities=23% Similarity=0.329 Sum_probs=141.7
Q ss_pred cEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 436 TIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
-++++||+++|++. ..++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~--------- 74 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE--------- 74 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC---------
Confidence 48899999999753 24599999999999999999999999999999999999999999999999988665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~ 592 (677)
+...+|++++|++|++ .+++.|+.||+.+
T Consensus 75 -------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~ 105 (277)
T PRK13642 75 -------------------------------------------------NVWNLRRKIGMVFQNPDNQFVGATVEDDVAF 105 (277)
T ss_pred -------------------------------------------------CHHHHhcceEEEEECHHHhhccCCHHHHHHh
Confidence 4556788999999997 4678899999974
Q ss_pred CC---CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
+. ..+++ ++.++++.+++.++..+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~ 176 (277)
T PRK13642 106 GMENQGIPREEMIKRVDEALLAVNMLDFKTR---------EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176 (277)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 31 22333 34667777787665433 35689999999999999999999976
Q ss_pred ----------ccc-ccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----------KKS-GVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~-~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| +..+..||+|++|++|+++
T Consensus 177 ~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~ 219 (277)
T PRK13642 177 QEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEII 219 (277)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 112 6673 2334569999999999974
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-32 Score=285.01 Aligned_cols=190 Identities=25% Similarity=0.304 Sum_probs=140.5
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
|+++||+++|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++....
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~------- 75 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKK------- 75 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccc-------
Confidence 78999999997542 25999999999999999999999999999999999999999999999998763210
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhcccccc--ccccchhh------hhHHHHhhhcccccccc--cccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK--IDDFDIAS------VELETLRSRLSVIPQDP--VLFN 583 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~------~~~~~LR~~I~~V~Qd~--~LFs 583 (677)
..|+|- +.+.+++. .+...+|+++|||+|+| .+|.
T Consensus 76 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~ 120 (305)
T PRK13651 76 -----------------------------------KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE 120 (305)
T ss_pred -----------------------------------ccccccccccccccccccccccchHHHHHhceEEEeeCccccccc
Confidence 000000 00111111 13557889999999986 7888
Q ss_pred cchhhccccCC---CCCh----HHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----
Q psy845 584 GTIRYNLDPFG---RCHD----TELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---- 651 (677)
Q Consensus 584 gTIrENI~~~~---~~sd----eeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---- 651 (677)
.|++|||.++. ..+. +++.++++..++. ++..+ ...+||||||||++||||++.+|+++
T Consensus 121 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~~LSgGqkqrvalA~aL~~~P~lLlLDE 191 (305)
T PRK13651 121 QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR---------SPFELSGGQKRRVALAGILAMEPDFLVFDE 191 (305)
T ss_pred ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99999997542 1222 3456677777764 33221 45799999999999999999999976
Q ss_pred --------------------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
...++|| .|.. +.||||+||++|+++
T Consensus 192 Pt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~ 244 (305)
T PRK13651 192 PTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII 244 (305)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 3322 459999999999974
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-32 Score=286.47 Aligned_cols=173 Identities=34% Similarity=0.484 Sum_probs=136.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.+.
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~--------- 74 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR--------- 74 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc---------
Confidence 36999999999975 3699999999999999999999999999999999999999999999999998654
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+ ...|+++||+||++.+|. .|++||+.+.
T Consensus 75 -------------------------------------------------~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~ 104 (306)
T PRK13537 75 -------------------------------------------------A-RHARQRVGVVPQFDNLDPDFTVRENLLVF 104 (306)
T ss_pred -------------------------------------------------h-HHHHhcEEEEeccCcCCCCCcHHHHHHHH
Confidence 2 346888999999998885 7999999743
Q ss_pred CC---CChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 GR---CHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~~---~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
+. .++. ++.++++..++.+ ..++. ..+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~--~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~ 175 (306)
T PRK13537 105 GRYFGLSAAAARALVPPLLEFAKLEN-------KADAK--VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175 (306)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCc--hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHH
Confidence 21 2222 2344555555543 34443 3589999999999999999999976
Q ss_pred ---------cccccce-e--c---ccc-cccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI-T--R---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI-L--s---TI~-~aDrIlVLd~GrIV 677 (677)
..+|+|| + | .+. -||||++|++|+++
T Consensus 176 ~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~ 217 (306)
T PRK13537 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI 217 (306)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 1236674 2 2 233 39999999999974
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-32 Score=273.96 Aligned_cols=174 Identities=28% Similarity=0.415 Sum_probs=136.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 69 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPK---------- 69 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC----------
Confidence 679999999975 36999999999999999999999999999999999999999999999999886530
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
.+...+|++++|++|++.+|. .|++||+.+..
T Consensus 70 ----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 103 (240)
T PRK09493 70 ----------------------------------------------VDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL 103 (240)
T ss_pred ----------------------------------------------hhHHHHhhceEEEecccccCCCCcHHHHHHhHHH
Confidence 034567888999999998885 69999996421
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 104 RVRGASKEEAEKQARELLAKVGLAERAHH---------YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChHHHhc---------ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 111 1234455666555443322 45789999999999999999999976
Q ss_pred --------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + ..||||++|++|+++
T Consensus 175 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (240)
T PRK09493 175 VLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215 (240)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1135663 232 3 349999999999974
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-32 Score=268.33 Aligned_cols=168 Identities=24% Similarity=0.352 Sum_probs=134.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. . .|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~----------- 65 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA----------- 65 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC-----------
Confidence 4789999999743 2 399999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+. .|+.++|++|++.+|.+ |++||+.+...
T Consensus 66 -----------------------------------------------~~--~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 96 (211)
T cd03298 66 -----------------------------------------------PP--ADRPVSMLFQENNLFAHLTVEQNVGLGLS 96 (211)
T ss_pred -----------------------------------------------CH--hHccEEEEecccccCCCCcHHHHHhcccc
Confidence 22 24679999999998864 99999964321
Q ss_pred -------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 596 -------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 596 -------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..++++.++++..++.+...+. ..+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l 167 (211)
T cd03298 97 PGLKLTAEDRQAIEVALARVGLAGLEKRL---------PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM 167 (211)
T ss_pred cccCccHHHHHHHHHHHHHcCCHHHHhCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1244677888888887665543 3589999999999999999999976
Q ss_pred -------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + +-||||++|++|+++
T Consensus 168 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 168 LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 11 25663 232 3 339999999999974
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-32 Score=279.02 Aligned_cols=173 Identities=24% Similarity=0.325 Sum_probs=139.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 78 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW---------- 78 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhC----------
Confidence 58999999999753 699999999999999999999999999999999999999999999999988766
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+..++|+.++|++|++.++. .|++||+.+..
T Consensus 79 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (265)
T PRK10575 79 ------------------------------------------------SSKAFARKVAYLPQQLPAAEGMTVRELVAIGR 110 (265)
T ss_pred ------------------------------------------------CHHHHhhheEEeccCCCCCCCccHHHHHHhCc
Confidence 55567788999999876664 49999996421
Q ss_pred -----------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 -----------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 -----------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
...++++.++++.+++.++..+ ...+||||||||++||||++.+|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~ 181 (265)
T PRK10575 111 YPWHGALGRFGAADREKVEEAISLVGLKPLAHR---------LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181 (265)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHHhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 0123456778888887655433 24589999999999999999999976
Q ss_pred ------------ccc-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKS-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .| .+ +.||+|++|++|+++
T Consensus 182 ~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 182 HQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 (265)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 112 5663 22 23 359999999999974
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=274.92 Aligned_cols=177 Identities=31% Similarity=0.406 Sum_probs=140.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~----- 75 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM----- 75 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC-----
Confidence 48899999999753 599999999999999999999999999999999999984 699999999998766
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYN 589 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrEN 589 (677)
+...+|++++|++|++.+| +.|++||
T Consensus 76 -----------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~en 102 (250)
T PRK14247 76 -----------------------------------------------------DVIELRRRVQMVFQIPNPIPNLSIFEN 102 (250)
T ss_pred -----------------------------------------------------CHHHHhccEEEEeccCccCCCCcHHHH
Confidence 5556788899999998755 6799999
Q ss_pred cccCC---C--CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 590 LDPFG---R--CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 590 I~~~~---~--~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
+.+.. . .. ++++.++++..++.+.+.. .+++ ...+||||||||++||||++++|+++
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~--~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~L 177 (250)
T PRK14247 103 VALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDA--PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177 (250)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 96421 1 11 2456778888887654432 2333 45799999999999999999999976
Q ss_pred --------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||+|++|++|+++
T Consensus 178 D~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14247 178 DPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV 224 (250)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE
Confidence 1234562 222 3 359999999999973
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=268.81 Aligned_cols=177 Identities=29% Similarity=0.405 Sum_probs=132.1
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|++.. .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~------ 75 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR------ 75 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchh------
Confidence 68999999997531 2699999999999999999999999999999999999999999999999998765100
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--ccc-ccchhhccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLF-NGTIRYNLD 591 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LF-sgTIrENI~ 591 (677)
....+|++++|++|++ .++ ..|++||+.
T Consensus 76 -------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~ 106 (228)
T cd03257 76 -------------------------------------------------LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA 106 (228)
T ss_pred -------------------------------------------------hHHHhhccEEEEecCchhhcCCcCCHHHHHH
Confidence 1346788899999998 344 579999995
Q ss_pred cC----C-CCChHHH----HHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 592 PF----G-RCHDTEL----WDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 592 ~~----~-~~sdeeI----~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+. + ...+++. .++++..++. +.. +. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~--~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 107 EPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVL-------NR--YPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHCCCChhHh-------hC--CchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 32 1 1111111 1334444432 111 11 46789999999999999999999976
Q ss_pred --------------ccc-ccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 --------------KKS-GVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~-~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. +. .||+|++|++|+++
T Consensus 178 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 178 VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 112 5673 232 33 59999999999974
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-32 Score=275.96 Aligned_cols=185 Identities=24% Similarity=0.393 Sum_probs=139.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++-
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~--------- 69 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPG--------- 69 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc---------
Confidence 578999999975 369999999999999999999999999999999999999999999999998865410
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
| +|+. ......+...+|+.++|++|++.+|. .|++||+....
T Consensus 70 --~------------------------------~~~~----~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~ 113 (252)
T TIGR03005 70 --R------------------------------NGPL----VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPV 113 (252)
T ss_pred --c------------------------------cccc----cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHH
Confidence 0 0000 00000034567889999999999884 79999996421
Q ss_pred ---CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
.. .++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~ 184 (252)
T TIGR03005 114 LVLGMARAEAEKRAMELLDMVGLADKADH---------MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184 (252)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhHhhc---------ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11 12345667777776655433 34689999999999999999999976
Q ss_pred --------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .| .+ ..|||+++|++|+++
T Consensus 185 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 11 25663 22 23 349999999999974
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=278.05 Aligned_cols=181 Identities=25% Similarity=0.355 Sum_probs=142.5
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~ 508 (677)
.+.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~-- 92 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR-- 92 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc--
Confidence 457999999999975 3699999999999999999999999999999999999975 8999999999875420
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
.+...+|+.++|++|++.+|+.|++|
T Consensus 93 ------------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~e 118 (267)
T PRK14235 93 ------------------------------------------------------LDVVELRARVGMVFQKPNPFPKSIYE 118 (267)
T ss_pred ------------------------------------------------------cchHHHhhceEEEecCCCCCCCcHHH
Confidence 03456788999999999999889999
Q ss_pred ccccCC---CC--C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 589 NLDPFG---RC--H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 589 NI~~~~---~~--s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
|+.+.. .. + ++++.++++..++.+++... ++. .+.+||||||||++||||++++|+++
T Consensus 119 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 193 (267)
T PRK14235 119 NVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDR---LHE--PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193 (267)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHH---hhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC
Confidence 996421 11 1 23467788888886544321 122 46799999999999999999999976
Q ss_pred ---------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.|||+++|++|+++
T Consensus 194 LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 194 LDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV 241 (267)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 1134563 22 23 348999999999974
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=274.49 Aligned_cols=180 Identities=28% Similarity=0.391 Sum_probs=139.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~ 509 (677)
|.++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~--- 76 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD--- 76 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc---
Confidence 468999999999753 599999999999999999999999999999999999863 6999999999875420
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|+.++|++|++.+|+.|++||
T Consensus 77 -----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~t~~~n 103 (250)
T PRK14240 77 -----------------------------------------------------IDVNQLRKRVGMVFQQPNPFPMSIYDN 103 (250)
T ss_pred -----------------------------------------------------cchHHHhccEEEEecCCccCcccHHHH
Confidence 044567889999999999999999999
Q ss_pred cccCC---CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. .. .++++.++++.+++.+.+... .+. .+.+||||||||++||||++++|+++
T Consensus 104 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 178 (250)
T PRK14240 104 VAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR---LKK--SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178 (250)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHH---Hhc--CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 96432 11 134456667777765444321 222 46799999999999999999999976
Q ss_pred -------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +.||||++|++|+++
T Consensus 179 ~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~ 224 (250)
T PRK14240 179 PISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV 224 (250)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEE
Confidence 1234563 232 3 349999999999974
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=279.65 Aligned_cols=173 Identities=23% Similarity=0.350 Sum_probs=139.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 71 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE----------- 71 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC-----------
Confidence 7899999999644 3599999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~~ 594 (677)
+.+.+++.++||+|++ .+|+.|++||+.+..
T Consensus 72 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~ 104 (277)
T PRK13652 72 -----------------------------------------------NIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGP 104 (277)
T ss_pred -----------------------------------------------CHHHHHhheEEEecCcccccccccHHHHHHhHH
Confidence 4556788899999997 477889999996421
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+. +++.++++..++.++..+ ....||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 105 INLGLDEETVAHRVSSALHMLGLEELRDR---------VPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhHhcC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1222 345677777777665443 34689999999999999999999976
Q ss_pred --------ccc-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 --------KKS-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .| .+ +.||||++|++|+++
T Consensus 176 l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~ 217 (277)
T PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 112 5673 22 33 459999999999974
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=269.53 Aligned_cols=177 Identities=27% Similarity=0.356 Sum_probs=140.4
Q ss_pred EEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++|++++|+++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~------ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEK------ 75 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHh------
Confidence 6899999999753 14699999999999999999999999999999999999999999999999988665100
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
..+..|+.++|+||++.+|. .|+.||+.+.
T Consensus 76 -------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~ 106 (220)
T TIGR02982 76 -------------------------------------------------ELVQLRRNIGYIFQAHNLLGFLTARQNVQMA 106 (220)
T ss_pred -------------------------------------------------HHHHHHhheEEEcCChhhcCCCCHHHHHHHH
Confidence 23356889999999999987 7999999643
Q ss_pred C----CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 594 G----RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 594 ~----~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
. ..+. +++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 177 (220)
T TIGR02982 107 LELQPNLSYQEARERARAMLEAVGLGDHLDYY---------PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 (220)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCChhhhhcC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 2 1222 2456677777776655443 4689999999999999999999976
Q ss_pred ---------cc--cccce------ecccccccEEEEEeCCeeC
Q psy845 652 ---------KK--SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~--~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .+....||+|++|++|++.
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~~ 220 (220)
T TIGR02982 178 RDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKLL 220 (220)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEEC
Confidence 11 25663 2334569999999999974
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=275.07 Aligned_cols=179 Identities=25% Similarity=0.372 Sum_probs=139.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||+++.+.+
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~---- 77 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK---- 77 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc----
Confidence 4899999999975 369999999999999999999999999999999999997 48999999999875320
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|+.++|++|++.+|+.|++||+
T Consensus 78 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~enl 105 (251)
T PRK14251 78 ----------------------------------------------------MDLVELRKEVGMVFQQPTPFPFSVYDNV 105 (251)
T ss_pred ----------------------------------------------------chHHHhhccEEEEecCCccCCCcHHHHH
Confidence 0445678899999999999999999999
Q ss_pred ccCC---CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+.. .. .++++.++++..++++.. ++.++. .+.+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~--~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~ 180 (251)
T PRK14251 106 AYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLDR--NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180 (251)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhcc--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCH
Confidence 6431 11 123456677777775322 122233 56799999999999999999999976
Q ss_pred ------------cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..++.|| .|. +. .||||++|++|+++
T Consensus 181 ~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14251 181 ISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI 225 (251)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEE
Confidence 1234562 232 23 48999999999974
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=289.09 Aligned_cols=171 Identities=25% Similarity=0.327 Sum_probs=138.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|++. .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 2 ~L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~---------- 69 (353)
T PRK10851 2 SIEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL---------- 69 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----------
Confidence 37899999999753 599999999999999999999999999999999999999999999999988665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+. .|++++||+|++.+|. .|++||+.+..
T Consensus 70 ------------------------------------------------~~--~~r~i~~v~Q~~~l~p~~tv~eni~~~~ 99 (353)
T PRK10851 70 ------------------------------------------------HA--RDRKVGFVFQHYALFRHMTVFDNIAFGL 99 (353)
T ss_pred ------------------------------------------------CH--HHCCEEEEecCcccCCCCcHHHHHHhhh
Confidence 22 3567999999999985 69999997532
Q ss_pred C-------CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 R-------CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 ~-------~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
. .+ ++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~---------~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~ 170 (353)
T PRK10851 100 TVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR---------YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170 (353)
T ss_pred hhcccccCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 1 12 2356677888887665443 34689999999999999999999976
Q ss_pred ------------ccc-ccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ------------KKS-GVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~-~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+ ++|+ .|.. +-||||+||++|+++
T Consensus 171 ~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 171 VRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5562 3332 349999999999984
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=275.57 Aligned_cols=172 Identities=24% Similarity=0.349 Sum_probs=137.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 68 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGL----------- 68 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccC-----------
Confidence 789999999975 3699999999999999999999999999999999999999999999999998776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~- 594 (677)
+.+.+|+.++|++|++.+ +..|++||+.++.
T Consensus 69 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 101 (256)
T TIGR03873 69 -----------------------------------------------SRRARARRVALVEQDSDTAVPLTVRDVVALGRI 101 (256)
T ss_pred -----------------------------------------------CHHHHhhheEEecccCccCCCCCHHHHHHhcch
Confidence 555677788999999854 5689999996431
Q ss_pred ---C-------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 595 ---R-------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 595 ---~-------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+ ..++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 102 PHRSLWAGDSPHDAAVVDRALARTELSHLADR---------DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 0 012346667777776544322 46799999999999999999999876
Q ss_pred -----------cccccce---e---ccc-ccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI---T---RPV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---L---sTI-~~aDrIlVLd~GrIV 677 (677)
..++.|| . +.+ +.||||++|++|+++
T Consensus 173 ~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (256)
T TIGR03873 173 QLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV 216 (256)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE
Confidence 1135563 2 234 459999999999974
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=274.07 Aligned_cols=179 Identities=25% Similarity=0.326 Sum_probs=138.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC--CC---CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV--EL---SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y--~p---~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|++ .| ++|+|.+||+++.+.+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~---- 78 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR---- 78 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc----
Confidence 48999999999753 6999999999999999999999999999999999995 46 5999999999875430
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|+.++||||++.+|+.|++||+
T Consensus 79 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 106 (252)
T PRK14239 79 ----------------------------------------------------TDTVDLRKEIGMVFQQPNPFPMSIYENV 106 (252)
T ss_pred ----------------------------------------------------cchHhhhhcEEEEecCCccCcCcHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccC----CCC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPF----GRC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~----~~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+. +.. .++++.++++.+++.+.+... .+. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 181 (252)
T PRK14239 107 VYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDR---LHD--SALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDP 181 (252)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHH---Hhc--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 642 111 123455677777775544321 122 56799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 182 ~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14239 182 ISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI 226 (252)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1134563 22 23 349999999999974
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=276.61 Aligned_cols=181 Identities=23% Similarity=0.317 Sum_probs=142.2
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~ 508 (677)
...|+++||+++|++ +++|+|+||++++||.+||+||||||||||+++|+|+++ |++|+|.+||.++.+.+
T Consensus 18 ~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~-- 93 (267)
T PRK14237 18 EIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE-- 93 (267)
T ss_pred CeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc--
Confidence 346999999999964 369999999999999999999999999999999999997 58999999999875320
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
.+...+|+.++|+||++.+|.+|++|
T Consensus 94 ------------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~e 119 (267)
T PRK14237 94 ------------------------------------------------------INVYEMRKHIGMVFQRPNPFAKSIYE 119 (267)
T ss_pred ------------------------------------------------------CChHHHhcceEEEecCCccccccHHH
Confidence 04556788999999999999999999
Q ss_pred ccccCC---CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 589 NLDPFG---RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 589 NI~~~~---~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
|+.... .. .++++.++++..++.+++... .+. .+.+||||||||++||||++++|+++
T Consensus 120 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~--~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~L 194 (267)
T PRK14237 120 NITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDD---LHK--SALTLSGGQQQRLCIARAIAVKPDILLMDEPASAL 194 (267)
T ss_pred HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhh---hcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 997521 11 123466678888876655322 122 56799999999999999999999976
Q ss_pred --------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..++.|| .| .+ ..||||++|++|+++
T Consensus 195 D~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 195 DPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI 241 (267)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 1234552 22 23 349999999999974
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-32 Score=269.70 Aligned_cols=165 Identities=30% Similarity=0.425 Sum_probs=129.0
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-------------- 64 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-------------- 64 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--------------
Confidence 36799999975 35999999999999999999999999999999999999999999999997642
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc---cccchhhccccCC
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL---FNGTIRYNLDPFG 594 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L---FsgTIrENI~~~~ 594 (677)
.+|++++|++|++.+ ++.|++||+....
T Consensus 65 -------------------------------------------------~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~ 95 (213)
T cd03235 65 -------------------------------------------------KERKRIGYVPQRRSIDRDFPISVRDVVLMGL 95 (213)
T ss_pred -------------------------------------------------HHHhheEEeccccccccCCCCcHHHHHHhcc
Confidence 245677888888766 5679999986421
Q ss_pred C-----------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 R-----------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 ~-----------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
. ..++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 166 (213)
T cd03235 96 YGHKGLFRRLSKADKAKVDEALERVGLSELADR---------QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166 (213)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHHHhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 112456677788777655433 35689999999999999999999976
Q ss_pred ------------cccccce---ec---ccc-cccEEEEEeCCee
Q psy845 652 ------------KKSGVNI---TR---PVT-SCDKVLVMDNGQA 676 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrI 676 (677)
..+++|+ .| .+. -||+|++|++|.+
T Consensus 167 ~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 167 TQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 1145562 22 233 4899999999854
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-32 Score=290.94 Aligned_cols=172 Identities=27% Similarity=0.388 Sum_probs=140.1
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc--cEEEECCEecccccHHHhhh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS--GQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~--G~I~IdG~dI~~l~~~~~~~ 512 (677)
++++++||+++|++. .+|+|+||++++||.+||+||||||||||+++|+|+++|++ |+|.+||.++.+.
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~------- 74 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA------- 74 (362)
T ss_pred eEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC-------
Confidence 579999999999753 59999999999999999999999999999999999999999 9999999988665
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
+. .+++++||+|++.+|. .|++||+.
T Consensus 75 ---------------------------------------------------~~--~~r~ig~vfQ~~~l~p~~tv~enl~ 101 (362)
T TIGR03258 75 ---------------------------------------------------PP--HKRGLALLFQNYALFPHLKVEDNVA 101 (362)
T ss_pred ---------------------------------------------------CH--HHCCEEEEECCcccCCCCcHHHHHH
Confidence 32 2567899999999985 59999997
Q ss_pred cCC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PFG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
++- ..+ ++++.++++..++.++..+. ..+||||||||+||||||+++|+++
T Consensus 102 ~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~---------~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~ 172 (362)
T TIGR03258 102 FGLRAQKMPKADIAERVADALKLVGLGDAAAHL---------PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANI 172 (362)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 531 222 23466778888887766554 4689999999999999999999976
Q ss_pred -----------ccc--ccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -----------KKS--GVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~--~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+ +.|+ .|.. +-||||+||++|+++
T Consensus 173 r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 173 RANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218 (362)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5673 3322 349999999999984
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=291.33 Aligned_cols=172 Identities=26% Similarity=0.397 Sum_probs=140.4
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++|++++|++ ..+|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~--------- 81 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV--------- 81 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---------
Confidence 35999999999975 3599999999999999999999999999999999999999999999999998765
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+.. +++++||+|++.|| +.|++||+.++
T Consensus 82 -------------------------------------------------~~~--~r~ig~vfQ~~~lfp~ltv~eNi~~~ 110 (375)
T PRK09452 82 -------------------------------------------------PAE--NRHVNTVFQSYALFPHMTVFENVAFG 110 (375)
T ss_pred -------------------------------------------------CHH--HCCEEEEecCcccCCCCCHHHHHHHH
Confidence 322 46789999999898 45999999753
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
- ..+ ++++.++++..++.++..+.| .+||||||||+||||||+++|+++
T Consensus 111 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p---------~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~ 181 (375)
T PRK09452 111 LRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRK 181 (375)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 2 122 235677888888887766544 589999999999999999999976
Q ss_pred ---------cc-cccc-e--ecc----cccccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVN-I--TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~T-I--LsT----I~~aDrIlVLd~GrIV 677 (677)
.. .+.| | .|. ..-||||+||++|+++
T Consensus 182 ~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 182 QMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 2556 2 332 2349999999999984
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-32 Score=268.55 Aligned_cols=168 Identities=23% Similarity=0.431 Sum_probs=130.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++..
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------------ 66 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI------------ 66 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH------------
Confidence 478999999974 369999999999999999999999999999999999999999999999976521
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
..|++++|++|++.+|. .|++||+.+..
T Consensus 67 --------------------------------------------------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 96 (210)
T cd03269 67 --------------------------------------------------AARNRIGYLPEERGLYPKMKVIDQLVYLAQ 96 (210)
T ss_pred --------------------------------------------------HHHccEEEeccCCcCCcCCcHHHHHHHHHH
Confidence 34667888888888886 49999986421
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~ 167 (210)
T cd03269 97 LKGLKKEEARRRIDEWLERLELSEYANK---------RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL 167 (210)
T ss_pred HcCCChHHHHHHHHHHHHHcCChHHHhC---------cHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 111 2345556666666544322 45789999999999999999999976
Q ss_pred -------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +-||+|++|++|+++
T Consensus 168 ~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 168 KDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 1135563 22 23 349999999999974
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=279.62 Aligned_cols=179 Identities=25% Similarity=0.369 Sum_probs=136.7
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
++++||+++|+++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++...+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~------ 76 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSK------ 76 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc------
Confidence 78999999997532 359999999999999999999999999999999999999999999999998865300
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
..+.+.+|+.++|+||++ .+|+.|++||+.
T Consensus 77 ------------------------------------------------~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~ 108 (280)
T PRK13649 77 ------------------------------------------------NKDIKQIRKKVGLVFQFPESQLFEETVLKDVA 108 (280)
T ss_pred ------------------------------------------------ccCHHHHHhheEEEeeChhhhhccccHHHHHH
Confidence 003456788999999997 688899999996
Q ss_pred cCC---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PFG---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~~---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+.. ..+.++ +.++++..++.+.. .+. ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~--~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 109 FGPQNFGVSQEEAEALAREKLALVGISESL------FEK--NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhh------hhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 421 122322 33445555553211 111 56799999999999999999999976
Q ss_pred -----------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...++|| .|. + +-||+|++|++|+++
T Consensus 181 ~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 181 RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE
Confidence 1135663 222 3 348999999999974
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=278.50 Aligned_cols=176 Identities=27% Similarity=0.394 Sum_probs=141.4
Q ss_pred cEEEEeeeEEeCCC----CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhh
Q psy845 436 TIKFKNVSLRYRDN----WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 436 ~I~fknVsFsY~~~----~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
-++++|++++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~----- 78 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE----- 78 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc-----
Confidence 48999999999742 246999999999999999999999999999999999999999999999999876531
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYN 589 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrEN 589 (677)
....+|++++|+||++ .+|..|+.||
T Consensus 79 ----------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~~v~~~ 106 (280)
T PRK13633 79 ----------------------------------------------------NLWDIRNKAGMVFQNPDNQIVATIVEED 106 (280)
T ss_pred ----------------------------------------------------cHHHHhhheEEEecChhhhhccccHHHH
Confidence 2345678899999987 3677789999
Q ss_pred cccCC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 590 LDPFG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 590 I~~~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
+.++. ..+ ++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~ 177 (280)
T PRK13633 107 VAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA---------PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177 (280)
T ss_pred HHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 96532 112 34567788888887765543 3689999999999999999999976
Q ss_pred -------------cc-cccce------ecccccccEEEEEeCCeeC
Q psy845 652 -------------KK-SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~-~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
.. .++|| ++.+..|||+++|++|+++
T Consensus 178 ~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~ 223 (280)
T PRK13633 178 SGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEE
Confidence 11 26673 2334569999999999974
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=275.20 Aligned_cols=188 Identities=24% Similarity=0.312 Sum_probs=140.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+.++++||+++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.... ...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVR-----DKD 76 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccc-----ccc
Confidence 56999999999975 36999999999999999999999999999999999999999999999999875420 000
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+.+. +.+ ....+.+|+.++|+||++.+|. .|++||+.++
T Consensus 77 ~~~~----~~~------------------------------------~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~ 116 (257)
T PRK10619 77 GQLK----VAD------------------------------------KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 116 (257)
T ss_pred cccc----ccc------------------------------------chHHHHHhhceEEEecCcccCCCCcHHHHHHHH
Confidence 0000 000 0024567889999999999996 5999999642
Q ss_pred C----CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 594 G----RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 594 ~----~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
. ... ++++.++++..++.+... +. ...+||||||||++||||++++|+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 188 (257)
T PRK10619 117 PIQVLGLSKQEARERAVKYLAKVGIDERAQ------GK--YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188 (257)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCChhhh------hC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 111 234566777777655431 11 46799999999999999999999976
Q ss_pred ----------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
...++|| .| .+. .||||++|++|+++
T Consensus 189 ~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 189 GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1235663 22 344 38999999999974
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=276.31 Aligned_cols=169 Identities=27% Similarity=0.351 Sum_probs=137.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|+++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.
T Consensus 11 ~~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----------- 77 (257)
T PRK11247 11 TPLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----------- 77 (257)
T ss_pred CcEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----------
Confidence 459999999999753 6999999999999999999999999999999999999999999999986542
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
.+|++++|++|++.+|. .|++||+.+.
T Consensus 78 ----------------------------------------------------~~~~~i~~v~q~~~l~~~~tv~enl~~~ 105 (257)
T PRK11247 78 ----------------------------------------------------EAREDTRLMFQDARLLPWKKVIDNVGLG 105 (257)
T ss_pred ----------------------------------------------------HhhCceEEEecCccCCCCCcHHHHHHhc
Confidence 34567888999988886 6999999753
Q ss_pred C-CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 594 G-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 594 ~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
. ...++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L 176 (257)
T PRK11247 106 LKGQWRDAALQALAAVGLADRANE---------WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176 (257)
T ss_pred ccchHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 2 2235667788888888655432 35799999999999999999999976
Q ss_pred -c--c-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -K--K-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~--~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. . .++|| .|. + +.||+|++|++|+++
T Consensus 177 ~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 177 ESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1 1 25663 232 3 349999999999974
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=260.72 Aligned_cols=146 Identities=35% Similarity=0.569 Sum_probs=124.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|+++++++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 69 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL----------- 69 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-----------
Confidence 478999999976534699999999999999999999999999999999999999999999999876432
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
...+|+.++|++|++.+|+.|++||+
T Consensus 70 ------------------------------------------------~~~~~~~i~~~~q~~~~~~~tv~~~i------ 95 (178)
T cd03247 70 ------------------------------------------------EKALSSLISVLNQRPYLFDTTLRNNL------ 95 (178)
T ss_pred ------------------------------------------------HHHHHhhEEEEccCCeeecccHHHhh------
Confidence 23567889999999999999999997
Q ss_pred ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------cc
Q psy845 597 HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-----------------------KK 653 (677)
Q Consensus 597 sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~ 653 (677)
..+||||||||++||||++++|+++ ..
T Consensus 96 ------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 96 ------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred ------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999976 11
Q ss_pred cccce------ecccccccEEEEEeCCeeC
Q psy845 654 SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 654 ~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+++|| ...+..|||+++|++|+++
T Consensus 146 ~~~tii~~sh~~~~~~~~d~~~~l~~g~i~ 175 (178)
T cd03247 146 KDKTLIWITHHLTGIEHMDKILFLENGKII 175 (178)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 34563 2234569999999999974
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=269.01 Aligned_cols=173 Identities=29% Similarity=0.403 Sum_probs=137.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------- 74 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL---------- 74 (225)
T ss_pred eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcC----------
Confidence 48999999999753 599999999999999999999999999999999999999999999999988776
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC--
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF-- 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~-- 593 (677)
+...+|+.++|++|++.+|+.|++||+.+.
T Consensus 75 ------------------------------------------------~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~ 106 (225)
T PRK10247 75 ------------------------------------------------KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQ 106 (225)
T ss_pred ------------------------------------------------CHHHHHhccEEEecccccccccHHHHHHhHHh
Confidence 555678899999999999999999999642
Q ss_pred --CC-CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 594 --GR-CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 594 --~~-~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
+. ..++++.++++..++.+.. .+. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~------~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (225)
T PRK10247 107 IRNQQPDPAIFLDDLERFALPDTI------LTK--NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178 (225)
T ss_pred hcCCChHHHHHHHHHHHcCCChHH------hcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11 1223455666666664211 111 56799999999999999999999976
Q ss_pred -----cc-cccce------ecccccccEEEEEe--CCee
Q psy845 652 -----KK-SGVNI------TRPVTSCDKVLVMD--NGQA 676 (677)
Q Consensus 652 -----~~-~~~TI------LsTI~~aDrIlVLd--~GrI 676 (677)
.. .+.|| ...++.||+|++|+ +|++
T Consensus 179 ~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 179 IIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEM 217 (225)
T ss_pred HHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchH
Confidence 11 25562 22345699999996 4543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=269.69 Aligned_cols=178 Identities=28% Similarity=0.417 Sum_probs=144.1
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|++++|+++|.++ .|++|+||+|++||..||+||||||||||+|++.|+..|++|+|.++|.|+.+++
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls-------- 76 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLS-------- 76 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccC--------
Confidence 469999999999764 6999999999999999999999999999999999999999999999999998872
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+....++|+++|+++|..-|| +.|+.||+.+-
T Consensus 77 -----------------------------------------------~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 77 -----------------------------------------------EEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred -----------------------------------------------HHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 126678899999999999999 56999999742
Q ss_pred ----CCCChHHHHH----HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------
Q psy845 594 ----GRCHDTELWD----ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------- 652 (677)
Q Consensus 594 ----~~~sdeeI~~----Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------- 652 (677)
.+.+++++.+ -++.+|+..-+..+ ..++||||+|.|.|||||+.-||+++.
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~--------~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a 181 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRGAAADL--------YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISA 181 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCChhhhhh--------CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchH
Confidence 2455555544 45667776552221 457999999999999999999999771
Q ss_pred ------------ccccc---eec----ccccccEEEEEeCCeeC
Q psy845 653 ------------KSGVN---ITR----PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------~~~~T---ILs----TI~~aDrIlVLd~GrIV 677 (677)
.-+.| |.| +..-||||+++.||+|+
T Consensus 182 ~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 182 GVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred HHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 11334 233 23458999999999984
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=276.12 Aligned_cols=179 Identities=26% Similarity=0.400 Sum_probs=138.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+.+ |++|+|.+||.++...+
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 94 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN---- 94 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc----
Confidence 5899999999975 369999999999999999999999999999999999865 79999999999875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|++|++||+
T Consensus 95 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 122 (268)
T PRK14248 95 ----------------------------------------------------INVVNLRREIGMVFQKPNPFPKSIYNNI 122 (268)
T ss_pred ----------------------------------------------------ccHHHHhccEEEEecCCccCcccHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccC----CC----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPF----GR----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~----~~----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+. +. ..++.+.++++..++.+.+... .+. ...+||||||||++||||++++|+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 197 (268)
T PRK14248 123 THALKYAGERRKSVLDEIVEESLTKAALWDEVKDR---LHS--SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP 197 (268)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHH---Hhc--CcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCH
Confidence 642 11 1123456677777765333211 122 56799999999999999999999976
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +.||||++|++|+++
T Consensus 198 ~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 198 ISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 1234563 222 2 349999999999974
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=273.29 Aligned_cols=173 Identities=21% Similarity=0.313 Sum_probs=131.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 72 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL---------- 72 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCC----------
Confidence 4899999999975 3699999999999999999999999999999999999999999999999988765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~~ 593 (677)
+... .|..++|++|++.+|.+ |++||+.++
T Consensus 73 ------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 104 (255)
T PRK11300 73 ------------------------------------------------PGHQIARMGVVRTFQHVRLFREMTVIENLLVA 104 (255)
T ss_pred ------------------------------------------------CHHHHHhcCeEEeccCcccCCCCcHHHHHHHh
Confidence 3223 34568888999988874 999998753
Q ss_pred CC----------------CC------hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 594 GR----------------CH------DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 594 ~~----------------~s------deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.. .. .+++.++++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~--~~~~LS~G~~qrv~la~al~~~p~ll 175 (255)
T PRK11300 105 QHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA-------NR--QAGNLAYGQQRRLEIARCMVTQPEIL 175 (255)
T ss_pred hhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhh-------hC--ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 10 00 01223333444333221 11 56799999999999999999999976
Q ss_pred ------------------------ccc-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------------------KKS-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------------------~~~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .| .+ ..||+|++|++|+++
T Consensus 176 llDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 112 5663 22 23 349999999999974
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=276.31 Aligned_cols=169 Identities=26% Similarity=0.385 Sum_probs=141.4
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
.+.|+++|+++. + .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 37 ~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------- 98 (282)
T cd03291 37 DNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------- 98 (282)
T ss_pred CCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------------
Confidence 457999999985 2 3599999999999999999999999999999999999999999998876
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
.++|++|++.+|++|++||+.+.
T Consensus 99 ---------------------------------------------------------~i~yv~q~~~l~~~tv~enl~~~ 121 (282)
T cd03291 99 ---------------------------------------------------------RISFSSQFSWIMPGTIKENIIFG 121 (282)
T ss_pred ---------------------------------------------------------EEEEEeCcccccccCHHHHhhcc
Confidence 15677888888888999999764
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
....+.+..++++.+++.+.+..+|+++++.+ .+.+||||||||++||||++++|+++
T Consensus 122 ~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ 201 (282)
T cd03291 122 VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFES 201 (282)
T ss_pred cccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 33344556777888899999999999998877 67899999999999999999999876
Q ss_pred ----cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..++.|| ...+..||+|++|++|+++
T Consensus 202 ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~ 237 (282)
T cd03291 202 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSSY 237 (282)
T ss_pred HHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 0124453 2234569999999999974
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=273.22 Aligned_cols=180 Identities=24% Similarity=0.350 Sum_probs=135.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-------- 73 (250)
T PRK11264 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL-------- 73 (250)
T ss_pred EEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccc--------
Confidence 7899999999753 599999999999999999999999999999999999999999999999987543000
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC--
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF-- 593 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~-- 593 (677)
+-...+...+|++++||||++.+|. .|++||+.+.
T Consensus 74 ------------------------------------------~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 111 (250)
T PRK11264 74 ------------------------------------------SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPV 111 (250)
T ss_pred ------------------------------------------cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHH
Confidence 0000034567889999999999885 7999999642
Q ss_pred --CCCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 594 --GRCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 594 --~~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..... +++.++++..++.+.. |. ...+||||||||++||||++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~--~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 182 (250)
T PRK11264 112 IVKGEPKEEATARARELLAKVGLAGKE-------TS--YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGE 182 (250)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCcchh-------hC--ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 11121 2244455555544321 11 56899999999999999999999976
Q ss_pred --------cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. +. -||||++|++|+++
T Consensus 183 l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 223 (250)
T PRK11264 183 VLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV 223 (250)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1135563 222 33 49999999999974
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=290.06 Aligned_cols=171 Identities=23% Similarity=0.353 Sum_probs=137.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|++. .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 ~l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~---------- 70 (369)
T PRK11000 3 SVTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDV---------- 70 (369)
T ss_pred EEEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC----------
Confidence 48999999999753 599999999999999999999999999999999999999999999999998665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+. .+++++||+|++.+|. .|++||+.++.
T Consensus 71 ------------------------------------------------~~--~~~~i~~v~Q~~~l~~~~tv~eni~~~~ 100 (369)
T PRK11000 71 ------------------------------------------------PP--AERGVGMVFQSYALYPHLSVAENMSFGL 100 (369)
T ss_pred ------------------------------------------------CH--hHCCEEEEeCCcccCCCCCHHHHHHhHH
Confidence 32 2467999999999985 59999997532
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~lgL~~~~~~---------~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~ 171 (369)
T PRK11000 101 KLAGAKKEEINQRVNQVAEVLQLAHLLDR---------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171 (369)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCChhhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 122 2346777888877655443 34689999999999999999999976
Q ss_pred --------ccc-ccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KKS-GVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~-~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+ +.|+ .|.. .-||||++|++|+++
T Consensus 172 l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 172 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213 (369)
T ss_pred HHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5562 3332 349999999999974
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=269.31 Aligned_cols=174 Identities=28% Similarity=0.449 Sum_probs=131.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 68 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP---------- 68 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC----------
Confidence 4789999999753 6999999999999999999999999999999999999999999999999887651
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+.+..+++++|+||++.+|.. |++||+.+...
T Consensus 69 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (230)
T TIGR03410 69 -----------------------------------------------PHERARAGIAYVPQGREIFPRLTVEENLLTGLA 101 (230)
T ss_pred -----------------------------------------------HHHHHHhCeEEeccCCcccCCCcHHHHHHHHHH
Confidence 122346789999999999975 99999964311
Q ss_pred ---CChHH-HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 596 ---CHDTE-LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 596 ---~sdee-I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
..+++ ..++++..+. +++-.+. ...+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~l~~~~~------l~~~~~~--~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~ 173 (230)
T TIGR03410 102 ALPRRSRKIPDEIYELFPV------LKEMLGR--RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV 173 (230)
T ss_pred hcCcchHHHHHHHHHHHHh------HHHHhhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 11111 2223333221 1111222 56799999999999999999999976
Q ss_pred ----cc-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ----KK-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+. .||+|+++++|+++
T Consensus 174 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~ 211 (230)
T TIGR03410 174 IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV 211 (230)
T ss_pred HHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25673 22 234 49999999999974
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=275.21 Aligned_cols=180 Identities=28% Similarity=0.368 Sum_probs=140.2
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~ 509 (677)
..++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~--- 85 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD--- 85 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc---
Confidence 36999999999974 3599999999999999999999999999999999999985 7999999999875430
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|++++|++|++.+|+.|++||
T Consensus 86 -----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~en 112 (258)
T PRK14268 86 -----------------------------------------------------VDVVELRKNVGMVFQKPNPFPMSIYDN 112 (258)
T ss_pred -----------------------------------------------------chHHHHhhhEEEEecCCccCcccHHHH
Confidence 033457888999999999999999999
Q ss_pred cccCC---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 590 LDPFG---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 590 I~~~~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
+.+.. ..+. +++.++++.+++.+.+. +.+++ ...+||||||||++||||++++|+++
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~--~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 187 (258)
T PRK14268 113 VAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKS--PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187 (258)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 96421 1222 23566777777754322 22333 46799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 188 ~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 232 (258)
T PRK14268 188 ISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI 232 (258)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1235563 22 23 349999999999974
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=276.01 Aligned_cols=174 Identities=20% Similarity=0.292 Sum_probs=139.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|+++||+++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--------- 74 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY--------- 74 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhC---------
Confidence 46999999999975 3699999999999999999999999999999999999999999999999988766
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+...+|+.++|+||++.+| +.|++||+.++
T Consensus 75 -------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~ 105 (265)
T PRK10253 75 -------------------------------------------------ASKEVARRIGLLAQNATTPGDITVQELVARG 105 (265)
T ss_pred -------------------------------------------------CHHHHhhheEEeeccCcCCCCCcHHHHHHhC
Confidence 5556677888899988887 46999998643
Q ss_pred C--C---------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 594 G--R---------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 594 ~--~---------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
. . ..++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~ 176 (265)
T PRK10253 106 RYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ---------SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHhcC---------CcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 1 0 112346677887777654332 46799999999999999999999976
Q ss_pred -------------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + ..||||++|++|+++
T Consensus 177 ~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 177 SHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25563 232 2 349999999999974
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=273.97 Aligned_cols=179 Identities=25% Similarity=0.327 Sum_probs=139.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE--L---SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~--p---~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.+.+
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~---- 85 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK---- 85 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc----
Confidence 58999999999753 59999999999999999999999999999999999987 3 5899999999875320
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|+||++.+|++|++||+
T Consensus 86 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 113 (259)
T PRK14274 86 ----------------------------------------------------VDLVELRKNIGMVFQKGNPFPQSIFDNV 113 (259)
T ss_pred ----------------------------------------------------cCHHHHhhceEEEecCCcccccCHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCCC----CCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFGR----CHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~~----~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+... .++ +++.++++..++.+++... ++. .+.+||||||||++||||++++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---l~~--~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~ 188 (259)
T PRK14274 114 AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR---LHT--QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP 188 (259)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh---hhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 64321 122 2345567777776554321 222 56799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .| .+ +.||||++|++|+++
T Consensus 189 ~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 189 VSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV 233 (259)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 1234562 23 23 349999999999974
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=271.08 Aligned_cols=172 Identities=23% Similarity=0.307 Sum_probs=133.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------- 69 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL----------- 69 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCC-----------
Confidence 789999999975 3699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHH-HHhhhccccccccccccc-chhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE-TLRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
+.. ..|+.++|++|++.+|.+ |++||+.+..
T Consensus 70 -----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 102 (242)
T TIGR03411 70 -----------------------------------------------PEHQIARAGIGRKFQKPTVFENLTVFENLELAL 102 (242)
T ss_pred -----------------------------------------------CHHHHHhcCeeEeccccccCCCCCHHHHHHHhh
Confidence 222 235679999999999875 9999996531
Q ss_pred CC---------------ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 595 RC---------------HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 595 ~~---------------sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
.. .++++.++++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~ 173 (242)
T TIGR03411 103 PRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-------DR--LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173 (242)
T ss_pred hcccccccccccccHHHHHHHHHHHHHHcCCchhh-------cC--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 10 122345555555543322 22 45789999999999999999999976
Q ss_pred ---------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||+|++|++|+++
T Consensus 174 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 174 MTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 1234563 22 233 49999999999974
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=274.90 Aligned_cols=178 Identities=26% Similarity=0.375 Sum_probs=138.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
-+++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|+++.+.+
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~----- 78 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD----- 78 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc-----
Confidence 368899999974 369999999999999999999999999999999999986 47999999999875540
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
.+...+|++++|+||++.+|++|++||+.
T Consensus 79 ---------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~~ni~ 107 (251)
T PRK14244 79 ---------------------------------------------------TNVVLLRAKVGMVFQKPNPFPKSIYDNVA 107 (251)
T ss_pred ---------------------------------------------------cchHHHhhhEEEEecCcccccCCHHHHHH
Confidence 02345788999999999999999999996
Q ss_pred cCC---C------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 592 PFG---R------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 592 ~~~---~------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
+.. . ..++++.++++..++.+++... ++. .+.+||||||||++||||++++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~ 182 (251)
T PRK14244 108 YGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDR---LKD--SAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP 182 (251)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhH---hhc--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 431 1 1124466778888876543221 111 46799999999999999999999976
Q ss_pred ------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||||++|++|+++
T Consensus 183 ~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 227 (251)
T PRK14244 183 VATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 1235663 22 333 49999999999974
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=272.76 Aligned_cols=179 Identities=26% Similarity=0.371 Sum_probs=140.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
-|+++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~---- 76 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ---- 76 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch----
Confidence 3889999999974 3699999999999999999999999999999999999984 8999999998875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|+.|++||+
T Consensus 77 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~e~l 104 (250)
T PRK14262 77 ----------------------------------------------------LDVTEYRKKVGMVFQKPTPFPMSIYDNV 104 (250)
T ss_pred ----------------------------------------------------hhHHHhhhhEEEEecCCccCcccHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCC----CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG----RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~----~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+.. .. .++++.++++..++++.+..+ .+. ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~ 179 (250)
T PRK14262 105 AFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSE---LNK--PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHH---HhC--ChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCH
Confidence 6421 11 123456677888876544322 111 56799999999999999999999976
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + ..||||++|++|+++
T Consensus 180 ~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14262 180 IATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI 224 (250)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1234563 222 2 349999999999974
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=272.12 Aligned_cols=181 Identities=26% Similarity=0.372 Sum_probs=140.4
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE--L---SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~--p---~~G~I~IdG~dI~~l~~~ 508 (677)
++.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.+.+
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~-- 77 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG-- 77 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc--
Confidence 356999999999975 369999999999999999999999999999999999986 4 6899999999885430
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIR 587 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIr 587 (677)
.+...+|+.++|+||++.+|. .|++
T Consensus 78 ------------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~ 103 (252)
T PRK14256 78 ------------------------------------------------------VDPVSIRRRVGMVFQKPNPFPAMSIY 103 (252)
T ss_pred ------------------------------------------------------CChHHhhccEEEEecCCCCCCcCcHH
Confidence 033467888999999999987 6999
Q ss_pred hccccC----CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 588 YNLDPF----GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 588 ENI~~~----~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
||+... +..+ ++++.++++..++.+++... .+. .+.+||||||||++||||++++|+++
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~G~~qrl~laral~~~p~llllDEP~~g 178 (252)
T PRK14256 104 DNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR---LKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASA 178 (252)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH---hhC--CcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999642 1111 23456677788876554332 112 56799999999999999999999976
Q ss_pred ---------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.|||+++|++|+++
T Consensus 179 LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14256 179 LDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV 226 (252)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 1134552 22 23 349999999999974
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=275.97 Aligned_cols=181 Identities=28% Similarity=0.356 Sum_probs=142.1
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~ 508 (677)
.+.++++||+++|++. ++++|+||++++||.+||+||||||||||+++|+|+++| ++|+|.+||.++...+
T Consensus 23 ~~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~-- 98 (272)
T PRK14236 23 QTALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK-- 98 (272)
T ss_pred CcEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc--
Confidence 4569999999999653 699999999999999999999999999999999999984 8999999999875420
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
.+...+|+.++|++|++.+|++|++|
T Consensus 99 ------------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~e 124 (272)
T PRK14236 99 ------------------------------------------------------VDVAELRRRVGMVFQRPNPFPKSIYE 124 (272)
T ss_pred ------------------------------------------------------cCHHHHhccEEEEecCCccCcccHHH
Confidence 04456788999999999999999999
Q ss_pred ccccCC---CC-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 589 NLDPFG---RC-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 589 NI~~~~---~~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
|+.+.. .. . ++++.++++.+++.+.+... ++. .+.+||||||||++||||++++|+++
T Consensus 125 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gL 199 (272)
T PRK14236 125 NVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDR---LHE--NAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSAL 199 (272)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHH---hhC--CcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccC
Confidence 996421 11 1 23467777777776554332 122 56899999999999999999999976
Q ss_pred --------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||||++|++|+++
T Consensus 200 D~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 200 DPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV 246 (272)
T ss_pred CHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 1234562 222 3 349999999999974
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=276.47 Aligned_cols=174 Identities=23% Similarity=0.318 Sum_probs=135.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~---------- 69 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK---------- 69 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEccccc----------
Confidence 679999999975 35999999999999999999999999999999999999999999999999874210
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--ccccchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFNGTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LFsgTIrENI~~~~ 594 (677)
.+...+|++++||||++. ++..|+.||+.+..
T Consensus 70 ----------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~ 103 (271)
T PRK13638 70 ----------------------------------------------RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSL 103 (271)
T ss_pred ----------------------------------------------CCHHHHHhheEEEeeChhhccccccHHHHHHHHH
Confidence 034567788999999875 56778999986421
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+. +++.++++..++.++.. + ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~--~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~ 174 (271)
T PRK13638 104 RNLGVPEAEITRRVDEALTLVDAQHFRH-------Q--PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174 (271)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHhHhc-------C--CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1222 23456677777655432 2 45799999999999999999999976
Q ss_pred --------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + ..||||++|++|+++
T Consensus 175 l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~ 215 (271)
T PRK13638 175 MIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL 215 (271)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1135663 222 3 349999999999974
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=269.30 Aligned_cols=174 Identities=28% Similarity=0.464 Sum_probs=133.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 71 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP--------- 71 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 3789999999975 36999999999999999999999999999999999999999999999999886651
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+.+..|+.++|+||++.+|. .|++||+....
T Consensus 72 ------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 103 (241)
T PRK10895 72 ------------------------------------------------LHARARRGIGYLPQEASIFRRLSVYDNLMAVL 103 (241)
T ss_pred ------------------------------------------------HHHHHHhCeEEeccCCcccccCcHHHHHhhhh
Confidence 22345778999999998887 59999997532
Q ss_pred C----CChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 R----CHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 ~----~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. .+.+ ++.+.++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (241)
T PRK10895 104 QIRDDLSAEQREDRANELMEEFHIEHLR-------DS--MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174 (241)
T ss_pred hcccccCHHHHHHHHHHHHHHcCCHHHh-------hc--chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 1 1111 233334443332211 11 56799999999999999999999976
Q ss_pred ---------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
...++|+ .|.. +.||+|++|++|+++
T Consensus 175 ~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~ 216 (241)
T PRK10895 175 DIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI 216 (241)
T ss_pred HHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE
Confidence 1235663 2322 348999999999974
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=271.38 Aligned_cols=179 Identities=28% Similarity=0.385 Sum_probs=139.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----ccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-----~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+.+
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---- 77 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN---- 77 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc----
Confidence 5899999999975 35999999999999999999999999999999999999997 699999998875430
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|+.++||||++.+|+.|++||+
T Consensus 78 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 105 (251)
T PRK14249 78 ----------------------------------------------------LDVVNLRKRVGMVFQQPNPFPKSIFDNV 105 (251)
T ss_pred ----------------------------------------------------cChHHhhceEEEEecCCccCcCcHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCCC---CC-----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFGR---CH-----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~~---~s-----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+... .. ++.+.++++..++.+++..+ .+. .+.+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~ 180 (251)
T PRK14249 106 AFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDN---LHK--SGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180 (251)
T ss_pred hhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhH---hhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 75321 11 23345566667766554322 122 57899999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ ..||+|++|++|+++
T Consensus 181 ~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14249 181 VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLV 225 (251)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEE
Confidence 1234563 22 22 348999999999973
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-32 Score=290.88 Aligned_cols=160 Identities=28% Similarity=0.309 Sum_probs=132.2
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
+.+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~------------------------- 60 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ------------------------- 60 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcC-------------------------
Confidence 3599999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH----hhhcccccccccccc-cchhhccccCC---CC----Ch
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL----RSRLSVIPQDPVLFN-GTIRYNLDPFG---RC----HD 598 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L----R~~I~~V~Qd~~LFs-gTIrENI~~~~---~~----sd 598 (677)
+..++ |++++||+|++.+|+ .|++||+.++. .. ..
T Consensus 61 ---------------------------------~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~ 107 (363)
T TIGR01186 61 ---------------------------------SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERK 107 (363)
T ss_pred ---------------------------------CHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHH
Confidence 44455 678999999999996 69999996431 11 23
Q ss_pred HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------c-c
Q psy845 599 TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------K-K 653 (677)
Q Consensus 599 eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~-~ 653 (677)
+++.++++.+++.++..+. ..+||||||||++|||||+++|+++ . .
T Consensus 108 ~~~~~~l~~vgL~~~~~~~---------p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~ 178 (363)
T TIGR01186 108 EKALELLKLVGLEEYEHRY---------PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178 (363)
T ss_pred HHHHHHHHhcCCchhhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 4567788888887765543 4589999999999999999999976 1 1
Q ss_pred cccce---ecc----cccccEEEEEeCCeeC
Q psy845 654 SGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 654 ~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
.++|| .|. .+.||||++|++|+++
T Consensus 179 ~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv 209 (363)
T TIGR01186 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIV 209 (363)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 26773 333 3459999999999984
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=281.38 Aligned_cols=172 Identities=33% Similarity=0.453 Sum_probs=134.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++|++++|++. .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 71 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR---------- 71 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc----------
Confidence 48999999999753 599999999999999999999999999999999999999999999999987543
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+ ...|++++|+||++.++ ..|++||+....
T Consensus 72 ------------------------------------------------~-~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 102 (303)
T TIGR01288 72 ------------------------------------------------A-RLARVAIGVVPQFDNLDPEFTVRENLLVFG 102 (303)
T ss_pred ------------------------------------------------H-HHHhhcEEEEeccccCCcCCcHHHHHHHHH
Confidence 2 35678899999998888 469999996321
Q ss_pred ---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+.++ +.++++..++.+ ..++ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~--~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 173 (303)
T TIGR01288 103 RYFGMSTREIEAVIPSLLEFARLES-------KADV--RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 173 (303)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChh-------HhcC--chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 123222 334455554433 3344 35689999999999999999999976
Q ss_pred --------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +-||||++|++|+++
T Consensus 174 l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 174 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI 214 (303)
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 222 3 249999999999974
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=273.65 Aligned_cols=177 Identities=26% Similarity=0.358 Sum_probs=138.1
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~ 508 (677)
...++++||+++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++...+
T Consensus 11 ~~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~-- 86 (269)
T PRK14259 11 NIIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR-- 86 (269)
T ss_pred CceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc--
Confidence 3469999999999753 59999999999999999999999999999999999987 68999999999875320
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
.+..++|++++|+||++.+|..|++|
T Consensus 87 ------------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~e 112 (269)
T PRK14259 87 ------------------------------------------------------VDPVEVRRRIGMVFQQPNPFPKSIYE 112 (269)
T ss_pred ------------------------------------------------------CCHHHHhhceEEEccCCccchhhHHH
Confidence 04456788999999999999889999
Q ss_pred ccccCCC---C---ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 589 NLDPFGR---C---HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 589 NI~~~~~---~---sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
|+.+... . .++++.++++.+++.+.+.. ..+. ...+||||||||++||||++++|+++
T Consensus 113 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~~--~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~ 187 (269)
T PRK14259 113 NIAFGARINGYTGDMDELVERSLRKAAVWDECKD---KLNE--SGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDP 187 (269)
T ss_pred HHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh---hhCC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 9975321 1 13445667777776543322 1222 46799999999999999999999976
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDN 673 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~ 673 (677)
..+++|| .|. + ..||||++|++
T Consensus 188 ~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 188 ISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 1234552 222 2 35999999997
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=269.97 Aligned_cols=178 Identities=26% Similarity=0.434 Sum_probs=133.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 72 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDW---------- 72 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCC----------
Confidence 4899999999975 3699999999999999999999999999999999999999999999999988765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH-HHHhhhcccccccccccc-cchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+. +..|+.++|++|++.+|. .|++||+...
T Consensus 73 ------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 104 (237)
T PRK11614 73 ------------------------------------------------QTAKIMREAVAIVPEGRRVFSRMTVEENLAMG 104 (237)
T ss_pred ------------------------------------------------CHHHHHHhCEEEeccCcccCCCCcHHHHHHHh
Confidence 33 235778999999999997 4999999753
Q ss_pred CC-CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 594 GR-CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 594 ~~-~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
.. .+.++..+.++. +.+.+..+.+..+. ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~--~l~~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l 180 (237)
T PRK11614 105 GFFAERDQFQERIKW--VYELFPRLHERRIQ--RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTI 180 (237)
T ss_pred hhccChhHHHHHHHH--HHHHHHHHHHHHhC--chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 21 122222221111 01111112111222 56799999999999999999999976
Q ss_pred ---cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. .+.||||++|++|+++
T Consensus 181 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 181 EQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred HHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence 1235673 232 2359999999999974
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=272.04 Aligned_cols=179 Identities=25% Similarity=0.333 Sum_probs=139.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC---CCC--CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL---VEL--SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~---y~p--~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++|++++|++ .++++|+||++++||++||+||||||||||+++|+|+ ++| ++|+|.+||.++.+.+
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 76 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG---- 76 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc----
Confidence 4889999999975 3599999999999999999999999999999999997 444 5899999999875530
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|+||++.+|+.|++||+
T Consensus 77 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~~nl 104 (250)
T PRK14245 77 ----------------------------------------------------VQVDELRKNVGMVFQRPNPFPKSIFENV 104 (250)
T ss_pred ----------------------------------------------------ccHHHHhhheEEEecCCccCcccHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCC---CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+.. .. .++++.++++..++.+++.... +. .+.+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 179 (250)
T PRK14245 105 AYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL---KE--SAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP 179 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh---hC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 6421 11 1234567777777765543221 11 56799999999999999999999976
Q ss_pred ------------cccccce---e---ccc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---T---RPV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---L---sTI-~~aDrIlVLd~GrIV 677 (677)
..+++|| . +.+ ..||||++|++|+++
T Consensus 180 ~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 180 ISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV 224 (250)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 1234563 2 233 349999999999974
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=271.74 Aligned_cols=172 Identities=27% Similarity=0.363 Sum_probs=137.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~----------- 69 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADW----------- 69 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccC-----------
Confidence 789999999975 3699999999999999999999999999999999999999999999999988766
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~~ 595 (677)
+...++++++|++|++.+ ++.|++||+.+...
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 102 (258)
T PRK13548 70 -----------------------------------------------SPAELARRRAVLPQHSSLSFPFTVEEVVAMGRA 102 (258)
T ss_pred -----------------------------------------------CHHHhhhheEEEccCCcCCCCCCHHHHHHhhhc
Confidence 455667789999999887 67899999965321
Q ss_pred ---C----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHh------ccchhh-----------
Q psy845 596 ---C----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL------RKTKKK----------- 651 (677)
Q Consensus 596 ---~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALL------r~p~IL----------- 651 (677)
. .++++.++++..++.+...+ ...+||||||||++||||++ ++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 103 PHGLSRAEDDALVAAALAQVDLAHLAGR---------DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCHhHhcC---------CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 1 12346667777777554322 45799999999999999999 588765
Q ss_pred -------------c-ccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------------K-KSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~-~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. ..++|| .|. + ..||+|++|++|+++
T Consensus 174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE
Confidence 1 235663 222 3 259999999999974
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=277.47 Aligned_cols=178 Identities=29% Similarity=0.414 Sum_probs=136.2
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
|+++|++++|+++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~------ 76 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETG------ 76 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc------
Confidence 78999999997431 369999999999999999999999999999999999999999999999998854300
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
.-+....|+.++|++|++ .+|+.|++||+.
T Consensus 77 ------------------------------------------------~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 108 (287)
T PRK13641 77 ------------------------------------------------NKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108 (287)
T ss_pred ------------------------------------------------cchHHHHHhceEEEEeChhhhhccchHHHHHH
Confidence 003456778899999998 577889999996
Q ss_pred cCC---CCChH----HHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 592 PFG---RCHDT----ELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 592 ~~~---~~sde----eI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+.. ..+.+ .+.++++..++. ++.. . ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-------~--~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 109 FGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-------K--SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-------C--CcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 421 12222 245556666654 2211 1 46799999999999999999999976
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..++.|| .|. + +-||||++|++|+++
T Consensus 180 ~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI 224 (287)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 222 2 349999999999974
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=270.79 Aligned_cols=179 Identities=27% Similarity=0.362 Sum_probs=140.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~---- 77 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD---- 77 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc----
Confidence 5899999999975 3699999999999999999999999999999999999885 7999999999885430
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+....|+.++|+||++.+|+.|++||+
T Consensus 78 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~enl 105 (251)
T PRK14270 78 ----------------------------------------------------VDVVELRKRVGMVFQKPNPFPMSIYDNV 105 (251)
T ss_pred ----------------------------------------------------ccHHHHHhheEEEecCCCcCCCcHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCCC---C-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFGR---C-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~~---~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+... . + ++++.++++.+++.+.+... .+. ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 180 (251)
T PRK14270 106 AYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD---LKK--SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP 180 (251)
T ss_pred HhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH---hhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 74321 1 1 23456677787775443322 111 56799999999999999999999976
Q ss_pred ------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||||++|++|+++
T Consensus 181 ~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~ 225 (251)
T PRK14270 181 ISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI 225 (251)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEE
Confidence 1234552 22 233 39999999999974
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=276.57 Aligned_cols=175 Identities=25% Similarity=0.389 Sum_probs=137.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+++.-+
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~---------- 70 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDK---------- 70 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECcccc----------
Confidence 6899999999743 35999999999999999999999999999999999999999999999999884210
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~~ 594 (677)
.+...+|++++|++|++ .+|+.|++||+.+..
T Consensus 71 ----------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~ 104 (275)
T PRK13639 71 ----------------------------------------------KSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP 104 (275)
T ss_pred ----------------------------------------------chHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 03456788999999997 578899999996421
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+. +++.++++..++.++... ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~---------~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 175 (275)
T PRK13639 105 LNLGLSKEEVEKRVKEALKAVGMEGFENK---------PPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 (275)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 1222 345667777777543222 35799999999999999999999976
Q ss_pred --------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||||++|++|+++
T Consensus 176 l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~ 216 (275)
T PRK13639 176 IMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII 216 (275)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 22 333 49999999999974
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=277.16 Aligned_cols=183 Identities=25% Similarity=0.299 Sum_probs=136.2
Q ss_pred CccEEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHh
Q psy845 434 QGTIKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~ 510 (677)
.+.|+++|++++|+++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+-..
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~--- 80 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK--- 80 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc---
Confidence 46799999999997542 259999999999999999999999999999999999999999999999998743100
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhh
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRY 588 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrE 588 (677)
...+...+|++++|++|++ .+|+.|++|
T Consensus 81 --------------------------------------------------~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 110 (289)
T PRK13645 81 --------------------------------------------------KIKEVKRLRKEIGLVFQFPEYQLFQETIEK 110 (289)
T ss_pred --------------------------------------------------ccccHHHHhccEEEEEeCcchhhhhhHHHH
Confidence 0003456788999999997 477889999
Q ss_pred ccccCC---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 589 NLDPFG---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 589 NI~~~~---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
|+.+.. ..+.++ +.++++..++ |+++.. -...+||||||||++||||++++|+++
T Consensus 111 nl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 182 (289)
T PRK13645 111 DIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDYVK-RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182 (289)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 996431 122222 2334444443 222111 146799999999999999999999976
Q ss_pred --------------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + +.||||++|++|+++
T Consensus 183 ~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 183 PKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 332 2 359999999999974
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=275.86 Aligned_cols=176 Identities=22% Similarity=0.317 Sum_probs=136.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~------- 77 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRS------- 77 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChh-------
Confidence 4899999999964 3699999999999999999999999999999999999999999999999988765100
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccC-
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPF- 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~- 593 (677)
+...+|++++|++|++.+|.+ |++||+.+.
T Consensus 78 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 109 (269)
T PRK11831 78 ------------------------------------------------RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPL 109 (269)
T ss_pred ------------------------------------------------hHHHHhhcEEEEecccccCCCCCHHHHHHHHH
Confidence 234567889999999999875 999999642
Q ss_pred ---CCCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 ---GRCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ---~~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
...+. +++.++++..++.+.... ...+||||||||++||||++++|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 180 (269)
T PRK11831 110 REHTQLPAPLLHSTVMMKLEAVGLRGAAKL---------MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG 180 (269)
T ss_pred HHccCCCHHHHHHHHHHHHHHcCChhhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 11122 234455666665443222 45789999999999999999999876
Q ss_pred -------c--cc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------K--KS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~--~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. .+ ++|| .|. + +.||+|++|++|+++
T Consensus 181 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~ 223 (269)
T PRK11831 181 VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV 223 (269)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE
Confidence 1 12 5663 332 2 349999999999974
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=280.10 Aligned_cols=171 Identities=23% Similarity=0.378 Sum_probs=136.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~----------- 69 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN----------- 69 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-----------
Confidence 789999999974 3699999999999999999999999999999999999999999999999887552
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
...+|++++|+||++.+|.+ |++||+.+..
T Consensus 70 ------------------------------------------------~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~ 101 (301)
T TIGR03522 70 ------------------------------------------------PKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG 101 (301)
T ss_pred ------------------------------------------------hHHHHhceEEecCCCCCCCCCcHHHHHHHHHH
Confidence 24577889999999988865 9999996422
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ .+++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l 172 (301)
T TIGR03522 102 IYGMKGQLLKQRVEEMIELVGLRPEQHK---------KIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172 (301)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcC---------chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 112 2345666666666544322 45789999999999999999999976
Q ss_pred ------cccccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
..+++|| . +.+. -||||++|++|+++
T Consensus 173 ~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~ 211 (301)
T TIGR03522 173 RNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211 (301)
T ss_pred HHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1235563 2 2233 39999999999974
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=288.49 Aligned_cols=172 Identities=25% Similarity=0.395 Sum_probs=138.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++|++++|++ ..+|+|+||++++||.++|+||||||||||+++|+|+.+|++|+|.+||.++.+.
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~--------- 86 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--------- 86 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---------
Confidence 35999999999975 3699999999999999999999999999999999999999999999999988665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+. .|+++|||+|++.||. .|++||+.++
T Consensus 87 -------------------------------------------------~~--~~r~ig~vfQ~~~lfp~ltv~eNi~~~ 115 (377)
T PRK11607 87 -------------------------------------------------PP--YQRPINMMFQSYALFPHMTVEQNIAFG 115 (377)
T ss_pred -------------------------------------------------CH--HHCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 32 3678999999999995 5999999753
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
- +.+ .+++.++++..++.++..+ ...+||||||||+||||||+++|+++
T Consensus 116 l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~---------~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~ 186 (377)
T PRK11607 116 LKQDKLPKAEIASRVNEMLGLVHMQEFAKR---------KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRD 186 (377)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 2 122 2345667777777655443 34689999999999999999999976
Q ss_pred ----------cccccc-e--ecc----cccccEEEEEeCCeeC
Q psy845 652 ----------KKSGVN-I--TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~T-I--LsT----I~~aDrIlVLd~GrIV 677 (677)
...+.| | .|. ..-||||+||++|+++
T Consensus 187 ~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 187 RMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE
Confidence 112456 2 222 2349999999999974
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=277.41 Aligned_cols=174 Identities=29% Similarity=0.349 Sum_probs=135.7
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
.++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~--------- 94 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRK--------- 94 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChh---------
Confidence 567899999753 699999999999999999999999999999999999999999999999998765110
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccc-ccchhhccccCC-
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
+...+ +++++|+||++.+| +.|++||+.+..
T Consensus 95 ----------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 95 ----------------------------------------------ELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred ----------------------------------------------hhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 11122 46799999999888 569999996421
Q ss_pred --CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.. .++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l 199 (269)
T cd03294 129 VQGVPRAEREERAAEALELVGLEGWEHKY---------PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 11 124566778888877665443 3589999999999999999999976
Q ss_pred -----c--c-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----K--K-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. . .++|| .|. + +.||+|++|++|+++
T Consensus 200 ~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 240 (269)
T cd03294 200 QDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240 (269)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1 1 25663 332 2 349999999999974
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=269.80 Aligned_cols=177 Identities=25% Similarity=0.360 Sum_probs=138.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEeccc-ccHHH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIAS-VELET 509 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~-l~~~~ 509 (677)
.++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---- 76 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI---- 76 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc----
Confidence 4789999999975 3699999999999999999999999999999999999986 59999999988742 2
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
+...+|+.++|++|++.+|..|++||
T Consensus 77 ------------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~~~ 102 (249)
T PRK14253 77 ------------------------------------------------------DVADLRIKVGMVFQKPNPFPMSIYEN 102 (249)
T ss_pred ------------------------------------------------------chHHHHhheeEEecCCCcCcccHHHH
Confidence 45577889999999999999999999
Q ss_pred cccCC---CCC-----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RCH-----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~s-----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. ... ++++.++++..++.+.+.. .++. ...+||||||||++||||++++|+++
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 177 (249)
T PRK14253 103 VAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD---RLKS--HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177 (249)
T ss_pred HHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH---Hhhc--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 97431 111 1334556777777654421 1222 46799999999999999999999976
Q ss_pred -------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||||++|++|+++
T Consensus 178 ~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~ 223 (249)
T PRK14253 178 PIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELV 223 (249)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1234563 22 233 39999999999974
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=283.10 Aligned_cols=179 Identities=25% Similarity=0.382 Sum_probs=137.5
Q ss_pred cEEEEeeeEEeCCC-----------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 436 TIKFKNVSLRYRDN-----------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 436 ~I~fknVsFsY~~~-----------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
-++++|++++|+.+ ...+++|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999877
Q ss_pred ccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--ccc
Q psy845 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLF 582 (677)
Q Consensus 505 l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LF 582 (677)
.+.+ +...+|++++||+|+| .++
T Consensus 88 ~~~~-------------------------------------------------------~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 88 MKDD-------------------------------------------------------EWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred CCHH-------------------------------------------------------HHHHHhCceEEEecCchhhcC
Confidence 6211 3445778899999998 466
Q ss_pred -ccchhhcccc----CC-CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-
Q psy845 583 -NGTIRYNLDP----FG-RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK- 651 (677)
Q Consensus 583 -sgTIrENI~~----~~-~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL- 651 (677)
..|+.||+.. .. ..+.+ .+.++++.+++.+ +-++. ...+||||||||++||||++++|+++
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~------~~~~~--~p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP------NLINR--YPHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh------HHhcC--CcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5899999852 11 23333 3445666666632 11222 46799999999999999999999976
Q ss_pred -----------------------cc-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----------------------KK-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------------~~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .| .+. -||||+||++|+++
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25562 33 333 39999999999985
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=273.87 Aligned_cols=180 Identities=27% Similarity=0.357 Sum_probs=137.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~ 509 (677)
.-++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.+.+
T Consensus 23 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~--- 97 (271)
T PRK14238 23 VVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS--- 97 (271)
T ss_pred eEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc---
Confidence 359999999999753 59999999999999999999999999999999999987 69999999999875320
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|++++|++|++.+|..|++||
T Consensus 98 -----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~en 124 (271)
T PRK14238 98 -----------------------------------------------------YSVEELRTNVGMVFQKPNPFPKSIYDN 124 (271)
T ss_pred -----------------------------------------------------ccHHHHhhhEEEEecCCccccccHHHH
Confidence 034567889999999999999999999
Q ss_pred cccCC---CCCh-----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RCHD-----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~sd-----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. +.++ +++.++++..++.+.+.. .++. .+.+||||||||++||||++++|+++
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---~~~~--~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD 199 (271)
T PRK14238 125 VTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKD---RLHD--NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199 (271)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHH---HHhc--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCC
Confidence 97421 1222 223445555544332221 1222 57899999999999999999999976
Q ss_pred -------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||||++|++|+++
T Consensus 200 ~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 200 PISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN 245 (271)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 1234563 22 333 49999999999974
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=269.52 Aligned_cols=179 Identities=25% Similarity=0.352 Sum_probs=141.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++.+.+
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~---- 76 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA---- 76 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc----
Confidence 3789999999974 359999999999999999999999999999999999865 48999999999875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|+||++.+|++|++||+
T Consensus 77 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~t~~~nl 104 (250)
T PRK14266 77 ----------------------------------------------------VDVVELRKKVGMVFQKPNPFPKSIFDNV 104 (250)
T ss_pred ----------------------------------------------------ccHHHHhhheEEEecCCccCcchHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCC---CC-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RC-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+.. .. + ++++.++++.+++.+++..+ ++. .+.+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~ 179 (250)
T PRK14266 105 AYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LDK--SALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP 179 (250)
T ss_pred HhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---HhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCH
Confidence 7431 11 1 23456678888887765432 333 57799999999999999999999976
Q ss_pred ------------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. ...||+|++|++|+++
T Consensus 180 ~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~ 224 (250)
T PRK14266 180 ISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEII 224 (250)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEE
Confidence 1234553 222 2348999999999974
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=264.14 Aligned_cols=168 Identities=24% Similarity=0.376 Sum_probs=134.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ .++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 65 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL----------- 65 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-----------
Confidence 368999999962 56899999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC-C
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF-G 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~-~ 594 (677)
+ ..|+.++||+|++.+|. .|++||+.+. .
T Consensus 66 -----------------------------------------------~--~~~~~i~~v~q~~~~~~~~t~~en~~~~~~ 96 (213)
T TIGR01277 66 -----------------------------------------------A--PYQRPVSMLFQENNLFAHLTVRQNIGLGLH 96 (213)
T ss_pred -----------------------------------------------C--hhccceEEEeccCccCCCCcHHHHHHhHhh
Confidence 2 24678999999998886 5999999632 1
Q ss_pred -C-----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 -R-----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 -~-----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. ..++++.++++..++.+...+.| .+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~ 167 (213)
T TIGR01277 97 PGLKLNAEQQEKVVDAAQQVGIADYLDRLP---------EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM 167 (213)
T ss_pred ccCCccHHHHHHHHHHHHHcCcHHHhhCCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 1 12345777888888876655433 589999999999999999999876
Q ss_pred -----c--c-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----K--K-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
. . .++|| .| .+. .||++++|++|+++
T Consensus 168 ~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~ 208 (213)
T TIGR01277 168 LALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK 208 (213)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE
Confidence 1 1 25563 22 233 49999999999974
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=272.37 Aligned_cols=178 Identities=30% Similarity=0.439 Sum_probs=134.7
Q ss_pred EEEEeeeEEeCCC-------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHH
Q psy845 437 IKFKNVSLRYRDN-------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 437 I~fknVsFsY~~~-------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~ 509 (677)
++++||+++|++. .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~- 81 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK- 81 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH-
Confidence 7899999999631 34699999999999999999999999999999999999999999999999998765110
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--cc-ccch
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LF-NGTI 586 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LF-sgTI 586 (677)
+...+|++++|++|++. ++ ..|+
T Consensus 82 ------------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~~tv 107 (265)
T TIGR02769 82 ------------------------------------------------------QRRAFRRDVQLVFQDSPSAVNPRMTV 107 (265)
T ss_pred ------------------------------------------------------HHHHHhhceEEEecChhhhcCCCCCH
Confidence 22346778999999873 43 4799
Q ss_pred hhccccC----CC----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------
Q psy845 587 RYNLDPF----GR----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------- 651 (677)
Q Consensus 587 rENI~~~----~~----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------- 651 (677)
+||+... .. ..++++.++++..++.+.. .+. .+.+||||||||++||||++++|+++
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~--~~~~LSgGe~qrv~laral~~~p~illLDEPt~ 179 (265)
T TIGR02769 108 RQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED------ADK--LPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179 (265)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh------hhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9998421 11 1223456666666663211 111 56799999999999999999999976
Q ss_pred -----------------ccc-ccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 -----------------KKS-GVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~~~-~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. +. .||+|++|++|+++
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 180 NLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 112 5673 332 33 49999999999974
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=269.03 Aligned_cols=170 Identities=28% Similarity=0.367 Sum_probs=137.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----------- 67 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL----------- 67 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-----------
Confidence 4689999999753 699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
+. .|+.++|++|++.+|.+ |++||+.+..
T Consensus 68 -----------------------------------------------~~--~~~~i~~~~q~~~~~~~~t~~~nl~~~~~ 98 (232)
T cd03300 68 -----------------------------------------------PP--HKRPVNTVFQNYALFPHLTVFENIAFGLR 98 (232)
T ss_pred -----------------------------------------------Ch--hhcceEEEecccccCCCCcHHHHHHHHHH
Confidence 22 25689999999999864 9999996421
Q ss_pred ------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 ------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 ------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
...++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l 169 (232)
T cd03300 99 LKKLPKAEIKERVAEALDLVQLEGYANRK---------PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM 169 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 11234567778888887765543 3689999999999999999999976
Q ss_pred -----c--c-cccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 -----K--K-SGVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
. . .++|| . ..+. .||||++|++|+++
T Consensus 170 ~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 170 QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1 1 26673 2 2333 48999999999973
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=269.63 Aligned_cols=179 Identities=26% Similarity=0.344 Sum_probs=138.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
-|+++|++++|++. .+|+|+||++++||++||+||||||||||+++|+|+.+| ++|+|.+||+++.+.+
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 79 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG---- 79 (253)
T ss_pred eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc----
Confidence 48999999999753 699999999999999999999999999999999999763 4899999999876530
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+....|+.++|++|++.+|++|++||+
T Consensus 80 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~eni 107 (253)
T PRK14261 80 ----------------------------------------------------ADVVALRRKIGMVFQRPNPFPKSIYENV 107 (253)
T ss_pred ----------------------------------------------------cchhhhhceEEEEecCCccCcccHHHHH
Confidence 0234667889999999999999999999
Q ss_pred ccCCC---C-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFGR---C-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~~---~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+... . . ++++.++++..++.+.+... ++. .+.+||||||||++||||++++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~ 182 (253)
T PRK14261 108 AYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDR---LHD--SALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182 (253)
T ss_pred HhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHH---hhc--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 75321 1 1 23455666776665443221 222 56799999999999999999999976
Q ss_pred ------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||+|++|++|+++
T Consensus 183 ~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 183 IATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI 227 (253)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 1234562 22 233 49999999999974
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=267.65 Aligned_cols=170 Identities=28% Similarity=0.369 Sum_probs=135.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~----------- 67 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV----------- 67 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+ ..|+.++|+||++.+|++ |++||+.+...
T Consensus 68 -----------------------------------------------~--~~~~~i~~~~q~~~~~~~~t~~enl~~~~~ 98 (237)
T TIGR00968 68 -----------------------------------------------H--ARDRKIGFVFQHYALFKHLTVRDNIAFGLE 98 (237)
T ss_pred -----------------------------------------------C--hhhcCEEEEecChhhccCCcHHHHHHhHHH
Confidence 2 136789999999999965 99999964321
Q ss_pred ---C----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 596 ---C----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 596 ---~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. .++++.++++..++.++..+ ...+|||||+||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~ 169 (237)
T TIGR00968 99 IRKHPKAKIKARVEELLELVQLEGLGDR---------YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL 169 (237)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 12345666666666544433 34689999999999999999999976
Q ss_pred -----c--cc-ccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 -----K--KS-GVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~~-~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
. .+ ++|+ . +.+. .||||++|++|+++
T Consensus 170 ~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 170 RSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 1 12 5673 2 2233 39999999999974
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=270.82 Aligned_cols=184 Identities=24% Similarity=0.317 Sum_probs=142.3
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccH
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVEL 507 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~ 507 (677)
..+.|+++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+.+| ++|+|.+||.++...+
T Consensus 13 ~~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~- 89 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS- 89 (265)
T ss_pred CCceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc-
Confidence 45679999999999753 699999999999999999999999999999999999875 7999999998764210
Q ss_pred HHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchh
Q psy845 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR 587 (677)
Q Consensus 508 ~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIr 587 (677)
...+...+|+.++|++|++.+|.+|++
T Consensus 90 -----------------------------------------------------~~~~~~~~~~~i~~~~q~~~~~~~tv~ 116 (265)
T PRK14252 90 -----------------------------------------------------PEVDPIEVRMRISMVFQKPNPFPKSIF 116 (265)
T ss_pred -----------------------------------------------------cccCHHHHhccEEEEccCCcCCcchHH
Confidence 000345678899999999999999999
Q ss_pred hccccCC---C-----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 588 YNLDPFG---R-----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 588 ENI~~~~---~-----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
||+.+.. . ..++++.++++.+++.+.+... .+. ...+||||||||++||||++++|+++
T Consensus 117 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~g 191 (265)
T PRK14252 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDR---LGD--LAFNLSGGQQQRLCIARALATDPEILLFDEPTSA 191 (265)
T ss_pred HHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHH---HhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 9997431 1 1235567778877775433322 111 46799999999999999999999976
Q ss_pred ---------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 192 LD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 192 LDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELI 239 (265)
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1224552 22 23 359999999999974
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=270.21 Aligned_cols=153 Identities=25% Similarity=0.374 Sum_probs=123.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||.++...+
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 83 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD---- 83 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc----
Confidence 48999999999753 69999999999999999999999999999999999986 48999999998874320
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|+.|++||+
T Consensus 84 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 111 (264)
T PRK14243 84 ----------------------------------------------------VDPVEVRRRIGMVFQKPNPFPKSIYDNI 111 (264)
T ss_pred ----------------------------------------------------cChHHHhhhEEEEccCCccccccHHHHH
Confidence 0345678899999999999988999999
Q ss_pred ccCCC---C---ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 591 DPFGR---C---HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 591 ~~~~~---~---sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.+... . .++++.++++.+++.+++... .+. .+.+||||||||++||||++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LSgGq~qrv~laral~~~p~ll 173 (264)
T PRK14243 112 AYGARINGYKGDMDELVERSLRQAALWDEVKDK---LKQ--SGLSLSGGQQQRLCIARAIAVQPEVI 173 (264)
T ss_pred HhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH---hcC--CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 75321 1 134456677888876655322 122 56799999999999999999999976
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=279.99 Aligned_cols=179 Identities=22% Similarity=0.346 Sum_probs=136.5
Q ss_pred cEEEEeeeEEeCCC--------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH
Q psy845 436 TIKFKNVSLRYRDN--------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 507 (677)
Q Consensus 436 ~I~fknVsFsY~~~--------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~ 507 (677)
-++++|++++|+.. ...+++||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+.+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999877621
Q ss_pred HHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--ccc-c
Q psy845 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFN-G 584 (677)
Q Consensus 508 ~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LFs-g 584 (677)
. +.+.+|++++||+|||. |+. .
T Consensus 85 ~-------------------------------------------------------~~~~~r~~i~~v~Q~~~~~l~p~~ 109 (327)
T PRK11308 85 E-------------------------------------------------------AQKLLRQKIQIVFQNPYGSLNPRK 109 (327)
T ss_pred H-------------------------------------------------------HHHHHhCCEEEEEcCchhhcCCcc
Confidence 1 33456777888888873 443 4
Q ss_pred chhhcccc----CCCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 585 TIRYNLDP----FGRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 585 TIrENI~~----~~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
|+.+|+.. ....+ .+++.++++.+++.+ ++++. ...+||||||||++|||||+.+|+++
T Consensus 110 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~--~p~~LSgGq~QRv~iArAL~~~P~lLilDEP 181 (327)
T PRK11308 110 KVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR--YPHMFSGGQRQRIAIARALMLDPDVVVADEP 181 (327)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC--CCccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 78877741 11111 244677788887742 23343 45799999999999999999999976
Q ss_pred -------------------cc-cccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 -------------------KK-SGVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------------~~-~~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
.. .+.|+ . +.+. -||||+||++|+|+
T Consensus 182 ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 182 VSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 01 25562 2 3343 49999999999985
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=266.58 Aligned_cols=174 Identities=23% Similarity=0.254 Sum_probs=127.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~--------- 69 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL--------- 69 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCC---------
Confidence 478999999974 3699999999999999999999999999999999999 479999999999998776
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
+... .|..++||+|++.+|.+ |++||+..
T Consensus 70 -------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~ 100 (243)
T TIGR01978 70 -------------------------------------------------EPDERARAGLFLAFQYPEEIPGVSNLEFLRS 100 (243)
T ss_pred -------------------------------------------------CHHHhhccceEeeeccccccCCcCHHHHHHH
Confidence 3323 24457788888877754 78888742
Q ss_pred CC----C------CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------
Q psy845 593 FG----R------CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------- 651 (677)
Q Consensus 593 ~~----~------~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------- 651 (677)
.. . .+ ++++.++++..++.+.. .+.. .+.+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 173 (243)
T TIGR01978 101 ALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRS-VNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173 (243)
T ss_pred HHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccc-cccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 10 0 11 12345555555553211 1211 12359999999999999999999976
Q ss_pred -----------------cccccce---ec---cccc--ccEEEEEeCCeeC
Q psy845 652 -----------------KKSGVNI---TR---PVTS--CDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~~~~~TI---Ls---TI~~--aDrIlVLd~GrIV 677 (677)
..+++|| .| .+.. ||+|++|++|+++
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~ 224 (243)
T TIGR01978 174 GLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV 224 (243)
T ss_pred cCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE
Confidence 1135663 23 2333 7999999999974
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=269.06 Aligned_cols=180 Identities=28% Similarity=0.357 Sum_probs=140.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~ 509 (677)
+.++++||+++|++ +++++|+||++++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+.+
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~--- 80 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR--- 80 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc---
Confidence 46999999999975 3599999999999999999999999999999999999985 4899999999875320
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+.+.+|++++|++|++.+|+.|++||
T Consensus 81 -----------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~en 107 (259)
T PRK14260 81 -----------------------------------------------------ININRLRRQIGMVFQRPNPFPMSIYEN 107 (259)
T ss_pred -----------------------------------------------------cchHhhhhheEEEecccccCCccHHHH
Confidence 044567889999999999999999999
Q ss_pred cccCC----CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG----RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~----~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. ... ++.+.++++.+++.+++... ++. .+.+||||||||++||||++++|+++
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 182 (259)
T PRK14260 108 VAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---LNK--SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---hcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 96421 111 23356778888887654332 222 56799999999999999999999976
Q ss_pred -------------cccccce---ec---cc-ccccEEEEEe-----CCeeC
Q psy845 652 -------------KKSGVNI---TR---PV-TSCDKVLVMD-----NGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI-~~aDrIlVLd-----~GrIV 677 (677)
..+++|| .| .+ +.|||+++|+ +|+++
T Consensus 183 ~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 183 PIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 1234563 22 22 3499999998 59874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-31 Score=268.88 Aligned_cols=179 Identities=26% Similarity=0.372 Sum_probs=137.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~---- 77 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG---- 77 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc----
Confidence 48999999999753 599999999999999999999999999999999999974 7999999999874320
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYN 589 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrEN 589 (677)
.+...+|+.++|++|++.+|. .|++||
T Consensus 78 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~~n 105 (258)
T PRK14241 78 ----------------------------------------------------VDPVAVRRTIGMVFQRPNPFPTMSIRDN 105 (258)
T ss_pred ----------------------------------------------------cChHHHhcceEEEccccccCCCCcHHHH
Confidence 034467888999999999886 699999
Q ss_pred cccCC---C-CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---R-CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~-~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. . .+ ++++.++++..++.+++.. ..+. ...+||||||||++||||++++|+++
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 180 (258)
T PRK14241 106 VVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD---RLDK--PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180 (258)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---HhhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 96321 1 11 2345666777777544322 1222 56799999999999999999999976
Q ss_pred -------------cccccce---ec---cc-ccccEEEEEe------CCeeC
Q psy845 652 -------------KKSGVNI---TR---PV-TSCDKVLVMD------NGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI-~~aDrIlVLd------~GrIV 677 (677)
..+++|| .| .+ +.||||++|+ +|+++
T Consensus 181 ~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 181 PISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 1234562 22 23 3599999997 79874
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=281.69 Aligned_cols=172 Identities=32% Similarity=0.470 Sum_probs=135.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~---------- 108 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR---------- 108 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc----------
Confidence 59999999999753 599999999999999999999999999999999999999999999999998653
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+ ...|+.+||+||++.++ +.|++||+.+++
T Consensus 109 ------------------------------------------------~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~ 139 (340)
T PRK13536 109 ------------------------------------------------A-RLARARIGVVPQFDNLDLEFTVRENLLVFG 139 (340)
T ss_pred ------------------------------------------------h-HHHhccEEEEeCCccCCCCCcHHHHHHHHH
Confidence 2 35678888888888886 679999997432
Q ss_pred ---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+.++ +.++++..++ ++..++ ...+||||||||++||||++.+|+++
T Consensus 140 ~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~--~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~ 210 (340)
T PRK13536 140 RYFGMSTREIEAVIPSLLEFARL-------ESKADA--RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 210 (340)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCC-------chhhCC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 122222 3344444444 333444 34689999999999999999999976
Q ss_pred --------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +-||||++|++|+++
T Consensus 211 l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 211 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI 251 (340)
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 1246673 22 23 349999999999984
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=276.96 Aligned_cols=173 Identities=34% Similarity=0.570 Sum_probs=139.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++||+.+|+++ ..+|+||||++++||.+|++|||||||||++|+|+|+..|++|+|.++|.|..+
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~----------- 71 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK----------- 71 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCcc-----------
Confidence 47889999999842 369999999999999999999999999999999999999999999999998755
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+..+.|+++||+||++.++ ..|++||+.+..
T Consensus 72 ------------------------------------------------~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~ 103 (293)
T COG1131 72 ------------------------------------------------EPAKVRRRIGYVPQEPSLYPELTVRENLEFFA 103 (293)
T ss_pred ------------------------------------------------CHHHHHhheEEEccCCCCCccccHHHHHHHHH
Confidence 2446677777777777766 569999997543
Q ss_pred C-------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R-------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~-------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
. ..++++.++++..++.+.- .....+||+|||||++||+||+.+|+++
T Consensus 104 ~l~~~~~~~~~~~~~~~l~~~~L~~~~---------~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~ 174 (293)
T COG1131 104 RLYGLSKEEAEERIEELLELFGLEDKA---------NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRRE 174 (293)
T ss_pred HHhCCChhHHHHHHHHHHHHcCCchhh---------CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHH
Confidence 1 1245788899999887621 1145789999999999999999999976
Q ss_pred --------cccc-cce--e----ccccc-ccEEEEEeCCeeC
Q psy845 652 --------KKSG-VNI--T----RPVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~-~TI--L----sTI~~-aDrIlVLd~GrIV 677 (677)
..++ +|| . +.+.. ||||++|++|+++
T Consensus 175 ~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~ 216 (293)
T COG1131 175 IWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII 216 (293)
T ss_pred HHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEE
Confidence 2234 674 2 22333 9999999999974
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=267.11 Aligned_cols=179 Identities=23% Similarity=0.304 Sum_probs=137.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE--L---SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~--p---~~G~I~IdG~dI~~l~~~~~ 510 (677)
-|+++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 78 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN---- 78 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc----
Confidence 4899999999975 369999999999999999999999999999999999975 5 5999999999875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|+.|++||+
T Consensus 79 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~~nl 106 (252)
T PRK14255 79 ----------------------------------------------------EDVVQLRKQVGMVFQQPNPFPFSIYENV 106 (252)
T ss_pred ----------------------------------------------------ccHHHhcCeEEEEECCCccCCCcHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCC---CC-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RC-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+.. .. . ++++.++++.+++.+.+.. ..+. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~---~~~~--~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~ 181 (252)
T PRK14255 107 IYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD---HLHE--SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP 181 (252)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhh---HHhc--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 6421 11 1 2345556677766544321 1222 56799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..++.|+ .| .+ +.||||++|++|+++
T Consensus 182 ~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14255 182 ISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLI 226 (252)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1123452 22 23 349999999999974
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=266.39 Aligned_cols=179 Identities=25% Similarity=0.379 Sum_probs=135.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----ccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-----~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+.+
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~---- 77 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR---- 77 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc----
Confidence 3789999999974 36999999999999999999999999999999999999874 899999999875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYN 589 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrEN 589 (677)
.+...+|+.++|++|++.+|. .|++||
T Consensus 78 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~t~~en 105 (252)
T PRK14272 78 ----------------------------------------------------VDPVAMRRRVGMVFQKPNPFPTMSVFDN 105 (252)
T ss_pred ----------------------------------------------------cCHHHhhceeEEEeccCccCcCCCHHHH
Confidence 034467888999999999987 599999
Q ss_pred cccCC---CC-ChHHHHH----HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RC-HDTELWD----ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~-sdeeI~~----Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.... .. .+++..+ .++..++.+. +++.+++ ...+||||||||++||||++++|+++
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 180 (252)
T PRK14272 106 VVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKT--PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180 (252)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 96421 11 2233322 3344444432 2333444 46799999999999999999999976
Q ss_pred -------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. -||||++|++|+++
T Consensus 181 ~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 181 PASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226 (252)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1234553 22 233 48999999999974
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=261.99 Aligned_cols=168 Identities=22% Similarity=0.353 Sum_probs=134.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++. ..|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 66 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT----------- 66 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC-----------
Confidence 6899999999742 2399999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
+. .++.++|+||++.+|.+ |++||+.+..
T Consensus 67 -----------------------------------------------~~--~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 97 (232)
T PRK10771 67 -----------------------------------------------PP--SRRPVSMLFQENNLFSHLTVAQNIGLGLN 97 (232)
T ss_pred -----------------------------------------------Ch--hhccEEEEecccccccCCcHHHHHhcccc
Confidence 22 14678999999988874 9999996421
Q ss_pred -C-----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 -R-----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 -~-----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. ..++++.++++..++.+.+.+.| ..||||||||++||||++++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~ 168 (232)
T PRK10771 98 PGLKLNAAQREKLHAIARQMGIEDLLARLP---------GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM 168 (232)
T ss_pred cccCCCHHHHHHHHHHHHHcCcHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1 12345778888888877665543 589999999999999999999876
Q ss_pred -------cc-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -------KK-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
.. .++|+ .| .+. .||||++|++|+++
T Consensus 169 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 169 LTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA 209 (232)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 11 25563 22 233 48999999999974
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=272.46 Aligned_cols=180 Identities=25% Similarity=0.374 Sum_probs=139.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~ 509 (677)
..++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.+.+
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~--- 112 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD--- 112 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc---
Confidence 45899999999975 369999999999999999999999999999999999997 68999999999875430
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|++++|++|++.+|..|++||
T Consensus 113 -----------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~en 139 (285)
T PRK14254 113 -----------------------------------------------------VDPVALRRRIGMVFQKPNPFPKSIYDN 139 (285)
T ss_pred -----------------------------------------------------cchHhhhccEEEEecCCccCcCCHHHH
Confidence 034567889999999999998899999
Q ss_pred cccCC---CC---ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 590 LDPFG---RC---HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 590 I~~~~---~~---sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+.+.. .. .++++.++++..++.+.+... ++. +..+||||||||++||||++++|+++
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~--~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~ 214 (285)
T PRK14254 140 VAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ---LDS--SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPV 214 (285)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH---HhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 96421 11 234577788888776544321 122 56799999999999999999999976
Q ss_pred -----------cccccce---ecc---cc-cccEEE-EEeCCeeC
Q psy845 652 -----------KKSGVNI---TRP---VT-SCDKVL-VMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---LsT---I~-~aDrIl-VLd~GrIV 677 (677)
..+++|| .|. +. -|||++ +|++|+++
T Consensus 215 ~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 215 ATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV 259 (285)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE
Confidence 1123453 222 33 499975 57999974
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=252.91 Aligned_cols=141 Identities=37% Similarity=0.641 Sum_probs=120.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE----------- 67 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc-----------
Confidence 4689999999753 599999999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+ ..+|+.++|++|++.+|.+ |++||+.
T Consensus 68 -----------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~~~---- 95 (173)
T cd03230 68 -----------------------------------------------P-EEVKRRIGYLPEEPSLYENLTVRENLK---- 95 (173)
T ss_pred -----------------------------------------------h-HhhhccEEEEecCCccccCCcHHHHhh----
Confidence 3 4567889999999988875 9999973
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------ 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------ 651 (677)
||||||||++||||++++|+++
T Consensus 96 ----------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 96 ----------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141 (173)
T ss_pred ----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999976
Q ss_pred cccccce---ec---ccc-cccEEEEEeCCee
Q psy845 652 KKSGVNI---TR---PVT-SCDKVLVMDNGQA 676 (677)
Q Consensus 652 ~~~~~TI---Ls---TI~-~aDrIlVLd~GrI 676 (677)
..++.|+ .| .+. .||+|++|++|++
T Consensus 142 ~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 142 KKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 1134552 22 233 5899999999985
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=264.38 Aligned_cols=171 Identities=23% Similarity=0.355 Sum_probs=129.0
Q ss_pred EEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC---CCccEEEECCEecccccHHHhh
Q psy845 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 437 I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~---p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
+.++||+++|+++ .+++++|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~------- 76 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP------- 76 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh-------
Confidence 5799999999865 3679999999999999999999999999999999999999 999999999987521
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhcc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNL 590 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI 590 (677)
..+|+.++|++|++.+|++ |++||+
T Consensus 77 ------------------------------------------------------~~~~~~i~~~~q~~~~~~~~tv~enl 102 (226)
T cd03234 77 ------------------------------------------------------DQFQKCVAYVRQDDILLPGLTVRETL 102 (226)
T ss_pred ------------------------------------------------------HHhcccEEEeCCCCccCcCCcHHHHH
Confidence 2467788999999888876 999999
Q ss_pred ccCCC----C-ChHH-----HHH-HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 591 DPFGR----C-HDTE-----LWD-ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 591 ~~~~~----~-sdee-----I~~-Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
.+... . .+++ ..+ .++..++.+. .++ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~--~~~~LS~G~~qrl~laral~~~p~illlDEP~~g 173 (226)
T cd03234 103 TYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI-------GGN--LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173 (226)
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHHhhcchhh-------hcc--cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcC
Confidence 64211 0 0111 111 2222222111 111 45799999999999999999999876
Q ss_pred ----------------cccccce---eccc-----ccccEEEEEeCCeeC
Q psy845 652 ----------------KKSGVNI---TRPV-----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------~~~~~TI---LsTI-----~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|.. +.||+|++|++|+++
T Consensus 174 LD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 1235562 3332 349999999999984
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=269.23 Aligned_cols=179 Identities=24% Similarity=0.306 Sum_probs=138.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~ 509 (677)
..++++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 20 ~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~--- 94 (276)
T PRK14271 20 PAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR--- 94 (276)
T ss_pred cEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc---
Confidence 35899999999975 3699999999999999999999999999999999999986 7999999999876540
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
+...+|++++|++|++.+|+.|++||
T Consensus 95 ------------------------------------------------------~~~~~~~~i~~v~q~~~l~~~tv~en 120 (276)
T PRK14271 95 ------------------------------------------------------DVLEFRRRVGMLFQRPNPFPMSIMDN 120 (276)
T ss_pred ------------------------------------------------------hhHHHhhheEEeccCCccCCccHHHH
Confidence 23467889999999999999999999
Q ss_pred cccCC----CCChHHH----HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG----RCHDTEL----WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~----~~sdeeI----~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. ..++++. .++++..++.+.... -++. .+.+||||||||++||||++++|+++
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~l~~--~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD 195 (276)
T PRK14271 121 VLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD---RLSD--SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195 (276)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhh---HhhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 97431 1233333 344555555433211 1111 56799999999999999999999976
Q ss_pred -------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + ..||||++|++|+++
T Consensus 196 ~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~ 241 (276)
T PRK14271 196 PTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLV 241 (276)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1123553 222 2 349999999999974
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=251.57 Aligned_cols=142 Identities=44% Similarity=0.735 Sum_probs=123.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++..+++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 69 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL----------- 69 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhc-----------
Confidence 468999999976434699999999999999999999999999999999999999999999999988766
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
+...+|++++|++|++.+|+.|++||+
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~~~~~~~~~t~~e~l------ 96 (171)
T cd03228 70 -----------------------------------------------DLESLRKNIAYVPQDPFLFSGTIRENI------ 96 (171)
T ss_pred -----------------------------------------------CHHHHHhhEEEEcCCchhccchHHHHh------
Confidence 555678889999999999999999997
Q ss_pred ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------cc
Q psy845 597 HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-----------------------KK 653 (677)
Q Consensus 597 sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~ 653 (677)
||||||||++||||++++|+++ ..
T Consensus 97 ---------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 97 ---------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143 (171)
T ss_pred ---------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876 12
Q ss_pred cccce---e---cccccccEEEEEeCCe
Q psy845 654 SGVNI---T---RPVTSCDKVLVMDNGQ 675 (677)
Q Consensus 654 ~~~TI---L---sTI~~aDrIlVLd~Gr 675 (677)
+++|| . ..+..||++++|++|+
T Consensus 144 ~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 144 KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 34563 2 2345599999999996
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=253.29 Aligned_cols=143 Identities=38% Similarity=0.544 Sum_probs=122.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL----------- 67 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc-----------
Confidence 478999999975 3699999999999999999999999999999999999999999999999988765
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh--HHHHhhhcccccccccccc-cchhhccccC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE--LETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~--~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+ ....|+.++|++|++.+|. .|++||+...
T Consensus 68 -----------------------------------------------~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 68 -----------------------------------------------EDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred -----------------------------------------------chhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 3 4567889999999999885 5999999642
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------------- 651 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------------- 651 (677)
||||||||++||||++++|+++
T Consensus 101 ------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 101 ------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144 (178)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999976
Q ss_pred --ccc-ccce---ec---ccc-cccEEEEEeCCe
Q psy845 652 --KKS-GVNI---TR---PVT-SCDKVLVMDNGQ 675 (677)
Q Consensus 652 --~~~-~~TI---Ls---TI~-~aDrIlVLd~Gr 675 (677)
..+ ++|+ .| .+. .||+|++|++|+
T Consensus 145 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 145 SLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 112 4663 22 233 499999999996
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=267.39 Aligned_cols=180 Identities=29% Similarity=0.386 Sum_probs=140.5
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----ccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-----~G~I~IdG~dI~~l~~~~ 509 (677)
+.++++||+++|++. .+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++...
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~---- 79 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER---- 79 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc----
Confidence 469999999999653 5999999999999999999999999999999999999985 78888888876422
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
..+...+|+.++|++|++.+|..|++||
T Consensus 80 ----------------------------------------------------~~~~~~~~~~i~~~~q~~~l~~~tv~en 107 (261)
T PRK14258 80 ----------------------------------------------------RVNLNRLRRQVSMVHPKPNLFPMSVYDN 107 (261)
T ss_pred ----------------------------------------------------ccchHHhhccEEEEecCCccCcccHHHH
Confidence 0034567889999999999999999999
Q ss_pred cccCC---C-CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---R-CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~-~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. . .+ ++++.++++..++.+++..+ .+. .+.+||||||||++||||++++|+++
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD 182 (261)
T PRK14258 108 VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK---IHK--SALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182 (261)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH---hcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 96421 1 11 23456778888876655432 122 46799999999999999999999976
Q ss_pred ------------c--c-cccce---ec---cc-ccccEEEEEeC-----CeeC
Q psy845 652 ------------K--K-SGVNI---TR---PV-TSCDKVLVMDN-----GQAL 677 (677)
Q Consensus 652 ------------~--~-~~~TI---Ls---TI-~~aDrIlVLd~-----GrIV 677 (677)
. . .++|| .| .+ +.||||++|++ |+++
T Consensus 183 ~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 1 1 25663 22 23 34899999999 9874
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=258.30 Aligned_cols=158 Identities=25% Similarity=0.336 Sum_probs=127.3
Q ss_pred cEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC---CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~---p~~G~I~IdG~dI~~l~~~~~ 510 (677)
.+.++||+|.|+.+ +.++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||.++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~----- 77 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF----- 77 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc-----
Confidence 47899999999753 4579999999999999999999999999999999999999 8999999999987654
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYN 589 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrEN 589 (677)
+ ...|++++|++|++.+|. .|++||
T Consensus 78 -----------------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~ 103 (202)
T cd03233 78 -----------------------------------------------------A-EKYPGEIIYVSEEDVHFPTLTVRET 103 (202)
T ss_pred -----------------------------------------------------h-hhhcceEEEEecccccCCCCcHHHH
Confidence 2 346778999999988886 599999
Q ss_pred cccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 590 I~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
+.+.... + .+. ....||||||||++||||++++|+++
T Consensus 104 l~~~~~~---------~--------------~~~--~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~ 158 (202)
T cd03233 104 LDFALRC---------K--------------GNE--FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL 158 (202)
T ss_pred Hhhhhhh---------c--------------ccc--chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH
Confidence 9643110 0 122 34689999999999999999999976
Q ss_pred ------ccc-ccc-e--ecc-----cccccEEEEEeCCeeC
Q psy845 652 ------KKS-GVN-I--TRP-----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~-~~T-I--LsT-----I~~aDrIlVLd~GrIV 677 (677)
..+ +.| + .++ .+.||+|++|++|+++
T Consensus 159 ~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 159 KCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 112 344 2 222 2459999999999974
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=272.07 Aligned_cols=180 Identities=25% Similarity=0.302 Sum_probs=138.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~ 509 (677)
..++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+||.++....
T Consensus 38 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~--- 112 (286)
T PRK14275 38 PHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF--- 112 (286)
T ss_pred eEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc---
Confidence 458999999999753 59999999999999999999999999999999999865 49999999999875430
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|++++|++|++.+|++|++||
T Consensus 113 -----------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~en 139 (286)
T PRK14275 113 -----------------------------------------------------TDEVLLRKKIGMVFQKPNPFPKSIFDN 139 (286)
T ss_pred -----------------------------------------------------cchHHhhhcEEEECCCCCCCccCHHHH
Confidence 023457889999999999998899999
Q ss_pred cccCC---CC-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RC-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. .. + ++++.++++..++.+.+. +.++. ...+||||||||++||||++++|+++
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~--~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD 214 (286)
T PRK14275 140 IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLDK--NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214 (286)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 97431 11 1 234556677777654332 22233 56799999999999999999999976
Q ss_pred -------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
...++|| .| .+ ..||||++|++|+++
T Consensus 215 ~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 215 PKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV 260 (286)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1134452 22 22 349999999999974
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=275.14 Aligned_cols=163 Identities=26% Similarity=0.438 Sum_probs=128.0
Q ss_pred EeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccc
Q psy845 445 RYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524 (677)
Q Consensus 445 sY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf 524 (677)
+|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------------------- 60 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE------------------- 60 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-------------------
Confidence 5653 3699999999999999999999999999999999999999999999999987543
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC---CCC---
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG---RCH--- 597 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~---~~s--- 597 (677)
...+|++++|+||++.+|.. |++||+.+.. ..+
T Consensus 61 ----------------------------------------~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 100 (302)
T TIGR01188 61 ----------------------------------------PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDE 100 (302)
T ss_pred ----------------------------------------HHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 23567889999999888864 9999996432 112
Q ss_pred -hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------c
Q psy845 598 -DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------K 652 (677)
Q Consensus 598 -deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~ 652 (677)
++++.++++..++.+.. +. ...+||||||||++||||++++|+++ .
T Consensus 101 ~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 101 AEERAEELLELFELGEAA-------DR--PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171 (302)
T ss_pred HHHHHHHHHHHcCChhHh-------CC--chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 23466677777765432 22 45789999999999999999999976 1
Q ss_pred ccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 653 KSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.+++|| .|. + +.||||++|++|+++
T Consensus 172 ~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~ 203 (302)
T TIGR01188 172 EEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203 (302)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 235663 222 3 249999999999974
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=258.61 Aligned_cols=148 Identities=29% Similarity=0.390 Sum_probs=119.4
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccccc
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~ 518 (677)
++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++++++..
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~---------- 68 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSK---------- 68 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchh----------
Confidence 4699999975 3699999999999999999999999999999999999999999999999997654100
Q ss_pred CCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC---
Q psy845 519 QDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG--- 594 (677)
Q Consensus 519 q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~--- 594 (677)
...+..|+.++|++|++.+|. .|++||+.+..
T Consensus 69 --------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 69 --------------------------------------------KASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred --------------------------------------------hHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 023356788999999999986 79999996421
Q ss_pred CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 ~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.. .++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 105 KLSKKEKREKKKEALEKVGLNLKLKQ---------KIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 11 23456677777777544322 35689999999999999999999976
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=272.15 Aligned_cols=180 Identities=27% Similarity=0.391 Sum_probs=137.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~ 509 (677)
..|+++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||.++.+..
T Consensus 44 ~~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~--- 118 (305)
T PRK14264 44 AKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG--- 118 (305)
T ss_pred ceEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc---
Confidence 468999999999753 69999999999999999999999999999999999986 68999999999875430
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|+.++|++|++.+|++|++||
T Consensus 119 -----------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~en 145 (305)
T PRK14264 119 -----------------------------------------------------VNLVELRKRVGMVFQSPNPFPKSIREN 145 (305)
T ss_pred -----------------------------------------------------ccHHHHhhceEEEccCCccccccHHHH
Confidence 034567888999999999998999999
Q ss_pred cccCCC--------------------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch
Q psy845 590 LDPFGR--------------------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649 (677)
Q Consensus 590 I~~~~~--------------------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~ 649 (677)
+.+... ..++++.++++.+++.+.+... .+. .+.+||||||||++|||||+++|+
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgGq~qrv~LAraL~~~p~ 220 (305)
T PRK14264 146 ISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR---LDD--NALGLSGGQQQRLCIARCLAVDPE 220 (305)
T ss_pred HHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH---hcC--ccccCCHHHHHHHHHHHHHhcCCC
Confidence 964210 0123456667777665433221 111 568999999999999999999999
Q ss_pred hhc-----------------------ccccce---ec---cc-ccccEE-EEEeCCeeC
Q psy845 650 KKK-----------------------KSGVNI---TR---PV-TSCDKV-LVMDNGQAL 677 (677)
Q Consensus 650 IL~-----------------------~~~~TI---Ls---TI-~~aDrI-lVLd~GrIV 677 (677)
++. .+++|| .| .+ ..|||| ++|++|+++
T Consensus 221 lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 221 VILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 761 123452 22 22 349997 578999974
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=283.84 Aligned_cols=175 Identities=27% Similarity=0.331 Sum_probs=134.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++++.-.|+. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 29 ~~~~~~~~~~~~--~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~-------- 98 (400)
T PRK10070 29 LSKEQILEKTGL--SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDA-------- 98 (400)
T ss_pred ccHHHHHhhcCC--eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHH--------
Confidence 445555555532 2489999999999999999999999999999999999999999999999998776110
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhcccccccccccc-cchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+... .|++++||+|++.+|. .|++||+.+..
T Consensus 99 -----------------------------------------------~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~ 131 (400)
T PRK10070 99 -----------------------------------------------ELREVRRKKIAMVFQSFALMPHMTVLDNTAFGM 131 (400)
T ss_pred -----------------------------------------------HHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHH
Confidence 1122 2467999999999985 69999997431
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 132 ~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~---------~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~ 202 (400)
T PRK10070 132 ELAGINAEERREKALDALRQVGLENYAHSY---------PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202 (400)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCChhhhcC---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 111 34567788888887665543 3589999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|.. +.||||++|++|+++
T Consensus 203 l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~ 244 (400)
T PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244 (400)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 11 35673 3332 359999999999974
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=262.15 Aligned_cols=176 Identities=29% Similarity=0.434 Sum_probs=135.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++-.|... ++|+||||++++||+++++||||+||||+++.++|+.+|.+|+|.++|.|++..+
T Consensus 4 L~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p---------- 71 (237)
T COG0410 4 LEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP---------- 71 (237)
T ss_pred eeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCC----------
Confidence 7899999999764 6999999999999999999999999999999999999999999999999999984
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~ 595 (677)
+.+-.|..|+||||.-.+| +.|++||+..+..
T Consensus 72 -----------------------------------------------~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 72 -----------------------------------------------PHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred -----------------------------------------------HHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 4556688888888888888 6799999976432
Q ss_pred C-ChHHHHHHHHHccchhhHhhhhc---ccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------------
Q psy845 596 C-HDTELWDALEKSHLKSKVVTMRS---KLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------------- 652 (677)
Q Consensus 596 ~-sdeeI~~Al~~a~l~efI~~LP~---GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------------- 652 (677)
. .+++-. ....++--+-+|. -.+. ++.+|||||+|-+||||||+.+|+++.
T Consensus 105 ~~~~~~~~----~~~~e~v~~lFP~Lker~~~--~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~ 178 (237)
T COG0410 105 ARRDKEAQ----ERDLEEVYELFPRLKERRNQ--RAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 178 (237)
T ss_pred cccccccc----cccHHHHHHHChhHHHHhcC--cccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHH
Confidence 1 110100 0011111222232 2222 689999999999999999999999761
Q ss_pred ------ccccce-e------cccccccEEEEEeCCeeC
Q psy845 653 ------KSGVNI-T------RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------~~~~TI-L------sTI~~aDrIlVLd~GrIV 677 (677)
..+.|| + ...+-|||-+||++|+|+
T Consensus 179 i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv 216 (237)
T COG0410 179 IKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216 (237)
T ss_pred HHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE
Confidence 124454 1 234559999999999985
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=268.43 Aligned_cols=172 Identities=22% Similarity=0.320 Sum_probs=135.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC--------ccEEEECCEecccccHH
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS--------SGQIKIDDFDIASVELE 508 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~--------~G~I~IdG~dI~~l~~~ 508 (677)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+.
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~--- 76 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI--- 76 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC---
Confidence 6899999999653 6999999999999999999999999999999999999998 99999999988766
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc-ccccchh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LFNGTIR 587 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~-LFsgTIr 587 (677)
+...+|+.++|+||++. +|+.|++
T Consensus 77 -------------------------------------------------------~~~~~~~~~~~v~q~~~~~~~~tv~ 101 (272)
T PRK13547 77 -------------------------------------------------------DAPRLARLRAVLPQAAQPAFAFSAR 101 (272)
T ss_pred -------------------------------------------------------CHHHHHhhcEEecccCCCCCCCcHH
Confidence 55667778899999975 5788999
Q ss_pred hccccCCC--------C---ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHh---------cc
Q psy845 588 YNLDPFGR--------C---HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL---------RK 647 (677)
Q Consensus 588 ENI~~~~~--------~---sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALL---------r~ 647 (677)
||+.+... . .++.+.++++..++.+.. +. ...+||||||||++||||++ ++
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 102 EIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-------GR--DVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred HHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-------cC--CcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 99964310 1 123356667777665432 11 46799999999999999999 48
Q ss_pred chhh------------------------ccc-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 648 TKKK------------------------KKS-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 648 p~IL------------------------~~~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
|+++ ..+ ++|+ .| .+ +.||+|++|++|+++
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~ 234 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 8865 112 5663 22 23 359999999999974
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=265.22 Aligned_cols=178 Identities=21% Similarity=0.329 Sum_probs=136.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~ 512 (677)
-++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++...+.
T Consensus 4 ~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~----- 76 (262)
T PRK09984 4 IIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR----- 76 (262)
T ss_pred EEEEeeEEEEeCCe--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc-----
Confidence 48999999999753 6999999999999999999999999999999999999986 4999999998754300
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
...+...+|++++|+||++.+|. .|++||+.
T Consensus 77 ------------------------------------------------~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 108 (262)
T PRK09984 77 ------------------------------------------------LARDIRKSRANTGYIFQQFNLVNRLSVLENVL 108 (262)
T ss_pred ------------------------------------------------cchhHHHHHhheEEEccccccccCCcHHHHHH
Confidence 00033567888999999998886 59999996
Q ss_pred cCCC---------------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 592 PFGR---------------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 592 ~~~~---------------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
+... ..++++.++++..++.+...+ ...+||||||||++||||++.+|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEP 179 (262)
T PRK09984 109 IGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ---------RVSTLSGGQQQRVAIARALMQQAKVILADEP 179 (262)
T ss_pred hhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC---------CccccCHHHHHHHHHHHHHhcCCCEEEecCc
Confidence 4210 112345667777776544322 45689999999999999999999976
Q ss_pred -----------------c--c-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -----------------K--K-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~--~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
. . .++|+ .|.. +.||||++|++|+++
T Consensus 180 t~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 180 IASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232 (262)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1 1 25663 3322 349999999999973
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=263.36 Aligned_cols=169 Identities=30% Similarity=0.418 Sum_probs=135.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++ .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~----------- 66 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL----------- 66 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcC-----------
Confidence 468999999974 389999999999999999999999999999999999999999999999988664
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+. .|+.+++++|++.+|. .|++||+.+..
T Consensus 67 -----------------------------------------------~~--~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 97 (235)
T cd03299 67 -----------------------------------------------PP--EKRDISYVPQNYALFPHMTVYKNIAYGLK 97 (235)
T ss_pred -----------------------------------------------Ch--hHcCEEEEeecCccCCCccHHHHHHHHHH
Confidence 22 2578999999998884 79999996421
Q ss_pred --CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.. .++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l 168 (235)
T cd03299 98 KRKVDKKEIERKVLEIAEMLGIDHLLNRK---------PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL 168 (235)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHHhcC---------cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH
Confidence 11 234466778888877665443 4689999999999999999999876
Q ss_pred -----c--c-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----K--K-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
. . .++|+ .| .+. -||+|++|++|+++
T Consensus 169 ~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~ 209 (235)
T cd03299 169 REELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209 (235)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 0 1 25673 22 233 39999999999974
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=275.22 Aligned_cols=180 Identities=24% Similarity=0.382 Sum_probs=131.3
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC----CCccEEEECCEecccccHHHh
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
++++|++++|+++. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.++
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~- 82 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE- 82 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH-
Confidence 78999999997542 359999999999999999999999999999999999998 48999999999987773221
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhccccccccc--cc-ccch
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPV--LF-NGTI 586 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~--LF-sgTI 586 (677)
...+| ++++||+|++. +. ..|+
T Consensus 83 ------------------------------------------------------~~~~r~~~i~~v~Q~~~~~l~p~~~v 108 (326)
T PRK11022 83 ------------------------------------------------------RRNLVGAEVAMIFQDPMTSLNPCYTV 108 (326)
T ss_pred ------------------------------------------------------HHHHhCCCEEEEecCchhhcCCcCCH
Confidence 11222 35777777764 22 2345
Q ss_pred hhc----cccCCCC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------
Q psy845 587 RYN----LDPFGRC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------- 651 (677)
Q Consensus 587 rEN----I~~~~~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------- 651 (677)
.+| +...... ..+++.++++.+++.+.... ++. ...+||||||||++||||++.+|+++
T Consensus 109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----l~~--~p~~LSgGq~QRv~iArAL~~~P~llilDEPts 182 (326)
T PRK11022 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR----LDV--YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTT 182 (326)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----HhC--CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 444 3322111 23457778888888653211 111 46799999999999999999999976
Q ss_pred -----------------c-ccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -----------------K-KSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~-~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
. ..+.|+ .| .+ +-||||+||++|+|+
T Consensus 183 ~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 183 ALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1 125562 33 33 359999999999985
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=259.40 Aligned_cols=168 Identities=26% Similarity=0.386 Sum_probs=134.5
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----------- 67 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----------- 67 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc-----------
Confidence 468999999975 3699999999999999999999999999999999999999999999999876432
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
. ++.++|+||++.+|. .|++||+.+..
T Consensus 68 -----------------------------------------------~----~~~~~~~~q~~~~~~~~t~~~~~~~~~~ 96 (223)
T TIGR03740 68 -----------------------------------------------D----LHKIGSLIESPPLYENLTARENLKVHTT 96 (223)
T ss_pred -----------------------------------------------c----cccEEEEcCCCCccccCCHHHHHHHHHH
Confidence 1 246888888888775 69999996421
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..+++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L 167 (223)
T TIGR03740 97 LLGLPDSRIDEVLNIVDLTNTGKK---------KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI 167 (223)
T ss_pred HcCCCHHHHHHHHHHcCCcHHHhh---------hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHH
Confidence 2345677788888888765433 35689999999999999999999976
Q ss_pred ---cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 168 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 168 RSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 1235563 22 23 359999999999974
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=271.78 Aligned_cols=174 Identities=27% Similarity=0.356 Sum_probs=135.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++|++..|+.. .+++|||++|+.||.+|+.|||||||||++++|+|+..|++|.|.+||..+.+.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~--------- 70 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS--------- 70 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchh---------
Confidence 47788999999764 5899999999999999999999999999999999999999999999999443331
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
....-.++||+|+|+.-|| +.|+++||+++-
T Consensus 71 ------------------------------------------------~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl 102 (345)
T COG1118 71 ------------------------------------------------NLAVRDRKVGFVFQHYALFPHMTVADNIAFGL 102 (345)
T ss_pred ------------------------------------------------ccchhhcceeEEEechhhcccchHHhhhhhcc
Confidence 1122235777777887777 789999998763
Q ss_pred C-----C----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------
Q psy845 595 R-----C----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------- 652 (677)
Q Consensus 595 ~-----~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------- 652 (677)
+ . .+.++.+.++.+++...-++ ...+||||||||+|+|||+...|++|.
T Consensus 103 ~~~~~~p~~~~~r~rv~elL~lvqL~~la~r---------yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr 173 (345)
T COG1118 103 KVRKERPSEAEIRARVEELLRLVQLEGLADR---------YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173 (345)
T ss_pred cccccCCChhhHHHHHHHHHHHhcccchhhc---------CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHH
Confidence 1 2 23345566777777655444 357999999999999999999999871
Q ss_pred ------------ccccc-e--ec----ccccccEEEEEeCCeeC
Q psy845 653 ------------KSGVN-I--TR----PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------~~~~T-I--Ls----TI~~aDrIlVLd~GrIV 677 (677)
..+.| + .| +.+-||||+||+||+|.
T Consensus 174 ~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie 217 (345)
T COG1118 174 KELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217 (345)
T ss_pred HHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee
Confidence 12333 2 33 34569999999999973
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=265.61 Aligned_cols=167 Identities=20% Similarity=0.277 Sum_probs=130.5
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 68 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----------- 68 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----------
Confidence 689999999975 3699999999999999999999999999999999999999999999999987543
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
++.++|++|++.+|. .|++||+.+..
T Consensus 69 ----------------------------------------------------~~~~~~v~q~~~~~~~~tv~e~l~~~~~ 96 (255)
T PRK11248 69 ----------------------------------------------------GAERGVVFQNEGLLPWRNVQDNVAFGLQ 96 (255)
T ss_pred ----------------------------------------------------CCcEEEEeCCCccCCCCcHHHHHHhHHH
Confidence 124688888888875 69999986421
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 167 (255)
T PRK11248 97 LAGVEKMQRLEIAHQMLKKVGLEGAEKR---------YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167 (255)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 112 2345666777766544322 45789999999999999999999876
Q ss_pred -----c--c-cccce---ecc---c-ccccEEEEEe--CCeeC
Q psy845 652 -----K--K-SGVNI---TRP---V-TSCDKVLVMD--NGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---LsT---I-~~aDrIlVLd--~GrIV 677 (677)
. . .++|| .|. + ..||+|++|+ +|+++
T Consensus 168 ~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~ 210 (255)
T PRK11248 168 QTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210 (255)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEE
Confidence 1 1 25663 232 2 3499999999 58874
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=266.93 Aligned_cols=180 Identities=27% Similarity=0.380 Sum_probs=140.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~ 509 (677)
.-|+++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||+++.+.+
T Consensus 19 ~~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~--- 93 (274)
T PRK14265 19 SVFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ--- 93 (274)
T ss_pred ceEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc---
Confidence 369999999999753 699999999999999999999999999999999999864 6999999999875420
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|++++|++|++.+|+.|++||
T Consensus 94 -----------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~~n 120 (274)
T PRK14265 94 -----------------------------------------------------INSVKLRRQVGMVFQRPNPFPKSIYEN 120 (274)
T ss_pred -----------------------------------------------------chhHHHhhcEEEEccCCccccccHHHH
Confidence 034467889999999999998899999
Q ss_pred cccCCC------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 590 LDPFGR------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 590 I~~~~~------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+..... ..++++.++++.+++.+++... .+. ...+||||||||++||||++++|+++
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~ 195 (274)
T PRK14265 121 IAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---LKE--KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPI 195 (274)
T ss_pred HHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---hcC--CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 975321 1234466678888876554321 222 46799999999999999999999976
Q ss_pred -----------cccccce---ec---cc-ccccEEEEEe---------CCeeC
Q psy845 652 -----------KKSGVNI---TR---PV-TSCDKVLVMD---------NGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---Ls---TI-~~aDrIlVLd---------~GrIV 677 (677)
..+++|| .| .+ +.||||++|+ +|+++
T Consensus 196 ~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 196 STRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 1234553 22 23 3599999998 78874
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=267.00 Aligned_cols=175 Identities=29% Similarity=0.413 Sum_probs=130.9
Q ss_pred cEEEEeeeEEeCCC-------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHH
Q psy845 436 TIKFKNVSLRYRDN-------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 508 (677)
Q Consensus 436 ~I~fknVsFsY~~~-------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~ 508 (677)
-++++||+++|++. ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--- 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG--- 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC---
Confidence 38999999999631 23699999999999999999999999999999999999999999999999988654
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--ccc-cc
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFN-GT 585 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LFs-gT 585 (677)
+.+..|+.++|+||++. ++. .|
T Consensus 81 -------------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 81 -------------------------------------------------------DYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred -------------------------------------------------------chhhHhccEEEEecCchhhcCcchh
Confidence 22334456777777764 332 36
Q ss_pred hhhccccC--------CCCChHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 586 IRYNLDPF--------GRCHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 586 IrENI~~~--------~~~sdeeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
+.+|+... ....++++.++++..++. +.. +. ...+||||||||++||||++++|+++
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~--~~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------SY--YPHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------hc--CchhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 67766421 111234567788888874 222 11 34689999999999999999999976
Q ss_pred -----------------c--c-cccce---ec---cccc-ccEEEEEeCCeeC
Q psy845 652 -----------------K--K-SGVNI---TR---PVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~--~-~~~TI---Ls---TI~~-aDrIlVLd~GrIV 677 (677)
. . .++|| .| .+.. ||||++|++|+++
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229 (267)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1 1 25663 22 3343 9999999999974
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-30 Score=264.93 Aligned_cols=179 Identities=24% Similarity=0.296 Sum_probs=141.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
.+.+++.+++|++ .++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~---- 81 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG---- 81 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc----
Confidence 4789999999965 3699999999999999999999999999999999999987 7999999999875430
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|+.++|++|++.+|+.|++||+
T Consensus 82 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 109 (261)
T PRK14263 82 ----------------------------------------------------VDPVVVRRYIGMVFQQPNPFSMSIFDNV 109 (261)
T ss_pred ----------------------------------------------------cchHhhhhceEEEecCCccccccHHHHH
Confidence 0334678889999999999999999999
Q ss_pred ccCCC------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 591 DPFGR------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 591 ~~~~~------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
.++.. ..++++.++++.+++.+.+.... +. ...+||||||||++||||++++|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~---~~--~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~ 184 (261)
T PRK14263 110 AFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL---KV--SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIA 184 (261)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhh---hC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence 75321 12346778888888876654321 11 56799999999999999999999976
Q ss_pred ----------cccccce---ec---cc-ccccEEEEEe--------CCeeC
Q psy845 652 ----------KKSGVNI---TR---PV-TSCDKVLVMD--------NGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---Ls---TI-~~aDrIlVLd--------~GrIV 677 (677)
..+++|+ .| .+ +.||||++|+ +|+++
T Consensus 185 ~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 185 TRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 1234552 22 23 3499999996 89874
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-30 Score=262.67 Aligned_cols=177 Identities=25% Similarity=0.384 Sum_probs=127.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe-----cccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD-----IASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d-----I~~l~~~~~ 510 (677)
-++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.+ +.+.+..
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~-- 81 (258)
T PRK11701 6 LLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA-- 81 (258)
T ss_pred eEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH--
Confidence 48999999999753 69999999999999999999999999999999999999999999999988 5544110
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccc--cc-ccch
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPV--LF-NGTI 586 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~--LF-sgTI 586 (677)
.... .|+.++|++|++. ++ +.|+
T Consensus 82 -----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~~~~~ 108 (258)
T PRK11701 82 -----------------------------------------------------ERRRLLRTEWGFVHQHPRDGLRMQVSA 108 (258)
T ss_pred -----------------------------------------------------HHHHHhhcceEEEeeCcccccCccccH
Confidence 1112 3567888888873 33 3577
Q ss_pred hhcccc----CCCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------
Q psy845 587 RYNLDP----FGRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------- 651 (677)
Q Consensus 587 rENI~~----~~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------- 651 (677)
.||+.. ..... ++++.++++..++.+ ...+. .+.+||||||||++||||++++|+++
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~--~~~~LS~Gq~qrl~laral~~~p~llllDEPt~ 180 (258)
T PRK11701 109 GGNIGERLMAVGARHYGDIRATAGDWLERVEIDA------ARIDD--LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTG 180 (258)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh------hHHhC--CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 788742 11111 122233333333321 00111 57899999999999999999999976
Q ss_pred -----------------ccc-ccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----------------KKS-GVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~~~-~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+ +.|| .| .+. .||+|++|++|+++
T Consensus 181 ~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 181 GLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 112 5563 22 233 49999999999974
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-30 Score=263.06 Aligned_cols=184 Identities=29% Similarity=0.366 Sum_probs=140.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.-
T Consensus 9 ~~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~------------- 73 (257)
T PRK14246 9 DVFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKV------------- 73 (257)
T ss_pred hheeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEE-------------
Confidence 459999999999753 69999999999999999999999999999999999999999998887632
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~ 593 (677)
.+||.+....+...+|+.++|++|++.+|.+ |++||+.+.
T Consensus 74 ---------------------------------------~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 114 (257)
T PRK14246 74 ---------------------------------------LYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP 114 (257)
T ss_pred ---------------------------------------EECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH
Confidence 2333333333566789999999999999975 999999742
Q ss_pred C---CC-ChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 594 G---RC-HDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 594 ~---~~-sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
. .. .++ ++.++++..++++++... .+. .+..||||||||++||||++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~--~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~ 189 (257)
T PRK14246 115 LKSHGIKEKREIKKIVEECLRKVGLWKEVYDR---LNS--PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNS 189 (257)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCccchhh---hcC--CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 1 11 222 245667777776544211 122 56789999999999999999999976
Q ss_pred ---------cccccce---e---ccc-ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---T---RPV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---L---sTI-~~aDrIlVLd~GrIV 677 (677)
..+++|| . +.+ ..||++++|++|+++
T Consensus 190 ~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~ 231 (257)
T PRK14246 190 QAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELV 231 (257)
T ss_pred HHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1134553 2 233 459999999999974
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-30 Score=273.26 Aligned_cols=181 Identities=28% Similarity=0.386 Sum_probs=131.9
Q ss_pred ccEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~ 509 (677)
.-++++|++++|+.+ ...+++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+.+++..
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~- 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK- 89 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH-
Confidence 358999999999642 246999999999999999999999999999999999999996 99999999999877221
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccc--ccc-ccc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDP--VLF-NGT 585 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~--~LF-sgT 585 (677)
+...+| ++|+||+||+ .++ ..|
T Consensus 90 ------------------------------------------------------~~~~~r~~~i~~v~Q~~~~~l~p~~~ 115 (330)
T PRK09473 90 ------------------------------------------------------ELNKLRAEQISMIFQDPMTSLNPYMR 115 (330)
T ss_pred ------------------------------------------------------HHHHHhcCCEEEEEcCchhhcCCCCC
Confidence 222233 4688888887 344 356
Q ss_pred hhhccc----cCCCCChH----HHHHHHHHccchhhHhhhhcccCCC-CCCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 586 IRYNLD----PFGRCHDT----ELWDALEKSHLKSKVVTMRSKLDSD-VQGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 586 IrENI~----~~~~~sde----eI~~Al~~a~l~efI~~LP~GldT~-v~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
+.+|+. ..+..+.+ ++.++++.+++. ++.+.. -...+||||||||++||||++.+|+++
T Consensus 116 v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~-------~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 116 VGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP-------EARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------ChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 777663 22222322 344556665553 222221 157899999999999999999999976
Q ss_pred -------------------cc-cccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 -------------------KK-SGVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------------~~-~~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
.. .+.|+ . +.+. -||||+||++|+|+
T Consensus 189 ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 189 TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 11 25562 2 3343 49999999999985
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-30 Score=274.25 Aligned_cols=173 Identities=24% Similarity=0.316 Sum_probs=136.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+++ |++++|++. .+ |+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+...
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~--------- 67 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEK--------- 67 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc---------
Confidence 566 999999642 23 9999999999999999999999999999999999999999999998755300
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
..+....|++++||+|++.+|. .|++||+.++.
T Consensus 68 ---------------------------------------------~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 68 ---------------------------------------------GICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred ---------------------------------------------ccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 0023345788999999999995 69999997642
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------- 651 (677)
...++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDR---------YPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 3345678888888888765544 34689999999999999999999976
Q ss_pred -ccc-ccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -KKS-GVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~-~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+ ++|+ .|.. .-||||++|++|+++
T Consensus 174 l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~ 208 (352)
T PRK11144 174 LAREINIPILYVSHSLDEILRLADRVVVLEQGKVK 208 (352)
T ss_pred HHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 112 5562 3322 349999999999974
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-30 Score=252.66 Aligned_cols=150 Identities=29% Similarity=0.387 Sum_probs=122.8
Q ss_pred cEEEEeeeEEeCCC----CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC--CCCccEEEECCEecccccHHH
Q psy845 436 TIKFKNVSLRYRDN----WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV--ELSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 436 ~I~fknVsFsY~~~----~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y--~p~~G~I~IdG~dI~~l~~~~ 509 (677)
.++++||+++|++. ..++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~----- 77 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK----- 77 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch-----
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999987632
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhh
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRY 588 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrE 588 (677)
..+|++++|++|++.+|. .|++|
T Consensus 78 --------------------------------------------------------~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 78 --------------------------------------------------------RSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred --------------------------------------------------------HhhhheEEEccCcccCCCCCcHHH
Confidence 145678888999988886 59999
Q ss_pred ccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 589 NLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 589 NI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
|+.+.. + . .+||||||||++||||++++|+++
T Consensus 102 ~i~~~~-----------~-~-------------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l 150 (194)
T cd03213 102 TLMFAA-----------K-L-------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV 150 (194)
T ss_pred HHHHHH-----------H-h-------------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 985310 0 0 089999999999999999999976
Q ss_pred -------cccccce---eccc-----ccccEEEEEeCCeeC
Q psy845 652 -------KKSGVNI---TRPV-----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~~~TI---LsTI-----~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|.. +.||||++|++|+++
T Consensus 151 ~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 151 MSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence 1235672 3333 239999999999974
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-30 Score=250.18 Aligned_cols=144 Identities=28% Similarity=0.498 Sum_probs=120.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++| +++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 68 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS--------- 68 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC---------
Confidence 38999999998 899999999999999999999999999999999999999999999999887651
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc----cccccchhhccc
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP----VLFNGTIRYNLD 591 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~----~LFsgTIrENI~ 591 (677)
+.+..|++++|++|++ ..++.|++||+.
T Consensus 69 ------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 69 ------------------------------------------------PRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred ------------------------------------------------HHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 2345677899999985 344689999996
Q ss_pred cCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 592 PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 592 ~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
+... ||||||||++||||++++|+++
T Consensus 101 ~~~~----------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 101 LSSL----------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred HHhh----------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 4210 9999999999999999999976
Q ss_pred ----cccccce---ec---cccc-ccEEEEEeCCee
Q psy845 652 ----KKSGVNI---TR---PVTS-CDKVLVMDNGQA 676 (677)
Q Consensus 652 ----~~~~~TI---Ls---TI~~-aDrIlVLd~GrI 676 (677)
..+++|+ .| .+.+ ||+|++|++|++
T Consensus 147 l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 147 IRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 1235663 22 2333 999999999985
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=253.57 Aligned_cols=169 Identities=27% Similarity=0.354 Sum_probs=129.2
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
||+++|++. .+ |+||++++ |++||+||||||||||+++|+|+++|++|+|.+||.++.+...
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~------------- 66 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRK------------- 66 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc-------------
Confidence 899999764 34 99999999 9999999999999999999999999999999999998754300
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC-C--
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR-C-- 596 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~-~-- 596 (677)
..+....|++++|++|++.+|. .|++||+.+... .
T Consensus 67 -----------------------------------------~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~ 105 (214)
T cd03297 67 -----------------------------------------KINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRN 105 (214)
T ss_pred -----------------------------------------hhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCH
Confidence 0023356788999999999985 699999974321 1
Q ss_pred --ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------
Q psy845 597 --HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------- 651 (677)
Q Consensus 597 --sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------- 651 (677)
.++++.++++..++.+.... ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (214)
T cd03297 106 REDRISVDELLDLLGLDHLLNR---------YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176 (214)
T ss_pred HHHHHHHHHHHHHcCCHhHhhc---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 12345556666655433221 56799999999999999999999976
Q ss_pred -ccc-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -KKS-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .| .+ +.||++++|++|+++
T Consensus 177 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 177 IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211 (214)
T ss_pred HHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 112 5663 22 23 359999999999974
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=270.65 Aligned_cols=180 Identities=23% Similarity=0.378 Sum_probs=131.5
Q ss_pred EEEEeeeEEeCC--CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC----CCccEEEECCEecccccHHHh
Q psy845 437 IKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 437 I~fknVsFsY~~--~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
++++|++++|+. +...+++|+||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+.+..+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~- 82 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE- 82 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH-
Confidence 789999999963 22469999999999999999999999999999999999986 58999999999987762221
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhcccccccccc--c-ccch
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVL--F-NGTI 586 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~L--F-sgTI 586 (677)
...+ |+.++||+|++.. . ..|+
T Consensus 83 ------------------------------------------------------~~~~~~~~i~~v~Q~~~~~l~p~~tv 108 (330)
T PRK15093 83 ------------------------------------------------------RRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred ------------------------------------------------------HHHHhCCCEEEEecCcchhcCccccH
Confidence 1122 2357777777652 2 3567
Q ss_pred hhccccC-------CC------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--
Q psy845 587 RYNLDPF-------GR------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-- 651 (677)
Q Consensus 587 rENI~~~-------~~------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-- 651 (677)
.+|+... +. ..++++.++++..++.+.-.. ++. ...+||||||||++|||||+.+|+++
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~~~--~p~~LSgG~~QRv~iArAL~~~P~llil 182 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----MRS--FPYELTEGECQKVMIAIALANQPRLLIA 182 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----HhC--CchhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 7776310 00 012456778888888643111 111 45799999999999999999999976
Q ss_pred ----------------------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ----------------------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .+.|| .| .+ +-||||+||++|+|+
T Consensus 183 DEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 183 DEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238 (330)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 11 25563 33 33 349999999999985
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=249.56 Aligned_cols=145 Identities=21% Similarity=0.280 Sum_probs=122.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ----------- 67 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-----------
Confidence 4689999999753 599999999999999999999999999999999999999999999999886443
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
+ ..+|++++|++|++.++ +.|++||+.+..
T Consensus 68 -----------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 99 (201)
T cd03231 68 -----------------------------------------------R-DSIARGLLYLGHAPGIKTTLSVLENLRFWHA 99 (201)
T ss_pred -----------------------------------------------c-HHhhhheEEeccccccCCCcCHHHHHHhhcc
Confidence 2 35678899999998876 689999997543
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
...++++.++++..++.++.. + ...+||||||||++||||++++|+++
T Consensus 100 ~~~~~~~~~~l~~~~l~~~~~-------~--~~~~LS~G~~qrl~laral~~~p~ll 147 (201)
T cd03231 100 DHSDEQVEEALARVGLNGFED-------R--PVAQLSAGQQRRVALARLLLSGRPLW 147 (201)
T ss_pred cccHHHHHHHHHHcCChhhhc-------C--chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 235667888888888865432 2 35689999999999999999999976
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=256.20 Aligned_cols=87 Identities=23% Similarity=0.375 Sum_probs=71.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhh-hh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLR-SR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~-~~ 513 (677)
++++|++++|++. ++++|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+..+.+ +.
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 6899999999753 599999999999999999999999999999999999 479999999999998776443332 34
Q ss_pred cccccCCccccc
Q psy845 514 LSVIPQDPVLFN 525 (677)
Q Consensus 514 i~~v~q~~~lf~ 525 (677)
+++++|++.+++
T Consensus 80 i~~~~q~~~~~~ 91 (248)
T PRK09580 80 IFMAFQYPVEIP 91 (248)
T ss_pred eEEEecCchhcc
Confidence 566666555443
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=250.06 Aligned_cols=145 Identities=27% Similarity=0.366 Sum_probs=121.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~----------- 68 (204)
T PRK13538 2 LEARNLACERDER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ----------- 68 (204)
T ss_pred eEEEEEEEEECCE--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-----------
Confidence 6889999999753 599999999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~ 595 (677)
+ ...|+++++++|++.++. .|++||+.+...
T Consensus 69 -----------------------------------------------~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 100 (204)
T PRK13538 69 -----------------------------------------------R-DEYHQDLLYLGHQPGIKTELTALENLRFYQR 100 (204)
T ss_pred -----------------------------------------------h-HHhhhheEEeCCccccCcCCcHHHHHHHHHH
Confidence 2 245678889999888775 699999964321
Q ss_pred ----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 596 ----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 596 ----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~ll 151 (204)
T PRK13538 101 LHGPGDDEALWEALAQVGLAGFEDV---------PVRQLSAGQQRRVALARLWLTRAPLW 151 (204)
T ss_pred hcCccHHHHHHHHHHHcCCHHHhhC---------ChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 334567788888888755422 35689999999999999999999976
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=272.62 Aligned_cols=170 Identities=25% Similarity=0.336 Sum_probs=130.6
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
|++++|++. .+ |+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~------------- 66 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK------------- 66 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcc-------------
Confidence 899999643 34 9999999999999999999999999999999999999999999998754300
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-CCC-
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG-RCH- 597 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~-~~s- 597 (677)
.......|++++||+|++.+|. .|++||+.++. ...
T Consensus 67 -----------------------------------------~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~ 105 (354)
T TIGR02142 67 -----------------------------------------GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARP 105 (354)
T ss_pred -----------------------------------------ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccCh
Confidence 0012346788999999999996 59999997532 111
Q ss_pred ---hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------
Q psy845 598 ---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------- 651 (677)
Q Consensus 598 ---deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------- 651 (677)
++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~l~~~gL~~~~~~---------~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~ 176 (354)
T TIGR02142 106 SERRISFERVIELLGIGHLLGR---------LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER 176 (354)
T ss_pred hHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 2235667777766554433 45789999999999999999999876
Q ss_pred -ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ ++|+ .|. + .-||+|++|++|+++
T Consensus 177 l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 211 (354)
T TIGR02142 177 LHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA 211 (354)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 112 5662 332 3 249999999999974
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=257.65 Aligned_cols=173 Identities=25% Similarity=0.334 Sum_probs=128.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC----CccEEEECCEecccccHHHhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL----SSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p----~~G~I~IdG~dI~~l~~~~~~ 511 (677)
.++++|++++| + .++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.+++..
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~------ 74 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC------ 74 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc------
Confidence 58999999999 3 3699999999999999999999999999999999999999 999999999987432
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc-ccc--cchhh
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LFN--GTIRY 588 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~-LFs--gTIrE 588 (677)
+ ..++.++||+|++. .|. .|+.+
T Consensus 75 ----------------------------------------------------~--~~~~~i~~v~q~~~~~~~~~~~~~~ 100 (254)
T PRK10418 75 ----------------------------------------------------A--LRGRKIATIMQNPRSAFNPLHTMHT 100 (254)
T ss_pred ----------------------------------------------------c--cccceEEEEecCCccccCccccHHH
Confidence 1 11345666666653 232 46666
Q ss_pred cccc-----CCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 589 NLDP-----FGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 589 NI~~-----~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
|+.. +....++++.++++..++.++.. -++. ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~--~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 174 (254)
T PRK10418 101 HARETCLALGKPADDATLTAALEAVGLENAAR----VLKL--YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVV 174 (254)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHcCCCChhh----hhhc--CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 6532 11233456788888888765310 0111 46799999999999999999999976
Q ss_pred ------------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + ..|||+++|++|+++
T Consensus 175 ~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~ 220 (254)
T PRK10418 175 AQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV 220 (254)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 11 25563 222 3 349999999999974
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=245.59 Aligned_cols=145 Identities=34% Similarity=0.507 Sum_probs=121.3
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~------------ 66 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL------------ 66 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC------------
Confidence 47899999975 3699999999999999999999999999999999999999999999999998776
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCC
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH 597 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~s 597 (677)
+...+|+.++|++|
T Consensus 67 ----------------------------------------------~~~~~~~~i~~~~q-------------------- 80 (180)
T cd03214 67 ----------------------------------------------SPKELARKIAYVPQ-------------------- 80 (180)
T ss_pred ----------------------------------------------CHHHHHHHHhHHHH--------------------
Confidence 55567888999998
Q ss_pred hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cc
Q psy845 598 DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KK 653 (677)
Q Consensus 598 deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~ 653 (677)
+++..++.++..+ .+.+||||||||++||||++++|+++ ..
T Consensus 81 ------~l~~~gl~~~~~~---------~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 81 ------ALELLGLAHLADR---------PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred ------HHHHcCCHhHhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 6677777665432 45789999999999999999999976 11
Q ss_pred c-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 654 S-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 654 ~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
+ ++|+ .| .+ +.||++++|++|+++
T Consensus 146 ~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 146 ERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 2 5663 22 23 459999999999974
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=259.64 Aligned_cols=175 Identities=30% Similarity=0.447 Sum_probs=130.8
Q ss_pred EEEEeeeEEeCC-------CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHH
Q psy845 437 IKFKNVSLRYRD-------NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 437 I~fknVsFsY~~-------~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~ 509 (677)
|+++||+++|++ .++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~- 82 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA- 82 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh-
Confidence 789999999974 124699999999999999999999999999999999999999999999999988765110
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--cc-ccch
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LF-NGTI 586 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LF-sgTI 586 (677)
....+|+.++|++|++. ++ +.|+
T Consensus 83 ------------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~~t~ 108 (268)
T PRK10419 83 ------------------------------------------------------QRKAFRRDIQMVFQDSISAVNPRKTV 108 (268)
T ss_pred ------------------------------------------------------HHHHHHhcEEEEEcChhhccCCCCCH
Confidence 23456788888888873 33 4688
Q ss_pred hhccccC-C---CCCh----HHHHHHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhh----
Q psy845 587 RYNLDPF-G---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKK---- 651 (677)
Q Consensus 587 rENI~~~-~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL---- 651 (677)
+||+... . ..+. +++.++++..+ +++.. .+.+||||||||++||||++++|+++
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDE 177 (268)
T PRK10419 109 REIIREPLRHLLSLDKAERLARASEMLRAVD-----------LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE 177 (268)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHcC-----------CChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9987421 0 1111 12333444433 33211 57799999999999999999999976
Q ss_pred --------------------ccc-ccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 --------------------KKS-GVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~-~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+ +.|+ .| .+. -||+|++|++|+++
T Consensus 178 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 178 AVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 112 5562 22 233 49999999999974
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=248.95 Aligned_cols=149 Identities=23% Similarity=0.309 Sum_probs=121.0
Q ss_pred cEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC--CCCccEEEECCEecccccHHHhh
Q psy845 436 TIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV--ELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 436 ~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y--~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
.++++|++++|+++ .+++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-------- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-------- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--------
Confidence 48899999999752 246999999999999999999999999999999999986 489999999998752
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhcc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNL 590 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI 590 (677)
..+|++++|++|++.+|. .|++||+
T Consensus 75 ------------------------------------------------------~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (192)
T cd03232 75 ------------------------------------------------------KNFQRSTGYVEQQDVHSPNLTVREAL 100 (192)
T ss_pred ------------------------------------------------------HHhhhceEEecccCccccCCcHHHHH
Confidence 245677888889888876 4999999
Q ss_pred ccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 591 DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 591 ~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
.+.. .++ +||||||||++||||++++|+++
T Consensus 101 ~~~~---------~~~----------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~ 149 (192)
T cd03232 101 RFSA---------LLR----------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR 149 (192)
T ss_pred HHHH---------HHh----------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH
Confidence 6310 000 89999999999999999999976
Q ss_pred -----cccccce---ecc-----cccccEEEEEeC-CeeC
Q psy845 652 -----KKSGVNI---TRP-----VTSCDKVLVMDN-GQAL 677 (677)
Q Consensus 652 -----~~~~~TI---LsT-----I~~aDrIlVLd~-GrIV 677 (677)
...++|| .|. ...||||++|++ |+++
T Consensus 150 ~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 150 FLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred HHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence 1135662 332 345999999999 9975
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=256.24 Aligned_cols=178 Identities=24% Similarity=0.345 Sum_probs=126.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe-----cccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD-----IASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d-----I~~l~~~~~ 510 (677)
-++++||+++|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.+ +.+.+..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~- 79 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE- 79 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH-
Confidence 48999999999753 58999999999999999999999999999999999999999999999977 44431100
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc---cccchh
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL---FNGTIR 587 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L---FsgTIr 587 (677)
..+.+++.++|++|++.. +..|+.
T Consensus 80 -----------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~~~~~~ 106 (253)
T TIGR02323 80 -----------------------------------------------------RRRLMRTEWGFVHQNPRDGLRMRVSAG 106 (253)
T ss_pred -----------------------------------------------------HHHhhhcceEEEEeCcccccCccccHH
Confidence 011234668888888742 245777
Q ss_pred hcccc----CC-C---CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 588 YNLDP----FG-R---CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 588 ENI~~----~~-~---~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
||+.. .. . ..++++.+.++..++.+ ...+. ...+||||||||++||||++++|+++
T Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~--~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~ 178 (253)
T TIGR02323 107 ANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP------TRIDD--LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGG 178 (253)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh------hhhhc--CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 77732 11 1 11223333444443321 00111 57899999999999999999999976
Q ss_pred ----------------cc-cccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ----------------KK-SGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------~~-~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|. +. .||++++|++|+++
T Consensus 179 LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 179 LDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228 (253)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 11 25562 232 33 49999999999974
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=255.54 Aligned_cols=175 Identities=23% Similarity=0.246 Sum_probs=127.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~------- 77 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE------- 77 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC-------
Confidence 48999999999753 599999999999999999999999999999999998 6899999999999987762
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh-hccccccccccccc-chhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS-RLSVIPQDPVLFNG-TIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~-~I~~V~Qd~~LFsg-TIrENI~ 591 (677)
.+..++ .+++++|++.+|.+ |+++|+.
T Consensus 78 ---------------------------------------------------~~~~~~~~~~~~~q~~~~~~~~~~~~~l~ 106 (252)
T CHL00131 78 ---------------------------------------------------PEERAHLGIFLAFQYPIEIPGVSNADFLR 106 (252)
T ss_pred ---------------------------------------------------hhhhheeeEEEEeccccccccccHHHHHH
Confidence 222222 36667777766653 5677764
Q ss_pred cCCC----------CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------
Q psy845 592 PFGR----------CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------ 651 (677)
Q Consensus 592 ~~~~----------~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------ 651 (677)
.... .. .+++.++++..++.+. ..+... +.+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~-~~~LSgG~~qrv~la~al~~~p~llllDEPt 179 (252)
T CHL00131 107 LAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS------FLSRNV-NEGFSGGEKKRNEILQMALLDSELAILDETD 179 (252)
T ss_pred HhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh------hhcccc-ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 2110 01 1234556666665421 112211 2359999999999999999999976
Q ss_pred ------------------cccccce---ecc---ccc--ccEEEEEeCCeeC
Q psy845 652 ------------------KKSGVNI---TRP---VTS--CDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------------~~~~~TI---LsT---I~~--aDrIlVLd~GrIV 677 (677)
..+++|| .|. +.. ||+|++|++|+++
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 180 SGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE
Confidence 1235663 332 333 8999999999974
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=248.00 Aligned_cols=145 Identities=23% Similarity=0.261 Sum_probs=117.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++++.
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~----------- 68 (200)
T PRK13540 2 LDVIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD----------- 68 (200)
T ss_pred EEEEEEEEEeCCe--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC-----------
Confidence 6789999999753 599999999999999999999999999999999999999999999999877532
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
...+|++++|++|++.++ ..|++||+.+..
T Consensus 69 ------------------------------------------------~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~ 100 (200)
T PRK13540 69 ------------------------------------------------LCTYQKQLCFVGHRSGINPYLTLRENCLYDIH 100 (200)
T ss_pred ------------------------------------------------HHHHHhheEEeccccccCcCCCHHHHHHHHHh
Confidence 235678899999998886 579999997532
Q ss_pred -CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 -RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 -~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
...++++.++++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 101 FSPGAVGITELCRLFSLEHLI-------DY--PCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred cCcchHHHHHHHHHcCCchhh-------hC--ChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 11233456666666554322 22 34589999999999999999999977
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=273.43 Aligned_cols=171 Identities=26% Similarity=0.268 Sum_probs=131.8
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCE----ecccccHHHhhhhccc
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF----DIASVELETLRSRLSV 516 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~----dI~~l~~~~~~~~i~~ 516 (677)
++..+|+.. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||. ++.+.+..
T Consensus 29 ~~~~~~g~~--~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~-------- 98 (382)
T TIGR03415 29 EILDETGLV--VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAA-------- 98 (382)
T ss_pred HHHHhhCCE--EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHH--------
Confidence 455667543 5899999999999999999999999999999999999999999999996 44443100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccccccc-cchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
...++| ++++||+|++.+|+ .|++||+.++.
T Consensus 99 -----------------------------------------------~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~ 131 (382)
T TIGR03415 99 -----------------------------------------------TLRRLRTHRVSMVFQKFALMPWLTVEENVAFGL 131 (382)
T ss_pred -----------------------------------------------HHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHH
Confidence 233444 58999999999996 79999997531
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ .++..++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 132 ~~~g~~~~~~~~~a~e~le~vgL~~~~~~---------~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 132 EMQGMPEAERRKRVDEQLELVGLAQWADK---------KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 122 2345678888888766443 34689999999999999999999976
Q ss_pred --------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + +.||||++|++|+++
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRII 244 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25673 332 2 459999999999984
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=257.44 Aligned_cols=170 Identities=26% Similarity=0.363 Sum_probs=125.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++||+++|+++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. .
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----~----- 75 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA----L----- 75 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh----h-----
Confidence 58999999999743 3699999999999999999999999999999999999999999999999886321 1
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc---cccchhhcccc
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL---FNGTIRYNLDP 592 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L---FsgTIrENI~~ 592 (677)
.++.++|+||++.+ +..+++||+.+
T Consensus 76 ----------------------------------------------------~~~~i~~v~q~~~~~~~~~~~~~~~i~~ 103 (272)
T PRK15056 76 ----------------------------------------------------QKNLVAYVPQSEEVDWSFPVLVEDVVMM 103 (272)
T ss_pred ----------------------------------------------------ccceEEEeccccccccCCCcchhhheec
Confidence 12245666666543 34456676642
Q ss_pred CC-----------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 593 FG-----------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 593 ~~-----------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
.. ...++++.++++..++.+... + ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~--~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD 174 (272)
T PRK15056 104 GRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------R--QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174 (272)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------C--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 10 111234566778888765432 2 34689999999999999999999976
Q ss_pred --------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||+++++ +|+++
T Consensus 175 ~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~ 220 (272)
T PRK15056 175 VKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220 (272)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence 1235663 222 2 348999766 89874
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=250.64 Aligned_cols=173 Identities=26% Similarity=0.442 Sum_probs=133.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+++.+++.+|++- ..+++||||+++.||.+||.|||||||||+++.|..+..|++|+|.+||.|..+ ++...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 5788999999873 348999999999999999999999999999999999999999999999999877 34555555555
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR- 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~- 595 (677)
++.+..+|. ..|.||||.++++
T Consensus 80 l~~e~glY~---------------------------------------------------------RlT~rEnl~~Fa~L 102 (245)
T COG4555 80 LFGERGLYA---------------------------------------------------------RLTARENLKYFARL 102 (245)
T ss_pred ecCCcChhh---------------------------------------------------------hhhHHHHHHHHHHH
Confidence 555554544 5699999987653
Q ss_pred --CChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 596 --CHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 596 --~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
.++. ++.+..|..++.+...+ +..++|-|+|||++||||+++||+++
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~r---------Rv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~ 173 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDR---------RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHH---------HHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHH
Confidence 2333 34444445555444332 56789999999999999999999976
Q ss_pred ------cccccce--eccc----c-cccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI--TRPV----T-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI--LsTI----~-~aDrIlVLd~GrIV 677 (677)
..+|+++ .+++ + -|||++++.+|++|
T Consensus 174 dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv 212 (245)
T COG4555 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred HHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE
Confidence 1235553 2222 2 49999999999985
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=240.35 Aligned_cols=137 Identities=37% Similarity=0.458 Sum_probs=114.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------------- 63 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------------- 63 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------------
Confidence 4789999999754 46999999999999999999999999999999999999999999998752
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
++++|++|++.++++|++||+.+.
T Consensus 64 -----------------------------------------------------~~i~~~~q~~~~~~~tv~~nl~~~--- 87 (166)
T cd03223 64 -----------------------------------------------------EDLLFLPQRPYLPLGTLREQLIYP--- 87 (166)
T ss_pred -----------------------------------------------------ceEEEECCCCccccccHHHHhhcc---
Confidence 357888888888889999999742
Q ss_pred ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc---------------------ccc
Q psy845 597 HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK---------------------KSG 655 (677)
Q Consensus 597 sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~---------------------~~~ 655 (677)
...+||||||||++||||++++|+++. ..+
T Consensus 88 -----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 138 (166)
T cd03223 88 -----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG 138 (166)
T ss_pred -----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhC
Confidence 246899999999999999999999761 113
Q ss_pred cce------ecccccccEEEEEeCCe
Q psy845 656 VNI------TRPVTSCDKVLVMDNGQ 675 (677)
Q Consensus 656 ~TI------LsTI~~aDrIlVLd~Gr 675 (677)
+|+ .+....||+|++|++|-
T Consensus 139 ~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 139 ITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 452 22345699999999874
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=245.63 Aligned_cols=143 Identities=22% Similarity=0.293 Sum_probs=118.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+++..
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 69 (207)
T PRK13539 3 LEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP----------- 69 (207)
T ss_pred EEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch-----------
Confidence 7899999999753 599999999999999999999999999999999999999999999999875321
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
..|++++|++|++.++ +.|++||+.+..
T Consensus 70 --------------------------------------------------~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~ 99 (207)
T PRK13539 70 --------------------------------------------------DVAEACHYLGHRNAMKPALTVAENLEFWAA 99 (207)
T ss_pred --------------------------------------------------hhHhhcEEecCCCcCCCCCcHHHHHHHHHH
Confidence 1577888888877665 689999986422
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
...++++.++++..++.++... ...+||||||||++||||++++|+++
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~ll 149 (207)
T PRK13539 100 FLGGEELDIAAALEAVGLAPLAHL---------PFGYLSAGQKRRVALARLLVSNRPIW 149 (207)
T ss_pred hcCCcHHHHHHHHHHcCCHHHHcC---------ChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 2335567888888888654321 34589999999999999999999876
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-29 Score=245.66 Aligned_cols=145 Identities=23% Similarity=0.308 Sum_probs=121.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ----------- 67 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc-----------
Confidence 4689999999753 699999999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+ ...|++++|++|++.+|. .|++||+....
T Consensus 68 -----------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (198)
T TIGR01189 68 -----------------------------------------------R-DEPHRNILYLGHLPGLKPELSALENLHFWAA 99 (198)
T ss_pred -----------------------------------------------h-HHhhhheEEeccCcccccCCcHHHHHHHHHH
Confidence 2 245678899999888875 79999996432
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
...++++.++++..++.++... ...+||||||||++||||++++|+++
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~ll 149 (198)
T TIGR01189 100 IHGGAQRTIEDALAAVGLTGFEDL---------PAAQLSAGQQRRLALARLWLSRAPLW 149 (198)
T ss_pred HcCCcHHHHHHHHHHcCCHHHhcC---------ChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 1123457788888888765432 34689999999999999999999977
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=246.16 Aligned_cols=144 Identities=26% Similarity=0.271 Sum_probs=115.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---------- 78 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---------- 78 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----------
Confidence 48999999999753 599999999999999999999999999999999999999999999999887432
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
..+++++|++|++.++.+ |++||+.+..
T Consensus 79 ---------------------------------------------------~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 107 (214)
T PRK13543 79 ---------------------------------------------------DRSRFMAYLGHLPGLKADLSTLENLHFLC 107 (214)
T ss_pred ---------------------------------------------------hhhhceEEeecCcccccCCcHHHHHHHHH
Confidence 224568888888888865 9999985421
Q ss_pred ---CC-ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 ---RC-HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 ---~~-sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.. .++...++++..++.+. +++ ...+||||||||++||||++++|+++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~-------~~~--~~~~LS~G~~qrv~laral~~~p~ll 159 (214)
T PRK13543 108 GLHGRRAKQMPGSALAIVGLAGY-------EDT--LVRQLSAGQKKRLALARLWLSPAPLW 159 (214)
T ss_pred HhcCCcHHHHHHHHHHHcCChhh-------ccC--ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 11 22344556666655332 333 34689999999999999999999976
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=286.98 Aligned_cols=131 Identities=24% Similarity=0.306 Sum_probs=95.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--ccc-ccchhhcccc-CCCCChHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLF-NGTIRYNLDP-FGRCHDTEL 601 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LF-sgTIrENI~~-~~~~sdeeI 601 (677)
+.+|.||||||||+++|+|+.+|++|+|.+++. .++||++|++ .+. +.|+.+|+.. .....++++
T Consensus 342 ~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 410 (638)
T PRK10636 342 GLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410 (638)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHH
Confidence 667889999999999999999999999999741 2699999985 344 3477777632 112234456
Q ss_pred HHHHHHccchh-hHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------cccccce
Q psy845 602 WDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------KKSGVNI 658 (677)
Q Consensus 602 ~~Al~~a~l~e-fI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------~~~~~TI 658 (677)
.++++..++.+ .. +. ...+||||||||++||||++++|+++ ... .||
T Consensus 411 ~~~L~~~~l~~~~~-------~~--~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~-gtv 480 (638)
T PRK10636 411 RDYLGGFGFQGDKV-------TE--ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFE-GAL 480 (638)
T ss_pred HHHHHHcCCChhHh-------cC--chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC-CeE
Confidence 66666666532 21 11 45789999999999999999999977 122 252
Q ss_pred ---ecc---c-ccccEEEEEeCCeeC
Q psy845 659 ---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 ---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.|. + +-||||++|++|+++
T Consensus 481 i~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 481 VVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 222 2 249999999999973
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=245.24 Aligned_cols=148 Identities=24% Similarity=0.326 Sum_probs=118.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+ ++|++|+|.+||+++.+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~--------- 69 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDL--------- 69 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcC---------
Confidence 468999999974 3699999999999999999999999999999999999 589999999999998776
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
+... .|++++|+||++.+|.+ |+++|+
T Consensus 70 -------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~~~~~~l-- 98 (200)
T cd03217 70 -------------------------------------------------PPEERARLGIFLAFQYPPEIPGVKNADFL-- 98 (200)
T ss_pred -------------------------------------------------CHHHHhhCcEEEeecChhhccCccHHHHH--
Confidence 2222 34568888888888765 344443
Q ss_pred CCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 593 FGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 593 ~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
.. ...+||||||||++||||++++|+++
T Consensus 99 ----------------------~~---------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L 147 (200)
T cd03217 99 ----------------------RY---------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI 147 (200)
T ss_pred ----------------------hh---------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 00 12489999999999999999999976
Q ss_pred ---cccccce------ecccc--cccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI------TRPVT--SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI------LsTI~--~aDrIlVLd~GrIV 677 (677)
..+++|| ...+. .||+|++|++|+++
T Consensus 148 ~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 184 (200)
T cd03217 148 NKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIV 184 (200)
T ss_pred HHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEE
Confidence 1135663 23344 59999999999973
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-30 Score=252.07 Aligned_cols=175 Identities=28% Similarity=0.436 Sum_probs=136.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+.+..+|+..+|+.+ +|++|+||++++||.||+.||+||||||...++.|+..|++|+|.+||.|++.++
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lP-------- 72 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP-------- 72 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCC--------
Confidence 357889999999865 6999999999999999999999999999999999999999999999999999983
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
-.+.-|-.|||.|||+.+| ..|++|||...
T Consensus 73 -------------------------------------------------m~~RArlGigYLpQE~SIFr~LtV~dNi~~v 103 (243)
T COG1137 73 -------------------------------------------------MHKRARLGIGYLPQEASIFRKLTVEDNIMAV 103 (243)
T ss_pred -------------------------------------------------hHHHhhcCcccccccchHhhcCcHHHHHHHH
Confidence 2335577899999999999 56999999532
Q ss_pred CCCCh---------HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 594 GRCHD---------TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 594 ~~~sd---------eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
-+..+ +++.+.+++-++.+.-.+ .|..||||||.|+-|||||..||+.+
T Consensus 104 lE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~---------~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 104 LEIREKDLKKAERKEELDALLEEFHITHLRDS---------KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred HhhhhcchhHHHHHHHHHHHHHHhchHHHhcC---------cccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchh
Confidence 11111 123334444443322111 68999999999999999999999854
Q ss_pred ---------cccccc----e-----ecccccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVN----I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~T----I-----LsTI~~aDrIlVLd~GrIV 677 (677)
.++++- | -.|+.-|||.+++.+|++.
T Consensus 175 V~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl 218 (243)
T COG1137 175 VIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL 218 (243)
T ss_pred HHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE
Confidence 112222 2 2456679999999999974
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-28 Score=281.76 Aligned_cols=178 Identities=29% Similarity=0.382 Sum_probs=135.7
Q ss_pred cEEEEeeeEEeCCC---------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc
Q psy845 436 TIKFKNVSLRYRDN---------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 506 (677)
Q Consensus 436 ~I~fknVsFsY~~~---------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~ 506 (677)
-++++|++++|+.+ ...+++|+||+|++||++|||||||||||||+++|+|+.+|++|+|.++|.++.+.+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 48999999999631 135999999999999999999999999999999999999999999999999987651
Q ss_pred HHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--ccc-c
Q psy845 507 LETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLF-N 583 (677)
Q Consensus 507 ~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LF-s 583 (677)
.. ....+|++++||+|++ .++ .
T Consensus 393 ~~-------------------------------------------------------~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 393 PG-------------------------------------------------------KLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred HH-------------------------------------------------------HHHHhcCCeEEEecCchhhcCCC
Confidence 10 2335677889999987 365 4
Q ss_pred cchhhccccC----CCCC----hHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 584 GTIRYNLDPF----GRCH----DTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 584 gTIrENI~~~----~~~s----deeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
.|++||+... +... ++++.++++..++. +...+ ...+||||||||++|||||+.+|+++
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~---------~~~~LSgGqrQRv~iAraL~~~p~llllD 488 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR---------YPHEFSGGQRQRICIARALALNPKVIIAD 488 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999998531 1111 23456667777764 22222 45799999999999999999999976
Q ss_pred ---------------------ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------------------KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------------~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ +.|| .|. + ..||||+||++|+++
T Consensus 489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5563 332 3 349999999999984
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-28 Score=250.30 Aligned_cols=166 Identities=24% Similarity=0.324 Sum_probs=127.1
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++||+++ .+|+|+||++++||++||+||||||||||+++|+|+++ .+|+|.+||.++.+.
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~------------ 62 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAW------------ 62 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcC------------
Confidence 46778774 28999999999999999999999999999999999985 599999999998776
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCCC-
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFGR- 595 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~~- 595 (677)
+.+.+|+.++|+||++.+ ++.|++||+.++..
T Consensus 63 ----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~ 96 (248)
T PRK03695 63 ----------------------------------------------SAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD 96 (248)
T ss_pred ----------------------------------------------CHHHHhhheEEecccCccCCCccHHHHHHhcCcc
Confidence 555677788999998754 47899999975421
Q ss_pred -CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhc-------cchhh------------
Q psy845 596 -CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLR-------KTKKK------------ 651 (677)
Q Consensus 596 -~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr-------~p~IL------------ 651 (677)
.+ ++++.++++..++.+... . ....||||||||++||||+++ +|+++
T Consensus 97 ~~~~~~~~~~~~~~l~~~~l~~~~~-------~--~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~ 167 (248)
T PRK03695 97 KTRTEAVASALNEVAEALGLDDKLG-------R--SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA 167 (248)
T ss_pred CCCcHHHHHHHHHHHHHcCCHhHhc-------C--CcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHH
Confidence 11 234556666666644322 2 467999999999999999997 55755
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||+|++|++|+++
T Consensus 168 ~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (248)
T PRK03695 168 QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212 (248)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 232 2 359999999999974
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=250.51 Aligned_cols=159 Identities=26% Similarity=0.384 Sum_probs=118.6
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~------------------------- 88 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR------------------------- 88 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-------------------------
Confidence 4699999999999999999999999999999999999999999999999875332
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccc-cccccc-ccchhhccccCC---CCChHH----H
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP-QDPVLF-NGTIRYNLDPFG---RCHDTE----L 601 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~-Qd~~LF-sgTIrENI~~~~---~~sdee----I 601 (677)
...+|++++|++ |++.+| +.|++||+.... ..+.++ +
T Consensus 89 ----------------------------------~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 134 (236)
T cd03267 89 ----------------------------------RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL 134 (236)
T ss_pred ----------------------------------chhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 234567888886 556665 579999985321 122222 3
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------c--c-ccc
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------K--K-SGV 656 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------~--~-~~~ 656 (677)
.++++..++.+ ..|+ ...+||||||||++||||++++|+++ . . .++
T Consensus 135 ~~~l~~~gl~~-------~~~~--~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 205 (236)
T cd03267 135 DELSELLDLEE-------LLDT--PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGT 205 (236)
T ss_pred HHHHHHcCChh-------HhcC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 33444444432 2333 35689999999999999999999976 1 1 245
Q ss_pred ce---ec---ccc-cccEEEEEeCCeeC
Q psy845 657 NI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 657 TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
|| .| .+. .||+|++|++|+++
T Consensus 206 tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 206 TVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred EEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 63 22 233 38999999999974
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=235.24 Aligned_cols=129 Identities=29% Similarity=0.522 Sum_probs=110.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~----------- 67 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA----------- 67 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH-HHHhhhcccccccccccccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFNGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~ 595 (677)
+. +..|++++|++|
T Consensus 68 -----------------------------------------------~~~~~~~~~i~~~~q------------------ 82 (163)
T cd03216 68 -----------------------------------------------SPRDARRAGIAMVYQ------------------ 82 (163)
T ss_pred -----------------------------------------------CHHHHHhcCeEEEEe------------------
Confidence 32 346778999988
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------ 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------ 651 (677)
||||||||++||||++++|+++
T Consensus 83 ----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 128 (163)
T cd03216 83 ----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL 128 (163)
T ss_pred ----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999976
Q ss_pred cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..++.|+ .|. +. .|||+++|++|+++
T Consensus 129 ~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 129 RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1235563 222 32 49999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-28 Score=281.15 Aligned_cols=178 Identities=26% Similarity=0.370 Sum_probs=137.7
Q ss_pred cEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-++++|++++|+++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+..
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~----- 78 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDAD----- 78 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHH-----
Confidence 48999999999743 24699999999999999999999999999999999999999999999999998876111
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhcccccccccccc-cchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
+..++ |+.++|++|++.+|+ .|+.||+.
T Consensus 79 --------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 108 (648)
T PRK10535 79 --------------------------------------------------ALAQLRREHFGFIFQRYHLLSHLTAAQNVE 108 (648)
T ss_pred --------------------------------------------------HHHHHHhccEEEEeCCcccCCCCCHHHHHH
Confidence 11223 578999999999985 59999996
Q ss_pred cCC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PFG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+.. ..+ +++..+.++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~---------~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s 179 (648)
T PRK10535 109 VPAVYAGLERKQRLLRAQELLQRLGLEDRVEY---------QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 (648)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 421 111 2234555556655544332 45689999999999999999999976
Q ss_pred -----------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|+ ...++.|||+++|++|+++
T Consensus 180 ~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~ 222 (648)
T PRK10535 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222 (648)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEE
Confidence 1235663 2345579999999999974
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-28 Score=249.73 Aligned_cols=139 Identities=28% Similarity=0.385 Sum_probs=110.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++| +.+++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 48899999999753 599999999999999999999999999999999999999999999876 12355
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR 595 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~ 595 (677)
|+||++.++.. +..|+++|+.....
T Consensus 71 ~v~q~~~~~~~-------------------------------------------------------l~~~~~~~~~~~~~ 95 (251)
T PRK09544 71 YVPQKLYLDTT-------------------------------------------------------LPLTVNRFLRLRPG 95 (251)
T ss_pred Eeccccccccc-------------------------------------------------------cChhHHHHHhcccc
Confidence 55555433220 01366777643333
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.+++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 96 ~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 96 TKKEDILPALKRVQAGHLIDA---------PMQKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred ccHHHHHHHHHHcCChHHHhC---------ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 456778889999998766543 35689999999999999999999976
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-28 Score=246.71 Aligned_cols=152 Identities=28% Similarity=0.325 Sum_probs=117.8
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGA 533 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~ 533 (677)
|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------------------------- 52 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP---------------------------- 52 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC----------------------------
Confidence 5899999999999999999999999999999999999999999999987654
Q ss_pred CCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC-----CCCChH----HHHH
Q psy845 534 GKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF-----GRCHDT----ELWD 603 (677)
Q Consensus 534 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~-----~~~sde----eI~~ 603 (677)
+. ..+|++|++.+|. .|++||+.+. ...+++ ++.+
T Consensus 53 ------------------------------~~-----~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 97 (230)
T TIGR01184 53 ------------------------------GP-----DRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEE 97 (230)
T ss_pred ------------------------------Ch-----hheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 21 1378899988886 6999998642 122222 3455
Q ss_pred HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cc-cccce
Q psy845 604 ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KK-SGVNI 658 (677)
Q Consensus 604 Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~-~~~TI 658 (677)
+++..++.+...+ ...+||||||||++||||++++|+++ .. .++||
T Consensus 98 ~l~~~~l~~~~~~---------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~ti 168 (230)
T TIGR01184 98 HIALVGLTEAADK---------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168 (230)
T ss_pred HHHHcCCHHHHcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 6666666543322 35689999999999999999999976 11 25663
Q ss_pred ---ecc---c-ccccEEEEEeCCeeC
Q psy845 659 ---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 ---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.|. + +.||+|++|++|+++
T Consensus 169 i~~sH~~~~~~~~~d~v~~l~~G~i~ 194 (230)
T TIGR01184 169 LMVTHDVDEALLLSDRVVMLTNGPAA 194 (230)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCcEe
Confidence 222 2 349999999999984
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-28 Score=282.37 Aligned_cols=104 Identities=23% Similarity=0.257 Sum_probs=82.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-CC-ChHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG-RC-HDTELW 602 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~-~~-sdeeI~ 602 (677)
+.+|.||||||||+++|.|+.+|++|+|.++ .+++|+||++.++ +.|++||+.... .. .++...
T Consensus 369 ~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 435 (590)
T PRK13409 369 GIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS 435 (590)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHH
Confidence 4558899999999999999999999999875 1599999998764 779999997532 12 233456
Q ss_pred HHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 603 DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 603 ~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 436 ~~L~~l~l~~~~~~---------~~~~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 436 EIIKPLQLERLLDK---------NVKDLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred HHHHHCCCHHHHhC---------CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 67777777544322 45789999999999999999999976
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-28 Score=243.76 Aligned_cols=152 Identities=22% Similarity=0.269 Sum_probs=114.1
Q ss_pred EEEEeeeEEeCC----C-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC--E--ecccccH
Q psy845 437 IKFKNVSLRYRD----N-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD--F--DIASVEL 507 (677)
Q Consensus 437 I~fknVsFsY~~----~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG--~--dI~~l~~ 507 (677)
++++|++++|++ + .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+|| . ++.+.+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 689999999963 1 24699999999999999999999999999999999999999999999984 2 4433310
Q ss_pred HHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhcccccccccccc-cc
Q psy845 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFN-GT 585 (677)
Q Consensus 508 ~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFs-gT 585 (677)
. +..++ ++.++|++|++.++. .|
T Consensus 82 ~-------------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~t 106 (224)
T TIGR02324 82 R-------------------------------------------------------EVLEVRRKTIGYVSQFLRVIPRVS 106 (224)
T ss_pred H-------------------------------------------------------HHHHHHhcceEEEecccccCCCcc
Confidence 0 12233 457999999988875 58
Q ss_pred hhhccccC---CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 586 IRYNLDPF---GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 586 IrENI~~~---~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
++||+... .... ++++.++++..++.+... +. .+.+||||||||++||||++++|+++
T Consensus 107 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~--~~~~LS~G~~qrl~laral~~~p~ll 171 (224)
T TIGR02324 107 ALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HL--PPATFSGGEQQRVNIARGFIADYPIL 171 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hC--CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998531 1122 234455666666543221 11 46799999999999999999999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-28 Score=238.71 Aligned_cols=141 Identities=20% Similarity=0.267 Sum_probs=115.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +.++ ++||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----------- 67 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI----------- 67 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh-----------
Confidence 689999999964 3344 59999999999999999999999999999999999999999999887543
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~~ 595 (677)
+ ++.++|++|++.+ ++.|++||+.+...
T Consensus 68 -----------------------------------------------~----~~~~~~~~~~~~~~~~~tv~~~l~~~~~ 96 (195)
T PRK13541 68 -----------------------------------------------A----KPYCTYIGHNLGLKLEMTVFENLKFWSE 96 (195)
T ss_pred -----------------------------------------------h----hhhEEeccCCcCCCccCCHHHHHHHHHH
Confidence 1 2357888887644 67899999965321
Q ss_pred --CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 596 --CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 596 --~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..++++.++++..++.+...+ .+.+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 97 IYNSAETLYAAIHYFKLHDLLDE---------KCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred hcccHHHHHHHHHHcCCHhhhcc---------ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 134567777888887654332 46799999999999999999999976
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-28 Score=237.66 Aligned_cols=138 Identities=27% Similarity=0.330 Sum_probs=111.6
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
+.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++..-+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~------------------------ 60 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR------------------------ 60 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccc------------------------
Confidence 36999999999999999999999999999999999999999999999999874210
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccCC---CCCh----HHH
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPFG---RCHD----TEL 601 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~~---~~sd----eeI 601 (677)
.+...+|+.++|++|++ .+|..|++||+.+.. ..++ +++
T Consensus 61 --------------------------------~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~ 108 (190)
T TIGR01166 61 --------------------------------KGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRV 108 (190)
T ss_pred --------------------------------cchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHH
Confidence 03456788899999998 578889999996421 1222 345
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcc
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKK 653 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~ 653 (677)
.++++..++.++..+ ...+||||||||++||||++++|+++.+
T Consensus 109 ~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 109 REALTAVGASGLRER---------PTHCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred HHHHHHcCchhhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 667777777654433 3468999999999999999999998843
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-28 Score=276.14 Aligned_cols=192 Identities=25% Similarity=0.386 Sum_probs=135.9
Q ss_pred ccEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 435 GTIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 435 g~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.-++++|++++|+++ ..++++|+||++++||++|||||||||||||+++|+|+++|++|+|.++|+++..-.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~------ 84 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS------ 84 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccc------
Confidence 358999999999642 236999999999999999999999999999999999999999999999998763210
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccc--cccc-cchhh
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDP--VLFN-GTIRY 588 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~--~LFs-gTIrE 588 (677)
++ + +.+.+. .......+| ++||||+|+| .++. .|++|
T Consensus 85 ------~~--~-----------------------------~~~~~~--~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e 125 (623)
T PRK10261 85 ------RQ--V-----------------------------IELSEQ--SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGE 125 (623)
T ss_pred ------cc--c-----------------------------cccccC--CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHH
Confidence 00 0 000000 000223444 5799999998 5665 69999
Q ss_pred ccccC----CCCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 589 NLDPF----GRCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 589 NI~~~----~~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
|+... ...+. +++.++++..|+.+.-. -.+. ...+||||||||++|||||+.+|+++
T Consensus 126 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----~~~~--~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~L 199 (623)
T PRK10261 126 QIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQT----ILSR--YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTAL 199 (623)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhh----HHhC--CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 99642 11222 34566677776642100 0111 45799999999999999999999976
Q ss_pred ---------------ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------------KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. + +-||||+||++|+++
T Consensus 200 D~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 200 DVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 112 5663 332 2 349999999999985
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-28 Score=222.55 Aligned_cols=130 Identities=45% Similarity=0.628 Sum_probs=114.1
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGA 533 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~ 533 (677)
|+|+|+++++||+++|+||||||||||+++|+|.++|++|+|.+||.++.+.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~---------------------------- 52 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI---------------------------- 52 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS----------------------------
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc----------------------------
Confidence 7899999999999999999999999999999999999999999999999886
Q ss_pred CCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccc-hhhccccCCCCChHHHHHHHHHccchh
Q psy845 534 GKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT-IRYNLDPFGRCHDTELWDALEKSHLKS 612 (677)
Q Consensus 534 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgT-IrENI~~~~~~sdeeI~~Al~~a~l~e 612 (677)
+....|+.+++++|++.+|++. ++|| ..++++.++++..++.+
T Consensus 53 ------------------------------~~~~~~~~i~~~~~~~~~~~~~tv~~~------~~~~~~~~~l~~l~~~~ 96 (137)
T PF00005_consen 53 ------------------------------DIEELRRRIGYVPQDPQLFPGLTVREN------ESDERIEEVLKKLGLED 96 (137)
T ss_dssp ------------------------------HHHHHHHTEEEEESSHCHHTTSBHHHH------HHHHHHHHHHHHTTHGG
T ss_pred ------------------------------ccccccccccccccccccccccccccc------ccccccccccccccccc
Confidence 7788899999999999998764 9999 34677888888888766
Q ss_pred hHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhhccc
Q psy845 613 KVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKKKKS 654 (677)
Q Consensus 613 fI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL~~~ 654 (677)
+ .++.+ ++.+||||||||++||||++++|+++...
T Consensus 97 ~-------~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllD 133 (137)
T PF00005_consen 97 L-------LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLD 133 (137)
T ss_dssp G-------TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred c-------cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3 23333 56899999999999999999999987544
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-28 Score=246.42 Aligned_cols=173 Identities=25% Similarity=0.351 Sum_probs=133.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++.+|++.+|++- .+++|+||++++||++||+|||||||||++|++.|+|+|++|+|.++|.||+.++
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~---------- 72 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP---------- 72 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCC----------
Confidence 5788999999764 5999999999999999999999999999999999999999999999999999984
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~ 595 (677)
+.+--|..|+--+|.+.+| +.|+-||+..+..
T Consensus 73 -----------------------------------------------p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~ 105 (250)
T COG0411 73 -----------------------------------------------PHRIARLGIARTFQITRLFPGLTVLENVAVGAH 105 (250)
T ss_pred -----------------------------------------------HHHHHhccceeecccccccCCCcHHHHHHHHhh
Confidence 3334456666677777777 4589999853210
Q ss_pred -------------C--Ch----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc----
Q psy845 596 -------------C--HD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK---- 652 (677)
Q Consensus 596 -------------~--sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~---- 652 (677)
. .+ |+-.+.++.+++.+...+ ...+||+||+.|+-|||||..+|+++.
T Consensus 106 ~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~---------~A~~LsyG~qR~LEIArALa~~P~lLLLDEP 176 (250)
T COG0411 106 ARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR---------PAGNLSYGQQRRLEIARALATQPKLLLLDEP 176 (250)
T ss_pred hhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc---------hhhcCChhHhHHHHHHHHHhcCCCEEEecCc
Confidence 1 12 223445556666554322 467999999999999999999999771
Q ss_pred -------------------c--cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 653 -------------------K--SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 653 -------------------~--~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
. .+.|| -| -++ -||||+||+.|+++
T Consensus 177 aAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 177 AAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 1 23553 22 233 39999999999975
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-25 Score=244.77 Aligned_cols=375 Identities=20% Similarity=0.187 Sum_probs=234.4
Q ss_pred ccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q psy845 207 ALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITT-LYHLISKVFRIAVRELKRMENVS 285 (677)
Q Consensus 207 ~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i~~-l~~~i~~~~~~~~~~~~r~~~~~ 285 (677)
|+|..|+|.|++...+-..+.+ ..++...+.++....-++...+|...+.+..-. +...+.+.+++..-+..-+++..
T Consensus 182 dNPDQrltqDv~kf~~~l~sl~-s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qekl 260 (659)
T KOG0060|consen 182 DNPDQRLTQDVEKFCRQLSSLY-SNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKL 260 (659)
T ss_pred CChHHHHhHHHHHHHHHHHHHH-HhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHh
Confidence 4678999999988776555433 335555555555554555555554433332222 23334444444443333334444
Q ss_pred cccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---
Q psy845 286 RSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLT----VA--- 358 (677)
Q Consensus 286 ~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~----lv--- 358 (677)
.++..-.-.+...+.+.|--|+.++.+.++.+...+...+.....-....|+....+++.- ..-+.++. -+
T Consensus 261 EGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Y--lg~ilsy~vi~~p~Fs~ 338 (659)
T KOG0060|consen 261 EGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDY--LGGILSYVVIAIPFFSG 338 (659)
T ss_pred hcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhheeeEEeeeeecc
Confidence 4555555556667888888899888877777666666554443333333344443333332 11111111 11
Q ss_pred -HhcCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCCCCC-----CCCc----c
Q psy845 359 -FHGSVSPALAGLALTYAS----HVTGLLQFTVRVFVETELNFLAVERINNCSKK---LVPEGRGP-----ITSE----F 421 (677)
Q Consensus 359 -~~G~ls~g~l~~~l~~~~----~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~---~~~e~~~~-----~~~~----~ 421 (677)
..+.++++.+...+.... .+.+.+..++....++..-..-..||.|+.+. ......+. ..++ .
T Consensus 339 h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l 418 (659)
T KOG0060|consen 339 HVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGL 418 (659)
T ss_pred cccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhcc
Confidence 234677776655444332 33344444444444555555667888877531 11100000 0000 0
Q ss_pred ccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 422 GQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 422 ~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
+.....+..+|.+..|+|++|++.=|++.+...+|+||+|+.|+.+-|.||||||||+|++.+.|+|+-.+|++.--..
T Consensus 419 ~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~- 497 (659)
T KOG0060|consen 419 SLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD- 497 (659)
T ss_pred CCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc-
Confidence 0000012233445689999999999886555678899999999999999999999999999999999999998864211
Q ss_pred cccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc
Q psy845 502 IASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 581 (677)
Q Consensus 502 I~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L 581 (677)
|. + +.+-|+||.|+.
T Consensus 498 -------------------------------------------------~~-----------~-----~~lfflPQrPYm 512 (659)
T KOG0060|consen 498 -------------------------------------------------GG-----------P-----KDLFFLPQRPYM 512 (659)
T ss_pred -------------------------------------------------CC-----------C-----CceEEecCCCCc
Confidence 00 1 345678888888
Q ss_pred cccchhhccccC--------CCCChHHHHHHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchh
Q psy845 582 FNGTIRYNLDPF--------GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKK 650 (677)
Q Consensus 582 FsgTIrENI~~~--------~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~I 650 (677)
-.||+||-+-+- +.++|++|.+.++.+++.+.++. .+|+|+.+ -...||+||+||+|.||-++.+|+.
T Consensus 513 t~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~ 591 (659)
T KOG0060|consen 513 TLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKF 591 (659)
T ss_pred cccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCce
Confidence 888888887421 24789999999999999886655 58999877 4789999999999999999999996
Q ss_pred h
Q psy845 651 K 651 (677)
Q Consensus 651 L 651 (677)
-
T Consensus 592 A 592 (659)
T KOG0060|consen 592 A 592 (659)
T ss_pred E
Confidence 5
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-27 Score=231.17 Aligned_cols=178 Identities=26% Similarity=0.346 Sum_probs=134.5
Q ss_pred cEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-|+.++++..-++. +-.+|++|++.|++||.+|||||||||||||+-+++|+-+|++|+|.+.|+++.+++.+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd----- 80 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED----- 80 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH-----
Confidence 47788888877654 34689999999999999999999999999999999999999999999999999888422
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhccccccccccc-ccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LF-sgTIrENI~ 591 (677)
....+| +++|+|+|...|. +.|--||..
T Consensus 81 --------------------------------------------------~rA~~R~~~vGfVFQSF~Lip~ltAlENV~ 110 (228)
T COG4181 81 --------------------------------------------------ARAALRARHVGFVFQSFHLIPNLTALENVA 110 (228)
T ss_pred --------------------------------------------------HHHHhhccceeEEEEeeeccccchhhhhcc
Confidence 333443 4777777777775 778899985
Q ss_pred c----CCCCChHH---HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc------------
Q psy845 592 P----FGRCHDTE---LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------ 652 (677)
Q Consensus 592 ~----~~~~sdee---I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------ 652 (677)
. -++.+.+. -.+.++.+|+.+-+.. ...+|||||+||+|||||+.-.|+++.
T Consensus 111 lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H---------yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~T 181 (228)
T COG4181 111 LPLELRGESSADSRAGAKALLEAVGLGKRLTH---------YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181 (228)
T ss_pred chhhhcCCccccHHHHHHHHHHHhCccccccc---------CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhH
Confidence 2 12222222 3444556655443322 467999999999999999999999881
Q ss_pred -------------ccccc-e--ec---ccccccEEEEEeCCeeC
Q psy845 653 -------------KSGVN-I--TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 -------------~~~~T-I--Ls---TI~~aDrIlVLd~GrIV 677 (677)
-.|.| | +| ....|||++-|++|+++
T Consensus 182 g~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 182 GDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLV 225 (228)
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceec
Confidence 12334 2 22 24579999999999985
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-27 Score=245.63 Aligned_cols=146 Identities=29% Similarity=0.388 Sum_probs=118.4
Q ss_pred cEEEEeeeEEeCCCC-------CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHH
Q psy845 436 TIKFKNVSLRYRDNW-------PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 508 (677)
Q Consensus 436 ~I~fknVsFsY~~~~-------~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~ 508 (677)
-++++|++..|+... ..+++||||+|++||++||||+|||||||+.++++|+++|++|+|.++|.|+..+
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~--- 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL--- 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc---
Confidence 378899999996432 3689999999999999999999999999999999999999999999999998777
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
+
T Consensus 81 -------------------------------------------------------~------------------------ 81 (268)
T COG4608 81 -------------------------------------------------------S------------------------ 81 (268)
T ss_pred -------------------------------------------------------c------------------------
Confidence 1
Q ss_pred ccccCCCCChHHHHHHHHHccchh-hHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc---------------
Q psy845 589 NLDPFGRCHDTELWDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK--------------- 652 (677)
Q Consensus 589 NI~~~~~~sdeeI~~Al~~a~l~e-fI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~--------------- 652 (677)
+...++++.+.++.+|+.+ +..+ ...+||||||||++|||||.-||+++.
T Consensus 82 -----~~~~~~~v~elL~~Vgl~~~~~~r---------yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaq 147 (268)
T COG4608 82 -----KEERRERVLELLEKVGLPEEFLYR---------YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147 (268)
T ss_pred -----hhHHHHHHHHHHHHhCCCHHHhhc---------CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHH
Confidence 1123466888999998765 3322 457999999999999999999998651
Q ss_pred ----------ccccc---e---eccccc-ccEEEEEeCCeeC
Q psy845 653 ----------KSGVN---I---TRPVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----------~~~~T---I---LsTI~~-aDrIlVLd~GrIV 677 (677)
..+.| | ++.+++ ||||.||..|+||
T Consensus 148 IlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iV 189 (268)
T COG4608 148 ILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIV 189 (268)
T ss_pred HHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCcee
Confidence 12333 3 344444 8999999999986
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-27 Score=295.37 Aligned_cols=175 Identities=23% Similarity=0.329 Sum_probs=140.4
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|+++|++++|+++++.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.|++.
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~---------- 996 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET---------- 996 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc----------
Confidence 4699999999996433569999999999999999999999999999999999999999999999998753
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+.+..|+++|++||++.+|+ .|++||+.+.
T Consensus 997 -------------------------------------------------~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~ 1027 (2272)
T TIGR01257 997 -------------------------------------------------NLDAVRQSLGMCPQHNILFHHLTVAEHILFY 1027 (2272)
T ss_pred -------------------------------------------------hHHHHhhcEEEEecCCcCCCCCCHHHHHHHH
Confidence 34467888999999998885 6999999653
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.+.++..++.+...+ ...+||||||||++||||++.+|+++
T Consensus 1028 ~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~---------~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~ 1098 (2272)
T TIGR01257 1028 AQLKGRSWEEAQLEMEAMLEDTGLHHKRNE---------EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098 (2272)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 2 122 2346667777776544322 46799999999999999999999976
Q ss_pred --------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+|+|| .|.. .-||||++|++|+++
T Consensus 1099 ~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~ 1139 (2272)
T TIGR01257 1099 SIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLY 1139 (2272)
T ss_pred HHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1246673 3332 249999999999974
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-27 Score=240.30 Aligned_cols=159 Identities=28% Similarity=0.380 Sum_probs=115.9
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC----CccEEEECCEecccccHHHhhhhcccccCCcccccccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL----SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p----~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~ 528 (677)
+++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~----------------------- 57 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL----------------------- 57 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-----------------------
Confidence 58999999999999999999999999999999999999 899999999987543
Q ss_pred ccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc-ccc--cchhhcccc----CCCC---Ch
Q psy845 529 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LFN--GTIRYNLDP----FGRC---HD 598 (677)
Q Consensus 529 ~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~-LFs--gTIrENI~~----~~~~---sd 598 (677)
+..+++++|++|++. .|. .|++||+.. .+.. .+
T Consensus 58 -------------------------------------~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 100 (230)
T TIGR02770 58 -------------------------------------SIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQAR 100 (230)
T ss_pred -------------------------------------hhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHH
Confidence 112346777777764 232 477777632 1111 13
Q ss_pred HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cc-
Q psy845 599 TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KK- 653 (677)
Q Consensus 599 eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~- 653 (677)
+++.++++..++.+. . +-.+. .+.+||||||||++||||++++|+++ ..
T Consensus 101 ~~~~~~l~~~~l~~~-~---~~~~~--~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~ 174 (230)
T TIGR02770 101 ALILEALEAVGLPDP-E---EVLKK--YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174 (230)
T ss_pred HHHHHHHHHcCCCch-H---HHHhC--ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh
Confidence 446777777777531 0 00111 46799999999999999999999976 11
Q ss_pred cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 654 SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 654 ~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.++|| .| .+ ..||||++|++|+++
T Consensus 175 ~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 205 (230)
T TIGR02770 175 FGTGILLITHDLGVVARIADEVAVMDDGRIV 205 (230)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 25663 22 23 349999999999974
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-27 Score=227.85 Aligned_cols=165 Identities=31% Similarity=0.431 Sum_probs=132.8
Q ss_pred eCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 446 YRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 446 Y~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
|...+.++|+|+||++++||.+||.||||||||||+|.++-+..|++|+++..|.|+..+
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~-------------------- 70 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL-------------------- 70 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc--------------------
Confidence 544445799999999999999999999999999999999999999999999999999888
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc-C---C-CCChHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP-F---G-RCHDTE 600 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~-~---~-~~sdee 600 (677)
+++.+|++++|+-|.|-||-+||+||+-+ . + +.+...
T Consensus 71 --------------------------------------~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~a 112 (223)
T COG4619 71 --------------------------------------KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAA 112 (223)
T ss_pred --------------------------------------ChHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHH
Confidence 88999999999999999999999999953 2 1 223333
Q ss_pred HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcccccc-----------------------
Q psy845 601 LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKKSGVN----------------------- 657 (677)
Q Consensus 601 I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~~~~T----------------------- 657 (677)
-.+.++.+++.+.+.+ . +..+||||||||+||+|-|---|+|+.+...|
T Consensus 113 a~~llar~~l~~~~L~------k--~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~ 184 (223)
T COG4619 113 ALDLLARFALPDSILT------K--NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 (223)
T ss_pred HHHHHHHcCCchhhhc------c--hhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence 4455666666554322 1 56899999999999999999999988322211
Q ss_pred -----eec----ccccccEEEEEeCCee
Q psy845 658 -----ITR----PVTSCDKVLVMDNGQA 676 (677)
Q Consensus 658 -----ILs----TI~~aDrIlVLd~GrI 676 (677)
|+| .+++|||++-+..|++
T Consensus 185 vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 185 VAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred eEEEEEecChHHHhhhhheEEEeccCcc
Confidence 122 3677999999998864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=268.52 Aligned_cols=158 Identities=23% Similarity=0.300 Sum_probs=122.1
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC--ccEEEECCEecccccHHHhhhhcccccCCcccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS--SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~--~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~ 528 (677)
+.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.+||+++.+
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~------------------------ 136 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK------------------------ 136 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch------------------------
Confidence 46999999999999999999999999999999999999885 8999999987521
Q ss_pred ccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC------CCChHH-
Q psy845 529 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG------RCHDTE- 600 (677)
Q Consensus 529 ~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~------~~sdee- 600 (677)
+.+++++||+|++.++. .|++||+.+.. +.+++|
T Consensus 137 --------------------------------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~ 178 (659)
T PLN03211 137 --------------------------------------QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEK 178 (659)
T ss_pred --------------------------------------hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHH
Confidence 23456889999988884 69999996421 223333
Q ss_pred ---HHHHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhh-----------------------
Q psy845 601 ---LWDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKK----------------------- 651 (677)
Q Consensus 601 ---I~~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL----------------------- 651 (677)
+.+.++..|+ ++..||.+ .+.+||||||||++||||++++|+++
T Consensus 179 ~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~ 251 (659)
T PLN03211 179 ILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGS 251 (659)
T ss_pred HHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 3334444443 33457766 35789999999999999999999976
Q ss_pred -cccccce---ecc-----cccccEEEEEeCCeeC
Q psy845 652 -KKSGVNI---TRP-----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~~~TI---LsT-----I~~aDrIlVLd~GrIV 677 (677)
..+|+|| .|. .+.||+|++|++|+++
T Consensus 252 l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 252 LAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred HHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 1257773 332 2448999999999974
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=273.93 Aligned_cols=160 Identities=26% Similarity=0.339 Sum_probs=125.0
Q ss_pred CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhhhcccccCCcccccc
Q psy845 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526 (677)
Q Consensus 450 ~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~ 526 (677)
++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||.+++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~----------------------- 93 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID----------------------- 93 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-----------------------
Confidence 457999999999999999999999999999999999999885 799999998763
Q ss_pred ccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC------CCChH
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG------RCHDT 599 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~------~~sde 599 (677)
.+++|+.++||+||+.++ +.|++|||.+.. +.+.+
T Consensus 94 --------------------------------------~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~ 135 (617)
T TIGR00955 94 --------------------------------------AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKK 135 (617)
T ss_pred --------------------------------------HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHH
Confidence 235688899999999988 569999996432 12222
Q ss_pred H----HHHHHHHccchhhHhhhhcccCCCCC----CCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 600 E----LWDALEKSHLKSKVVTMRSKLDSDVQ----GDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 600 e----I~~Al~~a~l~efI~~LP~GldT~v~----G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
+ +.++++..+ +++..||.++ +..||||||||++||||++++|+++
T Consensus 136 ~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~ 208 (617)
T TIGR00955 136 EKRERVDEVLQALG-------LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208 (617)
T ss_pred HHHHHHHHHHHHcC-------chhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHH
Confidence 2 333333333 3456788883 3689999999999999999999976
Q ss_pred ----cccccce---ecc-----cccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI---TRP-----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI---LsT-----I~~aDrIlVLd~GrIV 677 (677)
..+|+|+ .|. .+.||+|++|++|+++
T Consensus 209 L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v 246 (617)
T TIGR00955 209 LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA 246 (617)
T ss_pred HHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE
Confidence 1246773 222 3469999999999974
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-27 Score=236.89 Aligned_cols=161 Identities=25% Similarity=0.286 Sum_probs=117.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+.++|++.+|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++...
T Consensus 23 l~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------- 89 (224)
T cd03220 23 LGILGRKGEVGEF--WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL----------- 89 (224)
T ss_pred hhhhhhhhhcCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----------
Confidence 6788889999753 699999999999999999999999999999999999999999999999875321
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC--
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-- 594 (677)
. ...+ +..+.|++||+....
T Consensus 90 -----------------------------------------------~-----~~~~------~~~~~tv~enl~~~~~~ 111 (224)
T cd03220 90 -----------------------------------------------G-----LGGG------FNPELTGRENIYLNGRL 111 (224)
T ss_pred -----------------------------------------------c-----cccc------CCCCCcHHHHHHHHHHH
Confidence 0 0011 112568888885321
Q ss_pred -CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 595 -RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 595 -~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
..+.+ ++.++++..++.+. .++ ...+||||||||++||||++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~-------~~~--~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~ 182 (224)
T cd03220 112 LGLSRKEIDEKIDEIIEFSELGDF-------IDL--PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ 182 (224)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhh-------hhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11222 34445555554433 233 34689999999999999999999876
Q ss_pred ------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +.||+|++|++|+++
T Consensus 183 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 183 RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1234563 222 3 349999999999974
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=242.76 Aligned_cols=183 Identities=30% Similarity=0.407 Sum_probs=127.0
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-C----CccEEEECCEecccccHHH
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-L----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-p----~~G~I~IdG~dI~~l~~~~ 509 (677)
++++|++.+|+.+. ..+++||||++++||++||||+|||||||+.+.++|+.+ | .+|+|.++|.|+-+++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997542 469999999999999999999999999999999999998 3 5789999999998885443
Q ss_pred hh----hhcccccCCccc-cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc
Q psy845 510 LR----SRLSVIPQDPVL-FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 510 ~~----~~i~~v~q~~~l-f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg 584 (677)
.+ ++|++|||||.- +| +.....++
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLn--------------------------------------Pv~~Ig~Q------------- 110 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLN--------------------------------------PVMTIGDQ------------- 110 (316)
T ss_pred HHhhcCceEEEEEcCchhhcC--------------------------------------ChhhHHHH-------------
Confidence 22 255555555431 11 11111111
Q ss_pred chhhccccCCCC-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------
Q psy845 585 TIRYNLDPFGRC-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------- 652 (677)
Q Consensus 585 TIrENI~~~~~~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------- 652 (677)
+.|-+...... + .++..++++.+++.+--+.+ +. ...+||||||||+.||-|++.+|+++.
T Consensus 111 -i~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~----~~--YPhelSGGMrQRV~IAmala~~P~LlIADEPTTA 183 (316)
T COG0444 111 -IAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL----KS--YPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183 (316)
T ss_pred -HHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHH----hh--CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcch
Confidence 12222221111 1 23567788888887531111 11 467999999999999999999999761
Q ss_pred ------------------ccccc---eeccc----ccccEEEEEeCCeeC
Q psy845 653 ------------------KSGVN---ITRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------------~~~~T---ILsTI----~~aDrIlVLd~GrIV 677 (677)
..+.+ |+|.+ +-||||+||.+|+||
T Consensus 184 LDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 184 LDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 12333 24432 359999999999986
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=289.83 Aligned_cols=176 Identities=17% Similarity=0.226 Sum_probs=139.1
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
..-|+++|++++|+++...+++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~--------- 2005 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT--------- 2005 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc---------
Confidence 34699999999997533469999999999999999999999999999999999999999999999998753
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~ 592 (677)
+.++.|++|||+||++.+++ .|++||+.+
T Consensus 2006 --------------------------------------------------~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l 2035 (2272)
T TIGR01257 2006 --------------------------------------------------NISDVHQNMGYCPQFDAIDDLLTGREHLYL 2035 (2272)
T ss_pred --------------------------------------------------hHHHHhhhEEEEeccccCCCCCCHHHHHHH
Confidence 23356778888888888874 699999964
Q ss_pred CC---CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
.. ..+.+ .+.++++..++.++..+ ...+||||||||+++|||++.+|+++
T Consensus 2036 ~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk---------~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr 2106 (2272)
T TIGR01257 2036 YARLRGVPAEEIEKVANWSIQSLGLSLYADR---------LAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106 (2272)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHHHhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 21 12222 34456777777655332 35689999999999999999999976
Q ss_pred ----------cccccce---ecccc----cccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TRPVT----SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---LsTI~----~aDrIlVLd~GrIV 677 (677)
..+|+|| .|.+. -||||++|++|+++
T Consensus 2107 ~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~ 2149 (2272)
T TIGR01257 2107 RMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ 2149 (2272)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1246673 33332 39999999999974
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=229.31 Aligned_cols=172 Identities=27% Similarity=0.344 Sum_probs=135.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+.+|+|++-.++ .+|+|+|++++|||..||+||||||||||+|.|+|...|++|++.+||.++.++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~----------- 68 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSW----------- 68 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhC-----------
Confidence 6788999887654 599999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~- 594 (677)
+.+++-++-++.||+..| |.-|++|=+.++.
T Consensus 69 -----------------------------------------------~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~ 101 (259)
T COG4559 69 -----------------------------------------------PPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI 101 (259)
T ss_pred -----------------------------------------------CHHHHHHHhhhcccCcccccceEHHHHHHhccc
Confidence 666777777777887777 7889999885442
Q ss_pred ------CCChHH--HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch------hh---------
Q psy845 595 ------RCHDTE--LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK------KK--------- 651 (677)
Q Consensus 595 ------~~sdee--I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~------IL--------- 651 (677)
+..+++ ..+++..+++..+-.+ .-..|||||+||+.+||.|.+-.+ .+
T Consensus 102 p~~~g~~~~e~~~i~~~ala~~d~~~la~R---------~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL 172 (259)
T COG4559 102 PHRSGREPEEDERIAAQALAATDLSGLAGR---------DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL 172 (259)
T ss_pred ccccCCCchhhHHHHHHHHHHcChhhhhcc---------chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc
Confidence 222344 5668888888765433 235899999999999999976432 22
Q ss_pred ---------------cccccc---eecc----cccccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVN---ITRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~T---ILsT----I~~aDrIlVLd~GrIV 677 (677)
..++.. |+|. .+.||||++|.+||++
T Consensus 173 Di~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~ 220 (259)
T COG4559 173 DIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220 (259)
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe
Confidence 122322 3443 3569999999999985
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-26 Score=241.97 Aligned_cols=161 Identities=30% Similarity=0.366 Sum_probs=131.9
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCC
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTG 532 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~ 532 (677)
-++|+||+|+.||+..|.|-||||||||++++.|+++|+.|+|++||.|+..++..
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~------------------------ 98 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAA------------------------ 98 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHH------------------------
Confidence 37899999999999999999999999999999999999999999999999888433
Q ss_pred CCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccc-ccchhhccccCCC---CCh----HHHHH
Q psy845 533 AGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLF-NGTIRYNLDPFGR---CHD----TELWD 603 (677)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LF-sgTIrENI~~~~~---~sd----eeI~~ 603 (677)
++.++ |+++++|+|..-|+ +.|+.||..++-+ .+. +...+
T Consensus 99 -------------------------------~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~ 147 (386)
T COG4175 99 -------------------------------ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALE 147 (386)
T ss_pred -------------------------------HHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHH
Confidence 23333 45788888888888 6899999987632 233 33567
Q ss_pred HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------------------ccccce
Q psy845 604 ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK-------------------------KSGVNI 658 (677)
Q Consensus 604 Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~-------------------------~~~~TI 658 (677)
+++.+|+++|-.+.| .+||||++||+.|||||..||+|+. .-.+||
T Consensus 148 ~l~~VgL~~~~~~yp---------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTI 218 (386)
T COG4175 148 ALELVGLEGYADKYP---------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTI 218 (386)
T ss_pred HHHHcCchhhhhcCc---------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeE
Confidence 889999998876644 6899999999999999999999871 224563
Q ss_pred ---ecc----cccccEEEEEeCCeeC
Q psy845 659 ---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 ---LsT----I~~aDrIlVLd~GrIV 677 (677)
.|. ++-.|||..|++|+||
T Consensus 219 vFitHDLdEAlriG~rIaimkdG~iv 244 (386)
T COG4175 219 VFITHDLDEALRIGDRIAIMKDGEIV 244 (386)
T ss_pred EEEecCHHHHHhccceEEEecCCeEE
Confidence 443 4557999999999985
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-26 Score=252.69 Aligned_cols=174 Identities=24% Similarity=0.340 Sum_probs=136.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++.+|++- ++|+|+||++++||..|++|.||||||||+|.|+|.|+|++|+|.+||.+..-.+
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~s--------- 76 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSS--------- 76 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCC---------
Confidence 48899999999864 6999999999999999999999999999999999999999999999999876541
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+.+..+..|++|.||..|+ +.||.|||-+++
T Consensus 77 ------------------------------------------------p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgr 108 (500)
T COG1129 77 ------------------------------------------------PRDALAAGIATVHQELSLVPNLSVAENIFLGR 108 (500)
T ss_pred ------------------------------------------------HHHHHhCCcEEEeechhccCCccHHHHhhccc
Confidence 6667778899999999998 679999996543
Q ss_pred C-------CChHHHHH----HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 R-------CHDTELWD----ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 ~-------~sdeeI~~----Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+ .+..++.+ +++..++. ...++ .-.+||+||||.++||||+.++++++
T Consensus 109 e~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~--~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~ 179 (500)
T COG1129 109 EPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDT--LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179 (500)
T ss_pred ccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhh--hhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 2 22233333 33333332 11344 45799999999999999999999876
Q ss_pred ------------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+|.+| .|- .+-||||.||.||+.|
T Consensus 180 E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v 224 (500)
T COG1129 180 ETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224 (500)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEe
Confidence 1245552 222 2349999999999975
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-26 Score=282.90 Aligned_cols=173 Identities=21% Similarity=0.358 Sum_probs=134.9
Q ss_pred cEEEEeeeEEeC--CCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC---CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYR--DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~--~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~---p~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++||+++|+ ++++.+|+|+|+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++++
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~------ 832 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS------ 832 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh------
Confidence 479999999996 233579999999999999999999999999999999999998 788999999987621
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc-ccccchhhc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LFNGTIRYN 589 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~-LFsgTIrEN 589 (677)
++|+.+|||+|++. +++.|++||
T Consensus 833 --------------------------------------------------------~~~~~i~yv~Q~~~~~~~~Tv~E~ 856 (1394)
T TIGR00956 833 --------------------------------------------------------SFQRSIGYVQQQDLHLPTSTVRES 856 (1394)
T ss_pred --------------------------------------------------------hhhcceeeecccccCCCCCCHHHH
Confidence 35778888888765 457899999
Q ss_pred cccCC------CCChH----HHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccch-hh-----
Q psy845 590 LDPFG------RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK-KK----- 651 (677)
Q Consensus 590 I~~~~------~~sde----eI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~-IL----- 651 (677)
+++.. +.+++ ++.++++..++.+. .|+.+ .|.+||||||||++|||||+++|+ ++
T Consensus 857 L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEP 929 (1394)
T TIGR00956 857 LRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEP 929 (1394)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCC
Confidence 97421 22333 35566777666443 56666 466899999999999999999997 54
Q ss_pred -------------------cccccce---ecc-----cccccEEEEEeCC-eeC
Q psy845 652 -------------------KKSGVNI---TRP-----VTSCDKVLVMDNG-QAL 677 (677)
Q Consensus 652 -------------------~~~~~TI---LsT-----I~~aDrIlVLd~G-rIV 677 (677)
..+|+|| .|. .+.|||+++|++| +++
T Consensus 930 TsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv 983 (1394)
T TIGR00956 930 TSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983 (1394)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE
Confidence 1356773 222 2468999999997 874
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-26 Score=233.60 Aligned_cols=146 Identities=25% Similarity=0.410 Sum_probs=110.1
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchh
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSL 538 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~ 538 (677)
|++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---------------------------------- 46 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK---------------------------------- 46 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH----------------------------------
Confidence 5789999999999999999999999999999999999999976421
Q ss_pred HHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc---cccchhhccccCC---------C--CChHHHHHH
Q psy845 539 LVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL---FNGTIRYNLDPFG---------R--CHDTELWDA 604 (677)
Q Consensus 539 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L---FsgTIrENI~~~~---------~--~sdeeI~~A 604 (677)
.|++++|+||++.+ |+.|++||+.++. . ..++++.++
T Consensus 47 -----------------------------~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (223)
T TIGR03771 47 -----------------------------GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDA 97 (223)
T ss_pred -----------------------------hhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHH
Confidence 24567777777665 3578888875321 0 122456778
Q ss_pred HHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce--
Q psy845 605 LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI-- 658 (677)
Q Consensus 605 l~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI-- 658 (677)
++..++.++... ...+||||||||++||||++++|+++ ..+++|+
T Consensus 98 l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii 168 (223)
T TIGR03771 98 LRRVGLTELADR---------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168 (223)
T ss_pred HHHhCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 888887654322 34679999999999999999999976 1235662
Q ss_pred -ec---cc-ccccEEEEEeCCeeC
Q psy845 659 -TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 -Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.| .+ +.||+|+++ +|+++
T Consensus 169 ~sH~~~~~~~~~d~i~~l-~G~i~ 191 (223)
T TIGR03771 169 TTHDLAQAMATCDRVVLL-NGRVI 191 (223)
T ss_pred EeCCHHHHHHhCCEEEEE-CCEEE
Confidence 22 23 349999999 79874
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-26 Score=238.43 Aligned_cols=159 Identities=23% Similarity=0.297 Sum_probs=130.4
Q ss_pred ceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCC
Q psy845 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGK 535 (677)
Q Consensus 456 nISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~ 535 (677)
++||+.+....+||-|+||||||||+|+++|+..|++|+|.+||.-+.+-+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~----------------------------- 66 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAE----------------------------- 66 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeeccc-----------------------------
Confidence 568888886799999999999999999999999999999999998876541
Q ss_pred chhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCC-CChHHHHHHHHHccchhh
Q psy845 536 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGR-CHDTELWDALEKSHLKSK 613 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~-~sdeeI~~Al~~a~l~ef 613 (677)
++....--|++||||+||.-|| +-|+|-|++|+.. .+.++..++.+..|+...
T Consensus 67 -------------------------k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hL 121 (352)
T COG4148 67 -------------------------KGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHL 121 (352)
T ss_pred -------------------------CCcccChhhheeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHH
Confidence 1114445688999999999999 6899999999764 446688889999999988
Q ss_pred HhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc----------------------ccccc---e---eccc---
Q psy845 614 VVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK----------------------KSGVN---I---TRPV--- 662 (677)
Q Consensus 614 I~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~----------------------~~~~T---I---LsTI--- 662 (677)
+++.| ..||||||||+||+|||+.+|+++. ..+.+ | .|.+
T Consensus 122 L~R~P---------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev 192 (352)
T COG4148 122 LDRYP---------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV 192 (352)
T ss_pred HhhCC---------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHH
Confidence 88765 5899999999999999999999771 11112 2 3333
Q ss_pred -ccccEEEEEeCCeeC
Q psy845 663 -TSCDKVLVMDNGQAL 677 (677)
Q Consensus 663 -~~aDrIlVLd~GrIV 677 (677)
+-||+|+||+|||+.
T Consensus 193 ~RLAd~vV~le~GkV~ 208 (352)
T COG4148 193 LRLADRVVVLENGKVK 208 (352)
T ss_pred HhhhheEEEecCCeEE
Confidence 459999999999973
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-26 Score=255.65 Aligned_cols=193 Identities=20% Similarity=0.275 Sum_probs=124.5
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|. +++|+
T Consensus 2 l~i~~ls~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGAK--PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCCc--EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 6899999999753 6999999999999999999999999999999999999999999999872 35788
Q ss_pred ccCCcccccc-ccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc---ccchhhcccc
Q psy845 517 IPQDPVLFNG-IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF---NGTIRYNLDP 592 (677)
Q Consensus 517 v~q~~~lf~~-~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF---sgTIrENI~~ 592 (677)
++|++.++++ ++.+|.. +... ...........+.+.+... ..++.++.+.
T Consensus 69 ~~q~~~~~~~~tv~e~l~---------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVI---------------------MGHT-----ELWEVKQERDRIYALPEMSEEDGMKVADLEVK 122 (530)
T ss_pred EeccCCcCCCCcHHHHHH---------------------HhhH-----HHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 8988877653 3333300 0000 0000000000011111100 0122222211
Q ss_pred C----CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 593 F----GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 593 ~----~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. +...++++.++++..++.+... +. ...+||||||||++||||++++|+++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~--~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l 194 (530)
T PRK15064 123 FAEMDGYTAEARAGELLLGVGIPEEQH------YG--LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWL 194 (530)
T ss_pred HHhcCchhHHHHHHHHHHhCCCChhHh------cC--chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH
Confidence 0 1111244666677776643221 11 34689999999999999999999976
Q ss_pred ----cccccce---ecc---c-ccccEEEEEeCCee
Q psy845 652 ----KKSGVNI---TRP---V-TSCDKVLVMDNGQA 676 (677)
Q Consensus 652 ----~~~~~TI---LsT---I-~~aDrIlVLd~GrI 676 (677)
...+.|| .|. + +-||+|++|++|++
T Consensus 195 ~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 195 EDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred HHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEE
Confidence 1134563 332 2 34999999999997
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-26 Score=236.03 Aligned_cols=151 Identities=23% Similarity=0.247 Sum_probs=102.3
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
||+++|++. .++|+|+| .+++||++||+||||||||||+++|+|+++|++|+|...+. ++..
T Consensus 5 ~~~~~y~~~-~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~-~~~~--------------- 66 (255)
T cd03236 5 EPVHRYGPN-SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPD-WDEI--------------- 66 (255)
T ss_pred CcceeecCc-chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccc-cchh---------------
Confidence 789999754 35999999 59999999999999999999999999999999999972210 0000
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh--hcccccccccccc----cchhhccccCC
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS--RLSVIPQDPVLFN----GTIRYNLDPFG 594 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~--~I~~V~Qd~~LFs----gTIrENI~~~~ 594 (677)
.-.+||.++++...+..|. .+++++|++.++. +++++|+..
T Consensus 67 -------------------------------~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~-- 113 (255)
T cd03236 67 -------------------------------LDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK-- 113 (255)
T ss_pred -------------------------------hhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhch--
Confidence 0012223332222222222 3566666555544 555665532
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
...+++..++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 114 ~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 114 KDERGKLDELVDQLELRHVLDR---------NIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred hHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 1123556777777776543322 45789999999999999999999876
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=255.33 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=58.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
-|+++|++++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~ 68 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP 68 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 48999999999732 4699999999999999999999999999999999999999999999874
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=255.16 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=58.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
-++++|++++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~ 66 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP 66 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 48899999999733 3699999999999999999999999999999999999999999999864
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=251.88 Aligned_cols=163 Identities=17% Similarity=0.305 Sum_probs=122.4
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-++++|++++|+++ ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 318 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~-- 382 (530)
T PRK15064 318 NALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------A-- 382 (530)
T ss_pred ceEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------e--
Confidence 359999999999753 5999999999999999999999999999999999999999999998762 2
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--cc-ccchhhccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LF-NGTIRYNLD 591 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LF-sgTIrENI~ 591 (677)
+++|++|++. ++ +.|++||+.
T Consensus 383 --------------------------------------------------------~i~~~~q~~~~~~~~~~t~~~~~~ 406 (530)
T PRK15064 383 --------------------------------------------------------NIGYYAQDHAYDFENDLTLFDWMS 406 (530)
T ss_pred --------------------------------------------------------EEEEEcccccccCCCCCcHHHHHH
Confidence 3455555542 22 347777774
Q ss_pred cCC--CCChHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc----------------
Q psy845 592 PFG--RCHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK---------------- 652 (677)
Q Consensus 592 ~~~--~~sdeeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~---------------- 652 (677)
... ...++++.++++..++. +.. +. ...+||||||||++||||++++|+++.
T Consensus 407 ~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~--~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 477 (530)
T PRK15064 407 QWRQEGDDEQAVRGTLGRLLFSQDDI-------KK--SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESL 477 (530)
T ss_pred HhccCCccHHHHHHHHHHcCCChhHh-------cC--cccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 321 22345577778887763 222 22 467999999999999999999999771
Q ss_pred -----ccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 653 -----KSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 -----~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.-+.|| .|. + +.||||++|++|+++
T Consensus 478 ~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 478 NMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 112352 232 2 249999999999974
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-25 Score=231.45 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=106.3
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
.++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.. ++++|
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~-------------~~~~~----------- 92 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV-------------SVIAI----------- 92 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE-------------eEEec-----------
Confidence 458999999999999999999999999999999999999999999999852 12222
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC---CCCChHHH----H
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF---GRCHDTEL----W 602 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~---~~~sdeeI----~ 602 (677)
++.++ ..|++||+.+. ...+.++. .
T Consensus 93 -----------------------------------------------~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 125 (264)
T PRK13546 93 -----------------------------------------------SAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP 125 (264)
T ss_pred -----------------------------------------------ccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22222 35788887532 12233333 2
Q ss_pred HHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce
Q psy845 603 DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI 658 (677)
Q Consensus 603 ~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI 658 (677)
++++..++.+++.. ...+||||||||++||||++++|+++ ...++||
T Consensus 126 ~~l~~~~l~~~~~~---------~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~ti 196 (264)
T PRK13546 126 KIIEFSELGEFIYQ---------PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI 196 (264)
T ss_pred HHHHHcCCchhhcC---------CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 34445555443321 46799999999999999999999976 1235563
Q ss_pred ---ec---ccc-cccEEEEEeCCeeC
Q psy845 659 ---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 659 ---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
.| .+. .||+|++|++|+++
T Consensus 197 IiisH~~~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 197 FFVSHNLGQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred EEEcCCHHHHHHHcCEEEEEECCEEE
Confidence 22 233 48999999999974
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-25 Score=219.22 Aligned_cols=171 Identities=29% Similarity=0.425 Sum_probs=129.5
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccc-cccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGIVG 529 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~l-f~~~~~ 529 (677)
..+.+.|||+.++|+++||+|.+|||||||+|+|+|..+|++|+|++||+++.--+-..-.++|-+++|||-- |
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~----- 100 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSL----- 100 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCcccc-----
Confidence 3589999999999999999999999999999999999999999999999998665445556778888888641 1
Q ss_pred cCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHcc
Q psy845 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSH 609 (677)
Q Consensus 530 ~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~ 609 (677)
++ |-+||-+... .++-|-++..+...+++.+.++.+|
T Consensus 101 ----------------------------------NP---Rl~iGqiLd~------PL~l~T~~~~~~R~~~i~~TL~~VG 137 (267)
T COG4167 101 ----------------------------------NP---RLRIGQILDF------PLRLNTDLEPEQRRKQIFETLRMVG 137 (267)
T ss_pred ----------------------------------Ch---hhhhhhHhcc------hhhhcccCChHHHHHHHHHHHHHhc
Confidence 11 4455544333 3455544434455677999999999
Q ss_pred chhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------------------ccccc-e-----
Q psy845 610 LKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK-------------------------KSGVN-I----- 658 (677)
Q Consensus 610 l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~-------------------------~~~~T-I----- 658 (677)
+. |+. +......||-|||||+|+||||+-+|+|.. ..|.. |
T Consensus 138 L~------Pdh--an~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qh 209 (267)
T COG4167 138 LL------PDH--ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred cC------ccc--cccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEech
Confidence 85 443 333677999999999999999999999761 11222 2
Q ss_pred eccccc-ccEEEEEeCCeeC
Q psy845 659 TRPVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 659 LsTI~~-aDrIlVLd~GrIV 677 (677)
+-.+++ +|+|+||++|++|
T Consensus 210 lG~iKHi~D~viVM~EG~vv 229 (267)
T COG4167 210 IGMIKHISDQVLVMHEGEVV 229 (267)
T ss_pred hhHhhhhcccEEEEecCcee
Confidence 233444 8999999999975
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-25 Score=244.25 Aligned_cols=180 Identities=23% Similarity=0.383 Sum_probs=138.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++.+|++ -.+++||||++++||+-|+.|+||||||||++.|.|+|+|++|+|.+||++++--+
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~s--------- 72 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKS--------- 72 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCC---------
Confidence 5899999999984 36899999999999999999999999999999999999999999999999875431
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+.+..|..||+|.|.+.|+ +-|+.|||.++.
T Consensus 73 ------------------------------------------------P~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~ 104 (501)
T COG3845 73 ------------------------------------------------PRDAIRLGIGMVHQHFMLVPTLTVAENIILGL 104 (501)
T ss_pred ------------------------------------------------HHHHHHcCCcEEeeccccccccchhhhhhhcC
Confidence 6777888899999999998 569999997654
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC----CCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV----QGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v----~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
+.+.- -..........+.++-+.|.-.+ .-..||-|||||+-|-+||+|+++++
T Consensus 105 e~~~~---~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~ 181 (501)
T COG3845 105 EPSKG---GLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE 181 (501)
T ss_pred ccccc---cccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 32100 00011111122223333233223 56899999999999999999999976
Q ss_pred -----cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+|+|| .| -++ -|||+-||.+||++
T Consensus 182 ~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 182 ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 3467883 33 333 39999999999974
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-25 Score=219.28 Aligned_cols=168 Identities=24% Similarity=0.293 Sum_probs=127.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+..+|++.+|++....+|+|+|++|++||.++++||||||||||+|+++||.+|+.|+|.+||..|+.-.
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg---------- 73 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG---------- 73 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC----------
Confidence 4567899999876556999999999999999999999999999999999999999999999999886531
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
| .=|+|+|++-|+. .|+.||+.++-
T Consensus 74 ----------------a-------------------------------------ergvVFQ~~~LlPWl~~~dNvafgL~ 100 (259)
T COG4525 74 ----------------A-------------------------------------ERGVVFQNEALLPWLNVIDNVAFGLQ 100 (259)
T ss_pred ----------------c-------------------------------------cceeEeccCccchhhHHHHHHHHHHH
Confidence 1 1256777777775 58999997642
Q ss_pred --CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.....+ ..+.+..+|+.++=.+ ...+||||||||+.|||||.-+|+.+
T Consensus 101 l~Gi~k~~R~~~a~q~l~~VgL~~~~~~---------~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~m 171 (259)
T COG4525 101 LRGIEKAQRREIAHQMLALVGLEGAEHK---------YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171 (259)
T ss_pred hcCCCHHHHHHHHHHHHHHhCccccccc---------ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHH
Confidence 233332 2334556666544211 46799999999999999999999865
Q ss_pred --------cccccc---eeccccc----ccEEEEEeC--Cee
Q psy845 652 --------KKSGVN---ITRPVTS----CDKVLVMDN--GQA 676 (677)
Q Consensus 652 --------~~~~~T---ILsTI~~----aDrIlVLd~--GrI 676 (677)
...++- |+|.+.. |||++||+- |||
T Consensus 172 QelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRv 213 (259)
T COG4525 172 QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213 (259)
T ss_pred HHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCcee
Confidence 112332 4666665 899999985 454
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-25 Score=217.57 Aligned_cols=186 Identities=27% Similarity=0.409 Sum_probs=147.5
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++|+..+|++. .|||+||++.++|+.+.|+|.|||||||+++++.=+-.|+.|+|.++|.+|+-.
T Consensus 5 ~~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k--------- 73 (256)
T COG4598 5 NALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLK--------- 73 (256)
T ss_pred cceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEee---------
Confidence 368899999999765 599999999999999999999999999999999999999999999999998665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccc--
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLD-- 591 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~-- 591 (677)
+-.+|+++-.|.. ..+.+|.++++|+|...|+ +.|+-||.-
T Consensus 74 --------------------------------~~~~G~l~~ad~~----q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa 117 (256)
T COG4598 74 --------------------------------RDKDGQLKPADKR----QLQRLRTRLGMVFQHFNLWSHMTVLENVIEA 117 (256)
T ss_pred --------------------------------eCCCCCeeeCCHH----HHHHHHHHhhHhhhhcchhHHHHHHHHHHhc
Confidence 2235666655555 7889999999999999999 579999983
Q ss_pred cC---CCCChHHHH---HHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 592 PF---GRCHDTELW---DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 592 ~~---~~~sdeeI~---~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
|- +...+|.++ .-+.++|+++.-+. ....|||||+||.||||||.-+|+++
T Consensus 118 PvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~---------YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElV 188 (256)
T COG4598 118 PVHVLGVSKAEAIERAEKYLAKVGIAEKADA---------YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELV 188 (256)
T ss_pred chHhhcCCHHHHHHHHHHHHHHhCchhhhhc---------CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHH
Confidence 21 122233333 34667787765443 45789999999999999999988754
Q ss_pred ----------cccccc-e--eccc---cc-ccEEEEEeCCee
Q psy845 652 ----------KKSGVN-I--TRPV---TS-CDKVLVMDNGQA 676 (677)
Q Consensus 652 ----------~~~~~T-I--LsTI---~~-aDrIlVLd~GrI 676 (677)
+.+|+| + ++.. ++ +.+++.+.+|+|
T Consensus 189 gEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 189 GEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred HHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 346888 2 3322 22 689999999987
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-25 Score=244.44 Aligned_cols=163 Identities=24% Similarity=0.284 Sum_probs=121.8
Q ss_pred ccEEEEeeeEEeCCCC-CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 435 GTIKFKNVSLRYRDNW-PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 435 g~I~fknVsFsY~~~~-~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
..++++|++|+|+++. +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+.. +
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~-i-------- 90 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL-I-------- 90 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee-E--------
Confidence 3589999999997642 36999999999999999999999999999999999999999999999997520 0
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
.+ ++.++ ..|++||+.+
T Consensus 91 ----~~----------------------------------------------------------~~~l~~~lTV~EnL~l 108 (549)
T PRK13545 91 ----AI----------------------------------------------------------SSGLNGQLTGIENIEL 108 (549)
T ss_pred ----Ee----------------------------------------------------------ccccCCCCcHHHHHHh
Confidence 00 01111 3488999864
Q ss_pred CC---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
.. ..++++ +.++++.+++.++..+ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~---------~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr 179 (549)
T PRK13545 109 KGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ---------PVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT 179 (549)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHcCChhHhhC---------CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 21 223333 3456677777655433 45789999999999999999999976
Q ss_pred ----------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...++|| .|. + +.||+|++|++|+++
T Consensus 180 ~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv 222 (549)
T PRK13545 180 KKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK 222 (549)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1135663 222 3 349999999999973
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-25 Score=207.14 Aligned_cols=62 Identities=39% Similarity=0.634 Sum_probs=57.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCE
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~ 500 (677)
++++|++++|++. ++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~ 62 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST 62 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe
Confidence 4689999999753 5999999999999999999999999999999999999999999999873
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-25 Score=211.45 Aligned_cols=177 Identities=26% Similarity=0.374 Sum_probs=139.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec--ccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI--ASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI--~~l~~~~~~~~ 513 (677)
.|+++|++|.|+.. .+|-||+|+.+.||++.+.||||+|||||++.|.=+--|.+|+..|-|... .+.+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~------- 72 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP------- 72 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCc-------
Confidence 48899999999764 599999999999999999999999999999999999999999999976543 2221
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccc-
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLD- 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~- 591 (677)
++....+||+++|+|+|...|+ +.|+-||+-
T Consensus 73 -----------------------------------------------~~k~i~~lr~~vgmvfqqy~lwphltv~enlie 105 (242)
T COG4161 73 -----------------------------------------------SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIE 105 (242)
T ss_pred -----------------------------------------------cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHh
Confidence 0115678999999999999998 679999993
Q ss_pred -cCC--CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc------------
Q psy845 592 -PFG--RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------ 652 (677)
Q Consensus 592 -~~~--~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------ 652 (677)
|.+ ..+++| -.+.++...+.++.++.| -.|||||.||+||||||.-+|+++.
T Consensus 106 ap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p---------lhlsggqqqrvaiaralmmkpqvllfdeptaaldpei 176 (242)
T COG4161 106 APCRVLGLSKDQALARAEKLLKRLRLKPYADRYP---------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred hhHHHhCCCHHHHHHHHHHHHHHhccccccccCc---------eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence 321 233333 345667777877777765 4799999999999999999998762
Q ss_pred ------------ccccc--e-eccc----ccccEEEEEeCCeeC
Q psy845 653 ------------KSGVN--I-TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------~~~~T--I-LsTI----~~aDrIlVLd~GrIV 677 (677)
-.|.| | .+.+ +-|.|++.||+|+||
T Consensus 177 taqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 177 TAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred HHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 23444 2 3332 348999999999986
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-24 Score=224.30 Aligned_cols=128 Identities=23% Similarity=0.317 Sum_probs=96.7
Q ss_pred EEeCCCCCccccceeeEEe-----CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccccc
Q psy845 444 LRYRDNWPLVLANVSFRIN-----HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518 (677)
Q Consensus 444 FsY~~~~~~VLknISl~I~-----~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~ 518 (677)
|+|++.. ..++|+|++++ +||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------------ 61 (246)
T cd03237 1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------------ 61 (246)
T ss_pred CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------------
Confidence 5787553 48889999887 69999999999999999999999999999999998873
Q ss_pred CCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCCC-C
Q psy845 519 QDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFGR-C 596 (677)
Q Consensus 519 q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~~-~ 596 (677)
+++|+||++.. +++|++||+..... .
T Consensus 62 ----------------------------------------------------~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 89 (246)
T cd03237 62 ----------------------------------------------------TVSYKPQYIKADYEGTVRDLLSSITKDF 89 (246)
T ss_pred ----------------------------------------------------eEEEecccccCCCCCCHHHHHHHHhhhc
Confidence 24555666543 57788888853211 1
Q ss_pred --ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 597 --HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 597 --sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..+...++++..++.+.. +. ...+||||||||++|||||+++|+++
T Consensus 90 ~~~~~~~~~~l~~l~l~~~~-------~~--~~~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 90 YTHPYFKTEIAKPLQIEQIL-------DR--EVPELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred cccHHHHHHHHHHcCCHHHh-------hC--ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 122345566666654432 22 45789999999999999999999876
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-25 Score=219.57 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=105.9
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE-ECCEecccccHHHhhhhcccccCCccccccccccC
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK-IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~-IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n 531 (677)
||+|+||++++||++||+||||||||||+++|+|+++|++|+|. ++|.++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---------------------------- 53 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---------------------------- 53 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec----------------------------
Confidence 79999999999999999999999999999999999999999997 6664320
Q ss_pred CCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC---CCChHHHHHHHHH
Q psy845 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG---RCHDTELWDALEK 607 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~---~~sdeeI~~Al~~ 607 (677)
+.|++.+|. .|++||+.+.. ..+.++..+.+..
T Consensus 54 -------------------------------------------~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 90 (213)
T PRK15177 54 -------------------------------------------LGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQ 90 (213)
T ss_pred -------------------------------------------cccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 123455665 49999996432 2333443332211
Q ss_pred ccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------cccccce---e--
Q psy845 608 SHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-----------------------KKSGVNI---T-- 659 (677)
Q Consensus 608 a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~TI---L-- 659 (677)
...+++..++ ....||||||||++||||++++|+++ ..+++|+ .
T Consensus 91 ------~~~l~~~~~~--~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~ 162 (213)
T PRK15177 91 ------LTQLEQCYTD--RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHN 162 (213)
T ss_pred ------HhChhHHhhc--hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECC
Confidence 2234555555 34689999999999999999999865 1133442 2
Q ss_pred -ccc-ccccEEEEEeCCeeC
Q psy845 660 -RPV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 660 -sTI-~~aDrIlVLd~GrIV 677 (677)
+.+ +.||+|++|++|+++
T Consensus 163 ~~~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 163 PRLIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred HHHHHHhcCeeEEEECCeEE
Confidence 223 349999999999974
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=204.92 Aligned_cols=126 Identities=40% Similarity=0.634 Sum_probs=107.3
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++|++++|++. ++++|+|+++++||+++|+||||||||||+++|+|.++|++|+|.+||.++.+.
T Consensus 1 ~~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~------------ 66 (157)
T cd00267 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL------------ 66 (157)
T ss_pred CeEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC------------
Confidence 368999999754 599999999999999999999999999999999999999999999999988665
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCC
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH 597 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~s 597 (677)
..+.++++++|++|
T Consensus 67 ----------------------------------------------~~~~~~~~i~~~~q-------------------- 80 (157)
T cd00267 67 ----------------------------------------------PLEELRRRIGYVPQ-------------------- 80 (157)
T ss_pred ----------------------------------------------CHHHHHhceEEEee--------------------
Confidence 44567788999998
Q ss_pred hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------c--c
Q psy845 598 DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------K--K 653 (677)
Q Consensus 598 deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------~--~ 653 (677)
|||||+||++||||++++|+++ . .
T Consensus 81 --------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~ 128 (157)
T cd00267 81 --------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE 128 (157)
T ss_pred --------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999866 1 1
Q ss_pred cccce---e---ccccc-ccEEEEEeCCe
Q psy845 654 SGVNI---T---RPVTS-CDKVLVMDNGQ 675 (677)
Q Consensus 654 ~~~TI---L---sTI~~-aDrIlVLd~Gr 675 (677)
.++|+ . +.+.+ ||+++++++|+
T Consensus 129 ~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 129 EGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 23562 2 23344 69999999986
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-25 Score=216.67 Aligned_cols=172 Identities=30% Similarity=0.410 Sum_probs=135.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+.+|.+. .|++|+|++|++|..++|+||+|||||||+.+++|+..+++|+|.+||.++.+.
T Consensus 2 I~i~nv~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~----------- 68 (252)
T COG4604 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTST----------- 68 (252)
T ss_pred eeehhhhHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccC-----------
Confidence 6789999999764 699999999999999999999999999999999999999999999999999998
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
+-++|-+.+++.-|+..+= .-|+||=..+++
T Consensus 69 -----------------------------------------------~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 69 -----------------------------------------------PSKELAKKLSILKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred -----------------------------------------------ChHHHHHHHHHHHhhchhhheeEHHHHhhcCCC
Confidence 5556666666666666664 568998886543
Q ss_pred -----CCCh---HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 -----RCHD---TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 -----~~sd---eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
+.+. ..+.+|++-.++.+.-.+ .-.+||||||||--||-.+.++.+-.
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dr---------yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv 172 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDR---------YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSV 172 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHH---------hHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHH
Confidence 2222 226778887777654322 23479999999999999999887621
Q ss_pred ----------cccccce---ecccc----cccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TRPVT----SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---LsTI~----~aDrIlVLd~GrIV 677 (677)
..-++|| +|.|. .+|.|+-|+||+++
T Consensus 173 ~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv 215 (252)
T COG4604 173 QIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV 215 (252)
T ss_pred HHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE
Confidence 1235673 77663 37999999999985
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-24 Score=232.74 Aligned_cols=140 Identities=28% Similarity=0.355 Sum_probs=108.3
Q ss_pred EEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhh
Q psy845 469 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL 548 (677)
Q Consensus 469 IVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~ 548 (677)
|+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~------------------------------------------- 37 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV------------------------------------------- 37 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC-------------------------------------------
Confidence 5899999999999999999999999999999988665
Q ss_pred ccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC---CCC----hHHHHHHHHHccchhhHhhhhcc
Q psy845 549 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG---RCH----DTELWDALEKSHLKSKVVTMRSK 620 (677)
Q Consensus 549 ~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~---~~s----deeI~~Al~~a~l~efI~~LP~G 620 (677)
+. .+++++|++|++.+|. .|++||+.++. ..+ ++++.++++..++.++..+
T Consensus 38 ---------------~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---- 96 (325)
T TIGR01187 38 ---------------PP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADR---- 96 (325)
T ss_pred ---------------CH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcC----
Confidence 22 3568999999998886 59999997531 122 2345667777777655433
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cc-cccce---eccc----ccccEE
Q psy845 621 LDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KK-SGVNI---TRPV----TSCDKV 668 (677)
Q Consensus 621 ldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~-~~~TI---LsTI----~~aDrI 668 (677)
...+||||||||++||||++++|+++ .. .++|+ .|.. +-||||
T Consensus 97 -----~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i 171 (325)
T TIGR01187 97 -----KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRI 171 (325)
T ss_pred -----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 34689999999999999999999976 11 25663 3322 349999
Q ss_pred EEEeCCeeC
Q psy845 669 LVMDNGQAL 677 (677)
Q Consensus 669 lVLd~GrIV 677 (677)
++|++|+++
T Consensus 172 ~vl~~G~i~ 180 (325)
T TIGR01187 172 AIMRKGKIA 180 (325)
T ss_pred EEEECCEEE
Confidence 999999974
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-24 Score=241.94 Aligned_cols=138 Identities=27% Similarity=0.351 Sum_probs=105.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-++++||+++|++. .+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.+++ + .
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~---~--------- 387 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T---V--------- 387 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c---e---------
Confidence 359999999999753 599999999999999999999999999999999999999999998853 1 1
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-ccc-ccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLF-NGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~LF-sgTIrENI~~ 592 (677)
++||+||++ .++ +.|++||+..
T Consensus 388 --------------------------------------------------------~i~~v~q~~~~~~~~~tv~e~l~~ 411 (556)
T PRK11819 388 --------------------------------------------------------KLAYVDQSRDALDPNKTVWEEISG 411 (556)
T ss_pred --------------------------------------------------------EEEEEeCchhhcCCCCCHHHHHHh
Confidence 366667765 444 4588999864
Q ss_pred CCC---C--ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 593 FGR---C--HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 593 ~~~---~--sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
... . .+++..++++..++.+. ..+. ...+||||||||++||||++++|+++
T Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~--~~~~LSgG~~qrv~la~al~~~p~ll 467 (556)
T PRK11819 412 GLDIIKVGNREIPSRAYVGRFNFKGG------DQQK--KVGVLSGGERNRLHLAKTLKQGGNVL 467 (556)
T ss_pred hcccccccccHHHHHHHHHhCCCChh------HhcC--chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 311 1 12334445555554311 1122 45799999999999999999999977
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-24 Score=240.24 Aligned_cols=138 Identities=26% Similarity=0.336 Sum_probs=104.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-++++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ + .
T Consensus 321 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~---~--------- 385 (552)
T TIGR03719 321 KVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T---V--------- 385 (552)
T ss_pred eEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c---e---------
Confidence 359999999999753 599999999999999999999999999999999999999999998853 1 1
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc-cc-ccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LF-NGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~-LF-sgTIrENI~~ 592 (677)
+++|+||++. ++ +.|++||+..
T Consensus 386 --------------------------------------------------------~i~~v~q~~~~~~~~~tv~e~l~~ 409 (552)
T TIGR03719 386 --------------------------------------------------------KLAYVDQSRDALDPNKTVWEEISG 409 (552)
T ss_pred --------------------------------------------------------EEEEEeCCccccCCCCcHHHHHHh
Confidence 3566677652 44 4588998864
Q ss_pred CCC---CC--hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 593 FGR---CH--DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 593 ~~~---~s--deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
... .. +++..++++..++.+.. .+. ...+||||||||++||||++.+|+++
T Consensus 410 ~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~--~~~~LSgGe~qrv~la~al~~~p~ll 465 (552)
T TIGR03719 410 GLDIIQLGKREVPSRAYVGRFNFKGSD------QQK--KVGQLSGGERNRVHLAKTLKSGGNVL 465 (552)
T ss_pred hccccccCcchHHHHHHHHhCCCChhH------hcC--chhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 321 11 22334455555543110 112 45789999999999999999999976
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-24 Score=261.14 Aligned_cols=175 Identities=21% Similarity=0.226 Sum_probs=133.2
Q ss_pred ccEEEEeeeEEeCC-----------CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC--CccEEEECCEe
Q psy845 435 GTIKFKNVSLRYRD-----------NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFD 501 (677)
Q Consensus 435 g~I~fknVsFsY~~-----------~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G~I~IdG~d 501 (677)
..+.++||++..+. +...+|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 36999999998742 123699999999999999999999999999999999999763 68999999977
Q ss_pred cccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc
Q psy845 502 IASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 581 (677)
Q Consensus 502 I~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L 581 (677)
.++ ...|+.+|||+|++.+
T Consensus 946 ~~~-------------------------------------------------------------~~~~~~igyv~Q~d~~ 964 (1470)
T PLN03140 946 KKQ-------------------------------------------------------------ETFARISGYCEQNDIH 964 (1470)
T ss_pred CCh-------------------------------------------------------------HHhhhheEEEcccccc
Confidence 532 2456778888888777
Q ss_pred c-ccchhhccccC------CCCChH----HHHHHHHHccchhhHhhhhcccCCCCC---CCCCChHHHHHHHHHHHHhcc
Q psy845 582 F-NGTIRYNLDPF------GRCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQ---GDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 582 F-sgTIrENI~~~------~~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~---G~~LSGGQRQRIaIARALLr~ 647 (677)
+ +.|++||+.+. .+.+++ .+.++++..++.+. .|+.++ ...||||||||++|||||+.+
T Consensus 965 ~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~~~~LSgGerkRvsIa~aL~~~ 1037 (1470)
T PLN03140 965 SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPGVTGLSTEQRKRLTIAVELVAN 1037 (1470)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCCCCCcCHHHHHHHHHHHHHhhC
Confidence 6 46999999642 122323 25667777776543 345541 368999999999999999999
Q ss_pred chhh------------------------cccccce---ecc-----cccccEEEEEeC-CeeC
Q psy845 648 TKKK------------------------KKSGVNI---TRP-----VTSCDKVLVMDN-GQAL 677 (677)
Q Consensus 648 p~IL------------------------~~~~~TI---LsT-----I~~aDrIlVLd~-GrIV 677 (677)
|+++ ..+|+|| .|. .+.||++++|++ |+++
T Consensus 1038 P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140 1038 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence 9976 1246673 332 245999999997 8864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=245.58 Aligned_cols=164 Identities=23% Similarity=0.302 Sum_probs=120.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-++++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++. .++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------eeE
Confidence 359999999999654 35999999999999999999999999999999999999999999998652 346
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc---
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD--- 591 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~--- 591 (677)
||++|++.. ..++.+|..
T Consensus 575 gyv~Q~~~~-----------------------------------------------------------~l~~~~~~~~~~ 595 (718)
T PLN03073 575 AVFSQHHVD-----------------------------------------------------------GLDLSSNPLLYM 595 (718)
T ss_pred EEEeccccc-----------------------------------------------------------cCCcchhHHHHH
Confidence 777776421 111111110
Q ss_pred --cCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-----------------
Q psy845 592 --PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK----------------- 652 (677)
Q Consensus 592 --~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~----------------- 652 (677)
.....+++++.++++..++.+... +. ...+||||||||++||||++++|+++.
T Consensus 596 ~~~~~~~~~~~i~~~L~~~gl~~~~~------~~--~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~ 667 (718)
T PLN03073 596 MRCFPGVPEQKLRAHLGSFGVTGNLA------LQ--PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALI 667 (718)
T ss_pred HHhcCCCCHHHHHHHHHHCCCChHHh------cC--CccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 011234567788888888753211 11 467999999999999999999999771
Q ss_pred ----ccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 653 ----KSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+.|| .|. +. .||||++|++|+++
T Consensus 668 ~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 668 QGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 012252 222 22 49999999999974
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-24 Score=212.40 Aligned_cols=173 Identities=24% Similarity=0.307 Sum_probs=127.7
Q ss_pred CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccc
Q psy845 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529 (677)
Q Consensus 450 ~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~ 529 (677)
++++|+++|++|++||.+-++|.+||||||+++.++|-..|++|+|.|||+|+++.+..+-...++-|+|||-.=.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt---- 93 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT---- 93 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCC----
Confidence 4579999999999999999999999999999999999999999999999999999965555555555555543211
Q ss_pred cCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC----CCChHHHHHHH
Q psy845 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG----RCHDTELWDAL 605 (677)
Q Consensus 530 ~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~----~~sdeeI~~Al 605 (677)
--+.||.||+.... +-.-..-.+.-
T Consensus 94 ---------------------------------------------------~~~lTieENl~la~~Rg~~rgl~~~ln~~ 122 (263)
T COG1101 94 ---------------------------------------------------APELTIEENLALAESRGKKRGLSSALNER 122 (263)
T ss_pred ---------------------------------------------------cccccHHHHHHHHHhcCcccccchhhhHH
Confidence 01569999995321 10000001111
Q ss_pred HHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhhccc-------------------------ccc-
Q psy845 606 EKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKKKKS-------------------------GVN- 657 (677)
Q Consensus 606 ~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL~~~-------------------------~~T- 657 (677)
....-.+.+..+|.|++-.+ +-.-|||||||=++++-|.++.|+++... +.|
T Consensus 123 ~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTt 202 (263)
T COG1101 123 RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTT 202 (263)
T ss_pred HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCce
Confidence 22233455777888888777 66789999999999999999999988211 122
Q ss_pred --eeccccc----ccEEEEEeCCeeC
Q psy845 658 --ITRPVTS----CDKVLVMDNGQAL 677 (677)
Q Consensus 658 --ILsTI~~----aDrIlVLd~GrIV 677 (677)
|+|..++ -+|.++|++|+||
T Consensus 203 lMVTHnm~~Al~yG~RlImLh~G~Iv 228 (263)
T COG1101 203 LMVTHNMEDALDYGNRLIMLHSGKIV 228 (263)
T ss_pred EEEeccHHHHHhhCCeEEEEeCCeEE
Confidence 3555444 5999999999986
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=242.69 Aligned_cols=163 Identities=20% Similarity=0.302 Sum_probs=118.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ |.+ +
T Consensus 319 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~---~---------- 382 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK---L---------- 382 (635)
T ss_pred eEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC---c----------
Confidence 48999999999753 5999999999999999999999999999999999999999999988 322 1
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-ccc-ccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLF-NGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~LF-sgTIrENI~~~ 593 (677)
+++|++|++ .++ +.|+.||+...
T Consensus 383 -------------------------------------------------------~i~y~~q~~~~l~~~~tv~e~l~~~ 407 (635)
T PRK11147 383 -------------------------------------------------------EVAYFDQHRAELDPEKTVMDNLAEG 407 (635)
T ss_pred -------------------------------------------------------EEEEEeCcccccCCCCCHHHHHHhh
Confidence 356666654 244 45888888642
Q ss_pred C-CC--C--hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcc---------------
Q psy845 594 G-RC--H--DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKK--------------- 653 (677)
Q Consensus 594 ~-~~--s--deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~--------------- 653 (677)
. .. . ++++.+.++..++.+ +..+. ....||||||||++||||++++|+++.+
T Consensus 408 ~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~--~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l 479 (635)
T PRK11147 408 KQEVMVNGRPRHVLGYLQDFLFHP------KRAMT--PVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479 (635)
T ss_pred cccccccchHHHHHHHHHhcCCCH------HHHhC--hhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 1 11 1 233445555554421 11222 4578999999999999999999997711
Q ss_pred ------cccce---ecc---c-ccccEEEEEe-CCeeC
Q psy845 654 ------SGVNI---TRP---V-TSCDKVLVMD-NGQAL 677 (677)
Q Consensus 654 ------~~~TI---LsT---I-~~aDrIlVLd-~GrIV 677 (677)
-+.|| .|. + +-||+|++++ +|+++
T Consensus 480 ~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~ 517 (635)
T PRK11147 480 EELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIG 517 (635)
T ss_pred HHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEE
Confidence 12352 222 2 2499999998 89873
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=212.00 Aligned_cols=177 Identities=26% Similarity=0.327 Sum_probs=126.2
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH-HHhhhh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSR 513 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~-~~~~~~ 513 (677)
.-|+++||+++|.++ ++|+|+|++|++||+.+|+||||||||||++++++.+.|++|.+.+-|+.....+. .++|++
T Consensus 30 ~li~l~~v~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 459999999999764 69999999999999999999999999999999999999999999999999877654 455555
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc--
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD-- 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~-- 591 (677)
||+|+.+. ++-+.=+.+++|=+.
T Consensus 108 IG~vS~~L-------------------------------------------------------~~~~~~~~~v~dvVlSg 132 (257)
T COG1119 108 IGLVSSEL-------------------------------------------------------HERFRVRETVRDVVLSG 132 (257)
T ss_pred hCccCHHH-------------------------------------------------------Hhhcccccccceeeeec
Confidence 55554321 111111344454441
Q ss_pred cC-------CCCChHHHHH---HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc---------
Q psy845 592 PF-------GRCHDTELWD---ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK--------- 652 (677)
Q Consensus 592 ~~-------~~~sdeeI~~---Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~--------- 652 (677)
++ .++++++..+ .++..++.+..++ .-..||-|||||+-||||++++|+++.
T Consensus 133 ~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r---------~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLD 203 (257)
T COG1119 133 FFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR---------PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203 (257)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcchhhhccC---------chhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCC
Confidence 11 1344544433 4555555442211 346899999999999999999999761
Q ss_pred ----------------cc-ccc---eeccc----ccccEEEEEeCCeeC
Q psy845 653 ----------------KS-GVN---ITRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----------------~~-~~T---ILsTI----~~aDrIlVLd~GrIV 677 (677)
.. +.+ |.|.. ...++++.+++|+++
T Consensus 204 l~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 204 LIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee
Confidence 11 112 23433 346999999999985
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-23 Score=256.71 Aligned_cols=161 Identities=22% Similarity=0.191 Sum_probs=121.6
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC----CCCccEEEECCEecccccHHHhhhhcccccCCcccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV----ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y----~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~ 526 (677)
+.+|+|+|+++++||.+||+||||||||||+|+|+|.. .|++|+|.+||.++++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~--------------------- 132 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI--------------------- 132 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHH---------------------
Confidence 35999999999999999999999999999999999986 57899999999887554
Q ss_pred ccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC----------C
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG----------R 595 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~----------~ 595 (677)
+ +..|+.++||+|++.++. .|++||+.+.. +
T Consensus 133 -------------------------------------~-~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 174 (1394)
T TIGR00956 133 -------------------------------------K-KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDG 174 (1394)
T ss_pred -------------------------------------H-hhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCC
Confidence 2 345677889999887774 69999996421 1
Q ss_pred CChHHH-----HHHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 596 CHDTEL-----WDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 596 ~sdeeI-----~~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
.+.+|. .++++..++. +-.||.+ ....||||||||++||||++++|+++
T Consensus 175 ~~~~~~~~~~~~~~l~~lgL~-------~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~ 247 (1394)
T TIGR00956 175 VSREEYAKHIADVYMATYGLS-------HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALE 247 (1394)
T ss_pred CCHHHHHHHHHHHHHHHcCcc-------cccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHH
Confidence 222222 2244555443 3356665 24689999999999999999999976
Q ss_pred --------cc-cccce---eccc-----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV-----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI-----~~aDrIlVLd~GrIV 677 (677)
.. .|+|+ +|.. +.+|||++|++|+++
T Consensus 248 i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv 290 (1394)
T TIGR00956 248 FIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290 (1394)
T ss_pred HHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence 12 36673 3322 348999999999974
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-23 Score=200.69 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=53.7
Q ss_pred EeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 440 knVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
+||+++|++. .+++| ++++++||++||+||||||||||+++|+|+++|++|+|.+||.+
T Consensus 4 ~~l~~~~~~~--~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 62 (177)
T cd03222 4 PDCVKRYGVF--FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT 62 (177)
T ss_pred CCeEEEECCE--EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 5889999653 58998 59999999999999999999999999999999999999999854
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-18 Score=191.46 Aligned_cols=460 Identities=16% Similarity=0.146 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh----hhhhhhhHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 116 LLIITTLYHLISKVFRSVYLRSVFQ----NMWSMLFAFLMICFVFPW--FALPLLIITTLYHLISKVFRSVYLRSVFQNM 189 (677)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~q~~ 189 (677)
.|+++--+-+++.-|+|+|.....- +.---...++.. -.+-| .++|+-.+.-.+|++-.-..--.+.. +
T Consensus 118 gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~-~LlkW~liaiPAtFvNS~Iryle~klaLafrtr----L 192 (728)
T KOG0064|consen 118 GLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLW-DLLKWFLIAIPASFVNSAIRYLESKLALAFRTR----L 192 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH-HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 4556666778888899999765443 332223333332 22356 45666667766665443222222222 2
Q ss_pred HHHHHHHHhhhcccccccc---------chhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH----H
Q psy845 190 WSMLFAFLMICFVFPWFAL---------PLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL----P 256 (677)
Q Consensus 190 ~~~~f~~~~~~~~~~~f~~---------~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal----~ 256 (677)
+. ++|=+-+....||+. |...+|.|....++-... -..++..-++-++..-..+.-..-.... .
T Consensus 193 ~~--h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svah-LysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~ 269 (728)
T KOG0064|consen 193 TR--HAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAH-LYSNLTKPVLDLILISFTLLDSATSVGAAGITL 269 (728)
T ss_pred HH--HHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhccccccchhh
Confidence 22 333344444467632 235556555544432211 1122222222222111112111111100 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 257 LLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRW 336 (677)
Q Consensus 257 ~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (677)
+.....+...+.+.+.++..++-.++....+.+...-+..+++-++|--|+..+.+.++.++..+..............|
T Consensus 270 ~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~ 349 (728)
T KOG0064|consen 270 AGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLW 349 (728)
T ss_pred hhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222334555666666666666667777888888889999999999999999998888887766554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HhcCCC---H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 337 LAVRIDVLAVIAMAIITGLTVA------------FHGSVS---P-----ALAGLALTYASHVTGLLQFTVRVFVETELNF 396 (677)
Q Consensus 337 ~~~~l~~l~~l~~~l~~g~~lv------------~~G~ls---~-----g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~ 396 (677)
+...-+++.- -.+-|.+++ ..|+.. . ..+...=.........+..++...-++++-.
T Consensus 350 YiMleqF~mK---YvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLa 426 (728)
T KOG0064|consen 350 YIMLEQFVMK---YTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLA 426 (728)
T ss_pred HHHHHHHHHH---HhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4422222211 011111111 111110 0 1122222223334455666666667777777
Q ss_pred HHHHHHHHhhh---hcC---------CCCCCCCCCcccccccccc---CCCCCccEEEEeeeEEeCCCCCccccceeeEE
Q psy845 397 LAVERINNCSK---KLV---------PEGRGPITSEFGQVKVKLA---DWPRQGTIKFKNVSLRYRDNWPLVLANVSFRI 461 (677)
Q Consensus 397 ~s~eRI~eil~---~~~---------~e~~~~~~~~~~~~~~~~~---~~~~~g~I~fknVsFsY~~~~~~VLknISl~I 461 (677)
.-..|+.+.++ +.. +|..+...........+.+ ......+|.++||-.--|..+ .+.+++||+|
T Consensus 427 Gyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~-vvv~~Ltf~i 505 (728)
T KOG0064|consen 427 GYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD-VLVPKLTFQI 505 (728)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcc-eeecceeEEe
Confidence 77778775542 111 1100000000000000000 001234699999988777664 5899999999
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHH
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVA 541 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~ 541 (677)
++|-.+-|.||+|||||+|.+.|.|+|+..+|...+--
T Consensus 506 ~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~------------------------------------------ 543 (728)
T KOG0064|consen 506 EPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR------------------------------------------ 543 (728)
T ss_pred cCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC------------------------------------------
Confidence 99999999999999999999999999999888765421
Q ss_pred HHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC--------CCCChHHHHHHHHHccchhh
Q psy845 542 LFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF--------GRCHDTELWDALEKSHLKSK 613 (677)
Q Consensus 542 ~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~--------~~~sdeeI~~Al~~a~l~ef 613 (677)
+.+|-|+||.|+.=-||+||-|-+- +.++|+|+++.++.++++..
T Consensus 544 ---------------------------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i 596 (728)
T KOG0064|consen 544 ---------------------------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHI 596 (728)
T ss_pred ---------------------------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHH
Confidence 1135556666665556666665321 25789999999999999854
Q ss_pred HhhhhcccCCCC-CCCCCChHHHHHHHHHHHHhccchhhcccccc
Q psy845 614 VVTMRSKLDSDV-QGDQLSLGEKQLLCLARALLRKTKKKKKSGVN 657 (677)
Q Consensus 614 I~~LP~GldT~v-~G~~LSGGQRQRIaIARALLr~p~IL~~~~~T 657 (677)
.+-..|+|..- --.-||||+|||+++||.++++|+-..+..||
T Consensus 597 -~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 597 -LQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred -HHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 44466777765 34679999999999999999999855334443
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-22 Score=230.91 Aligned_cols=175 Identities=25% Similarity=0.327 Sum_probs=138.8
Q ss_pred ccEEEEeeeEEeCCC---CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC---CccEEEECCEecccccHH
Q psy845 435 GTIKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL---SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 435 g~I~fknVsFsY~~~---~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p---~~G~I~IdG~dI~~l~~~ 508 (677)
-+++++|++..-++. .+.+|+|||.+++|||..||.||||||||||++.|+|-.+. .+|+|++||+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~------ 97 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR------ 97 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC------
Confidence 468999999888665 36799999999999999999999999999999999999975 789999999543
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIR 587 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIr 587 (677)
+.+.+|+..|||+||..++ +.|++
T Consensus 98 -------------------------------------------------------~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 98 -------------------------------------------------------DSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred -------------------------------------------------------chhhhhheeEEEcccccccccccHH
Confidence 5567889999999999988 67999
Q ss_pred hccccC------CCCChH----HHHHHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 588 YNLDPF------GRCHDT----ELWDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 588 ENI~~~------~~~sde----eI~~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
|++.+. ++.+.+ .+++++++-++.+- -||.+ .+..+|||||+|++||--++.||+++
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflD 195 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLD 195 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCccccchhhHHHHHHHHHcCCCEEEec
Confidence 999532 222333 34555555555422 34555 34789999999999999999999987
Q ss_pred ---------------------cccccceeccc--------ccccEEEEEeCCeeC
Q psy845 652 ---------------------KKSGVNITRPV--------TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------------~~~~~TILsTI--------~~aDrIlVLd~GrIV 677 (677)
+.+||||.-|| +-.|++++|.+|+++
T Consensus 196 EPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v 250 (613)
T KOG0061|consen 196 EPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV 250 (613)
T ss_pred CCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE
Confidence 34688853333 348999999999874
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-22 Score=232.66 Aligned_cols=61 Identities=34% Similarity=0.531 Sum_probs=58.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
|+++|++++|++. .+|+|+||++++||++|||||||||||||+++|+|+++|++|+|.++|
T Consensus 4 l~i~~ls~~~~~~--~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 4 ISIHGAWLSFSDA--PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEeeEEEEeCCc--eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 7899999999753 699999999999999999999999999999999999999999999987
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=191.19 Aligned_cols=144 Identities=30% Similarity=0.421 Sum_probs=121.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
+.++||+.+-++. ..|.|+|++|.+||++-+.||||||||||+.-+.|..+++ +|++.+|++++..++
T Consensus 3 l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP------- 73 (213)
T COG4136 3 LCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP------- 73 (213)
T ss_pred eeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc-------
Confidence 5688999887764 6899999999999999999999999999999999999985 799999999987762
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
.-|+++|+.+||+.|| +-++.+||.+
T Consensus 74 -----------------------------------------------------a~qRq~GiLFQD~lLFphlsVg~Nl~f 100 (213)
T COG4136 74 -----------------------------------------------------AAQRQIGILFQDALLFPHLSVGQNLLF 100 (213)
T ss_pred -----------------------------------------------------hhhhheeeeecccccccccccccceEE
Confidence 3467888888888888 5699999953
Q ss_pred C------CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 593 F------GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 593 ~------~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
. +++......+|+++.+++++..+-| .+||||||-|+++-|+|+..|+.+
T Consensus 101 Alp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP---------~tlSGGQrARvaL~R~Lla~Pk~l 156 (213)
T COG4136 101 ALPATLKGNARRNAANAALERSGLDGAFHQDP---------ATLSGGQRARVALLRALLAQPKAL 156 (213)
T ss_pred ecCcccccHHHHhhHHHHHHHhccchhhhcCh---------hhcCcchHHHHHHHHHHHhCccee
Confidence 2 2334445677899999988876654 579999999999999999999966
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-23 Score=253.67 Aligned_cols=166 Identities=20% Similarity=0.213 Sum_probs=117.9
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhhhcccccCCccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~ 527 (677)
..+|+|+|++++|||.++|+||||||||||+|+|+|..+|+ +|+|.+||+++++.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~---------------------- 235 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF---------------------- 235 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh----------------------
Confidence 35999999999999999999999999999999999999998 99999999988654
Q ss_pred cccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCC-----------
Q psy845 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGR----------- 595 (677)
Q Consensus 528 ~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~----------- 595 (677)
. .|+.++||+|++.++ +.|++||+.+..+
T Consensus 236 ------------------------------------~---~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~ 276 (1470)
T PLN03140 236 ------------------------------------V---PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLL 276 (1470)
T ss_pred ------------------------------------c---ccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccch
Confidence 1 256677888877666 4688888854211
Q ss_pred --CChH----------HHH---HHHHHcc------chhhHhh--hhcccCCCC---CCCCCChHHHHHHHHHHHHhccch
Q psy845 596 --CHDT----------ELW---DALEKSH------LKSKVVT--MRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTK 649 (677)
Q Consensus 596 --~sde----------eI~---~Al~~a~------l~efI~~--LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~ 649 (677)
.+.+ ++. ++....+ .++.++. |.+-.||.+ ....||||||||++||||++.+|+
T Consensus 277 ~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~ 356 (1470)
T PLN03140 277 SELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356 (1470)
T ss_pred hhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCc
Confidence 0011 111 1110001 1122222 333456666 246899999999999999999998
Q ss_pred hh------------------------c-ccccce---ecc-----cccccEEEEEeCCeeC
Q psy845 650 KK------------------------K-KSGVNI---TRP-----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 650 IL------------------------~-~~~~TI---LsT-----I~~aDrIlVLd~GrIV 677 (677)
++ . ..++|+ ++. ..-||+|++|++|+++
T Consensus 357 vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred EEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 76 1 135673 222 2359999999999985
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-22 Score=195.20 Aligned_cols=128 Identities=24% Similarity=0.243 Sum_probs=93.8
Q ss_pred CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccc
Q psy845 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529 (677)
Q Consensus 450 ~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~ 529 (677)
.+++|+|+||++++||++||+||||||||||+++++ +++|++.++|.. ...
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~------------------------ 57 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF------------------------ 57 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc------------------------
Confidence 357999999999999999999999999999999996 379999988652 111
Q ss_pred cCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHcc
Q psy845 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSH 609 (677)
Q Consensus 530 ~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~ 609 (677)
-|+++++++| .++++..+
T Consensus 58 --------------------------------------~~~~~~~~~q------------------------~~~l~~~~ 75 (176)
T cd03238 58 --------------------------------------SRNKLIFIDQ------------------------LQFLIDVG 75 (176)
T ss_pred --------------------------------------ccccEEEEhH------------------------HHHHHHcC
Confidence 1234666666 23455555
Q ss_pred chhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhcc--chhh------------------------cccccce-----
Q psy845 610 LKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRK--TKKK------------------------KKSGVNI----- 658 (677)
Q Consensus 610 l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~--p~IL------------------------~~~~~TI----- 658 (677)
+.+. ..+. +..+||||||||++||||++++ |+++ ...++||
T Consensus 76 L~~~------~~~~--~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 76 LGYL------TLGQ--KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred CCcc------ccCC--CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4321 0111 5689999999999999999999 8865 1135663
Q ss_pred -ecccccccEEEEEeCCee
Q psy845 659 -TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 659 -LsTI~~aDrIlVLd~GrI 676 (677)
.+.++.||||++|++|+.
T Consensus 148 ~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 148 NLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHhCCEEEEECCCCC
Confidence 223567999999988753
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-22 Score=202.09 Aligned_cols=173 Identities=21% Similarity=0.424 Sum_probs=134.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.+++++|+.+|++. .|++|+||++++||+.|++|||||||||.+++|+|+.+|++|+|.++|.+++.- .+++||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhcc
Confidence 47899999999764 699999999999999999999999999999999999999999999999998654 677888
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG- 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~- 594 (677)
|.|++..||. ..|+.|-+.+++
T Consensus 76 yLPEERGLy~---------------------------------------------------------k~tv~dql~yla~ 98 (300)
T COG4152 76 YLPEERGLYP---------------------------------------------------------KMTVEDQLKYLAE 98 (300)
T ss_pred cChhhhccCc---------------------------------------------------------cCcHHHHHHHHHH
Confidence 8888888876 457777776654
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhc-ccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRS-KLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~-GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
.....|+.+ .+..|++++.- |+.+. +-..||-|..|+|.+--|++++|+++
T Consensus 99 LkGm~~~e~~~-----~~~~wLer~~i~~~~~~-kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~ 172 (300)
T COG4152 99 LKGMPKAEIQK-----KLQAWLERLEIVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDA 172 (300)
T ss_pred hcCCcHHHHHH-----HHHHHHHhccccccccc-hHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHH
Confidence 234444432 23345555432 12221 46789999999999999999999865
Q ss_pred ----cccccce-eccc--c----cccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI-TRPV--T----SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI-LsTI--~----~aDrIlVLd~GrIV 677 (677)
.-+|.|| .|+- + -||+++.|++|+.|
T Consensus 173 I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 173 IFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred HHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence 2357774 3332 1 39999999999864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-21 Score=225.27 Aligned_cols=196 Identities=16% Similarity=0.203 Sum_probs=121.4
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC---CCCccEEEECCEecccccHHHhh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV---ELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y---~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
..|+++|++++|++. .+|+|+||+|++||++|||||||||||||+++|+|.. .|.+|+|.+.++++..-
T Consensus 176 ~~I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~------ 247 (718)
T PLN03073 176 KDIHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGD------ 247 (718)
T ss_pred eeEEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCC------
Confidence 459999999999753 5999999999999999999999999999999999864 47888887654432110
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
+ +|.+..++ +.+ ......+++.+++++|++.+...+..+|..
T Consensus 248 -------------~----------~t~~~~v~-------------~~~--~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~ 289 (718)
T PLN03073 248 -------------D----------TTALQCVL-------------NTD--IERTQLLEEEAQLVAQQRELEFETETGKGK 289 (718)
T ss_pred -------------C----------CCHHHHHH-------------Hhh--HHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 0 00000000 000 001223566788899988765445555542
Q ss_pred cC--CCCCh----HHHHHHHHHccch------hhHhhhhc--ccCCC-C--CCCCCChHHHHHHHHHHHHhccchhhc--
Q psy845 592 PF--GRCHD----TELWDALEKSHLK------SKVVTMRS--KLDSD-V--QGDQLSLGEKQLLCLARALLRKTKKKK-- 652 (677)
Q Consensus 592 ~~--~~~sd----eeI~~Al~~a~l~------efI~~LP~--GldT~-v--~G~~LSGGQRQRIaIARALLr~p~IL~-- 652 (677)
.. ...+. +++.++++..++. +-+.+.-+ |++.. . .-.+||||||||++|||||+++|+++.
T Consensus 290 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLD 369 (718)
T PLN03073 290 GANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLD 369 (718)
T ss_pred cccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11 11111 2233333333221 11111111 22211 1 357899999999999999999999771
Q ss_pred -------------------ccccce---ecc---cc-cccEEEEEeCCee
Q psy845 653 -------------------KSGVNI---TRP---VT-SCDKVLVMDNGQA 676 (677)
Q Consensus 653 -------------------~~~~TI---LsT---I~-~aDrIlVLd~GrI 676 (677)
.-+.|+ .|. +. -||+|++|++|++
T Consensus 370 EPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~i 419 (718)
T PLN03073 370 EPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKL 419 (718)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 113452 222 22 3999999999997
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-21 Score=220.44 Aligned_cols=143 Identities=23% Similarity=0.359 Sum_probs=111.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccccccc-cchhhccccCCCC---ChHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLFN-GTIRYNLDPFGRC---HDTE 600 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LFs-gTIrENI~~~~~~---sdee 600 (677)
+.+|.||||||||+++|.|+++|++|+|+++|.++...+....+ +.++||+|++.++. .|++||+.+.... .+++
T Consensus 41 ~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 120 (510)
T PRK15439 41 ALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQK 120 (510)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHH
Confidence 56899999999999999999999999999999998877666554 57999999999886 5999999754221 2344
Q ss_pred HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------ccccc
Q psy845 601 LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGV 656 (677)
Q Consensus 601 I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~ 656 (677)
+.++++..++.+.. +. ...+||||||||++|||||+++|+++ ..+++
T Consensus 121 ~~~~l~~~~l~~~~-------~~--~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~ 191 (510)
T PRK15439 121 MKQLLAALGCQLDL-------DS--SAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191 (510)
T ss_pred HHHHHHHcCCCccc-------cC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 66677777664332 22 45789999999999999999999976 12356
Q ss_pred ce---ecc---c-ccccEEEEEeCCeeC
Q psy845 657 NI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 657 TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
|| .|. + .-||||++|++|+++
T Consensus 192 tiiivtHd~~~~~~~~d~i~~l~~G~i~ 219 (510)
T PRK15439 192 GIVFISHKLPEIRQLADRISVMRDGTIA 219 (510)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 63 332 2 349999999999974
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-21 Score=220.37 Aligned_cols=143 Identities=22% Similarity=0.324 Sum_probs=108.3
Q ss_pred cccccCCCCCchhHHHHHHhhhh--ccccccccccchhhhhHHH-Hhhhcccccccccccc-cchhhccccCCC------
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFN-GTIRYNLDPFGR------ 595 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~--~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFs-gTIrENI~~~~~------ 595 (677)
+.+|.||||||||+++|.|+++| ++|+|+++|.++...+..+ .|++++||+|++.+|. .|++||+.+...
T Consensus 35 ~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 114 (506)
T PRK13549 35 SLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGI 114 (506)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCC
Confidence 57899999999999999999996 8999999999997766543 5678999999999885 599999975321
Q ss_pred CCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 596 CHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 596 ~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
.+. +++.++++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 185 (506)
T PRK13549 115 MDYDAMYLRAQKLLAQLKLDINP-------AT--PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185 (506)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCc-------cc--chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 111 2344555555543221 22 45789999999999999999999976
Q ss_pred ----cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +-||||++|++|+++
T Consensus 186 l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 186 IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222 (506)
T ss_pred HHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe
Confidence 1235562 333 2 249999999999974
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-21 Score=195.38 Aligned_cols=149 Identities=26% Similarity=0.333 Sum_probs=111.5
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
.++|+||||++++||++||||++|||||||+|+|+|.|+|++|+|.++|.--.-+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li------------------------- 94 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLI------------------------- 94 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhh-------------------------
Confidence 4799999999999999999999999999999999999999999999999542111
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC---CCChHH----HHH
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG---RCHDTE----LWD 603 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~---~~sdee----I~~ 603 (677)
+++.| + --+.|-||||.+.+ ..+.+| ..+
T Consensus 95 ----------------~lg~G----------------------f------~pelTGreNi~l~~~~~G~~~~ei~~~~~e 130 (249)
T COG1134 95 ----------------ELGAG----------------------F------DPELTGRENIYLRGLILGLTRKEIDEKVDE 130 (249)
T ss_pred ----------------hcccC----------------------C------CcccchHHHHHHHHHHhCccHHHHHHHHHH
Confidence 12222 0 01458899995322 233444 445
Q ss_pred HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce-
Q psy845 604 ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI- 658 (677)
Q Consensus 604 Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI- 658 (677)
..+-+++.+|+ |.+ -.+.|.|.+-|+|.|=|.-.+|+|+ ..+++||
T Consensus 131 IieFaELG~fi-------~~P--vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv 201 (249)
T COG1134 131 IIEFAELGDFI-------DQP--VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201 (249)
T ss_pred HHHHHHHHHHh-------hCc--hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 56667777775 344 3689999999999999999999987 1245563
Q ss_pred -----ecccc-cccEEEEEeCCeeC
Q psy845 659 -----TRPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 659 -----LsTI~-~aDrIlVLd~GrIV 677 (677)
...++ .|||+++|++|++.
T Consensus 202 ~VSHd~~~I~~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 202 LVSHDLGAIKQYCDRAIWLEHGQIR 226 (249)
T ss_pred EEECCHHHHHHhcCeeEEEeCCEEE
Confidence 23343 49999999999973
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-21 Score=191.22 Aligned_cols=177 Identities=26% Similarity=0.333 Sum_probs=128.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHH-hhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELET-LRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~-~~~ 512 (677)
-++++|++.+-.++ +++||++|++|++||+.||.||||||||||.+.|+|. |++++|+|.+||+||.++++++ .|.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 37889999887653 4699999999999999999999999999999999998 6899999999999999996543 355
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
-+.+-+|.|.=++|. |+++-++.
T Consensus 82 GifLafQ~P~ei~GV---------------------------------------------------------~~~~fLr~ 104 (251)
T COG0396 82 GIFLAFQYPVEIPGV---------------------------------------------------------TNSDFLRA 104 (251)
T ss_pred CCEEeecCCccCCCe---------------------------------------------------------eHHHHHHH
Confidence 555555555544432 33333321
Q ss_pred C------C----CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 593 F------G----RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 593 ~------~----~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
. . ....+++.++++..++++.. ++-.+ ...+|||||.|.-|+.+++-+|+..
T Consensus 105 a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~v-N~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDI 177 (251)
T COG0396 105 AMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYV-NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177 (251)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhccc-CCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccH
Confidence 0 0 12246678888888887622 11122 3579999999999999999999854
Q ss_pred -------------cccccc---eecc---c--ccccEEEEEeCCeeC
Q psy845 652 -------------KKSGVN---ITRP---V--TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~T---ILsT---I--~~aDrIlVLd~GrIV 677 (677)
.-.++. |+|. . -..|++.||-+||||
T Consensus 178 dalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv 224 (251)
T COG0396 178 DALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224 (251)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE
Confidence 112333 2221 1 136999999999986
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-21 Score=219.27 Aligned_cols=144 Identities=26% Similarity=0.368 Sum_probs=109.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh-HHHHhhhcccccccccccc-cchhhccccCC-----C-C
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPVLFN-GTIRYNLDPFG-----R-C 596 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~-----~-~ 596 (677)
-+.+|.||||||||+++|.|+++|++|+|+++|.++...+ .+.+|++++||+|++.+|. .|++||+.+.. . .
T Consensus 33 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 112 (501)
T PRK11288 33 HALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIV 112 (501)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCC
Confidence 3678999999999999999999999999999999986543 4467889999999999986 59999997531 1 1
Q ss_pred C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 597 H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 597 s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
. ++++.++++..++.+. .+. ...+||||||||++||||++++|+++
T Consensus 113 ~~~~~~~~~~~~l~~~~l~~~-------~~~--~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (501)
T PRK11288 113 NRRLLNYEAREQLEHLGVDID-------PDT--PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183 (501)
T ss_pred CHHHHHHHHHHHHHHcCCCCC-------cCC--chhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 1 1234455555554321 122 45789999999999999999999976
Q ss_pred ---cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+++|| .|.. ..||||++|++|+++
T Consensus 184 ~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 184 RELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 3332 349999999999974
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-21 Score=218.84 Aligned_cols=143 Identities=26% Similarity=0.319 Sum_probs=107.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhcccccccccccc-cchhhccccCCC-------C
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFN-GTIRYNLDPFGR-------C 596 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFs-gTIrENI~~~~~-------~ 596 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.++...+... .|++++||+|++.+|. .|++||+.++.. .
T Consensus 34 ~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 113 (501)
T PRK10762 34 ALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRI 113 (501)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCcc
Confidence 678999999999999999999999999999999986654433 4678999999998885 599999975321 1
Q ss_pred Ch----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 597 HD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 597 sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
+. +++.++++..++.+.. |. ...+||||||||++||||++++|+++
T Consensus 114 ~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 184 (501)
T PRK10762 114 DWKKMYAEADKLLARLNLRFSS-------DK--LVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI 184 (501)
T ss_pred CHHHHHHHHHHHHHHcCCCCCc-------cC--chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 11 2344455555553321 22 35689999999999999999999976
Q ss_pred ---cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...++|| .|. + +-||||++|++|+++
T Consensus 185 ~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 185 RELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 1234563 332 2 349999999999974
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-21 Score=217.73 Aligned_cols=144 Identities=23% Similarity=0.361 Sum_probs=107.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh-HHHHhhhccccccccccc-ccchhhccccCC----C--C
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPVLF-NGTIRYNLDPFG----R--C 596 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~----~--~ 596 (677)
-+.+|.||||||||+++|.|+.+|++|+|.++|.++...+ .+.+|++++||+|++.++ +.|++||+.+.. . .
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (491)
T PRK10982 27 HALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFV 106 (491)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccccc
Confidence 3678999999999999999999999999999999987553 345678899999999887 469999997531 1 1
Q ss_pred ChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 597 HDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 597 sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
+.+ ++.++++..++.+. .+. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~-------~~~--~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 177 (491)
T PRK10982 107 DQDKMYRDTKAIFDELDIDID-------PRA--KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTII 177 (491)
T ss_pred CHHHHHHHHHHHHHHcCCCCC-------ccC--chhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 222 23334444443221 111 46799999999999999999999976
Q ss_pred ---cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...++|+ .|. + ..||||++|++|+++
T Consensus 178 ~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~ 213 (491)
T PRK10982 178 RKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213 (491)
T ss_pred HHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1235562 333 2 349999999999974
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-21 Score=219.32 Aligned_cols=143 Identities=27% Similarity=0.395 Sum_probs=108.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhcccccccccccc-cchhhccccCCC-------C
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFN-GTIRYNLDPFGR-------C 596 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFs-gTIrENI~~~~~-------~ 596 (677)
+.+|.||||||||+++|.|+.+|++|+|+++|.++...+... .|++++||+|++.+|. .|++||+.+... .
T Consensus 35 ~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 114 (510)
T PRK09700 35 ALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGV 114 (510)
T ss_pred EEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccc
Confidence 578999999999999999999999999999999998776554 4567999999999886 599999974311 0
Q ss_pred ---C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 597 ---H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 597 ---s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
+ ++++.++++..++.+. .+. ...+||||||||++||||++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~l~~~gl~~~-------~~~--~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~ 185 (510)
T PRK09700 115 NIIDWREMRVRAAMMLLRVGLKVD-------LDE--KVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF 185 (510)
T ss_pred cccCHHHHHHHHHHHHHHcCCCCC-------ccc--chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 1 1234455555555332 222 35689999999999999999999976
Q ss_pred ------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + .-||||++|++|+++
T Consensus 186 ~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 186 LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 1235663 333 2 249999999999974
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-21 Score=214.51 Aligned_cols=143 Identities=20% Similarity=0.121 Sum_probs=111.6
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc---------cccchhhccccCCC
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL---------FNGTIRYNLDPFGR 595 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L---------FsgTIrENI~~~~~ 595 (677)
-+.+|+||||||||+++|.|+.+|++|+|.++|.++...+..++|+.+++++|++.+ +..|++||+... .
T Consensus 32 ~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~ 110 (490)
T PRK10938 32 WAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-V 110 (490)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-h
Confidence 367899999999999999999999999999999888766667788899999998753 246889988642 1
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------ 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------ 651 (677)
..++++.++++..++.+.... ...+||||||||++||||++++|+++
T Consensus 111 ~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 111 KDPARCEQLAQQFGITALLDR---------RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred hHHHHHHHHHHHcCCHhhhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 224556777887777544322 45789999999999999999999976
Q ss_pred cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+++|| .|.+ +-||+|++|++|+++
T Consensus 182 ~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 182 HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA 214 (490)
T ss_pred HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 1235662 3333 238999999999974
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=211.09 Aligned_cols=62 Identities=47% Similarity=0.697 Sum_probs=57.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
.|+++|++++|+++ ++++|+|+++.+|+++||||+||||||||+++|+|..+|++|+|..++
T Consensus 3 ~i~~~~ls~~~g~~--~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred eEEEeeeEEeeCCc--eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 47899999999654 699999999999999999999999999999999999999999998865
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-20 Score=187.13 Aligned_cols=148 Identities=25% Similarity=0.334 Sum_probs=121.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC-EecccccHHHhhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD-FDIASVELETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG-~dI~~l~~~~~~~~i 514 (677)
-++++||+.++++- .+|+|+||++.+||.-+|+||+||||||++..++|--+|+.|+++++| .|++.++
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~-------- 74 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP-------- 74 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC--------
Confidence 47889999999764 599999999999999999999999999999999999999999999999 8998883
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
..+--|..||==+|.|..| +.|++||+...
T Consensus 75 -------------------------------------------------e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA 105 (249)
T COG4674 75 -------------------------------------------------EHRIARAGIGRKFQKPTVFENLTVRENLELA 105 (249)
T ss_pred -------------------------------------------------HHHHHHhccCccccCCeehhhccHHHHHHHH
Confidence 3444566777778888888 56999998421
Q ss_pred ------------CCCC-h--HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 594 ------------GRCH-D--TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 594 ------------~~~s-d--eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.+.+ + +++.+++...++.+.... ....||.||||++-|+--+.++|+.+
T Consensus 106 ~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~---------~A~~LSHGqKQwLEIGMll~Q~P~lL 169 (249)
T COG4674 106 LNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR---------LAALLSHGQKQWLEIGMLLAQDPKLL 169 (249)
T ss_pred hcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh---------hhhhhccchhhhhhhheeeccCCcEE
Confidence 1112 2 247778887777654332 46799999999999999999999987
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-21 Score=212.94 Aligned_cols=145 Identities=23% Similarity=0.313 Sum_probs=107.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhh--ccccccccccchhhhhHHH-Hhhhcccccccccccc-cchhhccccCCC-----
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFN-GTIRYNLDPFGR----- 595 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~--~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFs-gTIrENI~~~~~----- 595 (677)
-+.+|.||||||||+++|.|+.+| ++|+|.++|.+++..+... .|++++||||++.+|. .|++||+.+...
T Consensus 30 ~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 109 (500)
T TIGR02633 30 VGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG 109 (500)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccc
Confidence 367899999999999999999997 7999999999987765443 4678999999998885 599999964321
Q ss_pred --CCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 596 --CHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 596 --~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
... +++.++++..++.+... +. ...+||||||||++||||++++|+++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~------~~--~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~ 181 (500)
T TIGR02633 110 GRMAYNAMYLRAKNLLRELQLDADNV------TR--PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILL 181 (500)
T ss_pred cccCHHHHHHHHHHHHHHcCCCCCcc------cC--chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 111 22444555554432110 11 35689999999999999999999976
Q ss_pred ------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +-||||++|++|+++
T Consensus 182 ~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 182 DIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred HHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence 1235563 332 2 249999999999974
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-20 Score=192.57 Aligned_cols=160 Identities=28% Similarity=0.392 Sum_probs=107.5
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n 531 (677)
++.+|+||+|+|||+++++|||||||||.+|+|.|...|++|.|.++|.+.-+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~--------------------------- 90 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR--------------------------- 90 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch---------------------------
Confidence 58999999999999999999999999999999999999999999999988644
Q ss_pred CCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccc-ccccccc-ccchhhccccC---CCCChHHHHHHHH
Q psy845 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI-PQDPVLF-NGTIRYNLDPF---GRCHDTELWDALE 606 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V-~Qd~~LF-sgTIrENI~~~---~~~sdeeI~~Al~ 606 (677)
+.++.-+++++| .|...|. +.-+.|-+... .++.|++..+-++
T Consensus 91 --------------------------------~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~ 138 (325)
T COG4586 91 --------------------------------RREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLD 138 (325)
T ss_pred --------------------------------hHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHH
Confidence 222222333333 2443332 22233322111 1233333322111
Q ss_pred HccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-------------------------cccccce-
Q psy845 607 KSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------------KKSGVNI- 658 (677)
Q Consensus 607 ~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------------~~~~~TI- 658 (677)
++++= -+++..+ +-..||-|||-|.-||-||+++|+++ ...+.||
T Consensus 139 -----~l~ei--Ldl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVl 211 (325)
T COG4586 139 -----FLTEI--LDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211 (325)
T ss_pred -----HHHHH--hcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEE
Confidence 11111 1333334 56799999999999999999999987 1345565
Q ss_pred -eccc-----ccccEEEEEeCCeeC
Q psy845 659 -TRPV-----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 -LsTI-----~~aDrIlVLd~GrIV 677 (677)
.+++ +-||||+.+++||++
T Consensus 212 lTTH~~~di~~lc~rv~~I~~Gqlv 236 (325)
T COG4586 212 LTTHIFDDIATLCDRVLLIDQGQLV 236 (325)
T ss_pred EEecchhhHHHhhhheEEeeCCcEe
Confidence 2222 349999999999985
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-20 Score=181.17 Aligned_cols=144 Identities=27% Similarity=0.352 Sum_probs=115.0
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+.+|++-.- ++...+.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|+++|.++.+.
T Consensus 4 ~a~~L~~~R--~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~------------ 69 (209)
T COG4133 4 EAENLSCER--GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV------------ 69 (209)
T ss_pred hhhhhhhcc--CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc------------
Confidence 345555433 334689999999999999999999999999999999999999999999999988775
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC--
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG-- 594 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~-- 594 (677)
.++.++.+-|+.-.+-+ -..|+.||+.+..
T Consensus 70 -----------------------------------------------~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~ 102 (209)
T COG4133 70 -----------------------------------------------RESYHQALLYLGHQPGIKTELTALENLHFWQRF 102 (209)
T ss_pred -----------------------------------------------hhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 33345566666544444 3679999997543
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..+++.+++|++.+++..+. |. .-.+||.||+.|+||||-++..+|+-
T Consensus 103 ~~~~~~~~i~~Al~~vgL~g~~-------dl--p~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 103 HGSGNAATIWEALAQVGLAGLE-------DL--PVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred hCCCchhhHHHHHHHcCccccc-------cc--chhhcchhHHHHHHHHHHHcCCCCce
Confidence 35678899999999998753 22 35699999999999999999988854
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-20 Score=208.93 Aligned_cols=172 Identities=30% Similarity=0.407 Sum_probs=129.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++ ..+|+|+||++++||++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~------------------------------------------------- 29 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVL------------------------------------------------- 29 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEE-------------------------------------------------
Confidence 478999999964 36999999999999844
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhh--hhcccccccc-----------------------ccchh-------h--
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLV--ELSSGQIKID-----------------------DFDIA-------S-- 562 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~--~~~~g~i~~~-----------------------~~~~~-------~-- 562 (677)
+.+|.||||||||+++|.|+. +|++|+|+++ |.++. .
T Consensus 30 ---------~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 100 (520)
T TIGR03269 30 ---------GILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLS 100 (520)
T ss_pred ---------EEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccC
Confidence 568999999999999999996 7999999997 22221 1
Q ss_pred -hhHHHHhhhccccccc-ccccc-cchhhccccC---CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCCh
Q psy845 563 -VELETLRSRLSVIPQD-PVLFN-GTIRYNLDPF---GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632 (677)
Q Consensus 563 -~~~~~LR~~I~~V~Qd-~~LFs-gTIrENI~~~---~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSG 632 (677)
.....+|+.++||+|+ +.+|+ .|++||+.+. ...+ ++++.++++..++.+...+ ...+|||
T Consensus 101 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSg 171 (520)
T TIGR03269 101 DKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH---------IARDLSG 171 (520)
T ss_pred HHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc---------CcccCCH
Confidence 1234578899999998 67775 6999999642 1122 2345667777776544322 3578999
Q ss_pred HHHHHHHHHHHHhccchhh------------------------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 633 GEKQLLCLARALLRKTKKK------------------------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 633 GQRQRIaIARALLr~p~IL------------------------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
|||||++||||++++|+++ .. .++|| .|. + +-||||++|++|+++
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~ 248 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK 248 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe
Confidence 9999999999999999976 11 25663 332 3 249999999999974
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-20 Score=208.88 Aligned_cols=147 Identities=27% Similarity=0.413 Sum_probs=108.0
Q ss_pred ccccccCCCCCchhHHHHHHhhhh-----ccccccccccchhhhhHH---HHh-hhccccccccc--cc-ccchhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE---TLR-SRLSVIPQDPV--LF-NGTIRYNLDP 592 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~-----~~g~i~~~~~~~~~~~~~---~LR-~~I~~V~Qd~~--LF-sgTIrENI~~ 592 (677)
-+.+|+||||||||+++|.|+++| ++|+|+++|.++...+.. .+| ++++||+|++. ++ ..|++||+..
T Consensus 38 ~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~ 117 (529)
T PRK15134 38 LALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE 117 (529)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHH
Confidence 367899999999999999999987 799999999998765443 344 58999999985 44 3589999852
Q ss_pred C----CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 593 F----GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 593 ~----~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
. ...+ .+++.++++..++.+.... .+. ...+||||||||++||||++.+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~--~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~ 191 (529)
T PRK15134 118 VLSLHRGMRREAARGEILNCLDRVGIRQAAKR----LTD--YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSV 191 (529)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----Hhh--CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHH
Confidence 1 1111 2446677888777542111 111 45799999999999999999999976
Q ss_pred ---------c--c-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------K--K-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~--~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. . .++|| .|. + ..||||++|++|+++
T Consensus 192 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 192 QAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 1 1 25663 333 2 249999999999974
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-19 Score=181.49 Aligned_cols=32 Identities=38% Similarity=0.437 Sum_probs=30.1
Q ss_pred CCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 450 ~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
..++|+|+||++++||++||+||||||||||+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 34699999999999999999999999999996
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-15 Score=145.01 Aligned_cols=203 Identities=22% Similarity=0.300 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccc-c-ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy845 178 RSVYLRSVFQNMWSMLFAFLMICFVFPWFA-L-PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPW 252 (677)
Q Consensus 178 ~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~-~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~ 252 (677)
..+..+++.+++..++|+|.+.... .||+ . ++ .++++|.+.+++.+. ..+..++.++..+++.++.++..+|+
T Consensus 65 ~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~g~l~~~i~~d~~~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~ 142 (275)
T PF00664_consen 65 SSRISQRIRKDLRKRLFEKLLRLPY-SYFDKNSSGELLSRITNDIEQIENFLS-SSLFQIISSIISIIFSLILLFFISWK 142 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHH-HHHHHS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhccccccccccccccccccccc-ccccccccccchhhhhhhcccccccc
Confidence 4556667777788899999999754 8884 3 33 666777777777654 45667888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 253 FALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSM 332 (677)
Q Consensus 253 lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 332 (677)
+++++++..++...+...+.++.++..+..++..++..+.++|.++|+++||+|+.|+++.+++++..++..+...+...
T Consensus 143 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 222 (275)
T PF00664_consen 143 LALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAK 222 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988899999999999999988888888889999999999999999999999999999999999988777766665
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHH
Q psy845 333 AMRWLAVRIDVLAVI--AMAIITGLTV-AFHGSVSPALAGLALTYASHVTGLL 382 (677)
Q Consensus 333 ~~~~~~~~l~~l~~l--~~~l~~g~~l-v~~G~ls~g~l~~~l~~~~~l~~~l 382 (677)
...+.....+.+..+ +.++.+|.++ +.+|.+++|.+.+++.+...+.+|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 223 IQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 555555555544443 3345566667 8899999999999999988887774
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-18 Score=168.14 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=57.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
-++++++|..|.+. .--+|+||++.|||..||||+||||||||+++|.+-..|+.|+|.++.
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~ 67 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRM 67 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEc
Confidence 47889999999865 478999999999999999999999999999999999999999999854
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=186.26 Aligned_cols=140 Identities=31% Similarity=0.382 Sum_probs=109.2
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
+.-++++|++++|+++ +++++|+||.|++|++||||||+|+|||||+|+|+|-..|.+|+|.++-. +
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----v-------- 385 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----V-------- 385 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----e--------
Confidence 3468999999999765 57999999999999999999999999999999999999999999987632 1
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-ccc-ccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLF-NGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~LF-sgTIrENI~ 591 (677)
++||.+|+. .++ +.|+-|++.
T Consensus 386 ---------------------------------------------------------~igyf~Q~~~~l~~~~t~~d~l~ 408 (530)
T COG0488 386 ---------------------------------------------------------KIGYFDQHRDELDPDKTVLEELS 408 (530)
T ss_pred ---------------------------------------------------------EEEEEEehhhhcCccCcHHHHHH
Confidence 344444444 222 347788885
Q ss_pred cCC-CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 592 PFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 592 ~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
... +..+.++...+...+....-. .+ ....||||||-|+.+|+.++.+|.+|
T Consensus 409 ~~~~~~~e~~~r~~L~~f~F~~~~~------~~--~v~~LSGGEk~Rl~La~ll~~~pNvL 461 (530)
T COG0488 409 EGFPDGDEQEVRAYLGRFGFTGEDQ------EK--PVGVLSGGEKARLLLAKLLLQPPNLL 461 (530)
T ss_pred hhCccccHHHHHHHHHHcCCChHHH------hC--chhhcCHhHHHHHHHHHHhccCCCEE
Confidence 332 333677888888877653221 12 45789999999999999999999987
|
|
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-18 Score=205.85 Aligned_cols=175 Identities=26% Similarity=0.323 Sum_probs=139.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..+..+|++..|+.... +.+++|+.+++||..|+-|+|||||||+++++.|...|++|++.++|.|++.-.
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~-------- 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVST-------- 633 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCcccccc--------
Confidence 46889999999987644 999999999999999999999999999999999999999999999999987641
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+..+.|+++||.||+..|+ ..|.||.+.+.
T Consensus 634 -------------------------------------------------~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ 664 (885)
T KOG0059|consen 634 -------------------------------------------------DFQQVRKQLGYCPQFDALWEELTGREHLEFY 664 (885)
T ss_pred -------------------------------------------------chhhhhhhcccCCchhhhhhhccHHHHHHHH
Confidence 4556888999999998888 46999999643
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc--------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK-------------- 652 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~-------------- 652 (677)
+ ... ++.+.+.++..++.+.... ...++|||+|.|+++|-|++.+|+++.
T Consensus 665 arlrG~~~~di~~~v~~ll~~~~L~~~~~~---------~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr 735 (885)
T KOG0059|consen 665 ARLRGLPRSDIGSAIEKLLRLVGLGPYANK---------QVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARR 735 (885)
T ss_pred HHHcCCChhHHHHHHHHHHHHcCChhhhcc---------chhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 2 222 2336667777777655432 357999999999999999999998651
Q ss_pred ----------ccccc-e-ecc-cc----cccEEEEEeCCee
Q psy845 653 ----------KSGVN-I-TRP-VT----SCDKVLVMDNGQA 676 (677)
Q Consensus 653 ----------~~~~T-I-LsT-I~----~aDrIlVLd~GrI 676 (677)
..++- | +++ .. -|||+..|.+|++
T Consensus 736 ~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l 776 (885)
T KOG0059|consen 736 HLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQL 776 (885)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCee
Confidence 12223 3 222 22 2999999999996
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-18 Score=177.69 Aligned_cols=195 Identities=20% Similarity=0.161 Sum_probs=112.7
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh-----c-CC----CCCccEEEECCEecccccHHHhhhhcccccCCc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALF-----R-LV----ELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~-----r-~y----~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
..|||+|++|+.|+.++|.|+||||||||++.++ + +. .|..++...+...+.+ +-+|.|.|
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------~~~vdq~p 79 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDK---------VIVIDQSP 79 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCc---------eEEecCCc
Confidence 4799999999999999999999999999998663 2 22 2444444433333322 34555554
Q ss_pred cccccccccCCCCCchhHHHHHHhhhh-ccc-cccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCCC-C
Q psy845 522 VLFNGIVGRTGAGKSSLLVALFRLVEL-SSG-QIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGRC-H 597 (677)
Q Consensus 522 ~lf~~~~~~n~~~~~~~~~~~~~~~~~-~~g-~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~~-s 597 (677)
.= +| -.||. .--.++.+. -.= -=.-.|.+++.+. -.+.|..++.... +.|+.||+.++... .
T Consensus 80 i~------~~--~rs~~-~ty~~~~~~ir~~fC~~C~G~r~~~~~-----l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~ 145 (261)
T cd03271 80 IG------RT--PRSNP-ATYTGVFDEIRELFCEVCKGKRYNRET-----LEVRYKGKSIADVLDMTVEEALEFFENIPK 145 (261)
T ss_pred CC------CC--CCCcH-HHHHHHHHHHHHhcCccccccccCHHH-----HhcCcCCCCHHHHhcCCHHHHHHHHHhhhh
Confidence 21 11 11111 111111110 000 0000111222111 1345555555443 67899998765432 2
Q ss_pred hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhcc---chhh-----------------------
Q psy845 598 DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRK---TKKK----------------------- 651 (677)
Q Consensus 598 deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~---p~IL----------------------- 651 (677)
.++..++++..++.... ++. ...+||||||||++||||+.++ |+++
T Consensus 146 ~~~~~~~L~~vgL~~l~------l~~--~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~ 217 (261)
T cd03271 146 IARKLQTLCDVGLGYIK------LGQ--PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR 217 (261)
T ss_pred HHHHHHHHHHcCCchhh------hcC--ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 24455666666664321 111 4679999999999999999997 4544
Q ss_pred -cccccce------ecccccccEEEEE------eCCeeC
Q psy845 652 -KKSGVNI------TRPVTSCDKVLVM------DNGQAL 677 (677)
Q Consensus 652 -~~~~~TI------LsTI~~aDrIlVL------d~GrIV 677 (677)
...+.|+ +..++.||+|++| ++|+|+
T Consensus 218 l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~g~~~G~iv 256 (261)
T cd03271 218 LVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVV 256 (261)
T ss_pred HHhCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEE
Confidence 1135662 2345679999999 899874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=169.57 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=95.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc--------EEEECCEecccccH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG--------QIKIDDFDIASVEL 507 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G--------~I~IdG~dI~~l~~ 507 (677)
.|+++|. .+|++. .++++++ |+.++|+||||||||||+++|+++..+..| .+..+|....
T Consensus 3 ~i~~~nf-ksy~~~--~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~---- 70 (243)
T cd03272 3 QVIIQGF-KSYKDQ--TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPS---- 70 (243)
T ss_pred EEEEeCc-cCcccC--cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCC----
Confidence 3666664 246543 4788876 899999999999999999999966433333 2222332211
Q ss_pred HHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchh
Q psy845 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR 587 (677)
Q Consensus 508 ~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIr 587 (677)
..+..+.+++|++.-.. ... .+...+++.++++||++.++.
T Consensus 71 -~~~~~v~i~~~~~~~~~---------------------------------~~~-~~~~~i~r~ig~~~~~~~l~~---- 111 (243)
T cd03272 71 -VMSAYVEIIFDNSDNRF---------------------------------PID-KEEVRLRRTIGLKKDEYFLDK---- 111 (243)
T ss_pred -CceEEEEEEEEcCCCcc---------------------------------CCC-CCEEEEEEEEECCCCEEEECC----
Confidence 12334444444421100 000 012246778899998876653
Q ss_pred hccccCCCCChHHHHHHHHHccchhhHh--hhhccc-------CCCC--CCCCCChHHHHHHHHHHHHh----ccchhh
Q psy845 588 YNLDPFGRCHDTELWDALEKSHLKSKVV--TMRSKL-------DSDV--QGDQLSLGEKQLLCLARALL----RKTKKK 651 (677)
Q Consensus 588 ENI~~~~~~sdeeI~~Al~~a~l~efI~--~LP~Gl-------dT~v--~G~~LSGGQRQRIaIARALL----r~p~IL 651 (677)
...+.+|+.++++..++...-. ..|+|. +... .+.+||||||||++||||++ ++|+++
T Consensus 112 ------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~il 184 (243)
T cd03272 112 ------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFY 184 (243)
T ss_pred ------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 2346677888888877653210 012221 1111 57899999999999999996 356655
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-17 Score=183.28 Aligned_cols=182 Identities=26% Similarity=0.347 Sum_probs=129.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc-HHHhhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~-~~~~~~~i 514 (677)
.++++|++.. ..++|+||++++||++||.|--|||+|-++++|.|..++.+|+|.+||.+++--+ .++++..+
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 4667777642 2589999999999999999999999999999999999999999999999886554 34667777
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+|||+| |+.=|.++ +.+|++|+....
T Consensus 337 ~~v~ED------------------------------------------------Rk~~Gl~l------~~sI~~Ni~l~~ 362 (500)
T COG1129 337 AYVPED------------------------------------------------RKSEGLVL------DMSIAENITLAS 362 (500)
T ss_pred EeCCcc------------------------------------------------cccCcCcC------CCcHHHheehHh
Confidence 777766 22223332 457888885421
Q ss_pred --CCChH-HHHHHHHHccchhhHhhhhcccCCCC-CCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 595 --RCHDT-ELWDALEKSHLKSKVVTMRSKLDSDV-QGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 595 --~~sde-eI~~Al~~a~l~efI~~LP~GldT~v-~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
..+.. -+.+..+..-..+++.+|.-.-...- .-.+||||.+|++.|||.|..+|+++
T Consensus 363 l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~ 442 (500)
T COG1129 363 LRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR 442 (500)
T ss_pred hhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHH
Confidence 11100 23334444455566666543222211 46799999999999999999999987
Q ss_pred -----cccccce---ec----ccccccEEEEEeCCeeC
Q psy845 652 -----KKSGVNI---TR----PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~~~~TI---Ls----TI~~aDrIlVLd~GrIV 677 (677)
+.+|+.| .| .+..||||+||.+|+++
T Consensus 443 li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 443 LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480 (500)
T ss_pred HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEE
Confidence 2345552 22 24469999999999985
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.2e-18 Score=188.44 Aligned_cols=145 Identities=34% Similarity=0.443 Sum_probs=108.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhc----cccccccccchhhhhHHHHh----hhcccccccccc-cc--cchhhccc---
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELS----SGQIKIDDFDIASVELETLR----SRLSVIPQDPVL-FN--GTIRYNLD--- 591 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~----~g~i~~~~~~~~~~~~~~LR----~~I~~V~Qd~~L-Fs--gTIrENI~--- 591 (677)
|+||++||||||++.+|+|+.+++ +|+|.++|.|+-.++.+..| +.|++|+|||.= +| -||.+-|+
T Consensus 39 gIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~ 118 (539)
T COG1123 39 GIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREAL 118 (539)
T ss_pred EEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHH
Confidence 789999999999999999999998 89999999999888776654 589999999753 44 36665552
Q ss_pred -cCCCC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc--------------
Q psy845 592 -PFGRC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK-------------- 652 (677)
Q Consensus 592 -~~~~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~-------------- 652 (677)
..... ..++..+.++++++.+-... .-...+||||||||+.||+||..||+++.
T Consensus 119 ~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-------~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~ 191 (539)
T COG1123 119 RLHGKGSRAEARKRAVELLEQVGLPDPERR-------DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191 (539)
T ss_pred HHhccccHHHHHHHHHHHHHHcCCCChhhh-------ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHH
Confidence 22222 23446667888887654433 11467999999999999999999999771
Q ss_pred -----------ccccc---eecc---c-ccccEEEEEeCCeeC
Q psy845 653 -----------KSGVN---ITRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 -----------~~~~T---ILsT---I-~~aDrIlVLd~GrIV 677 (677)
..|.+ |.|. + +-||||+||++|++|
T Consensus 192 qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 192 QILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred HHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 12222 1222 2 349999999999986
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-17 Score=167.10 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=81.4
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCC
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAG 534 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~ 534 (677)
+++++++++| .++|+||||||||||+++|.++..|..|.. +++.+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~-~~~~~--------------------------------- 58 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKS-LRGEK--------------------------------- 58 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchh-hcccC---------------------------------
Confidence 5679999999 999999999999999999999987764431 12211
Q ss_pred CchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhH
Q psy845 535 KSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKV 614 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI 614 (677)
.|++..+|.+... ...++++++|+|++..+-+ ....+++.++++.
T Consensus 59 ---------------~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~~~----------~~~~~~~~~~l~~------- 103 (197)
T cd03278 59 ---------------MSDVIFAGSETRK---PANFAEVTLTFDNSDGRYS----------IISQGDVSEIIEA------- 103 (197)
T ss_pred ---------------HHHHhccCCCCCC---CCceEEEEEEEEcCCCcee----------EEehhhHHHHHhC-------
Confidence 2233333333321 1235789999999987711 1123455555555
Q ss_pred hhhhcccCCCCCCCCCChHHHHHHHHHHHHh----ccchhh
Q psy845 615 VTMRSKLDSDVQGDQLSLGEKQLLCLARALL----RKTKKK 651 (677)
Q Consensus 615 ~~LP~GldT~v~G~~LSGGQRQRIaIARALL----r~p~IL 651 (677)
++..+. ...+||||||||++||||+. ++|+++
T Consensus 104 ---~~~~~~--~~~~LS~G~kqrl~la~~l~~~~~~~~~il 139 (197)
T cd03278 104 ---PGKKVQ--RLSLLSGGEKALTALALLFAIFRVRPSPFC 139 (197)
T ss_pred ---CCcccc--chhhcCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 111222 45689999999999999986 455654
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-17 Score=160.77 Aligned_cols=62 Identities=35% Similarity=0.499 Sum_probs=54.4
Q ss_pred EEEEeeeEEeC----CC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC
Q psy845 437 IKFKNVSLRYR----DN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498 (677)
Q Consensus 437 I~fknVsFsY~----~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id 498 (677)
+.++||+.++. ++ .-+|++|+||+++.||++.+=|||||||||+++.|-+=|.|++|+|.+.
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~ 71 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVR 71 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEE
Confidence 66778876662 22 3479999999999999999999999999999999999999999999984
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-17 Score=164.43 Aligned_cols=134 Identities=20% Similarity=0.128 Sum_probs=84.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEe-CCcEEEEEcCCCCChHHHHHHHh-cCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRIN-HGENIGIVGRTGAGKSSLLVALF-RLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~-~GE~VAIVGpSGSGKSTLi~LL~-r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
.|+++|+. +|.+. ++++|+.. +||.++|+|||||||||++++|. .+|.+..+....+ .....+
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~-------- 69 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVF-------- 69 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHh--------
Confidence 58899998 77643 45667654 59999999999999999999999 4666665555443 111111
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
.....+..+++++|++ +....+.+..
T Consensus 70 --------------------------------------------------~~~~~~~~v~~~f~~~----~~~~~~~r~~ 95 (213)
T cd03279 70 --------------------------------------------------APGEDTAEVSFTFQLG----GKKYRVERSR 95 (213)
T ss_pred --------------------------------------------------cCCCccEEEEEEEEEC----CeEEEEEEec
Confidence 1122345677777776 3333344332
Q ss_pred CCCChHHHHHH--HHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccc
Q psy845 594 GRCHDTELWDA--LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKT 648 (677)
Q Consensus 594 ~~~sdeeI~~A--l~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p 648 (677)
..+.++..+. ++..++.+++. . .+.+||||||||+++|||+..+|
T Consensus 96 -gl~~~~~~~~~~l~~g~l~~~l~-------~--~~~~lS~G~~~r~~la~al~~~p 142 (213)
T cd03279 96 -GLDYDQFTRIVLLPQGEFDRFLA-------R--PVSTLSGGETFLASLSLALALSE 142 (213)
T ss_pred -CCCHHHHHHhhhhhhcchHHHhc-------C--CccccCHHHHHHHHHHHHHHhHH
Confidence 3344444332 22222333321 1 56799999999999999998643
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-17 Score=189.71 Aligned_cols=140 Identities=23% Similarity=0.260 Sum_probs=107.6
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
+++.+|+++ ..+|+|++ ++++||++
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~----------------------------------------------------- 102 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVT----------------------------------------------------- 102 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEE-----------------------------------------------------
Confidence 488999754 35899999 89999843
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhcccccc-----------ccccchhhhhHH--HHhh----hcccccccccccc
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK-----------IDDFDIASVELE--TLRS----RLSVIPQDPVLFN 583 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~-----------~~~~~~~~~~~~--~LR~----~I~~V~Qd~~LFs 583 (677)
|.+|.||||||||+++|.|+++|++|+|. ++|.++.+...+ ..+. .+.+++|.|.+|.
T Consensus 103 -----gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~ 177 (590)
T PRK13409 103 -----GILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK 177 (590)
T ss_pred -----EEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhc
Confidence 66899999999999999999999999997 899888754321 1122 3456666777888
Q ss_pred cchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 584 gTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+|++||+... ...+++.++++..++.+.. |. ...+||||||||++||||++++|+++
T Consensus 178 ~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~-------~~--~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 178 GKVRELLKKV--DERGKLDEVVERLGLENIL-------DR--DISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred chHHHHHHhh--hHHHHHHHHHHHcCCchhh-------cC--ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999642 1234567777777765432 22 34689999999999999999999976
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-16 Score=172.93 Aligned_cols=180 Identities=23% Similarity=0.349 Sum_probs=127.7
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec-ccccHHH-hh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI-ASVELET-LR 511 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI-~~l~~~~-~~ 511 (677)
..-++++|++..=+.+ .+.++|+||++++||++||.|-+|-|-+-|+.+|+|+..|.+|+|.++|.|+ ...++.+ .+
T Consensus 255 ~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 255 EVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 3458999999864332 4689999999999999999999999999999999999999999999999997 4444333 35
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
..+++||+| |.+-|.|+ +.|+.||+.
T Consensus 334 ~G~~~VPed------------------------------------------------R~~~Glv~------~~sl~eN~v 359 (501)
T COG3845 334 LGLAYVPED------------------------------------------------RHGHGLVL------DLSLAENLV 359 (501)
T ss_pred cCCccCChh------------------------------------------------hccCcccc------CccHHHHhh
Confidence 567777765 22233333 457889985
Q ss_pred cCCC----------CChHHHHHHHHHccchhhHhhhhcccCCCC-----CCCCCChHHHHHHHHHHHHhccchhhc----
Q psy845 592 PFGR----------CHDTELWDALEKSHLKSKVVTMRSKLDSDV-----QGDQLSLGEKQLLCLARALLRKTKKKK---- 652 (677)
Q Consensus 592 ~~~~----------~sdeeI~~Al~~a~l~efI~~LP~GldT~v-----~G~~LSGGQRQRIaIARALLr~p~IL~---- 652 (677)
+... ....++.+ +..++-+.+|-+- ...+||||+.||+-+||-+.++|+++.
T Consensus 360 L~~~~~~~~~~~g~l~~~~i~~---------~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qP 430 (501)
T COG3845 360 LGRHDKKPFSRGGFLDRRAIRK---------FARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP 430 (501)
T ss_pred hhhccccccccccccCHHHHHH---------HHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCC
Confidence 3211 12233332 2223333333322 467999999999999999999999871
Q ss_pred --------------------ccccce------ecc-cccccEEEEEeCCeeC
Q psy845 653 --------------------KSGVNI------TRP-VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 --------------------~~~~TI------LsT-I~~aDrIlVLd~GrIV 677 (677)
.+|+-| +.- ..-||||.||.+|+++
T Consensus 431 TrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 431 TRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee
Confidence 123332 222 3459999999999985
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-16 Score=142.98 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=68.9
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n 531 (677)
++|+++||++++||.++|+||||||||||++++. +|++.++|.|+..+
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~-------------------------- 50 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEI-------------------------- 50 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHh--------------------------
Confidence 5899999999999999999999999999999987 89999999998877
Q ss_pred CCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+.++.++..+++||+ +|++||+|||.+
T Consensus 51 --------------------------------~~~~~~~~~~~~~q~--lf~~ti~~Ni~~ 77 (107)
T cd00820 51 --------------------------------REDSKDELIGRNPEL--GLEIRLRLNIFL 77 (107)
T ss_pred --------------------------------hhhhcCCEEEEechh--cchhhHHhhcee
Confidence 667778888889888 999999999974
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-16 Score=179.82 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=109.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|++. .+|+|+||+|++||++
T Consensus 2 i~i~nls~~~g~~--~~l~~vs~~i~~Ge~v------------------------------------------------- 30 (638)
T PRK10636 2 IVFSSLQIRRGVR--VLLDNATATINPGQKV------------------------------------------------- 30 (638)
T ss_pred EEEEEEEEEeCCc--eeecCcEEEECCCCEE-------------------------------------------------
Confidence 6899999999753 5999999999999954
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC---
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF--- 593 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~--- 593 (677)
|.+|.||||||||+++|.|+.+||+|+|.++|.. .++|++|++..+..|..+++.-.
T Consensus 31 ---------~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~~q~~~~~~~~~~~~v~~~~~~ 90 (638)
T PRK10636 31 ---------GLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWVNQETPALPQPALEYVIDGDRE 90 (638)
T ss_pred ---------EEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEEecCCCCCCCCHHHHHHHhhHH
Confidence 5689999999999999999999999999998853 25555554333333333322100
Q ss_pred -------------------------------CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHH
Q psy845 594 -------------------------------GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 594 -------------------------------~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIAR 642 (677)
+...++++.++++..|+.+. -.+. ...+||||||||++|||
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~------~~~~--~~~~LSgGerqRv~LA~ 162 (638)
T PRK10636 91 YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNE------QLER--PVSDFSGGWRMRLNLAQ 162 (638)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCch------hhcC--chhhcCHHHHHHHHHHH
Confidence 00001222333333332100 0111 45789999999999999
Q ss_pred HHhccchhhc---------------------ccccce---ecc---c-ccccEEEEEeCCee
Q psy845 643 ALLRKTKKKK---------------------KSGVNI---TRP---V-TSCDKVLVMDNGQA 676 (677)
Q Consensus 643 ALLr~p~IL~---------------------~~~~TI---LsT---I-~~aDrIlVLd~GrI 676 (677)
||+.+|+++. .-+.|| .|. + +-||+|++|++|++
T Consensus 163 aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 163 ALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred HHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 9999999771 113342 222 2 24899999999997
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-16 Score=156.44 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=36.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++++|.. +|.+. .+++++++ +.+||+|||||||||++++|.
T Consensus 5 ~l~l~nfk-~~~~~--~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 5 KLVLENFK-SYAGE--QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred EEEEECcc-cCCCC--eeeccCCC-----CeEEEECCCCCCHHHHHHHHH
Confidence 57788876 78643 58999987 899999999999999999997
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-15 Score=153.72 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=41.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-ccEEEECCE
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-SGQIKIDDF 500 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-~G~I~IdG~ 500 (677)
+|+++|. .+|.+. .++.++ . ...++||||||||||||+++|+++..|+ .|++..+|.
T Consensus 5 ~~~~~~f-~~~~~~--~~~~~~----~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~ 62 (251)
T cd03273 5 EIILDGF-KSYATR--TVISGF----D-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL 62 (251)
T ss_pred EEEEeCc-cccCcC--EeeccC----C-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCH
Confidence 4677776 456432 122222 2 5599999999999999999999999886 458888765
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-16 Score=151.90 Aligned_cols=166 Identities=23% Similarity=0.289 Sum_probs=122.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+.++||+..- -|-.+|.++..||.+-+|||+|||||||+-.++|+. |-+|+|.++|.|+...
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~----------- 65 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAW----------- 65 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHH-----------
Confidence 4566765432 366789999999999999999999999999999987 7899999999999988
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc-cccccccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ-DPVLFNGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q-d~~LFsgTIrENI~~~~- 594 (677)
+..++-++=+|..| ..-.|...+-..+++..
T Consensus 66 -----------------------------------------------~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP 98 (248)
T COG4138 66 -----------------------------------------------SATELARHRAYLSQQQTPPFAMPVWHYLTLHQP 98 (248)
T ss_pred -----------------------------------------------hHhHHHHHHHHHhhccCCcchhhhhhhhhhcCc
Confidence 44455555555554 34456677777776532
Q ss_pred -CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------
Q psy845 595 -RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------------- 651 (677)
Q Consensus 595 -~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------------- 651 (677)
+.-.+++.+++++.+++|.+-+ .-.+|||||.||+-+|-..++=.|..
T Consensus 99 ~~~~a~~i~~i~~~L~l~DKL~R---------s~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~ 169 (248)
T COG4138 99 DKTRTELLNDVAGALALDDKLGR---------STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS 169 (248)
T ss_pred hHHHHHHHHHHHhhhcccchhhh---------hhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHH
Confidence 2233567777777777664322 24689999999999998887632211
Q ss_pred ---------cccccce-------ecccccccEEEEEeCCee
Q psy845 652 ---------KKSGVNI-------TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 652 ---------~~~~~TI-------LsTI~~aDrIlVLd~GrI 676 (677)
..+|++| -+|+++||++..++.|++
T Consensus 170 aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l 210 (248)
T COG4138 170 ALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKL 210 (248)
T ss_pred HHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeE
Confidence 2356663 468999999999999986
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=170.63 Aligned_cols=43 Identities=30% Similarity=0.405 Sum_probs=37.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
.++++|++. ..|+|+|++|++||.++|+|+||||||||++-++
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 478888851 3699999999999999999999999999998764
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-15 Score=162.05 Aligned_cols=143 Identities=23% Similarity=0.324 Sum_probs=107.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-|.++||+|+|+++ +.+.+++||-|..++++|+|||+|+|||||+|++.|...|+.|.+.-.-+.. +
T Consensus 388 pvi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~-----------~ 455 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK-----------L 455 (614)
T ss_pred CeEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc-----------c
Confidence 468999999999876 4799999999999999999999999999999999999999999886432221 1
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc-C
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP-F 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~-~ 593 (677)
++-.| | .+|..-.+.|.-||+.+ +
T Consensus 456 ~~y~Q---------------------------------------------------h----~~e~ldl~~s~le~~~~~~ 480 (614)
T KOG0927|consen 456 PRYNQ---------------------------------------------------H----LAEQLDLDKSSLEFMMPKF 480 (614)
T ss_pred hhhhh---------------------------------------------------h----hHhhcCcchhHHHHHHHhc
Confidence 10011 1 01223345566667643 2
Q ss_pred C-CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc
Q psy845 594 G-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK 652 (677)
Q Consensus 594 ~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~ 652 (677)
. .-..+++...+...|+....+.. .-++||+|||.|++.||.+++.|.++.
T Consensus 481 ~~~~~~e~~r~ilgrfgLtgd~q~~--------p~~~LS~Gqr~rVlFa~l~~kqP~lLl 532 (614)
T KOG0927|consen 481 PDEKELEEMRSILGRFGLTGDAQVV--------PMSQLSDGQRRRVLFARLAVKQPHLLL 532 (614)
T ss_pred cccchHHHHHHHHHHhCCCcccccc--------chhhcccccchhHHHHHHHhcCCcEEE
Confidence 3 34567788899999887443322 456999999999999999999999883
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-14 Score=174.87 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=36.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~ 482 (677)
.++++|++. ..|+|+|++|++||.++|.|+||||||||++
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 478888752 3799999999999999999999999999999
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-15 Score=175.30 Aligned_cols=169 Identities=24% Similarity=0.266 Sum_probs=122.3
Q ss_pred EEEeeeEEe--CCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC--CCccEEEECCEecccccHHHhhhh
Q psy845 438 KFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE--LSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 438 ~fknVsFsY--~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~--p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
..+|+.+.- .++....|+|||=-++||..+|++|+||||||||++.|+|=.+ ..+|+|+|||.+..+
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--------- 859 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--------- 859 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---------
Confidence 344444332 2345579999999999999999999999999999999998643 356888999988643
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc-cccccccchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ-DPVLFNGTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q-d~~LFsgTIrENI~~ 592 (677)
+..++.+|||.| |-++-.-||||-|.+
T Consensus 860 ----------------------------------------------------~tF~R~~GYvqQ~DiH~~~~TVrESL~f 887 (1391)
T KOG0065|consen 860 ----------------------------------------------------ETFARVSGYVEQQDIHSPELTVRESLRF 887 (1391)
T ss_pred ----------------------------------------------------hhhccccceeecccccCcccchHHHHHH
Confidence 345566666654 445557899999854
Q ss_pred C------CCCChHH----HHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccch-hh--------
Q psy845 593 F------GRCHDTE----LWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK-KK-------- 651 (677)
Q Consensus 593 ~------~~~sdee----I~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~-IL-------- 651 (677)
. .+.+++| ++++.+..++.+.-++ .| .|..||.+||.|+.||=-|+.||+ |+
T Consensus 888 SA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~da-------iVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 888 SAALRLPKEVSDEEKYEYVEEVIELLELKEYADA-------LVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhh-------hccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 2 2445544 5666777666655433 23 478999999999999999999994 43
Q ss_pred ----------------cccccceecc--------cccccEEEEEeCC
Q psy845 652 ----------------KKSGVNITRP--------VTSCDKVLVMDNG 674 (677)
Q Consensus 652 ----------------~~~~~TILsT--------I~~aDrIlVLd~G 674 (677)
..+|+||+=| .+..|+++.|++|
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 2467775322 3568999999876
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-14 Score=142.52 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=32.7
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHh----cCCCCCccEEE
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALF----RLVELSSGQIK 496 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~----r~y~p~~G~I~ 496 (677)
++++.+| +++|+||||||||||+++|. |...|.+|.+.
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~ 58 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA 58 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccccccc
Confidence 4566777 99999999999999999994 88888887766
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-14 Score=151.52 Aligned_cols=146 Identities=27% Similarity=0.366 Sum_probs=109.3
Q ss_pred cccccCCCCCchhHHHHHHhhhh-----ccccccccccchhhhhHHHHhh----hccccccccccc-c--cchhhc----
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETLRS----RLSVIPQDPVLF-N--GTIRYN---- 589 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~-----~~g~i~~~~~~~~~~~~~~LR~----~I~~V~Qd~~LF-s--gTIrEN---- 589 (677)
+.||++|+|||-.+..+|||.+- -+|+|.++|+|.-..+.+++|+ +|++|+|||.-- | -||..-
T Consensus 40 AlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~ 119 (534)
T COG4172 40 ALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119 (534)
T ss_pred EEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHH
Confidence 56899999999999999999876 5789999999999999988887 899999999642 2 244443
Q ss_pred cccCC----CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhccc-----------
Q psy845 590 LDPFG----RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKKS----------- 654 (677)
Q Consensus 590 I~~~~----~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~~----------- 654 (677)
|.... +.-.+++.+.++.+|+.+-=.. ++. ...+||||||||+.||-|+..+|+++...
T Consensus 120 l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r----l~~--yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQ 193 (534)
T COG4172 120 LRLHRGLSRAAARARALELLELVGIPEPEKR----LDA--YPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQ 193 (534)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCchhhh----hhh--CCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhH
Confidence 33332 3345667788888888653222 111 46799999999999999999999987211
Q ss_pred --------------ccc---e---ecccc-cccEEEEEeCCeeC
Q psy845 655 --------------GVN---I---TRPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 655 --------------~~T---I---LsTI~-~aDrIlVLd~GrIV 677 (677)
|.. | ++.++ -||||+||.+|++|
T Consensus 194 aQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 194 AQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred HHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 111 2 22333 39999999999986
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.6e-14 Score=143.10 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=39.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
.|+++|. .+|.+. .. +...+| .++|+||||||||||+.+|++...++.|++..++
T Consensus 3 ~i~l~nf-~~~~~~--~~-----~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~ 57 (247)
T cd03275 3 RLELENF-KSYKGR--HV-----IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKN 57 (247)
T ss_pred EEEEECc-cccCCC--ee-----ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccc
Confidence 4677775 446432 11 222234 9999999999999999999999988888776543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-13 Score=158.91 Aligned_cols=40 Identities=30% Similarity=0.379 Sum_probs=36.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~ 482 (677)
.++++|++. ..|+|+|++|++||.+||+|+||||||||++
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 488888862 2699999999999999999999999999998
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-13 Score=149.62 Aligned_cols=61 Identities=25% Similarity=0.453 Sum_probs=54.0
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I 495 (677)
....|.++|++++|++. ++++|+.|++++|+++||+|++||||||+++.+.+=..|..-++
T Consensus 72 ~s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred ccccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 44579999999999875 69999999999999999999999999999999999888755433
|
|
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=128.32 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=62.9
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
+..|+++|+.|+|+..+ |..-|+|+++++|.+.-+||.+|||||||+|+|.|=.-.-.|.|.+.|.+-
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrsa 78 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSA 78 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCc
Confidence 56799999999998765 699999999999999999999999999999999998888889999999874
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-12 Score=140.93 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=124.6
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
.+.+++.+|+|.|+++..+.++++|+.++.-+++++||++|+||||+++++.+-.+|..|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 456899999999988755799999999999999999999999999999999999999999887764 445
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
+++-.|.+ .+.+..+++-|.- .+-..+
T Consensus 429 i~~f~Qhh-------------------------------------------vd~l~~~v~~vd~---------~~~~~p- 455 (582)
T KOG0062|consen 429 IKYFAQHH-------------------------------------------VDFLDKNVNAVDF---------MEKSFP- 455 (582)
T ss_pred ecchhHhh-------------------------------------------hhHHHHHhHHHHH---------HHHhCC-
Confidence 66666653 2222222221111 111112
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcc--------------------
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKK-------------------- 653 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~-------------------- 653 (677)
..++||+++.|...|+...+..- .-..||||||-|+++|-+-..+|.++.+
T Consensus 456 -G~~~ee~r~hl~~~Gl~g~la~~--------si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 456 -GKTEEEIRRHLGSFGLSGELALQ--------SIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred -CCCHHHHHHHHHhcCCCchhhhc--------cccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH
Confidence 23789999999998887654332 2357999999999999999999997722
Q ss_pred --cccc--eecc---cc-cccEEEEEeCCee
Q psy845 654 --SGVN--ITRP---VT-SCDKVLVMDNGQA 676 (677)
Q Consensus 654 --~~~T--ILsT---I~-~aDrIlVLd~GrI 676 (677)
+|-- |.|. +. -|+.+.|.+||++
T Consensus 527 ~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~v 557 (582)
T KOG0062|consen 527 NFNGGVVLVSHDEEFISSLCKELWVVEDGKV 557 (582)
T ss_pred hcCCcEEEEECcHHHHhhcCceeEEEcCCcE
Confidence 1111 1222 22 3999999999987
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-08 Score=114.38 Aligned_cols=34 Identities=38% Similarity=0.734 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 373 aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 373 ALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 5689999999999999999999999999999976
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-12 Score=140.21 Aligned_cols=144 Identities=28% Similarity=0.390 Sum_probs=94.2
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe--cccccHHHhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD--IASVELETLR 511 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d--I~~l~~~~~~ 511 (677)
..+|..+|.+.+|+++ ..|++-|+++..|.++|+|||+|+|||||+++|.. |.|..-.++ .+....+
T Consensus 78 ~~Di~~~~fdLa~G~k--~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~--- 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK--ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTE--- 146 (582)
T ss_pred ccceeeeeeeeeecch--hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchH---
Confidence 4579999999999864 58999999999999999999999999999999998 333221110 1110000
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
..+++ ++-+..|. -++.||..|-.+
T Consensus 147 -----------------------------------~~~~~-----------l~~D~~~~--dfl~~e~~l~~~------- 171 (582)
T KOG0062|consen 147 -----------------------------------ALQSV-----------LESDTERL--DFLAEEKELLAG------- 171 (582)
T ss_pred -----------------------------------HHhhh-----------hhccHHHH--HHHHhhhhhhcc-------
Confidence 00000 01111111 122333222211
Q ss_pred cCCCCChHHHHH-HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcccc
Q psy845 592 PFGRCHDTELWD-ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKKSG 655 (677)
Q Consensus 592 ~~~~~sdeeI~~-Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~~~ 655 (677)
.+.+||.+ ++.-.|..+.....| -..||||=|-|+++|||++++|++|.+..
T Consensus 172 ----~~l~ei~~~~L~glGFt~emq~~p--------t~slSGGWrMrlaLARAlf~~pDlLLLDE 224 (582)
T KOG0062|consen 172 ----LTLEEIYDKILAGLGFTPEMQLQP--------TKSLSGGWRMRLALARALFAKPDLLLLDE 224 (582)
T ss_pred ----chHHHHHHHHHHhCCCCHHHHhcc--------ccccCcchhhHHHHHHHHhcCCCEEeecC
Confidence 14566666 777777776665554 45899999999999999999999984433
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-11 Score=134.00 Aligned_cols=35 Identities=34% Similarity=0.624 Sum_probs=32.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~ 494 (677)
+|..||.++++||+|-||||++++|+|..+|++|+
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 45667899999999999999999999999999997
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-12 Score=155.63 Aligned_cols=164 Identities=21% Similarity=0.280 Sum_probs=117.0
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhhhcccccCCccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~ 527 (677)
-.+|+|+|.-++|||.+-+.||.|||||||++.|+|-.+-. .|+|..||+|.++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~---------------------- 185 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEF---------------------- 185 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccc----------------------
Confidence 46999999999999999999999999999999999976642 46899999998876
Q ss_pred cccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-------CCChH
Q psy845 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG-------RCHDT 599 (677)
Q Consensus 528 ~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~-------~~sde 599 (677)
.. ++.++|.+|+..-| ..|+||-+++.. ++++-
T Consensus 186 ------------------------------------~~---~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~ 226 (1391)
T KOG0065|consen 186 ------------------------------------VP---KKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEV 226 (1391)
T ss_pred ------------------------------------cc---CceEEeccccccccceeEEeehhhHHHhccCCccccccc
Confidence 22 55667777665555 679999996432 22211
Q ss_pred HHHHHHHHccchhh---HhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhhc---------------------
Q psy845 600 ELWDALEKSHLKSK---VVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKKK--------------------- 652 (677)
Q Consensus 600 eI~~Al~~a~l~ef---I~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL~--------------------- 652 (677)
+-.+ +.+...|. +-.|....||.+ -....|||||.|+++|-++..+++++-
T Consensus 227 ~R~e--~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr 304 (1391)
T KOG0065|consen 227 SRRE--KLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALR 304 (1391)
T ss_pred cHHH--HHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHH
Confidence 1111 11112222 223556788888 357899999999999999999998771
Q ss_pred ----ccccc-e-------ecccccccEEEEEeCCeeC
Q psy845 653 ----KSGVN-I-------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----~~~~T-I-------LsTI~~aDrIlVLd~GrIV 677 (677)
..+.| + ..+..-.|+|.+|.+|++|
T Consensus 305 ~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i 341 (1391)
T KOG0065|consen 305 QLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI 341 (1391)
T ss_pred HHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE
Confidence 12222 1 1234458999999999975
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-08 Score=114.91 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=32.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+|+|++|+|++||.|
T Consensus 353 aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 386 (547)
T PRK10522 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (547)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 5689999999999999999999999999999975
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-08 Score=116.37 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+|+|++|+|++||.|
T Consensus 509 aIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 509 ALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 5689999999999999999999999999999976
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=127.80 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=53.8
Q ss_pred hhHhhhhcccCCCC--CCCCCChHH--------HHHHHHHHHHhccchhhc-------------------c--cccc-e-
Q psy845 612 SKVVTMRSKLDSDV--QGDQLSLGE--------KQLLCLARALLRKTKKKK-------------------K--SGVN-I- 658 (677)
Q Consensus 612 efI~~LP~GldT~v--~G~~LSGGQ--------RQRIaIARALLr~p~IL~-------------------~--~~~T-I- 658 (677)
|.+.++++++++.. .|.++|||| |||+++||+++++++|.. . .+.| |
T Consensus 110 Dei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~iv 189 (249)
T cd01128 110 DSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELV 189 (249)
T ss_pred ECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeheecCCCcccchHHHHHhcCCCcEEE
Confidence 56788999999988 899999999 999999999999998761 0 1233 2
Q ss_pred ----ecccccccEEEEEeCCee
Q psy845 659 ----TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 659 ----LsTI~~aDrIlVLd~GrI 676 (677)
+++..++|.|.||++|++
T Consensus 190 ls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 190 LDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred EchHHhhCCCCCeEEEcCCCCc
Confidence 667889999999999975
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-11 Score=124.21 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=26.4
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++++.+| ..+|+|||||||||++..|.-.
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~ 44 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIG 44 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHH
Confidence 5566777776 7799999999999999999743
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-08 Score=117.64 Aligned_cols=34 Identities=41% Similarity=0.579 Sum_probs=32.4
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+|+|++|+|++||.|
T Consensus 483 aIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 516 (686)
T TIGR03797 483 AIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD 516 (686)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 5689999999999999999999999999999986
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.7e-08 Score=113.55 Aligned_cols=35 Identities=46% Similarity=0.709 Sum_probs=33.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.||+||||||||+|+|+|+|+|++|+|++||.|
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d 536 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 36789999999999999999999999999999998
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-11 Score=133.04 Aligned_cols=144 Identities=24% Similarity=0.280 Sum_probs=98.5
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+-+-+.||+|.|++. .+..++++|-|.--.+||||||+|.|||||++||.|-.+|++|+.+-+- |-+|
T Consensus 585 PvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred CeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 456789999999876 4689999999999999999999999999999999999999999875432 3345
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
|+-.|+.. +.|+- ..|-.|.+.-.=
T Consensus 653 G~FdQh~~-------------------------------------------E~L~~------------Eetp~EyLqr~F 677 (807)
T KOG0066|consen 653 GWFDQHAN-------------------------------------------EALNG------------EETPVEYLQRKF 677 (807)
T ss_pred echhhhhH-------------------------------------------Hhhcc------------ccCHHHHHHHhc
Confidence 55444311 01100 012222221000
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcc
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKK 653 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~ 653 (677)
+...++-.+++-..|+..- -+| +.-..||||||-|+++|---++.|+++.+
T Consensus 678 Nlpyq~ARK~LG~fGL~sH-------AHT-ikikdLSGGQKaRValaeLal~~PDvlIL 728 (807)
T KOG0066|consen 678 NLPYQEARKQLGTFGLASH-------AHT-IKIKDLSGGQKARVALAELALGGPDVLIL 728 (807)
T ss_pred CCChHHHHHHhhhhhhhhc-------cce-EeeeecCCcchHHHHHHHHhcCCCCEEEe
Confidence 2233444555555444321 122 25679999999999999999999998743
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-08 Score=112.22 Aligned_cols=34 Identities=47% Similarity=0.736 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+++|++|+|++||.|
T Consensus 362 ~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~ 395 (571)
T TIGR02203 362 ALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395 (571)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence 4679999999999999999999999999999976
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-11 Score=132.74 Aligned_cols=47 Identities=32% Similarity=0.640 Sum_probs=42.3
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--------CCCCccEEEE
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--------VELSSGQIKI 497 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--------y~p~~G~I~I 497 (677)
.++|+|+||+|+|||.+++||+|||||||++++++|. |.|++|.|.+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~v 450 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV 450 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceec
Confidence 4689999999999999999999999999999999986 6777777765
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-07 Score=106.84 Aligned_cols=34 Identities=44% Similarity=0.750 Sum_probs=31.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+++|++|+|++||.|
T Consensus 370 ~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 370 ALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 5679999999999999999999999999999975
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-07 Score=108.78 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=32.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+|+|++|+|++||.|
T Consensus 511 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~ 544 (711)
T TIGR00958 511 ALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 544 (711)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 5689999999999999999999999999999985
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.9e-11 Score=118.52 Aligned_cols=156 Identities=24% Similarity=0.388 Sum_probs=98.5
Q ss_pred EEeeeEEe--CCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC----CCccEEEECCEecccccHHHhh-
Q psy845 439 FKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE----LSSGQIKIDDFDIASVELETLR- 511 (677)
Q Consensus 439 fknVsFsY--~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~----p~~G~I~IdG~dI~~l~~~~~~- 511 (677)
++|++.-+ +++...+.+++|++.+.||+-|+||+||||||-+++.++|... .+..+..+|++|+-++++.+-|
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 34444433 3344468999999999999999999999999999999999864 2334455667777666555433
Q ss_pred ---hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 512 ---SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 512 ---~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
++|++++|+|.--- | +.+..-+ -+-+
T Consensus 86 ~ig~~isMIFQeP~sCL---------------------D----------------PS~~iG~--------------QlIq 114 (330)
T COG4170 86 LVGHNVSMIFQEPQSCL---------------------D----------------PSERVGR--------------QLIQ 114 (330)
T ss_pred hhccchhhhhcCchhhc---------------------C----------------hHHHHHH--------------HHHh
Confidence 34455555553111 0 1111100 1334
Q ss_pred ccc---cCCC------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 589 NLD---PFGR------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 589 NI~---~~~~------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
||- +-++ -...+-.+.+.++|++|--+-+. . ....|-.||-|++.||-|+..+|+.+
T Consensus 115 ~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~-S-----YP~ElTeGE~QKVMIA~A~AnqPrLL 180 (330)
T COG4170 115 NIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR-S-----YPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH-h-----CcchhccCcceeeeeehhhccCCceE
Confidence 552 2111 12344566788888875422110 0 34578889999999999999999866
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-07 Score=108.52 Aligned_cols=34 Identities=38% Similarity=0.631 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+|+|++|+|++||.|
T Consensus 504 aIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~ 537 (708)
T TIGR01193 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537 (708)
T ss_pred EEECCCCCCHHHHHHHHhccCCCCCcEEEECCEE
Confidence 5689999999999999999999999999999976
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-07 Score=108.58 Aligned_cols=34 Identities=32% Similarity=0.601 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 348 ~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 381 (544)
T TIGR01842 348 AIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGAD 381 (544)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence 5689999999999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.8e-08 Score=109.04 Aligned_cols=34 Identities=38% Similarity=0.674 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 352 ~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~ 385 (529)
T TIGR02857 352 ALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVP 385 (529)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 5689999999999999999999999999999975
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-07 Score=111.02 Aligned_cols=34 Identities=41% Similarity=0.724 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+|+|++|+|++||.|
T Consensus 495 aIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 495 AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 5689999999999999999999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-07 Score=107.30 Aligned_cols=34 Identities=35% Similarity=0.666 Sum_probs=32.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|++|||||||++.|+|+|+|++|+|++||.|
T Consensus 365 aIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 365 AILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 5689999999999999999999999999999976
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-08 Score=112.30 Aligned_cols=34 Identities=47% Similarity=0.704 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 487 aivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~ 520 (694)
T TIGR01846 487 GIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD 520 (694)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 5689999999999999999999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-07 Score=105.70 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=32.6
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 371 ~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~ 405 (555)
T TIGR01194 371 VFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAA 405 (555)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 35689999999999999999999999999999976
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-07 Score=103.28 Aligned_cols=34 Identities=53% Similarity=0.727 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+++|++|+|++||.|
T Consensus 365 ~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~ 398 (588)
T PRK13657 365 AIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD 398 (588)
T ss_pred EEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence 5689999999999999999999999999999975
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-07 Score=104.31 Aligned_cols=34 Identities=38% Similarity=0.644 Sum_probs=32.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+|+|++|+|++||.|
T Consensus 371 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~ 404 (592)
T PRK10790 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRP 404 (592)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCCceEEECCEE
Confidence 5689999999999999999999999999999976
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-10 Score=128.73 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=56.4
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECCEecccccHHHhhhhcccccCCc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
.||+|||+++++||.++|+||||||||||++ .++.+|++| +|.+||.++.+.+..++ +.+-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai-~~LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAM-ETLDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHH-HHHHHHHHhh
Confidence 5899999999999999999999999999999 777788888 89999999987543332 2223888875
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-06 Score=101.33 Aligned_cols=34 Identities=50% Similarity=0.732 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 365 ~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 398 (585)
T TIGR01192 365 AIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID 398 (585)
T ss_pred EEECCCCCCHHHHHHHHccCCCCCCCEEEECCEE
Confidence 5689999999999999999999999999999875
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-07 Score=104.50 Aligned_cols=34 Identities=38% Similarity=0.592 Sum_probs=32.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||++.|+|+++|++|+|++||.|
T Consensus 370 aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~ 403 (574)
T PRK11160 370 ALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403 (574)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 5689999999999999999999999999999976
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6e-07 Score=103.18 Aligned_cols=34 Identities=44% Similarity=0.749 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 345 ~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~ 378 (569)
T PRK10789 345 GICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378 (569)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCCCEEEECCEE
Confidence 5689999999999999999999999999999975
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-10 Score=113.22 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=29.6
Q ss_pred cccceeeEEeCCc-EEEEEcCCCCChHHHHHHHh
Q psy845 453 VLANVSFRINHGE-NIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 453 VLknISl~I~~GE-~VAIVGpSGSGKSTLi~LL~ 485 (677)
...++|+++++|+ +++|+|||||||||+++.+.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3457899999996 59999999999999999988
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-09 Score=114.98 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=27.4
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++++..+| ..+|+|||||||||++.+|.-+.
T Consensus 12 ~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~~~~ 45 (276)
T cd03241 12 IEELELDFEEG-LTVLTGETGAGKSILLDALSLLL 45 (276)
T ss_pred eeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 35567777777 79999999999999999986443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.6e-06 Score=94.43 Aligned_cols=35 Identities=49% Similarity=0.766 Sum_probs=32.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.||.+|||||||++.|+|+|+|++|+|++||.|
T Consensus 358 vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d 392 (567)
T COG1132 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID 392 (567)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe
Confidence 36789999999999999999999999999998887
|
|
| >PRK11098 microcin B17 transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-05 Score=89.29 Aligned_cols=276 Identities=9% Similarity=0.070 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhh--------hhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 115 PLLIITTLYHLISKVFRSVYLRSVFQNMWS--------MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVF 186 (677)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (677)
.+++..+++..--.++.+.|-++.+.-... +.-.+|.....+.+.++..+.+.++.+.+.+-++-+.+++
T Consensus 95 ~~il~l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~w-- 172 (409)
T PRK11098 95 ALIIFVTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTA-- 172 (409)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 355556666666667777777776666654 5556677777777777778888888888887777777766
Q ss_pred HHHHHHHHHHHhhhccccccccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH-------------
Q psy845 187 QNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF------------- 253 (677)
Q Consensus 187 q~~~~~~f~~~~~~~~~~~f~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l------------- 253 (677)
||....++=...+ --|.|.+|++-|.....+...+..+ .+++++++++.-..++..++..+
T Consensus 173 --LT~~yl~~Wl~~r---~ienPDQRIqEDi~~F~~~tl~L~~-~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~L 246 (409)
T PRK11098 173 --MNEYYMAHWQKLR---HIEGAAQRVQEDTMRFASTLENLGV-SFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGL 246 (409)
T ss_pred --HHHHHHHHHHhcC---CCCCccHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccccccccCCCchHH
Confidence 5554444433332 1268999988888877765555443 58888888888777777766532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH---HHHHHHchHHHHHHhccHH-HHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFS---NVSSTVSGLHIIHVFHKEQ-DFVRRFCEQYDENSTTLFL 329 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s---~~~E~l~Gi~tIkaf~~e~-~~~~~~~~~~~~~~~~~~~ 329 (677)
..++++-.++...+....+++..++.-.++...++... +..|.-+ +.|. ...++|++..+...+...+
T Consensus 247 v~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~~~ 318 (409)
T PRK11098 247 VIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLYFH 318 (409)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333343333332222222222222 2223222 2222 2233343333333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy845 330 CSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKK 408 (677)
Q Consensus 330 ~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~ 408 (677)
... ...+......+.. +.-.++..-...+|+++.|.+........++.+.++.+++.+.++.+-.+..+|+.++.+.
T Consensus 319 ~~~-l~~f~~~y~~~~~-i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 319 YMY-FNIARILYLQVDN-VFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHH-HHHHHHHHHHHHH-HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111111111111 1112223346679999999999999999999999999999999999999999999998743
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-09 Score=109.22 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=32.6
Q ss_pred HHHHHHHHHccchhhHhhhhcccCCCC-CCCCCChHHHHHHHHHHHH----hccchhh
Q psy845 599 TELWDALEKSHLKSKVVTMRSKLDSDV-QGDQLSLGEKQLLCLARAL----LRKTKKK 651 (677)
Q Consensus 599 eeI~~Al~~a~l~efI~~LP~GldT~v-~G~~LSGGQRQRIaIARAL----Lr~p~IL 651 (677)
+.+.+++..... |.+.++|.+.+..- +..+||||||||+.+|+++ +++|+++
T Consensus 96 ~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~ll 152 (213)
T cd03277 96 DRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFR 152 (213)
T ss_pred HHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEE
Confidence 334444444333 44456666554322 6789999999998877554 5788755
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-09 Score=106.31 Aligned_cols=56 Identities=20% Similarity=0.123 Sum_probs=41.7
Q ss_pred HhhhhcccCCCCCCCCCChHHHHHHHHHHHHh----ccchhh------------------------cccccce------e
Q psy845 614 VVTMRSKLDSDVQGDQLSLGEKQLLCLARALL----RKTKKK------------------------KKSGVNI------T 659 (677)
Q Consensus 614 I~~LP~GldT~v~G~~LSGGQRQRIaIARALL----r~p~IL------------------------~~~~~TI------L 659 (677)
+..+|+|-.|++ ||||||||+++|||+. ++|+++ ..+++|+ .
T Consensus 83 ~~~~~~~~~~~~----LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 83 YFLVLQGKVEQI----LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred eEEecCCcCccc----CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 456788888876 9999999999999995 677754 1123552 2
Q ss_pred cccccccEEEEEeC
Q psy845 660 RPVTSCDKVLVMDN 673 (677)
Q Consensus 660 sTI~~aDrIlVLd~ 673 (677)
+.++.|||++++++
T Consensus 159 ~~~~~adrvi~i~~ 172 (178)
T cd03239 159 EMFENADKLIGVLF 172 (178)
T ss_pred HHHhhCCeEEEEEE
Confidence 34567999999986
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-06 Score=98.57 Aligned_cols=35 Identities=40% Similarity=0.631 Sum_probs=32.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.-+.+|++|||||||++.|+|+| |++|+|++||.|
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~ 412 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIE 412 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEe
Confidence 34678999999999999999999 999999999976
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.84 E-value=7e-09 Score=113.95 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCcccc-----------ceeeEEeCC
Q psy845 396 FLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLA-----------NVSFRINHG 464 (677)
Q Consensus 396 ~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLk-----------nISl~I~~G 464 (677)
..+.+|+.++++ .++.... .+. ...+.++|+||+|.||++. .+|+ |+++.|.+|
T Consensus 104 ~~~~ER~~~Ll~-v~~vn~~-----------~~e--~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~G 168 (415)
T TIGR00767 104 PKEGERYFALLK-VESVNGD-----------DPE--KAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKG 168 (415)
T ss_pred cccHhHHHHHhC-CCccCCC-----------Ccc--ccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCC
Confidence 457899999983 3322111 111 1357899999999998764 6997 999999999
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELS 491 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~ 491 (677)
|+++||||+|+|||||++++.+.+...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc
Confidence 999999999999999999999988654
|
Members of this family differ in the specificity of RNA binding. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-09 Score=119.18 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=92.8
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
++.-+|+.+. ..|-++- ..++|+.+||+||+|-||||-+|+|+|-..|.=|+- |+ -.++ .+-+++-=|--.|+
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~--pp~w-deVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--ED--PPSW-DEVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CC--CCCH-HHHHHHhhhhHHHH
Confidence 4566786542 2333322 356899999999999999999999999999998853 22 1111 01112211211111
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHH
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTE 600 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdee 600 (677)
- |-+.-+|+|+.- .++-||--=|-.+.|+++|=+.-..+ ...
T Consensus 152 Y-----------------------F~~l~~g~~r~v-------------~K~QYVd~iPk~~KG~v~elLk~~de--~g~ 193 (591)
T COG1245 152 Y-----------------------FKKLYEGELRAV-------------HKPQYVDLIPKVVKGKVGELLKKVDE--RGK 193 (591)
T ss_pred H-----------------------HHHHHcCCccee-------------cchHHHHHHHHHhcchHHHHHHhhhh--cCc
Confidence 1 122233433321 23445555566678888777641100 011
Q ss_pred HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 601 LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 601 I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..+..++.++.+.+.+ .-.+|||||-||+|||-|++|++++.
T Consensus 194 ~devve~l~L~nvl~r---------~v~~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 194 FDEVVERLGLENVLDR---------DVSELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHHHHHhcchhhhhh---------hhhhcCchHHHHHHHHHHHhccCCEE
Confidence 3334444444443322 46799999999999999999999876
|
|
| >PRK12369 putative transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.5e-05 Score=81.87 Aligned_cols=282 Identities=10% Similarity=0.069 Sum_probs=165.2
Q ss_pred hhhHHH--HHHHHHHHHHHHHHHHHHhhhhhhhhhhh--------hhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy845 110 PWFALP--LLIITTLYHLISKVFRSVYLRSVFQNMWS--------MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRS 179 (677)
Q Consensus 110 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 179 (677)
+|-.+. +++...+.+.--.++.+.|-+..+.-... +.-.++--...+.+.++..+.+.+..+.+.+.++-
T Consensus 13 ~~~ll~~~~~i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i 92 (326)
T PRK12369 13 LWAYGGLFFILLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAF 92 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 56777777777778888888777766554 34445555566677777888888888888888988
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH-----
Q psy845 180 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA----- 254 (677)
Q Consensus 180 ~~~~~~~q~~~~~~f~~~~~~~~~~~f~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~la----- 254 (677)
+.++++-+++...=+ ... +-=|.|..|++-|.+...+...+..+ .+++++++++....++..++..+.
T Consensus 93 ~WR~wLT~~~l~~wl----~~~--~~iDNPDQRI~EDi~~f~~~tl~l~~-~~i~s~~~l~sF~~iLW~lS~~l~~~~~g 165 (326)
T PRK12369 93 RWREAMTFSYLKFWR----NKR--DNIEGSSQRIQEDTYRFAKIMESLGL-SFLRAIMTLIAFIPILWGLSDGVSLPFLK 165 (326)
T ss_pred HHHHHHHHHHHHHHh----cCC--CCCCCccHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCceeeecC
Confidence 888886665555433 222 11278999988888887775555444 588888888887777777663221
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH---HHHHHHchHHHHHHhccH-HHHHHHHHHHHHHH
Q psy845 255 -------LPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFS---NVSSTVSGLHIIHVFHKE-QDFVRRFCEQYDEN 323 (677)
Q Consensus 255 -------l~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s---~~~E~l~Gi~tIkaf~~e-~~~~~~~~~~~~~~ 323 (677)
..+++..++...+..+.+++..++.-.++...+++.- +..|.-+. + .| +...++|.+..+..
T Consensus 166 ~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~------~-~E~~~l~~~f~~v~~n~ 238 (326)
T PRK12369 166 DIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN------Y-AKPETLIELFTGLRFNY 238 (326)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh------h-hhHHHHHHHHHHHHHHH
Confidence 1112222222233333333332222222222222211 12222211 1 22 22333443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERIN 403 (677)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~ 403 (677)
.+...... ...++......+.. +.-.++.......|.++.|.+.........+.+.+..+++.+.++.+-.+.++|+.
T Consensus 239 ~~~~~~~~-~l~~~~~~y~~~~~-i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~ 316 (326)
T PRK12369 239 FRLFLHYG-YFNIWLISFSQMMV-IVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLK 316 (326)
T ss_pred HHHHHHHH-hHHHHHHHHHHHHH-HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111 11111111111111 11122233456799999999999888899999999999999999999999999999
Q ss_pred Hhhh
Q psy845 404 NCSK 407 (677)
Q Consensus 404 eil~ 407 (677)
++.+
T Consensus 317 ~f~~ 320 (326)
T PRK12369 317 EFEK 320 (326)
T ss_pred HHHH
Confidence 8863
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8e-09 Score=102.48 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=59.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHH
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVA 541 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~ 541 (677)
++|+.++|+||||||||||+++|++.++ . +... .....
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~-~---~~~~-~~~~t------------------------------------- 40 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP-N---LQLS-VSATT------------------------------------- 40 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc-c---ceec-cCccc-------------------------------------
Confidence 5899999999999999999999999875 1 1110 00000
Q ss_pred HHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHH
Q psy845 542 LFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEK 607 (677)
Q Consensus 542 ~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~ 607 (677)
-+|.+|+ +||.|+...+.+++++. +.|+.+++.+++.+|. ++ .+.+++.++++.
T Consensus 41 ----r~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-y~--~~~~~i~~~l~~ 94 (205)
T PRK00300 41 ----RAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVFGNY-YG--TPRSPVEEALAA 94 (205)
T ss_pred ----cCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEECCcc-cc--CcHHHHHHHHHc
Confidence 1244555 45666655577777664 4578888888888884 22 244555555443
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.7e-09 Score=109.65 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=86.3
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCC
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAG 534 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~ 534 (677)
++.++++.+| ..+|+|||||||||++.+|.-+....++.- .+..++-.... -...+...++.... .-.+...
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~-~~~~~~i~~~~--~~~~v~~~f~~~~~-~~~i~~~--- 84 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRT-SRDKELIRWGA--EEAKISAVLERQGG-ELALELT--- 84 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCC-CCHHHHHhcCC--CCEEEEEEEEeCCC-eEEEEEE---
Confidence 4456677776 688999999999999999866543221110 00011100000 00111111111000 0001000
Q ss_pred CchhHHHHHHhhhhccccccccccchhh-hhHHHHhhhcccccccccccccchhhccccCC---CCChHH-------HHH
Q psy845 535 KSSLLVALFRLVELSSGQIKIDDFDIAS-VELETLRSRLSVIPQDPVLFNGTIRYNLDPFG---RCHDTE-------LWD 603 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~---~~sdee-------I~~ 603 (677)
+...+...+++||..++. .+..++-..+.+-|++..|++++-.+-..+.. ...+.+ ..+
T Consensus 85 ----------~~~~~~~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~ 154 (270)
T cd03242 85 ----------IRSGGGRKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQK 154 (270)
T ss_pred ----------EEcCCceEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 001122356788888776 34555556677778888888655444332211 111122 222
Q ss_pred HHHHccchhhHhhhhcccCCCC--CC----CCCChHHHHHHHHHHHHh---------ccchhh
Q psy845 604 ALEKSHLKSKVVTMRSKLDSDV--QG----DQLSLGEKQLLCLARALL---------RKTKKK 651 (677)
Q Consensus 604 Al~~a~l~efI~~LP~GldT~v--~G----~~LSGGQRQRIaIARALL---------r~p~IL 651 (677)
++++-+ + +.+-|+.-+..+ ++ ..+|+||||++++||++. ++|+++
T Consensus 155 ~~~~~~--~-~~~g~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~il 214 (270)
T cd03242 155 ALRQRN--A-LLKGPHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVL 214 (270)
T ss_pred HHHHHH--H-HhCCCChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 222111 1 111233333322 33 348999999999999984 678765
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-09 Score=115.40 Aligned_cols=39 Identities=41% Similarity=0.603 Sum_probs=36.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
|-..+|.|||||||||+||.||.+|++|+|++||.|+++
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 445689999999999999999999999999999999876
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-08 Score=106.22 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=65.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc-HHHhhhhcccccCCccccccccccCCCCCchhHHHHH
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALF 543 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~-~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~ 543 (677)
+.++|+||+||||||+++.|+|++.|++|+|.++|.++..++ ..++...++++||+..--...+.+| |.|..-+.|+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~-~~k~~~~~~~i 190 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG-CPKAEGMMMLI 190 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc-chHHHHHHHHH
Confidence 789999999999999999999999999999999999998664 4567778899999764433445555 77766666666
Q ss_pred Hhh
Q psy845 544 RLV 546 (677)
Q Consensus 544 ~~~ 546 (677)
+-.
T Consensus 191 ~~~ 193 (270)
T TIGR02858 191 RSM 193 (270)
T ss_pred HhC
Confidence 553
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-08 Score=110.62 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=72.5
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC---CEecccccHHH-
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID---DFDIASVELET- 509 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id---G~dI~~l~~~~- 509 (677)
.+.++.++++..|..+ ..+++.++ ++.+||+++|+||||||||||++.|+|+.+|+.|.|... |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 4568999999999766 45899986 999999999999999999999999999999999999885 56666543322
Q ss_pred ---hhhhcccccCCcc
Q psy845 510 ---LRSRLSVIPQDPV 522 (677)
Q Consensus 510 ---~~~~i~~v~q~~~ 522 (677)
.++++++++|...
T Consensus 215 ~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 215 ADNLKKAVAVVATSDE 230 (450)
T ss_pred HHhhCCeEEEEEcCCC
Confidence 3468999999764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.9e-09 Score=112.02 Aligned_cols=39 Identities=36% Similarity=0.580 Sum_probs=36.1
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
|-..+|.+|||||||++||.||..||+|+|.+||.|+++
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~ 71 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD 71 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 345689999999999999999999999999999999887
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.7e-05 Score=88.14 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=25.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQI 553 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i 553 (677)
+.+|+||||||||+++|.|+++|++|+|
T Consensus 482 ~IvG~nGsGKSTLl~lL~Gl~~~~~G~i 509 (659)
T TIGR00954 482 LICGPNGCGKSSLFRILGELWPVYGGRL 509 (659)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 5689999999999999999999999963
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=109.63 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=33.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
.+++++.+ ..=||||+.+|+-|..++|.|-||||||||+
T Consensus 606 ~L~l~gA~-------~nNLkni~v~iPLg~~t~VTGVSGSGKSTLI 644 (935)
T COG0178 606 WLELKGAR-------RNNLKNIDVEIPLGVFTCVTGVSGSGKSTLI 644 (935)
T ss_pred eEEEeccc-------ccCcccceeecccccEEEEEecCCCCHHHhH
Confidence 36666553 2359999999999999999999999999999
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-08 Score=100.03 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=33.2
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+.|.+|++++.++|+.++|.|||||||||+++.+.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 46899999999999999999999999999999998
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.4e-05 Score=87.12 Aligned_cols=34 Identities=35% Similarity=0.609 Sum_probs=30.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
..+|++|||||||+.-|.|-++||+|+|.++|.+
T Consensus 368 AIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~ 401 (573)
T COG4987 368 AILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVE 401 (573)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCCeeeECCcC
Confidence 3478999999999999999999999998886654
|
|
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=103.41 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=39.7
Q ss_pred EEeCCCCCccccceeeEEeCCc-----EEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 444 LRYRDNWPLVLANVSFRINHGE-----NIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 444 FsY~~~~~~VLknISl~I~~GE-----~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
++|++- ..-..+..+.|+.|| .+...|++|-||||++++++|..+|++|
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~ 396 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG 396 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence 567654 347888999999985 5778889999999999999998888876
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=9e-08 Score=104.30 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=55.7
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|..+|...+.. ..++++++++|+..+++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t---t~~~~l~~l~~~~~l~D 253 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT---TTHRELHPLPSGGLLID 253 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch---hhhccEEEecCCCeecC
Confidence 46666667889999999999999999999999999999999999987544332 23556666676666665
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-08 Score=101.57 Aligned_cols=55 Identities=36% Similarity=0.501 Sum_probs=49.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhh-hHHHHhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV-ELETLRSRLSVIPQDPV 580 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~LR~~I~~V~Qd~~ 580 (677)
|.+|++|||||||+++|.|+-+|++|+|++||...... ..+..++.+.+|+|||.
T Consensus 37 givGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~ 92 (252)
T COG1124 37 GIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPY 92 (252)
T ss_pred EEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCc
Confidence 78999999999999999999999999999999666554 55588999999999995
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.8e-07 Score=115.22 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=39.4
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHh------cCC---CCCccEEEECCEeccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALF------RLV---ELSSGQIKIDDFDIAS 504 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~------r~y---~p~~G~I~IdG~dI~~ 504 (677)
=|||++++|+-|..+++.|-||||||||++=.+ .+. +.-+--|.||-.+|..
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgr 1565 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQIS 1565 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCC
Confidence 599999999999999999999999999997544 111 2333446777666543
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00022 Score=81.43 Aligned_cols=129 Identities=15% Similarity=0.071 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccc-cch----hHHhhhHHHHHHHhh--hhHH
Q psy845 158 WFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICF-VFPWFA-LPL----LIITTLYHLISKVFR--SVYL 229 (677)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~-~~~~f~-~~~----~~~t~~~~~i~~v~~--s~~l 229 (677)
...+...++..+.-+..+.+-.....+++++.-+.. +|-++-. --..++ .|. ....+..+.+.+-.. ..++
T Consensus 36 ~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~-~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~ 114 (559)
T COG4988 36 FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKV-RASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYY 114 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHH
Confidence 445556777777777777777888888877766653 3333311 114444 452 333344444433332 2345
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy845 230 RSVFQNM-WSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRS 287 (677)
Q Consensus 230 ~~il~~~-~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s 287 (677)
...+... .+++..++++..+.|.=....+++.+-..+++..+.-.....++..+...+
T Consensus 115 ~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~ 173 (559)
T COG4988 115 ARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFS 173 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5555444 455555555555555555556666666666666666555655555554443
|
|
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.3e-05 Score=89.76 Aligned_cols=35 Identities=34% Similarity=0.619 Sum_probs=33.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+.||.+|+||||+++.|+|||+|++|+|.+||.|
T Consensus 497 vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~ 531 (716)
T KOG0058|consen 497 VALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVP 531 (716)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCee
Confidence 36689999999999999999999999999999998
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-05 Score=88.92 Aligned_cols=33 Identities=48% Similarity=0.758 Sum_probs=31.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+++|+|||||||.+++||||+| ++|+|++||.|
T Consensus 382 aIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~d 414 (591)
T KOG0057|consen 382 AIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQD 414 (591)
T ss_pred EEECCCCCCHHHHHHHHHHHhc-cCCcEEECCee
Confidence 5689999999999999999999 99999999997
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-07 Score=91.91 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=26.1
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~ 491 (677)
++.+.+|..+.|+|||||||||+++.+.-..-..
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~ 48 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGA 48 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4445556799999999999999999976544333
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0009 Score=70.74 Aligned_cols=223 Identities=11% Similarity=0.102 Sum_probs=146.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 106 CFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL-MICFVFPWFALPLLIITTLYHLISKVFRSVYLRS 184 (677)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 184 (677)
...-+|.++..+++.++....--++.+.|-...+........+.. -....+.-.+++...+......+.+..+-..+++
T Consensus 21 ~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~ 100 (281)
T PF06472_consen 21 ERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREW 100 (281)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555554444455666666655555544433322 2222333355566666777777888888888888
Q ss_pred HHHHHHHHHHHH-----HhhhccccccccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHH
Q psy845 185 VFQNMWSMLFAF-----LMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL-PLL 258 (677)
Q Consensus 185 ~~q~~~~~~f~~-----~~~~~~~~~f~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal-~~l 258 (677)
+-+++...-+++ +.... +=-|+|.+|+|.|.+...+-..+. ...++..+++++.....+...++++.. .++
T Consensus 101 Lt~~~~~~yl~~~~yY~l~~~~--~~idNpDQRIteDi~~f~~~~~~l-~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~ 177 (281)
T PF06472_consen 101 LTRHLHDRYLSNRTYYRLNNLD--GRIDNPDQRITEDIRKFTESSLSL-FLGLLKPILDLISFSVILWSISGWLGPWAAL 177 (281)
T ss_pred HHHHHHHHHcCCchhHhhhccc--cccccHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 777777643222 21111 112678999999999988755443 355788888877777777777776665 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 259 IITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCS 331 (677)
Q Consensus 259 ~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 331 (677)
.-.++...+.+..++...++..+++...+++.....-..++.+.|-.++.|+.+.++.++..++..+......
T Consensus 178 ~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~ 250 (281)
T PF06472_consen 178 IYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLI 250 (281)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667777777777766667777888888888999999999999999999999888887666554433
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-07 Score=104.60 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=43.6
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE---ECCEeccc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK---IDDFDIAS 504 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~---IdG~dI~~ 504 (677)
.+++++ +++++||+++|+|+||+|||||+++|+|+++|+.+.+- .+|.++++
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~e 198 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKE 198 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHH
Confidence 589999 99999999999999999999999999999999875443 34444443
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-07 Score=92.72 Aligned_cols=50 Identities=34% Similarity=0.450 Sum_probs=44.7
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
...+=+.+.+++|+.++|+|||||||||+++.|+++.+|++|.|.+++.+
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~ 62 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTA 62 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCcc
Confidence 35666677899999999999999999999999999999999999997643
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.1e-07 Score=101.70 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=56.8
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe---ccc-----ccHHHhhhhcccccC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD---IAS-----VELETLRSRLSVIPQ 519 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d---I~~-----l~~~~~~~~i~~v~q 519 (677)
.+++++ +++++||+++|+|+||+|||||+++|+|+++|+.|.|.+.|++ +++ ++.+.+++.+.++.+
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 589999 9999999999999999999999999999999999999995444 443 233456788888864
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0014 Score=72.17 Aligned_cols=33 Identities=36% Similarity=0.563 Sum_probs=31.0
Q ss_pred ccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+|.|||||||+++.|.|||+||+|+|++||..
T Consensus 354 liG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p 386 (546)
T COG4615 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (546)
T ss_pred EECCCCCcHHHHHHHHhcccCCCCCceeECCcc
Confidence 379999999999999999999999999999875
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.33 E-value=4e-07 Score=95.86 Aligned_cols=128 Identities=21% Similarity=0.283 Sum_probs=79.1
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCc-cccccccccC
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLFNGIVGRT 531 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~-~lf~~~~~~n 531 (677)
-....+.+++-|++++|+||.-+=+=|+ ..+-+|++=++.+. ...... .+.+ +-.+-++. ..--+.+|.|
T Consensus 50 ~~~~~~~tlpgG~Rv~i~~~p~~~~g~v----~tIR~~s~~~~r~~-~~~~~~-~~~~---l~~l~~~~~~~~~~i~g~~ 120 (270)
T TIGR02858 50 ELKQGYITIEGGHRVGLAGRCVTENGKV----KTIKNVSSLNIRIA-REKLGA-ADKL---LPYLVRNNRVLNTLIISPP 120 (270)
T ss_pred ccccceEEcCCCcEEEEEccceecCCEE----EEEEcccccEEEec-cccCCc-HHHH---HHHHHhCCCeeEEEEEcCC
Confidence 3566789999999999999964311111 01112222233321 111111 0111 01111111 1122566999
Q ss_pred CCCCchhHHHHHHhhhhccccccccccchhhh-hHHHHhhhcccccccccccccchhhc
Q psy845 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASV-ELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
|||||||+++|.|+.+|++|++.++|.++... +..+++..++++||+..--..++.||
T Consensus 121 g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 121 QCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred CCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc
Confidence 99999999999999999999999999999865 35788888999999763323455555
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.2e-07 Score=98.55 Aligned_cols=41 Identities=34% Similarity=0.389 Sum_probs=32.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCC--Ccc-EEEECCEec
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVEL--SSG-QIKIDDFDI 502 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G-~I~IdG~dI 502 (677)
++|..++|+|||||||||+++.|++.+.+ .+| .|.....++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi 175 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI 175 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc
Confidence 58999999999999999999999999853 333 555444333
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.9e-07 Score=92.49 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=29.7
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++|++|++++. |+.++|+|||||||||++|.+++.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHH
Confidence 35778776654 799999999999999999999763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.5e-07 Score=100.28 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=59.1
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc---cEEEECCEecccccHHHhh----hhcccccCC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS---GQIKIDDFDIASVELETLR----SRLSVIPQD 520 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~---G~I~IdG~dI~~l~~~~~~----~~i~~v~q~ 520 (677)
.+++++ +++.+||+++|+|+||+|||||++.+++..+++. |.|-.+|.+++++..+.++ +++++|...
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 589999 9999999999999999999999999999999988 9999999999887554443 566777543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-07 Score=92.77 Aligned_cols=50 Identities=32% Similarity=0.579 Sum_probs=45.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 576 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~ 576 (677)
|..|+|||||||+++||-.|..||+|++.+||.|... ++...|++||+++
T Consensus 32 GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl~ 81 (245)
T COG4555 32 GLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLF 81 (245)
T ss_pred EEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcceec
Confidence 6789999999999999999999999999999999876 4567899999876
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=84.56 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=31.2
Q ss_pred EEEEEcCCCCChHHHH-HHHhcCCCC-----------------CccEEEECCEecc
Q psy845 466 NIGIVGRTGAGKSSLL-VALFRLVEL-----------------SSGQIKIDDFDIA 503 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi-~LL~r~y~p-----------------~~G~I~IdG~dI~ 503 (677)
+++++|++|||||||+ +++.|.+++ ++|.+.+++.|..
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~ 66 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTA 66 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECC
Confidence 7999999999999999 688888764 4567777777764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-07 Score=98.82 Aligned_cols=55 Identities=40% Similarity=0.628 Sum_probs=49.3
Q ss_pred cccccCCCCCchhHHHHHHhhh-h----ccccccccccchhhhhHHHHh----hhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVE-L----SSGQIKIDDFDIASVELETLR----SRLSVIPQDPV 580 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~-~----~~g~i~~~~~~~~~~~~~~LR----~~I~~V~Qd~~ 580 (677)
|.||++||||||+.++|+||.+ | .+|+|.++|.|+.+++.+++| +.||+|+|||.
T Consensus 35 giVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred EEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 7799999999999999999997 3 789999999999999887654 49999999984
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-07 Score=94.36 Aligned_cols=55 Identities=36% Similarity=0.526 Sum_probs=52.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 580 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~ 580 (677)
..+|-||||||||+++|.|-.+|++|+|.+||.|++..+...=-..++-|+|||-
T Consensus 36 tViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~ 90 (263)
T COG1101 36 TVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL 90 (263)
T ss_pred EEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh
Confidence 3579999999999999999999999999999999999999998899999999995
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.4e-06 Score=95.32 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=57.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
.++-++++-.|..+ ..++++ .+++.+||+++|+|++|+|||||++.|+|..+|+.|.|...|+..+++
T Consensus 130 ~~~r~~i~~~l~TG-iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev 197 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREV 197 (432)
T ss_pred chheechhhccCCC-CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccH
Confidence 45666777777654 358888 499999999999999999999999999999999999998887765554
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-07 Score=94.86 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=46.3
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~ 579 (677)
.-|.+|.|||||||.+.||++|.+|++|+|-.+|.+++ ...+++|||.|.+-
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~----~~~~~rIGyLPEER 81 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRIGYLPEER 81 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh----hhhhhhcccChhhh
Confidence 34889999999999999999999999999999999954 45678999999875
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.5e-07 Score=87.16 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
|+.++|+|||||||||++++|++...| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 889999999999999999999998765 5888888887655556677888888873
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.1e-07 Score=96.23 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=50.0
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCc-------EEEEEcCCCCChHHHHHHHhcC
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGE-------NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE-------~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
..|.++++|++|+|+ ..+++++++++++++|| ++++||++|+|||||++.+.+-
T Consensus 15 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 15 FKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 568999999999999 44679999999999999 9999999999999999999875
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-06 Score=83.21 Aligned_cols=26 Identities=42% Similarity=0.496 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
|+.++|+|||||||||+++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.9e-07 Score=94.49 Aligned_cols=37 Identities=41% Similarity=0.643 Sum_probs=34.5
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
=+.+.+|.||||||||+|+|.|+.+|++|+|++||.+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~ 65 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKD 65 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCc
Confidence 3567899999999999999999999999999999987
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.7e-06 Score=89.84 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=28.1
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++++..+| ...|+|||||||||++.++..+
T Consensus 14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l 46 (361)
T PRK00064 14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYLL 46 (361)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHHh
Confidence 45678888888 8899999999999999998753
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.2e-07 Score=88.45 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=31.5
Q ss_pred cccccCCCCCchhHHHHHHhhh---hccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~---~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+++ |++|+|.+||.+
T Consensus 37 ~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 37 LVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred EEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 5689999999999999999999 899999999864
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.8e-06 Score=94.69 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=58.3
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
++|++..|++. .+++++++.+..|+.++++||+||||||+++.|.|+.+|.+|++.+++..|.++
T Consensus 187 ~~d~~~v~Gq~--~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 187 QHDLSDVIGQE--QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred ccCeEEEECcH--HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 45777778643 599999999999999999999999999999999999999999999998887665
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.3e-07 Score=88.79 Aligned_cols=42 Identities=31% Similarity=0.481 Sum_probs=37.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.++.+.+...
T Consensus 32 ~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 32 FLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH
Confidence 568999999999999999999999999999999887665544
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-06 Score=107.32 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=59.9
Q ss_pred ccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC-CCCCCChHHHH------HHHHHHHHhccchhh
Q psy845 581 LFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV-QGDQLSLGEKQ------LLCLARALLRKTKKK 651 (677)
Q Consensus 581 LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v-~G~~LSGGQRQ------RIaIARALLr~p~IL 651 (677)
.|+||++|||.+..+++++ ++|++.++.++|+..+|.| ||.+ ...+||||||| |++||||++++|+++
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 3799999999984455555 7899999999999999999 9988 45699999999 999999999999977
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.3e-06 Score=84.59 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=29.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCC-ccEEEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELS-SGQIKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~-~G~I~IdG~dI 502 (677)
.+.|+|||||||||+++.+++.+++. +|.|...+.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 68999999999999999999988754 56766654444
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-06 Score=87.82 Aligned_cols=43 Identities=30% Similarity=0.523 Sum_probs=37.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L 568 (677)
+.+|.||||||||+++|.|+++|++|+|.+||.++...+....
T Consensus 31 ~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 31 FLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHH
Confidence 5689999999999999999999999999999998876655443
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-06 Score=94.55 Aligned_cols=62 Identities=26% Similarity=0.456 Sum_probs=52.2
Q ss_pred CccccceeeEE---eCCcE-----EEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhh
Q psy845 451 PLVLANVSFRI---NHGEN-----IGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 451 ~~VLknISl~I---~~GE~-----VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~ 512 (677)
..++++++..+ ++|+. +||+|++||||||+++.|.++.++. .|.|.+||..+...+..++++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 35889999888 67887 9999999999999999999999875 588999999987655555544
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.6e-07 Score=86.99 Aligned_cols=35 Identities=40% Similarity=0.607 Sum_probs=33.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.++
T Consensus 22 ~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 56 (190)
T TIGR01166 22 ALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL 56 (190)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEc
Confidence 67899999999999999999999999999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.3e-06 Score=82.52 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=41.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcc
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 522 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~ 522 (677)
+||.++++|+|||||||+++.|+++..+ +.+||.++.... ..-+...|+.+|+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~-~~r~~~~g~~~~~~~ 56 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAK-NIDKMSQGIPLTDED 56 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHh-HHHHHhcCCCCCccc
Confidence 6999999999999999999999999877 588998875431 112223556666543
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.6e-06 Score=78.91 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=58.3
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhh
Q psy845 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLV 546 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~ 546 (677)
++|+|||||||||+++.|++.+++.-+.+. ... -.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v------~~t---------------------------------------Tr 36 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSV------SHT---------------------------------------TR 36 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecc------ccc---------------------------------------cc
Confidence 789999999999999999999865433221 000 01
Q ss_pred hhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHH
Q psy845 547 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALE 606 (677)
Q Consensus 547 ~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~ 606 (677)
+|..|+ .+|.++.-.+.++.++. +.|+.++..++...|. + ....+++.++.+
T Consensus 37 ~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~~-y--g~~~~~i~~~~~ 88 (137)
T cd00071 37 KPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGNY-Y--GTSKAAVEEALA 88 (137)
T ss_pred CCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCEE-e--cCcHHHHHHHHh
Confidence 344454 47777777777777764 6688889999998885 2 233455555443
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-06 Score=90.96 Aligned_cols=36 Identities=42% Similarity=0.657 Sum_probs=33.6
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
|...||.+||||||++|||.||++|++|+|++||+|
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~ 64 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED 64 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee
Confidence 445789999999999999999999999999999998
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-06 Score=85.45 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=44.3
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
++|+.+||+|||||||||+++.|++.+++ ..+.+..|+.-... +....+++.++.+|+|..++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 67 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQ-SHLEMAERKKTNFDHPDAFD 67 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccCh-hhCCHHHhcCCCCCCccHhH
Confidence 57999999999999999999999999876 33445555542211 11123556777888776665
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-06 Score=87.96 Aligned_cols=43 Identities=40% Similarity=0.590 Sum_probs=38.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L 568 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.++...+....
T Consensus 34 ~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 34 AIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred EEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHH
Confidence 6789999999999999999999999999999998776655543
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-06 Score=94.01 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=47.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg 584 (677)
-+.+|+||||||||+++|+|+.+|++|+|++||.++.+.+.+++++.-. +-.++|+.
T Consensus 50 ~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~---~i~~v~Q~ 106 (331)
T PRK15079 50 LGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS---DIQMIFQD 106 (331)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhC---ceEEEecC
Confidence 3678999999999999999999999999999999999888877776432 33455544
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-06 Score=87.13 Aligned_cols=34 Identities=44% Similarity=0.590 Sum_probs=31.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 31 ~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 64 (211)
T cd03225 31 LIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD 64 (211)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 5689999999999999999999999999998865
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.5e-06 Score=94.24 Aligned_cols=53 Identities=26% Similarity=0.393 Sum_probs=43.6
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECC---Eecccc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDD---FDIASV 505 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG---~dI~~l 505 (677)
.+++++ +++.+||+++|+|+||+|||||++.++|..++ +.|.|...| .++.++
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~ 209 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREF 209 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHH
Confidence 478887 99999999999999999999999999998843 446777644 555554
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.5e-06 Score=80.61 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=46.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE-----------CCEecccccHHHhh-----hhcccccCCcccccc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI-----------DDFDIASVELETLR-----SRLSVIPQDPVLFNG 526 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I-----------dG~dI~~l~~~~~~-----~~i~~v~q~~~lf~~ 526 (677)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+.++.. .+++.+.|.+.++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 54544 66666666555543 348888888777664
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.3e-06 Score=85.40 Aligned_cols=34 Identities=44% Similarity=0.627 Sum_probs=31.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|.|+++|++|+|.++|.+
T Consensus 30 ~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (178)
T cd03229 30 ALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED 63 (178)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 6789999999999999999999999999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.7e-06 Score=90.47 Aligned_cols=65 Identities=26% Similarity=0.437 Sum_probs=50.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc--CCCCCccEEEECCEec
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR--LVELSSGQIKIDDFDI 502 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r--~y~p~~G~I~IdG~dI 502 (677)
+|.++|.+.+-.+. ...-|-|++|-.|.++|+|||+|-|||||++-+.. +--|..=.+++..+++
T Consensus 264 DIKiEnF~ISA~Gk--~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv 330 (807)
T KOG0066|consen 264 DIKIENFDISAQGK--LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV 330 (807)
T ss_pred cceeeeeeeecccc--eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence 58888888776554 57889999999999999999999999999998863 3334444555555444
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.4e-06 Score=87.33 Aligned_cols=42 Identities=26% Similarity=0.491 Sum_probs=37.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.++...+..+
T Consensus 33 ~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 33 FLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhH
Confidence 568999999999999999999999999999999877655443
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-06 Score=87.90 Aligned_cols=42 Identities=31% Similarity=0.509 Sum_probs=37.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
+.+|+||||||||+++|.|+++|++|+|.++|.++...+.+.
T Consensus 40 ~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 40 ALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHH
Confidence 568999999999999999999999999999999887666544
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-06 Score=87.01 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=31.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 30 ~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 63 (213)
T cd03259 30 ALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRD 63 (213)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 5689999999999999999999999999998875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-07 Score=111.16 Aligned_cols=159 Identities=17% Similarity=0.096 Sum_probs=88.6
Q ss_pred cHHHHHHHHHchHHHHHHhccHHHHHHHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 288 PIFSNVSSTVSGLHIIHVFHKEQDFVRRF-----CEQYDENSTTLFLCSM----AMRWLAVRIDVLAVIAMAIITGLTVA 358 (677)
Q Consensus 288 ~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~l~~~l~~g~~lv 358 (677)
...+.+.|.+.|+.+||..+.|+.....+ .+...+..+....... ...+... +.... ..+++++|.+++
T Consensus 41 ~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~-i~~~~-~~~il~ig~~~v 118 (644)
T PRK10733 41 VNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLAS-IFISW-FPMLLLIGVWIF 118 (644)
T ss_pred HHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHH-HHHHH-HHHHHHHHHHHH
Confidence 34567888899999999998877554444 2222222221111000 0111111 11111 244566777788
Q ss_pred HhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCc
Q psy845 359 FHGSVSPA---LAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQG 435 (677)
Q Consensus 359 ~~G~ls~g---~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g 435 (677)
..|.++.| .+..+..+...+..+ ......+.++.....+.+|+.++.+. ..+ + .
T Consensus 119 ~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~-~~~---~----------------~-- 175 (644)
T PRK10733 119 FMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEY-LRE---P----------------S-- 175 (644)
T ss_pred HHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHH-hhC---H----------------H--
Confidence 88887766 333333334444444 44555566666666777777776631 100 0 0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
..+++..++++| +.++||+|+||||+++.+++-...
T Consensus 176 -----------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 176 -----------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred -----------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 001112245566 999999999999999999996653
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.3e-06 Score=92.64 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=59.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+.++.++++-.+..+ ..+++++ +++.+||+++|+|++|+|||||++.++|..+++.|.+...|..-+++
T Consensus 128 ~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv 196 (433)
T PRK07594 128 PAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV 196 (433)
T ss_pred CceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHH
Confidence 357778888888655 3599999 99999999999999999999999999999999999988877665554
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.7e-06 Score=86.55 Aligned_cols=36 Identities=44% Similarity=0.692 Sum_probs=33.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.-+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 62 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQD 62 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCc
Confidence 447789999999999999999999999999998864
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.4e-06 Score=80.69 Aligned_cols=34 Identities=50% Similarity=0.655 Sum_probs=31.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|.|+++|++|+|.++|.+
T Consensus 15 ~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~ 48 (137)
T PF00005_consen 15 AIVGPNGSGKSTLLKALAGLLPPDSGSILINGKD 48 (137)
T ss_dssp EEEESTTSSHHHHHHHHTTSSHESEEEEEETTEE
T ss_pred EEEccCCCccccceeeeccccccccccccccccc
Confidence 5679999999999999999999999999988776
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5e-06 Score=94.78 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 54 gIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~ 87 (549)
T PRK13545 54 GIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA 87 (549)
T ss_pred EEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence 5689999999999999999999999999999854
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.9e-06 Score=85.86 Aligned_cols=55 Identities=35% Similarity=0.515 Sum_probs=50.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 580 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~ 580 (677)
+.||+||+|||||+|||.|.++|.+|+|+++|....--+...--++|-+++|||.
T Consensus 43 aiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn 97 (267)
T COG4167 43 AIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN 97 (267)
T ss_pred EEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc
Confidence 5689999999999999999999999999999998887777777789999999994
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.7e-06 Score=85.88 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=35.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 564 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.+++..+
T Consensus 28 ~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~ 66 (206)
T TIGR03608 28 AIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLN 66 (206)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc
Confidence 568999999999999999999999999999999876554
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.7e-06 Score=86.60 Aligned_cols=32 Identities=47% Similarity=0.726 Sum_probs=29.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
+.+|.||||||||+++|.|+.+|++|+|.+||
T Consensus 29 ~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 60 (213)
T cd03235 29 AIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 (213)
T ss_pred EEECCCCCCHHHHHHHHcCCCCCCCCEEEECC
Confidence 56899999999999999999999999988865
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 677 | ||||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-16 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-13 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-16 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-11 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-16 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-09 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-14 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 6e-14 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-13 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-13 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 7e-13 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 7e-13 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 7e-13 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-05 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 7e-13 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 7e-13 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-12 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-05 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-12 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-08 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-10 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 7e-06 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-10 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-10 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 8e-07 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 9e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-08 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-06 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-04 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-04 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-04 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-04 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 9e-04 |
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 9e-75
Identities = 71/278 (25%), Positives = 108/278 (38%), Gaps = 90/278 (32%)
Query: 429 ADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488
WP G + K+++ +Y + +L N+SF I+ G+ +G++GRTG+GKS+LL A RL+
Sbjct: 12 DIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71
Query: 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL 548
+ G+I+ID S+ LE R VIPQ +F+G
Sbjct: 72 N-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG---------------------- 108
Query: 549 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKS 608
T R NLDP D E+W ++
Sbjct: 109 ------------------TFR------------------KNLDPNAAHSDQEIWKVADEV 132
Query: 609 HLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRKTK----------------- 649
L+S + KLD + G LS G KQL+CLAR++L K K
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 650 -------KKKKSGVNIT-----RPVTSCDKVLVMDNGQ 675
+ I + CD+ LV++ +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENK 230
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 6e-33
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 64/219 (29%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
++G I+F+NV Y D L +VSF + G++ +A
Sbjct: 49 FQKGRIEFENVHFSYADGRE-TLQDVSFTVM------------PGQT---LA-------- 84
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSG 551
+VG +GAGKS++L LFR ++SSG
Sbjct: 85 -----------------------------------LVGPSGAGKSTILRLLFRFYDISSG 109
Query: 552 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH--DTELWDALEKSH 609
I+ID DI+ V +LRS + V+PQD VLFN TI N+ +GR + E+ A + +
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNI-RYGRVTAGNDEVEAAAQAAG 168
Query: 610 LKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLR 646
+ ++ + V +G +LS GEKQ + +AR +L+
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-31
Identities = 69/302 (22%), Positives = 134/302 (44%), Gaps = 15/302 (4%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
L +++ + +++ A ++ F+ L L I Y L VF +R+L R + + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAE 198
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIA 348
+ + V G+ ++ F E + + F ++ T + + I+ + I
Sbjct: 199 VQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIG 258
Query: 349 MAIIT--GLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNC- 405
I+ G +A GS++ + Y + G L+ V F +F +++R+
Sbjct: 259 PIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318
Query: 406 -SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHG 464
+ G G E +QG I +VS +Y DN +L +++ I G
Sbjct: 319 DEDYDIKNGVGAQPIE-----------IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG 367
Query: 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
E + VG +G GKS+L+ + R +++SGQI ID +I +LR+++ ++ QD +LF
Sbjct: 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF 427
Query: 525 NG 526
+
Sbjct: 428 SD 429
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 5e-22
Identities = 40/125 (32%), Positives = 72/125 (57%), Gaps = 5/125 (4%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
VG +G GKS+L+ + R +++SGQI ID +I +LR+++ ++ QD +LF+ T
Sbjct: 371 AFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 430
Query: 586 IRYNLDPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLA 641
++ N+ GR D E+ +A + ++ ++ + D++V G +LS G+KQ L +A
Sbjct: 431 VKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489
Query: 642 RALLR 646
R L
Sbjct: 490 RIFLN 494
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 4e-31
Identities = 53/302 (17%), Positives = 129/302 (42%), Gaps = 17/302 (5%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
L +V + S++ F+M+ + ++ L+++ + + +V R + + +
Sbjct: 143 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 202
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIA 348
+ ++ + G + +F ++ +RF + ++ A I ++A +A
Sbjct: 203 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 262
Query: 349 MAIIT--GLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNC- 405
+A + + S++ + + + L+ V + + A + +
Sbjct: 263 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 322
Query: 406 -SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHG 464
S++ EG+ I G ++F+NV+ Y L N++ +I G
Sbjct: 323 DSEQEKDEGKRVID-------------RATGDLEFRNVTFTYPGREVPALRNINLKIPAG 369
Query: 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
+ + +VGR+G+GKS++ + R ++ G I +D D+ L +LR++++++ Q+ LF
Sbjct: 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLF 429
Query: 525 NG 526
N
Sbjct: 430 ND 431
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-23
Identities = 37/125 (29%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VGR+G+GKS++ + R ++ G I +D D+ L +LR++++++ Q+ LFN T+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433
Query: 587 RYNLDPFGRCH---DTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
N+ + R ++ +A ++ + M + LD+ + G LS G++Q + +A
Sbjct: 434 ANNI-AYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492
Query: 642 RALLR 646
RALLR
Sbjct: 493 RALLR 497
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-30
Identities = 87/436 (19%), Positives = 180/436 (41%), Gaps = 100/436 (22%)
Query: 229 LRSVFQNMWSMLFAFLM---ICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVS 285
+R+ + ++ A + + V F +P +++ L K + + + + V+
Sbjct: 145 VRAPLLFVGGIVMAVSINVKLSSVL-IFLIPPIVLL-FVWLTKKGNPLFRKIQESTDEVN 202
Query: 286 RSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE------NSTTLFLCSMAMRWLAV 339
R V + G+ ++ F +E+ F + + ++ +L + ++ + V
Sbjct: 203 RV-----VRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIV 257
Query: 340 RIDVLAVI---AMAIITG-LTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELN 395
+ ++AV+ + + + + GS+ A Y + L +
Sbjct: 258 NMGMIAVLWFGGVLVRNNQMEI---GSIM-AY----TNYLMQIMFSLMMIGNILNFIVRA 309
Query: 396 FLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLA 455
+ +R+ V + I + + +G++ F+NV RY +N VL+
Sbjct: 310 SASAKRVLE-----VLNEKPAIEEADNALALP----NVEGSVSFENVEFRYFENTDPVLS 360
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515
V+F + G + ++G TG+GKS+ L+ L
Sbjct: 361 GVNFSVKPGSLVAVLGETGSGKST-------LMNL------------------------- 388
Query: 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 575
IP RL++ G++++D+ D+ +V+L+ LR +S +
Sbjct: 389 -IP-------------------------RLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 576 PQDPVLFNGTIRYNLDPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLS 631
PQ+ VLF+GTI+ NL +GR D E+ +A + + + ++++ DS V+ G S
Sbjct: 423 PQETVLFSGTIKENLK-WGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481
Query: 632 LGEKQLLCLARALLRK 647
G+KQ L +ARAL++K
Sbjct: 482 GGQKQRLSIARALVKK 497
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 117 bits (297), Expect = 5e-30
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I F+N+ RY+ + P++L N++ I GE IGIVGR+G+GKS+L + R +G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV------GRTGA 533
Q+ ID D+A + LR ++ V+ QD VL N + G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 110
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 99.9 bits (250), Expect = 8e-24
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GIVGR+G+GKS+L + R +GQ+ ID D+A + LR ++ V+ QD VL N +
Sbjct: 39 GIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRS 98
Query: 586 IRYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
I N+ + ++ A + + + +R ++ V QG LS G++Q + +A
Sbjct: 99 IIDNI-SLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157
Query: 642 RALLR 646
RAL+
Sbjct: 158 RALVN 162
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 7e-30
Identities = 53/312 (16%), Positives = 120/312 (38%), Gaps = 37/312 (11%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
L S+ + S++ ++ + +L L+++ + R++ R +
Sbjct: 143 LVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGH 202
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVR----IDVL 344
+ S+ + G ++ + ++ +RF D+ S ++ +M + I ++
Sbjct: 203 VTSSAEQMLKGHKVVLSYGGQEVERKRF----DKVSNSMRQQTMKLVSAQSIADPVIQMI 258
Query: 345 AVIAMAIIT--GLTVAFHGSVSPALAGLALTYASHVTGLLQFT------VRVFVETELNF 396
A +A+ + + ++P T+ + + V E +
Sbjct: 259 ASLALFAVLFLASVDSIRAELTPG------TFTVVFSAMFGLMRPLKALTSVTSEFQRGM 312
Query: 397 LAVERINNC--SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVL 454
A + + + G+ G + K+V+ Y+ L
Sbjct: 313 AACQTLFGLMDLETERDNGKYEAE-------------RVNGEVDVKDVTFTYQGKEKPAL 359
Query: 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514
++VSF I G+ + +VGR+G+GKS++ R ++ SG I +D D+ +L LR
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 515 SVIPQDPVLFNG 526
+++ Q+ LFN
Sbjct: 420 ALVSQNVHLFND 431
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-23
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VGR+G+GKS++ R ++ SG I +D D+ +L LR +++ Q+ LFN TI
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Query: 587 RYNLDPFGRCHDT---ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
N+ + + ++ A ++H + M LD+ + G LS G++Q + +A
Sbjct: 434 ANNI-AYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492
Query: 642 RALLR 646
RALLR
Sbjct: 493 RALLR 497
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 8e-29
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 65/215 (30%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ ++V Y D+ +L ++SF +A
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQ------------PNSI---IAF------------ 33
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKID 556
G +G GKS++ L R + ++G+I ID
Sbjct: 34 -------------------------------AGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 557 DFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDT---ELWDALEKSHLKSK 613
I ++ LE RS++ + QD + GTIR NL +G D +LW L+ + +S
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL-TYGLEGDYTDEDLWQVLDLAFARSF 121
Query: 614 VVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLR 646
V M +L+++V +G ++S G++Q L +ARA LR
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 65/218 (29%)
Query: 434 QGTIKFKNVSLRYRDNWP-LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
I+F +V+ Y L +++F I +G + A
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIP------------SGTT---CA--------- 50
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552
+VG TG+GKS++ L+R + G
Sbjct: 51 ----------------------------------LVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH--DTELWDALEKSHL 610
IKI ++ ++RS + ++PQD +LFN TI+YN+ +G+ D E+ A + + L
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI-LYGKLDATDEEVIKATKSAQL 134
Query: 611 KSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLR 646
+ + K D+ V +G +LS GE+Q + +AR LL+
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-28
Identities = 105/611 (17%), Positives = 211/611 (34%), Gaps = 181/611 (29%)
Query: 96 WSMLFAFLMIC---FVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQ------NMWSML 146
+ + P F++ + SKV + N++S+L
Sbjct: 705 PYFVVGIFCAIINGGLQPAFSV----------IFSKVVGVFTNGGPPETQRQNSNLFSLL 754
Query: 147 FAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVF-QNMWSMLFAFLMICFVFPW 205
F L I +F L ++ R + +S+ Q++ W
Sbjct: 755 FLILGIISFITFFLQGFTFGKAGEILTKRL-RYMVFKSMLRQDV--------------SW 799
Query: 206 FALPL----LIITTLYHLISKV--FRSVYLRSVFQNMWSMLFAFLMICFVFPW------- 252
F P + T L + ++V L +FQN+ ++ + I ++ W
Sbjct: 800 FDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGII-ISLIYGWQLTLLLL 858
Query: 253 FALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDF 312
+P++ I + + + A+++ K +E + + + +EQ F
Sbjct: 859 AIVPIIAIAGVVEMKM-LSGQALKDKKELEGSG-----KIATEAIENFRTVVSLTREQKF 912
Query: 313 VRRFCEQYDE-------------------NSTTLFLCSMAMRWLAVRI--------DVLA 345
+ + + F + A R+ A + +VL
Sbjct: 913 ETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLL 972
Query: 346 VIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNC 405
V + + + V S +P A A ASH+ +++ I++
Sbjct: 973 VFSAIVFGAMAVGQVSSFAPDYAK-ATVSASHIIRIIE--------------KTPEIDSY 1017
Query: 406 SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRY--RDNWPLVLANVSFRINH 463
S +G P E G ++F V Y R + P VL +S +
Sbjct: 1018 S----TQGLKPNMLE--------------GNVQFSGVVFNYPTRPSIP-VLQGLSLEVK- 1057
Query: 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 523
G++ +AL
Sbjct: 1058 -----------KGQT---LAL--------------------------------------- 1064
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
VG +G GKS+++ L R + +G + +D +I + ++ LR++L ++ Q+P+LF+
Sbjct: 1065 ----VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 584 GTIRYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638
+I N+ D E+ A +++++ + ++ K ++ V +G QLS G+KQ +
Sbjct: 1121 CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180
Query: 639 CLARALLRKTK 649
+ARAL+R+
Sbjct: 1181 AIARALVRQPH 1191
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-19
Identities = 98/602 (16%), Positives = 190/602 (31%), Gaps = 167/602 (27%)
Query: 98 MLFAFLMICF-----VFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMI 152
+ +M+ F F T + + + + ++ + +
Sbjct: 62 VALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEM--TTYAYYYTGIGA 119
Query: 153 C-FVFPWFALPLLIITTLYHLISKVFRSVYLRSVF-QNMWSMLFAFLMICFVFPWFAL-- 208
+ + + + R + ++ Q + WF +
Sbjct: 120 GVLIVAYIQVSFWCLAAGR--QIHKIRQKFFHAIMNQEI--------------GWFDVHD 163
Query: 209 PLLIITTLYHLISKV--FRSVYLRSVFQNMWSMLFAFLMICFVFPW------FALPLLII 260
+ T L +SK+ + FQ M + F +I F W A+ ++
Sbjct: 164 VGELNTRLTDDVSKINEGIGDKIGMFFQAM-ATFFGGFIIGFTRGWKLTLVILAISPVLG 222
Query: 261 TTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQY 320
+ + +EL + ++ + + F ++ + R+
Sbjct: 223 LSAGIWAKILSSFTDKELHAYAKAG-----AVAEEVLAAIRTVIAFGGQKKELERYNNNL 277
Query: 321 DE--------------NSTTLFLCSMAMR----WLAVRI---------DVLAVIAMAIIT 353
+E + FL A W + VL V +++
Sbjct: 278 EEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF-FSVLI 336
Query: 354 GLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEG 413
G G SP + A + VF + I+N
Sbjct: 337 GAFSV--GQASPNIEAFANARGA--------AYEVF----------KIIDNKPSIDSFSK 376
Query: 414 RGPITSEFGQVKVKLADWPRQGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVG 471
G QG ++FKN+ Y R +L ++ ++
Sbjct: 377 SGHKPDNI------------QGNLEFKNIHFSYPSRKEVQ-ILKGLNLKVK--------- 414
Query: 472 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
+G++ VAL VG +
Sbjct: 415 ---SGQT---VAL-------------------------------------------VGNS 425
Query: 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591
G GKS+ + + RL + G + ID DI ++ + LR + V+ Q+PVLF TI N+
Sbjct: 426 GCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR 485
Query: 592 PFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647
+GR T E+ A+++++ ++ + + D+ V +G QLS G+KQ + +ARAL+R
Sbjct: 486 -YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544
Query: 648 TK 649
K
Sbjct: 545 PK 546
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-23
Identities = 65/318 (20%), Positives = 131/318 (41%), Gaps = 49/318 (15%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
+ F + ++ A +M+ V +L L I L LI+++ R+
Sbjct: 155 IIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQ 214
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQ----YDENSTTLFLCSMAMRWLAVRIDVL 344
+ + +SGL +I +F +E+ + +F + + + + ++ L
Sbjct: 215 LNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNM-VNNL 273
Query: 345 AVIAMAIITGLTVAFHGSVSPALAGLA--LTYA----------SHVTGLLQFTV----RV 388
++ G ++ + +A + Y+ S+ ++Q + R+
Sbjct: 274 GFALISGFGGWLAL-KDIIT--VGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERI 330
Query: 389 FVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRD 448
F L +E E P E +V+ G I+FKNV Y
Sbjct: 331 F-----EILDLE----------EEKDDPDAVELREVR---------GEIEFKNVWFSYDK 366
Query: 449 NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 508
P+ L +++F I G+ + +VG TG+GK++++ L R ++ GQI +D DI ++
Sbjct: 367 KKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS 425
Query: 509 TLRSRLSVIPQDPVLFNG 526
+LRS + ++ QD +LF+
Sbjct: 426 SLRSSIGIVLQDTILFST 443
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 7e-21
Identities = 38/123 (30%), Positives = 71/123 (57%), Gaps = 5/123 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG TG+GK++++ L R ++ GQI +D DI ++ +LRS + ++ QD +LF+ T+
Sbjct: 386 LVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTV 445
Query: 587 RYNLDPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDVQGD--QLSLGEKQLLCLAR 642
+ NL +G D E+ +A + +H + + ++ + + LS G++QLL + R
Sbjct: 446 KENL-KYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504
Query: 643 ALL 645
A L
Sbjct: 505 AFL 507
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 2e-22
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 67/223 (30%)
Query: 434 QGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+G +KF++VS Y N VL ++F + GK AL
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLY------------PGKV---TAL------- 50
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSG 551
VG G+GKS++ L L + + G
Sbjct: 51 ------------------------------------VGPNGSGKSTVAALLQNLYQPTGG 74
Query: 552 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR---CHDTELWDALEKS 608
++ +D + + L ++++ + Q+P+LF + R N+ +G E+ +S
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAMES 133
Query: 609 HLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK 649
+ D++V G+QLS G++Q + LARAL+RK +
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPR 176
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 8e-16
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+ +NV+ + + VL +++F+I G+ + + G TGAGK+SLL+ + +E S G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+IK R+S Q + G +
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTI 85
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-12
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 45/172 (26%)
Query: 490 LSSGQIKIDDFDIA--SVELETLRS-RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLV 546
L++ ++ +++ L+ + + + G TGAGK+SLL+ + +
Sbjct: 2 LTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLL---AVAGSTGAGKTSLLMMIMGEL 58
Query: 547 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN-LDPFGRCHDTELWDAL 605
E S G+IK R+S Q + GTI+ N + FG +D + +
Sbjct: 59 EPSEGKIKH-------------SGRISFCSQFSWIMPGTIKENII--FGVSYDEYRYRS- 102
Query: 606 EKSHLKSKVVTMRSKLDSDVQ----GDQ---------LSLGEKQLLCLARAL 644
V +L+ D+ D LS G++ + LARA+
Sbjct: 103 ---------VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV 145
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 8e-15
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
+I +N + + + P L ++F I G + +VG+ G GKSSLL AL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+ I + ++ +PQ + N +
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSL 82
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 33/130 (25%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+VG+ G GKSSLL AL ++ G + I + ++ +PQ + N +
Sbjct: 35 AVVGQVGCGKSSLLSALLAEMDKVEGHVAI-------------KGSVAYVPQQAWIQNDS 81
Query: 586 IRYN-LDPFGRCHDTEL-WDALEKSHLKSKVVTMRSKLDSDVQGDQ---------LSLGE 634
+R N L FG + ++ L L+ GD+ LS G+
Sbjct: 82 LRENIL--FGCQLEEPYYRSVIQACALL-------PDLEILPSGDRTEIGEKGVNLSGGQ 132
Query: 635 KQLLCLARAL 644
KQ + LARA+
Sbjct: 133 KQRVSLARAV 142
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 397 LAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLAN 456
+ +E + EG G + + Q ++ F N SL VL +
Sbjct: 5 VVMENVT----AFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLL----GTPVLKD 56
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516
++F+I G+ + + G TGAGK+SLL+ + +E S G+IK R+S
Sbjct: 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISF 103
Query: 517 IPQDPVLFNGIV 528
Q+ + G +
Sbjct: 104 CSQNSWIMPGTI 115
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 9e-12
Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 80/199 (40%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+ G TGAGK+SLL+ + +E S G+IK R+S Q+ + GT
Sbjct: 68 AVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQNSWIMPGT 114
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ----GDQ---------LSL 632
I+ N+ G +D + + V +L+ D+ D LS
Sbjct: 115 IKENI--IGVSYDEYRYRS----------VIKACQLEEDISKFAEKDNIVLGEGGITLSG 162
Query: 633 GEKQLLCLARAL----------------------------LRKTKKKKKSGVNITRP-VT 663
G++ + LARA+ + K K TR VT
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK------TRILVT 216
Query: 664 -------SCDKVLVMDNGQ 675
DK+L++ G
Sbjct: 217 SKMEHLKKADKILILHEGS 235
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 8e-14
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ + + +L +S++I G+ + G GAGK++LL L +SG +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 497 IDDFDIASV--ELETLRSRLSVIPQD 520
+ V ET+R + +
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHS 105
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 6e-09
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 25/135 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV--ELETLRSRLSVIPQDPVLFN 583
+ G GAGK++LL L +SG + + V ET+R + +
Sbjct: 51 ILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHS----- 105
Query: 584 GTIRYNLDPFGRCHDT---------ELWDALEKSHLKS-----KVVTMRSKLDSDVQGDQ 629
+ R D ++ ++ K+V M +K +
Sbjct: 106 --LLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG--Y 161
Query: 630 LSLGEKQLLCLARAL 644
LS GEKQ + +ARAL
Sbjct: 162 LSTGEKQRVMIARAL 176
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 9e-14
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K + ++ Y D L ++ I GE I+G G GKS+L +++ SSG+I
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 497 IDDFDIASVE--LETLRSRLSVIPQDP 521
D+ I + LR + ++ QDP
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDP 93
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 52/195 (26%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE--LETLRSRLSVIPQDPV- 580
I+G G GKS+L +++ SSG+I D+ I + LR + ++ QDP
Sbjct: 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDN 95
Query: 581 -LFNGTIR-------YNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632
LF+ ++ N+ + E+ ++ + K + D LS
Sbjct: 96 QLFSASVYQDVSFGAVNMK----LPEDEIRKRVDNA---LKRTGIEHLKDKPTH--CLSF 146
Query: 633 GEKQLLCLA-----------------------RALLRKTKKKKKSGVNITRPVTS----- 664
G+K+ + +A + + K + + + IT + +
Sbjct: 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206
Query: 665 ----CDKVLVMDNGQ 675
CD V VM G+
Sbjct: 207 VPLYCDNVFVMKEGR 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 437 IKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I+ NVS + PL L NVS IN GE + + G TG+GKS+LL + L+E +SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDP 521
+ D + +R + + Q P
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYP 87
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 59/196 (30%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--L 581
+ G TG+GKS+LL + L+E +SG + D + +R + + Q P
Sbjct: 35 CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK---KGYEIRRNIGIAFQYPEDQF 91
Query: 582 FNGTIR-------YNLDPFGRCHDTELW----DALEKSHLKSKVVTMRSKLDSDVQGDQL 630
F + N P D + A+E L R L
Sbjct: 92 FAERVFDEVAFAVKNFYP-----DRDPVPLVKKAMEFVGLDFDSFKDRVPFF-------L 139
Query: 631 SLGEKQLLCLA---------------------------RALLRKTKKKKKSGVNIT---- 659
S GEK+ + +A ++ K K K+ + I+
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199
Query: 660 RPVTSCDKVLVMDNGQ 675
+ D+V+V++ G+
Sbjct: 200 TVINHVDRVVVLEKGK 215
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
IK N++ + + A NVS + G+ G++G +GAGKS+L+ + L + G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 495 IKIDDFDIASV---ELETLRSRLSVIPQDPVLFNGIVGRT 531
+ +D ++ ++ EL R ++ +I Q FN + RT
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQH---FNLLSSRT 121
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 68/201 (33%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLF 582
G++G +GAGKS+L+ + L + G + +D ++ ++ EL R ++ +I Q F
Sbjct: 58 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQH---F 114
Query: 583 N----GTIRYNLDPFGRCHDTELWDALEKSHLKSKV------VTMRSKLDSDVQGDQLSL 632
N T+ N+ EL + K +K +V V + K DS LS
Sbjct: 115 NLLSSRTVFGNV-----ALPLELDN-TPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSG 166
Query: 633 GEKQLLCLARAL---------------------------LRKTKKKKKSGVNIT------ 659
G+KQ + +ARAL L+ ++ + +T
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR----LGLTILLITH 222
Query: 660 -----RPVTSCDKVLVMDNGQ 675
+ + CD V V+ NG+
Sbjct: 223 EMDVVKRI--CDCVAVISNGE 241
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 81/214 (37%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ +N+ Y + ++F +N G+ + ++G+ G GKS+LL L + G+I+
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKID 556
+ + +PQ
Sbjct: 64 VY-------------QSIGFVPQFFSS--------------------------------- 77
Query: 557 DFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR--CHDTEL-WDALEK---SHL 610
F SV D VL G + ++ F + HD ++ AL+ +HL
Sbjct: 78 PFAY-SVL-------------DIVLM-GRSTH-INTFAKPKSHDYQVAMQALDYLNLTHL 121
Query: 611 KSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ LS G++QL+ +ARA+
Sbjct: 122 AKREF------------TSLSGGQRQLILIARAI 143
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 5e-11
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +++S+ Y D VL ++ I G + G G GK++LL + ++ G+I
Sbjct: 11 LEIRDLSVGY-DK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFN 525
+ I V + ++ +P++ ++
Sbjct: 68 YNGVPITKV-----KGKIFFLPEEIIVPR 91
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 29/187 (15%), Positives = 60/187 (32%), Gaps = 55/187 (29%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G G GK++LL + ++ G+I + I V + ++ +P++ ++
Sbjct: 39 NFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKIFFLPEEIIVPRKI 93
Query: 585 TIRYNLDPFGRCHD--------TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
++ L + + +++E LK K+ +LS G +
Sbjct: 94 SVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKL-------------GELSQGTIR 140
Query: 637 LLCLARALL---------------------------RKTKKKKKSGVNITRPVTS-CDKV 668
+ LA LL + K+K + +R S CD
Sbjct: 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVN 200
Query: 669 LVMDNGQ 675
+
Sbjct: 201 ENLHKYS 207
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 6e-11
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L +S + GE + +VG GAGKS+LL + + G I+ + + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 73
Query: 513 RLSVIPQDPVL 523
+ + Q
Sbjct: 74 HRAYLSQQQTP 84
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 6e-09
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNG 584
+VG GAGKS+LL + + G I+ + + L + + Q F
Sbjct: 30 HLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 88
Query: 585 TIRYNLDPFGRC--HDTEL-WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLA 641
+ + + TEL D L KL +QLS GE Q + LA
Sbjct: 89 PVW-HYLTLHQHDKTRTELLNDVAGALAL-------DDKLGRST--NQLSGGEWQRVRLA 138
Query: 642 RALL 645
+L
Sbjct: 139 AVVL 142
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 2e-10
Identities = 68/378 (17%), Positives = 121/378 (32%), Gaps = 93/378 (24%)
Query: 302 IIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHG 361
I+ VF E FV F + ++ L ID + +++ ++G F
Sbjct: 21 ILSVF--EDAFVDNFDCKDVQDMPKSILSKE-------EIDHI-IMSKDAVSGTLRLF-- 68
Query: 362 SVSPALAGLALTYASHVTGLLQFTVRVFVETEL----NFLAVERINNCSKKLVPEGRGPI 417
L+ + V+ FVE L FL I K +
Sbjct: 69 -------WTLLSKQEEM-------VQKFVEEVLRINYKFLM-SPI-----KTEQRQPSMM 108
Query: 418 TSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGK 477
T + + + +L + Q K+ NVS R L L + +N+ I G G+GK
Sbjct: 109 TRMYIEQRDRLYNDN-QVFAKY-NVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 478 SSL--LVALFRLVE---------LSSGQIKIDDFDIASVELETL--------RSRLSVIP 518
+ + V L V+ L+ + + L+ L SR
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSS 221
Query: 519 QDPVLFNGIVGR------TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 572
+ + I + ++ LLV L+ + + + + F+++ L T R +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKA-WNAFNLSCKILLTTRFK- 275
Query: 573 SVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLK---SKVVTMR-SKLDSDVQGD 628
V D + T +LD L +K K + R L +V
Sbjct: 276 QVT--DFLSAATTTHISLD--------HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT- 324
Query: 629 QLSLGEKQLLCLARALLR 646
+ L + +R
Sbjct: 325 ----TNPRRLSIIAESIR 338
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 33/200 (16%), Positives = 65/200 (32%), Gaps = 43/200 (21%)
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE--LSSGQIK 554
+D+FD V+ + +S LS D ++ + RL LS +
Sbjct: 30 VDNFDCKDVQ-DMPKSILSKEEIDHII----------MSKDAVSGTLRLFWTLLSKQEEM 78
Query: 555 IDDF--DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELW---DALEKSH 609
+ F ++ + + L S + + P + T Y D L+ K +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSM--MTRMYI-----EQRD-RLYNDNQVFAKYN 130
Query: 610 L--KSKVVTMRSKLDSDVQGDQLSL------GEKQLLCLARALLRKTKKKKKSGVNI--- 658
+ + +R L + + G K +A + K + K I
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KT--WVALDVCLSYKVQCKMDFKIFWL 187
Query: 659 TRPVTSCDKV-LVMDNGQAL 677
+ +C+ V++ Q L
Sbjct: 188 N--LKNCNSPETVLEMLQKL 205
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 41/217 (18%), Positives = 68/217 (31%), Gaps = 74/217 (34%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
++ RY N VL + G +GIVG G GK++ + L +GQ+ +
Sbjct: 95 EDCVHRYGVNA-FVL-YRLPIVKDGMVVGIVGPNGTGKTTAVKIL-------AGQLIPNL 145
Query: 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559
+ S I F
Sbjct: 146 CEDN---------------------------------------------DSWDNVIRAFR 160
Query: 560 IASVELETLRSR---LSVIPQ------DPVLFNGTIRYNLDPFGRCHDTELWDALEKSHL 610
++ R + + + + P G +R L + D + K
Sbjct: 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL---------KKVDEVGKFEE 211
Query: 611 KSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRK 647
K + + + LD ++ QLS GE Q + +A ALLRK
Sbjct: 212 VVKELELENVLDREL--HQLSGGELQRVAIAAALLRK 246
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+++ + Y L I GE IGIVG G GK++ + L + E + G+++
Sbjct: 358 VEYPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE 414
Query: 497 ID 498
D
Sbjct: 415 WD 416
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 30/128 (23%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GIVG G GK++ + L + E + G+++ D L+V +
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------------LTVAYKPQ------ 424
Query: 586 IRYNLDPFGRCHD---TELWDALEKSHLKSKV---VTMRSKLDSDVQGDQLSLGEKQLLC 639
+ G ++ L + K+++ + + D +V+ LS GE Q +
Sbjct: 425 -YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE--DLSGGELQRVA 481
Query: 640 LARALLRK 647
+A LLR
Sbjct: 482 IAATLLRD 489
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+ KNV + + N++ +N GE + I+G G+GK++LL A+ L+ SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGN 59
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLF 524
I I+ ++ +R+ + P +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAY 84
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 39/155 (25%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF- 582
I+G G+GK++LL A+ L+ SG I I+ ++ +R+ + P +
Sbjct: 32 KVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRK-----IRNYIRYSTNLPEAYE 85
Query: 583 -NGTIRYN----LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
T+ + G D + L+ L ++ + +LS G+ L
Sbjct: 86 IGVTVNDIVYLYEELKGLDRD-LFLEMLKALKLGEEI--------LRRKLYKLSAGQSVL 136
Query: 638 LCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
+ + AL ++P +++ +D
Sbjct: 137 VRTSLAL-------------ASQP-----EIVGLD 153
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ K++ R +L +SF I GE G++G GAGK++ L + L++ SSG +
Sbjct: 16 VVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+ ++ E +R +S +P++ +
Sbjct: 74 VFGKNVVE-EPHEVRKLISYLPEEAGAY 100
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 16/127 (12%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G++G GAGK++ L + L++ SSG + + ++ E +R +S +P++ +
Sbjct: 45 GLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNM 103
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKV------VTMRSKLDSDVQGDQLSLGEKQLL 638
L + S ++ V + K+ V S G + L
Sbjct: 104 QGIEYLRFVAGFYA------SSSSEIEEMVERATEIAGLGEKIKDRV--STYSKGMVRKL 155
Query: 639 CLARALL 645
+ARAL+
Sbjct: 156 LIARALM 162
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 8/118 (6%)
Query: 391 ETELNFLAVERINNCSKKLVPEG-----RGPITSEFGQVKVKLADWPRQGTIKFKNVSLR 445
++ A INN K +P I +V + +K+ + +
Sbjct: 219 RVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKK 278
Query: 446 YRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
D L + GE IGI+G G GK++ L + G + + ++
Sbjct: 279 LGDF---QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS 333
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 16/122 (13%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GI+G G GK++ L + G + + + + I + +GT
Sbjct: 298 GILGPNGIGKTTFARILVGEITADEGSVTPEKQIL--------SYKPQRIFPNY---DGT 346
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL 645
++ L + +K + + L+S+V LS GE Q L +A L
Sbjct: 347 VQ---QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN--DLSGGELQKLYIAATLA 401
Query: 646 RK 647
++
Sbjct: 402 KE 403
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 36/218 (16%), Positives = 69/218 (31%), Gaps = 70/218 (32%)
Query: 440 KNVSLRYRDNWPLVLANVSFRI-NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
V RY+ N + +G++G+ G GK+++L L +G+I +
Sbjct: 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL-------AGEIIPN 52
Query: 499 --DFDIASVELETLR----SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552
D + + E L+ + ++ S+ L + +
Sbjct: 53 FGDPNSKVGKDEVLKRFRGKEIYNYFKELY-------------SNELKIVH--------K 91
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF-GRCHDTELWDALEKSHLK 611
I+ + GT+ L R E+ + L ++L
Sbjct: 92 IQYVE-------------------YASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL- 131
Query: 612 SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
+ D + LS G Q L +A +LLR+
Sbjct: 132 ---------WNKDA--NILSGGGLQRLLVAASLLREAD 158
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+ +++ + Y + + ++ G+ + ++G GAGK++ L A+ LV G+I
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 498 DDFDIASVE 506
+ DI +
Sbjct: 66 NGQDITNKP 74
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 3e-06
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFNG- 584
++G GAGK++ L A+ LV G+I + DI + + R ++++P+ +F
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 585 TIRYNLD--PFGRCHDTELWDALEKSHLKSKVVTM--RSKLDSDVQGDQLSLGEKQLLCL 640
T+ NL + R + LE + ++ R K G LS GE+Q+L +
Sbjct: 97 TVYENLMMGAYNRKDKEGIKRDLE------WIFSLFPRLKERLKQLGGTLSGGEQQMLAI 150
Query: 641 ARAL 644
RAL
Sbjct: 151 GRAL 154
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 39/219 (17%), Positives = 63/219 (28%), Gaps = 74/219 (33%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
++ RY N VL + G +GIVG G GKS+ + L +GQ+
Sbjct: 25 EDCVHRYGVN-AFVL-YRLPVVKEGMVVGIVGPNGTGKSTAVKIL-------AGQLI--- 72
Query: 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559
P L S I F
Sbjct: 73 ---------------------PNLCGDND---------------------SWDGVIRAFR 90
Query: 560 IASVELETLRSR---LSVIPQ------DPVLFNGTIRYNLDPFGRCHDTELWDALEKSHL 610
++ + + + + + P G + L D K
Sbjct: 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK---------ADETGKLEE 141
Query: 611 KSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
K + + + L+ ++ LS GE Q + +A ALLR
Sbjct: 142 VVKALELENVLEREI--QHLSGGELQRVAIAAALLRNAT 178
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ + + Y L I GE IGIVG G GK++ + L + E + G+I+
Sbjct: 288 VTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE 344
Query: 497 ID 498
D
Sbjct: 345 WD 346
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 30/128 (23%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GIVG G GK++ + L + E + G+I+ D L+V +
Sbjct: 316 GIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD---------------LTVAYKPQ------ 354
Query: 586 IRYNLDPFGRCHD--TEL-WDALEKSHLKSKV---VTMRSKLDSDVQGDQLSLGEKQLLC 639
D G ++ +++ L + K+++ + + D +V +LS GE Q +
Sbjct: 355 -YIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN--ELSGGELQRVA 411
Query: 640 LARALLRK 647
+A LLR
Sbjct: 412 IAATLLRD 419
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 54/185 (29%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFN 583
++G G GK++L+ L ++ GQ I +++ +++ V LF
Sbjct: 382 VMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVSMK-----PQKIAPKFPGTVRQLFF 435
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
IR G+ + + + K + + +D +VQ LS GE Q + + A
Sbjct: 436 KKIR------GQFLNPQFQTDVVKP------LRIDDIIDQEVQ--HLSGGELQRVAIVLA 481
Query: 644 LLRK----------------------------TKKKKKSGVNIT---RPVTS-CDKVLVM 671
L KK+ + T DKV+V
Sbjct: 482 LGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF 541
Query: 672 DNGQA 676
+ +
Sbjct: 542 EGIPS 546
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+ F SL+ VL + E + ++G G GK++L+ L ++
Sbjct: 347 NDSASRAFSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPV 522
GQ I +++ +++ V
Sbjct: 406 EGQD-IPKLNVSMK-----PQKIAPKFPGTV 430
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 49/210 (23%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
+V+ RY N + G+ +G+VG G GKS+ L L +G+ K +
Sbjct: 81 AHVTHRYSAN--SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKIL-------AGKQKPNL 131
Query: 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559
+ ++ FR EL + K+ + D
Sbjct: 132 GRF----------------------------DDPPEWQEIIKYFRGSELQNYFTKMLEDD 163
Query: 560 IASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRS 619
I ++ + + P G ++ + + D + + + +
Sbjct: 164 IKAI------IKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKI----LQLEN 213
Query: 620 KLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
L D+ ++LS GE Q + + +++
Sbjct: 214 VLKRDI--EKLSGGELQRFAIGMSCVQEAD 241
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 9e-08
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I + + VL ++ I GE + ++G +G+GKS+ L L L + G+I
Sbjct: 25 IDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 497 IDDFDIAS--VELETLRSRL 514
ID ++ + L +R +
Sbjct: 83 IDGINLKAKDTNLNKVREEV 102
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 30/175 (17%), Positives = 70/175 (40%), Gaps = 7/175 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K N+ +Y + +++F+ + I ++G GAGKS+L+ L + +SG++
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 497 I-DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI-K 554
++ IA ++ S + + P + +TG + ++ A ++ E + + K
Sbjct: 732 THENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 555 IDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSH 609
I + + + SR + + N+ +E W +
Sbjct: 792 IFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENI-----GMKSERWVPMMSVD 841
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ SL Y +L R+ GI G G GKS+L+ A+ G
Sbjct: 436 LCNCEFSLAYGAKI--LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPT 491
Query: 497 IDDFDIASV--ELETLRSRLSVI 517
++ V +++ S SV+
Sbjct: 492 QEECRTVYVEHDIDGTHSDTSVL 514
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N+ R +L +S + GE + I+G +G+GKS+LL L L + G++
Sbjct: 5 LRAENIKKVIRGYE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 497 IDDFDIASV---ELETLRSR 513
++ ++ EL LR+R
Sbjct: 63 LEGKEVDYTNEKELSLLRNR 82
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I KNVS ++ + L NV+ I +GE GI+G +GAGK++ + + L S+G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 496 KIDDFDIASVELETL 510
DD +AS +
Sbjct: 63 YFDDRLVASNGKLIV 77
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 437 IKFKNVSLRYR--DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
+K KNV+ Y+ + L NV+ I GE + I+G +G+GKS++L + L + + G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 495 IKIDDFDIASV---ELETLRSR 513
+ ID+ + EL +R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRD 83
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ ++ RY + VL VS + G+ I I+G +G+GKS+ L + L + S G I
Sbjct: 7 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 497 IDDFDI 502
++ +I
Sbjct: 65 VNGQNI 70
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV----ELSS 492
I+ +++S ++++ L N+S ++ GE I+G TGAGK+ L L+ S
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFL----ELIAGFHVPDS 54
Query: 493 GQIKIDDFDIASV 505
G+I +D D+ +
Sbjct: 55 GRILLDGKDVTDL 67
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 6e-05
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
TI+F V Y + VSF+I GE +G++G +G+GK+++L + L + G +
Sbjct: 14 TIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 496 KIDDFDIASV 505
I + +
Sbjct: 73 WIGGKRVTDL 82
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
IK +N+ ++ + L N++ +I GE + ++G +G+GKS+LL + + + +SG+I
Sbjct: 3 EIKLENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 496 KIDDFDIASVE 506
D+ D+ +
Sbjct: 61 YFDEKDVTELP 71
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ ++S +++ VL ++S ++ GE + I+G +G GK++LL L + SG+I
Sbjct: 5 LHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 497 IDDFDIAS 504
+ I S
Sbjct: 63 LSGKTIFS 70
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+K +N++ R+ + + ++ I GE + ++G +G GK++ L + L E + G+I
Sbjct: 11 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 496 KIDDFDIASVE 506
D D+ +
Sbjct: 69 YFGDRDVTYLP 79
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV----ELS 491
+I+ N+ + + VSF + GE + ++G +G GK++ L ++ + +
Sbjct: 3 SIRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTL----LMLAGIYKPT 56
Query: 492 SGQIKIDDFDIASVE 506
SG+I DD + +
Sbjct: 57 SGEIYFDDVLVNDIP 71
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
++ +V + + + +S + GE + ++G +G GK++ L + L E S GQI
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 496 KIDD 499
I D
Sbjct: 61 YIGD 64
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV----ELS 491
+++ +NV+ + + +V +++ I+ GE + VG +G GKS+LL R++ ++
Sbjct: 3 SVQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLL----RMIAGLETIT 56
Query: 492 SGQIKIDD 499
SG + I +
Sbjct: 57 SGDLFIGE 64
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.98 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.97 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.94 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.91 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.9 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.88 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.87 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.86 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.85 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.84 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.83 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.83 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.8 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.78 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.76 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.76 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.74 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.72 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.72 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.72 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.71 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.7 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.7 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.69 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.69 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.67 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.67 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.65 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.65 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.63 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.62 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.6 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.56 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.55 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.54 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.53 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.53 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.5 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.49 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.48 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.48 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.43 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.42 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.4 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.38 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.38 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.36 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.35 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.32 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.28 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.27 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.26 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.26 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.25 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.23 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.23 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.23 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.23 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.23 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.22 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.21 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.2 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.19 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.18 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.17 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.17 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.17 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.14 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.13 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.11 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.11 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.1 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.09 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.09 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.07 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.06 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 99.05 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.05 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.01 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.96 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.96 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.95 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 98.95 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.92 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.89 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.87 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.87 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.87 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.86 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.84 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.84 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.82 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.82 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.82 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.81 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.78 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.78 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.74 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.72 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.68 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 98.68 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.66 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.59 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 98.55 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.53 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.5 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.46 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 98.45 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.44 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.43 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.39 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.36 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.36 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.35 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.34 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.32 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.3 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.26 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.24 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.23 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.23 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.23 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 98.15 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 98.14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 98.12 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.11 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 98.1 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 98.09 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 98.08 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 98.08 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 98.08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 98.07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 98.06 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 98.06 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 98.06 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.05 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 98.04 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 98.03 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 98.01 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.01 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 98.01 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.99 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.98 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.96 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.96 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.95 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.95 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.95 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.95 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.92 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.91 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.91 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.91 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.91 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.91 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.9 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.9 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.89 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.88 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.88 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.86 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.86 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.84 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.83 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.83 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.82 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.82 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.81 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.8 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.79 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.78 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 97.78 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.78 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.76 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.75 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.75 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.72 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.7 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.69 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.69 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.69 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.62 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.6 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.59 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.58 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.57 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.57 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.56 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.55 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.55 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.55 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.54 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.53 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.53 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.53 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.52 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.5 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.46 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.44 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 97.44 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.41 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.38 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.35 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.31 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.29 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.26 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.25 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.24 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 97.23 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.19 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.18 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.18 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.18 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.18 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.18 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.18 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 97.17 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.17 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.16 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.15 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 97.14 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.12 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.07 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.05 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.01 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.01 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.0 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.98 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.97 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.97 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.97 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.95 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.93 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.91 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.89 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.87 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.86 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.84 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.83 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.79 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.79 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.75 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 96.75 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.74 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.73 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.7 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 96.69 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.69 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.69 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.69 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.66 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.65 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.63 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.62 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 96.62 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.61 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.6 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.58 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.56 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 96.56 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.55 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.51 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.51 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.51 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.48 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.47 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.47 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.45 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.43 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.37 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.34 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.34 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 96.34 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 96.33 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.32 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.3 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.29 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.29 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.29 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.26 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.25 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.23 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.18 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.17 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.16 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.16 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.16 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 96.12 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.12 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.12 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.11 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.11 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.1 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.08 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.07 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.06 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.97 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.96 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 95.96 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.93 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.93 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.92 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.92 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.92 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.92 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.91 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.9 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 95.88 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.88 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.87 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.85 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.82 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 95.82 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.81 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 95.8 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.8 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.8 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.8 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.78 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.77 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 95.76 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.75 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 95.75 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.75 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.74 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.74 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.74 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.73 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.73 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 95.73 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.73 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.72 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.71 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.7 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.7 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.67 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.67 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 95.67 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.67 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.67 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.64 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.63 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.63 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.63 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.63 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 95.62 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.62 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.61 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.6 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 95.6 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 95.59 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.57 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 95.56 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.56 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.55 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.54 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.54 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.53 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.52 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 95.52 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.52 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.51 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.51 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 95.5 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 95.5 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.49 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.49 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.48 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.46 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.46 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.46 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.44 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.43 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.43 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.42 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.42 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 95.41 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.4 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.4 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.39 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.39 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.37 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.36 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.36 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.35 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.35 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.33 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.33 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.32 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.28 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 95.26 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.26 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.21 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 95.2 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.19 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.18 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.17 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.17 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 95.16 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 95.15 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.14 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.14 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 95.13 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 95.13 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.13 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.12 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.11 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.1 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.1 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 95.1 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.1 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.09 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.09 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.08 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.08 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.06 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.06 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.06 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.05 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.04 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.03 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.01 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.01 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.98 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.98 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 94.97 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.96 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.92 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.91 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 94.9 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.9 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.89 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.87 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 94.86 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.86 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.86 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.85 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 94.83 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.82 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.79 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.79 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.79 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.79 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.78 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.78 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 94.77 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.77 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.77 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-77 Score=728.81 Aligned_cols=337 Identities=17% Similarity=0.215 Sum_probs=275.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
.+.-+++..++..++|+|++.. +++|||. ++ +|+|+|.+.+++.+ +..++.+++++++++++++++++++|++
T Consensus 161 ~~~~~r~~~~lR~~~~~~ll~~-~~~~fd~~~~G~l~sr~~~D~~~i~~~~-~~~l~~~~~~~~~~i~~~i~~~~~~~~l 238 (1321)
T 4f4c_A 161 LYVAEQMNNRLRREFVKSILRQ-EISWFDTNHSGTLATKLFDNLERVKEGT-GDKIGMAFQYLSQFITGFIVAFTHSWQL 238 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-CHHHHHHTCCTTHHHHHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CHHHHCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566667999999986 6799953 34 55566666666644 4567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
+++++.++|++.++...+.+..++..+..+...++..+.++|.++|+++||+|+.|+.+.++|.+..++..+...+....
T Consensus 239 ~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1321)
T 4f4c_A 239 TLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLF 318 (1321)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888778888888999999999999999999999999999999888877665554443
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy845 334 MRWLAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVP 411 (677)
Q Consensus 334 ~~~~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~ 411 (677)
.........++.. .+.++++|.+++.+|.+++|.+.+++.+...+..|+..+...+..++.+.+|++|+.++++. ++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~-~~ 397 (1321)
T 4f4c_A 319 LGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDR-KP 397 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Cc
Confidence 3333333333322 23455667778899999999999999999999999999999999999999999999999943 33
Q ss_pred CCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 412 EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 412 e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+.+.+.+ ......+.+|+|+|+||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|
T Consensus 398 ~~~~~~~-------~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 398 VIDSSSK-------AGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp CSSCSSS-------CCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred ccccccc-------ccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 3221111 011122356899999999999864 45799999999999999999999999999999999999999
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
++|+|.+||+|+++++.+++|++||||||||.||+
T Consensus 471 ~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~ 505 (1321)
T 4f4c_A 471 LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN 505 (1321)
T ss_dssp SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS
T ss_pred ccCcccCCCccchhccHHHHhhcccccCCcceeeC
Confidence 99999999999999999999999999999999999
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-69 Score=656.48 Aligned_cols=337 Identities=16% Similarity=0.173 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccc-c-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFAL-P-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~-~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
.+...++.+++..++|+|++.. ++.|||. | + .|+|+|.+.+++.+. ..+..++++++++++.++++++.+|++
T Consensus 133 ~~~~~~~~~~lr~~l~~~l~~~-~~~~f~~~~~G~l~sr~~~D~~~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l 210 (1284)
T 3g5u_A 133 CLAAGRQIHKIRQKFFHAIMNQ-EIGWFDVHDVGELNTRLTDDVSKINEGIG-DKIGMFFQAMATFFGGFIIGFTRGWKL 210 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTHHHHSCCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CHHHHccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666999999996 6699963 4 3 666777777777654 457788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
+++++++.|++.++..++.+..++..+..++..++.+++++|+++|+++||+|++|+++.++|++..++..+...+....
T Consensus 211 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1284)
T 3g5u_A 211 TLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAIT 290 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999899998888888888888888888888899999999999999999999999999999999988877655443333
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy845 334 MRWLAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVP 411 (677)
Q Consensus 334 ~~~~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~ 411 (677)
.........++.. .+.++++|..++..|.+++|.+.+++.+......++..+...+..++.+..+++|+.++++. ++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~-~~ 369 (1284)
T 3g5u_A 291 ANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDN-KP 369 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CC
Confidence 3222222222222 23456667778899999999888777777777889999999999999999999999999943 33
Q ss_pred CCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 412 EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 412 e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+.+...+. .....+.+|+|+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|
T Consensus 370 ~~~~~~~~-------~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 370 SIDSFSKS-------GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp CCSSCCSS-------CCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred cCCccccc-------CCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 32211110 00111246789999999999864 34799999999999999999999999999999999999999
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
++|+|.+||+|+++++.+++|+++|+|||||.||+
T Consensus 443 ~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 477 (1284)
T 3g5u_A 443 LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA 477 (1284)
T ss_dssp SEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS
T ss_pred CCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCC
Confidence 99999999999999999999999999999999987
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-66 Score=587.06 Aligned_cols=435 Identities=21% Similarity=0.270 Sum_probs=355.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy845 174 SKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICF 248 (677)
Q Consensus 174 ~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~ 248 (677)
...+..+..+++..++..++|+|++.. +..||+ .+ + .++|+|.+.+++.+. ..+..++...+.+++++++++.
T Consensus 83 ~~~~~~~~~~~~~~~lr~~l~~~ll~~-~~~~~~~~~~G~l~~r~~~D~~~i~~~~~-~~~~~~~~~~~~~i~~~~~l~~ 160 (587)
T 3qf4_A 83 CTVFASYASQNFGADLRRDLFRKVLSF-SISNVNRFHTSSLITRLTNDVTQLQNLVM-MLLRIVVRAPLLFVGGIVMAVS 160 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555666667777999999987 458884 33 3 666666766766554 3556678888888888888899
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q psy845 249 VFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLF 328 (677)
Q Consensus 249 ~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~ 328 (677)
++|++++++++.+++..++..++.++.++..+..++..+++++.++|.++|+++||+|++|+.+.++|++..++..+...
T Consensus 161 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 240 (587)
T 3qf4_A 161 INVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSII 240 (587)
T ss_dssp HCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888777777777777777777778899999999999999999999999999999998888776655
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy845 329 LCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406 (677)
Q Consensus 329 ~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil 406 (677)
+......+.......+..+ +.++++|.+++.+|.+++|.+.+++.+...+..|+..+...+..++++..|.+|+.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l 320 (587)
T 3qf4_A 241 SAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVL 320 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333333332221 33455666788899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 407 KKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 407 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
+. +++.+.+.. ....++..+.|+++||+|+|+++.+++|+|+||++++||++|||||||||||||+++|+|
T Consensus 321 ~~-~~~~~~~~~--------~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 321 NE-KPAIEEADN--------ALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp HC-CCSCCCCTT--------CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred cC-CCccCCCCC--------ccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 53 333221111 011113457899999999998665679999999999999999999999999999999999
Q ss_pred CCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHH
Q psy845 487 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 566 (677)
Q Consensus 487 ~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 566 (677)
+|+|++|+|.+||+|++++ +.+
T Consensus 392 ~~~~~~G~i~i~g~~i~~~----------------------------------------------------------~~~ 413 (587)
T 3qf4_A 392 LIDPERGRVEVDELDVRTV----------------------------------------------------------KLK 413 (587)
T ss_dssp SSCCSEEEEEESSSBGGGB----------------------------------------------------------CHH
T ss_pred CccCCCcEEEECCEEcccC----------------------------------------------------------CHH
Confidence 9999999999999999988 888
Q ss_pred HHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHH
Q psy845 567 TLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARA 643 (677)
Q Consensus 567 ~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARA 643 (677)
++|++++||||||.+|++|++|||.++. +.++++++++++.++++++++++|+|+||.+ +|.+||||||||++||||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARa 493 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA 493 (587)
T ss_dssp HHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHH
T ss_pred HHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999765 5788999999999999999999999999999 799999999999999999
Q ss_pred Hhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 644 LLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 644 LLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+++||+++ ..+++|+ +++++.||||+||++|+++
T Consensus 494 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~ 556 (587)
T 3qf4_A 494 LVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVA 556 (587)
T ss_dssp HHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEE
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEE
Confidence 99999977 1356772 5577889999999999984
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-65 Score=579.33 Aligned_cols=437 Identities=19% Similarity=0.249 Sum_probs=359.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy845 170 YHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL 244 (677)
Q Consensus 170 ~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v 244 (677)
.+.+.........+++.+++...+|+|+... +..||+. ++ .++|+|.+.+++.+. ..+..++.+++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~-~~~~~~~~~~g~l~~rl~~d~~~i~~~~~-~~~~~~~~~~~~~i~~~~ 158 (582)
T 3b5x_A 81 SGFASSYCLSWVSGNVVMQMRRRLFNHFMHM-PVRFFDQESTGGLLSRITYDSEQVAGATS-RALVSIVREGASIIGLLT 158 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333333334444555555666999999986 5599964 33 566667777766553 456778889999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy845 245 MICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENS 324 (677)
Q Consensus 245 ~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~ 324 (677)
++++++|++++++++..++..++...+.+..++..+..++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..
T Consensus 159 ~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 238 (582)
T 3b5x_A 159 LMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMR 238 (582)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888877777788889999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 325 TTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERI 402 (677)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI 402 (677)
+...+......+.....+.+..+ +.++++|.+.+.+|.+++|.+.+++.+...+..|+..+...+..++.+..+++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri 318 (582)
T 3b5x_A 239 QQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTL 318 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666555555555544444432 2344556678889999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHH
Q psy845 403 NNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482 (677)
Q Consensus 403 ~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~ 482 (677)
.++++. +++.+.+ . . ..++..+.|+++||+|+|+++++++|+|+||++++||++|||||||||||||++
T Consensus 319 ~~~l~~-~~~~~~~-~--------~-~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 319 FGLMDL-ETERDNG-K--------Y-EAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHcC-CCcCCCC-C--------C-CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 999843 3321111 0 0 111234679999999999754356999999999999999999999999999999
Q ss_pred HHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 483 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 483 LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
+|+|+|+|++|+|.+||+|+++.
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~--------------------------------------------------------- 410 (582)
T 3b5x_A 388 LFTRFYDVDSGSICLDGHDVRDY--------------------------------------------------------- 410 (582)
T ss_pred HHhcCCCCCCCEEEECCEEhhhC---------------------------------------------------------
Confidence 99999999999999999999887
Q ss_pred hhHHHHhhhcccccccccccccchhhccccCC--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHH
Q psy845 563 VELETLRSRLSVIPQDPVLFNGTIRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638 (677)
Q Consensus 563 ~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI 638 (677)
+.+++|++++||||||.+|++|++||+.++. +.++++++++++.++++++++++|+|+||.+ +|.+||||||||+
T Consensus 411 -~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 411 -KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred -CHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 7788999999999999999999999998764 5678999999999999999999999999999 7999999999999
Q ss_pred HHHHHHhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+||||+++||+++ ..+++|+ +++++.||||+||++|+++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEII 557 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 9999999999976 1246772 4567789999999999984
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-66 Score=582.74 Aligned_cols=444 Identities=21% Similarity=0.300 Sum_probs=360.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHH
Q psy845 165 IITTLYHLISKVFRSVYLRSVFQ----NMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQN 235 (677)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~q----~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~ 235 (677)
++..+.+.++...+.+....+++ ++..++|+|++... ..||+. ++ .++++|.+.+++.+.. .+..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~-~~~~~~~~~G~l~~r~~~D~~~i~~~~~~-~~~~~~~~ 145 (578)
T 4a82_A 68 FIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS-ARFYANNQVGQVISRVINDVEQTKDFILT-GLMNIWLD 145 (578)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHTSCHHHHHHHHHHHHHHTHHHHHC-CCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33344455555555555555555 45558999999874 599953 34 5556666666665543 34557778
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHH
Q psy845 236 MWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRR 315 (677)
Q Consensus 236 ~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~ 315 (677)
++.+++++++++.++|++++++++..+++..+...+.++.++..+...+..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 146 ~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 225 (578)
T 4a82_A 146 CITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKN 225 (578)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHH
Confidence 88888888889999999999888888888888888888888888778888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 316 FCEQYDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETE 393 (677)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~ 393 (677)
|++..++..+...+..............+..+ +.++++|.+++.+|.+++|.+.+++.+...+..|+..+...+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~ 305 (578)
T 4a82_A 226 FDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLT 305 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887766555444433333333333322 3345566778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCC
Q psy845 394 LNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRT 473 (677)
Q Consensus 394 ~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpS 473 (677)
++..|++|+.++++. +++.+.+.. .....+..++|+++||+|+|+++++++|+|+||++++||++||||||
T Consensus 306 ~~~~s~~ri~~~l~~-~~~~~~~~~--------~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~s 376 (578)
T 4a82_A 306 QSFASMDRVFQLIDE-DYDIKNGVG--------AQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMS 376 (578)
T ss_dssp HHHHHHHHHHHHHTC-CCSSCCCTT--------CCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECST
T ss_pred HHHHHHHHHHHHHcC-CCcccCCCC--------ccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCC
Confidence 999999999999943 333221111 01112245789999999999875567999999999999999999999
Q ss_pred CCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccc
Q psy845 474 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553 (677)
Q Consensus 474 GSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i 553 (677)
|||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 377 GsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~------------------------------------------------ 408 (578)
T 4a82_A 377 GGGKSTLINLIPRFYDVTSGQILIDGHNIKDF------------------------------------------------ 408 (578)
T ss_dssp TSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS------------------------------------------------
T ss_pred CChHHHHHHHHhcCCCCCCcEEEECCEEhhhC------------------------------------------------
Confidence 99999999999999999999999999999988
Q ss_pred cccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCC
Q psy845 554 KIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQL 630 (677)
Q Consensus 554 ~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~L 630 (677)
+.+++|+++|||||||.+|++|++||+.++. +.++++++++++.++++++++++|+|+||.+ +|.+|
T Consensus 409 ----------~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 409 ----------LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp ----------CHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred ----------CHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 7889999999999999999999999998764 5788999999999999999999999999999 79999
Q ss_pred ChHHHHHHHHHHHHhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 631 SLGEKQLLCLARALLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 631 SGGQRQRIaIARALLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
|||||||++||||+++||+++ ..+++|+ +++++.||||+||++|+++
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 554 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIV 554 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 999999999999999999976 1346672 5678889999999999984
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-65 Score=576.55 Aligned_cols=430 Identities=18% Similarity=0.241 Sum_probs=356.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy845 177 FRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFP 251 (677)
Q Consensus 177 ~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~ 251 (677)
......+++.+++..++|+|++.. +..||+. ++ .++|+|.+.+++.+. ..+..++.+++.+++.++++++++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~-~~~~~~~~~~g~l~~r~~~d~~~i~~~~~-~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGM-PVAFFDKQSTGTLLSRITYDSEQVASSSS-GALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-CSTHHHHSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CHHHHCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444555556666999999986 5699953 33 566667776766543 4567788899999999989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 252 WFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCS 331 (677)
Q Consensus 252 ~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 331 (677)
++++++++..++..++...+.++.++..+..++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888877778888899999999999999999999999999999999988887766666
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy845 332 MAMRWLAVRIDVLAVIA--MAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409 (677)
Q Consensus 332 ~~~~~~~~~l~~l~~l~--~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~ 409 (677)
....+.....+++..+. .++++|.+.+.+|.+++|.+.+++.++..+..|+..+...+.+++.+..+++|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~- 324 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS- 324 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 55555555555444432 234445556778999999999999999999999999999999999999999999999943
Q ss_pred CCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 410 ~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+++.+.+ . . ..++..+.|+++||+|+|+++++++|+|+||++++||++|||||||||||||+++|+|+++
T Consensus 325 ~~~~~~~-~--------~-~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 325 EQEKDEG-K--------R-VIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CCSCCCC-C--------B-CCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCccCC-C--------C-CCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 3332111 0 0 1112346799999999997543469999999999999999999999999999999999999
Q ss_pred CCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh
Q psy845 490 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 569 (677)
Q Consensus 490 p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR 569 (677)
|++|+|.+||+|++++ +.+++|
T Consensus 395 p~~G~i~~~g~~~~~~----------------------------------------------------------~~~~~~ 416 (582)
T 3b60_A 395 IDEGHILMDGHDLREY----------------------------------------------------------TLASLR 416 (582)
T ss_dssp CSEEEEEETTEETTTB----------------------------------------------------------CHHHHH
T ss_pred CCCCeEEECCEEcccc----------------------------------------------------------CHHHHH
Confidence 9999999999999887 778899
Q ss_pred hhcccccccccccccchhhccccCC--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHh
Q psy845 570 SRLSVIPQDPVLFNGTIRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645 (677)
Q Consensus 570 ~~I~~V~Qd~~LFsgTIrENI~~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALL 645 (677)
++++||||||.+|++|++||+.++. +.++++++++++.++++++++++|+|+||.+ +|.+||||||||++||||++
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 5778999999999999999999999999999 79999999999999999999
Q ss_pred ccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 646 RKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 646 r~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+||+++ ..+++|+ +++++.||||+||++|+++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 557 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEE
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 999976 1246772 5667889999999999984
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-66 Score=589.03 Aligned_cols=429 Identities=22% Similarity=0.315 Sum_probs=356.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy845 178 RSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPW 252 (677)
Q Consensus 178 ~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~ 252 (677)
.....+++..++..++|+|++.. +..||+ .+ + .++++|.+.+++.+. ..+..++.+++.+++++++++.++|+
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~-~~~~~~~~~~G~l~~r~~~D~~~i~~~~~-~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRV-PVGFFDRTPHGDIISRVINDVDNINNVLG-NSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-CTHHHHHSCHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556667999999997 459995 33 3 566667777776554 45567888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 253 FALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSM 332 (677)
Q Consensus 253 lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 332 (677)
++++++++.++..++...+.+..++..+..++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+...
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888777788888999999999999999999999999999999998887766555444
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy845 333 AMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLV 410 (677)
Q Consensus 333 ~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~ 410 (677)
...+.....+.+..+ +.++++|.+++.+|.+++|.+.+++.+...+..|+..+...+..++.+..|++|+.++++ .+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~-~~ 337 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD-LE 337 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 433333333333332 334556667888999999999999999999999999999999999999999999999994 33
Q ss_pred CCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 411 PEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 411 ~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
++.+.+. ....++..++|+++||+|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+|+|
T Consensus 338 ~~~~~~~---------~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 338 EEKDDPD---------AVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp CCCCCSS---------CCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred CCCCCCC---------CCCCCCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 3322111 01112345789999999999764 4699999999999999999999999999999999999999
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 570 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~ 570 (677)
++|+|.+||+|++++ +.+++|+
T Consensus 408 ~~G~i~~~g~~i~~~----------------------------------------------------------~~~~~r~ 429 (598)
T 3qf4_B 408 DRGQILVDGIDIRKI----------------------------------------------------------KRSSLRS 429 (598)
T ss_dssp SEEEEEETTEEGGGS----------------------------------------------------------CHHHHHH
T ss_pred CCeEEEECCEEhhhC----------------------------------------------------------CHHHHHh
Confidence 999999999999988 7889999
Q ss_pred hcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhcc
Q psy845 571 RLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 571 ~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~ 647 (677)
+++||||||.+|++|++||+.++. +.++++++++++.++++++++++|+|+||.+ +|.+||||||||+|||||++++
T Consensus 430 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp HEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred ceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 5788999999999999999999999999999 8999999999999999999999
Q ss_pred chhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 648 TKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 648 p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
|+++ ..+++|+ +++++.||||+||++|+++
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEE
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 9976 1256772 5677889999999999984
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=417.38 Aligned_cols=221 Identities=31% Similarity=0.458 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEE
Q psy845 389 FVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIG 468 (677)
Q Consensus 389 ~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VA 468 (677)
+.+++.+.++++|+.++++.. ++...... .. ...+..+.|+++||+|+|+++ +++|+|+||+|++||++|
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~-~~~~~~~~-------~~-~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~va 84 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEE-TEVKDLPG-------AG-PLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLA 84 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHH-HSCCCCTT-------CB-CCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEE
T ss_pred chhHHHHHHHHHHHHHHHhCC-cccccccc-------cc-ccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEE
Confidence 346778889999999998543 22111110 00 111235789999999999754 469999999999999999
Q ss_pred EEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhh
Q psy845 469 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL 548 (677)
Q Consensus 469 IVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~ 548 (677)
||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 85 ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~------------------------------------------- 121 (306)
T 3nh6_A 85 LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV------------------------------------------- 121 (306)
T ss_dssp EESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSB-------------------------------------------
T ss_pred EECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccC-------------------------------------------
Confidence 9999999999999999999999999999999999988
Q ss_pred ccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--
Q psy845 549 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV-- 625 (677)
Q Consensus 549 ~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v-- 625 (677)
+.+++|++||||||+|.+|++||+|||.++. ..++++++++++.+++++++..+|+|++|.+
T Consensus 122 ---------------~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 122 ---------------TQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ---------------CHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred ---------------CHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 7889999999999999999999999998765 5678999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCee
Q psy845 626 QGDQLSLGEKQLLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 626 ~G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrI 676 (677)
+|.+||||||||+||||||+++|+++ ..+++| | +++++.||||+||++|+|
T Consensus 187 ~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~i 266 (306)
T 3nh6_A 187 RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCI 266 (306)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEE
T ss_pred CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEE
Confidence 79999999999999999999999977 124567 2 567788999999999998
Q ss_pred C
Q psy845 677 L 677 (677)
Q Consensus 677 V 677 (677)
+
T Consensus 267 v 267 (306)
T 3nh6_A 267 V 267 (306)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=442.14 Aligned_cols=434 Identities=20% Similarity=0.263 Sum_probs=338.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccc---c-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy845 178 RSVYLRSVFQNMWSMLFAFLMICFVFPWFAL---P-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVF 250 (677)
Q Consensus 178 ~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~---~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~ 250 (677)
..+...++.+++...+|+|++.. +++|||+ | + .|+++|.+.+++.+ +..+..++.+++++++.++++++.+
T Consensus 818 ~~~~~~~~~~~lr~~l~~~il~~-~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l-~~~l~~~~~~~~~~i~~~~~~~~~~ 895 (1321)
T 4f4c_A 818 MGIASESLTRDLRNKLFRNVLSQ-HIGFFDSPQNASGKISTRLATDVPNLRTAI-DFRFSTVITTLVSMVAGIGLAFFYG 895 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-CSSSTTSGGGCHHHHHHHHHTHHHHHHTTT-SHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CchhhccCCCChHHHHhcchhhHHHHHHHH-HHHHHHHHHHhhhHHHHeeeehHHh
Confidence 34445555666777999999985 6799974 4 3 55566666666644 4567789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q psy845 251 PWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLC 330 (677)
Q Consensus 251 ~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~ 330 (677)
|+++++++++++++.+....+.+..++......+..++..+.+.|+++|+++||+|++|+++.++|.+..+...+...+.
T Consensus 896 ~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 975 (1321)
T 4f4c_A 896 WQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKE 975 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877777666655443333333344466778899999999999999999999999999998877665544
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy845 331 SMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSV--SPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406 (677)
Q Consensus 331 ~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~l--s~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil 406 (677)
.....+.......+..+ +.++++|..++..|.. +.+.+..++.+......++..+.+...+++.+..|++|+.+++
T Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l 1055 (1321)
T 4f4c_A 976 AFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGML 1055 (1321)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43332222222222211 2334455555666654 4444444344444445677788888899999999999999999
Q ss_pred hhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 407 KKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 407 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+. +++.+... ..+..++..|+|+|+||+|+||++ +.+||+|+||+|+|||+||||||||||||||+++|+
T Consensus 1056 ~~-~~~~~~~~--------~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1056 RK-ISKIDSLS--------LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp HC-CCSSCTTC--------CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred hC-cccCCCcc--------CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 43 33322111 122345677899999999999865 347999999999999999999999999999999999
Q ss_pred cCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH
Q psy845 486 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 486 r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 565 (677)
|+|+|++|+|.+||+|+++++.+++|+++++|||||+||+|||++|
T Consensus 1127 rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN---------------------------------- 1172 (1321)
T 4f4c_A 1127 RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN---------------------------------- 1172 (1321)
T ss_dssp TSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH----------------------------------
T ss_pred cCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999999888
Q ss_pred HHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHH
Q psy845 566 ETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARA 643 (677)
Q Consensus 566 ~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARA 643 (677)
|+-++++ .+++|+|+++||+++++++||++||+||||.+ +|.+||||||||||||||
T Consensus 1173 --------------------I~~gld~-~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1173 --------------------IIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp --------------------HSSSSCT-TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred --------------------HhccCCC-CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 2222332 36799999999999999999999999999999 899999999999999999
Q ss_pred Hhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 644 LLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 644 LLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
++|||+|+ ..+++| | ++|+++||||+|||+|||+
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~Iv 1294 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTII 1294 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEE
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEE
Confidence 99999987 246788 3 7899999999999999985
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=346.43 Aligned_cols=186 Identities=32% Similarity=0.498 Sum_probs=164.0
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
..+|+++||+++|+++..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~-------- 76 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA-------- 76 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS--------
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC--------
Confidence 357999999999953224699999999999999999999999999999999999999999999999998776
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
+...+|++++||||++.+|++|++||+.++
T Consensus 77 --------------------------------------------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~ 106 (247)
T 2ff7_A 77 --------------------------------------------------DPNWLRRQVGVVLQDNVLLNRSIIDNISLA 106 (247)
T ss_dssp --------------------------------------------------CHHHHHHHEEEECSSCCCTTSBHHHHHTTT
T ss_pred --------------------------------------------------CHHHHHhcEEEEeCCCccccccHHHHHhcc
Confidence 566788999999999999999999999875
Q ss_pred C-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 594 G-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 594 ~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
. ..+++++.++++.+++.+++.++|+|+++.+ ++.+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~ 186 (247)
T 2ff7_A 107 NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186 (247)
T ss_dssp CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 3 3567788999999999999999999999988 78999999999999999999999976
Q ss_pred ----cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ++.++.||||++|++|+++
T Consensus 187 ~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 222 (247)
T ss_dssp HHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEE
T ss_pred HHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 1246673 3345669999999999974
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-41 Score=341.64 Aligned_cols=182 Identities=31% Similarity=0.524 Sum_probs=159.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 69 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI----------- 69 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTT-----------
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC-----------
Confidence 6899999999533 4699999999999999999999999999999999999999999999999998776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC-C-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF-G- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~-~- 594 (677)
+...+|++++||||++.+|++|++||+.++ .
T Consensus 70 -----------------------------------------------~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~ 102 (243)
T 1mv5_A 70 -----------------------------------------------SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG 102 (243)
T ss_dssp -----------------------------------------------SCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS
T ss_pred -----------------------------------------------CHHHHHhhEEEEcCCCccccccHHHHHhhhccC
Confidence 334568899999999999999999999875 2
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..+++++.++++.+++.+++.++|+|+++.+ ++.+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l 182 (243)
T 1mv5_A 103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182 (243)
T ss_dssp CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 4567789999999999999999999999988 68999999999999999999999976
Q ss_pred --cccccce---e---cccccccEEEEEeCCeeC
Q psy845 652 --KKSGVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --~~~~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+++|| . +.++.||||++|++|+++
T Consensus 183 ~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216 (243)
T ss_dssp HHHHTTSEEEEECCSHHHHHHCSEEEEEETTEEC
T ss_pred HHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 1246673 2 234569999999999985
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=360.42 Aligned_cols=189 Identities=37% Similarity=0.672 Sum_probs=168.8
Q ss_pred CCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHH
Q psy845 430 DWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 430 ~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~ 509 (677)
.|+..+.|+++||+++|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.++
T Consensus 13 ~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~---- 87 (390)
T 3gd7_A 13 IWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSI---- 87 (390)
T ss_dssp CSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSS----
T ss_pred CCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcC----
Confidence 455667899999999997544579999999999999999999999999999999999998 999999999999887
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
+.+.+|++++||+|++.+|++|++||
T Consensus 88 ------------------------------------------------------~~~~~rr~ig~v~Q~~~lf~~tv~en 113 (390)
T 3gd7_A 88 ------------------------------------------------------TLEQWRKAFGVIPQKVFIFSGTFRKN 113 (390)
T ss_dssp ------------------------------------------------------CHHHHHHTEEEESCCCCCCSEEHHHH
T ss_pred ------------------------------------------------------ChHHHhCCEEEEcCCcccCccCHHHH
Confidence 77788999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 590 I~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+.++....+++++++++.+++.++..+.|.+++|.+ +|.+||||||||+||||||+++|+++
T Consensus 114 l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~ 193 (390)
T 3gd7_A 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193 (390)
T ss_dssp HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHH
T ss_pred hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 987666778899999999999999999999999988 78999999999999999999999976
Q ss_pred -------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
...++|+ +..+..||||+||++|+|+
T Consensus 194 l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~ 232 (390)
T 3gd7_A 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVR 232 (390)
T ss_dssp HHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEE
T ss_pred HHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEE
Confidence 1235562 3345669999999999984
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=337.06 Aligned_cols=184 Identities=29% Similarity=0.503 Sum_probs=161.3
Q ss_pred ccEEEEeeeEEeCCCC-CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 435 GTIKFKNVSLRYRDNW-PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 435 g~I~fknVsFsY~~~~-~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
+.|+++||+++|+++. .++|+|+||++++||++||+||||||||||+++|+|+++| +|+|.+||.++++.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~-------- 86 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKY-------- 86 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGB--------
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhc--------
Confidence 4699999999997542 4699999999999999999999999999999999999987 89999999998776
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
+...+|++++||||++.+|++|++||+.++
T Consensus 87 --------------------------------------------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~ 116 (260)
T 2ghi_A 87 --------------------------------------------------NRNSIRSIIGIVPQDTILFNETIKYNILYG 116 (260)
T ss_dssp --------------------------------------------------CHHHHHTTEEEECSSCCCCSEEHHHHHHTT
T ss_pred --------------------------------------------------CHHHHhccEEEEcCCCcccccCHHHHHhcc
Confidence 566789999999999999999999999864
Q ss_pred C-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 594 G-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 594 ~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
. ..+++++.++++.+++.+++..+|+|+||.+ ++.+||||||||++||||++++|+++
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 196 (260)
T 2ghi_A 117 KLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196 (260)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 3 3456788899999999999999999999987 68899999999999999999999976
Q ss_pred ----cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ++.++.||||++|++|+++
T Consensus 197 ~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIV 232 (260)
T ss_dssp HHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEE
T ss_pred HHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 1235663 3345669999999999974
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=336.83 Aligned_cols=186 Identities=25% Similarity=0.415 Sum_probs=161.1
Q ss_pred CccEEEEeeeEEeCC-CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 434 QGTIKFKNVSLRYRD-NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 434 ~g~I~fknVsFsY~~-~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.+.|+++||+++|++ +..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~------- 86 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY------- 86 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB-------
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC-------
Confidence 356999999999975 224699999999999999999999999999999999999999999999999998776
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+...+|++|+||||++.+|++|++||+.+
T Consensus 87 ---------------------------------------------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~ 115 (271)
T 2ixe_A 87 ---------------------------------------------------DHHYLHTQVAAVGQEPLLFGRSFRENIAY 115 (271)
T ss_dssp ---------------------------------------------------CHHHHHHHEEEECSSCCCCSSBHHHHHHT
T ss_pred ---------------------------------------------------CHHHHhccEEEEecCCccccccHHHHHhh
Confidence 55678899999999999999999999986
Q ss_pred CC-CCCh-HHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 593 FG-RCHD-TELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 593 ~~-~~sd-eeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
+. ...+ +++.++++..++.++++.+|+|+++.. .+.+||||||||++|||||+++|+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp TCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred hcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 53 2344 677888899999999999999999887 68899999999999999999999976
Q ss_pred -----cc---cccce------ecccccccEEEEEeCCeeC
Q psy845 652 -----KK---SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~---~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
.. .++|| ++.+..||||++|++|+++
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEE
T ss_pred HHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 11 26673 2334569999999999974
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=380.95 Aligned_cols=433 Identities=17% Similarity=0.205 Sum_probs=333.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccc---c-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy845 180 VYLRSVFQNMWSMLFAFLMICFVFPWFAL---P-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPW 252 (677)
Q Consensus 180 ~~~~~~~q~~~~~~f~~~~~~~~~~~f~~---~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~ 252 (677)
+...++..++...+|+|++.. ++.|||. | + .|+++|.+.+++.+ +..++.+++++..+++.+++++.++|.
T Consensus 775 ~~~~~~~~~lr~~l~~~ll~~-~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~-~~~l~~~~~~~~~~~~~~i~~~~~~~~ 852 (1284)
T 3g5u_A 775 KAGEILTKRLRYMVFKSMLRQ-DVSWFDDPKNTTGALTTRLANDAAQVKGAT-GSRLAVIFQNIANLGTGIIISLIYGWQ 852 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CSHHHHSCSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CHHHHcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333444455566899999986 6799974 3 3 55566666666654 346678888999999999888889998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 253 FALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSM 332 (677)
Q Consensus 253 lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 332 (677)
++++++.+.|+..+......+..+...+......+.......|+++|+++||+|++|+++.++|.+..+...+.......
T Consensus 853 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~ 932 (1284)
T 3g5u_A 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777666655555555544444444556677889999999999999999999999999988876655443333
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy845 333 AMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLV 410 (677)
Q Consensus 333 ~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~ 410 (677)
...........+..+ +.++++|.+++..|.++.+.+..++.+......++..+.....+++.+..+.+|+.++++. +
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~-~ 1011 (1284)
T 3g5u_A 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEK-T 1011 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 222222222222221 2334455556778888888888777777777777777777777788999999999999953 3
Q ss_pred CCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 411 PEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 411 ~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
++.+...+. ....++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+
T Consensus 1012 ~~~~~~~~~-------~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1012 PEIDSYSTQ-------GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp CSSSSCCSS-------CCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred Ccccccccc-------cccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 332211110 11112346789999999999864 3469999999999999999999999999999999999999
Q ss_pred CCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh
Q psy845 490 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 569 (677)
Q Consensus 490 p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR 569 (677)
|++|+|.+||+|+++++.+++|+++|+|||||.+|+++|+||-+
T Consensus 1085 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~------------------------------------ 1128 (1284)
T 3g5u_A 1085 PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA------------------------------------ 1128 (1284)
T ss_dssp CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHT------------------------------------
T ss_pred CCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHh------------------------------------
Confidence 99999999999999999999999999999999999998887721
Q ss_pred hhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhcc
Q psy845 570 SRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 570 ~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~ 647 (677)
+- .+....+++++++++++++++++++++|+||||.+ +|.+||||||||+|||||++++
T Consensus 1129 ----~~---------------~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A 1129 ----YG---------------DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp ----CC---------------CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred ----cc---------------CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence 10 01124578999999999999999999999999999 8999999999999999999999
Q ss_pred chhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 648 TKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 648 p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
|+++ ..+|+|+ ++++++||||+||++|+|+
T Consensus 1190 p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248 (1284)
T ss_dssp CSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEE
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 9987 1356772 6788999999999999985
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=309.75 Aligned_cols=172 Identities=25% Similarity=0.381 Sum_probs=146.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+.|+++||+++|+++..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 46999999999974445799999999999999999999999999999999999999999999876
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+++||||++.+|++|++||+.++.
T Consensus 70 --------------------------------------------------------~i~~v~q~~~~~~~tv~enl~~~~ 93 (229)
T 2pze_A 70 --------------------------------------------------------RISFCSQFSWIMPGTIKENIIFGV 93 (229)
T ss_dssp --------------------------------------------------------CEEEECSSCCCCSBCHHHHHHTTS
T ss_pred --------------------------------------------------------EEEEEecCCcccCCCHHHHhhccC
Confidence 257888888888889999998754
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------c--
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------K-- 652 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------~-- 652 (677)
...+.+..++++..++.+++..+|.+.++.+ ++.+||||||||++||||++++|+++ .
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l 173 (229)
T 2pze_A 94 SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173 (229)
T ss_dssp CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHC
T ss_pred CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHH
Confidence 4445556778888899999999999999877 68899999999999999999999866 0
Q ss_pred ----ccccce---ec---ccccccEEEEEeCCeeC
Q psy845 653 ----KSGVNI---TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----~~~~TI---Ls---TI~~aDrIlVLd~GrIV 677 (677)
.+++|| .| .++.||||++|++|+++
T Consensus 174 ~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 208 (229)
T 2pze_A 174 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSY 208 (229)
T ss_dssp CCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEE
T ss_pred HHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEE
Confidence 134563 22 34569999999999974
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-37 Score=309.47 Aligned_cols=171 Identities=24% Similarity=0.368 Sum_probs=145.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|+++..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------------
Confidence 3899999999974334699999999999999999999999999999999999999999999886
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR 595 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~ 595 (677)
+++||||++.+|+.|++||+.++..
T Consensus 67 -------------------------------------------------------~i~~v~Q~~~~~~~tv~enl~~~~~ 91 (237)
T 2cbz_A 67 -------------------------------------------------------SVAYVPQQAWIQNDSLRENILFGCQ 91 (237)
T ss_dssp -------------------------------------------------------CEEEECSSCCCCSEEHHHHHHTTSC
T ss_pred -------------------------------------------------------EEEEEcCCCcCCCcCHHHHhhCccc
Confidence 1577888888889999999987554
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-------------------cc-
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------KK- 653 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------~~- 653 (677)
.++++..++++.+++.+.+..+|.|++|.+ ++.+||||||||++||||++++|+++ ..
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 92 LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 455667778888888888888999998877 78999999999999999999999865 11
Q ss_pred ------cccce------ecccccccEEEEEeCCeeC
Q psy845 654 ------SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 654 ------~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+++|+ ++.+..||||++|++|+++
T Consensus 172 ~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 172 GPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKIS 207 (237)
T ss_dssp STTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEE
T ss_pred HHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEE
Confidence 25563 3345569999999999974
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=308.88 Aligned_cols=178 Identities=25% Similarity=0.387 Sum_probs=139.0
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|+++||+++|+++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~------ 75 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD------ 75 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH------
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHH------
Confidence 78999999997532 3599999999999999999999999999999999999999999999999999877211
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccccc-chhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
+.... |+++|||+|++.+|.. |++||+.+
T Consensus 76 -------------------------------------------------~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~ 106 (235)
T 3tif_A 76 -------------------------------------------------ELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106 (235)
T ss_dssp -------------------------------------------------HHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred -------------------------------------------------HHHHHhhccEEEEecCCccCCCCcHHHHHHH
Confidence 22223 4579999999999976 99999953
Q ss_pred C------CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 593 F------GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 593 ~------~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
. +..+ .+++.++++..++.+... +. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~--~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 107 PLIFKYRGAMSGEERRKRALECLKMAELEERFA------NH--KPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGT------TC--CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhh------hC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 1 1222 234566777777654321 11 46799999999999999999999976
Q ss_pred -------------ccc-ccce---e---cccccccEEEEEeCCeeC
Q psy845 652 -------------KKS-GVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~-~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| . ...+.||||++|++|+++
T Consensus 179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 112 6773 2 234569999999999984
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=315.43 Aligned_cols=176 Identities=26% Similarity=0.441 Sum_probs=142.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++..-
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~---------- 75 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYS---------- 75 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCS----------
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcc----------
Confidence 48999999999754 3599999999999999999999999999999999999999999999999998421
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~ 593 (677)
..+...+|+++|||||+| .+|+.|++||+.++
T Consensus 76 ----------------------------------------------~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~ 109 (275)
T 3gfo_A 76 ----------------------------------------------RKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG 109 (275)
T ss_dssp ----------------------------------------------HHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHH
T ss_pred ----------------------------------------------cccHHHHhCcEEEEEcCcccccccCcHHHHHHHH
Confidence 005567889999999987 57889999999643
Q ss_pred C---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+. +++.++++..++.++..+ ...+||||||||++|||||+.+|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~---------~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~ 180 (275)
T 3gfo_A 110 AVNMKLPEDEIRKRVDNALKRTGIEHLKDK---------PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180 (275)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 1 2222 346677888887654332 45789999999999999999999976
Q ss_pred ---------c-ccccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 ---------K-KSGVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~-~~~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
. .+|+|| . +.+. -||||++|++|+++
T Consensus 181 ~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~ 223 (275)
T 3gfo_A 181 EIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI 223 (275)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1 236773 2 3343 49999999999984
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=300.16 Aligned_cols=176 Identities=23% Similarity=0.383 Sum_probs=134.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 73 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK---------- 73 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----------
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC----------
Confidence 4899999999965 3699999999999999999999999999999999999999999999999998765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~~ 593 (677)
+..+ .|++++||||++.+|.+ |++||+.++
T Consensus 74 ------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~ 105 (240)
T 1ji0_A 74 ------------------------------------------------PAHVINRMGIALVPEGRRIFPELTVYENLMMG 105 (240)
T ss_dssp ------------------------------------------------CHHHHHHTTEEEECSSCCCCTTSBHHHHHHGG
T ss_pred ------------------------------------------------CHHHHHhCCEEEEecCCccCCCCcHHHHHHHh
Confidence 3333 35569999999999876 999999764
Q ss_pred C--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 594 G--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 594 ~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
. ..+.++..+.++. .++.++ |++... ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~-----~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 179 (240)
T 1ji0_A 106 AYNRKDKEGIKRDLEW-----IFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179 (240)
T ss_dssp GTTCCCSSHHHHHHHH-----HHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHH-----HHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 2 1222232222221 222222 222222 57899999999999999999999976
Q ss_pred ------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+++|| .|.. +.||||++|++|+++
T Consensus 180 ~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1246673 3332 349999999999974
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-36 Score=321.52 Aligned_cols=179 Identities=28% Similarity=0.369 Sum_probs=144.1
Q ss_pred ccEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 435 GTIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 435 g~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.-|+++||+++|+++ ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+.+.+..
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~---- 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES---- 98 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH----
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH----
Confidence 459999999999753 23699999999999999999999999999999999999999999999999999887211
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
....+|++||||+|++.+|. .|++||+.
T Consensus 99 ---------------------------------------------------~~~~~r~~Ig~v~Q~~~l~~~~TV~env~ 127 (366)
T 3tui_C 99 ---------------------------------------------------ELTKARRQIGMIFQHFNLLSSRTVFGNVA 127 (366)
T ss_dssp ---------------------------------------------------HHHHHHTTEEEECSSCCCCTTSCHHHHHH
T ss_pred ---------------------------------------------------HHHHHhCcEEEEeCCCccCCCCCHHHHHH
Confidence 34456889999999999985 59999996
Q ss_pred cCC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PFG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+.. ..+ ++++.++++.+++.+...+ ...+||||||||++|||||+.+|+++
T Consensus 128 ~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~---------~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~ 198 (366)
T 3tui_C 128 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDS---------YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198 (366)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC---------CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 431 222 2346778888887665433 45799999999999999999999976
Q ss_pred -----------c-ccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----------K-KSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~-~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
. ..|+|| .| .+. -||||+||++|+++
T Consensus 199 ~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv 243 (366)
T 3tui_C 199 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 243 (366)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1 126673 33 333 49999999999985
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=299.89 Aligned_cols=176 Identities=25% Similarity=0.276 Sum_probs=139.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~------- 74 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK------- 74 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHH-------
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHH-------
Confidence 3899999999965 3699999999999999999999999999999999999999999999999998765110
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccccccc-cchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+...+| ++++||||++.+|. .|++||+.+.
T Consensus 75 ------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~ 106 (224)
T 2pcj_A 75 ------------------------------------------------ELSLLRNRKLGFVFQFHYLIPELTALENVIVP 106 (224)
T ss_dssp ------------------------------------------------HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHhCcEEEEecCcccCCCCCHHHHHHhH
Confidence 223444 78999999998885 5999999642
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 177 (224)
T 2pcj_A 107 MLKMGKPKKEAKERGEYLLSELGLGDKLSR---------KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177 (224)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCTTCTTC---------CGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 1 111 2446677777777654322 45799999999999999999999976
Q ss_pred ---------cccccce---ec---ccccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---Ls---TI~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .++.||+|++|++|+++
T Consensus 178 ~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 178 RVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218 (224)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 1236673 22 24569999999999974
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=304.21 Aligned_cols=173 Identities=20% Similarity=0.277 Sum_probs=142.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~---------- 78 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSW---------- 78 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTS----------
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC----------
Confidence 5899999999975 3699999999999999999999999999999999999999999999999999887
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~ 594 (677)
+.+++|+.++|++|++.+ |+.|++||+.++.
T Consensus 79 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (266)
T 4g1u_C 79 ------------------------------------------------QPKALARTRAVMRQYSELAFPFSVSEVIQMGR 110 (266)
T ss_dssp ------------------------------------------------CHHHHHHHEEEECSCCCCCSCCBHHHHHHGGG
T ss_pred ------------------------------------------------CHHHHhheEEEEecCCccCCCCCHHHHHHhhh
Confidence 666778889999999877 5789999996542
Q ss_pred -----CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhc------cchhh------------
Q psy845 595 -----RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLR------KTKKK------------ 651 (677)
Q Consensus 595 -----~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr------~p~IL------------ 651 (677)
+..++++.++++..++.+...+ ...+||||||||++|||||++ +|+++
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 111 APYGGSQDRQALQQVMAQTDCLALAQR---------DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp TTSCSTTHHHHHHHHHHHTTCSTTTTS---------BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred hhcCcHHHHHHHHHHHHHcCChhHhcC---------CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 1234567788888887654332 346899999999999999999 99876
Q ss_pred ------------ccc-ccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ------------KKS-GVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~-~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. +. .||||++|++|+++
T Consensus 182 ~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~ 227 (266)
T 4g1u_C 182 HQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV 227 (266)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 112 3463 333 22 49999999999984
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=301.09 Aligned_cols=174 Identities=25% Similarity=0.304 Sum_probs=138.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|++ .++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+.+
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~--------- 75 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE--------- 75 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 4899999999965 36999999999999999999999999999999999999999999999999986651
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+.+..|++++||||++.+|. .|++||+.++.
T Consensus 76 ------------------------------------------------~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 107 (257)
T 1g6h_A 76 ------------------------------------------------PAELYHYGIVRTFQTPQPLKEMTVLENLLIGE 107 (257)
T ss_dssp ------------------------------------------------HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred ------------------------------------------------HHHHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence 23456778999999998885 69999996532
Q ss_pred C----------------CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 595 R----------------CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 595 ~----------------~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
. .+ .+++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGqkQrv~iAraL~~~p~lllLD 178 (257)
T 1g6h_A 108 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR---------KAGELSGGQMKLVEIGRALMTNPKMIVMD 178 (257)
T ss_dssp TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred hhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCC---------CchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1 11 1235566666666543222 46799999999999999999999976
Q ss_pred ---------------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 179 EPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 179 EPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 33 23 359999999999974
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=304.45 Aligned_cols=175 Identities=27% Similarity=0.414 Sum_probs=140.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~--------- 91 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AK--------- 91 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-ST---------
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Cc---------
Confidence 4999999999964 36999999999999999999999999999999999999999999999999875 20
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
..+...+|++++||||++.+|.. |++||+.++.
T Consensus 92 ----------------------------------------------~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~ 125 (263)
T 2olj_A 92 ----------------------------------------------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125 (263)
T ss_dssp ----------------------------------------------TCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred ----------------------------------------------cccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 00445678899999999999865 9999996521
Q ss_pred ----CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 ----RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 ----~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~---------~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (263)
T 2olj_A 126 MKVRKWPREKAEAKAMELLDKVGLKDKAHA---------YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196 (263)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTS---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCchHhcC---------ChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 222 2346778888887665322 45789999999999999999999976
Q ss_pred ---------cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+++|| .|. +. -||||++|++|+++
T Consensus 197 ~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 238 (263)
T 2olj_A 197 EVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII 238 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 332 33 49999999999974
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=303.27 Aligned_cols=174 Identities=24% Similarity=0.382 Sum_probs=140.9
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-+.|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~-------- 82 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-------- 82 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--------
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc--------
Confidence 357999999999964 3699999999999999999999999999999999999999999999999987542
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
...+|++++||||++.+|.+ |++||+.+
T Consensus 83 ---------------------------------------------------~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 111 (256)
T 1vpl_A 83 ---------------------------------------------------PHEVRKLISYLPEEAGAYRNMQGIEYLRF 111 (256)
T ss_dssp ---------------------------------------------------HHHHHTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred ---------------------------------------------------HHHHhhcEEEEcCCCCCCCCCcHHHHHHH
Confidence 23567889999999988865 99999965
Q ss_pred CC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
+. ..+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---------~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~ 182 (256)
T 1vpl_A 112 VAGFYASSSSEIEEMVERATEIAGLGEKIKD---------RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182 (256)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS---------BGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCchHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHH
Confidence 31 122 2456778888888765433 45789999999999999999999976
Q ss_pred ----------cccccce---ec---cccc-ccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TR---PVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---Ls---TI~~-aDrIlVLd~GrIV 677 (677)
..+++|| .| .+.. ||||++|++|+++
T Consensus 183 ~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 183 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE
Confidence 1236673 22 2344 9999999999974
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=299.17 Aligned_cols=171 Identities=27% Similarity=0.315 Sum_probs=138.9
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
++++||+++|+.+. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~--------- 73 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--------- 73 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---------
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---------
Confidence 78999999997222 369999999999999999999999999999999999999999999999988632
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
. .+|++++||||+| .+++.|++||+.
T Consensus 74 --------------------------------------------------~--~~~~~i~~v~q~~~~~~~~~tv~enl~ 101 (266)
T 2yz2_A 74 --------------------------------------------------Y--EIRRNIGIAFQYPEDQFFAERVFDEVA 101 (266)
T ss_dssp --------------------------------------------------H--HHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred --------------------------------------------------H--HhhhhEEEEeccchhhcCCCcHHHHHH
Confidence 1 5677888899986 567889999997
Q ss_pred cCCC------CChHHHHHHHHHccch--hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 592 PFGR------CHDTELWDALEKSHLK--SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 592 ~~~~------~sdeeI~~Al~~a~l~--efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
++.. ..++++.++++..++. ++..+. ..+||||||||++|||||+++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 172 (266)
T 2yz2_A 102 FAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV---------PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172 (266)
T ss_dssp HTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHH
Confidence 5321 1235688899999987 665443 3689999999999999999999976
Q ss_pred ------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. -||||++|++|+++
T Consensus 173 ~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~ 217 (266)
T 2yz2_A 173 GKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV 217 (266)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 22 344 39999999999974
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=313.78 Aligned_cols=175 Identities=26% Similarity=0.335 Sum_probs=140.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++ ..+|+|+||++++||.+||+||||||||||+|+|+|+.+|++|+|.+||.++.+.+
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~--------- 72 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKN--------- 72 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSS---------
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccc---------
Confidence 4899999999965 36999999999999999999999999999999999999999999999999984320
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
.+....|+++|||+|++.+|. .|++||+.++.
T Consensus 73 -----------------------------------------------~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l 105 (359)
T 3fvq_A 73 -----------------------------------------------TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGL 105 (359)
T ss_dssp -----------------------------------------------CBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTS
T ss_pred -----------------------------------------------cccchhhCCEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 012234678999999999985 69999997642
Q ss_pred C---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
. .+ ++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 106 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~r---------~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~ 176 (359)
T 3fvq_A 106 GNGKGRTAQERQRIEAMLELTGISELAGR---------YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ 176 (359)
T ss_dssp TTSSCCSHHHHHHHHHHHHHHTCGGGTTS---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHcCCchHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 11 2457778888888766544 34689999999999999999999976
Q ss_pred ---------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
...++|+ .|.. +-||||+||++|+|+
T Consensus 177 l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~ 218 (359)
T 3fvq_A 177 IREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL 218 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE
Confidence 1235663 3332 349999999999984
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=298.84 Aligned_cols=176 Identities=24% Similarity=0.323 Sum_probs=141.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc----------c
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS----------V 505 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~----------l 505 (677)
-++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4899999999964 369999999999999999999999999999999999999999999999998852 2
Q ss_pred cHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-
Q psy845 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584 (677)
Q Consensus 506 ~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg- 584 (677)
+ ..+...+|++++||||++.+|..
T Consensus 84 ~-------------------------------------------------------~~~~~~~~~~i~~v~Q~~~l~~~l 108 (262)
T 1b0u_A 84 D-------------------------------------------------------KNQLRLLRTRLTMVFQHFNLWSHM 108 (262)
T ss_dssp C-------------------------------------------------------HHHHHHHHHHEEEECSSCCCCTTS
T ss_pred C-------------------------------------------------------hhhHHHHhcceEEEecCcccCCCC
Confidence 0 00234578899999999998865
Q ss_pred chhhccccCC----CCC----hHHHHHHHHHccchhh-HhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----
Q psy845 585 TIRYNLDPFG----RCH----DTELWDALEKSHLKSK-VVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---- 651 (677)
Q Consensus 585 TIrENI~~~~----~~s----deeI~~Al~~a~l~ef-I~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---- 651 (677)
|++||+.++. ..+ ++++.++++..++.++ ..+ ...+||||||||++|||||+++|+++
T Consensus 109 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~~LSgGq~qRv~lAraL~~~p~lllLDE 179 (262)
T 1b0u_A 109 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK---------YPVHLSGGQQQRVSIARALAMEPDVLLFDE 179 (262)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS---------CGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999996521 122 2456778888888776 433 35689999999999999999999976
Q ss_pred --------------------cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+++|| .|. +. -||||++|++|+++
T Consensus 180 Pts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 332 33 49999999999974
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=301.41 Aligned_cols=173 Identities=22% Similarity=0.289 Sum_probs=138.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc--cccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA--SVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~--~l~~~~~~~~ 513 (677)
-++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++. +.
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~-------- 90 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGY-------- 90 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---C--------
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccC--------
Confidence 5999999999965 36999999999999999999999999999999999999999999999999886 44
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-ccc--chhhcc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNG--TIRYNL 590 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-Fsg--TIrENI 590 (677)
+..++|++++||||++.+ |.. |++||+
T Consensus 91 --------------------------------------------------~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl 120 (279)
T 2ihy_A 91 --------------------------------------------------SAETVRQHIGFVSHSLLEKFQEGERVIDVV 120 (279)
T ss_dssp --------------------------------------------------CHHHHHTTEEEECHHHHTTSCTTSBHHHHH
T ss_pred --------------------------------------------------CHHHHcCcEEEEEcCcccccCCCCCHHHHH
Confidence 455678889999999875 554 999999
Q ss_pred ccCCC--------CC---hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 591 DPFGR--------CH---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 591 ~~~~~--------~s---deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
.++.. .. .+++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~ 191 (279)
T 2ihy_A 121 ISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ---------YIGYLSTGEKQRVMIARALMGQPQVLILDEPAAG 191 (279)
T ss_dssp HTTC---------CCHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred HhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 75321 12 2346677777777654322 45789999999999999999999976
Q ss_pred ----------------cccccce-----ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ----------------KKSGVNI-----TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------~~~~~TI-----Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 192 LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 192 LDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI 242 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1124443 22 23 349999999999974
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=313.53 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=139.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++ ..+|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+.
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~---------- 70 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT---------- 70 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC----------
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCC----------
Confidence 4899999999965 3699999999999999999999999999999999999999999999999998776
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+.. +++||||+|++.||. .|++||+.++.
T Consensus 71 ------------------------------------------------~~~--~r~ig~VfQ~~~l~p~ltV~eni~~~~ 100 (381)
T 3rlf_A 71 ------------------------------------------------PPA--ERGVGMVFQSYALYPHLSVAENMSFGL 100 (381)
T ss_dssp ------------------------------------------------CGG--GSCEEEECTTCCCCTTSCHHHHHTHHH
T ss_pred ------------------------------------------------CHH--HCCEEEEecCCcCCCCCCHHHHHHHHH
Confidence 222 367889999988885 59999997531
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 101 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r---------~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~ 171 (381)
T 3rlf_A 101 KLAGAKKEVINQRVNQVAEVLQLAHLLDR---------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171 (381)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCGGGTTC---------CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 222 2456778888888765443 34689999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .|+|+ .|.. +-||||+||++|+++
T Consensus 172 l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~ 213 (381)
T 3rlf_A 172 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213 (381)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 11 25662 3332 349999999999984
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=308.18 Aligned_cols=171 Identities=23% Similarity=0.347 Sum_probs=140.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|++ ..+|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 70 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI---------- 70 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCC----------
Confidence 3899999999964 3699999999999999999999999999999999999999999999999998766
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+. .|+++|||+|++.+|. .|++||+.++.
T Consensus 71 ------------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 100 (359)
T 2yyz_A 71 ------------------------------------------------PP--KYREVGMVFQNYALYPHMTVFENIAFPL 100 (359)
T ss_dssp ------------------------------------------------CG--GGTTEEEECSSCCCCTTSCHHHHHHGGG
T ss_pred ------------------------------------------------Ch--hhCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 22 2567899999988885 59999997642
Q ss_pred C---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+ .+ ++++.++++..++.++..+. ..+||||||||++|||||+++|+++
T Consensus 101 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 171 (359)
T 2yyz_A 101 RARRISKDEVEKRVVEIARKLLIDNLLDRK---------PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI 171 (359)
T ss_dssp SSSCSHHHHTTHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 2 11 34678889999887765443 4689999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|.. .-||||+||++|+++
T Consensus 172 l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 172 MRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV 213 (359)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25662 3332 349999999999974
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=292.57 Aligned_cols=167 Identities=22% Similarity=0.257 Sum_probs=140.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++ ++|+|+||++++||++||+||||||||||+++|+|+++|+ |+|.+||.++.+.
T Consensus 5 l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~----------- 66 (249)
T 2qi9_C 5 MQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAW----------- 66 (249)
T ss_dssp EEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGS-----------
T ss_pred EEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcC-----------
Confidence 789999986 4999999999999999999999999999999999999999 9999999998776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~ 595 (677)
+..++|++++||||++.+|. .|++||+.++..
T Consensus 67 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 99 (249)
T 2qi9_C 67 -----------------------------------------------SATKLALHRAYLSQQQTPPFATPVWHYLTLHQH 99 (249)
T ss_dssp -----------------------------------------------CHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS
T ss_pred -----------------------------------------------CHHHHhceEEEECCCCccCCCCcHHHHHHHhhc
Confidence 56678889999999999886 499999976431
Q ss_pred --CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch-------hh---------------
Q psy845 596 --CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK-------KK--------------- 651 (677)
Q Consensus 596 --~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~-------IL--------------- 651 (677)
.+++++.++++..++.++..+ ...+||||||||++||||++++|+ ++
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~ 170 (249)
T 2qi9_C 100 DKTRTELLNDVAGALALDDKLGR---------STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170 (249)
T ss_dssp STTCHHHHHHHHHHTTCGGGTTS---------BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHH
T ss_pred cCCcHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHH
Confidence 236678889999988765432 467999999999999999999999 87
Q ss_pred ---------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +.||||++|++|+++
T Consensus 171 ~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 171 ALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 332 3 359999999999974
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=292.32 Aligned_cols=172 Identities=24% Similarity=0.235 Sum_probs=128.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~--------- 72 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL--------- 72 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS---------
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC---------
Confidence 789999999964 3699999999999999999999999999999999999 899999999999998776
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccccc-chhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
+..+. |+.++||+|++.+|.+ |++||+.+
T Consensus 73 -------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (250)
T 2d2e_A 73 -------------------------------------------------SPDERARKGLFLAFQYPVEVPGVTIANFLRL 103 (250)
T ss_dssp -------------------------------------------------CHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred -------------------------------------------------CHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence 33333 4568899999988864 89999854
Q ss_pred CC----C--CC----hHHHHHHHHHccch-hhHhhhhcccCCCCCCCC-CChHHHHHHHHHHHHhccchhh---------
Q psy845 593 FG----R--CH----DTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQ-LSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 593 ~~----~--~s----deeI~~Al~~a~l~-efI~~LP~GldT~v~G~~-LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
.. . .. ++++.++++..++. +...+ ...+ ||||||||++|||||+++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~L 174 (250)
T 2d2e_A 104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYLSR---------YLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL 174 (250)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGS---------BTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTT
T ss_pred HHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcC---------CcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 21 1 11 23456667776663 33221 2345 9999999999999999999976
Q ss_pred ---------------cccccce---ec---cccc--ccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVNI---TR---PVTS--CDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~TI---Ls---TI~~--aDrIlVLd~GrIV 677 (677)
..+++|| .| .+.. ||||++|++|+++
T Consensus 175 D~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~ 223 (250)
T 2d2e_A 175 DIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV 223 (250)
T ss_dssp CHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE
Confidence 1235663 33 3443 5999999999974
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=299.04 Aligned_cols=168 Identities=27% Similarity=0.421 Sum_probs=130.1
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
.+.++++||+++| .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------- 99 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------------
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------------
Confidence 3569999999864 3599999999999999999999999999999999999999999998875
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
+++||||++.+|++|++||+. +
T Consensus 100 ---------------------------------------------------------~i~~v~Q~~~l~~~tv~enl~-~ 121 (290)
T 2bbs_A 100 ---------------------------------------------------------RISFCSQNSWIMPGTIKENII-G 121 (290)
T ss_dssp ---------------------------------------------------------CEEEECSSCCCCSSBHHHHHH-T
T ss_pred ---------------------------------------------------------EEEEEeCCCccCcccHHHHhh-C
Confidence 257888888888889999997 4
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------c-
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------K- 652 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------~- 652 (677)
....+.+..++++..++.+.+..+|+++++.+ ++.+||||||||++||||++++|+++ .
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 201 (290)
T 2bbs_A 122 VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201 (290)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHH
Confidence 33344556678888899999999999999888 68899999999999999999999866 1
Q ss_pred -----ccccce---ec---ccccccEEEEEeCCeeC
Q psy845 653 -----KSGVNI---TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 -----~~~~TI---Ls---TI~~aDrIlVLd~GrIV 677 (677)
.+++|| .| .++.||||++|++|+++
T Consensus 202 ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 202 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSSY 237 (290)
T ss_dssp CCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred HHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEE
Confidence 125563 22 34569999999999974
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=308.49 Aligned_cols=175 Identities=25% Similarity=0.302 Sum_probs=139.8
Q ss_pred EEEEeeeEEeCCCCCc--cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWPL--VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~~--VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|++ .. +|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+.+
T Consensus 4 l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-------- 73 (353)
T 1oxx_K 4 IIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG-------- 73 (353)
T ss_dssp EEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT--------
T ss_pred EEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccc--------
Confidence 899999999964 35 999999999999999999999999999999999999999999999999986520
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+ .+....|+++|||+|++.+|. .|++||+.++
T Consensus 74 ------------------------------------------~-----~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 106 (353)
T 1oxx_K 74 ------------------------------------------K-----LIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106 (353)
T ss_dssp ------------------------------------------E-----ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGG
T ss_pred ------------------------------------------c-----ccCChhhCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 0 011224678999999999986 5999999764
Q ss_pred CC---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 GR---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~~---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
.+ .+ ++++.++++..++.++..+. ..+||||||||++|||||+++|+++
T Consensus 107 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~---------~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~ 177 (353)
T 1oxx_K 107 LTNMKMSKEEIRKRVEEVAKILDIHHVLNHF---------PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177 (353)
T ss_dssp GTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 22 22 34577888888887765443 4689999999999999999999976
Q ss_pred ---------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .|.. +-||||+||++|+++
T Consensus 178 ~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 01 25662 3332 349999999999974
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=308.17 Aligned_cols=171 Identities=25% Similarity=0.393 Sum_probs=138.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++|++++|++ .++|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 70 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL---------- 70 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC----------
Confidence 3899999999964 3699999999999999999999999999999999999999999999999998766
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+. .++++|||+|++.+|. .|++||+.++.
T Consensus 71 ------------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 100 (362)
T 2it1_A 71 ------------------------------------------------PP--KDRNVGLVFQNWALYPHMTVYKNIAFPL 100 (362)
T ss_dssp ------------------------------------------------CG--GGTTEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred ------------------------------------------------CH--hHCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 22 2467899999988885 59999997531
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 101 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 171 (362)
T 2it1_A 101 ELRKAPREEIDKKVREVAKMLHIDKLLNR---------YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171 (362)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCTTCTTC---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchHhhC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 122 2457778888888766444 34689999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .|.. +-||||+||++|+++
T Consensus 172 l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 213 (362)
T 2it1_A 172 VRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL 213 (362)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25662 3332 349999999999984
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=306.82 Aligned_cols=173 Identities=27% Similarity=0.371 Sum_probs=140.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|+++|++++|+++ .++|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+.
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~--------- 82 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL--------- 82 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC---------
T ss_pred ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC---------
Confidence 469999999999422 3699999999999999999999999999999999999999999999999998665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+. .|++++||+|++.+|. .|++||+.++
T Consensus 83 -------------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~ 111 (355)
T 1z47_A 83 -------------------------------------------------PP--QKRNVGLVFQNYALFQHMTVYDNVSFG 111 (355)
T ss_dssp -------------------------------------------------CG--GGSSEEEECGGGCCCTTSCHHHHHHHH
T ss_pred -------------------------------------------------Ch--hhCcEEEEecCcccCCCCCHHHHHHHH
Confidence 22 3578899999988885 5999999753
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++..++.++..+. ..+||||||||++|||||+++|+++
T Consensus 112 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~---------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~ 182 (355)
T 1z47_A 112 LREKRVPKDEMDARVRELLRFMRLESYANRF---------PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR 182 (355)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhHhcCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 122 34577888888887765443 4689999999999999999999976
Q ss_pred ---------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .|. + .-||||+||++|+++
T Consensus 183 ~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 183 ELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 332 2 349999999999974
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-34 Score=288.41 Aligned_cols=167 Identities=28% Similarity=0.364 Sum_probs=134.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ +|+|+||++++ |++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 65 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL----------- 65 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence 678999999952 59999999999 99999999999999999999999999999999999987554
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+ ..|++++||||++.+|.. |++||+.++..
T Consensus 66 -----------------------------------------------~--~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 96 (240)
T 2onk_A 66 -----------------------------------------------P--PERRGIGFVPQDYALFPHLSVYRNIAYGLR 96 (240)
T ss_dssp -----------------------------------------------C--TTTSCCBCCCSSCCCCTTSCHHHHHHTTCT
T ss_pred -----------------------------------------------c--hhhCcEEEEcCCCccCCCCcHHHHHHHHHH
Confidence 1 236789999999988865 99999976432
Q ss_pred C-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 596 C-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 596 ~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
. .++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~ 167 (240)
T 2onk_A 97 NVERVERDRRVREMAEKLGIAHLLDR---------KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167 (240)
T ss_dssp TSCHHHHHHHHHHHHHTTTCTTTTTC---------CGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHcCCHHHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 13456777887777654332 35689999999999999999999976
Q ss_pred -----cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + +.||||++|++|+++
T Consensus 168 ~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~ 206 (240)
T 2onk_A 168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV 206 (240)
T ss_dssp HHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 26673 333 2 349999999999974
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=305.17 Aligned_cols=169 Identities=25% Similarity=0.350 Sum_probs=139.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ . +|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+.
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~----------- 67 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL----------- 67 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC-----------
Confidence 689999999964 4 99999999999999999999999999999999999999999999999998665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
+. .|+++|||+|++.+|.. |++||+.++.
T Consensus 68 -----------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~enl~~~~~ 98 (348)
T 3d31_A 68 -----------------------------------------------SP--EKHDIAFVYQNYSLFPHMNVKKNLEFGMR 98 (348)
T ss_dssp -----------------------------------------------CH--HHHTCEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred -----------------------------------------------ch--hhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 22 36789999999988864 9999997531
Q ss_pred ---CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 595 ---RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 595 ---~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
...++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 99 ~~~~~~~~~v~~~l~~~~L~~~~~~---------~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~ 169 (348)
T 3d31_A 99 MKKIKDPKRVLDTARDLKIEHLLDR---------NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169 (348)
T ss_dssp HHCCCCHHHHHHHHHHTTCTTTTTS---------CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHcCCchHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 1123678888999988766444 34689999999999999999999976
Q ss_pred ----cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ----KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .|.. +-||||+||++|+++
T Consensus 170 l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~ 207 (348)
T 3d31_A 170 LSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (348)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 3332 349999999999974
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=307.11 Aligned_cols=171 Identities=23% Similarity=0.304 Sum_probs=135.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++ ..+|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+.
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 78 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL---------- 78 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCC----------
Confidence 4999999999964 3699999999999999999999999999999999999999999999999998766
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+. .++++|||+|++.+|. .|++||+.++.
T Consensus 79 ------------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 108 (372)
T 1v43_A 79 ------------------------------------------------PP--KDRNISMVFQSYAVWPHMTVYENIAFPL 108 (372)
T ss_dssp ------------------------------------------------CG--GGGTEEEEEC------CCCHHHHHHTTC
T ss_pred ------------------------------------------------Ch--hhCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 22 2467899999998885 59999997643
Q ss_pred C---CCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R---CHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~---~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+ .+. +++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 109 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 179 (372)
T 1v43_A 109 KIKKFPKDEIDKRVRWAAELLQIEELLNR---------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 179 (372)
T ss_dssp C--CCCHHHHHHHHHHHHHHTTCGGGTTS---------CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHH
Confidence 2 222 357778888888766444 34699999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|.. +-||||+||++|+++
T Consensus 180 l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 180 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25662 3332 349999999999974
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=305.80 Aligned_cols=177 Identities=25% Similarity=0.305 Sum_probs=138.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++ .++|+|+||++++||.+||+||||||||||+|+|+|+.+|++|+|.+||.++.+.. +++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-----~~~- 74 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE-----KGI- 74 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGG-----GTE-
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcccc-----ccc-
Confidence 3899999999964 36999999999999999999999999999999999999999999999999986510 000
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+ .+. .|+++|||+|++.+|. .|++||+.++.
T Consensus 75 -------------------------------------------~---~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 106 (372)
T 1g29_1 75 -------------------------------------------F---VPP--KDRDIAMVFQSYALYPHMTVYDNIAFPL 106 (372)
T ss_dssp -------------------------------------------E---CCG--GGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred -------------------------------------------c---CCH--hHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 0 021 2578999999999984 69999997531
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||+||||||+++|+++
T Consensus 107 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 177 (372)
T 1g29_1 107 KLRKVPRQEIDQRVREVAELLGLTELLNR---------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR 177 (372)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTCGGGTTC---------CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchHhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 222 2456778888888766443 34689999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|.. +-||||+||++|+++
T Consensus 178 l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 219 (372)
T 1g29_1 178 MRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219 (372)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE
Confidence 11 25662 3332 349999999999974
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=288.30 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=129.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhhh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.-++++||+++|++ .++|+|+||++++||++||+||||||||||+|+|+|+ ++|++|+|.+||.++.+.
T Consensus 19 ~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~------- 89 (267)
T 2zu0_C 19 HMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL------- 89 (267)
T ss_dssp -CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGS-------
T ss_pred ceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcC-------
Confidence 35999999999964 3699999999999999999999999999999999999 679999999999998776
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccccc-chhhcc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFNG-TIRYNL 590 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFsg-TIrENI 590 (677)
+.+.. |+.++||+|++.+|.+ |++||+
T Consensus 90 ---------------------------------------------------~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~ 118 (267)
T 2zu0_C 90 ---------------------------------------------------SPEDRAGEGIFMAFQYPVEIPGVSNQFFL 118 (267)
T ss_dssp ---------------------------------------------------CHHHHHHHTEEEECSSCCCCTTCBHHHHH
T ss_pred ---------------------------------------------------CHHHHhhCCEEEEccCccccccccHHHHH
Confidence 22222 4457778888777754 777777
Q ss_pred ccC--------C--CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 591 DPF--------G--RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 591 ~~~--------~--~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
... + ..++ +++.++++..++.+.. .+.. -+.+||||||||++|||||+++|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~-~~~~LSgGq~QRv~iAraL~~~p~lLlLDEP 191 (267)
T 2zu0_C 119 QTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL------LTRS-VNVGFSGGEKKRNDILQMAVLEPELCILDES 191 (267)
T ss_dssp HHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTT------TTSB-TTTTCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred HHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhH------hcCC-cccCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 421 0 1122 2355566666553210 1111 12369999999999999999999976
Q ss_pred -------------------cccccce---ec---cccc--ccEEEEEeCCeeC
Q psy845 652 -------------------KKSGVNI---TR---PVTS--CDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------------~~~~~TI---Ls---TI~~--aDrIlVLd~GrIV 677 (677)
..+++|| .| .+.. ||||++|++|+++
T Consensus 192 ts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 192 DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp TTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE
Confidence 1235673 22 3443 8999999999974
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.98 E-value=6.9e-33 Score=277.95 Aligned_cols=141 Identities=21% Similarity=0.392 Sum_probs=118.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++||+++|++ ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----------- 74 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----------- 74 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----------
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----------
Confidence 46999999999964 5999999999999999999999999999999999999999999999998752
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~ 593 (677)
..|++++||||++.+|.+ |++||+.++
T Consensus 75 ----------------------------------------------------~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 75 ----------------------------------------------------KVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp ----------------------------------------------------GGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred ----------------------------------------------------hhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 136678888888888865 999999643
Q ss_pred ----C-CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 594 ----G-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 594 ----~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+ +..++++.++++..++.+. .+ .+.+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gl~~~-~~---------~~~~LSgGqkqrv~laraL~~~p~ll 155 (214)
T 1sgw_A 103 ASLYGVKVNKNEIMDALESVEVLDL-KK---------KLGELSQGTIRRVQLASTLLVNAEIY 155 (214)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTCCCT-TS---------BGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred HHhcCCchHHHHHHHHHHHcCCCcC-CC---------ChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 1 2235667888888887654 22 46799999999999999999999976
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-32 Score=283.32 Aligned_cols=167 Identities=22% Similarity=0.280 Sum_probs=135.1
Q ss_pred EEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++|++++|+++ ..++|+|+||+++ ||++||+||||||||||+++|+|++ |++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--------- 70 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--------- 70 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC---------
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch---------
Confidence 6899999999641 1369999999999 9999999999999999999999999 9999999999886431
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcc-cccccccccccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS-VIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~-~V~Qd~~LFsgTIrENI~~~ 593 (677)
+. |++++ ||||++.+ +.|++||+.++
T Consensus 71 ---------------------------------------------------~~-~~~i~~~v~Q~~~l-~~tv~enl~~~ 97 (263)
T 2pjz_A 71 ---------------------------------------------------RN-YIRYSTNLPEAYEI-GVTVNDIVYLY 97 (263)
T ss_dssp ---------------------------------------------------SC-CTTEEECCGGGSCT-TSBHHHHHHHH
T ss_pred ---------------------------------------------------HH-hhheEEEeCCCCcc-CCcHHHHHHHh
Confidence 12 67889 99999988 89999999653
Q ss_pred C---CCChHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 594 G---RCHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 594 ~---~~sdeeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
. +..++++.++++..++. +...+ ...+||||||||++||||++++|+++
T Consensus 98 ~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 168 (263)
T 2pjz_A 98 EELKGLDRDLFLEMLKALKLGEEILRR---------KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168 (263)
T ss_dssp HHHTCCCHHHHHHHHHHTTCCGGGGGS---------BGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHcCCChhHhcC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHH
Confidence 2 34466788888888876 54322 46799999999999999999999976
Q ss_pred ----cccccce---ecc---c-cccc-EEEEEeCCeeC
Q psy845 652 ----KKSGVNI---TRP---V-TSCD-KVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI---LsT---I-~~aD-rIlVLd~GrIV 677 (677)
.... |+ .|. + +.|| ||++|++|+++
T Consensus 169 ~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~ 205 (263)
T 2pjz_A 169 RYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQ 205 (263)
T ss_dssp HHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEE
T ss_pred HHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEE
Confidence 1122 62 332 3 3599 99999999974
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-32 Score=277.52 Aligned_cols=159 Identities=22% Similarity=0.317 Sum_probs=126.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|. .
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~--------~---------- 64 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------V---------- 64 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE--------E----------
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE--------E----------
Confidence 38999999999722 3699999999999999999999999999999999999999999997 1
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
|++++||||++.+| +.|++||+.++.
T Consensus 65 -----------------------------------------------------~~~i~~v~q~~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 65 -----------------------------------------------------YQSIGFVPQFFSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp -----------------------------------------------------CSCEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred -----------------------------------------------------eccEEEEcCCCccCCCCCHHHHHHHhh
Confidence 23467777777766 679999986532
Q ss_pred C--------CC---hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 R--------CH---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 ~--------~s---deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
. .. ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~ 162 (253)
T 2nq2_C 92 STHINTFAKPKSHDYQVAMQALDYLNLTHLAKR---------EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162 (253)
T ss_dssp GGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChHHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 11 2457778888888765433 45799999999999999999999976
Q ss_pred ------------ccc-ccce---ecc---c-ccccEEEEEeCCe
Q psy845 652 ------------KKS-GVNI---TRP---V-TSCDKVLVMDNGQ 675 (677)
Q Consensus 652 ------------~~~-~~TI---LsT---I-~~aDrIlVLd~Gr 675 (677)
..+ ++|| .|. + +.||||++|++|+
T Consensus 163 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 112 6673 332 3 3599999999997
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-30 Score=295.81 Aligned_cols=104 Identities=24% Similarity=0.286 Sum_probs=80.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccC--CCC-ChHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPF--GRC-HDTEL 601 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~--~~~-sdeeI 601 (677)
+.+|.||||||||+++|.|+.+|++|+|.+ +.+++||||++.+ ++.|++||+... ... ..+.+
T Consensus 386 ~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 452 (607)
T 3bk7_A 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYK 452 (607)
T ss_dssp EEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHH
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHH
Confidence 566889999999999999999999999987 2479999999876 578999998532 111 12335
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.++++..++.+... . ...+||||||||++|||||+++|+++
T Consensus 453 ~~~l~~~~l~~~~~-------~--~~~~LSGGe~QRv~iAraL~~~p~lL 493 (607)
T 3bk7_A 453 TELLKPLGIIDLYD-------R--NVEDLSGGELQRVAIAATLLRDADIY 493 (607)
T ss_dssp HHTHHHHTCTTTTT-------S--BGGGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHHHcCCchHhc-------C--ChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 55666666543321 1 45799999999999999999999976
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-32 Score=288.31 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=154.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCC-CCccEEE
Q psy845 361 GSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWP-RQGTIKF 439 (677)
Q Consensus 361 G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~-~~g~I~f 439 (677)
+..+-+.+.+++.+..+ ..++..+...+..++++..+.+|+.++++.. ++...+ . ..++ ..+.|++
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~-~~~~~~-~----------~~~~~~~~~i~~ 104 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKAR-CKLATG-E----------GSWKSILTFFNY 104 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHCCS-S----------CCTHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccCC-C----------CcccccCCeEEE
Confidence 33444556666666555 4788999999999999999999999998532 221111 0 0111 1245899
Q ss_pred EeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccC
Q psy845 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 519 (677)
Q Consensus 440 knVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q 519 (677)
+||+|+|+ .++|+|+||+|++||++|||||||||||||+++|+|++ +|+|.
T Consensus 105 ~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~----------------------- 155 (305)
T 2v9p_A 105 QNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL----------------------- 155 (305)
T ss_dssp TTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-----------------------
T ss_pred EEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-----------------------
Confidence 99999997 36999999999999999999999999999999999999 78772
Q ss_pred CccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh-ccccCCCCCh
Q psy845 520 DPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY-NLDPFGRCHD 598 (677)
Q Consensus 520 ~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE-NI~~~~~~sd 598 (677)
++++|++.+|++|++| ||.+..+.++
T Consensus 156 -----------------------------------------------------~~v~q~~~lf~~ti~~~ni~~~~~~~~ 182 (305)
T 2v9p_A 156 -----------------------------------------------------SFANHKSHFWLASLADTRAALVDDATH 182 (305)
T ss_dssp -----------------------------------------------------CGGGTTSGGGGGGGTTCSCEEEEEECH
T ss_pred -----------------------------------------------------EEecCccccccccHHHHhhccCccccH
Confidence 3467888999999997 9987544443
Q ss_pred HHHHHHHHHccchhhHhh-hhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhccccc---c---e------ecccccc
Q psy845 599 TELWDALEKSHLKSKVVT-MRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKKSGV---N---I------TRPVTSC 665 (677)
Q Consensus 599 eeI~~Al~~a~l~efI~~-LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~~~~---T---I------LsTI~~a 665 (677)
+++++++. +|+|+| |.+|||||||| |||++++|+++...+. + + +++++.|
T Consensus 183 ----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~~ltH~~~~~~~a 245 (305)
T 2v9p_A 183 ----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFE 245 (305)
T ss_dssp ----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGGGGTTTEEEEECC
T ss_pred ----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHHHHhCCHHHHHhC
Confidence 34567777 899998 88999999999 9999999998842111 1 1 4567789
Q ss_pred cEEEEEeCCeeC
Q psy845 666 DKVLVMDNGQAL 677 (677)
Q Consensus 666 DrIlVLd~GrIV 677 (677)
||| ||++|+++
T Consensus 246 D~i-vl~~G~iv 256 (305)
T 2v9p_A 246 QPC-TDESGEQP 256 (305)
T ss_dssp CCC-CCC---CC
T ss_pred CEE-EEeCCEEE
Confidence 999 99999985
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-30 Score=290.42 Aligned_cols=104 Identities=26% Similarity=0.317 Sum_probs=79.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccC--CCC-ChHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPF--GRC-HDTEL 601 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~--~~~-sdeeI 601 (677)
+.+|.||||||||+++|.|+.+|++|+|.+ +.+++||||++.. ++.|+.||+... ... ..+++
T Consensus 316 ~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 382 (538)
T 1yqt_A 316 GIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYK 382 (538)
T ss_dssp EEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHH
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHH
Confidence 455789999999999999999999999986 2469999999977 578999998532 111 12334
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.++++..++.+.. +. ...+||||||||++|||||+++|+++
T Consensus 383 ~~~l~~~~l~~~~-------~~--~~~~LSGGe~qrv~lAraL~~~p~lL 423 (538)
T 1yqt_A 383 TELLKPLGIIDLY-------DR--EVNELSGGELQRVAIAATLLRDADIY 423 (538)
T ss_dssp HHTTTTTTCGGGT-------TS--BGGGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHHHcCChhhh-------cC--ChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 4455555544322 11 45799999999999999999999976
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=273.03 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=94.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhcccc--CCC-CChHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDP--FGR-CHDTEL 601 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~--~~~-~sdeeI 601 (677)
+.+|.||||||||+++|.|+.+|++|+.. -+..++++||+... |++|++||+.. .+. ...+..
T Consensus 382 ~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-------------~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 448 (608)
T 3j16_B 382 VMMGENGTGKTTLIKLLAGALKPDEGQDI-------------PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQ 448 (608)
T ss_dssp EEESCTTSSHHHHHHHHHTSSCCSBCCCC-------------CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHH
T ss_pred EEECCCCCcHHHHHHHHhcCCCCCCCcCc-------------cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHH
Confidence 45689999999999999999999999721 13479999999654 68899999842 112 233445
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------c---cccc
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------K---KSGV 656 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------~---~~~~ 656 (677)
.++++..++.+.. |. ...+||||||||++|||||.++|+++ . ..++
T Consensus 449 ~~~l~~l~l~~~~-------~~--~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~ 519 (608)
T 3j16_B 449 TDVVKPLRIDDII-------DQ--EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK 519 (608)
T ss_dssp HHTHHHHTSTTTS-------SS--BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCChhhh-------cC--ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 6677777665432 22 45799999999999999999999976 1 1356
Q ss_pred ce---eccc----ccccEEEEEeC--Cee
Q psy845 657 NI---TRPV----TSCDKVLVMDN--GQA 676 (677)
Q Consensus 657 TI---LsTI----~~aDrIlVLd~--GrI 676 (677)
|| .|.+ .-||||+||++ |++
T Consensus 520 tviivtHdl~~~~~~aDrvivl~~~~g~~ 548 (608)
T 3j16_B 520 TAFIVEHDFIMATYLADKVIVFEGIPSKN 548 (608)
T ss_dssp EEEEECSCHHHHHHHCSEEEECEEETTTE
T ss_pred EEEEEeCCHHHHHHhCCEEEEEeCCCCeE
Confidence 63 3332 24999999996 654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=256.56 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=68.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++|+|+++..++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|. .+++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 38999999999764356999999999999999999999999999999999999999999999862 2589
Q ss_pred cccCCcc
Q psy845 516 VIPQDPV 522 (677)
Q Consensus 516 ~v~q~~~ 522 (677)
|++|++.
T Consensus 740 yv~Q~~~ 746 (986)
T 2iw3_A 740 YIKQHAF 746 (986)
T ss_dssp EECHHHH
T ss_pred eeccchh
Confidence 9999874
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-24 Score=243.59 Aligned_cols=135 Identities=22% Similarity=0.291 Sum_probs=104.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++|++++|++ ..+++.|+++++||++||+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 330 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-------------- 330 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC--------------
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe--------------
Confidence 35899999999964 4688889999999999999999999999999999999999999987653
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~ 593 (677)
.++++||++.. +..|++||+...
T Consensus 331 --------------------------------------------------------~i~~~~q~~~~~~~~tv~~~l~~~ 354 (538)
T 3ozx_A 331 --------------------------------------------------------ILSYKPQRIFPNYDGTVQQYLENA 354 (538)
T ss_dssp --------------------------------------------------------CEEEECSSCCCCCSSBHHHHHHHH
T ss_pred --------------------------------------------------------eeEeechhcccccCCCHHHHHHHh
Confidence 23445555443 367888887532
Q ss_pred C-C---CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 594 G-R---CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 594 ~-~---~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
. . ...+...++++..++.+...+ ...+||||||||++|||||+++|+++
T Consensus 355 ~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSGGq~QRv~iAraL~~~p~lL 407 (538)
T 3ozx_A 355 SKDALSTSSWFFEEVTKRLNLHRLLES---------NVNDLSGGELQKLYIAATLAKEADLY 407 (538)
T ss_dssp CSSTTCTTSHHHHHTTTTTTGGGCTTS---------BGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhccchhHHHHHHHHHHcCCHHHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 1 1 223345666666666543322 45799999999999999999999976
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-23 Score=239.84 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=91.6
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHH---------------------HHHhcCCCCC-------ccEEEECCEec
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLL---------------------VALFRLVELS-------SGQIKIDDFDI 502 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi---------------------~LL~r~y~p~-------~G~I~IdG~dI 502 (677)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4699999999999999999999999999998 8999999998 45666666654
Q ss_pred ccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-
Q psy845 503 ASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL- 581 (677)
Q Consensus 503 ~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L- 581 (677)
... -++++|+++|.+.++. .++.++++++|....
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~ 145 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLR-----------------------------------------LLFARIGRLVGGKHIG 145 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------------------------------------------
T ss_pred hcc----chhceeeeechhhhHH-----------------------------------------HHHhhhcccccccccc
Confidence 332 3667888888765443 344556666655433
Q ss_pred --cccchhhccccCCCC--Ch--HHH-----HHHHHHccchhhHhhhhcccCCC---CCCCCCChHHHHHHHHHHHHhcc
Q psy845 582 --FNGTIRYNLDPFGRC--HD--TEL-----WDALEKSHLKSKVVTMRSKLDSD---VQGDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 582 --FsgTIrENI~~~~~~--sd--eeI-----~~Al~~a~l~efI~~LP~GldT~---v~G~~LSGGQRQRIaIARALLr~ 647 (677)
...|++||+.++... .+ .+. .++.+.. +.++.+ |++.. -...+||||||||++|||||+.+
T Consensus 146 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~ 220 (670)
T 3ux8_A 146 EVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSR 220 (670)
T ss_dssp -----CC--------------------------CHHHH---HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTC
T ss_pred cccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 356999999754211 11 111 1111111 111111 22211 14679999999999999999999
Q ss_pred ch--hh------------------------cccccce---e---cccccccEEEEE------eCCeeC
Q psy845 648 TK--KK------------------------KKSGVNI---T---RPVTSCDKVLVM------DNGQAL 677 (677)
Q Consensus 648 p~--IL------------------------~~~~~TI---L---sTI~~aDrIlVL------d~GrIV 677 (677)
|+ ++ ..++.|| . ..+..||||++| ++|+++
T Consensus 221 p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~ 288 (670)
T 3ux8_A 221 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVV 288 (670)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEE
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEE
Confidence 87 65 1235663 2 234569999999 788864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-23 Score=237.37 Aligned_cols=229 Identities=21% Similarity=0.180 Sum_probs=126.5
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh---------------------cCCCCCccEEEECC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF---------------------RLVELSSGQIKIDD 499 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~---------------------r~y~p~~G~I~IdG 499 (677)
+..+.+.+....+|+|+||+|++||++||+||||||||||+++++ +-+.+.+|.|.++|
T Consensus 325 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~ 404 (670)
T 3ux8_A 325 GRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQ 404 (670)
T ss_dssp SCEEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCS
T ss_pred ccceeecCccccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEecc
Confidence 344445433346999999999999999999999999999998764 11234457899999
Q ss_pred EecccccHHHhhhhcccccCCccccccccccCCCC----CchhH-HHHHHhhhhccccccccccchh----------hhh
Q psy845 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAG----KSSLL-VALFRLVELSSGQIKIDDFDIA----------SVE 564 (677)
Q Consensus 500 ~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~----~~~~~-~~~~~~~~~~~g~i~~~~~~~~----------~~~ 564 (677)
.++...+.....+..++++|...+|..+..+...| .-++- ....+......|.++.+-.-.. ...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~ 484 (670)
T 3ux8_A 405 SPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKR 484 (670)
T ss_dssp SCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCC
T ss_pred ccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcc
Confidence 98876654444444454444433433211000000 00000 0000000001111111100000 000
Q ss_pred HHHHhhhccccccccccc-ccchhhccccCCCCC-hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHH
Q psy845 565 LETLRSRLSVIPQDPVLF-NGTIRYNLDPFGRCH-DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 565 ~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~~s-deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIAR 642 (677)
...-+..+++.+|+...+ +.|++||+.+..... .++..++++..++.+. ..+. ...+||||||||++|||
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~------~~~~--~~~~LSgG~~qrv~iAr 556 (670)
T 3ux8_A 485 YNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYM------KLGQ--PATTLSGGEAQRVKLAA 556 (670)
T ss_dssp BCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTS------BTTC--CGGGCCHHHHHHHHHHH
T ss_pred cChhhhheeecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchh------hccC--CchhCCHHHHHHHHHHH
Confidence 111222445555555443 579999997654322 2334445555544211 0111 56799999999999999
Q ss_pred HHhccch---hh------------------------cccccce------ecccccccEEEEE------eCCeeC
Q psy845 643 ALLRKTK---KK------------------------KKSGVNI------TRPVTSCDKVLVM------DNGQAL 677 (677)
Q Consensus 643 ALLr~p~---IL------------------------~~~~~TI------LsTI~~aDrIlVL------d~GrIV 677 (677)
||+++|+ ++ ..+|+|| ++.++.||||+|| ++|+|+
T Consensus 557 aL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~ 630 (670)
T 3ux8_A 557 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIV 630 (670)
T ss_dssp HHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEE
T ss_pred HHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEE
Confidence 9998873 54 1246673 3345679999999 899985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=229.56 Aligned_cols=158 Identities=22% Similarity=0.298 Sum_probs=117.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..+...|++++|++ ..+|+|+||++++||++||+||||||||||+++|+| |+| +|.+...
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~---------- 493 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE---------- 493 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT----------
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc----------
Confidence 36888899999965 369999999999999999999999999999999995 543 4433210
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-cc-cccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VL-FNGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~L-FsgTIrENI~~ 592 (677)
+.+++|++|++ .+ .+.|+.||+..
T Consensus 494 ------------------------------------------------------~~~~~~v~q~~~~~~~~ltv~e~l~~ 519 (986)
T 2iw3_A 494 ------------------------------------------------------ECRTVYVEHDIDGTHSDTSVLDFVFE 519 (986)
T ss_dssp ------------------------------------------------------TSCEEETTCCCCCCCTTSBHHHHHHT
T ss_pred ------------------------------------------------------ceeEEEEcccccccccCCcHHHHHHH
Confidence 01256777764 33 35688999853
Q ss_pred C-CCCChHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 593 F-GRCHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 593 ~-~~~sdeeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
. ... ++++.++++..|+. +...+ ...+||||||||++||||++++|+++
T Consensus 520 ~~~~~-~~~v~~~L~~lgL~~~~~~~---------~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~ 589 (986)
T 2iw3_A 520 SGVGT-KEAIKDKLIEFGFTDEMIAM---------PISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN 589 (986)
T ss_dssp TCSSC-HHHHHHHHHHTTCCHHHHHS---------BGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHH
T ss_pred hhcCH-HHHHHHHHHHcCCChhhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 1 112 67788899999884 33322 34689999999999999999999976
Q ss_pred --cccccce---ecc---c-ccccEEEEEeCCee
Q psy845 652 --KKSGVNI---TRP---V-TSCDKVLVMDNGQA 676 (677)
Q Consensus 652 --~~~~~TI---LsT---I-~~aDrIlVLd~GrI 676 (677)
...++|+ .|. + .-||||++|++|++
T Consensus 590 ~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 590 YLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp HHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEECCHHHHHHhCCEEEEEECCee
Confidence 1145663 232 2 24999999999997
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-24 Score=204.74 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHH
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVA 541 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~ 541 (677)
+++||||+||||||||+++|+|+|+|+ .|+|++||.++.+++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~---------------------------------- 48 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDK---------------------------------- 48 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCc----------------------------------
Confidence 689999999999999999999999998 8999999999877610
Q ss_pred HHHhhhhccccccccccchhhhhHHHHh-hhcc----cccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhh
Q psy845 542 LFRLVELSSGQIKIDDFDIASVELETLR-SRLS----VIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVT 616 (677)
Q Consensus 542 ~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~----~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~ 616 (677)
...+++| ++++ +++|++.+| +++ .+++. .+++++++.+
T Consensus 49 ---------------------~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--------~~~~~-----~a~l~~~i~~ 91 (171)
T 2f1r_A 49 ---------------------EGKDSWKIYNSGADVVIASPVKLAF---IRR--------VSEEE-----GNDLDWIYER 91 (171)
T ss_dssp -----------------------CHHHHHHHHTCEEEEECSSEEEE---EEE--------CCHHH-----HTCHHHHHHH
T ss_pred ---------------------cchhHHHHHhcCCceEEECCCcEEE---Eec--------CChhh-----hhCHHHHHHh
Confidence 0245677 4788 899999988 332 12222 7899999999
Q ss_pred -hhcccCCCC-CCCCCChHHHHHHHHHHHHhccchhhc
Q psy845 617 -MRSKLDSDV-QGDQLSLGEKQLLCLARALLRKTKKKK 652 (677)
Q Consensus 617 -LP~GldT~v-~G~~LSGGQRQRIaIARALLr~p~IL~ 652 (677)
+| |+||.+ .| |||||||||+||||++++|++..
T Consensus 92 ~l~-g~dt~i~Eg--lSgGq~qri~lARall~~p~i~~ 126 (171)
T 2f1r_A 92 YLS-DYDLVITEG--FSKAGKDRIVVVKKPEEVEHFRQ 126 (171)
T ss_dssp HTT-TCSEEEEES--CGGGCCCEEEECSSGGGGGGGCS
T ss_pred hCC-CCCEEEECC--cCCCCCcEEEEEecccCCCccCc
Confidence 99 999998 44 99999999999999999999853
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-24 Score=234.58 Aligned_cols=131 Identities=15% Similarity=0.013 Sum_probs=91.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-E-EEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-Q-IKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~-I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|+ |+||++++||+++|+||||||||||+|+|+|++.|++| + |.+|| + .++++
T Consensus 119 i~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i 181 (460)
T 2npi_A 119 KYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPI 181 (460)
T ss_dssp HHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCS
T ss_pred hhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCe
Confidence 55666666663 78999999999999999999999999999999999999 9 99987 1 13344
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+++||+..+|. ..-..|++||+ ++.
T Consensus 182 ~~vpq~~~l~~------------------------------------------------------~~~~~tv~eni-~~~ 206 (460)
T 2npi_A 182 FTVPGCISATP------------------------------------------------------ISDILDAQLPT-WGQ 206 (460)
T ss_dssp SSCSSCCEEEE------------------------------------------------------CCSCCCTTCTT-CSC
T ss_pred eeeccchhhcc------------------------------------------------------cccccchhhhh-ccc
Confidence 44444443322 00024777777 432
Q ss_pred CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHH--Hhccchh
Q psy845 595 RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA--LLRKTKK 650 (677)
Q Consensus 595 ~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARA--LLr~p~I 650 (677)
.. .++++.++++..|+.+. .+..+||||||||+++||| |+++|++
T Consensus 207 ~~~~~~~~~~~~~~ll~~~gl~~~-----------~~~~~LSgGq~qrlalAra~rL~~~p~i 258 (460)
T 2npi_A 207 SLTSGATLLHNKQPMVKNFGLERI-----------NENKDLYLECISQLGQVVGQRLHLDPQV 258 (460)
T ss_dssp BCBSSCCSSCCBCCEECCCCSSSG-----------GGCHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccccCcchHHHHHHHHHHhCCCcc-----------cchhhhhHHHHHHHHHHHHHHhccCccc
Confidence 21 11222233334443322 2356899999999999999 9999998
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-23 Score=204.14 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=103.8
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH-HHhhhhcccccCCcccccccccc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~-~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
.-|+|+||++++||++||+||||||||||+++|+|++ | |+|.+ |+++...+. ...++.+++++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~---- 82 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED---- 82 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH----
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH----
Confidence 3699999999999999999999999999999999999 6 99999 887754322 2246788888888766641
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccc
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHL 610 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l 610 (677)
.++|+.+++.+++++|. ++ .+++++.++++....
T Consensus 83 -------------------------------------------~~~~~~~l~~~~~~~~~-~g--~~~~~i~~~l~~~~~ 116 (218)
T 1z6g_A 83 -------------------------------------------KLKNEDFLEYDNYANNF-YG--TLKSEYDKAKEQNKI 116 (218)
T ss_dssp -------------------------------------------HHHTTCEEEEEEETTEE-EE--EEHHHHHHHHHTTCE
T ss_pred -------------------------------------------hhhccchhhhhhccccc-CC--CcHHHHHHHHhCCCc
Confidence 13577888888888883 22 234556666665332
Q ss_pred hhhHhhhhcccCCCCCCCCCChHHHHHHHH-----HHHHhccchhhccccc-------c---e---ecc---------cc
Q psy845 611 KSKVVTMRSKLDSDVQGDQLSLGEKQLLCL-----ARALLRKTKKKKKSGV-------N---I---TRP---------VT 663 (677)
Q Consensus 611 ~efI~~LP~GldT~v~G~~LSGGQRQRIaI-----ARALLr~p~IL~~~~~-------T---I---LsT---------I~ 663 (677)
. +-..+||||||||+++ ||+++++|++..+..+ | | +.. +.
T Consensus 117 ~-------------il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~ 183 (218)
T 1z6g_A 117 C-------------LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLL 183 (218)
T ss_dssp E-------------EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred E-------------EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 1 1125899999999999 8999999987622111 1 2 111 25
Q ss_pred cccEEEEEeC
Q psy845 664 SCDKVLVMDN 673 (677)
Q Consensus 664 ~aDrIlVLd~ 673 (677)
.||+|+|+++
T Consensus 184 ~~d~iiv~~~ 193 (218)
T 1z6g_A 184 NFNLSIINDD 193 (218)
T ss_dssp CCSEEEECSS
T ss_pred CCCEEEECCC
Confidence 7999999886
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-21 Score=218.88 Aligned_cols=170 Identities=17% Similarity=0.184 Sum_probs=113.3
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE-----------EECCEecccccHHH
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI-----------KIDDFDIASVELET 509 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I-----------~IdG~dI~~l~~~~ 509 (677)
++..+|+.+. ..|.++.. .++||.+||+||||||||||+|+|+|++.|++|+| .++|.++..+....
T Consensus 4 ~~~~~~~~~~-f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTTS-CEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCCc-eeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 4567887652 33443332 45899999999999999999999999999999987 22332221110000
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.. .....+..+.+++|.+.++.+|++++
T Consensus 82 ~~----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~ 109 (538)
T 3ozx_A 82 YS----------------------------------------------------NELKIVHKIQYVEYASKFLKGTVNEI 109 (538)
T ss_dssp HT----------------------------------------------------TCCCEEEECSCTTGGGTTCCSBHHHH
T ss_pred hh----------------------------------------------------cccchhhccchhhhhhhhccCcHHHH
Confidence 00 00012334667778888888999998
Q ss_pred cccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 590 I~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
+... ...++..++++..++.+.. |. ...+||||||||++|||||+++|+++
T Consensus 110 l~~~--~~~~~~~~~l~~l~l~~~~-------~~--~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~ 178 (538)
T 3ozx_A 110 LTKI--DERGKKDEVKELLNMTNLW-------NK--DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178 (538)
T ss_dssp HHHH--CCSSCHHHHHHHTTCGGGT-------TS--BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred hhcc--hhHHHHHHHHHHcCCchhh-------cC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 7521 1233466778888775542 22 34689999999999999999999976
Q ss_pred -----cccccce---eccc----ccccEEEEEeCCe
Q psy845 652 -----KKSGVNI---TRPV----TSCDKVLVMDNGQ 675 (677)
Q Consensus 652 -----~~~~~TI---LsTI----~~aDrIlVLd~Gr 675 (677)
..+++|| .|.+ .-||+|.||++|.
T Consensus 179 ~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 179 KAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 1236663 2322 2399999999764
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-20 Score=200.67 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=66.9
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE-CCEecccccHHHhhhhcccccCCccccccccccC
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI-DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I-dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n 531 (677)
+++|+||++++| +++|+||||||||||+++|.++..+.+++-.+ .|.+ .++|.+. |. ..+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~------------~~~v~~~---~~---~~~ 110 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEK------------ELLVTGF---WG---DGD 110 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCS------------EEEEEEE---C-------
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCC------------eEEEEEE---EE---ecC
Confidence 799999999999 99999999999999999998877654321111 0100 0111100 00 000
Q ss_pred CCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhh-cccccccccccccchhhc
Q psy845 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR-LSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~-I~~V~Qd~~LFsgTIrEN 589 (677)
+ |....+. ..+..++.|+++++|.+++..+..++++. +++++|++.++-++-.++
T Consensus 111 ~-~~~~~l~--r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~ 166 (415)
T 4aby_A 111 E-SEADSAS--RRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQ 166 (415)
T ss_dssp -----CEEE--EEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHH
T ss_pred C-CceEEEE--EEEecCCceEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHH
Confidence 0 0000000 00112456677777777776667777666 678888877776554433
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.9e-20 Score=215.95 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=29.0
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
..|+|+||+|++||.+||+||||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 589999999999999999999999999997
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-22 Score=218.25 Aligned_cols=147 Identities=16% Similarity=0.079 Sum_probs=110.0
Q ss_pred EEEeeeEE---eCCCCCccc---------cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 438 KFKNVSLR---YRDNWPLVL---------ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 438 ~fknVsFs---Y~~~~~~VL---------knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+|+||+|+ |++.++++| +++|+++++|+.++|+|||||||||++++|+|+++|++|.|.++|. +++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 89999999 965333566 9999999999999999999999999999999999999999999874 343
Q ss_pred cHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccc-ccccc---
Q psy845 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP-QDPVL--- 581 (677)
Q Consensus 506 ~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~-Qd~~L--- 581 (677)
....+|+.+++++ |++.+
T Consensus 215 ----------------------------------------------------------~~~~~~~~v~~v~~q~~~~~~~ 236 (361)
T 2gza_A 215 ----------------------------------------------------------FLPDHPNHVHLFYPSEAKEEEN 236 (361)
T ss_dssp ----------------------------------------------------------CCTTCSSEEEEECC--------
T ss_pred ----------------------------------------------------------CccccCCEEEEeecCccccccc
Confidence 2223466788888 88776
Q ss_pred cccchhhccccC-CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHH
Q psy845 582 FNGTIRYNLDPF-GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARAL 644 (677)
Q Consensus 582 FsgTIrENI~~~-~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARAL 644 (677)
+..|+++||+.. ...+|..+..+++.++++++++++|.|++|.+ -+.+-+.+..+|+.....-
T Consensus 237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 237 APVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp --CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 788999999643 22344444444555667789999999999977 4556688889999887653
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-19 Score=211.24 Aligned_cols=46 Identities=28% Similarity=0.440 Sum_probs=40.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHH-HhcC
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVA-LFRL 487 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~L-L~r~ 487 (677)
..++++|+++ .+|+|+||+|++||++||+|+||||||||++. |+|.
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 4599999985 27999999999999999999999999999996 6644
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-18 Score=206.13 Aligned_cols=44 Identities=27% Similarity=0.404 Sum_probs=39.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
..++++|++. .+|+|+||+|++||.+||+|+||||||||++.++
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3588999862 3799999999999999999999999999999864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-20 Score=183.14 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=37.7
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~ 496 (677)
.+|+|+ ++||++||+||||||||||+++|+|+ +|++|+|.
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 589995 89999999999999999999999999 99999983
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-21 Score=200.65 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=109.3
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeE-----------------------EeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFR-----------------------INHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~-----------------------I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
++.|+++||++.|. ++++++|+. +++|+++||+||||||||||+++|+|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45799999999994 578888775 899999999999999999999999999988
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 570 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~ 570 (677)
++|+ +
T Consensus 117 ~~G~---------------------------------------------------------------------------~ 121 (312)
T 3aez_A 117 WDHH---------------------------------------------------------------------------P 121 (312)
T ss_dssp STTC---------------------------------------------------------------------------C
T ss_pred cCCC---------------------------------------------------------------------------C
Confidence 7552 2
Q ss_pred hcccccccccccccchhhccccCC--CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccc
Q psy845 571 RLSVIPQDPVLFNGTIRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKT 648 (677)
Q Consensus 571 ~I~~V~Qd~~LFsgTIrENI~~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p 648 (677)
++++|+||++++..|++||+.... ...+. .+...+.+.++.+.+|.. .....+|||||+||+++|||++.+|
T Consensus 122 ~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~-----~d~~~~~~~L~~l~~~~~-~~~~~~lS~G~~qRv~~a~al~~~p 195 (312)
T 3aez_A 122 RVDLVTTDGFLYPNAELQRRNLMHRKGFPES-----YNRRALMRFVTSVKSGSD-YACAPVYSHLHYDIIPGAEQVVRHP 195 (312)
T ss_dssp CEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG-----BCHHHHHHHHHHHHTTCS-CEEEEEEETTTTEEEEEEEEEECSC
T ss_pred eEEEEecCccCCcccHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhCCCcc-cCCcccCChhhhhhhhhHHHhccCC
Confidence 356777777777778888875421 11111 001112334445554443 1234689999999999999999999
Q ss_pred hhhcccccce-e----ccc-ccccEEEEEe
Q psy845 649 KKKKKSGVNI-T----RPV-TSCDKVLVMD 672 (677)
Q Consensus 649 ~IL~~~~~TI-L----sTI-~~aDrIlVLd 672 (677)
+++...+-+. . ..+ ..+|..++++
T Consensus 196 ~ilIlDep~~~~d~~~~~l~~~~D~~I~V~ 225 (312)
T 3aez_A 196 DILILEGLNVLQTGPTLMVSDLFDFSLYVD 225 (312)
T ss_dssp SEEEEECTTTTCCCSSCCGGGGCSEEEEEE
T ss_pred CEEEECCccccCCcchHHHHHhcCcEEEEE
Confidence 9997766653 2 122 3367666664
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=173.32 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=117.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc-------HH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-------LE 508 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~-------~~ 508 (677)
+++++| -.+|+ +++++++++| ..+|+||||||||||+++|..+.....|.- ..+...+++- ..
T Consensus 5 ~L~i~n-fr~~~-------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s-~r~~~~~~li~~g~~~~~~ 74 (322)
T 1e69_A 5 KLYLKG-FKSFG-------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKE-LRASEKFDMIFAGSENLPP 74 (322)
T ss_dssp EEEEES-BTTBC-------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC-----------CCTTBCCCBTTBCC
T ss_pred EEEEeC-ceeec-------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhh-cccccHHHhhccCccCCCC
Confidence 477777 23453 2468888899 999999999999999999997752222110 0000000000 00
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIR 587 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIr 587 (677)
.-.-.+...+++.. ..-.+.+ +++.+++|+++++|.+++..+..++++.+++.||+..++ +|++.
T Consensus 75 ~~~~~v~~~f~~~~-~~~~i~r-------------~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~ 140 (322)
T 1e69_A 75 AGSAYVELVFEENG-EEITVAR-------------ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQID 140 (322)
T ss_dssp CSEEEEEEEEESSS-CEEEEEE-------------EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHH
T ss_pred CceEEEEEEEEeCC-eEEEEEE-------------EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHH
Confidence 00001111111100 0000000 123455678899998887778888888999999998776 89999
Q ss_pred hccccCCC----C------------ChHHHHHHHHHc------------cch-hhHhhhhcccCCCC--------CCCCC
Q psy845 588 YNLDPFGR----C------------HDTELWDALEKS------------HLK-SKVVTMRSKLDSDV--------QGDQL 630 (677)
Q Consensus 588 ENI~~~~~----~------------sdeeI~~Al~~a------------~l~-efI~~LP~GldT~v--------~G~~L 630 (677)
+|+....+ . +.+++.+..+.. .+. +..+.++.|+++.+ ...+|
T Consensus 141 ~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l 220 (322)
T 1e69_A 141 RIVNASPEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLL 220 (322)
T ss_dssp HHHTC---------------------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGS
T ss_pred HHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhC
Confidence 98853211 0 011122221110 000 01123455666542 35699
Q ss_pred ChHHHHHHHHHHHHh----ccchhh-----------------------cccccc-e--e---cccccccEE--EEEeCCe
Q psy845 631 SLGEKQLLCLARALL----RKTKKK-----------------------KKSGVN-I--T---RPVTSCDKV--LVMDNGQ 675 (677)
Q Consensus 631 SGGQRQRIaIARALL----r~p~IL-----------------------~~~~~T-I--L---sTI~~aDrI--lVLd~Gr 675 (677)
|||||||++||||+. ++|+++ ..++.| | . ...+.||++ ++|++|+
T Consensus 221 S~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~ 300 (322)
T 1e69_A 221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGV 300 (322)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSC
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCE
Confidence 999999999999996 677765 113445 2 2 234569987 8899986
Q ss_pred e
Q psy845 676 A 676 (677)
Q Consensus 676 I 676 (677)
-
T Consensus 301 s 301 (322)
T 1e69_A 301 S 301 (322)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-18 Score=193.82 Aligned_cols=164 Identities=23% Similarity=0.234 Sum_probs=122.4
Q ss_pred EeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccC
Q psy845 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 519 (677)
Q Consensus 440 knVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q 519 (677)
+|++++|++. ..+|+|+| ++++||++
T Consensus 95 ~~ls~~yg~~-~~~l~~vs-~i~~Ge~~---------------------------------------------------- 120 (607)
T 3bk7_A 95 EDCVHRYGVN-AFVLYRLP-IVKDGMVV---------------------------------------------------- 120 (607)
T ss_dssp GSEEEECSTT-CCEEECCC-CCCTTSEE----------------------------------------------------
T ss_pred CCeEEEECCC-CeeeCCCC-CCCCCCEE----------------------------------------------------
Confidence 8999999654 25899999 99999843
Q ss_pred CccccccccccCCCCCchhHHHHHHhhhhccccc---------cccccchhhhhHH--HHhhhccccccccc----cccc
Q psy845 520 DPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI---------KIDDFDIASVELE--TLRSRLSVIPQDPV----LFNG 584 (677)
Q Consensus 520 ~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i---------~~~~~~~~~~~~~--~LR~~I~~V~Qd~~----LFsg 584 (677)
+.+|.||||||||+++|.|+.+|++|++ .++|.++.+.... ..+..+++++|+.. ++.+
T Consensus 121 ------~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 194 (607)
T 3bk7_A 121 ------GIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 194 (607)
T ss_dssp ------EEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCS
T ss_pred ------EEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccc
Confidence 5689999999999999999999999997 5677776553222 22346778887643 4457
Q ss_pred chhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 585 TIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
|++||+... ...+++.++++..++.+...+ ...+||||||||++|||||+++|+++
T Consensus 195 tv~e~l~~~--~~~~~~~~~L~~lgL~~~~~~---------~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~ 263 (607)
T 3bk7_A 195 KVRELLKKV--DEVGKFEEVVKELELENVLDR---------ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263 (607)
T ss_dssp BHHHHHHHT--CCSSCHHHHHHHTTCTTGGGS---------BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred cHHHHhhhh--HHHHHHHHHHHHcCCCchhCC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 999998632 123457778888887654332 34689999999999999999999976
Q ss_pred -----------cccccce---ecc---cc-cccEEEEEeCC
Q psy845 652 -----------KKSGVNI---TRP---VT-SCDKVLVMDNG 674 (677)
Q Consensus 652 -----------~~~~~TI---LsT---I~-~aDrIlVLd~G 674 (677)
...+.|| .|. +. -||||++|++|
T Consensus 264 ~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 1236663 332 22 38999999975
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-19 Score=200.16 Aligned_cols=168 Identities=10% Similarity=0.135 Sum_probs=118.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCE---ecccccHHHhh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF---DIASVELETLR 511 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~---dI~~l~~~~~~ 511 (677)
+.++++|+++.|+.+ ..+|+++ |++++||++||+||||||||||+++|+|+++|+.|.|.++|+ +++++..
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~---- 203 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIE---- 203 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHH----
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHH----
Confidence 468899999999743 3699999 999999999999999999999999999999999999999998 4433200
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccc--ccccccchhhc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD--PVLFNGTIRYN 589 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd--~~LFsgTIrEN 589 (677)
...+...+++.+++|+|+ +.....|+.+|
T Consensus 204 -------------------------------------------------~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~ 234 (438)
T 2dpy_A 204 -------------------------------------------------NILGPDGRARSVVIAAPADVSPLLRMQGAAY 234 (438)
T ss_dssp -------------------------------------------------TTTHHHHHHTEEEEEECTTSCHHHHHHHHHH
T ss_pred -------------------------------------------------hhccccccCceEEEEECCCCCHHHHHHHHHH
Confidence 000245678889999984 33446788888
Q ss_pred cccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 590 I~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
+... .|.... +..++.++++ ...+||+|| ||++|| +++|++.
T Consensus 235 ~~~~-----ae~~~~-~~~~v~~~ld----------~l~~lS~g~-qrvslA---l~~p~~t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 235 ATRI-----AEDFRD-RGQHVLLIMD----------SLTRYAMAQ-REIALA---IGEPPATKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp HHHH-----HHHHHT-TTCEEEEEEE----------CHHHHHHHH-HHHHHH---TTCCCCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHH-----HHHHHh-CCCCHHHHHH----------hHHHHHHHH-HHHHHH---hCCCcccccCCHHHHHHHHHHHHHH
Confidence 7531 111110 0111111111 356899999 999999 8888642
Q ss_pred cc---c-cc-----ce---ecc--cccccEEEEEeCCeeC
Q psy845 652 KK---S-GV-----NI---TRP--VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ~~---~-~~-----TI---LsT--I~~aDrIlVLd~GrIV 677 (677)
.. + |+ |+ .|. ...||++++|++|+|+
T Consensus 295 ~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 295 GNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIV 334 (438)
T ss_dssp SCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEE
T ss_pred HhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEE
Confidence 12 1 43 43 222 3448999999999974
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-18 Score=190.73 Aligned_cols=167 Identities=22% Similarity=0.228 Sum_probs=121.0
Q ss_pred EEE-EeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 437 IKF-KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 437 I~f-knVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++ +||+++|++. ..+|+|+| ++++||++
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~------------------------------------------------ 50 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVV------------------------------------------------ 50 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEE------------------------------------------------
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEE------------------------------------------------
Confidence 345 5999999753 25899999 99999944
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccc---------cccccchhhhhHHH--Hhhhcccccccccc---
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI---------KIDDFDIASVELET--LRSRLSVIPQDPVL--- 581 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i---------~~~~~~~~~~~~~~--LR~~I~~V~Qd~~L--- 581 (677)
+.+|.||||||||+++|.|+.+|++|++ .++|.++....... .+..+++++|+..+
T Consensus 51 ----------~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 120 (538)
T 1yqt_A 51 ----------GIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPK 120 (538)
T ss_dssp ----------EEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGG
T ss_pred ----------EEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcch
Confidence 5689999999999999999999999997 56777766532222 23467888887544
Q ss_pred -cccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 582 -FNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 582 -FsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
+.+|++||+.... ..+++.++++..++.+... . ...+||||||||++|||||+++|+++
T Consensus 121 ~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~-------~--~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~L 189 (538)
T 1yqt_A 121 AVKGKVIELLKKAD--ETGKLEEVVKALELENVLE-------R--EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189 (538)
T ss_dssp GCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTT-------S--BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred hhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhh-------C--ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 3468999885311 1345677888887754322 1 35689999999999999999999976
Q ss_pred ---------------cccccce---ecc---cc-cccEEEEEeCC
Q psy845 652 ---------------KKSGVNI---TRP---VT-SCDKVLVMDNG 674 (677)
Q Consensus 652 ---------------~~~~~TI---LsT---I~-~aDrIlVLd~G 674 (677)
...++|| .|. +. -||||++|++|
T Consensus 190 D~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 190 DIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 1235663 232 22 39999999875
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-20 Score=193.98 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=54.1
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
++|++| | +++++++|+++++|+.++|+|||||||||++++|+|+++|++|.|.++|.+
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 778888 7 259999999999999999999999999999999999999999999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-17 Score=186.73 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=97.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccc-----------cccccchhhhhHHHHhhhcccc--ccc----cccccc---c
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQI-----------KIDDFDIASVELETLRSRLSVI--PQD----PVLFNG---T 585 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i-----------~~~~~~~~~~~~~~LR~~I~~V--~Qd----~~LFsg---T 585 (677)
+.+|.||||||||+++|.|+.+|++|+| +++|.+..+.....+++.+..+ +|. +..+.+ +
T Consensus 107 ~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (608)
T 3j16_B 107 GLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQK 186 (608)
T ss_dssp EEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSH
T ss_pred EEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhH
Confidence 5689999999999999999999999998 5666666555444555555432 222 211212 4
Q ss_pred hhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 586 IrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
+.+++....+..++++.++++..++.+...+ ...+||||||||++|||||+++|+++
T Consensus 187 v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~ 257 (608)
T 3j16_B 187 VGELLKLRMEKSPEDVKRYIKILQLENVLKR---------DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257 (608)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHTCTGGGGS---------CTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHcCCcchhCC---------ChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHH
Confidence 5555533223345678888888887654332 35799999999999999999999976
Q ss_pred ----------cccccce---ecc---c-ccccEEEEEeCCe
Q psy845 652 ----------KKSGVNI---TRP---V-TSCDKVLVMDNGQ 675 (677)
Q Consensus 652 ----------~~~~~TI---LsT---I-~~aDrIlVLd~Gr 675 (677)
..+++|| .|. + .-||||+||++|.
T Consensus 258 ~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 258 LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 1235663 332 2 2399999999865
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-18 Score=185.79 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=100.7
Q ss_pred cccceeeEEeC--CcEEEEEcCCCCChHHHHHHHhcCCCCCc----cEEEEC----CEecccccHHHhhhhcccccCCcc
Q psy845 453 VLANVSFRINH--GENIGIVGRTGAGKSSLLVALFRLVELSS----GQIKID----DFDIASVELETLRSRLSVIPQDPV 522 (677)
Q Consensus 453 VLknISl~I~~--GE~VAIVGpSGSGKSTLi~LL~r~y~p~~----G~I~Id----G~dI~~l~~~~~~~~i~~v~q~~~ 522 (677)
+.+.|++++++ |+++||+||||||||||+++|+|+++|++ |+|.++ |.++ .
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~------------------ 217 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-A------------------ 217 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-S------------------
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-c------------------
Confidence 46789999999 99999999999999999999999999998 666543 2221 1
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHH
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTEL 601 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI 601 (677)
.+.+++ ++|++++|++.+|++|++||+.++. +..+...
T Consensus 218 ----------------------------------------~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~ 256 (365)
T 1lw7_A 218 ----------------------------------------MQYSDY-PQMALGHQRYIDYAVRHSHKIAFIDTDFITTQA 256 (365)
T ss_dssp ----------------------------------------SCTTTH-HHHHHHHHHHHHHHHHHCSSEEEESSCHHHHHH
T ss_pred ----------------------------------------CChhHH-HHHHHHHHHHHHHHHhccCCEEEEeCCchHHHH
Confidence 123334 5699999999999999999997643 3345556
Q ss_pred HHHHHHccchhhHhhhhcc--cCCCC----------CCCCCChHHHHHHHHHHHH---hc--cchhhcc
Q psy845 602 WDALEKSHLKSKVVTMRSK--LDSDV----------QGDQLSLGEKQLLCLARAL---LR--KTKKKKK 653 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~G--ldT~v----------~G~~LSGGQRQRIaIARAL---Lr--~p~IL~~ 653 (677)
+......+...++.+++.+ ++..+ +|.++|+||+||.+++|++ ++ +++++..
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilil 325 (365)
T 1lw7_A 257 FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEI 325 (365)
T ss_dssp HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEE
T ss_pred HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 6666666777788887765 43311 4567999999999999999 66 6666633
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-19 Score=183.50 Aligned_cols=175 Identities=19% Similarity=0.210 Sum_probs=102.4
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-ccEEEECCEecccccHHHhhhhccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-SGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+++|+++. ++|+|+| +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++..+ .+...++
T Consensus 7 ~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~----~~~~~~~ 74 (261)
T 2eyu_A 7 EFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV----FKHKKSI 74 (261)
T ss_dssp CGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSSSE
T ss_pred ChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----cCCccee
Confidence 45566642 4999999 8999999999999999999999999999998 99999999887544 1333455
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
++|+. ++ -...++-.+|.+...-+---|.+|-+. +.+..+..+....+...++.-| .
T Consensus 75 v~q~~------~g---l~~~~l~~~la~aL~~~p~illlDEp~----D~~~~~~~l~~~~~g~~vl~t~----------H 131 (261)
T 2eyu_A 75 VNQRE------VG---EDTKSFADALRAALREDPDVIFVGEMR----DLETVETALRAAETGHLVFGTL----------H 131 (261)
T ss_dssp EEEEE------BT---TTBSCHHHHHHHHHHHCCSEEEESCCC----SHHHHHHHHHHHHTTCEEEEEE----------C
T ss_pred eeHHH------hC---CCHHHHHHHHHHHHhhCCCEEEeCCCC----CHHHHHHHHHHHccCCEEEEEe----------C
Confidence 55521 11 001233333333322222234444442 2222222111111111111000 0
Q ss_pred ChHHHHHHHHH-ccch------hhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchh
Q psy845 597 HDTELWDALEK-SHLK------SKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKK 650 (677)
Q Consensus 597 sdeeI~~Al~~-a~l~------efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~I 650 (677)
+.+ ..++++. ..+. ..-..+++++++.+ ++.++|+| ||+++||+++.+|++
T Consensus 132 ~~~-~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i 191 (261)
T 2eyu_A 132 TNT-AIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAI 191 (261)
T ss_dssp CSS-HHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHH
T ss_pred cch-HHHHHHHHhhhcCccccchHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHH
Confidence 001 1112221 1111 11235788999988 78899999 999999999999998
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-18 Score=179.13 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=64.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~ 545 (677)
++|||||||||||||+|+|+|+..|++|+|.++|.++..-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---------------------------------------- 43 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---------------------------------------- 43 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC----------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc----------------------------------------
Confidence 6899999999999999999999999999999999876332
Q ss_pred hhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCC
Q psy845 546 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSD 624 (677)
Q Consensus 546 ~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~ 624 (677)
..++.+++++|++.++. .|+.||+.++.....++.++.++.....++...++
T Consensus 44 ---------------------~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~------ 96 (270)
T 3sop_A 44 ---------------------VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLK------ 96 (270)
T ss_dssp ---------------------CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHH------
T ss_pred ---------------------eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhH------
Confidence 12467888888887774 59999997654332222222222222233333332
Q ss_pred CCCCCCChHHHHHHHHHHHHhc
Q psy845 625 VQGDQLSLGEKQLLCLARALLR 646 (677)
Q Consensus 625 v~G~~LSGGQRQRIaIARALLr 646 (677)
.+||||||||+++|||+..
T Consensus 97 ---~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 97 ---EEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp ---HHSCTTCCSSCCCCSCCEE
T ss_pred ---HhcCcccchhhhhheeeee
Confidence 4799999999999999754
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-17 Score=181.40 Aligned_cols=121 Identities=21% Similarity=0.180 Sum_probs=93.3
Q ss_pred CccccceeeEEeCCc--------------------EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHh
Q psy845 451 PLVLANVSFRINHGE--------------------NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 451 ~~VLknISl~I~~GE--------------------~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~ 510 (677)
+.+|+|+|+++++|| .+||+||||||||||+|+|+|+++|++|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999998886531
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
| .++++|++...+.|+.||+
T Consensus 109 ----------------------------------------------------------~--~~~v~q~~~~~~ltv~D~~ 128 (413)
T 1tq4_A 109 ----------------------------------------------------------M--ERHPYKHPNIPNVVFWDLP 128 (413)
T ss_dssp ----------------------------------------------------------C--CCEEEECSSCTTEEEEECC
T ss_pred ----------------------------------------------------------e--eEEeccccccCCeeehHhh
Confidence 1 1567777654467888888
Q ss_pred ccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChH--HHHHHHHHHHHhc----------cchhh
Q psy845 591 DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLG--EKQLLCLARALLR----------KTKKK 651 (677)
Q Consensus 591 ~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGG--QRQRIaIARALLr----------~p~IL 651 (677)
.++. .++++.+.++..++.+. +..+ . +||| ||||++||||+.+ +|+++
T Consensus 129 g~~~--~~~~~~~~L~~~~L~~~--------~~~~--~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 129 GIGS--TNFPPDTYLEKMKFYEY--------DFFI--I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp CGGG--SSCCHHHHHHHTTGGGC--------SEEE--E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred cccc--hHHHHHHHHHHcCCCcc--------CCeE--E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 6542 23456777777776432 2211 2 8999 9999999999999 88766
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-18 Score=183.64 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=98.5
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-ccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|..+|.++. +
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~------------------------- 177 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y------------------------- 177 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S-------------------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h-------------------------
Confidence 4678776 7999999999999999999999999999998 899977665442 1
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc-----cccccccchhhccccCCCC-------Ch
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ-----DPVLFNGTIRYNLDPFGRC-------HD 598 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q-----d~~LFsgTIrENI~~~~~~-------sd 598 (677)
.+|+++++|+| ++..|++++++|++...+. ++
T Consensus 178 ------------------------------------~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illdE~~d~ 221 (372)
T 2ewv_A 178 ------------------------------------VFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDL 221 (372)
T ss_dssp ------------------------------------CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEESCCCSH
T ss_pred ------------------------------------hhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEECCCCCH
Confidence 12345556666 6667777777777543332 45
Q ss_pred HHHHHHHHHccchhh-----------------------------HhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhcc
Q psy845 599 TELWDALEKSHLKSK-----------------------------VVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 599 eeI~~Al~~a~l~ef-----------------------------I~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~ 647 (677)
++++++++.++.... ...+++++++.+ ++.++|+| ||+++||+++.+
T Consensus 222 e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~~~~G--~R~~i~e~l~~~ 299 (372)
T 2ewv_A 222 ETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYELLIPN 299 (372)
T ss_dssp HHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEECSSS--SEEEEEEECCCC
T ss_pred HHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEecCCC--CEEEEEEEeeCC
Confidence 556666666543211 123578899888 67888999 899999999999
Q ss_pred chh
Q psy845 648 TKK 650 (677)
Q Consensus 648 p~I 650 (677)
|++
T Consensus 300 ~~i 302 (372)
T 2ewv_A 300 TAI 302 (372)
T ss_dssp SHH
T ss_pred HHH
Confidence 998
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-17 Score=174.39 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=60.5
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
.-++.+|+++.|+.+ ..+|+++ |+|++||++||+||||||||||+++|+|+.+|+.|.|.++|.+.+
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ 110 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGR 110 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHH
Confidence 457889999999744 3699999 999999999999999999999999999999999999999987643
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-15 Score=144.97 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=28.5
Q ss_pred ceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 456 NVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 456 nISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
|+||++++||.++|+||||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999965
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-17 Score=185.39 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=51.1
Q ss_pred EeCCCCCccccceee-EEeCCcEEEEEcCCCCChHHHHHH--HhcCCCCCccEEEECCEec
Q psy845 445 RYRDNWPLVLANVSF-RINHGENIGIVGRTGAGKSSLLVA--LFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 445 sY~~~~~~VLknISl-~I~~GE~VAIVGpSGSGKSTLi~L--L~r~y~p~~G~I~IdG~dI 502 (677)
+|+.+ .++|+|+|+ .+++||.++|+||||||||||++. +.|+.+|++|+|+++|.+.
T Consensus 20 ~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 20 KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (525)
T ss_dssp EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 45544 469999999 999999999999999999999999 7899999999999999873
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-16 Score=155.18 Aligned_cols=127 Identities=16% Similarity=0.120 Sum_probs=87.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHH
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLV 540 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~ 540 (677)
+++|++++|+||||||||||+++|+|+++... |.++... |
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~------~~~v~~t-------------------------------t--- 40 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIF------GFSVSHT-------------------------------T--- 40 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTE------EECCCEE-------------------------------C---
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhc------eeeeeee-------------------------------c---
Confidence 36899999999999999999999999986221 1222111 0
Q ss_pred HHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcc
Q psy845 541 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSK 620 (677)
Q Consensus 541 ~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~G 620 (677)
-+|++|+ +||.++...+.+++|+.+ +|++++|++++++|+ ++ .++++++++++..+..-+ +-.|+|
T Consensus 41 -----r~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~~~n~-~g--~~~~~i~~~~~~~~~~~~-~~~~~g 106 (198)
T 1lvg_A 41 -----RNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEFSGNL-YG--TSKEAVRAVQAMNRICVL-DVDLQG 106 (198)
T ss_dssp -----SCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEETTEE-EE--EEHHHHHHHHHTTCEEEE-ECCHHH
T ss_pred -----cCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeeecCcc-CC--CCHHHHHHHHHcCCcEEE-ECCHHH
Confidence 1355666 577888777889999876 799999999999999 43 367889999886543322 224667
Q ss_pred cCCCCCCCCCChHHHHHHHHHH-HHhccchhh
Q psy845 621 LDSDVQGDQLSLGEKQLLCLAR-ALLRKTKKK 651 (677)
Q Consensus 621 ldT~v~G~~LSGGQRQRIaIAR-ALLr~p~IL 651 (677)
+++... . ++ .|| +++++|++.
T Consensus 107 ~~~~~~-~--------~~-~~~~~~l~~p~~~ 128 (198)
T 1lvg_A 107 VRSIKK-T--------DL-CPIYIFVQPPSLD 128 (198)
T ss_dssp HHHHTT-S--------SC-CCEEEEEECSCHH
T ss_pred HHHHHh-c--------CC-CcEEEEEeCCCHH
Confidence 766431 1 12 677 788888755
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-16 Score=167.55 Aligned_cols=129 Identities=13% Similarity=0.056 Sum_probs=88.5
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGA 533 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~ 533 (677)
++++||++++||.+++||||||||||+++.|+|++.|++|+|.++|.|+.....
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a-------------------------- 143 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAA-------------------------- 143 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHH--------------------------
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhH--------------------------
Confidence 456889999999999999999999999999999999999999999988755410
Q ss_pred CCchhHHHHHHhhhhccccccccccchhhhhHHHH--hhhccccccccc-cc-ccchhhccccCC-CCChHHHHHHHHHc
Q psy845 534 GKSSLLVALFRLVELSSGQIKIDDFDIASVELETL--RSRLSVIPQDPV-LF-NGTIRYNLDPFG-RCHDTELWDALEKS 608 (677)
Q Consensus 534 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L--R~~I~~V~Qd~~-LF-sgTIrENI~~~~-~~sdeeI~~Al~~a 608 (677)
...++.+ |.++++++|++. ++ ..|++||+.... ...+. ..++.+
T Consensus 144 ----------------------------~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~---~lldt~ 192 (302)
T 3b9q_A 144 ----------------------------SDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDV---VLCDTS 192 (302)
T ss_dssp ----------------------------HHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSE---EEECCC
T ss_pred ----------------------------HHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcc---hHHhcC
Confidence 0022333 457889999887 55 568889885321 00010 012222
Q ss_pred cchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch--hh
Q psy845 609 HLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK--KK 651 (677)
Q Consensus 609 ~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~--IL 651 (677)
|+.+.... ...+|| |||++||||+..+|+ ++
T Consensus 193 gl~~~~~~---------~~~eLS---kqr~~iaral~~~P~e~lL 225 (302)
T 3b9q_A 193 GRLHTNYS---------LMEELI---ACKKAVGKIVSGAPNEILL 225 (302)
T ss_dssp CCSSCCHH---------HHHHHH---HHHHHHHTTSTTCCSEEEE
T ss_pred CCCcchhH---------HHHHHH---HHHHHHHHhhccCCCeeEE
Confidence 22221111 123578 999999999999998 55
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-15 Score=158.13 Aligned_cols=32 Identities=41% Similarity=0.500 Sum_probs=28.9
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
.++++++++++| ..+|+||||||||||+++|+
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 356788999999 78899999999999999998
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-15 Score=147.48 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
+++|+||||||||||+++|+|++. |.++|.+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~ 35 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEE 35 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhh
Confidence 689999999999999999999984 5566655433
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-15 Score=142.29 Aligned_cols=154 Identities=15% Similarity=0.209 Sum_probs=83.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC-----CCCccEEEECC-------Eeccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV-----ELSSGQIKIDD-------FDIAS 504 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y-----~p~~G~I~IdG-------~dI~~ 504 (677)
++++|++|+|+. +++++ |++++|++++++|++|||||||++.|+|.. .|+.|.+...+ ..+.+
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 789999999962 58888 899999999999999999999999999998 78888765422 11111
Q ss_pred ccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc
Q psy845 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 505 l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg 584 (677)
. .|... .+......+.+|+.++.+.|+....++
T Consensus 79 t--------------------------------------------~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (210)
T 1pui_A 79 L--------------------------------------------PGYGY---AEVPEEMKRKWQRALGEYLEKRQSLQG 111 (210)
T ss_dssp C--------------------------------------------CCCC---------CCHHHHHHHHHHHHHHCTTEEE
T ss_pred C--------------------------------------------cCCcc---cccCHHHHHHHHHHHHHHHHhhhcccE
Confidence 1 01000 000111234567777777776544443
Q ss_pred -chhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHH-HHHHHHHhccchh
Q psy845 585 -TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL-LCLARALLRKTKK 650 (677)
Q Consensus 585 -TIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQR-IaIARALLr~p~I 650 (677)
.+..|+.......++++.+.++..++...+ ..+ +...+|+||||| +..||+++++|+.
T Consensus 112 ~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~------v~n--K~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 112 LVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV------LLT--KADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHHHTTCCEEE------EEE--CGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred EEEEEECCCCCchhHHHHHHHHHHcCCCeEE------EEe--cccCCCchhHHHHHHHHHHHHHhcCC
Confidence 445555422111223344444332221100 011 455789999999 8999999998864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-16 Score=165.35 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=89.2
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCC
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAG 534 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~ 534 (677)
+++||++++|+++++||||||||||+++.|+|++.|++|+|.++|.|+.....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a--------------------------- 200 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAA--------------------------- 200 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHH---------------------------
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccch---------------------------
Confidence 45788999999999999999999999999999999999999999988755310
Q ss_pred CchhHHHHHHhhhhccccccccccchhhhhHHHH--hhhccccccccc-cc-ccchhhccccCC-CCChHHHHHHHHHcc
Q psy845 535 KSSLLVALFRLVELSSGQIKIDDFDIASVELETL--RSRLSVIPQDPV-LF-NGTIRYNLDPFG-RCHDTELWDALEKSH 609 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L--R~~I~~V~Qd~~-LF-sgTIrENI~~~~-~~sdeeI~~Al~~a~ 609 (677)
...++.+ |.++++++|++. ++ ..|++||+.... +..+. ..++.+|
T Consensus 201 ---------------------------~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~---~lldt~G 250 (359)
T 2og2_A 201 ---------------------------SDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDV---VLCDTSG 250 (359)
T ss_dssp ---------------------------HHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSE---EEEECCC
T ss_pred ---------------------------hHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHH---HHHHhcC
Confidence 0022233 567889998886 54 568888885321 00010 0122222
Q ss_pred chhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch--hh
Q psy845 610 LKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK--KK 651 (677)
Q Consensus 610 l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~--IL 651 (677)
+.+.... ...+|| |||++||||+..+|+ ++
T Consensus 251 l~~~~~~---------~~~eLS---kqr~~iaral~~~P~e~lL 282 (359)
T 2og2_A 251 RLHTNYS---------LMEELI---ACKKAVGKIVSGAPNEILL 282 (359)
T ss_dssp CSSCCHH---------HHHHHH---HHHHHHHHHSTTCCSEEEE
T ss_pred CChhhhh---------HHHHHH---HHHHHHHHHHhcCCCceEE
Confidence 2221111 123578 999999999999998 55
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-16 Score=159.69 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=26.1
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|+|+||++++|+++||+|||||||||++++|++++
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46999999999999999999999999999999999976
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-14 Score=139.36 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=38.3
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
.+++|+.++|+|||||||||++++|++. |+.|.|.+||.++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWG 47 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhh
Confidence 4789999999999999999999999998 789999999877643
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-15 Score=145.30 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=55.1
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
-+|++++|++ ..+++++||++++||.++|+||+|||||||+++|+|+. |++|+|.++|.++.
T Consensus 10 ~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 10 DEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp SHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred CHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence 3466777854 36999999999999999999999999999999999999 99999999998764
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.2e-14 Score=147.35 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHH
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~ 542 (677)
+||+++|||||||||||+++.|+|++.|++|+|.++|.|+.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a----------------------------------- 145 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAG----------------------------------- 145 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTT-----------------------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhH-----------------------------------
Confidence 699999999999999999999999999999999999998754310
Q ss_pred HHhhhhccccccccccchhhhhHHHH--hhhcccccccccccc-cchhhccccCCCCChHHHHHHHHHccchhhHhhhhc
Q psy845 543 FRLVELSSGQIKIDDFDIASVELETL--RSRLSVIPQDPVLFN-GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRS 619 (677)
Q Consensus 543 ~~~~~~~~g~i~~~~~~~~~~~~~~L--R~~I~~V~Qd~~LFs-gTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~ 619 (677)
......+ |.++++|+|++.++. .|++||+... +..+.+..+...+.
T Consensus 146 -------------------~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~------------~~~~~d~~llDt~G 194 (304)
T 1rj9_A 146 -------------------GTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM------------KARGYDLLFVDTAG 194 (304)
T ss_dssp -------------------THHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH------------HHHTCSEEEECCCC
T ss_pred -------------------HHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH------------HhCCCCEEEecCCC
Confidence 0022333 457888999887664 4677777421 11111111111111
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHhccch
Q psy845 620 KLDSDVQGDQLSLGEKQLLCLARALLRKTK 649 (677)
Q Consensus 620 GldT~v~G~~LSGGQRQRIaIARALLr~p~ 649 (677)
..+. ....++..++||.+||||+..+|+
T Consensus 195 ~~~~--~~~~~~eLs~~r~~iaRal~~~P~ 222 (304)
T 1rj9_A 195 RLHT--KHNLMEELKKVKRAIAKADPEEPK 222 (304)
T ss_dssp CCTT--CHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred CCCc--hHHHHHHHHHHHHHHHHhhcCCCC
Confidence 1111 112346677999999999999998
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-15 Score=158.45 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=74.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH----HHhhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL----ETLRS 512 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~----~~~~~ 512 (677)
|+.+|++++|.+ ..+|+++|+++++|++++|+||+|||||||++.|+|++.|++|+|.+.|.|+..... ...++
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 556677888853 359999999999999999999999999999999999999999999999999865321 24578
Q ss_pred hcccccCCccccc
Q psy845 513 RLSVIPQDPVLFN 525 (677)
Q Consensus 513 ~i~~v~q~~~lf~ 525 (677)
++++++|++.+|.
T Consensus 108 ~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 108 RMARLAIDRNAFI 120 (337)
T ss_dssp GSTTGGGCTTEEE
T ss_pred hheeeccCccccc
Confidence 8999999988875
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.7e-16 Score=169.59 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=51.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
++++|+++.|+. ..+|+++ +. ++|+.++|+|||||||||++++|+|+++|++|+|.++|.++.
T Consensus 144 ~~l~~Lg~~~~~--~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 144 LDLHSLGMTAHN--HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp CCGGGSCCCHHH--HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred CCHHHcCCCHHH--HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 445566665532 2478887 54 899999999999999999999999999999999999987763
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-15 Score=145.26 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=28.7
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELS 491 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~ 491 (677)
.++|+++||+||||||||||+++|+|+++|+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.35 E-value=7.5e-14 Score=150.09 Aligned_cols=49 Identities=27% Similarity=0.266 Sum_probs=37.2
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-CCccEEEEC-CEe
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-LSSGQIKID-DFD 501 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-p~~G~I~Id-G~d 501 (677)
.-++++++. .+|++++++||||||||||+|+|+|... |..|+|.++ |.+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g 254 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG 254 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence 357788875 4899999999999999999999999999 999999987 654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.9e-15 Score=153.57 Aligned_cols=120 Identities=13% Similarity=0.013 Sum_probs=82.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHH
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVA 541 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~ 541 (677)
+++++|||+|+|||||||++++|.+++++. | .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g-----------~------------------------------------ 60 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y-----------G------------------------------------ 60 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H-----------G------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C-----------C------------------------------------
Confidence 357899999999999999999999988542 1 0
Q ss_pred HHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCC----CChHHHHHHHHHccchhhHhhh
Q psy845 542 LFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR----CHDTELWDALEKSHLKSKVVTM 617 (677)
Q Consensus 542 ~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~----~sdeeI~~Al~~a~l~efI~~L 617 (677)
+ ++.+.+|+||+++|++++++|+.+... .+.....++.+...+.+++.++
T Consensus 61 ----------------------~----~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l 114 (290)
T 1odf_A 61 ----------------------G----EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTI 114 (290)
T ss_dssp ----------------------G----GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHH
T ss_pred ----------------------C----CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHHHHHHh
Confidence 1 334556699999999999998743210 0000011223344567889999
Q ss_pred hcccCCC------C--CCCCCChHHHHHHHHH--HHHhccchhhcccccc
Q psy845 618 RSKLDSD------V--QGDQLSLGEKQLLCLA--RALLRKTKKKKKSGVN 657 (677)
Q Consensus 618 P~GldT~------v--~G~~LSGGQRQRIaIA--RALLr~p~IL~~~~~T 657 (677)
++|++|. + .+.++||||+||+++| |++ +|+++..+|.+
T Consensus 115 ~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~ 162 (290)
T 1odf_A 115 FNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWF 162 (290)
T ss_dssp TC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESS
T ss_pred hccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCcc
Confidence 9998763 2 5789999999999998 666 88888776665
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=150.46 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=73.2
Q ss_pred hhccccccccccchhh---hhHHHHhhhcccccccccccccchhhccccCCCCChHHHH-----HHHHHccchhhHhhhh
Q psy845 547 ELSSGQIKIDDFDIAS---VELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELW-----DALEKSHLKSKVVTMR 618 (677)
Q Consensus 547 ~~~~g~i~~~~~~~~~---~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~-----~Al~~a~l~efI~~LP 618 (677)
.+++|+++++|.++.+ ++.+++...+.=++|++.... + +...+.. .+.++. ++.+.. +.+..+
T Consensus 296 ~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--~~~~i~~~i~~ei~~rl---~~L~~v- 366 (842)
T 2vf7_A 296 RQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--EQAIALQRMAADLVKRL---DVLLHL- 366 (842)
T ss_dssp CTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS--SHHHHHHHHHHHHHHHH---HHHHHT-
T ss_pred CHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch--hhHHHHHHHHHHHHHHH---HHHHhC-
Confidence 3578899999999999 466666666666666555332 1 1221111 111111 111111 123333
Q ss_pred cccCCC-C--CCCCCChHHHHHHHHHHHHhccch--hh------------------------cccccce------ecccc
Q psy845 619 SKLDSD-V--QGDQLSLGEKQLLCLARALLRKTK--KK------------------------KKSGVNI------TRPVT 663 (677)
Q Consensus 619 ~GldT~-v--~G~~LSGGQRQRIaIARALLr~p~--IL------------------------~~~~~TI------LsTI~ 663 (677)
|++.. . ...+||||||||++|||||.++|+ ++ ...|.|| +..++
T Consensus 367 -GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~ 445 (842)
T 2vf7_A 367 -GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR 445 (842)
T ss_dssp -TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT
T ss_pred -CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 33321 2 467999999999999999999984 44 1235662 34566
Q ss_pred cccEEEEE------eCCeeC
Q psy845 664 SCDKVLVM------DNGQAL 677 (677)
Q Consensus 664 ~aDrIlVL------d~GrIV 677 (677)
.||+|++| ++|+++
T Consensus 446 ~aD~ii~lgpgaG~~~G~iv 465 (842)
T 2vf7_A 446 RADWLVDVGPEAGEKGGEIL 465 (842)
T ss_dssp TCSEEEEECSSSGGGCCSEE
T ss_pred hCCEEEEeCCCcccCCCEEE
Confidence 79999999 688764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-14 Score=147.25 Aligned_cols=132 Identities=19% Similarity=0.180 Sum_probs=86.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC--------CCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV--------ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGK 535 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y--------~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~ 535 (677)
=+.++|+|++||||||++|.|+|.+ .|+.|+|.+||.++++.+ +.+.+ -.|||
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~--------------~~~~e---l~~gC-- 64 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRA--------------TQIKT---LTNGC-- 64 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTS--------------CEEEE---ETTSC--
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCC--------------CCEEE---ECCCc--
Confidence 3689999999999999999999998 789999999999886541 00000 01222
Q ss_pred chhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccc---cccccc-cccchhhccccCCCCChHHHHHHH------
Q psy845 536 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI---PQDPVL-FNGTIRYNLDPFGRCHDTELWDAL------ 605 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V---~Qd~~L-FsgTIrENI~~~~~~sdeeI~~Al------ 605 (677)
|-.+ ...++++.++++ +|++.+ |+.++.||...+. .+.+.+.+
T Consensus 65 -----------------icc~-------~~~~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~---p~~~~~~~~~~~~~ 117 (318)
T 1nij_A 65 -----------------ICCS-------RSNELEDALLDLLDNLDKGNIQFDRLVIECTGMAD---PGPIIQTFFSHEVL 117 (318)
T ss_dssp -----------------EEEC-------TTSCHHHHHHHHHHHHHHTSCCCSEEEEEEETTCC---HHHHHHHHHHSHHH
T ss_pred -----------------eEEc-------ccHHHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCC---HHHHHHHHhcCccc
Confidence 1110 123567788887 688764 7899999997532 12221111
Q ss_pred -HHc---------cchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 606 -EKS---------HLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 606 -~~a---------~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+.. ++.++...+ .++|+|||||...+|+++.+++.+
T Consensus 118 ~~~~~l~~~l~~vd~~~~~~~~----------~~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 118 CQRYLLDGVIALVDAVHADEQM----------NQFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp HHHEEEEEEEEEEETTTHHHHH----------HHCHHHHHHHHTCSEEEEECTTTC
T ss_pred cCeEEECCEEEEEEHHHHHHHH----------hhchHHHHHHHhCCEEEEECcccC
Confidence 111 121222211 268999999999999999887755
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-13 Score=146.14 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=81.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcE--EEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGEN--IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~--VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
.++.++ +++|++. + |+|+|+++++|+. +|||||||||||||+|+|+|+. ++|.++...
T Consensus 16 ~l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~-------- 75 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHT-------- 75 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------C--------
T ss_pred eEEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCC--------
Confidence 455666 7888653 4 9999999999999 9999999999999999999983 344444322
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
+....++.+++++|++.++ +.|+.||+.+
T Consensus 76 --------------------------------------------------~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 76 --------------------------------------------------QPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp --------------------------------------------------CSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred --------------------------------------------------CccceEeeEEEEeecCccccccchhhhhhh
Confidence 1112355788999988877 6799999987
Q ss_pred CCCCChHHHHHH----HHHccchhhHhh-------hhcccCCC----C-----CCCCCChHHHHHHHHHHHHhccchhh
Q psy845 593 FGRCHDTELWDA----LEKSHLKSKVVT-------MRSKLDSD----V-----QGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 593 ~~~~sdeeI~~A----l~~a~l~efI~~-------LP~GldT~----v-----~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+...+.++-++. ++. ...+++.+ ++..-|++ + .+..|+-.+ +.++|+|-++++++
T Consensus 106 g~~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI 180 (427)
T 2qag_B 106 GDQINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNII 180 (427)
T ss_dssp CC-CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEE
T ss_pred hhccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEE
Confidence 654443221111 111 11122221 12223333 1 245677665 78999998777655
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=134.70 Aligned_cols=114 Identities=16% Similarity=0.067 Sum_probs=74.2
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE---CCEecccccHHHhhhhcccccCCccccccccccCCCCC
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGK 535 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I---dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~ 535 (677)
|++.+|+.++++||||||||||+|+|+|+..|++|+|.+ +|.+++........+++|+++|+|.+..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~---------- 233 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN---------- 233 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT----------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc----------
Confidence 456789999999999999999999999999999999999 9998876431111247899999987643
Q ss_pred chhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccc----cccc-ccchhhccccCC----CCChHHHHHHHH
Q psy845 536 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD----PVLF-NGTIRYNLDPFG----RCHDTELWDALE 606 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd----~~LF-sgTIrENI~~~~----~~sdeeI~~Al~ 606 (677)
++++.|+ ..+| +-|+ ||+.+.. ...+..+.++++
T Consensus 234 ------------------------------------~~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~ 276 (301)
T 1u0l_A 234 ------------------------------------LEINDIEPEELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVE 276 (301)
T ss_dssp ------------------------------------CCCCSSCHHHHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHH
T ss_pred ------------------------------------cCCCcCCHHHHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHH
Confidence 2234444 3344 4577 8887531 223467899999
Q ss_pred Hccch-hhHhhhhc
Q psy845 607 KSHLK-SKVVTMRS 619 (677)
Q Consensus 607 ~a~l~-efI~~LP~ 619 (677)
..++. +...+.|.
T Consensus 277 ~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 277 NGEIAESRYENYVK 290 (301)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 99994 66666654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-08 Score=113.18 Aligned_cols=35 Identities=37% Similarity=0.662 Sum_probs=32.8
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 35689999999999999999999999999999987
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-13 Score=149.46 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=72.4
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+.|+++|++++|++. .+++|+||+| +||||||||||||++.|+|...|..| .+|.++...
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~--------- 69 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK--------- 69 (418)
T ss_dssp -----CCCCCCTTTT--TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-------------
T ss_pred CcEEEEecceeECCE--EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc---------
Confidence 468999999999753 6999999987 99999999999999999999887666 233322110
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
...-++.+++++|++.++ +.|+.||+.++
T Consensus 70 --------------------------------------------------~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~ 99 (418)
T 2qag_C 70 --------------------------------------------------KTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 99 (418)
T ss_dssp ---------------------------------------------------CCEEEEEECC------CEEEEEEECC---
T ss_pred --------------------------------------------------cceeeeeEEEEEecCCcccceeeeechhhh
Confidence 001134678888887776 67999998654
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~ 649 (677)
...+.++.++.+ .+++.+ .++.+++||++||||++++|+
T Consensus 100 ~~~~~~~~~~~i-----~~~i~~------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 100 DAVDNSNCWQPV-----IDYIDS------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp --------CHHH-----HHHHHH------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred hhccchhhHHHH-----HHHHHH------------HHHHHHHHHHHHHHHhccCCC
Confidence 332222222211 122221 344567789999999999998
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-12 Score=124.18 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=29.0
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
-+++||.++|+||||||||||+++|+|.+.|
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 6999999999999999999999999997666
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-13 Score=135.64 Aligned_cols=40 Identities=28% Similarity=0.520 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
||+++|+|||||||||++++|+|+++ ++| |.+||.+..++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~ 40 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV 40 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh
Confidence 79999999999999999999999998 999 99998887554
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.9e-12 Score=135.35 Aligned_cols=33 Identities=39% Similarity=0.571 Sum_probs=31.3
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.++++++++++| .++|+|||||||||+++++.+
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 578999999999 999999999999999999986
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-13 Score=143.19 Aligned_cols=55 Identities=25% Similarity=0.307 Sum_probs=22.4
Q ss_pred EeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC-CCCCccEEEECCEecc
Q psy845 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL-VELSSGQIKIDDFDIA 503 (677)
Q Consensus 440 knVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~-y~p~~G~I~IdG~dI~ 503 (677)
+|++++|++. .+++|++|+| ++|||||||||||++.|+|. ..|++| +.++|.++.
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~ 57 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIE 57 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC------------------
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccC
Confidence 4788889653 6999999987 99999999999999999998 888999 888887653
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-12 Score=136.75 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=44.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE---CCEecccccHHHhh-hhcccccCCcccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLR-SRLSVIPQDPVLF 524 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I---dG~dI~~l~~~~~~-~~i~~v~q~~~lf 524 (677)
++.+|++++++||||||||||+|+|+ ..+|++|+|.+ +|.+++... +..+ +++|+++|+|.+.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCS
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcC
Confidence 45679999999999999999999999 99999999999 998886542 1222 3577777776553
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.21 E-value=8.3e-13 Score=129.51 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=26.4
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.++++| .++++||.+||+||||||||||+++|+|+++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468888 7999999999999999999999999999985
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.3e-13 Score=130.74 Aligned_cols=30 Identities=37% Similarity=0.395 Sum_probs=26.4
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
.++|+++||+|||||||||++++|+|++.|
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999999998754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.1e-09 Score=117.77 Aligned_cols=35 Identities=34% Similarity=0.744 Sum_probs=33.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~ 406 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406 (587)
T ss_dssp EEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB
T ss_pred EEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE
Confidence 46789999999999999999999999999999987
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-11 Score=127.92 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=43.6
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDD 499 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG 499 (677)
++|+++++.+++||.++|+||+|||||||++.+++...|++| +|.+.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 489999999999999999999999999999999999999878 675543
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-08 Score=115.44 Aligned_cols=35 Identities=34% Similarity=0.685 Sum_probs=32.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence 36789999999999999999999999999999987
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-09 Score=120.64 Aligned_cols=36 Identities=42% Similarity=0.667 Sum_probs=33.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|+|+++|++|+|++||.|+
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~ 405 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 405 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 367899999999999999999999999999999873
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.5e-13 Score=138.23 Aligned_cols=124 Identities=14% Similarity=0.074 Sum_probs=85.9
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
+.+++++++++++| ++|+||+|||||||++++++...+ |.|.++|.++.+.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~------------------------- 83 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNM------------------------- 83 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSS-------------------------
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhh-------------------------
Confidence 35899999999999 999999999999999999999876 7899998777554
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-ccc-ccchhhccccCCCC-ChHHHHHHHHH
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLF-NGTIRYNLDPFGRC-HDTELWDALEK 607 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~LF-sgTIrENI~~~~~~-sdeeI~~Al~~ 607 (677)
...+.++++++++|++ ..+ .-++.||++..... .+++.
T Consensus 84 ---------------------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~------ 124 (274)
T 2x8a_A 84 ---------------------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET------ 124 (274)
T ss_dssp ---------------------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------
T ss_pred ---------------------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc------
Confidence 2223455667777764 232 34677888643211 11110
Q ss_pred ccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 608 SHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 608 a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
....+...++ -.+|||||+||..+|+|+..+|+++
T Consensus 125 ~~~~~~~~~~---------l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 125 GASVRVVNQL---------LTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp --CTTHHHHH---------HHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hHHHHHHHHH---------HHhhhcccccCCEEEEeecCChhhC
Confidence 0011222222 2368999999999999999999876
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-12 Score=136.12 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=70.4
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEE-------------------eCCcEEEEEcCCCCChHHHHHHHhcCCC--CCc
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRI-------------------NHGENIGIVGRTGAGKSSLLVALFRLVE--LSS 492 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I-------------------~~GE~VAIVGpSGSGKSTLi~LL~r~y~--p~~ 492 (677)
++.|+++||++.|. ++++++|+++ ++|+++||+|||||||||++++|+|++. |++
T Consensus 35 ~~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp CTTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred ccccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 45689999999993 5999999998 8999999999999999999999999998 999
Q ss_pred cEEEE---CCEecccccHHHhhhhcccccCCccccc
Q psy845 493 GQIKI---DDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 493 G~I~I---dG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
|+|.+ ||.+.. ...++++|++ |+..++.
T Consensus 111 G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~ 141 (308)
T 1sq5_A 111 RRVELITTDGFLHP----NQVLKERGLM-KKKGFPE 141 (308)
T ss_dssp CCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGG
T ss_pred CeEEEEecCCccCc----HHHHHhCCEe-ecCCCCC
Confidence 99999 987752 2345678888 7655543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-11 Score=136.09 Aligned_cols=53 Identities=17% Similarity=0.020 Sum_probs=40.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~ 494 (677)
++.+++++.|++-+ .+|++ .+++|+.++|+||+|||||||++.+++...|+ |+
T Consensus 258 ~~~~~l~~g~~~ld-~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~ 310 (525)
T 1tf7_A 258 SSNVRVSSGVVRLD-EMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE 310 (525)
T ss_dssp CCCCEECCSCHHHH-HHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC
T ss_pred cccceeecChHHHH-HHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC
Confidence 45556666554211 24443 89999999999999999999999999998775 53
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-11 Score=125.24 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=74.1
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHh---cCCCCCccEEE--------ECCEecccccHHHhhhhcccccCCc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALF---RLVELSSGQIK--------IDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~---r~y~p~~G~I~--------IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
++++.+ ++|+++||+|||||||||++++|+ |++.|++|++. .+|.++.+-
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~---------------- 79 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTE---------------- 79 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSS----------------
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccH----------------
Confidence 445543 789999999999999999999999 99999999888 777776332
Q ss_pred cccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc------cccccccchhhccccCCC
Q psy845 522 VLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ------DPVLFNGTIRYNLDPFGR 595 (677)
Q Consensus 522 ~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q------d~~LFsgTIrENI~~~~~ 595 (677)
....++++++++++| ..++++.++.+|++
T Consensus 80 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~i~---- 114 (252)
T 4e22_A 80 -----------------------------------------EALVPLAAHLDVRFVSQNGQLQVILEGEDVSNEIR---- 114 (252)
T ss_dssp -----------------------------------------TTHHHHHHTCCEEEEEETTEEEEEETTEECTTGGG----
T ss_pred -----------------------------------------HHHHHHHHcCCEEEecCCCCceEEECCeehhHHHH----
Confidence 145567777777774 45677788888875
Q ss_pred CChHHHHHHHHHccchhhHhhhhcc
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSK 620 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~G 620 (677)
.+++.+++..+..++.+.+....
T Consensus 115 --~~~v~~~~s~~~~~~~vr~~l~~ 137 (252)
T 4e22_A 115 --TETVGNTASQAAAFPRVREALLR 137 (252)
T ss_dssp --SHHHHHHHHHHTTSHHHHHHHHH
T ss_pred --HHHHHHHHHHhcccHHHHHHHHH
Confidence 45676777777777666555443
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-12 Score=144.18 Aligned_cols=51 Identities=27% Similarity=0.362 Sum_probs=48.1
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
+.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 457899999999999999999999999999999999999999999998865
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-12 Score=146.14 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=40.1
Q ss_pred cEEEEeeeEEeCCCCCccccce----------eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECCEeccc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANV----------SFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIAS 504 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknI----------Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG~dI~~ 504 (677)
.++++|+++.|++...++|+.+ +++++. +|||||||||||||+++|+|++.| ++|+|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5789999999975433455555 366654 999999999999999999999989 89999999999743
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-08 Score=112.50 Aligned_cols=36 Identities=39% Similarity=0.733 Sum_probs=33.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|+||||||||+++|+|+++|++|+|.+||.|+
T Consensus 384 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i 419 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEh
Confidence 467899999999999999999999999999999873
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.6e-12 Score=134.74 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=49.3
Q ss_pred EeeeEEeCCCCCccccceee-------EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-ccEEEE
Q psy845 440 KNVSLRYRDNWPLVLANVSF-------RINHGENIGIVGRTGAGKSSLLVALFRLVELS-SGQIKI 497 (677)
Q Consensus 440 knVsFsY~~~~~~VLknISl-------~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-~G~I~I 497 (677)
.+++++|.+...+.|+++++ ..++|+.++|+|||||||||++++++|+++|+ +|.|..
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 57888886665678888887 78899999999999999999999999999997 566644
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-12 Score=126.04 Aligned_cols=105 Identities=25% Similarity=0.239 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC---CCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhH
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV---ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLL 539 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y---~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~ 539 (677)
.+.++||+||+||||||+.++|.+.+ .++.|++..+ ...
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~---------------~~~----------------------- 45 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV---------------LAL----------------------- 45 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH---------------HHH-----------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeeh---------------hhH-----------------------
Confidence 36789999999999999999999876 4555544330 000
Q ss_pred HHHHHhhhhccccccccccchh-hhhHHHHhhhcccccccc------cccccchhhccccCCCCChHHHHHHHHHccchh
Q psy845 540 VALFRLVELSSGQIKIDDFDIA-SVELETLRSRLSVIPQDP------VLFNGTIRYNLDPFGRCHDTELWDALEKSHLKS 612 (677)
Q Consensus 540 ~~~~~~~~~~~g~i~~~~~~~~-~~~~~~LR~~I~~V~Qd~------~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~e 612 (677)
...+ +|.++. .....++++++++++|++ .++..++.+|+ .++++.+++..+..++
T Consensus 46 ------~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~------~~~~~~~~~~~~~~~~ 107 (227)
T 1cke_A 46 ------AALH------HHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEI------RTQEVANAASQVAAFP 107 (227)
T ss_dssp ------HHHH------HTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTEECHHHH------TSHHHHHHHHHHTTCH
T ss_pred ------HHHH------cCCCccCHHHHHHHHHhCceeeeccCCCceEEECCeeCchhh------CCHHHHHHHHHhcCCH
Confidence 0000 111111 126778899999999886 44555666665 3678899999999999
Q ss_pred hHhhhhcccCC
Q psy845 613 KVVTMRSKLDS 623 (677)
Q Consensus 613 fI~~LP~GldT 623 (677)
.+.+...+.++
T Consensus 108 ~v~~~~~~~~~ 118 (227)
T 1cke_A 108 RVREALLRRQR 118 (227)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887665543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-11 Score=134.23 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=47.0
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
-+++||++++|++++|||+|||||||+++.|+|++.|++|+|.++|.|...
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 468999999999999999999999999999999999999999998877643
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-11 Score=114.63 Aligned_cols=64 Identities=25% Similarity=0.235 Sum_probs=45.7
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
|+++++|+.++|+|||||||||++++|+|++ | .+.++|.++...+....++.+++++|++.+|.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHH
Confidence 5778899999999999999999999999997 3 58888877766533333455666666555444
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-10 Score=128.16 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=55.3
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 506 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~ 506 (677)
++++++... ..+|+|+||++++ |++||+||||||||||+++|+|+++|++|+|.++|.++.+.+
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 345555432 1489999999999 999999999999999999999999999999999999987543
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8.7e-11 Score=117.70 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=48.0
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCC--CccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
..++|+.++|+||||||||||+++|+|.++| ..|+|.+++.+.+.- .++.++|+||++.+|+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~----e~~gi~y~fq~~~~f~ 75 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG----EVHGEHYFFVNHDEFK 75 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT----CCBTTTBEECCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc----cccCceEEECCHHHHH
Confidence 4688999999999999999999999999986 789999888765431 2456677777666655
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-10 Score=123.51 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=41.5
Q ss_pred cccce-eeEEeCCcEEEEEcCCCCChHHHHHHHhcCC--CCCc----cE-EEECCEe
Q psy845 453 VLANV-SFRINHGENIGIVGRTGAGKSSLLVALFRLV--ELSS----GQ-IKIDDFD 501 (677)
Q Consensus 453 VLknI-Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y--~p~~----G~-I~IdG~d 501 (677)
.|+++ +..+++|+.++|+||+|||||||++.+++.+ +|++ |+ |++|+.+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45555 6799999999999999999999999999998 6666 56 7877754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-10 Score=128.96 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=58.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC----------------------C-C---
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL----------------------V-E--- 489 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~----------------------y-~--- 489 (677)
.++++|+. .++++++++.+| ..+|+|+||||||||+.+|..+ + +
T Consensus 42 ~L~i~nf~---------~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~ 111 (517)
T 4ad8_A 42 RLEIRNLA---------TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDE 111 (517)
T ss_dssp EEEEESBT---------TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC-----
T ss_pred eeeccccc---------ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCC
Confidence 46777642 567889999999 9999999999999999999544 4 2
Q ss_pred ------------CCccEEEECCEecccccHHHh-hhhcccccCCccccc
Q psy845 490 ------------LSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFN 525 (677)
Q Consensus 490 ------------p~~G~I~IdG~dI~~l~~~~~-~~~i~~v~q~~~lf~ 525 (677)
..++++++||.+++.-...++ ..-+.+++|+..+..
T Consensus 112 ~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l 160 (517)
T 4ad8_A 112 SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL 160 (517)
T ss_dssp ---CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTTTEEEESGGGGGTT
T ss_pred CCeEEEEEEEecCCCcEEEECCEECCHHHHHHHhhhheEEeCCchHHhc
Confidence 235689999998865434444 344567787755433
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-11 Score=125.94 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=38.3
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE---CCEecccccHHHhhhhcccccCCccccc
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I---dG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
+++.+|++++|+||||||||||+|.|+|...|..|+|.+ +|.+.+... +..+..+|+++|+|.+..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~ 236 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSS 236 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSS
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccc
Confidence 567799999999999999999999999999999999999 888775431 222223778888876643
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.2e-10 Score=135.27 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=41.7
Q ss_pred ccEEEEe-----eeEEeCCCCCccccceeeEEeC-------CcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 435 GTIKFKN-----VSLRYRDNWPLVLANVSFRINH-------GENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 435 g~I~fkn-----VsFsY~~~~~~VLknISl~I~~-------GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+.|+++| |+++|+++ ..|++|+||++++ |+.++|+|||||||||++|.+ |+..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4699999 99999543 4699999999987 999999999999999999999 8763
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-09 Score=116.46 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=38.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~ 492 (677)
.++++|+ .+|++. . ++++.+|+.++|+|||||||||+++++.++..|.+
T Consensus 6 ~l~~~~~-~~~~~~-----~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 6 GLELSNF-KSYRGV-----T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEEESC-SSCCSE-----E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEEeCE-EEECCc-----e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 5888998 678531 1 35567899999999999999999999999887765
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-10 Score=110.23 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=23.4
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh-cCCCC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALF-RLVEL 490 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~-r~y~p 490 (677)
...+++||++++|+.+||+|||||||||++++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99854
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.1e-10 Score=118.28 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=42.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+.++|+.+++||||||||||+++.|+|++.|++|+|.++|.|+...
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~ 170 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRA 170 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccccc
Confidence 3478999999999999999999999999999999999999998654
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.8e-10 Score=128.54 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=45.4
Q ss_pred CccEEEEeeeEEeCC---CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-CCccE
Q psy845 434 QGTIKFKNVSLRYRD---NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-LSSGQ 494 (677)
Q Consensus 434 ~g~I~fknVsFsY~~---~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-p~~G~ 494 (677)
.+.+++++. ++|- +++.|++|+||+ |+.++|+|||||||||++|+++|+.. ++.|+
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~ 607 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGS 607 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence 456888887 4543 335799999999 99999999999999999999999763 45554
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=7.9e-10 Score=106.11 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=64.1
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHH
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLV 540 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~ 540 (677)
.+|+.++|+||||||||||+++|++.+++ ..|.|.....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr---------------------------------------- 42 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTR---------------------------------------- 42 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECS----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCC----------------------------------------
Confidence 36999999999999999999999999864 4565543221
Q ss_pred HHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHH
Q psy845 541 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEK 607 (677)
Q Consensus 541 ~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~ 607 (677)
+|.+|+ .||.++.-.+.+++++. +.|+.+++.+++.+|. ++ .+.+++.++++.
T Consensus 43 ------~~~~ge--~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n~-yg--~~~~~i~~~l~~ 95 (180)
T 1kgd_A 43 ------PPKKDE--ENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDAM-YG--TKLETIRKIHEQ 95 (180)
T ss_dssp ------CC---C--CBTTTBEECCHHHHHHH---HHTTCEEEEEEETTEE-EE--EEHHHHHHHHHT
T ss_pred ------CCCccc--cCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCcc-cc--ccHHHHHHHHHC
Confidence 233343 46666666677777764 6799999999999994 32 234556655553
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-11 Score=125.61 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=51.1
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
+++++...|.+ +.+++++++++++| ++|+||+|||||||++++++... .|.|.++|.++.+
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVE 111 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHH
Confidence 45677777754 35899999999999 99999999999999999999875 7888888766544
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.82 E-value=7.9e-09 Score=101.74 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=36.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc--CCCC-----CccEEEECCEe
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFR--LVEL-----SSGQIKIDDFD 501 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r--~y~p-----~~G~I~IdG~d 501 (677)
-+++|+.++|+||+||||||+++.+++ ..+| .+|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 5655 56788887755
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-09 Score=108.18 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=66.3
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKS 536 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~ 536 (677)
|+...+|+.++|+||||||||||++.|++.++. ..+.+... .
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~T-----T-------------------------------- 55 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYT-----T-------------------------------- 55 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE-----C--------------------------------
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeeccc-----c--------------------------------
Confidence 344558999999999999999999999998752 11111110 0
Q ss_pred hhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHH
Q psy845 537 SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEK 607 (677)
Q Consensus 537 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~ 607 (677)
-+|.+|+ +||.++.-.+.++.++.+ .|+.+++.+++.+|. ++. +.+++.+++++
T Consensus 56 ---------R~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~~~~n~-YGt--~~~~v~~~l~~ 109 (197)
T 3ney_A 56 ---------RPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGSYQGNM-FGT--KFETVHQIHKQ 109 (197)
T ss_dssp ---------SCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEEETTEE-EEE--EHHHHHHHHHT
T ss_pred ---------cCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhhhhcee-ccc--chhhHHHHHhc
Confidence 1345565 677777777888888875 699999999999995 442 34555555554
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-12 Score=134.82 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=46.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCC-------cEEEEEcCCCCChHHHHHHHhcCC----CCCccEEEEC
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHG-------ENIGIVGRTGAGKSSLLVALFRLV----ELSSGQIKID 498 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~G-------E~VAIVGpSGSGKSTLi~LL~r~y----~p~~G~I~Id 498 (677)
++.++++..|++ +.+++++++.+++| +.++++||+|+|||||++++++.. .|.+|++..+
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 444566666754 35999999999887 899999999999999999999987 4444544433
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-09 Score=119.86 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=33.7
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
--+++|+++++|+.++|||++|||||||++.|++..
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 357999999999999999999999999999999974
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-11 Score=122.65 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=51.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
.+++++...|.+ +.+++++++++++| ++|+||+|+|||||++++++... .|.+.++|.++.+
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVE 87 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHH
Confidence 456778777754 35899999999999 99999999999999999999875 7888888766543
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-10 Score=116.60 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=52.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH--------
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-------- 507 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~-------- 507 (677)
.++++|++..|.. ++++++ +.++|+||||||||||+++|+|+..|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5889998766531 455566 8999999999999999999999999999999999999844322
Q ss_pred HHhhhhcccccCC
Q psy845 508 ETLRSRLSVIPQD 520 (677)
Q Consensus 508 ~~~~~~i~~v~q~ 520 (677)
...++++++++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2346789999975
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.6e-09 Score=101.84 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=30.0
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
+++++|+.++|+|||||||||++++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.4e-09 Score=99.86 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=44.7
Q ss_pred ccccceee-EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 452 LVLANVSF-RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 452 ~VLknISl-~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
+.|+++.. .+++|+.++|+||+|||||||++.+++...+++|++.+.+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 47888887 8999999999999999999999999998888888888765443
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-08 Score=102.89 Aligned_cols=32 Identities=38% Similarity=0.434 Sum_probs=23.9
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHH-hcCCCC
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVAL-FRLVEL 490 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL-~r~y~p 490 (677)
.++..+| ..+|+|||||||||++.++ .++|.+
T Consensus 18 ~i~f~~~-~~~i~G~NGsGKS~lleAi~~~l~~~ 50 (339)
T 3qkt_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAILVGLYWP 50 (339)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred EEcCCCC-eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4445555 8899999999999999976 344433
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-08 Score=120.48 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=41.1
Q ss_pred ccEEEEeeeEEeCC---CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHH
Q psy845 435 GTIKFKNVSLRYRD---NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484 (677)
Q Consensus 435 g~I~fknVsFsY~~---~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL 484 (677)
+.+++++..--+-+ +.+.|++|+||++++|+.++|+|||||||||++|.+
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 45888876543322 234799999999999999999999999999999999
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.6e-09 Score=107.43 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=35.7
Q ss_pred ccEEEEee-eEEeCCCCCccccceeeEEeC---CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 435 GTIKFKNV-SLRYRDNWPLVLANVSFRINH---GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 435 g~I~fknV-sFsY~~~~~~VLknISl~I~~---GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
..++++|+ +++|+++ .++|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35899999 9999333 4699999999999 9999999999999999999999854
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.7e-08 Score=118.37 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=40.7
Q ss_pred CCCCCChHHHHHHHHHHHHhccch--hh------------------------cccccce------ecccccccEEEEE--
Q psy845 626 QGDQLSLGEKQLLCLARALLRKTK--KK------------------------KKSGVNI------TRPVTSCDKVLVM-- 671 (677)
Q Consensus 626 ~G~~LSGGQRQRIaIARALLr~p~--IL------------------------~~~~~TI------LsTI~~aDrIlVL-- 671 (677)
...+||||||||++|||||.++|+ ++ ...|.|| +..++.||+|++|
T Consensus 461 ~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgp 540 (916)
T 3pih_A 461 SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGP 540 (916)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEES
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcC
Confidence 467999999999999999999876 44 1235673 3345679999999
Q ss_pred ----eCCeeC
Q psy845 672 ----DNGQAL 677 (677)
Q Consensus 672 ----d~GrIV 677 (677)
++|+++
T Consensus 541 gag~~~G~iv 550 (916)
T 3pih_A 541 GGGTNGGRVV 550 (916)
T ss_dssp SSGGGCSEEE
T ss_pred CcccCCCEEE
Confidence 888874
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.5e-09 Score=102.98 Aligned_cols=73 Identities=23% Similarity=0.288 Sum_probs=52.7
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE--EECCEecccccHHHhhhhccccc
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI--KIDDFDIASVELETLRSRLSVIP 518 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I--~IdG~dI~~l~~~~~~~~i~~v~ 518 (677)
|++.++.+ ..+.+..++..++|+.++|+|||||||||++++|++.+. ..|.+ .+||.+++.- +++.+++.+
T Consensus 4 ~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~~----~~~~~~~~~ 76 (200)
T 3uie_A 4 NIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRHG----LNRDLSFKA 76 (200)
T ss_dssp ------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTTT----TTTTCCSSH
T ss_pred CCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhhH----hhcccCcCh
Confidence 44444332 346788888899999999999999999999999999987 78988 9998877542 334455554
Q ss_pred CC
Q psy845 519 QD 520 (677)
Q Consensus 519 q~ 520 (677)
++
T Consensus 77 ~~ 78 (200)
T 3uie_A 77 ED 78 (200)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-08 Score=104.58 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=41.2
Q ss_pred eeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 457 ISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
++++.++|+.++++||+||||||+++.|++.+.+++|+|.+.+.|..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 35556789999999999999999999999999999899998877653
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-07 Score=101.18 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=34.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHH--HhcCCCCCcc-----EEEECCEe
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVA--LFRLVELSSG-----QIKIDDFD 501 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~L--L~r~y~p~~G-----~I~IdG~d 501 (677)
-+++|+.++|+||||||||||++. +.+..+++.| .+++|+.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 589999999999999999999994 4566666444 77777755
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=98.45 E-value=6.6e-08 Score=98.82 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=28.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I 495 (677)
+++|+.++|+||+|||||||++.+++... .|++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~ 59 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD 59 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC
Confidence 78999999999999999999999998553 4554
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-08 Score=95.08 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=47.7
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
.++.++|+.++|+||+||||||++++|++.+ |.+.+||.++..- ....+...|+++|++..+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~ 85 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWP 85 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCccccc
Confidence 3566889999999999999999999999977 9999999887542 2233456899999876554
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.1e-08 Score=93.88 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=54.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHH
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLV 540 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~ 540 (677)
++|+.++|+|||||||||+++.|++.++| ..+.+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr---------------------------------------- 45 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTR---------------------------------------- 45 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESS----------------------------------------
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccc----------------------------------------
Confidence 58999999999999999999999999986 3333322111
Q ss_pred HHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 541 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 541 ~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
+|..|+ .+|.++.-.+.+..++.+ .|+.+++.+++.+|.
T Consensus 46 ------~~~~~e--~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~~~ 84 (208)
T 3tau_A 46 ------LPREGE--QDGVDYYFRSREVFEQAI---KDGKMLEYAEYVGNY 84 (208)
T ss_dssp ------CCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETTEE
T ss_pred ------cCcCcc--cCCceeEEecHHHHHHHH---hcCcEEEEEEEcccc
Confidence 122332 455555555677776654 688888888877774
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-08 Score=93.90 Aligned_cols=49 Identities=20% Similarity=0.055 Sum_probs=38.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
|+.++|+|||||||||+++.|++ |.+|++.+||.++.+. ...++++|..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~ 50 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWE 50 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCcc
Confidence 78999999999999999999997 7789999998665432 2345565543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=8.2e-08 Score=110.69 Aligned_cols=99 Identities=21% Similarity=0.129 Sum_probs=69.6
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC--CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCC
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGK 535 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~ 535 (677)
|+++++|++++|+|++|+|||||++.|++...+ ..|+| .+|.++.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~------------------------------ 51 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDY------------------------------ 51 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCC------------------------------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccC------------------------------
Confidence 457789999999999999999999999987655 67777 667666665
Q ss_pred chhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc--cCCCCChHHHHHHHHHccchhh
Q psy845 536 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD--PFGRCHDTELWDALEKSHLKSK 613 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~--~~~~~sdeeI~~Al~~a~l~ef 613 (677)
...+.++.+++.+|.+.++..+++.||. ++..--..+...+++.++..-+
T Consensus 52 ----------------------------~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~il 103 (665)
T 2dy1_A 52 ----------------------------TPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALV 103 (665)
T ss_dssp ----------------------------SHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEE
T ss_pred ----------------------------CHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEE
Confidence 5556677777778877777777788873 3322122556667776665544
Q ss_pred Hh
Q psy845 614 VV 615 (677)
Q Consensus 614 I~ 615 (677)
+.
T Consensus 104 Vv 105 (665)
T 2dy1_A 104 AV 105 (665)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-07 Score=90.39 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=46.1
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc---HH----HhhhhcccccCCcc
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE---LE----TLRSRLSVIPQDPV 522 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~---~~----~~~~~i~~v~q~~~ 522 (677)
+++++++.+| ..+|+|||||||||++++|.++..+..|+..-.+. .+++- .. ..+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASR-ISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSS-GGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccccccccc-chheeecccccCCCCceEEEEEEEeCCC
Confidence 5788999999 99999999999999999999988777765332221 11110 00 13456788888753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-07 Score=110.76 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=41.6
Q ss_pred ccEEEEeeeEEe-----CCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 435 GTIKFKNVSLRY-----RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 435 g~I~fknVsFsY-----~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
+.+++++..--. +++.+.|++|+||++++|+.++|+|||||||||++|++.+
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 467777753222 1123579999999999999999999999999999999865
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-07 Score=91.02 Aligned_cols=39 Identities=33% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 450 ~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
..+.++|+||++++|+.++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999765
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-08 Score=99.28 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh---cCCCCCccEEEECCEe
Q psy845 463 HGENIGIVGRTGAGKSSLLVALF---RLVELSSGQIKIDDFD 501 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~---r~y~p~~G~I~IdG~d 501 (677)
++++++|+||+||||||++++|+ |+..|+.|+|..+|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 47999999999999999999999 9999999988776644
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-07 Score=92.34 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=27.7
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
++++|++++|+|++||||||+++.|.+.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 577899999999999999999999999874
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-07 Score=99.55 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=46.8
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+++++||++++|+.++++|++|+||||++..|++.+.+.+|+|.+.+.|....
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~ 146 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA 146 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 45778888999999999999999999999999999999999999988887553
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-07 Score=94.37 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=49.9
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc------cHHH----hhhhcccccCCccccc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV------ELET----LRSRLSVIPQDPVLFN 525 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l------~~~~----~~~~i~~v~q~~~lf~ 525 (677)
+.+.++|+.++|+|++||||||++++|.+. +|+|.++|.|.... ...+ .++++++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 335578999999999999999999999997 78999999886432 1111 2467899999876654
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-07 Score=101.64 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=50.0
Q ss_pred CccEEEEeeeEEeCCCCCcccc--------------ceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLA--------------NVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLk--------------nISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++.++|+||+|.||++ +.+|+ |+++.+.+||+++|+||+|+|||||++.|+|..
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 5789999999999876 46899 999999999999999999999999999999975
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.7e-08 Score=108.01 Aligned_cols=45 Identities=29% Similarity=0.279 Sum_probs=40.0
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEE-ECCEecc
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIK-IDDFDIA 503 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~-IdG~dI~ 503 (677)
..+++|+.++|+|+|||||||++++|++.+.|++| ++. +||.+++
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 36789999999999999999999999999999987 784 8987653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.6e-07 Score=88.45 Aligned_cols=46 Identities=15% Similarity=0.051 Sum_probs=36.4
Q ss_pred cccceee-EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCE
Q psy845 453 VLANVSF-RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500 (677)
Q Consensus 453 VLknISl-~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~ 500 (677)
.|+++.. .+++|+.++|+||+||||||+++.+++ .+..+.+++++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 5666654 689999999999999999999999999 444455565543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=98.15 E-value=7.2e-07 Score=106.24 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=40.3
Q ss_pred CCCCCChHHHHHHHHHHHHhccc--hhh------------------------cccccce------ecccccccEEEEE--
Q psy845 626 QGDQLSLGEKQLLCLARALLRKT--KKK------------------------KKSGVNI------TRPVTSCDKVLVM-- 671 (677)
Q Consensus 626 ~G~~LSGGQRQRIaIARALLr~p--~IL------------------------~~~~~TI------LsTI~~aDrIlVL-- 671 (677)
...+||||||||++||+||..+| +++ ...|.|| +..++.||||++|
T Consensus 501 ~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp 580 (972)
T 2r6f_A 501 SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGP 580 (972)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCC
Confidence 56799999999999999999985 444 1245662 3456779999999
Q ss_pred ----eCCeeC
Q psy845 672 ----DNGQAL 677 (677)
Q Consensus 672 ----d~GrIV 677 (677)
++|+++
T Consensus 581 gaG~~gG~iv 590 (972)
T 2r6f_A 581 GAGIHGGEVV 590 (972)
T ss_dssp SSGGGCCSEE
T ss_pred CccCCCCEEE
Confidence 688874
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3e-07 Score=92.76 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=42.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 571 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~ 571 (677)
-+.+|.||||||||+++|.|+.+|++|+|+++|.++...+..++++.
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 46789999999999999999999999999999999999888776554
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.5e-07 Score=91.55 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=39.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 569 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR 569 (677)
.+.+|.||||||||+++|.|+.+|++|+|.++|.++...+..+.+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 367899999999999999999999999999999998776665543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.11 E-value=6.2e-07 Score=91.95 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=31.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhc-cccccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELS-SGQIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~-~g~i~~~~~~~ 560 (677)
+.+|.||||||||+++|+|+++|+ +|+|.++|.++
T Consensus 29 ~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 29 LVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp EEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred EEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 457999999999999999999999 99999998764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=4.1e-07 Score=92.86 Aligned_cols=36 Identities=28% Similarity=0.554 Sum_probs=33.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
.+.+|.||||||||+++|.|+.+|++|+|.++|.++
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 367899999999999999999999999999999874
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.09 E-value=5.2e-07 Score=97.60 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=38.6
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
.+++++|+++++|+.++|+||+||||||++++|++. .+|++..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 589999999999999999999999999999999985 4676544
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.09 E-value=5.1e-07 Score=91.61 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=33.2
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+-+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 61 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD 61 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 346789999999999999999999999999999976
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.6e-07 Score=93.88 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=33.8
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|.|+.+|++|+|+++|.++
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 467899999999999999999999999999999885
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.08 E-value=5e-07 Score=92.99 Aligned_cols=35 Identities=34% Similarity=0.455 Sum_probs=32.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 74 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN 74 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 36789999999999999999999999999999987
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.9e-07 Score=91.95 Aligned_cols=35 Identities=46% Similarity=0.673 Sum_probs=32.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~ 72 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 72 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 35789999999999999999999999999999976
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.07 E-value=6.1e-07 Score=90.80 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=32.8
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 65 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 36789999999999999999999999999999976
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.06 E-value=5.3e-07 Score=91.12 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD 69 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 36789999999999999999999999999999976
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.06 E-value=5.3e-07 Score=92.49 Aligned_cols=37 Identities=32% Similarity=0.498 Sum_probs=34.6
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
-+.+|.||||||||+++|.|+.+|++|+|.++|.++.
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN 71 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcc
Confidence 3678999999999999999999999999999999875
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=98.06 E-value=5.7e-07 Score=92.54 Aligned_cols=34 Identities=35% Similarity=0.630 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 54 ~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 87 (263)
T 2olj_A 54 VVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGIN 87 (263)
T ss_dssp EEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 5789999999999999999999999999999976
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.6e-07 Score=95.26 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=54.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
+..+|+++.|++. . +++|++ +|++++++|++|+||||++..|++.+.+.+|+|.+.|.|.+.
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 5567788888543 1 788888 999999999999999999999999999999999999988865
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.6e-07 Score=103.31 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=50.4
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+++++...|.+ +.+++++++++++| +.|+||+|+|||||++++++... .|.+.++|.++.+.
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM 103 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSS
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHh
Confidence 45566555643 35899999999999 99999999999999999999864 78888888776543
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=6.8e-07 Score=92.16 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=32.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+++|++|+|.+||.+
T Consensus 48 ~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 82 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 36789999999999999999999999999999976
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.4e-07 Score=89.93 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=46.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh-HHHHhhhccccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~LR~~I~~V~Qd~~LFsg 584 (677)
-+.+|.||||||||+++|.|++ | |+|.+ |.+++..+ ....|+.++|++|++.+|..
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 4678999999999999999999 5 99999 77775542 23467899999999988854
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.7e-07 Score=92.27 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=32.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.++
T Consensus 51 ~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 51 ILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMP 85 (279)
T ss_dssp EEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCC
T ss_pred EEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 57899999999999999999999999999999874
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-06 Score=81.92 Aligned_cols=46 Identities=37% Similarity=0.423 Sum_probs=39.7
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc--EEEECCEeccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG--QIKIDDFDIAS 504 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G--~I~IdG~dI~~ 504 (677)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL 77 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH
Confidence 56666 8999999999999999999999999987 58 88888876543
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=5.6e-07 Score=94.72 Aligned_cols=36 Identities=53% Similarity=0.827 Sum_probs=33.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|+|+++|++|+|.+||.|+
T Consensus 83 vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i 118 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI 118 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred EEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 467899999999999999999999999999999873
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.99 E-value=9.3e-07 Score=90.54 Aligned_cols=34 Identities=32% Similarity=0.551 Sum_probs=32.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 45 ~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 78 (256)
T 1vpl_A 45 GLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN 78 (256)
T ss_dssp EEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 5689999999999999999999999999999876
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-06 Score=85.64 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=39.5
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
.++|+.++|+|++||||||+++.|.+.+++.+|++.+.|.|....
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 567999999999999999999999999998999998877665444
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.96 E-value=8.9e-07 Score=89.41 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=37.4
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHH--------HHhhhccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE--------TLRSRLSVIPQD 578 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--------~LR~~I~~V~Qd 578 (677)
+.+.+|.||||||||+++|.++..|++|+|.++|.++...+.. ..|.++++|+|+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 3467899999999999999999999999999999998554332 247789999986
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-06 Score=94.85 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=34.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+-+.+|.||||||||+++|.|+.+|++|+|++||.++
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 67 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 3467899999999999999999999999999999874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-06 Score=90.03 Aligned_cols=35 Identities=37% Similarity=0.488 Sum_probs=32.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~ 70 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGER 70 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 36789999999999999999999999999998864
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-06 Score=94.25 Aligned_cols=37 Identities=32% Similarity=0.480 Sum_probs=34.2
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+-+.+|.||||||||+++|.|+.+|++|+|++||.|+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 3467899999999999999999999999999999985
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-06 Score=89.10 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=32.4
Q ss_pred ccccccCCCCCchhHHHHHHh--hhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~--~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+ ++|++|+|.++|.+
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~ 68 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGEN 68 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEE
Confidence 367899999999999999999 89999999999976
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-06 Score=94.13 Aligned_cols=47 Identities=26% Similarity=0.486 Sum_probs=43.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 571 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~ 571 (677)
-+.+|.||||||||+++|.|+.+|++|+|.+||.|+...+.+++++.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 46789999999999999999999999999999999999999887765
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.5e-06 Score=80.34 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=42.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhh-hhcccccCCcc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPV 522 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~-~~i~~v~q~~~ 522 (677)
.+|+.++|+|++||||||+++.|++.+ |.+.+|+.++..- ..++ ...|..+|+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~~--~~~~~~~~g~~~~~~~ 61 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPR--RNIEKMASGEPLNDDD 61 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCCH--HHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccch--HHHHHhhcCcCCCccc
Confidence 469999999999999999999999865 8899998776542 2222 25677777643
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.6e-06 Score=79.27 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=34.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-----------CccEEEECCEecc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVEL-----------SSGQIKIDDFDIA 503 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p-----------~~G~I~IdG~dI~ 503 (677)
+++++|++|||||||++.+++...+ +.|+|.++|.+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 7999999999999999999998765 5799999998764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.7e-06 Score=92.90 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=33.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
.+.+|.||||||||+++|.|+.+|++|+|.+||.++
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 79 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV 79 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC
Confidence 357899999999999999999999999999999863
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.5e-06 Score=93.71 Aligned_cols=38 Identities=37% Similarity=0.427 Sum_probs=35.0
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
.+.+|.||||||||+++|.|+.+|++|+|.+||.+++.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~ 69 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcc
Confidence 46789999999999999999999999999999998753
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-06 Score=86.64 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
.+.+|.||||||||+++|.|+.+|++|+|.++|
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 70 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 357899999999999999999999999999976
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.7e-06 Score=92.97 Aligned_cols=36 Identities=31% Similarity=0.543 Sum_probs=33.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
.+.+|.||||||||+++|.|+.+|++|+|.+||.++
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV 67 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC
Confidence 367899999999999999999999999999999873
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.90 E-value=3.3e-06 Score=80.41 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
-+.+|+||||||||+++|.|+. |++|+|.++|.++.+.. ..+ .+++|++.+|.-|+.||+..
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~~~~q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---GKMIYHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---TEEEEEEECTTCSCTTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---CcceeccccccCCcHHHHHH
Confidence 3568999999999999999999 99999999999986431 112 27999999998899999953
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.7e-06 Score=88.88 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=31.6
Q ss_pred cccccCCCCCchhHHHHHHh--hhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~--~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+ ++|++|+|.++|.+
T Consensus 50 ~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~ 85 (267)
T 2zu0_C 50 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 85 (267)
T ss_dssp EEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 56899999999999999999 68999999999976
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.9e-06 Score=92.66 Aligned_cols=36 Identities=33% Similarity=0.607 Sum_probs=33.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
.+.+|.||||||||+++|.|+.+|++|+|.+||.++
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV 67 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 367899999999999999999999999999999873
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.88 E-value=2e-06 Score=87.77 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=31.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+.+|+ |+|.++|.+
T Consensus 30 ~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~ 62 (249)
T 2qi9_C 30 HLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQP 62 (249)
T ss_dssp EEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEE
T ss_pred EEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEE
Confidence 678999999999999999999999 999999876
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.1e-06 Score=92.74 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=33.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|.|+.+|++|+|++||.++
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 75 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 75 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence 357899999999999999999999999999999873
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-06 Score=92.81 Aligned_cols=35 Identities=37% Similarity=0.436 Sum_probs=32.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+.+|.||||||||+++|.|+.+|++|+|.+||.+
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~ 63 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD 63 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 46789999999999999999999999999999986
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.86 E-value=2e-05 Score=84.66 Aligned_cols=39 Identities=38% Similarity=0.471 Sum_probs=32.0
Q ss_pred CcE-EEEEcCCCCChHHHHHHHhcCCC-----------CCccEEEECCEec
Q psy845 464 GEN-IGIVGRTGAGKSSLLVALFRLVE-----------LSSGQIKIDDFDI 502 (677)
Q Consensus 464 GE~-VAIVGpSGSGKSTLi~LL~r~y~-----------p~~G~I~IdG~dI 502 (677)
|-+ ++|||++|||||||+|.|+|... |..|++.++|.++
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 444 99999999999999999999765 6778999998765
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.84 E-value=1.5e-06 Score=90.61 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=38.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccc---cccchhhhhHHHHhhhcccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSRLSVIPQDPVLFN 583 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~---~~~~~~~~~~~~LR~~I~~V~Qd~~LFs 583 (677)
+.+|.||||||||+++|.|+.+|++|+|.+ +|.+++......-++++++|+|+|-+..
T Consensus 173 ~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp EEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred EEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 678999999999999999999999999999 8988876542111247999999997653
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.5e-05 Score=75.33 Aligned_cols=26 Identities=31% Similarity=0.088 Sum_probs=22.8
Q ss_pred CCCCCChHHHHHHHHH------HHHhccchhh
Q psy845 626 QGDQLSLGEKQLLCLA------RALLRKTKKK 651 (677)
Q Consensus 626 ~G~~LSGGQRQRIaIA------RALLr~p~IL 651 (677)
...+||||||||++|| ||++++|+++
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~ll 85 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLL 85 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEE
Confidence 4679999999999876 9999999866
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.6e-06 Score=92.99 Aligned_cols=38 Identities=37% Similarity=0.530 Sum_probs=34.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
.+.+|.||||||||+++|.|+.+|++|+|.++|.+++.
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 71 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS 71 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcc
Confidence 36789999999999999999999999999999998753
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=5.3e-06 Score=79.89 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=42.3
Q ss_pred eEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc--------CCCCCccEEEECCEecc
Q psy845 443 SLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR--------LVELSSGQIKIDDFDIA 503 (677)
Q Consensus 443 sFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r--------~y~p~~G~I~IdG~dI~ 503 (677)
+++|++-. .+++++|++.+++ +++++|++|+|||||++.+.+ -..++.+.+.++|.++.
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~ 72 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 72 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEE
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEE
Confidence 46677653 5899999998887 699999999999999999987 23345678888886554
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.82 E-value=5.2e-06 Score=86.54 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc-CCCCCccEEEECCEecccccHHHhhhhcccccCCcccc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR-LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r-~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf 524 (677)
+..+.|+||+|+||||+++.++| ++.|+.|++.++|.+...-. .-+.++++++|++++.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 95 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLE 95 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEE
Confidence 34499999999999999999999 89999999999998875432 2378899999988753
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.2e-06 Score=90.86 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=43.8
Q ss_pred eeEEeCCCCCccccceeeEEeCCc------EEEEEcCCCCChHHHHHHHhcCCC--CCccEEEEC
Q psy845 442 VSLRYRDNWPLVLANVSFRINHGE------NIGIVGRTGAGKSSLLVALFRLVE--LSSGQIKID 498 (677)
Q Consensus 442 VsFsY~~~~~~VLknISl~I~~GE------~VAIVGpSGSGKSTLi~LL~r~y~--p~~G~I~Id 498 (677)
+++.|.+ .+.|++++.++.+++ .+||+|||||||||++++|.++++ |++|++.+-
T Consensus 66 l~~~~~~--~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 66 LSFYVTA--RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp HHHHHHH--HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred HHHhhcc--hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 3444543 257888888888887 899999999999999999999987 567775543
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=9.3e-06 Score=77.82 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=31.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC-----CC------CccEEEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV-----EL------SSGQIKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y-----~p------~~G~I~IdG~dI 502 (677)
+++++|++|||||||++.++|.. .| ..|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 79999999999999999999973 23 367899999765
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.1e-05 Score=88.13 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=35.8
Q ss_pred cccccCCCCCchhHHHHHHhh------------hhccccccccccchhhhhHHHHhhhcccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLV------------ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~------------~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs 583 (677)
+.+|+||||||||+++|+|.. ++.+|++.++|.++.-.+....|+..++.+|+...|.
T Consensus 184 aivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 184 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred EEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 467999999999999999984 3778999999987765555555666666666655553
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.5e-06 Score=86.26 Aligned_cols=34 Identities=38% Similarity=0.674 Sum_probs=31.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+.+|.||||||||+++|.|+++| +|+|.+||.+
T Consensus 49 ~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~ 82 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKN 82 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEE
Confidence 367899999999999999999997 8999999976
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2.6e-06 Score=80.88 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=33.0
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
|+++++|+.++|+||+|+|||||++.+++...|++|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 567788999999999999999999999999987777
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.76 E-value=1.2e-05 Score=87.53 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=38.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc------------CCCCCccEEEECCEec
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFR------------LVELSSGQIKIDDFDI 502 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r------------~y~p~~G~I~IdG~dI 502 (677)
++++|+++||||++|||||||+|.|+| ..+|+.|.+.++|..+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~ 70 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 70 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcch
Confidence 467899999999999999999999999 6789999999988543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=5.8e-06 Score=85.16 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=20.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+.+|++|++.++|.+
T Consensus 6 ~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~ 39 (270)
T 3sop_A 6 MVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK 39 (270)
T ss_dssp EEEESSSSSHHHHHHHHHHHHC------------
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc
Confidence 5689999999999999999999999999998865
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.75 E-value=4.2e-06 Score=86.06 Aligned_cols=34 Identities=38% Similarity=0.546 Sum_probs=31.4
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+. |++|+|.++|.+
T Consensus 33 ~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~ 66 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISGLL-PYSGNIFINGME 66 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEE
Confidence 3568999999999999999999 999999999876
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.6e-06 Score=93.59 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=55.9
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc-cEEEECCEecccccHHHhhhhcccccCCc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS-GQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~-G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
..+++++++.+++|+.+.|+||+|+||||+++.+++..++.. |.+.+++.+.... ...++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~ 113 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence 368999999999999999999999999999999999999988 7899988776543 45566666554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=5.8e-06 Score=78.32 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=34.9
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc--EEEECCEeccc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSG--QIKIDDFDIAS 504 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G--~I~IdG~dI~~ 504 (677)
++|+.++++|++||||||+.++|.+.+.+ .| .+.+||.++++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998766 56 67777766544
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=8.7e-06 Score=82.54 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+-.++|+||+||||||+.+.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.69 E-value=4.8e-06 Score=88.18 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=46.7
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
.++++++++.++|++++++|++|+||||+++.|++.+.+.+|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 5889999999999999999999999999999999999888888887666654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.6e-05 Score=93.52 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=40.8
Q ss_pred ccEEEEeeeEEeCC-----CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 435 GTIKFKNVSLRYRD-----NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 435 g~I~fknVsFsY~~-----~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+.+++++.. .|- +++.|++|+||+ ++|+.++|+|||||||||++|+++|+
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 357776652 221 234699999999 99999999999999999999999995
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=1.4e-05 Score=89.15 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=37.2
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 564 (677)
..+.+|.||||||||+++|.|+.+|++|+|.++|.++...+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 44678999999999999999999999999999999987654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.8e-05 Score=73.25 Aligned_cols=50 Identities=28% Similarity=0.420 Sum_probs=31.1
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc----C----CCCCccEEEECCEecc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFR----L----VELSSGQIKIDDFDIA 503 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r----~----y~p~~G~I~IdG~dI~ 503 (677)
+++++|++.++. +++++|++|+|||||++.+.+ - ..++.+++.++|..+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~ 70 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFT 70 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEE
Confidence 789999998877 899999999999999999997 2 3344567778876554
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=7.4e-06 Score=80.04 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=39.7
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc--EEEECCEecc
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG--QIKIDDFDIA 503 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G--~I~IdG~dI~ 503 (677)
..+++|+.++++|++||||||+.+.|.+.++|+.| .+.+||.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45678999999999999999999999999988889 8999876554
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.58 E-value=1.4e-05 Score=77.75 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=26.2
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
..+|..++++|||||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46799999999999999999999998764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=1.2e-05 Score=87.46 Aligned_cols=35 Identities=49% Similarity=0.875 Sum_probs=32.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|.|+.+ ++|+|++||.|+
T Consensus 50 ~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i 84 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSW 84 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBT
T ss_pred EEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEEC
Confidence 46789999999999999999998 999999999873
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=9.9e-06 Score=81.72 Aligned_cols=28 Identities=43% Similarity=0.660 Sum_probs=26.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
.+.+|.||||||||+++|.|+++|++|+
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLSALLAEMDKVEGH 61 (237)
T ss_dssp EEEECSTTSSHHHHHHHHTTCSEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 3678999999999999999999999996
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.56 E-value=2.7e-05 Score=72.79 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
.|+.++|+||+||||||+.++|++.+.+ ..+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999997754 55654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.55 E-value=1.1e-05 Score=80.82 Aligned_cols=28 Identities=43% Similarity=0.657 Sum_probs=26.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
-+.+|.||||||||+++|.|+++|++|+
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 64 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMGELEPSEGK 64 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCccE
Confidence 3678999999999999999999999996
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.55 E-value=5.3e-05 Score=71.22 Aligned_cols=41 Identities=41% Similarity=0.516 Sum_probs=31.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCC------------CccEEEECCEec
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVEL------------SSGQIKIDDFDI 502 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p------------~~G~I~IdG~dI 502 (677)
++|.++++||++|+|||||++.+++...+ ..+.+.++|.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 47899999999999999999999986421 246777777654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.55 E-value=2.5e-05 Score=77.53 Aligned_cols=124 Identities=18% Similarity=0.108 Sum_probs=65.4
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc-ccCCCCChHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL-DPFGRCHDTELWDA 604 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI-~~~~~~sdeeI~~A 604 (677)
+.+|.||||||||+++|.|+ +|++|+|.. .++. .+....|++++||||++ +||+ .+.... .+.+...
T Consensus 26 ~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-~~~~~~~~~ig~v~q~~-------~enl~~~~~~~-~~~~~~~ 93 (208)
T 3b85_A 26 FGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-RPAVEAGEKLGFLPGTL-------NEKIDPYLRPL-HDALRDM 93 (208)
T ss_dssp EEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-ECSCCTTCCCCSSCC-------------CTTTHHH-HHHHTTT
T ss_pred EEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-CCchhhhcceEEecCCH-------HHHHHHHHHHH-HHHHHHh
Confidence 56899999999999999999 999999953 3332 22235688999999998 7777 332100 0000000
Q ss_pred HHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc------------------c-cccce--ecccc
Q psy845 605 LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------------K-SGVNI--TRPVT 663 (677)
Q Consensus 605 l~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------------~-~~~TI--LsTI~ 663 (677)
.+...+.+.++ . ++ |||||++||||++++|+++. . +++|| .|...
T Consensus 94 ~~~~~~~~~l~----------~--gl--Gq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l~~g~tiivtHd~~ 159 (208)
T 3b85_A 94 VEPEVIPKLME----------A--GI--VEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRLGFGSKMVVTGDIT 159 (208)
T ss_dssp SCTTHHHHHHH----------T--TS--EEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTBCTTCEEEEEEC--
T ss_pred ccHHHHHHHHH----------h--CC--chHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHhcCCCEEEEECCHH
Confidence 00001111111 1 11 99999999999999999761 1 24443 44455
Q ss_pred cccEEEEEeCCe
Q psy845 664 SCDKVLVMDNGQ 675 (677)
Q Consensus 664 ~aDrIlVLd~Gr 675 (677)
.+|++...+||.
T Consensus 160 ~~~~~~~~~~G~ 171 (208)
T 3b85_A 160 QVDLPGGQKSGL 171 (208)
T ss_dssp ----------CC
T ss_pred HHhCcCCCCCcH
Confidence 577777777774
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.54 E-value=1.1e-05 Score=86.78 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=35.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE-EECCEe
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI-KIDDFD 501 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I-~IdG~d 501 (677)
-+++|+.+.|.||+|||||||+..+++...+.+|.+ ++|+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 388999999999999999999999999887777754 666543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.53 E-value=1.5e-05 Score=89.80 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=50.7
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccccc
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~ 518 (677)
.+++..+|.+ ..+++++++++ +|+.+.++||+|+||||+++++++...+..|+|..+|..-..-.....++.+|.++
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~ 162 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMP 162 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCc
Confidence 4566666643 25788999988 89999999999999999999999999999999998885432211222345566665
Q ss_pred CC
Q psy845 519 QD 520 (677)
Q Consensus 519 q~ 520 (677)
+.
T Consensus 163 ~~ 164 (543)
T 3m6a_A 163 GR 164 (543)
T ss_dssp -C
T ss_pred hH
Confidence 54
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=4.1e-05 Score=83.56 Aligned_cols=58 Identities=28% Similarity=0.373 Sum_probs=37.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC------------CCCccEEEECCEecccccHHHhhhhcccccCCcc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV------------ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 522 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y------------~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~ 522 (677)
-++||||++|+|||||+|.|+|.. +|.+|++.++|.++.-++..-.++..++.+|+..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e 250 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVE 250 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------C
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHH
Confidence 489999999999999999999985 3788999999997755543334444444444433
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=1.7e-05 Score=84.36 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=37.3
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
++|.+++|+|++|||||||+|.|.|...+++|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4578999999999999999999999998999999988877654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.52 E-value=1.9e-05 Score=74.70 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=53.4
Q ss_pred cccccccCCCCCchhHHHHHHhhhhcccccccccc--ch-hhhh---HHHHhhhccccccccc----------ccccchh
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF--DI-ASVE---LETLRSRLSVIPQDPV----------LFNGTIR 587 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~--~~-~~~~---~~~LR~~I~~V~Qd~~----------LFsgTIr 587 (677)
++..+|+||||||||+.+|..+..++.|...-.+. +. ..-. ...-+..+.++.|++. ....++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~i~r~~~ 107 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVY 107 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSSSEEEEEEEEC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCCcEEEEEEEEE
Confidence 56788999999999999999998888875443331 11 1100 0023567888888853 2222222
Q ss_pred hc----ccc-CCCCChHHHHHHHHHccch
Q psy845 588 YN----LDP-FGRCHDTELWDALEKSHLK 611 (677)
Q Consensus 588 EN----I~~-~~~~sdeeI~~Al~~a~l~ 611 (677)
++ ... +...+.+++.+.++..++.
T Consensus 108 ~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 108 PDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp TTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred eCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 11 111 1234667788888877765
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=1.7e-05 Score=84.19 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=34.8
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc--CCCCCccEEEECC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR--LVELSSGQIKIDD 499 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r--~y~p~~G~I~IdG 499 (677)
.+|++++++++ .|++||++|||||||++.|.| +.++.+|.+.-.+
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 48999999998 999999999999999999999 7777777664333
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.46 E-value=4.2e-05 Score=76.60 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
+|..++|.|++||||||+++.|...+.+ .+++....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 7999999999999999999999999988 67775543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=2.6e-05 Score=81.40 Aligned_cols=43 Identities=30% Similarity=0.356 Sum_probs=37.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECCEeccc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDFDIAS 504 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG~dI~~ 504 (677)
++|++++++||+||||||+++.|++.+.+++| +|.+-+.|...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 47999999999999999999999999998888 78876666643
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=2.9e-05 Score=84.89 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=30.4
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
+-+.+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g 104 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV 104 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECC
Confidence 4577899999999999999999999999877743
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.41 E-value=1.8e-05 Score=86.85 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=52.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+..++++..|++.. +++|++ +|+.++++|++||||||++..|++.+.+.+|+|.+.+.|...-
T Consensus 77 ~v~~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 77 TVYEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (425)
T ss_dssp HHHHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc
Confidence 34456677775431 678888 8999999999999999999999999999999999988887653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=2.4e-05 Score=81.56 Aligned_cols=28 Identities=43% Similarity=0.657 Sum_probs=26.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
-+.+|.||||||||+++|.|+++|++|+
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 94 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGELEPSEGK 94 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTSSCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 3678999999999999999999999996
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.35 E-value=5e-05 Score=74.23 Aligned_cols=99 Identities=23% Similarity=0.211 Sum_probs=72.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDAL 605 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al 605 (677)
+.+|.||||||||+++|.++++ ++| +.+||++..+.+ .+++++++++|+. +++ ++|+.......+
T Consensus 5 ~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~------- 69 (189)
T 2i3b_A 5 FLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP------- 69 (189)
T ss_dssp EEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC-------
T ss_pred EEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC-------
Confidence 4579999999999999999999 999 999999986554 5799999999997 554 466642110000
Q ss_pred HHccchhhHhhhhcccCCCC--CCCCCChHHHHHH-HHHH---HHhccchhh
Q psy845 606 EKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL-CLAR---ALLRKTKKK 651 (677)
Q Consensus 606 ~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI-aIAR---ALLr~p~IL 651 (677)
+...+..+ .|..+|+|||+++ +++| |+.++|+++
T Consensus 70 ------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvl 109 (189)
T 2i3b_A 70 ------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVC 109 (189)
T ss_dssp ------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCE
T ss_pred ------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEE
Confidence 00011233 4678999999998 5566 688888876
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=2.6e-05 Score=74.29 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|+|++||||||+.+.|++-+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999844
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.29 E-value=3e-05 Score=74.72 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=28.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhc---cccccccccchhhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASV 563 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~---~g~i~~~~~~~~~~ 563 (677)
+.+|.||||||||++.|+|+++|+ +|+|++||.++.+.
T Consensus 6 ~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~ 46 (171)
T 2f1r_A 6 SIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEI 46 (171)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--------
T ss_pred EEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccC
Confidence 457999999999999999999999 99999998876543
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.26 E-value=4.9e-05 Score=80.42 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=68.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDAL 605 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al 605 (677)
+.+|.||||||||+++|+|+++|++|.|.++|.+-. ....+|+++++++
T Consensus 175 ~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~--~~~~~~~~i~~~~----------------------------- 223 (330)
T 2pt7_A 175 IVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI--VFKHHKNYTQLFF----------------------------- 223 (330)
T ss_dssp EEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC--CCSSCSSEEEEEC-----------------------------
T ss_pred EEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc--ccccchhEEEEEe-----------------------------
Confidence 567999999999999999999999999999987621 1111222222221
Q ss_pred HHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------ccccc-c-e-----eccc
Q psy845 606 EKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------KKSGV-N-I-----TRPV 662 (677)
Q Consensus 606 ~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------~~~~~-T-I-----LsTI 662 (677)
| |||+||++||||+.++|+++ ..+++ | + .++.
T Consensus 224 ---------------------g----gg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 224 ---------------------G----GNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSE 278 (330)
T ss_dssp ---------------------B----TTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSSHH
T ss_pred ---------------------C----CChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccHHH
Confidence 1 89999999999999999965 12333 4 2 3345
Q ss_pred ccccEEEEEeCCe
Q psy845 663 TSCDKVLVMDNGQ 675 (677)
Q Consensus 663 ~~aDrIlVLd~Gr 675 (677)
+.||||++|++|+
T Consensus 279 ~~~dri~~l~~g~ 291 (330)
T 2pt7_A 279 EAFIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHhhhheehhcCC
Confidence 5689999998875
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.25 E-value=3.9e-05 Score=75.23 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=42.5
Q ss_pred cccce-eeEEeCCcEEEEEcCCCCChHHHHH-HHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 453 VLANV-SFRINHGENIGIVGRTGAGKSSLLV-ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 453 VLknI-Sl~I~~GE~VAIVGpSGSGKSTLi~-LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
.|+++ +--+++|+.++|.||+||||||++. ++....+...+.+++++.+-.+ ...+..+++|+.+|+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~-~~~~~~~~~g~~~~~ 79 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPV-QVRQNMAQFGWDVKP 79 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHH-HHHHHHHTTTCCCHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHH-HHHHHHHHcCCCHHH
Confidence 45555 5568999999999999999999954 5455544444566666543211 112223456666654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.25 E-value=4.6e-05 Score=77.69 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=25.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
-+.+|.||||||||+++|.|+.+|++|+
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIHRPIQGK 61 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 3678999999999999999999999995
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=3.9e-05 Score=81.99 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=36.9
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~ 496 (677)
..+.+.++|++..|... .++++++++| ++||++|+|||||++.|++...+..|.+.
T Consensus 14 ~~~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 14 TPGYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp -------CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred CCceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 34679999999988653 5899999965 99999999999999999987665555543
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00018 Score=69.50 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=21.2
Q ss_pred CCCCCChHHHHHHHHHHHHhc----cchhh
Q psy845 626 QGDQLSLGEKQLLCLARALLR----KTKKK 651 (677)
Q Consensus 626 ~G~~LSGGQRQRIaIARALLr----~p~IL 651 (677)
...+||||||||++||||+.. +|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~l 90 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFY 90 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 457899999999999999974 45654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.19 E-value=5e-05 Score=72.31 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=34.6
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE-EECCEec
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI-KIDDFDI 502 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I-~IdG~dI 502 (677)
.++|..+.++|++||||||+.+.|++.+.+.+|.+ .+|+.++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 45799999999999999999999999888777765 4565444
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.18 E-value=2.3e-05 Score=82.04 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=49.7
Q ss_pred CccccceeeEEeCCcE--EEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc-ccHHHhhhhcccccC
Q psy845 451 PLVLANVSFRINHGEN--IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS-VELETLRSRLSVIPQ 519 (677)
Q Consensus 451 ~~VLknISl~I~~GE~--VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~-l~~~~~~~~i~~v~q 519 (677)
+.++++++..+++|+. +.+.||+|+||||+++.+++...+.+|+..+.+.+..+ ...+.+|+.+...+|
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 3589999999999988 99999999999999999999887776654443333322 123445555544443
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00032 Score=64.99 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-+++++|++|+|||||++.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.18 E-value=9.9e-05 Score=77.23 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=38.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhh-HHHHhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRS 570 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~LR~ 570 (677)
+.+|.||||||||++.|.++++|++|++.++|.|..... .++++.
T Consensus 104 ~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~ 149 (302)
T 3b9q_A 104 MIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 149 (302)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHH
Confidence 568999999999999999999999999999999977653 344443
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.18 E-value=5.5e-05 Score=78.98 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=49.4
Q ss_pred EEeeeEEeCCCCCccccc-eeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 439 FKNVSLRYRDNWPLVLAN-VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 439 fknVsFsY~~~~~~VLkn-ISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
.+++...|++.. ++ +|++.+ |++++++|++|+||||++..|++.+.+.+|++.+.+.|...
T Consensus 77 ~~~l~~~~~~~~----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 77 YDELSNLFGGDK----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHTTCSC----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHhcccc----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 445555665431 45 788776 99999999999999999999999999888999998888654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00012 Score=71.26 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=20.4
Q ss_pred cccccCCCCCchhHHHHHHhhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVE 547 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~ 547 (677)
+.+|.||||||||+++|+|+++
T Consensus 8 ~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 8 VLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp EEECCTTSSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHhhCc
Confidence 5689999999999999999997
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=9.2e-05 Score=79.04 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=81.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC---CCCChHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF---GRCHDTELW 602 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~---~~~sdeeI~ 602 (677)
+.+|.||||||||+++|.|+.+||.|.+.+.|++.. +.++.+++ .++. . .+..+... .....+++.
T Consensus 75 gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~-----ev~~~i~~-~~~~-~----~~~~v~~~~~~~~~~~~r~~ 143 (347)
T 2obl_A 75 GIFAGSGVGKSTLLGMICNGASADIIVLALIGERGR-----EVNEFLAL-LPQS-T----LSKCVLVVTTSDRPALERMK 143 (347)
T ss_dssp EEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHH-----HHHHHHTT-SCHH-H----HTTEEEEEECTTSCHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHH-----HHHHHHHh-hhhh-h----hhceEEEEECCCCCHHHHHH
Confidence 568999999999999999999999999999998743 23333333 1111 0 11111100 011123444
Q ss_pred HHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhh------------------c--cccc---
Q psy845 603 DALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKK------------------K--KSGV--- 656 (677)
Q Consensus 603 ~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL------------------~--~~~~--- 656 (677)
.+.....+.++... .|.|..+ ...+||+|| ||+++| +.+|+.- . ..|.
T Consensus 144 ~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~ 217 (347)
T 2obl_A 144 AAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITA 217 (347)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEE
T ss_pred HHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeee
Confidence 44444444444332 2333322 567899999 999999 6777742 1 1244
Q ss_pred --ce---eccc--ccccEEEEEeCCeeC
Q psy845 657 --NI---TRPV--TSCDKVLVMDNGQAL 677 (677)
Q Consensus 657 --TI---LsTI--~~aDrIlVLd~GrIV 677 (677)
|| .|.+ .-||++.+|.+|+|+
T Consensus 218 ~~tVl~~thdl~~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 218 IYTVLLESDNVNDPIGDEVRSILDGHIV 245 (347)
T ss_dssp EEEEECCSSCCCCHHHHHHHHHCSEEEE
T ss_pred EEEEEEeCCCCCChhhhheEEeeCcEEE
Confidence 43 2222 238999999999984
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.17 E-value=9.8e-05 Score=71.42 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=41.9
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 582 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF 582 (677)
-.-+.+|.||||||||+++|.+.. |.+.+|+.++.... ..-+...++++|++..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDRW 84 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCcccc
Confidence 344677999999999999999987 89999988876432 22334678999987554
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00016 Score=69.01 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=26.7
Q ss_pred ceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 456 nISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999885
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=66.49 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC-----------CCCCccEEEECCEec
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL-----------VELSSGQIKIDDFDI 502 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~-----------y~p~~G~I~IdG~dI 502 (677)
-+++++|++|+|||||++.+++- .++..|.+.++|..+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 56 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKF 56 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEE
Confidence 37999999999999999999983 334556677776554
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=97.14 E-value=8.6e-05 Score=79.36 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=29.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
+.+|.||||||||+++|+|+++|++|.|.++|
T Consensus 179 ~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 179 VVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp EEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred EEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 56799999999999999999999999999875
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00017 Score=75.58 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=35.4
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 563 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 563 (677)
-+.+|.||||||||++.|.++++|++|++.++|.|....
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~ 143 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA 143 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCCh
Confidence 356799999999999999999999999999999997654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00013 Score=73.47 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=36.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
..++|..+.++|++||||||+.+.|.+.+. .|.+.+||.++++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 566788999999999999999999998764 3678888877654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00018 Score=76.32 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=55.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhh----hHHHHhhhcc--ccccccccc-ccchhhccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV----ELETLRSRLS--VIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~LR~~I~--~V~Qd~~LF-sgTIrENI~ 591 (677)
+.+|.||||||||+++|.++++|+.|++.++|.|.... ..+.++++++ +++|+..++ ..|++||+.
T Consensus 133 ~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 133 MFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 56899999999999999999999999999999998654 3445566666 899998887 468888884
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00024 Score=68.56 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=24.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
.++|+|++||||||+.+.|+++ |...+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6999999999999999999983 6556654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00013 Score=83.16 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=49.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhh-ccccccccccchhhh---hHHHHhhhcccccccccccc-cchhhccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~-~~g~i~~~~~~~~~~---~~~~LR~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
-+.+|+||||||||+++|.|+..| ++|.+.++|.++... +.+.+|+++++++|++.+++ .|++||+.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~ 119 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEIN 119 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHH
Confidence 477899999999999999999988 899999999996432 24578999999999998874 68999985
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0003 Score=76.62 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=35.3
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcC-----------CCCCccEEEECCEe
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRL-----------VELSSGQIKIDDFD 501 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~-----------y~p~~G~I~IdG~d 501 (677)
.++.|.+++|||++|+|||||++.|.+- .+|+.|.+.++|..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r 70 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDER 70 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCcc
Confidence 4567899999999999999999999998 78889999887743
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00015 Score=79.74 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=33.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+.+|.||||||||+++|.|+.+|++|.+.++|++.
T Consensus 161 ~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~ 195 (438)
T 2dpy_A 161 GLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERG 195 (438)
T ss_dssp EEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH
T ss_pred EEECCCCCCHHHHHHHHhcccCCCeEEEEEeceec
Confidence 78899999999999999999999999999999853
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00039 Score=65.06 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=22.6
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++..+| ..+|+|||||||||++.+|.
T Consensus 18 ~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred EEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4445555 88999999999999999987
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00043 Score=69.15 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=33.1
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
.+++++.+.++| +.|+||+|+||||+++.+++..... -+.+++.++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~ 83 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVE 83 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHH
Confidence 455555555555 9999999999999999999976422 47778776644
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00016 Score=69.59 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
...++|+|++||||||+.+.|++.+ |...+|+.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999998865 5566766554
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00019 Score=74.72 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=32.2
Q ss_pred ccccCCCCCchhHHHHHH-hhhhccccccccccchhhhhHHHHhhhcccccccccc
Q psy845 527 IVGRTGAGKSSLLVALFR-LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 581 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L 581 (677)
..|.||+|||||+++|.+ ++.|++|+++++|.+...-. .-+..+++++|++++
T Consensus 41 l~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 41 LYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHL 94 (354)
T ss_dssp EECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEE
T ss_pred EECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceE
Confidence 358999999999999999 99999999999998865432 237889999998876
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00016 Score=79.99 Aligned_cols=50 Identities=22% Similarity=0.119 Sum_probs=45.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccc-c-ccccccchhhhhHHHHhhhcccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSG-Q-IKIDDFDIASVELETLRSRLSVIPQDPVLFN 583 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g-~-i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs 583 (677)
-+.+|.||||||||+++|.|+++|++| + |++||. .|+.+++|||++.+|.
T Consensus 141 v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~~l~~ 192 (460)
T 2npi_A 141 VVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCISATP 192 (460)
T ss_dssp EEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccchhhcc
Confidence 467899999999999999999999999 9 999981 4889999999998864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00023 Score=76.44 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=37.4
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhh-HHHHh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLR 569 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~LR 569 (677)
+.+|.||||||||++.|.++++|++|++.++|.|..... .++++
T Consensus 161 ~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~ 205 (359)
T 2og2_A 161 MIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLE 205 (359)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHH
T ss_pred EEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHH
Confidence 568999999999999999999999999999999976553 34443
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00022 Score=74.67 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=33.3
Q ss_pred cccccCCCCCchhHHHHHHhh--------hhccccccccccchhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLV--------ELSSGQIKIDDFDIAS 562 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~--------~~~~g~i~~~~~~~~~ 562 (677)
..+|-||||||||++.|+++. .||.|+|.+||.+++.
T Consensus 8 ~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 8 LLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT
T ss_pred EEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC
Confidence 456999999999999999998 8999999999998764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00046 Score=65.10 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSS 492 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~ 492 (677)
+++++|++|+|||||++.+++...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 799999999999999999999754433
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00021 Score=67.65 Aligned_cols=113 Identities=17% Similarity=0.052 Sum_probs=74.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDAL 605 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al 605 (677)
+.+|.||||||||+++|.+. |+.|.+.+|+.++..... -++.+++++|++. .+.|+.+|+.... + ...
T Consensus 13 ~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~-----~--~~~ 80 (191)
T 1zp6_A 13 LLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA-----G--RYA 80 (191)
T ss_dssp EEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH-----H--HHH
T ss_pred EEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH-----H--HHh
Confidence 45799999999999999998 889999999888754421 1456789999876 5678888874210 0 011
Q ss_pred HHccchhhHhhhhc--ccC---C-CCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 606 EKSHLKSKVVTMRS--KLD---S-DVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 606 ~~a~l~efI~~LP~--Gld---T-~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..+-...++.... +++ . ......+|+||+||+++||++.++|+++
T Consensus 81 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 81 -KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp -HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred -ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 1111111111000 000 0 1123579999999999999999998865
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00028 Score=77.17 Aligned_cols=113 Identities=21% Similarity=0.182 Sum_probs=76.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhh----hHHHHhhhccc---------cccccccc--c-----cc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV----ELETLRSRLSV---------IPQDPVLF--N-----GT 585 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~LR~~I~~---------V~Qd~~LF--s-----gT 585 (677)
+.+|.||||||||+++|+++.+|++|+|.+++.++... +..++++++++ +.|+|.+. . .|
T Consensus 171 ~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et 250 (418)
T 1p9r_A 171 LVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLET 250 (418)
T ss_dssp EEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHH
T ss_pred EEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHH
Confidence 45799999999999999999999999999988766321 12234556655 44888763 1 36
Q ss_pred hhhccccC--C--------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 586 IRYNLDPF--G--------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 586 IrENI~~~--~--------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+++|+... + ..+..+..+.++..++.++. ...+|||||+|| ||||+..+|++.
T Consensus 251 ~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-----------~~~~LSgg~~QR--LaraL~~~p~~~ 313 (418)
T 1p9r_A 251 AQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-----------ISSSLLGVLAQR--LVRTLCPDCKEP 313 (418)
T ss_dssp HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-----------HHHHEEEEEEEE--EEEEECTTTCEE
T ss_pred HHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH--hhhhhcCCCCcc
Confidence 77776421 0 01123333445555554331 345899999999 999999999865
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00039 Score=78.07 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=42.6
Q ss_pred ceeeEEeCCcEEEEEcCCCCChHHHHHHHhc--CCCCCccEEEECCEecccc
Q psy845 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFR--LVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 456 nISl~I~~GE~VAIVGpSGSGKSTLi~LL~r--~y~p~~G~I~IdG~dI~~l 505 (677)
.+++++.+|.++.|+|+|||||||+++.|.. ++.++.|++.+.+.|.+..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~ 210 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML 210 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh
Confidence 4678888999999999999999999999876 6777778888888887654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00015 Score=72.00 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=44.0
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhh------hHHH----Hhhhcccccccccccc
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV------ELET----LRSRLSVIPQDPVLFN 583 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~------~~~~----LR~~I~~V~Qd~~LFs 583 (677)
.+-+..|.||||||||+++|.++ .|++.+++++.... ...+ .++.+++++|++.++.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 34466799999999999999998 78899999886532 2221 2578999999987764
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00018 Score=76.38 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=27.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhcc----cccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSS----GQIKID 556 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~----g~i~~~ 556 (677)
+.+|.||||||||+++|.|+++|++ |+++++
T Consensus 174 ~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 174 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF 208 (365)
T ss_dssp EEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 6789999999999999999999999 765553
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0012 Score=62.55 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=29.2
Q ss_pred EEEEEcCCCCChHHHHHHHh-cC----CCCCcc----EEEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALF-RL----VELSSG----QIKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~-r~----y~p~~G----~I~IdG~dI 502 (677)
+++++|++|+|||||++.++ +- +.|+.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 79999999999999996554 43 677777 677777554
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00039 Score=73.67 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=53.2
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH----HHHhhhcccccccccccc
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL----ETLRSRLSVIPQDPVLFN 583 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~----~~LR~~I~~V~Qd~~LFs 583 (677)
-+-+.+|.||||||||+++|.|+..|++|++.+.+.|...... ...|+++++++|++.+|.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 3457789999999999999999999999999999999876542 356889999999999985
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00048 Score=66.50 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEe
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFD 501 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~d 501 (677)
-..++|+|+|||||||+++.|.+...+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 3777877654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00054 Score=73.22 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id 498 (677)
.+..++|+|||||||||+++.++..+.+.++.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999998877888888774
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00045 Score=66.55 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=64.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDAL 605 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al 605 (677)
+.+|.||||||||+++|.|+++ +.++|.+..+......++++++++|++ +..+|+. ....
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~--~~~~-------- 63 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF--SSKF-------- 63 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE--EETT--------
T ss_pred EEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH--Hhhc--------
Confidence 4579999999999999999995 778887765443335688999999997 4455652 1100
Q ss_pred HHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHH-----Hhccchhh
Q psy845 606 EKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARA-----LLRKTKKK 651 (677)
Q Consensus 606 ~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARA-----LLr~p~IL 651 (677)
+ ++ +..+ .+.+||||||||++|||| ++++|+++
T Consensus 64 -------~----~~--~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~ll 103 (178)
T 1ye8_A 64 -------F----TS--KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVI 103 (178)
T ss_dssp -------C----CC--SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred -------C----Cc--cccccccccCcCHHHHHHHHHHhhccccccccCCCEE
Confidence 0 00 0112 467899999999999996 99999877
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00039 Score=67.33 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=48.5
Q ss_pred cccccCCCCCchhHHHHHHhhhh-------ccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL-------SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~-------~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
+.+|.||||||||+++|.++..+ +.|.+++++++... ++++++++|+..++..|+.||+.+....
T Consensus 29 ~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 29 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR------PERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC------HHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC------HHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 56799999999999999997665 34478888776311 2456777788777777999999764433
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00066 Score=64.61 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
..+|+|+|++||||||+.+.|++. |-..+|..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 457999999999999999999995 666666544
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00063 Score=65.30 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00049 Score=76.95 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=55.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhh----hHHH--Hhhhccccccccccc-ccchhhccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV----ELET--LRSRLSVIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~--LR~~I~~V~Qd~~LF-sgTIrENI~ 591 (677)
+.+|.||||||||++.|.|+++++.|+|.++|.|.... .+.. .|+++++++|++.++ ..|+++|+.
T Consensus 297 ~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 297 LMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 57899999999999999999999999999988886543 1233 478899999998765 568899885
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00074 Score=63.61 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.+|..++++|++||||||+.+.|+.-
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00041 Score=77.75 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=71.4
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc--cchhhccc------c----C
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN--GTIRYNLD------P----F 593 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs--gTIrENI~------~----~ 593 (677)
+.+|.||||||||+++|+++.+|++|.+.++|.+--..+. ++.++++.|+.. .. .|.++++. | .
T Consensus 264 ~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 264 IVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp EEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred EEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHHHHHHHhhccCCCeEEe
Confidence 6679999999999999999999999999999987222221 345666666654 22 24555442 1 1
Q ss_pred CCCChHHHHHHHHHccc-------------hhhHhhhh---cccC--------CCC-CCCCCChHHHHHHHHHH
Q psy845 594 GRCHDTELWDALEKSHL-------------KSKVVTMR---SKLD--------SDV-QGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l-------------~efI~~LP---~Gld--------T~v-~G~~LSGGQRQRIaIAR 642 (677)
++..++|...+++.++. .+.+.++. .|.. ..+ ....+|||||||.++|.
T Consensus 340 gEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai 413 (511)
T 2oap_1 340 GEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEV 413 (511)
T ss_dssp SCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEE
T ss_pred CCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEE
Confidence 45666777666665431 12233322 2222 111 34468999999988763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00045 Score=71.97 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=73.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccc---cccchhhhhHHHHh-hhcccccccccc------cccchhhcc--ccC
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLR-SRLSVIPQDPVL------FNGTIRYNL--DPF 593 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~---~~~~~~~~~~~~LR-~~I~~V~Qd~~L------FsgTIrENI--~~~ 593 (677)
+.+|.||||||||+++|. +.+|++|+|.. +|.+.+..+. ..+ +.+|+|+|+|-+ .+.|+ ||+ .+.
T Consensus 169 ~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~ 245 (302)
T 2yv5_A 169 ILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFR 245 (302)
T ss_dssp EEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCG
T ss_pred EEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHH
Confidence 678999999999999999 99999999999 8888765432 222 379999999955 35678 887 221
Q ss_pred ---------CC-----CChHHHHHHHHHccchh-hHhhhhcccCCCCCCCCCChHHHHHHHHHH
Q psy845 594 ---------GR-----CHDTELWDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 594 ---------~~-----~sdeeI~~Al~~a~l~e-fI~~LP~GldT~v~G~~LSGGQRQRIaIAR 642 (677)
.. ..++.+.++++..++.+ ...+. ...|||.+++++.|||
T Consensus 246 ~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~---------~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 246 EFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY---------LKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH---------HHHTTCCCTTHHHHSS
T ss_pred HHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH---------HHHHHHHHHHHHHHhc
Confidence 11 12356888899988875 44433 2468888888899987
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00056 Score=67.41 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=37.7
Q ss_pred ccccccCCCCCchhHHHHH-Hhh------------hhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 525 NGIVGRTGAGKSSLLVALF-RLV------------ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~-~~~------------~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
-+.+|.||||||||+++|. +++ +|++|++ +|.++...+.+..++. ..++.+++.+++.+|+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 103 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSNGEIIEHAEVFGNF 103 (231)
T ss_dssp EEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHTTCEEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhcCceehhhhhcccc
Confidence 3678999999999999999 999 7888875 6666655555555443 3456666666666665
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00096 Score=62.39 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
|..+.++|++||||||+.+.|+.-++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998653
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00038 Score=67.26 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=30.4
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccc--cccccchh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQI--KIDDFDIA 561 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i--~~~~~~~~ 561 (677)
..+|.||||||||+++|.+... +.|.+ ++|+.++.
T Consensus 29 ~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 29 WVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp EEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4579999999999999999998 88998 89876654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00059 Score=71.05 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=51.6
Q ss_pred ccccccccCCCCCchhHHHHHHhhh--hccccccc---cccchhhhhHHHHhhhccccccccccc-ccchhhccc
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVE--LSSGQIKI---DDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~--~~~g~i~~---~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~ 591 (677)
..-|.+|.||||||||+++|.++.+ |++|++.+ ||.+.. ...|+.++++ |+.-++ ..|+.+|+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~ 150 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVK 150 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHH
Confidence 3457789999999999999999999 99999999 988753 2346789999 766554 557888874
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=62.36 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC----CCCCcc----EEEECCEec
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL----VELSSG----QIKIDDFDI 502 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~----y~p~~G----~I~IdG~dI 502 (677)
.=+++++|++|+|||||++.+.+- +.|+.| ++.+++..+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l 62 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEE
Confidence 348999999999999999999976 355666 455554443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00016 Score=68.99 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=31.8
Q ss_pred ccccccCCCCCchhHHHHHHhhhh-----------ccccccccccchh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL-----------SSGQIKIDDFDIA 561 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~-----------~~g~i~~~~~~~~ 561 (677)
-+.+|+||||||||++++.+...+ ++|++.++|.++.
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 367899999999999999998765 6889999987764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00056 Score=73.46 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=28.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhc-cccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELS-SGQIKIDD 557 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~-~g~i~~~~ 557 (677)
-+.+|.||||||||+++|+|+++|+ +|+|.+.+
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 3567999999999999999999998 89886644
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0011 Score=61.22 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|.|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0003 Score=67.76 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEE
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQI 495 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I 495 (677)
.++|+|++||||||+++.|.+.+++...++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999999886544444
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00065 Score=67.73 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=59.6
Q ss_pred cccccCCCCCchhHHHHHHhhhh--ccccccccccchhhhhHHHHhhhccccccccccccc-ch----hhccccCCC---
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TI----RYNLDPFGR--- 595 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~--~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TI----rENI~~~~~--- 595 (677)
+.+|.||||||||+++|+++.+| .+|.+.+.+.+... ..++.++|++|++.+|.. +. .||+.+++.
T Consensus 20 ~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg 95 (219)
T 1s96_A 20 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG 95 (219)
T ss_dssp EEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred EEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCC
Confidence 56799999999999999999996 78999888765432 346789999999999965 55 688865442
Q ss_pred CChHHHHHHHHH
Q psy845 596 CHDTELWDALEK 607 (677)
Q Consensus 596 ~sdeeI~~Al~~ 607 (677)
.+.+++.++++.
T Consensus 96 ~~~~~v~~~l~~ 107 (219)
T 1s96_A 96 TSREAIEQVLAT 107 (219)
T ss_dssp EEHHHHHHHHTT
T ss_pred CCHHHHHHHHhc
Confidence 234566666654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=64.60 Aligned_cols=28 Identities=39% Similarity=0.512 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
+|+++|++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 7999999999999999999997666555
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00046 Score=74.18 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=34.1
Q ss_pred ccccceeeEEeCCcE--EEEEcCCCCChHHHHHHHhcCC
Q psy845 452 LVLANVSFRINHGEN--IGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 452 ~VLknISl~I~~GE~--VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+++++++.+++|++ ++|+|++||||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999 9999999999999999999864
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0013 Score=62.08 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++..+.++|++||||||+.+.|+.-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999998644
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00085 Score=69.68 Aligned_cols=25 Identities=44% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++.++||||++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999986
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0015 Score=61.23 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|..+.|.|++||||||+.+.|..-+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=61.81 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|..++|.|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0016 Score=64.49 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
-++|++++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999863
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0017 Score=59.34 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHH
Q psy845 466 NIGIVGRTGAGKSSLLVAL 484 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL 484 (677)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00042 Score=74.12 Aligned_cols=28 Identities=39% Similarity=0.453 Sum_probs=25.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSG 551 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g 551 (677)
+++.+|+||||||||+++|.++..+.++
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~~~~~ 89 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLGGRAN 89 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTTCCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 7788999999999999999999987644
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.001 Score=64.58 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=44.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
+.+|.||||||||+++|.|+.+ ++.+++......+....|+.++|++|++.+|. .|+++|+.
T Consensus 24 ~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 24 VLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp EEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred EEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 5689999999999999999996 34444322111111234788999999998884 46777763
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.002 Score=63.11 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=22.2
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++..+| ..+|+|||||||||++.+|.
T Consensus 18 ~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4445554 89999999999999999875
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.00087 Score=63.66 Aligned_cols=57 Identities=19% Similarity=0.008 Sum_probs=42.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~ 591 (677)
+.+|.||||||||+++|.+ +++|++.+|+.++... ...++++|+...+ ..++++|+.
T Consensus 6 ~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHH
Confidence 3579999999999999976 7889999988765432 2467888876443 457777763
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0048 Score=56.69 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
++.-+|+++|++|+|||||++.+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3466899999999999999999986
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.00052 Score=65.54 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSG 551 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g 551 (677)
+.+|.||||||||+++|.++.+|+.|
T Consensus 10 ~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 10 VLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp EEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred EEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 56799999999999999999977766
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0026 Score=68.46 Aligned_cols=37 Identities=38% Similarity=0.554 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc-----------CCCCCccEEEECCE
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR-----------LVELSSGQIKIDDF 500 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r-----------~y~p~~G~I~IdG~ 500 (677)
|.+++|||++|+|||||++.|.+ -.+|+.|.+.++|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 56899999999999999999998 45788898888763
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0022 Score=62.35 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
++-.++|+|++||||||+.+.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999998
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0018 Score=61.13 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|..+.++|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998744
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0006 Score=68.77 Aligned_cols=29 Identities=41% Similarity=0.480 Sum_probs=26.4
Q ss_pred cccccCCCCCchhHHHHH---Hhhhhcccccc
Q psy845 526 GIVGRTGAGKSSLLVALF---RLVELSSGQIK 554 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~---~~~~~~~g~i~ 554 (677)
+.+|.|||||||++++|. |++.||+|+++
T Consensus 31 ~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 31 TVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 567899999999999999 99999999765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0015 Score=61.42 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++..+.|+|++||||||+.+.|+.-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998543
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0026 Score=60.90 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++++||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0043 Score=56.93 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999865
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0021 Score=60.73 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|..++|+|++||||||+.+.|+.-+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0025 Score=65.86 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
+|..+.++|||||||||+.+.|+.-++ .|.+.+++-.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechHh
Confidence 467899999999999999999987542 46778876333
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.00099 Score=63.57 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=28.9
Q ss_pred cccccCCCCCchhHHHHHHhh-----------hhccccccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLV-----------ELSSGQIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~-----------~~~~g~i~~~~~~~ 560 (677)
+.+|+||||||||+++|.+.. +++.|++.++|.++
T Consensus 9 ~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 9 VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 568999999999999999983 33567888988765
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0044 Score=55.84 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0026 Score=61.58 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=35.3
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 565 (677)
..-+.+|.||||||||+++|.++.++..|++.+.|.|....+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 3446789999999999999999999999998887777655443
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.00064 Score=67.76 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=49.2
Q ss_pred ccccccCCCCCchhHHHHH---HhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccc
Q psy845 525 NGIVGRTGAGKSSLLVALF---RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~---~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~ 591 (677)
-+.+|.||||||||+++|. |+..|+.|++..++.+.. ..++..++.++|++.++ +.++.+|+.
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~ 96 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMM 96 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3567999999999999999 999999999998876532 23456677778877665 457888874
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0026 Score=60.94 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|..++|.|++||||||+.+.|..-+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.004 Score=56.51 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999987
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0028 Score=60.80 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|..++|.|++||||||+.+.|..-+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998643
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0029 Score=60.35 Aligned_cols=28 Identities=39% Similarity=0.458 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+|..|+|.|++||||||+.+.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999986654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0016 Score=62.18 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=50.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhcc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNL 590 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI 590 (677)
-+.+|.||||||||+++|.++++ .+.+++.+....+....++.++|++|++.+|.. +..+|+
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred EEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 35689999999999999999974 677888777776666668899999999998854 556665
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0042 Score=65.66 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.4
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.++++..+.+ .|+-++|.|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678877777 799999999999999999999987
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0028 Score=59.52 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++.|+|++||||||+.+.|++-+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998754
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0059 Score=63.84 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=31.4
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCC-CC------CccEEEECCE
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLV-EL------SSGQIKIDDF 500 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y-~p------~~G~I~IdG~ 500 (677)
-+++|+.+.|.||+||||||++..++.-. .| ..+.++++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 58999999999999999999998887643 33 2345666554
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0025 Score=60.33 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.6
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+++..|+|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0066 Score=57.00 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 799999999999999999987
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0034 Score=56.88 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999863
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0034 Score=58.28 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id 498 (677)
..+.++|++||||||+.+.|... ..|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999971 22555555
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0033 Score=61.43 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q psy845 467 IGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.|+||||||||||++.|+.-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987543
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0034 Score=57.05 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++|++|+|||||++.+.+-.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 79999999999999999998754
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0018 Score=71.19 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
++..++++||+||||||++..|++.+.+.+++|.+-+.|...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 578999999999999999999999999988899886666543
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0038 Score=58.58 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++..|+|.|++||||||+.+.|+.-+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997643
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0026 Score=61.75 Aligned_cols=107 Identities=12% Similarity=0.164 Sum_probs=72.7
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHH
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELW 602 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~ 602 (677)
-.-+.+|.||||||||+++|.++++|+ | ...++|+||.+.++.+..+|+..... ..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~---~~~~ 80 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPR---KGAP 80 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGG---TTSG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhccccc---CCCC
Confidence 345678999999999999999999986 4 24667777777777777666531110 0001
Q ss_pred HHHHHccchhhHhhhhcc--cCCCC--CCCCCChHHHHHHHHH-HHHhccchhh
Q psy845 603 DALEKSHLKSKVVTMRSK--LDSDV--QGDQLSLGEKQLLCLA-RALLRKTKKK 651 (677)
Q Consensus 603 ~Al~~a~l~efI~~LP~G--ldT~v--~G~~LSGGQRQRIaIA-RALLr~p~IL 651 (677)
.+.+...+.+++..++.| +++.+ +|.++|+||+||+++| |+++.+++.+
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~ 134 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYL 134 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESST
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCcee
Confidence 112222334556666666 44444 7889999999999998 9888777654
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0037 Score=56.31 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999875
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0033 Score=63.55 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|+||+||||||+.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998743
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0043 Score=56.75 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 79999999999999999998754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0037 Score=56.09 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999764
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0018 Score=67.26 Aligned_cols=104 Identities=14% Similarity=0.039 Sum_probs=48.4
Q ss_pred cccccCCCCCchhHHHHHHh-hhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCCCChHH-HH
Q psy845 526 GIVGRTGAGKSSLLVALFRL-VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGRCHDTE-LW 602 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~~sdee-I~ 602 (677)
+.+|+||||||||+++|++. ..|++| +.++|.++... . . ++.+++++|++.++ ..|+.||..++.....++ ..
T Consensus 22 ~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t-~-~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT-V-Q-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc-c-e-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 67899999999999999998 899999 88888877542 1 1 46789999987654 678999986532221111 11
Q ss_pred HHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHH
Q psy845 603 DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644 (677)
Q Consensus 603 ~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARAL 644 (677)
+..+ ++.. ..+. .-.++|||||||+++|||+
T Consensus 98 ~l~~------~l~~---~~~~--~~~~~sgg~rqrv~~ara~ 128 (301)
T 2qnr_A 98 TIIS------YIDE---QFER--YLHDESGLNRRHIIDNRVH 128 (301)
T ss_dssp THHH------HHHH---HHHH--HHHHHTSSCCTTCCCCCCC
T ss_pred HHHH------HHHH---HHHH--HHHHhCHHhhhhhhhhhhh
Confidence 1111 1111 1111 1247899999999999975
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.009 Score=55.63 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34558999999999999999999863
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.00085 Score=70.59 Aligned_cols=87 Identities=22% Similarity=0.240 Sum_probs=48.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccc---cccchhhhhHHHHhhhcccccccccccc-----cchhhccc-cCC-
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSRLSVIPQDPVLFN-----GTIRYNLD-PFG- 594 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~---~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-----gTIrENI~-~~~- 594 (677)
.+.+|.||||||||+++|.|+.+|+.|+|.. +|.+.+... +..+..+++++|.|-+.. .|+ ||+. .+.
T Consensus 176 ~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~ 253 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFPD 253 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSHH
T ss_pred EEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HHHHHHHHH
Confidence 3778999999999999999999999999998 777765432 112223899999997764 467 8883 111
Q ss_pred ----------------CCChHHHHHHHHHccchhh
Q psy845 595 ----------------RCHDTELWDALEKSHLKSK 613 (677)
Q Consensus 595 ----------------~~sdeeI~~Al~~a~l~ef 613 (677)
+..+..+.++++..++.+.
T Consensus 254 ~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 254 IREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 1123457888888888653
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0063 Score=64.83 Aligned_cols=30 Identities=37% Similarity=0.743 Sum_probs=25.1
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
++..++..+| ...|+|||||||||++.+|.
T Consensus 17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 5556666665 89999999999999999986
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0041 Score=56.05 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0045 Score=56.36 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0037 Score=58.46 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=18.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++..+.|.|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999998544
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0043 Score=58.10 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.+.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0034 Score=58.63 Aligned_cols=36 Identities=33% Similarity=0.378 Sum_probs=29.4
Q ss_pred ccccCCCCCchhHHHHHHhhhhccc--cccccccchhhh
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSG--QIKIDDFDIASV 563 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g--~i~~~~~~~~~~ 563 (677)
.+|.||||||||++++.+.+++ +| .+++++.+....
T Consensus 41 l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT 78 (149)
T ss_dssp EESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC
T ss_pred EECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH
Confidence 4689999999999999999987 57 777777665443
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0043 Score=58.18 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.=+++++|++|+|||||++.+++-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999854
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.004 Score=58.18 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=34.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh-hcccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS-RLSVIPQDP 579 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~-~I~~V~Qd~ 579 (677)
+.+|.|||||||++++|.+.. |.+.+|+-++... ..+++ ..+...|++
T Consensus 12 ~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~~--~~~~~~~~g~~~~~~ 60 (175)
T 1knq_A 12 VLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPR--RNIEKMASGEPLNDD 60 (175)
T ss_dssp EEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCCH--HHHHHHHTTCCCCHH
T ss_pred EEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccch--HHHHHhhcCcCCCcc
Confidence 457999999999999999875 7888887766532 22333 467777764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0044 Score=56.05 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999985
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0079 Score=58.02 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 799999999999999998874
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0045 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 79999999999999999998754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0049 Score=56.50 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999864
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0042 Score=56.40 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0026 Score=68.04 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=33.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhcc-ccccccccchhhhhHHHHhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSS-GQIKIDDFDIASVELETLRSRLSVIPQDPV 580 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~-g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~ 580 (677)
+.+|.||||||||+++|+++++|++ |.|...+..+ +. ..++..++++|...
T Consensus 127 ~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~---~~~~~~~~v~q~~~ 178 (356)
T 3jvv_A 127 LVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EF---VHESKKCLVNQREV 178 (356)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CS---CCCCSSSEEEEEEB
T ss_pred EEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hh---hhhccccceeeeee
Confidence 4579999999999999999999985 5554332221 11 12334556666543
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0047 Score=56.18 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999854
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0046 Score=55.98 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999998753
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0027 Score=65.53 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=34.9
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
+.+++++.+.|.||+|+||||+++.+++... .+-+.+++.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l 85 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 85 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHH
Confidence 4568899999999999999999999999763 56777776554
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0047 Score=56.67 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988764
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0055 Score=59.70 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|-.+.++|+.||||||+.+.|+.-+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998754
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0057 Score=62.00 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=28.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC-----------CCccEEEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE-----------LSSGQIKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~-----------p~~G~I~IdG~dI 502 (677)
+++++|++|||||||++.|.|-.. ...|.+.++|.++
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEE
Confidence 799999999999999999998632 2345666666543
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.009 Score=56.80 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999975
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0023 Score=68.67 Aligned_cols=111 Identities=18% Similarity=0.139 Sum_probs=71.2
Q ss_pred ccccccCCCCCchhHHHHHHhhh-hcccccccc-ccchhhhhHHHHhhhcccccccccccc-cchhhccccCCCCChHHH
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVE-LSSGQIKID-DFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGRCHDTEL 601 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~-~~~g~i~~~-~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~~sdeeI 601 (677)
.+.+|.||||||||+++|+|+.+ |+.|+|..+ |.+. ....++.+++++|++.+++ -|++|+-.. ..+.+++
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~----~tt~~~~i~~v~q~~~l~dtpgv~e~~l~--~l~~~e~ 291 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQ----HTTTAARLYHFPHGGDVIDSPGVREFGLW--HLEPEQI 291 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCCC--CCCHHHH
T ss_pred EEEECCCCccHHHHHHHHhccccccccCCccccCCCCc----cceEEEEEEEECCCCEecCcccHHHhhhc--CCCHHHH
Confidence 37789999999999999999999 999999886 6543 1345778999999999885 489997432 2344444
Q ss_pred HHHHHHccchhhHhhhhcccCC--CCCCCCCChHHHHHHHHHHHHhccch
Q psy845 602 WDALEKSHLKSKVVTMRSKLDS--DVQGDQLSLGEKQLLCLARALLRKTK 649 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT--~v~G~~LSGGQRQRIaIARALLr~p~ 649 (677)
.+ ...++.+.+ |+.. ...-.++| ||+||+++|++++....
T Consensus 292 ~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli~~~R 333 (358)
T 2rcn_A 292 TQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAIAETR 333 (358)
T ss_dssp HH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSSCHHH
T ss_pred HH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCCCHHH
Confidence 32 122333222 2211 11456899 99999999999986554
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0032 Score=60.77 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCc---cEEEECC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSS---GQIKIDD 499 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~---G~I~IdG 499 (677)
..++|+|++||||||+++.|.+.+.... |.|..|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999999998765432 4455443
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.005 Score=56.54 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999853
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0051 Score=57.14 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999875
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0048 Score=62.65 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++++||++|+|||||+|.|++-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999998764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0052 Score=55.62 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999985
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0049 Score=57.37 Aligned_cols=23 Identities=52% Similarity=0.754 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 89999999999999999998753
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0049 Score=57.77 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
--+++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0075 Score=63.73 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
-+++|+.+.|.||+||||||++..++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999988874
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0054 Score=59.26 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996644
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.005 Score=62.31 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+++++|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 799999999999999999999743
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0052 Score=58.57 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998854
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.011 Score=63.03 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=32.5
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~ 496 (677)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-....++.+.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl 78 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA 78 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 45554445899999999999999999998888765433334443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0054 Score=64.86 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=29.6
Q ss_pred ccccccccCCCCCchhHHHHHHhhh--hcccc---ccccccch
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVE--LSSGQ---IKIDDFDI 560 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~--~~~g~---i~~~~~~~ 560 (677)
+.-|.+|.||||||||+++|.++.+ |++|+ +-+||+..
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 3457789999999999999999998 56676 55555543
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0056 Score=56.67 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999853
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0047 Score=60.97 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.7
Q ss_pred cccccCCCCCchhHHHHHHhhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVE 547 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~ 547 (677)
..+|.||||||||+++|++.++
T Consensus 23 vl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 23 VLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEECCTTSSHHHHHHHHHHHCT
T ss_pred EEECcCCCCHHHHHHHHHhhCC
Confidence 4579999999999999999876
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0059 Score=59.85 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++..+.|+|++||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0059 Score=56.80 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+++++|++|+|||||++.+.+-+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 7999999999999999999987643
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0047 Score=66.42 Aligned_cols=22 Identities=50% Similarity=0.709 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++||||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0064 Score=57.94 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
++++||++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999985
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0052 Score=57.86 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.+|+|+|++||||||+.+.|..-+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999998743
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0055 Score=63.94 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.0
Q ss_pred cccccccCCCCCchhHHHHHHhh
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLV 546 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~ 546 (677)
++..+|+||||||||+.+|..+.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 67889999999999999999775
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0059 Score=56.54 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999985
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0072 Score=57.91 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+..++|+|++||||||+.+.|..-+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0058 Score=56.77 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999875
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0028 Score=60.27 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=23.8
Q ss_pred cccccCCCCCchhHHHHHHhhhh-cccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL-SSGQIK 554 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~-~~g~i~ 554 (677)
+.+|.||||||||+++|.+++++ ..|.|.
T Consensus 9 ~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 9 VLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp EEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred EEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 45799999999999999999874 556544
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0047 Score=59.37 Aligned_cols=54 Identities=7% Similarity=0.023 Sum_probs=39.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~ 579 (677)
+.+|+||||||||++.|.+...+++|.+.+.+.+............+++.+|+.
T Consensus 27 ~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 27 ALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGG
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHH
Confidence 456999999999999999999999998877666554333333333566666654
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0069 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998743
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.007 Score=56.21 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
-+.++|.|+.||||||+.+.|+.-
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0062 Score=56.42 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
..++|.|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998743
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0065 Score=55.02 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999975
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0072 Score=55.49 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7999999999999999999863
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0066 Score=58.74 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997644
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0061 Score=55.75 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+++
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999985
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0067 Score=55.20 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.=+++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44899999999999999999975
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0072 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.005 Score=60.92 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.6
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+.+|+.+.++|||||||||++.+.+
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4569999999999999999877664
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0069 Score=57.92 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
...|+|.|++||||||+.+.|+.-+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998654
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0029 Score=68.69 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=32.9
Q ss_pred cccccccCCCCCchhHHHHHH------------hhhhccccccccccchh
Q psy845 524 FNGIVGRTGAGKSSLLVALFR------------LVELSSGQIKIDDFDIA 561 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~------------~~~~~~g~i~~~~~~~~ 561 (677)
--|.+|.||||||||+++|.+ ..+|+.|.+.++|.++.
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~ 71 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFD 71 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchh
Confidence 347899999999999999999 67899999999886543
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0048 Score=63.88 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++-.|||.|||||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0064 Score=59.33 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.007 Score=64.44 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.9
Q ss_pred CCCChHHHHHH------HHHHHHhcc-chhh
Q psy845 628 DQLSLGEKQLL------CLARALLRK-TKKK 651 (677)
Q Consensus 628 ~~LSGGQRQRI------aIARALLr~-p~IL 651 (677)
.+|||||+||+ ++|||+.++ |+++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~l 309 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECI 309 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeE
Confidence 58999999987 678999999 8866
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.007 Score=55.67 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 799999999999999999975
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0071 Score=56.58 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998644
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.009 Score=55.87 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999864
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.01 Score=54.78 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++++|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 79999999999999999998
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0073 Score=55.23 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0076 Score=55.49 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0057 Score=56.58 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999984
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0075 Score=55.57 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+|+++|++|+|||||++.+++
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 799999999999999999985
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.014 Score=53.97 Aligned_cols=21 Identities=38% Similarity=0.760 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999985
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0079 Score=56.22 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|+++|++|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999754
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0059 Score=65.05 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=30.9
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE-EEECC
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ-IKIDD 499 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~-I~IdG 499 (677)
-+++|+.+.|.||+|||||||+..++.-....+|. ++++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 47899999999999999999988777654444454 45554
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0081 Score=59.94 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
-+|+|+|++|+|||||++.|++-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0033 Score=61.05 Aligned_cols=30 Identities=40% Similarity=0.472 Sum_probs=25.2
Q ss_pred cccccCCCCCchhHHHHHHhh---hhccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLV---ELSSGQIKI 555 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~---~~~~g~i~~ 555 (677)
+.+|.+||||||++++|.+.+ .+|.|+++.
T Consensus 9 ~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 9 TIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 467999999999999999887 788886443
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0041 Score=69.21 Aligned_cols=59 Identities=29% Similarity=0.352 Sum_probs=44.6
Q ss_pred cccccccCCCCCchhHHHHHHh----------------------h-h---------------hccccccccccchhhhhH
Q psy845 524 FNGIVGRTGAGKSSLLVALFRL----------------------V-E---------------LSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~----------------------~-~---------------~~~g~i~~~~~~~~~~~~ 565 (677)
++..+|+||||||||+.+|..+ + . .+.+.++++|..++..++
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l 141 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVREL 141 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHH
Confidence 6678899999999999999666 4 2 335689999999887666
Q ss_pred HHHhh-hccccccccccc
Q psy845 566 ETLRS-RLSVIPQDPVLF 582 (677)
Q Consensus 566 ~~LR~-~I~~V~Qd~~LF 582 (677)
.++-. .+.+++|+..+.
T Consensus 142 ~~~~~~li~i~~q~~~~~ 159 (517)
T 4ad8_A 142 QEWAQGRLTIHWQHSAVS 159 (517)
T ss_dssp HHHHTTTEEEESGGGGGT
T ss_pred HHHhhhheEEeCCchHHh
Confidence 66544 457788886554
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.013 Score=54.96 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhc------CCCCCcc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFR------LVELSSG 493 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r------~y~p~~G 493 (677)
-+|+++|++|+|||||++.+++ -|.|+-|
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 3899999999999999999987 3455555
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0082 Score=55.65 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999753
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0089 Score=56.51 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0088 Score=56.39 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+|+++|++|+|||||++.+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999975
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0032 Score=69.00 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=39.9
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDD 499 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG 499 (677)
+.|+++..-+++|+.+.|.||+|+||||++..+++-..+.+| .+.+-+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 367888877999999999999999999999999987766555 566544
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.007 Score=62.98 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=27.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccc-cccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~ 560 (677)
+.+|.|||||||++..|.+.+++++| .+.+-+.|.
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 35689999999999999999999999 444444443
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0086 Score=56.13 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r 486 (677)
=+++++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999986
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0092 Score=55.95 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0046 Score=72.84 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=31.4
Q ss_pred ccccccCCCCCchhHHHHHHhhhh-ccccccccccchhhhhHHHHhhhccccccccccc-ccchhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~-~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
-+.+|.||||||||++++.++..+ +.|. .+ +. -+..++++.| +| .-++.||+..
T Consensus 610 ~~ItGpNGsGKSTlLr~iagl~~~~q~G~-~v--------pa--~~~~i~~~~~---i~~~~~~~d~l~~ 665 (800)
T 1wb9_A 610 LIITGPNMGGKSTYMRQTALIALMAYIGS-YV--------PA--QKVEIGPIDR---IFTRVGAADDLAS 665 (800)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHTTTC-CB--------SS--SEEEECCCCE---EEEEEC-------
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHhcCc-cc--------ch--hcccceeHHH---HHhhCCHHHHHHh
Confidence 356799999999999999998654 3342 11 10 1346788877 45 4477888854
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0062 Score=63.89 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.4
Q ss_pred cccccccccCCCCCchhHHHHHHhhhh
Q psy845 522 VLFNGIVGRTGAGKSSLLVALFRLVEL 548 (677)
Q Consensus 522 ~lf~~~~~~n~~~~~~~~~~~~~~~~~ 548 (677)
...-|.+|.||||||||+++|.|+.+|
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 344577899999999999999999877
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0069 Score=61.52 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccE-EEECCEec
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQ-IKIDDFDI 502 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~-I~IdG~dI 502 (677)
...+.++||+|+||||+++.+++...+.+|. +.+|..+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 3589999999999999999999998777774 45554333
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0045 Score=59.30 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
--+|+++|++|+|||||++.+.+-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 348999999999999999999873
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0099 Score=59.47 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++-+++|.||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998644
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0097 Score=59.54 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-+|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998743
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0097 Score=54.90 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999998874
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0064 Score=63.88 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.7
Q ss_pred cccccCCCCCchhHHHHHHhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLV 546 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~ 546 (677)
+.+|.||||||||+++|+|++
T Consensus 130 aIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 130 AFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEECSSSSSHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHhhhc
Confidence 568999999999999999998
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0096 Score=55.65 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999874
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.01 Score=57.92 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
...+||+|++||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.01 Score=60.91 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-+++++|++|+|||||++.|+|-.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999953
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.015 Score=57.15 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|++||++|+|||||++.+.+-
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=62.95 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++..+.|+||||||||||...|+.-+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356789999999999999999999866
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0094 Score=56.26 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+|+++|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 799999999999999999975
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=55.93 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0065 Score=58.49 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=70.0
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc---chhhccc--cC--CCCC
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG---TIRYNLD--PF--GRCH 597 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg---TIrENI~--~~--~~~s 597 (677)
-+.+|.||||||||+++|.++++| ++++++||+++++. |+++|.. +. +...
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFD 66 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCCChhhhh
Confidence 467899999999999999999875 58999999999854 5666653 21 1233
Q ss_pred hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHH----HHHHHHHHHHhccchhh
Q psy845 598 DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE----KQLLCLARALLRKTKKK 651 (677)
Q Consensus 598 deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQ----RQRIaIARALLr~p~IL 651 (677)
.+++.++++..++.+.+.. .+.++|+|| +||+++||+++.+|+++
T Consensus 67 ~~~~~~~l~~~~~~~~~~~---------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll 115 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEM---------PVYDFRAYTRSPRRTPVRPAPVVILEGILV 115 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEE---------CCEETTTTEECSSCEEECCCSEEEEESTTT
T ss_pred HHHHHHHHHHHHcCCCcCC---------CcccCcccCCCCCeEEeCCCcEEEEeehhh
Confidence 4567777777766554432 345677775 57999999998887644
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.01 Score=55.62 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+|+++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999974
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=55.92 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|+++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.01 Score=56.96 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0055 Score=58.95 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.-+|+++|++|+|||||++.|++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999999864
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=57.59 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
-+|+++|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999874
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.98 E-value=0.012 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+.=+++++|++|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999853
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.01 Score=56.49 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
=+++++|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 38999999999999999999874
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0077 Score=56.71 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=23.7
Q ss_pred ccccCCCCCchhHHHHHHhhhhcccc
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
..|.||+|||||++++.+...|++|.
T Consensus 43 l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 43 FVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp ECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999884
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.01 Score=55.68 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|+++|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=59.29 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++..|.++|++||||||+.+.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=61.21 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.0028 Score=60.40 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=19.6
Q ss_pred cccccCCCCCchhHHHHHHhh-----hhccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLV-----ELSSGQIKI 555 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~-----~~~~g~i~~ 555 (677)
+.+|+||||||||+++|.|.. .|+.|..+.
T Consensus 30 ~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 30 AFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp EEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred EEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 568999999999999999988 788886554
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.021 Score=61.92 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=30.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
.-++++.+.++|++||||||+.+.|+.-+ |-..+|.-++
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D~~ 292 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRDTL 292 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGGGS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccchH
Confidence 34567899999999999999999998743 5556665444
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=55.39 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999999853
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.011 Score=55.57 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|+++|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 7999999999999999999864
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0069 Score=67.32 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=31.0
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
..++++++++++| +.|+||+|+||||+++.+++-.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 4788888888888 8999999999999999999854
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=54.76 Aligned_cols=22 Identities=45% Similarity=0.631 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999763
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=55.85 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
=+|+++|++|+|||||++.+++-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999999843
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44899999999999999999984
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.0078 Score=61.40 Aligned_cols=111 Identities=10% Similarity=-0.031 Sum_probs=65.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccc-cccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDA 604 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~A 604 (677)
+.+|+||||||||++.|.+..+|++| .+.+.+.+ ++.+++++++..+.|+..+ +..+|+..+ ..++++..++
T Consensus 39 ~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~~l~~~-~~~~~~~~~~ 111 (296)
T 1cr0_A 39 MVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSDSLKRE-IIENGKFDQW 111 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCHHHHHH-HHHHTHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhccccccC-CCCHHHHHHH
Confidence 45799999999999999999999988 66443332 2455677776666655432 223344311 1222333332
Q ss_pred HHHccchhhHhhhhcccCCCCCCCCCChHH-HHHHHHHHHHhccchhh
Q psy845 605 LEKSHLKSKVVTMRSKLDSDVQGDQLSLGE-KQLLCLARALLRKTKKK 651 (677)
Q Consensus 605 l~~a~l~efI~~LP~GldT~v~G~~LSGGQ-RQRIaIARALLr~p~IL 651 (677)
.+.. +...+-+++. ...++|.+| +||+. |+|+..+|+++
T Consensus 112 ~~~~-----l~~~~l~i~~--~~~~~~~~~l~~~~~-a~~~~~~p~ll 151 (296)
T 1cr0_A 112 FDEL-----FGNDTFHLYD--SFAEAETDRLLAKLA-YMRSGLGCDVI 151 (296)
T ss_dssp HHHH-----HSSSCEEEEC--CCCSCCHHHHHHHHH-HHHHTTCCSEE
T ss_pred HHHH-----hccCCEEEEC--CCCCCCHHHHHHHHH-HHHHhcCCCEE
Confidence 2221 1111111111 124688998 77777 99998888754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.013 Score=55.89 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7999999999999999999853
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.015 Score=53.37 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.+..+.|+||+|+||||+++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998764
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.012 Score=54.97 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999986
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.012 Score=60.29 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
...|+|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.013 Score=57.13 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|-.+.+.|+.||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.013 Score=55.12 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999999874
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.013 Score=55.27 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
=+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999753
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.0079 Score=63.88 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=58.2
Q ss_pred cccccCCCCCchhHHHHHHhh--hhcc----cc-ccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCCh
Q psy845 526 GIVGRTGAGKSSLLVALFRLV--ELSS----GQ-IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHD 598 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~--~~~~----g~-i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sd 598 (677)
+.+|+||||||||+..+.+.+ +|++ |. +++|+++.. .++++++++|++.++..++.||+.+....+.
T Consensus 135 ~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 135 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred EEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 357999999999999999999 7887 57 999998852 3578899999999998899999976443333
Q ss_pred HHHHHHHH
Q psy845 599 TELWDALE 606 (677)
Q Consensus 599 eeI~~Al~ 606 (677)
++..+.++
T Consensus 209 ~~~~~~l~ 216 (349)
T 1pzn_A 209 NHQMLLVQ 216 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=59.99 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+++||++|||||||++.|+|-.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999865
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.015 Score=56.01 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELS 491 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~ 491 (677)
++..+.|.||+|+||||+++.+++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68899999999999999999998866433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 677 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-33 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-27 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-27 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-26 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-18 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-16 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-12 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-16 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-13 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-15 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-14 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-14 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-13 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-13 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-12 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-13 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-10 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-13 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-11 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-12 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-07 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-12 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-12 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-12 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-08 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-11 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-07 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-11 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-11 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-10 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-09 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-09 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-08 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-05 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 5e-04 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 125 bits (315), Expect = 7e-33
Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 90/275 (32%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
+QG I +VS +Y DN +L ++
Sbjct: 13 KQGRIDIDHVSFQYNDNEAPILKDI----------------------------------- 37
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552
+ I E VG +G GKS+L+ + R +++SGQ
Sbjct: 38 ------NLSIEKGE-----------------TVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL-DPFGRCHDTELWDALEKSHLK 611
I ID +I +LR+++ ++ QD +LF+ T++ N+ D E+ +A + ++
Sbjct: 75 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH 134
Query: 612 SKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK-------------------- 649
++ + D++V +G +LS G+KQ L +AR L
Sbjct: 135 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194
Query: 650 ------KKKKSGVNIT---RPVTSCDKVLVMDNGQ 675
K ++ + + +T DK++V++NG
Sbjct: 195 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGH 229
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 110 bits (276), Expect = 1e-27
Identities = 50/275 (18%), Positives = 102/275 (37%), Gaps = 91/275 (33%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
G ++F+NV+ Y L N+
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNI------------------------------------ 34
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553
+ I + + +VGR+G+GKS++ + R ++ G I
Sbjct: 35 -----NLKIPAGK-----------------TVALVGRSGSGKSTIASLITRFYDIDEGHI 72
Query: 554 KIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN--LDPFGRCHDTELWDALEKSHLK 611
+D D+ L +LR++++++ Q+ LFN T+ N ++ +A ++
Sbjct: 73 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM 132
Query: 612 SKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK-------------------- 649
+ M + LD+ + G LS G++Q + +ARALLR +
Sbjct: 133 DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 192
Query: 650 ------KKKKSGVNIT-RP--VTSCDKVLVMDNGQ 675
+K ++ + I R + D+++V+++G
Sbjct: 193 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGI 227
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 107 bits (269), Expect = 7e-27
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 33/185 (17%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
G +G GKS++ L R + ++G+I ID I ++ LE RS++ + QD +
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89
Query: 584 GTIRYNLD--PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLC 639
GTIR NL G D +LW L+ + +S V M +L+++V +G ++S G++Q L
Sbjct: 90 GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149
Query: 640 LARALLRKTK--------------------------KKKKSGVNIT---RPVTSCDKVLV 670
+ARA LR K K ++ + I + DK+
Sbjct: 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYF 209
Query: 671 MDNGQ 675
++ GQ
Sbjct: 210 IEKGQ 214
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 96.9 bits (241), Expect = 3e-23
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ ++V Y D+ +L ++SF I G +G GKS++ L R + ++G+I
Sbjct: 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNG 526
ID I ++ LE RS++ + QD + G
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAG 90
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (265), Expect = 2e-26
Identities = 53/255 (20%), Positives = 97/255 (38%), Gaps = 36/255 (14%)
Query: 428 LADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486
L +G ++F++VS Y + LVL ++F + GE +VG G+GKS++ L
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 487 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLV 546
L + + GQ+ +D + E L +++ + Q+P +F + +
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQEN--------------I 108
Query: 547 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALE 606
Q + A+ S +S +PQ L G+ L AL
Sbjct: 109 AYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSG-GQRQAVALARAL- 166
Query: 607 KSHLKSKVVTMR---SKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKKSGVNIT---R 660
K V+ + S LD++ Q + + L ++ +S + IT
Sbjct: 167 --IRKPCVLILDDATSALDANSQLQ-----------VEQLLYESPERYSRSVLLITQHLS 213
Query: 661 PVTSCDKVLVMDNGQ 675
V D +L ++ G
Sbjct: 214 LVEQADHILFLEGGA 228
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 103 bits (257), Expect = 2e-25
Identities = 37/90 (41%), Positives = 56/90 (62%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+N+ RY+ + P++L N++ I GE IGIVGR+G+GKS+L + R +GQ+
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNG 526
ID D+A + LR ++ V+ QD VL N
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNR 91
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.4 bits (237), Expect = 2e-22
Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 45/184 (24%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
I G TG+GK+SLL+ + +E S G IK R+S Q +
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMP 110
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
GTI+ N+ + ++ L+ + + ++ + G LS G++ + LA
Sbjct: 111 GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 642 RALLRKT---------------------------KKKKKSGVNIT---RPVTSCDKVLVM 671
RA+ + K+ + +T + DK+L++
Sbjct: 171 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 230
Query: 672 DNGQ 675
G
Sbjct: 231 HQGS 234
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.2 bits (208), Expect = 1e-18
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 412 EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVG 471
EG G + + Q + + F ++ L VL N++ I GE + I G
Sbjct: 14 EGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITG 69
Query: 472 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
TG+GK+SLL+ + +E S G IK R+S Q + G +
Sbjct: 70 STGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTI 113
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 76.4 bits (188), Expect = 4e-16
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ ++ RY + VL VS + G+ I I+G +G+GKS+ L + L + S G I
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 497 IDDFDIASV-------------ELETLRSRLSVIPQDPVLFN 525
++ +I V +L LR+RL+++ Q L++
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 102
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 66.0 bits (161), Expect = 1e-12
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV-------------ELETLRS 570
I+G +G+GKS+ L + L + S G I ++ +I V +L LR+
Sbjct: 30 VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89
Query: 571 RLSVIPQDPVLFNG--TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD 628
RL+++ Q L++ + ++ + DA E++ V + +
Sbjct: 90 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ-GKYPV 148
Query: 629 QLSLGEKQLLCLARALLRKTK 649
LS G++Q + +ARAL +
Sbjct: 149 HLSGGQQQRVSIARALAMEPD 169
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 75.3 bits (185), Expect = 7e-16
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
IK KNV+ Y+ ++ A NV+ I GE + I+G +G+GKS++L + L + + G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 495 IKIDDFDIASVELETL----RSRLSVIPQDPVLF 524
+ ID+ ++ + L R ++ + Q L
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 66.4 bits (162), Expect = 7e-13
Identities = 33/191 (17%), Positives = 78/191 (40%), Gaps = 40/191 (20%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL----RSRLSVIPQDP 579
F I+G +G+GKS++L + L + + G++ ID+ ++ + L R ++ + Q
Sbjct: 33 FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 580 VLFNG-TIRYNLD---PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
L T N++ F + +++ K+ + + ++ + +QLS G++
Sbjct: 93 NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF-ANHKPNQLSGGQQ 151
Query: 636 QLLCLARALLRK----------------------------TKKKKKSGVNIT---RPVTS 664
Q + +ARAL ++ K+ V +T
Sbjct: 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF 211
Query: 665 CDKVLVMDNGQ 675
++++ + +G+
Sbjct: 212 GERIIYLKDGE 222
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 72.6 bits (178), Expect = 6e-15
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
IK N++ + + A NVS + G+ G++G +GAGKS+L+ + L + G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 495 IKIDDFDIASV---ELETLRSRLSVIPQDPVLFN 525
+ +D ++ ++ EL R ++ +I Q L +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 95
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 70.3 bits (172), Expect = 4e-14
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPV 580
G++G +GAGKS+L+ + L + G + +D ++ ++ EL R ++ +I Q
Sbjct: 33 IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 581 LF-NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLC 639
L + T+ N+ +T + + +V + K DS LS G+KQ +
Sbjct: 93 LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVA 150
Query: 640 LARALLRKTK 649
+ARAL K
Sbjct: 151 IARALASNPK 160
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 69.8 bits (171), Expect = 5e-14
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K +N++ R+ + + ++ I GE + ++G +G GK++ L + L E + G+I
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
D D+ L +S++ Q ++
Sbjct: 65 FGDRDVT--YLPPKDRNISMVFQSYAVW 90
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 68.6 bits (168), Expect = 1e-13
Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F ++G +G GK++ L + L E + G+I D D+ L +S++ Q ++
Sbjct: 34 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVT--YLPPKDRNISMVFQSYAVWP 91
Query: 584 G-TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
T+ N+ + + ++ ++++ + L+ QLS G++Q + +AR
Sbjct: 92 HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVAR 149
Query: 643 ALLRKTK 649
A++ +
Sbjct: 150 AIVVEPD 156
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 67.7 bits (165), Expect = 2e-13
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ ++V+ R L +S + GE + +VG GAGKS+LL + + G I+
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQ 56
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+ + L + + Q
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPP 84
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 65.7 bits (160), Expect = 1e-12
Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 13/126 (10%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLFNG 584
+VG GAGKS+LL + + G I+ + + L + + Q F
Sbjct: 29 HLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 87
Query: 585 TIRYNLDPFGRCHDTELW--DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
+ + L D L K+ +QLS GE Q + LA
Sbjct: 88 PVWHYLTLHQHDKTRTELLNDVAGALALDDKL---------GRSTNQLSGGEWQRVRLAA 138
Query: 643 ALLRKT 648
+L+ T
Sbjct: 139 VVLQIT 144
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 67.3 bits (164), Expect = 5e-13
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N+ + + L VS +N G+ I+G G+GKS+L+ + ++ G++
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 497 IDDFDIASVEL-ETLRSRLSVIPQDP-------VLFNGIVGRTGAGKSSLLVALFRLVEL 548
++ DI + E E + Q P VL N ++G G+S L ++
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 549 SSGQIK 554
++
Sbjct: 123 KEEEMV 128
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 58.8 bits (142), Expect = 3e-10
Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 44/194 (22%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLF-N 583
I+G G+GKS+L+ + ++ G++ ++ DI + E E + Q P
Sbjct: 34 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDS-----------DVQGDQLSL 632
T+ NL C ++L K M K D + +LS
Sbjct: 94 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 153
Query: 633 GEKQLLCLARAL---------------------------LRKTKKKKKSGVNITRPV--- 662
G+ +L+ + RAL + + K K + + I +
Sbjct: 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 213
Query: 663 -TSCDKVLVMDNGQ 675
D + VM NGQ
Sbjct: 214 LNYIDHLYVMFNGQ 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 66.6 bits (162), Expect = 6e-13
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G + K++ R +L +SF I GE G++G GAGK++ L + L++ SSG
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
+ + ++ E +R +S +P++ +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYR 88
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 61.9 bits (150), Expect = 3e-11
Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 35/182 (19%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NG 584
G++G GAGK++ L + L++ SSG + + ++ E +R +S +P++ + N
Sbjct: 32 GLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNM 90
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
L + + + E +++ + K+ V S G + L +ARAL
Sbjct: 91 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV--STYSKGMVRKLLIARAL 148
Query: 645 ---------------------------LRKTKKKKKSGVNITRPVTS----CDKVLVMDN 673
L++ ++ + + + + CD++ ++ N
Sbjct: 149 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHN 208
Query: 674 GQ 675
G
Sbjct: 209 GT 210
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 65.5 bits (159), Expect = 1e-12
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I KNVS ++ + L NV+ I +GE GI+G +GAGK++ + + L S+G++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 497 IDDFDIASVELETLRSR---LSVIPQDPVLF 524
DD +AS + + ++ Q L+
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 50.9 bits (121), Expect = 1e-07
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR---LSVIPQDPV 580
GI+G +GAGK++ + + L S+G++ DD +AS + + ++ Q
Sbjct: 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Query: 581 LFNG-TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLC 639
L+ T N+ + ++ +K++ + L+ +LS ++Q +
Sbjct: 93 LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP--RELSGAQQQRVA 150
Query: 640 LARALLRKTKK 650
LARAL++
Sbjct: 151 LARALVKDPSL 161
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 64.6 bits (157), Expect = 3e-12
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +NV+ + + V +++ I+ GE + VG +G GKS+LL + L ++SG +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
I + + + + ++ Q L+
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALY 84
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 63.4 bits (154), Expect = 8e-12
Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F VG +G GKS+LL + L ++SG + I + + + + ++ Q L+
Sbjct: 28 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAERGVGMVFQSYALYP 85
Query: 584 GTIRY-NLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
N+ + + ++ + ++V+ + LD LS G++Q + + R
Sbjct: 86 HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSGGQRQRVAIGR 143
Query: 643 ALLRKTK 649
L+ +
Sbjct: 144 TLVAEPS 150
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 63.4 bits (154), Expect = 4e-12
Identities = 17/94 (18%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +++S+ Y VL ++ I G + G G GK++LL + ++ G+I
Sbjct: 3 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530
+ I ++ ++ +P++ ++ I
Sbjct: 60 YNGVPITK-----VKGKIFFLPEEIIVPRKISVE 88
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 53.0 bits (127), Expect = 1e-08
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 21/132 (15%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
G G GK++LL + ++ G+I + I ++ ++ +P++ ++
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFFLPEEIIVPR 83
Query: 584 G-TIRYNLDPFGRCH-----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
++ L + E+ DALE + LD + +LS G +
Sbjct: 84 KISVEDYLKAVASLYGVKVNKNEIMDALESVEV----------LDLKKKLGELSQGTIRR 133
Query: 638 LCLARALLRKTK 649
+ LA LL +
Sbjct: 134 VQLASTLLVNAE 145
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 61.6 bits (149), Expect = 3e-11
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +++S ++++ L N+S ++ GE I+G TGAGK+ L + SG+I
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+D D+ +L + ++ + Q+ LF
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLF 84
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 49.3 bits (117), Expect = 4e-07
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
+ I+G TGAGK+ L + SG+I +D D+ +L + ++ + Q+ LF
Sbjct: 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNYSLFP 85
Query: 584 G-----TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
+ + + + D ++ D LS GE+Q +
Sbjct: 86 HMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH---------LLDRNPLTLSGGEQQRV 136
Query: 639 CLARALLRKTKK 650
LARAL+ K
Sbjct: 137 ALARALVTNPKI 148
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 61.9 bits (150), Expect = 3e-11
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +V + + + +S + GE + ++G +G GK++ L + L E S GQI
Sbjct: 4 VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 497 IDDFDIASVELETLR----SRLSVIPQDPVLF 524
I D +A E ++++ Q L+
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 60.7 bits (147), Expect = 7e-11
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR----SRLSVIPQDP 579
F ++G +G GK++ L + L E S GQI I D +A E ++++ Q
Sbjct: 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 580 VLFNGTIRY-NLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
L+ Y N+ + + ++ ++++ + L+ +LS G++Q +
Sbjct: 91 ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP--RELSGGQRQRV 148
Query: 639 CLARALLRKTK 649
L RA++RK +
Sbjct: 149 ALGRAIVRKPQ 159
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.0 bits (145), Expect = 1e-10
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
+ ++G TGAGKS L + +V+ G+++++ DI L R + +PQD LF
Sbjct: 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFP 83
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
Y +G + E + + ++ + + LD +LS GE+Q + LARA
Sbjct: 84 HLSVYRNIAYGLRN-VERVERDRRVREMAEKLGIAHLLDRKPA--RLSGGERQRVALARA 140
Query: 644 LLRKTKK 650
L+ + +
Sbjct: 141 LVIQPRL 147
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 56.9 bits (137), Expect = 1e-09
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514
NV F + + ++G TGAGKS L + +V+ G+++++ DI L R +
Sbjct: 16 LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72
Query: 515 SVIPQDPVLF 524
+PQD LF
Sbjct: 73 GFVPQDYALF 82
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 56.1 bits (135), Expect = 2e-09
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV-IPQDPVLF-N 583
++G GAGK++ L A+ LV G+I + DI + + +P+ +F
Sbjct: 36 TLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
T+ NL + + + S ++ +L G LS GE+Q+L + RA
Sbjct: 96 LTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ--LGGTLSGGEQQMLAIGRA 153
Query: 644 LLRKTK 649
L+ + K
Sbjct: 154 LMSRPK 159
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 54.1 bits (130), Expect = 1e-08
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +++ + Y + + ++ G+ + ++G GAGK++ L A+ LV G+I
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 497 IDDF 500
+
Sbjct: 65 FNGQ 68
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 50.0 bits (118), Expect = 1e-07
Identities = 12/153 (7%), Positives = 41/153 (26%), Gaps = 3/153 (1%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
I G G GK++L+ + + + ++ + T ++ + + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL 645
+ + ++ L L+ + + D++ E +
Sbjct: 64 FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123
Query: 646 RKTKKKKKSGVNIT---RPVTSCDKVLVMDNGQ 675
+ + V ++ +
Sbjct: 124 QIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV 156
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 43.1 bits (100), Expect = 3e-05
Identities = 8/59 (13%), Positives = 22/59 (37%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
I I G G GK++L+ + + + ++ + T ++ + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 8/81 (9%), Positives = 22/81 (27%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+ G G GK++L+ +++ S + + + + + +
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 586 IRYNLDPFGRCHDTELWDALE 606
C + L
Sbjct: 65 GLEPPPGKRECRVGQYVVDLT 85
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 6/60 (10%), Positives = 21/60 (35%)
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
++ + G G GK++L+ +++ S + + + + + +
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.86 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.86 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.25 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.99 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 98.4 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 98.3 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 98.25 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 98.22 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 98.22 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 98.21 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 98.2 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 98.18 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 98.18 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 98.18 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 98.17 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 98.16 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 98.16 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 98.13 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 98.13 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 98.13 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 98.11 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 98.09 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.74 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.49 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.41 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.38 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.27 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.24 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.22 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.2 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.18 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.02 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.93 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.88 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.88 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.88 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.86 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.85 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.83 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.81 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.8 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.79 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.77 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.77 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.71 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.7 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.7 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.68 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.56 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.52 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.48 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.43 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.4 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.38 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.38 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.38 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.38 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.33 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.31 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.3 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.29 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.29 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.28 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.28 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.27 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.26 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.25 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.22 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.21 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.14 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.12 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.1 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.08 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.06 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.03 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.0 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.99 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.97 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.97 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.96 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.93 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.88 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.85 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.84 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.8 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.79 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.77 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.76 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.75 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.74 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.72 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.69 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.65 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.64 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.63 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.62 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.61 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.6 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.56 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.48 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.48 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.43 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.41 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.33 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.31 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.28 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.24 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.23 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.21 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.2 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.19 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.19 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.09 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.06 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.05 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.02 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.0 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.94 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.84 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.8 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.79 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.77 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.73 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.72 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.7 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.67 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.58 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.58 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.58 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.57 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.49 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.49 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.48 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.32 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.3 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.3 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.3 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.28 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.26 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.23 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.22 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.18 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.1 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.08 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.05 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.03 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.97 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.95 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.91 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.88 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.84 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 93.81 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.8 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.75 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.73 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.72 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.71 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.71 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.65 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.6 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.59 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.56 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.53 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.49 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.41 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.4 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.37 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.36 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.33 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 93.31 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.26 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 93.25 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.24 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.24 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.21 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.21 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.07 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 92.94 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.93 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.92 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.88 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.86 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.76 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.76 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.75 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.67 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.56 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.56 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.55 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.52 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.28 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.21 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.07 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.71 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.64 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.62 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.61 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.58 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 91.56 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 91.56 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.56 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.51 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.45 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 91.23 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.17 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.17 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 91.08 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 91.07 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 90.82 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 90.81 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.79 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.79 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.69 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.59 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.37 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.34 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.2 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.12 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.95 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 89.85 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.39 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.35 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 89.32 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.84 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.78 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 88.76 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 88.46 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.28 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.17 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.82 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 87.61 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.57 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 87.29 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 87.21 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 87.2 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.89 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 86.81 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 86.76 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 86.75 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 86.53 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.52 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 86.33 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.3 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.29 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 86.18 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.17 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 85.95 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 85.73 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 85.42 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.32 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 85.23 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.19 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.02 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 84.91 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 84.71 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 84.5 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.5 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 84.27 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 84.27 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 83.91 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.89 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.86 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 83.83 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.78 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 83.26 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 83.15 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 83.02 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 82.87 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 82.81 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 82.81 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 82.52 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 82.12 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 81.96 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 81.66 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 81.38 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 81.02 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 80.78 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 80.59 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 80.51 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 80.37 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 80.32 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 80.28 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 80.08 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 80.07 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 80.05 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-52 Score=424.22 Aligned_cols=184 Identities=33% Similarity=0.505 Sum_probs=172.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
+|+|+||||+|+++.++||+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~---------- 70 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA---------- 70 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS----------
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEeccc----------
Confidence 4899999999987777899999999999999999999999999999999999999999999999999998
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG- 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~- 594 (677)
+.+++|++|+||||||.+|++||+|||.++.
T Consensus 71 ------------------------------------------------~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~ 102 (241)
T d2pmka1 71 ------------------------------------------------DPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 102 (241)
T ss_dssp ------------------------------------------------CHHHHHHHEEEECSSCCCTTSBHHHHHCTTST
T ss_pred ------------------------------------------------chhhhhceEEEEecccccCCccccccccccCc
Confidence 8889999999999999999999999999765
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..++++++++++.+++++++..+|+|++|.+ +|.+||||||||+|||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l 182 (241)
T d2pmka1 103 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 182 (241)
T ss_dssp TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHH
Confidence 5789999999999999999999999999999 79999999999999999999999977
Q ss_pred --cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 --KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..+++| | +++++.||||+||++|+|+
T Consensus 183 ~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv 216 (241)
T d2pmka1 183 HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 216 (241)
T ss_dssp HHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEE
T ss_pred HHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEE
Confidence 135677 2 5678899999999999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.7e-52 Score=428.65 Aligned_cols=187 Identities=30% Similarity=0.511 Sum_probs=174.4
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.+|+|+|+||+|+|+++.++||+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~------- 85 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF------- 85 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS-------
T ss_pred CCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccC-------
Confidence 4688999999999988777899999999999999999999999999999999999999999999999999998
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+.+++|++++||||++.+|++||+|||.+
T Consensus 86 ---------------------------------------------------~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~ 114 (255)
T d2hyda1 86 ---------------------------------------------------LTGSLRNQIGLVQQDNILFSDTVKENILL 114 (255)
T ss_dssp ---------------------------------------------------CHHHHHHTEEEECSSCCCCSSBHHHHHGG
T ss_pred ---------------------------------------------------CHHHhhheeeeeeccccCCCCCHHHHHhc
Confidence 88999999999999999999999999987
Q ss_pred CC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 593 FG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 593 ~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
+. +.+++++++|++.+++++++.++|+|+||.+ +|.+||||||||+||||||+++|+++
T Consensus 115 g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~ 194 (255)
T d2hyda1 115 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194 (255)
T ss_dssp GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH
T ss_pred cCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 64 5789999999999999999999999999999 79999999999999999999999977
Q ss_pred -----cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 -----KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..+++| | +++++.||||+||++|+|+
T Consensus 195 ~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv 231 (255)
T d2hyda1 195 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIV 231 (255)
T ss_dssp HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEE
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 135677 2 5678889999999999985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-51 Score=417.90 Aligned_cols=187 Identities=26% Similarity=0.456 Sum_probs=173.4
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
..|+|+|+||+|+|+++++++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~------- 82 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY------- 82 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTB-------
T ss_pred CceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchh-------
Confidence 4578999999999988767899999999999999999999999999999999999999999999999999998
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+.+++|++++||||+|.+|++|+++|+.+
T Consensus 83 ---------------------------------------------------~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~ 111 (253)
T d3b60a1 83 ---------------------------------------------------TLASLRNQVALVSQNVHLFNDTVANNIAY 111 (253)
T ss_dssp ---------------------------------------------------CHHHHHHTEEEECSSCCCCSSBHHHHHHT
T ss_pred ---------------------------------------------------hhhhhhheEEEEeeccccCCcchhhhhhh
Confidence 88899999999999999999999999976
Q ss_pred CC--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 593 FG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 593 ~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
+. ..+++++++|++.++++++++++|+|+||.+ +|.+||||||||+||||||+++|+++
T Consensus 112 ~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i 191 (253)
T d3b60a1 112 ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191 (253)
T ss_dssp TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHH
T ss_pred cCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHH
Confidence 53 5788999999999999999999999999999 79999999999999999999999977
Q ss_pred ------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|+ +++++.||||+||++|+|+
T Consensus 192 ~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv 229 (253)
T d3b60a1 192 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 229 (253)
T ss_dssp HHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEE
T ss_pred HHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEE
Confidence 1356772 5677889999999999985
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-50 Score=410.80 Aligned_cols=187 Identities=28% Similarity=0.415 Sum_probs=170.8
Q ss_pred CCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhh
Q psy845 433 RQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
.+|.|+|+||||+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~------ 81 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQY------ 81 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB------
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchh------
Confidence 46789999999999864 34699999999999999999999999999999999999999999999999999998
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
+.+++|++++||||+|.+|++||+||+.
T Consensus 82 ----------------------------------------------------~~~~~r~~i~~v~Q~~~lf~~tv~eni~ 109 (251)
T d1jj7a_ 82 ----------------------------------------------------EHRYLHRQVAAVGQEPQVFGRSLQENIA 109 (251)
T ss_dssp ----------------------------------------------------CHHHHHHHEEEECSSCCCCSSBHHHHHH
T ss_pred ----------------------------------------------------hhHHHHHHhhhccccccccCcchhhhhh
Confidence 8889999999999999999999999998
Q ss_pred cCC--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 592 PFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 592 ~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
++. +.+++++.+++++++++++++++|+|++|.+ +|.+||||||||+|||||++++|+++
T Consensus 110 ~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~ 189 (251)
T d1jj7a_ 110 YGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 189 (251)
T ss_dssp CSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHH
Confidence 752 5678889999999999999999999999999 79999999999999999999999976
Q ss_pred ---------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
...++|+ +++++.||||+||++|+|+
T Consensus 190 i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv 230 (251)
T d1jj7a_ 190 VEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIR 230 (251)
T ss_dssp HHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEE
T ss_pred HHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 1236672 4567889999999999985
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1e-50 Score=412.50 Aligned_cols=182 Identities=31% Similarity=0.534 Sum_probs=167.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|++|||||+|+++ ++||+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~----------- 69 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI----------- 69 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTT-----------
T ss_pred EEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccc-----------
Confidence 7899999999865 4699999999999999999999999999999999999999999999999999998
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC--C
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF--G 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~--~ 594 (677)
+.+++|++||||||||.+|++||+||+.++ .
T Consensus 70 -----------------------------------------------~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~ 102 (242)
T d1mv5a_ 70 -----------------------------------------------SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG 102 (242)
T ss_dssp -----------------------------------------------SCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS
T ss_pred -----------------------------------------------cHHHHHhheEEEccccccCCcchhhheeccccc
Confidence 777899999999999999999999999764 3
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..++++++++++.+++.+++..+|+|++|.+ +|.+||||||||+|||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l 182 (242)
T d1mv5a_ 103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182 (242)
T ss_dssp CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH
T ss_pred ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHH
Confidence 5788999999999999999999999999999 79999999999999999999999977
Q ss_pred --cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|+ +++++.||||+||++|+|+
T Consensus 183 ~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv 216 (242)
T d1mv5a_ 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216 (242)
T ss_dssp HHHHTTSEEEEECCSHHHHHHCSEEEEEETTEEC
T ss_pred HHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEE
Confidence 1357772 4567789999999999986
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-41 Score=350.21 Aligned_cols=168 Identities=26% Similarity=0.379 Sum_probs=146.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+.|+|+|++|.+ ++||+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 37 ~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--------------- 97 (281)
T d1r0wa_ 37 NNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--------------- 97 (281)
T ss_dssp ---CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---------------
T ss_pred CcEEEEEcCCCC----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---------------
Confidence 456677766532 3699999999999999999999999999999999999999999998876
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+++||||++.+|++||+||+.++.
T Consensus 98 --------------------------------------------------------~i~~v~Q~~~l~~~tv~eni~~~~ 121 (281)
T d1r0wa_ 98 --------------------------------------------------------RVSFCSQFSWIMPGTIKENIIFGV 121 (281)
T ss_dssp --------------------------------------------------------CEEEECSSCCCCSEEHHHHHTTTS
T ss_pred --------------------------------------------------------EEEEEeccccccCceeeccccccc
Confidence 367899999999999999999877
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..++.+.+++++.+++.+++..+|++++|.+ +|.+||||||||++|||||+++|+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~ 201 (281)
T d1r0wa_ 122 SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 201 (281)
T ss_dssp CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHH
Confidence 7888899999999999999999999999988 78999999999999999999999976
Q ss_pred ---cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 ---KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..+++| | ++.++.||||+||++|+|+
T Consensus 202 ~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 202 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSY 236 (281)
T ss_dssp CCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEE
T ss_pred HHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEE
Confidence 124566 2 4456789999999999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.3e-39 Score=324.98 Aligned_cols=169 Identities=26% Similarity=0.384 Sum_probs=142.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|||++|++ .+|+||||+|++||.+||+||||||||||+++|+|+.+|++|+|.+||+|+++.
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~----------- 67 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL----------- 67 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred EEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEecccc-----------
Confidence 789999999964 489999999999999999999999999999999999999999999999999877
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC--
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF-- 593 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~-- 593 (677)
+.. |++||||||++.|| +.|++||+.++
T Consensus 68 -----------------------------------------------~~~--~r~ig~v~Q~~~l~~~~tV~enl~~~~~ 98 (229)
T d3d31a2 68 -----------------------------------------------SPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMR 98 (229)
T ss_dssp -----------------------------------------------CHH--HHTCEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred -----------------------------------------------chh--HhcceeeccccccCccccHHHHHHHHHh
Confidence 332 67899999999999 46999999643
Q ss_pred --CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 594 --GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 594 --~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
+...++++.++++..++.++.++ ...+||||||||++|||||+.+|+++
T Consensus 99 ~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~ 169 (229)
T d3d31a2 99 MKKIKDPKRVLDTARDLKIEHLLDR---------NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169 (229)
T ss_dssp HHCCCCHHHHHHHHHHTTCTTTTTS---------CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHhcchhhHhC---------ChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHH
Confidence 23456778999999988776544 35789999999999999999999977
Q ss_pred -----cccccce---eccc---c-cccEEEEEeCCeeC
Q psy845 652 -----KKSGVNI---TRPV---T-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~~~~TI---LsTI---~-~aDrIlVLd~GrIV 677 (677)
...+.|| .|.+ . -||||+||++|+|+
T Consensus 170 l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 170 LSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred HHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 3332 2 39999999999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.8e-39 Score=324.06 Aligned_cols=178 Identities=25% Similarity=0.389 Sum_probs=137.4
Q ss_pred EEEEeeeEEeCCCCC--ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~--~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|+++||+++|+++.+ .+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||+|+.+.+..
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~------ 75 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD------ 75 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH------
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChh------
Confidence 789999999975533 479999999999999999999999999999999999999999999999999887322
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccc-ccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
....+ |++||||+|++.|| +.|++||+.+
T Consensus 76 -------------------------------------------------~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~ 106 (230)
T d1l2ta_ 76 -------------------------------------------------ELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106 (230)
T ss_dssp -------------------------------------------------HHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred -------------------------------------------------hcchhhcceEEEEecchhhCcCccHHHHHhH
Confidence 22233 46799999999998 5699999853
Q ss_pred C------CCCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 593 F------GRCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 593 ~------~~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
. +..+.+ ++.+.++..++.+-. .+. ...+||||||||+||||||+.+|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~~--~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~ 178 (230)
T d1l2ta_ 107 PLIFKYRGAMSGEERRKRALECLKMAELEERF------ANH--KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178 (230)
T ss_dssp HHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG------TTC--CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhchhhhh------hcC--ChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCH
Confidence 1 123333 344455555554311 111 34689999999999999999999977
Q ss_pred --------------cccccce---ec---ccccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---Ls---TI~~aDrIlVLd~GrIV 677 (677)
...|+|+ +| ..+-||||++|++|+|+
T Consensus 179 ~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv 224 (230)
T d1l2ta_ 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224 (230)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEE
Confidence 1235662 33 34569999999999985
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-38 Score=322.57 Aligned_cols=177 Identities=28% Similarity=0.388 Sum_probs=144.1
Q ss_pred EEEEeeeEEeCCCCC--ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~--~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|+++||+++|+++.. .||+||||+|++||.+||+||||||||||+++|+|+.+|++|+|.+||+|+.+.+..
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~------ 75 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES------ 75 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHH------
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChh------
Confidence 789999999976532 579999999999999999999999999999999999999999999999999877211
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+...+|+++|+|||++.||. .|++||+.+.
T Consensus 76 -------------------------------------------------~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~ 106 (240)
T d3dhwc1 76 -------------------------------------------------ELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106 (240)
T ss_dssp -------------------------------------------------HHHHHHHHEEECCSSCCCCTTSBHHHHHHHH
T ss_pred -------------------------------------------------hhhhhhccccccccccccCCCccHHHHHHHH
Confidence 45567889999999999995 5999999532
Q ss_pred ---CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 ---GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ---~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
...+ ++++.++++.+|+.++..+ ...+||||||||+||||||+.+|+++
T Consensus 107 l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~---------~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~ 177 (240)
T d3dhwc1 107 LELDNTPKDEVKRRVTELLSLVGLGDKHDS---------YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177 (240)
T ss_dssp HHTTTCCTTHHHHHHHHHHHHHSTTTTTSS---------CBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhh
Confidence 1222 3457788888888765332 45799999999999999999999977
Q ss_pred ---------cc-cccce---eccc---c-cccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVNI---TRPV---T-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~TI---LsTI---~-~aDrIlVLd~GrIV 677 (677)
.. .|.|+ .|.+ . -||||+||++|+|+
T Consensus 178 ~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv 220 (240)
T d3dhwc1 178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220 (240)
T ss_dssp HHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 12 35663 3332 2 39999999999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.2e-39 Score=327.37 Aligned_cols=178 Identities=24% Similarity=0.303 Sum_probs=144.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++++..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||+|+.+.+..
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~------- 75 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL------- 75 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEE-------
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchh-------
Confidence 5899999999976555799999999999999999999999999999999999999999999999999765100
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
.....|++||||+|++.||. .|++||+.++-
T Consensus 76 ------------------------------------------------~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l 107 (242)
T d1oxxk2 76 ------------------------------------------------IVPPEDRKIGMVFQTWALYPNLTAFENIAFPL 107 (242)
T ss_dssp ------------------------------------------------SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGG
T ss_pred ------------------------------------------------hcchhhccceEEeccccccccccHHHHhhhhh
Confidence 23345788999999999995 59999996432
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+. +.+.++++.+++.++..+. ..+||||||||++|||||+.+|+++
T Consensus 108 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~---------p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~ 178 (242)
T d1oxxk2 108 TNMKMSKEEIRKRVEEVAKILDIHHVLNHF---------PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178 (242)
T ss_dssp TTSSCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred HhhcCCHHHHHHHHHHHHhhcChHhhhhCC---------hhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHH
Confidence 2333 4477888888887765443 4689999999999999999999976
Q ss_pred ---------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...+.|+ .|. + +-||||+||++|+|+
T Consensus 179 i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv 220 (242)
T d1oxxk2 179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220 (242)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1125663 333 2 349999999999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-39 Score=324.15 Aligned_cols=170 Identities=22% Similarity=0.343 Sum_probs=112.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++++|+++|++|+|.+||+++.+.
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~----------- 67 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT----------- 67 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTS-----------
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCC-----------
Confidence 789999999965 3699999999999999999999999999999999999999999999999998776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~ 595 (677)
+. .|++||||||++.|| +.|++||+.++..
T Consensus 68 -----------------------------------------------~~--~~r~ig~v~Q~~~l~~~~tv~eni~~~~~ 98 (232)
T d2awna2 68 -----------------------------------------------PP--AERGVGMVFQSYALYPHLSVAENMSFGLK 98 (232)
T ss_dssp -----------------------------------------------CG--GGTCEEEECSSCCC---------------
T ss_pred -----------------------------------------------ch--hhceeeeeccccccccchhHHHHHHHHHH
Confidence 21 256788888888888 5699999975431
Q ss_pred ---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 596 ---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 596 ---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.+ ++++.++++..++.++..+ ...+||||||||++|||||+.+|+++
T Consensus 99 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~---------~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i 169 (232)
T d2awna2 99 LAGAKKEVINQRVNQVAEVLQLAHLLDR---------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 169 (232)
T ss_dssp ------CHHHHHHHHHHHHC------------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCCChhhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 22 3447778888888776554 35689999999999999999999976
Q ss_pred --------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
...|+|+ .|.+ +-||||+||++|+|+
T Consensus 170 ~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv 210 (232)
T d2awna2 170 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 210 (232)
T ss_dssp HHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 3332 239999999999985
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.2e-38 Score=322.84 Aligned_cols=171 Identities=24% Similarity=0.311 Sum_probs=136.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++|++++|++ ..||+||||+|++||++||+||||||||||+++++|+++|++|+|.+||+|+++.
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~---------- 73 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL---------- 73 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred eEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccC----------
Confidence 5999999999975 3699999999999999999999999999999999999999999999999999876
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+. .|++||||||++.|| +.|++||+.++.
T Consensus 74 ------------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~enl~~~~ 103 (239)
T d1v43a3 74 ------------------------------------------------PP--KDRNISMVFQSYAVWPHMTVYENIAFPL 103 (239)
T ss_dssp ------------------------------------------------CG--GGGTEEEEEC------CCCHHHHHHTTC
T ss_pred ------------------------------------------------Cc--ccceEEEEeechhhcccchHHHHHHHHH
Confidence 22 256799999999999 579999997653
Q ss_pred ---CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+.+ .+.++++..++.++..+ ...+||||||||++|||||+.+|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~ 174 (239)
T d1v43a3 104 KIKKFPKDEIDKRVRWAAELLQIEELLNR---------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174 (239)
T ss_dssp C--CCCHHHHHHHHHHHHHHTTCGGGTTS---------CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhcC---------ChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHH
Confidence 33443 35567888887765433 45789999999999999999999977
Q ss_pred ---------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
...|+|+ +|.+ +-||||+||++|+|+
T Consensus 175 i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv 216 (239)
T d1v43a3 175 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 216 (239)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1136673 3433 349999999999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.7e-38 Score=320.39 Aligned_cols=177 Identities=24% Similarity=0.289 Sum_probs=141.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++ ..||+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~------ 74 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI------ 74 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTE------
T ss_pred cEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhh------
Confidence 4899999999975 36999999999999999999999999999999999999999999999999997761100
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
.....|++||+|+|++.||. .|++||+.++.
T Consensus 75 ------------------------------------------------~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~ 106 (240)
T d1g2912 75 ------------------------------------------------FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL 106 (240)
T ss_dssp ------------------------------------------------ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred ------------------------------------------------hcccccccceecccchhhcchhhhhHhhhhhH
Confidence 11223678999999999995 59999996431
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+. +++.++++.+++.++..+ ...+||||||||++|||||+.+|+++
T Consensus 107 ~~~~~~~~e~~~~v~~~l~~~~l~~~~~~---------~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~ 177 (240)
T d1g2912 107 KLRKVPRQEIDQRVREVAELLGLTELLNR---------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR 177 (240)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTCGGGTTC---------CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHH
Confidence 2333 346778888888765443 35789999999999999999999977
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .|.|| .|.+ +-||||+||++|+|+
T Consensus 178 i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv 219 (240)
T d1g2912 178 MRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219 (240)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 11 26663 3333 239999999999985
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.5e-37 Score=314.45 Aligned_cols=187 Identities=25% Similarity=0.330 Sum_probs=145.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++ .+||+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~------- 72 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK------- 72 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECT-------
T ss_pred eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCcc-------
Confidence 5899999999965 3699999999999999999999999999999999999999999999999999876211
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC-
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF- 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~- 593 (677)
++..+.. ........|+++|+|+|+|.+|. .|++||+..+
T Consensus 73 ----------------------------------~~~~~~~----~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~ 114 (258)
T d1b0ua_ 73 ----------------------------------DGQLKVA----DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP 114 (258)
T ss_dssp ----------------------------------TSSEEES----CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred ----------------------------------chhcccc----cHhHHHHHhcceEEEEechhhccchhcchhhhhhH
Confidence 1110000 11155678999999999999995 6999998532
Q ss_pred ---CCCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 ---GRCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ---~~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
...+. +.+.++++.+++.+.... . ...+||||||||++|||||..+|+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~--~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~ 186 (258)
T d1b0ua_ 115 IQVLGLSKHDARERALKYLAKVGIDERAQG------K--YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 186 (258)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTTCCHHHHT------S--CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhhc------c--CcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHH
Confidence 12332 346677888888654322 1 24589999999999999999999976
Q ss_pred ---------cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+|+|| .|. +. -||||+||++|+|+
T Consensus 187 ~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 187 EVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp HHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 2356673 333 22 39999999999985
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.6e-36 Score=307.96 Aligned_cols=173 Identities=25% Similarity=0.335 Sum_probs=135.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|++. +||+||||++++||++||+||||||||||+++|+|+++|++|+|.+||.|++..
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~---------- 71 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK---------- 71 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----------
T ss_pred eEEEEEEEEEECCe--EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccch----------
Confidence 37999999999753 699999999999999999999999999999999999999999999999999887
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccc-ccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
++.+. |..|++|||++.+| +.|++||+.++
T Consensus 72 ------------------------------------------------~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~ 103 (254)
T d1g6ha_ 72 ------------------------------------------------EPAELYHYGIVRTFQTPQPLKEMTVLENLLIG 103 (254)
T ss_dssp ------------------------------------------------CHHHHHHHTEEECCCCCGGGGGSBHHHHHHGG
T ss_pred ------------------------------------------------hHHHHHHhcCCccCCccccCCCCeeeeeeeeh
Confidence 44443 44588999999887 56999999643
Q ss_pred CC----------------CChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--
Q psy845 594 GR----------------CHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-- 651 (677)
Q Consensus 594 ~~----------------~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-- 651 (677)
.. ..++ +..++++..++.+.. |. ...+||||||||++|||||+.+|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgG~~Qrv~iAraL~~~P~llil 174 (254)
T d1g6ha_ 104 EICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-------DR--KAGELSGGQMKLVEIGRALMTNPKMIVM 174 (254)
T ss_dssp GTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-------TS--BGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred hhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhc-------cC--chhhCCcHHHHHHHHHHHHHhCcCchhh
Confidence 11 1122 233344444444332 22 46789999999999999999999976
Q ss_pred ----------------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ----------------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+|+|| .| .+ +-||||+||++|+|+
T Consensus 175 DEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 175 DEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEE
Confidence 2346673 23 23 349999999999985
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-36 Score=306.05 Aligned_cols=173 Identities=25% Similarity=0.398 Sum_probs=139.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|.|+++|++++|++. +||+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+.
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~--------- 69 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--------- 69 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC---------
T ss_pred CCEEEEeEEEEECCE--EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC---------
Confidence 569999999999754 699999999999999999999999999999999999999999999999998764
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
...+|++++||||++.+| +.|++||+.+.
T Consensus 70 --------------------------------------------------~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~ 99 (238)
T d1vpla_ 70 --------------------------------------------------PHEVRKLISYLPEEAGAYRNMQGIEYLRFV 99 (238)
T ss_dssp --------------------------------------------------HHHHHTTEEEECTTCCCCTTSBHHHHHHHH
T ss_pred --------------------------------------------------hHHHHhhEeEeeeccccCCCccHHHHHHHH
Confidence 346778888888888777 56999999543
Q ss_pred C---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..++++ +.++++..++.+.... +..+||||||||++||||++.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~ 170 (238)
T d1vpla_ 100 AGFYASSSSEIEEMVERATEIAGLGEKIKD---------RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170 (238)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHCCGGGGGS---------BGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhCCCHHHHhh---------hhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 2 233443 4555566666554332 45689999999999999999999976
Q ss_pred ---------cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+|+|| .|. +. -||||+||++|+|+
T Consensus 171 ~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv 212 (238)
T d1vpla_ 171 EVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV 212 (238)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 2356773 222 23 39999999999985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.6e-36 Score=304.74 Aligned_cols=178 Identities=24% Similarity=0.390 Sum_probs=134.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++. .||+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.
T Consensus 6 ~Lev~~l~k~yg~~--~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~---------- 73 (240)
T d1ji0a_ 6 VLEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK---------- 73 (240)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----------
T ss_pred EEEEeeEEEEECCE--EEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccc----------
Confidence 48999999999753 699999999999999999999999999999999999999999999999999887
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhcccccccccccc-cchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+.+.. |..++++||++.+|+ .|++||+.++
T Consensus 74 ------------------------------------------------~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~ 105 (240)
T d1ji0a_ 74 ------------------------------------------------PAHVINRMGIALVPEGRRIFPELTVYENLMMG 105 (240)
T ss_dssp ------------------------------------------------CHHHHHHTTEEEECSSCCCCTTSBHHHHHHGG
T ss_pred ------------------------------------------------cHHHHHHhcccccCcccccCCcccHHHHHHHH
Confidence 33333 445888999998885 5999998643
Q ss_pred C--CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 594 G--RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 594 ~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
. ....++..+.++.+- +....+.+..+. ...+||||||||++|||||+.+|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~--~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~ 181 (240)
T d1ji0a_ 106 AYNRKDKEGIKRDLEWIF--SLFPRLKERLKQ--LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181 (240)
T ss_dssp GTTCCCSSHHHHHHHHHH--HHCHHHHTTTTS--BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHH--HHhhChHHHHhC--chhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHH
Confidence 2 222333333322210 111112222222 46799999999999999999999976
Q ss_pred ----cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+|+|| .|.+ +-||||+||++|||+
T Consensus 182 i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv 218 (240)
T d1ji0a_ 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp HHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 2356773 3322 349999999999985
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.3e-34 Score=289.18 Aligned_cols=166 Identities=28% Similarity=0.379 Sum_probs=131.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+++ |+..+|++- .+ |+||+++ ||.+||+||||||||||+++|+|+++|++|+|.+||+|+.++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~----------- 65 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL----------- 65 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred EEE-EEEEEECCE---EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcC-----------
Confidence 445 567777642 34 8999995 689999999999999999999999999999999999999877
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+. .|++||||||++.||. .|++||+.++-
T Consensus 66 -----------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltV~enl~~~l~ 96 (240)
T d2onka1 66 -----------------------------------------------PP--ERRGIGFVPQDYALFPHLSVYRNIAYGLR 96 (240)
T ss_dssp -----------------------------------------------CT--TTSCCBCCCSSCCCCTTSCHHHHHHTTCT
T ss_pred -----------------------------------------------CH--HHcCceeeccchhhcccchhhHhhhhhhc
Confidence 22 2678999999999995 69999997642
Q ss_pred CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 595 RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 595 ~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
..+ ++.+.++++.+++.++..+ ...+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~v~~~l~~~gl~~~~~~---------~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~ 167 (240)
T d2onka1 97 NVERVERDRRVREMAEKLGIAHLLDR---------KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167 (240)
T ss_dssp TSCHHHHHHHHHHHHHTTTCTTTTTC---------CGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCcHhhhhC---------ChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHH
Confidence 233 2446777888888766544 35689999999999999999999977
Q ss_pred -----cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -----KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|.+ +-||||+||++|+++
T Consensus 168 ~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii 206 (240)
T d2onka1 168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV 206 (240)
T ss_dssp HHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25562 3332 249999999999985
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=5.3e-32 Score=266.68 Aligned_cols=140 Identities=21% Similarity=0.357 Sum_probs=116.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++|+|++|+ ++||+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+++++.
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~---------- 68 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV---------- 68 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGG----------
T ss_pred eEEEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHh----------
Confidence 589999999994 3699999999999999999999999999999999999999999999999988654
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhcccc--
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDP-- 592 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~-- 592 (677)
|.+++++||++.++ +-|++||+..
T Consensus 69 -----------------------------------------------------~~~i~~~~~~~~~~~~~t~~~~l~~~~ 95 (200)
T d1sgwa_ 69 -----------------------------------------------------KGKIFFLPEEIIVPRKISVEDYLKAVA 95 (200)
T ss_dssp -----------------------------------------------------GGGEEEECSSCCCCTTSBHHHHHHHHH
T ss_pred -----------------------------------------------------cCcEEEEeecccCCCCcCHHHHHHHHH
Confidence 44566666666665 3478888742
Q ss_pred ---CCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 593 ---FGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 593 ---~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+.+.+++|+.++++..++.+. +. +..+||||||||++||||++++|+++
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~~--------~~--~~~~LSgG~~qrv~ia~al~~~~~ll 147 (200)
T d1sgwa_ 96 SLYGVKVNKNEIMDALESVEVLDL--------KK--KLGELSQGTIRRVQLASTLLVNAEIY 147 (200)
T ss_dssp HHTTCCCCHHHHHHHHHHTTCCCT--------TS--BGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred HhcCCccCHHHHHHHHHHcCCccc--------cc--ccCcCCCcHHHHHHHHHHHhcCCCEE
Confidence 235677888888888776442 22 33589999999999999999999976
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.1e-31 Score=269.97 Aligned_cols=167 Identities=22% Similarity=0.290 Sum_probs=133.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+.+| +|+||||+|++||.+||+||||||||||+++|+|++ |++|+|.++|+|+...
T Consensus 4 l~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~----------- 65 (231)
T d1l7vc_ 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAW----------- 65 (231)
T ss_dssp EEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGS-----------
T ss_pred EEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcC-----------
Confidence 7899997654 699999999999999999999999999999999986 6899999999999887
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~- 594 (677)
+...++.+.++++|+... |..++.+|+..+.
T Consensus 66 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 98 (231)
T d1l7vc_ 66 -----------------------------------------------SATKLALHRAYLSQQQTPPFATPVWHYLTLHQH 98 (231)
T ss_dssp -----------------------------------------------CHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCS
T ss_pred -----------------------------------------------CHHHHHhhceeeeccccCCccccHHHHhhhccc
Confidence 666677777888877664 6778888886432
Q ss_pred -CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhc-------cchhh---------------
Q psy845 595 -RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLR-------KTKKK--------------- 651 (677)
Q Consensus 595 -~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr-------~p~IL--------------- 651 (677)
+...+.+.++++..++.+++.+ +..+||||||||++||||+++ +|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~---------~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~ 169 (231)
T d1l7vc_ 99 DKTRTELLNDVAGALALDDKLGR---------STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 169 (231)
T ss_dssp CTTCHHHHHHHHHHTTCTTTTTS---------BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHH
T ss_pred hhhHHHHHHHHHHhcCCHhHhCc---------ChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHH
Confidence 2334557788888887765432 456899999999999999997 55665
Q ss_pred ---------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+|+|| .|. .+.||||+||++|+++
T Consensus 170 ~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv 211 (231)
T d1l7vc_ 170 ALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 211 (231)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEEC
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE
Confidence 2356663 332 3459999999999986
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=1.4e-18 Score=171.97 Aligned_cols=238 Identities=13% Similarity=0.096 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy845 168 TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFA 242 (677)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~ 242 (677)
.+.+.+..-...+..+++..++..++|+|++.. +..||+. ++ .++++|.+.+++.+. ......+..++.+++.
T Consensus 70 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~-~~~~~~~~~~g~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~i~~ 147 (319)
T d3b60a2 70 GITSYISSYCISWVSGKVVMTMRRRLFGHMMGM-PVAFFDKQSTGTLLSRITYDSEQVASSSS-GALITVVREGASIIGL 147 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CSTHHHHSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhccccchhhHHHHhhccc-chhhccccccccccccccccccccccccc-cccchhhhhhhhhhhH
Confidence 333444444445555666667777999999986 5589943 34 455555555555443 4556788888899999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHH
Q psy845 243 FLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE 322 (677)
Q Consensus 243 ~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~ 322 (677)
++.++..+|.+++++++..++...+...+.++.++..+..++..++.++.+.|.++|++++|+++.|+.+.+++++..++
T Consensus 148 ~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~ 227 (319)
T d3b60a2 148 FIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNK 227 (319)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhh
Confidence 99999999999999999999998888888888888888888888999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVE 400 (677)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~e 400 (677)
..+...+..............+..+ +.+++.|.+.+.+|.+|+|.+.+++++...+..|+..+.+...+++++.+|.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ 307 (319)
T d3b60a2 228 MRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQ 307 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776666555444444333333332 23344555677899999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy845 401 RINNCSK 407 (677)
Q Consensus 401 RI~eil~ 407 (677)
|+.|+++
T Consensus 308 Ri~elld 314 (319)
T d3b60a2 308 TLFAILD 314 (319)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999994
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.86 E-value=5.4e-19 Score=175.59 Aligned_cols=238 Identities=16% Similarity=0.189 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHH
Q psy845 168 TLYHLISKVFRSVYLRS----VFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWS 238 (677)
Q Consensus 168 ~~~~~~~~~~~~~~~~~----~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ 238 (677)
.+.+.++...+.+...+ +..++...+|+|++.. +..||+. ++ .++++|.+.+.+.+. ..+...+.+++.
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~-~~~~~~~~~~g~~~~~~~~d~~~i~~~~~-~~~~~~~~~~~~ 148 (323)
T d2hyda2 71 VIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQAL-SARFYANNQVGQVISRVINDVEQTKDFIL-TGLMNIWLDCIT 148 (323)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHTSCHHHHHHHHHHHHHHTHHHHH-CCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhcc-cccccccccccccccccchhhhhhccchh-hhhhhcchhhhh
Confidence 34444444444554444 4445556889999887 5699953 34 444555555555443 334567778888
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHH
Q psy845 239 MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCE 318 (677)
Q Consensus 239 ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~ 318 (677)
+++.++.++..+|.++++.++..++...+...+.++.++..+...+..++.++.+.|.++|+++||+|+.|+.+.+++++
T Consensus 149 ~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~ 228 (323)
T d2hyda2 149 IIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228 (323)
T ss_dssp HHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhc
Confidence 88889999999999999999899999999999999998888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 319 QYDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNF 396 (677)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~ 396 (677)
..++..+...+..............+..+ ..+++.|.+.+.+|.+++|.+.+++++...+.+|+..+.+.+.+++++.
T Consensus 229 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 308 (323)
T d2hyda2 229 KNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSF 308 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888776665554444444333333332 3345566678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy845 397 LAVERINNCSK 407 (677)
Q Consensus 397 ~s~eRI~eil~ 407 (677)
+|.+|+.|++|
T Consensus 309 ~s~~Ri~elLd 319 (323)
T d2hyda2 309 ASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 99999999994
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.25 E-value=1.2e-13 Score=128.01 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=34.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
|++|+||+|||||||++.++|.++|+.|.+..+|.+...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~ 40 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPE 40 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC---
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHH
Confidence 699999999999999999999999999999998766533
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=2e-08 Score=100.11 Aligned_cols=58 Identities=24% Similarity=0.428 Sum_probs=48.5
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg 584 (677)
+-+.+|.||||||||+++|.|+.+|++|+|.++|+|+.+.+.+++++.= .+=.++|..
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r---r~ig~VfQ~ 90 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR---RQIGMIFQH 90 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH---HHEEECCSS
T ss_pred EEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh---ccccccccc
Confidence 3467899999999999999999999999999999999999998877642 233555543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.30 E-value=3.3e-08 Score=98.63 Aligned_cols=43 Identities=33% Similarity=0.403 Sum_probs=38.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
-+.+|.||||||||++||.|+.+|++|+|++||.|++..+...
T Consensus 34 ~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~ 76 (242)
T d1oxxk2 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (242)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred EEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhh
Confidence 3678999999999999999999999999999999998766543
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.25 E-value=6.8e-08 Score=96.13 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=33.6
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||++||.|+.+||+|+|.++|.|+
T Consensus 35 ~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i 70 (239)
T d1v43a3 35 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 70 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceec
Confidence 367899999999999999999999999999999874
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=8.2e-08 Score=95.99 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=33.4
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.||.||||||||+++|+|+++|++|+|++||.|
T Consensus 43 vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~ 77 (251)
T d1jj7a_ 43 TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKP 77 (251)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEe
Confidence 37889999999999999999999999999999987
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=98.22 E-value=9.6e-08 Score=94.99 Aligned_cols=36 Identities=33% Similarity=0.545 Sum_probs=33.6
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|+|+++|++|+|++||.|+
T Consensus 31 vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 66 (242)
T d1mv5a_ 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66 (242)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEe
Confidence 367899999999999999999999999999999883
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.21 E-value=8.4e-08 Score=92.62 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|+|+++|++|+|.+||.+
T Consensus 30 ~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~ 64 (200)
T d1sgwa_ 30 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP 64 (200)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCChHHHHHHHHhcccccCCCEEEECCEe
Confidence 36789999999999999999999999999999986
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.20 E-value=9.2e-08 Score=94.62 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=44.0
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 571 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~ 571 (677)
-+.+|.||||||||+++|.|+.+|++|+|++||.|+...+.+++++.
T Consensus 34 ~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 36789999999999999999999999999999999999999988765
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=98.18 E-value=9.1e-08 Score=96.10 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=38.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 565 (677)
-|.+|.||||||||+++|.|+++|++|+|++||+|++..+.
T Consensus 31 ~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~ 71 (258)
T d1b0ua_ 31 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD 71 (258)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEEC
T ss_pred EEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCc
Confidence 47789999999999999999999999999999999988764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=98.18 E-value=1.1e-07 Score=94.58 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=33.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|+|+.+|++|+|+++|.|
T Consensus 35 ~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD 69 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCccEEEecccc
Confidence 46789999999999999999999999999999987
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=1.2e-07 Score=93.78 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=34.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+.+.+|.||||||||++||.|+.+|++|+|+++|.++
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i 64 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 64 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence 3467899999999999999999999999999999874
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.17 E-value=1.3e-07 Score=94.16 Aligned_cols=37 Identities=32% Similarity=0.597 Sum_probs=34.1
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+-+.+|.||||||||+++|.|+.+|++|+|+++|.|+
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i 62 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence 3467899999999999999999999999999999884
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=98.16 E-value=1.3e-07 Score=94.06 Aligned_cols=42 Identities=36% Similarity=0.378 Sum_probs=38.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHH
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 566 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 566 (677)
-+.+|.||||||||+++|.|+.+|++|+|+++|.|+...+..
T Consensus 32 ~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~ 73 (240)
T d1g2912 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73 (240)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGT
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchh
Confidence 467899999999999999999999999999999998876554
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=1.3e-07 Score=94.05 Aligned_cols=35 Identities=46% Similarity=0.673 Sum_probs=33.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 32 vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 66 (241)
T d2pmka1 32 IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 66 (241)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEE
Confidence 36789999999999999999999999999999987
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=98.13 E-value=1.1e-07 Score=93.92 Aligned_cols=36 Identities=36% Similarity=0.453 Sum_probs=33.8
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||++||.|+.+|++|+|++||.|+
T Consensus 29 ~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i 64 (229)
T d3d31a2 29 FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV 64 (229)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEec
Confidence 467899999999999999999999999999999984
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.13 E-value=1.5e-07 Score=94.03 Aligned_cols=36 Identities=28% Similarity=0.554 Sum_probs=33.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-|.+|.||||||||+++|.|+++||+|+|+++|.|+
T Consensus 33 ~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 33 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 68 (254)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEec
Confidence 367899999999999999999999999999999983
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.13 E-value=1.9e-07 Score=93.66 Aligned_cols=72 Identities=28% Similarity=0.457 Sum_probs=50.9
Q ss_pred CCCCccEEEECCEecccccH-HHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 488 VELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 488 y~p~~G~I~IdG~dI~~l~~-~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
.++.+|+|.++++..+--+. ..+-+++.+--.... +-+.+|.||||||||+++|+|+++|++|+|++||.|+
T Consensus 10 l~~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge-~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 82 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGE-TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 82 (255)
T ss_dssp CCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTC-EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG
T ss_pred CCCCCCEEEEEEEEEEeCCCCCcceeceEEEEcCCC-EEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEc
Confidence 45678889888776532111 112334443332222 3378899999999999999999999999999999983
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.11 E-value=1.9e-07 Score=93.34 Aligned_cols=36 Identities=33% Similarity=0.646 Sum_probs=33.7
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+-+.||.||||||||+++|+|+++|++|+|++||.|
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 78 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 78 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred EEEEECCCCChHHHHHHHHhcccCCCccEEEECCcc
Confidence 347899999999999999999999999999999987
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=2.2e-07 Score=92.20 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=33.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-|.+|.||||||||+++|.|+++|++|+|.++|+|
T Consensus 31 ~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~ 65 (238)
T d1vpla_ 31 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN 65 (238)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEe
Confidence 36789999999999999999999999999999988
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=2.9e-06 Score=83.41 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=31.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-|.+|.||||||||+++|.|+. |++|+|.++|+|+
T Consensus 28 ~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i 62 (231)
T d1l7vc_ 28 LHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPL 62 (231)
T ss_dssp EECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBG
T ss_pred EEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEEC
Confidence 3778999999999999999986 5899999999863
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.49 E-value=7.7e-06 Score=82.62 Aligned_cols=29 Identities=45% Similarity=0.647 Sum_probs=26.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQI 553 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i 553 (677)
-+.+|.||||||||+++|+|+++|++|+|
T Consensus 65 vaivG~nGsGKSTLl~~i~Gl~~p~~G~I 93 (281)
T d1r0wa_ 65 LAITGSTGSGKTSLLMLILGELEASEGII 93 (281)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEECCCCChHHHHHHHHhCCCcCCCcEE
Confidence 46789999999999999999999999963
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.41 E-value=1.6e-05 Score=72.09 Aligned_cols=99 Identities=9% Similarity=-0.064 Sum_probs=68.7
Q ss_pred ccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALE 606 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~ 606 (677)
.+|.||||||||+++|++..+++.|.+..++.+......+.........++...++..+..++....+...+.+
T Consensus 5 I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 78 (178)
T d1ye8a1 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ------ 78 (178)
T ss_dssp EECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH------
T ss_pred EECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcc------
Confidence 46999999999999999999999999999988866655544445556666777766666655543221111110
Q ss_pred HccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 607 KSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 607 ~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..++|+|++||.++|+|+.++|+++
T Consensus 79 --------------------~~~~~~~~~~~~~l~~~~~~~~~vl 103 (178)
T d1ye8a1 79 --------------------YFEELAIPILERAYREAKKDRRKVI 103 (178)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred --------------------hhhhhhhhhHHHHHHHHHhcCCCce
Confidence 1247799999999999999999866
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=3.2e-05 Score=71.59 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
|+.+.|+|||||||||+++.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 899999999999999999999887653
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=6.5e-06 Score=73.84 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
+.|.|+||+|+|||||++.+++.+....+.+.+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3589999999999999999999998777666554433
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=3.5e-05 Score=68.78 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=25.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
.++|+|++|||||||++-|.+-+.....++-+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v 35 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGL 35 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 68999999999999999999766544434444
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.22 E-value=5.8e-05 Score=67.38 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|-+|.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999999654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.20 E-value=8.9e-05 Score=66.44 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
.|+.+.|+||+||||||+.+.|++-+.. --+.+|+.++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~d~~ 40 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHSDDL 40 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecHHHH
Confidence 5889999999999999999999986521 1355666443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.18 E-value=9.6e-05 Score=72.29 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
+|++.+++|+||+|||||+|.|.+-.....|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 59999999999999999999999887777777753
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.02 E-value=0.0001 Score=65.67 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|+|.||+|||||||++.|+.-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999866
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.88 E-value=0.00036 Score=63.62 Aligned_cols=40 Identities=30% Similarity=0.435 Sum_probs=30.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC------------CCCccEEEECCEecccc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV------------ELSSGQIKIDDFDIASV 505 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y------------~p~~G~I~IdG~dI~~l 505 (677)
+|||+|++|+|||||++.|+|-. .+..|.+.++|.++..+
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 61 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeee
Confidence 79999999999999999998743 33456778888776554
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00019 Score=64.19 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++..+.|.||+||||||+.+.|++-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999855
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.88 E-value=0.00023 Score=63.60 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|-+|+|.||+||||||+.+.|+.-+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999998765
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00021 Score=62.24 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.|.|+||+||||||+.++|+.-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998755
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.85 E-value=0.00022 Score=63.44 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.+.|.|.|++||||||+.+.|++.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999874
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00024 Score=67.92 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE------------ECCEecccccHHHhhhh
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK------------IDDFDIASVELETLRSR 513 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~------------IdG~dI~~l~~~~~~~~ 513 (677)
.|..+.|+||||||||||.+.|+.-++-..-... .||+|..-++.++..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~ 63 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHH
Confidence 4899999999999999999998765432222221 36777666666655443
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.81 E-value=0.00018 Score=64.41 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEE
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I 495 (677)
++.|+|.|++||||||+++.|...+.....++
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 36899999999999999999987765554443
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.80 E-value=0.00024 Score=64.61 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.|||.||+||||||+.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999987654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.79 E-value=0.00011 Score=72.20 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~ 496 (677)
+|++.+++|+||+|||||+|.|.+-.....|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999987766666665
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.77 E-value=0.00018 Score=65.17 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCc---cEEEECCEe
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSS---GQIKIDDFD 501 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~---G~I~IdG~d 501 (677)
+.++|+|++|||||||++-|.+.+.... |.|.-|+.+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc
Confidence 3689999999999999998887766543 344445443
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.77 E-value=0.00023 Score=62.86 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
+.+.|+||+||||||+++.|++-++ +.+.++|.++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d~~ 37 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGDII 37 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEehHHH
Confidence 3689999999999999999998763 4555555443
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00016 Score=65.91 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|-+|.|+|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.70 E-value=0.00029 Score=65.12 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|||||++|+|||||+|.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 6999999999999999999984
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.70 E-value=0.0003 Score=62.53 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|.|+||+||||||+.+.|+.-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.68 E-value=0.00033 Score=61.53 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
+.+.++|++||||||+++.|.+- ..|...++..+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~d~ 36 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINRDD 36 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh---CCCCEEechHH
Confidence 46889999999999999987652 23555555433
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.56 E-value=0.0012 Score=60.88 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
++-+.+-++|++||||||+++-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5568999999999999999998864
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.52 E-value=0.00047 Score=62.47 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.|+|||++|+|||||+|.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=4.9e-05 Score=68.28 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=26.8
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.++.+++..+| .+.|+|||||||||++.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 45556666666 8999999999999999999643
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00063 Score=60.36 Aligned_cols=24 Identities=54% Similarity=0.617 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
|=+|+++|++|+|||||++.|+|-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.40 E-value=0.00077 Score=62.01 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|=++.|+||.||||||..+.|+.-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.38 E-value=0.00068 Score=62.48 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+...|.|+||+||||||+.+.|+.-|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999865
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.38 E-value=0.00052 Score=62.69 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
.|||||++|+|||||+|.|.|
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999976
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.38 E-value=0.00076 Score=60.87 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|+++|++|+|||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999843
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.38 E-value=0.00059 Score=69.66 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=33.2
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
.-++.|..+.|+||+||||||+++.|++..+|+.=-|.+
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 335667789999999999999999999999887666666
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.00077 Score=63.14 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999886654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00055 Score=61.45 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
=+|+|||++++|||||+|.|.+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998854
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.30 E-value=0.00066 Score=60.61 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.-++++||++|||||||++.|.+=.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998854
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.29 E-value=0.00082 Score=59.04 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++|||++|+|||||++.+.+=
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999988763
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.29 E-value=0.0008 Score=62.36 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q psy845 467 IGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~y 488 (677)
|.|+|||||||+||++.|+.-+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999886543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.00084 Score=58.33 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
|+++||++|+|||||++.+.+=
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999973
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.28 E-value=0.00091 Score=60.86 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|++||++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999974
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.0008 Score=62.49 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.+.+.|+||||||||||++.|++-
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999988854
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.00092 Score=60.17 Aligned_cols=22 Identities=50% Similarity=0.652 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.|+++|.+|+|||||+|.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999873
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.25 E-value=0.00089 Score=58.51 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
||.++|++|+|||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998874
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.22 E-value=0.00069 Score=61.70 Aligned_cols=21 Identities=57% Similarity=0.831 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q psy845 467 IGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~ 487 (677)
|||+|++|+|||||+|.|+|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.21 E-value=0.00034 Score=66.82 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=34.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCc--cEEEECCEecccc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSS--GQIKIDDFDIASV 505 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~--G~I~IdG~dI~~l 505 (677)
++|.+|.+.|.|||||||+.+.|..-+.-.. -.+.+||.++++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~ 67 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFG 67 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHh
Confidence 6789999999999999999999975432222 3577898887764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.001 Score=61.23 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|+|||++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999863
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.0026 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=23.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G 493 (677)
||+++|.+|+|||||++-+++ -|+|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence 689999999999999987765 4566666
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.10 E-value=0.0011 Score=59.86 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+.|+|++||||||+.+.|+.-+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.001 Score=62.73 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+++.|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999998763
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.03 E-value=0.0013 Score=61.28 Aligned_cols=21 Identities=48% Similarity=0.744 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q psy845 467 IGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~ 487 (677)
|.|+||||||||||++.|+.-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0011 Score=61.12 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-..+.|+||.||||||+.+.|+.-|
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4479999999999999999999977
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.99 E-value=0.0014 Score=59.48 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.+.++|++||||||+.++|+.-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999997644
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.97 E-value=0.0014 Score=64.29 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|+++|++|+||||++|.|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5999999999999999999985
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.00048 Score=61.11 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+||++|++|+|||||+|.|+|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999873
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.0021 Score=57.63 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++|+.+-|.||+||||||+..-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999876664
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.93 E-value=0.0016 Score=58.72 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|.|+||.||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997755
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.88 E-value=0.0017 Score=59.61 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.|+++|++||||||+.+.|++.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0034 Score=56.21 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhc-----CCCCCccE-----EEECCEec
Q psy845 465 ENIGIVGRTGAGKSSLLVALFR-----LVELSSGQ-----IKIDDFDI 502 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G~-----I~IdG~dI 502 (677)
-||+++|++|+|||||++.+.+ -|+|+-|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEE
Confidence 4899999999999999998763 34565553 45677654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.84 E-value=0.0017 Score=60.95 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.|+++|+.|||||||++.|.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998643
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.83 E-value=0.0022 Score=62.73 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
...||||+||||||++++|.-.
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~~ 47 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKWV 47 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999988554
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.80 E-value=0.0027 Score=56.53 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++++||++|||||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999998853
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0021 Score=59.00 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|.|+||.||||||..+.|+.-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998755
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.77 E-value=0.0011 Score=61.37 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=25.3
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++++..+.|+||.||||||+.+.|+.-|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999999866
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.76 E-value=0.0017 Score=59.67 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++.|.||+||||||+.+.|+.-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998766
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.75 E-value=0.002 Score=57.58 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.+.|.|++||||||+++.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999988764
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.74 E-value=0.0022 Score=58.51 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|.|+||.||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999866
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.72 E-value=0.0019 Score=58.23 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++.++|++||||||+.++|+.-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999998655
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.69 E-value=0.0023 Score=59.64 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|||-||+||||||..++|+.-|
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999866
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.0027 Score=64.15 Aligned_cols=42 Identities=24% Similarity=0.442 Sum_probs=29.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
.|+++|. .+|.+. . +++..++...+|+|||||||||++.+|+
T Consensus 5 ~l~l~NF-ks~~~~-----~--~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 5 GLELSNF-KSYRGV-----T--KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEEESC-SSCCSE-----E--EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCe-eeeCCC-----E--EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4777774 245421 1 2333545589999999999999999983
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.64 E-value=0.0021 Score=58.91 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+-.|+|-|+.||||||++++|.+-.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999865
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.0026 Score=57.14 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|+++||++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998874
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.62 E-value=0.0024 Score=58.57 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.+||.|++||||||+.+.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.61 E-value=0.0029 Score=66.03 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
.|||+|++|+|||||+|.|.|...-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 5999999999999999999996543333
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.60 E-value=0.0026 Score=58.25 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.|||||+..||||||++.|++.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHHHHHHh
Confidence 4999999999999999999974
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.0061 Score=54.76 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G 493 (677)
|+.+||++|+|||||++-+.. -|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 689999999999999998873 5666655
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0029 Score=57.42 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++.++||.||||||..+.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0056 Score=55.00 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=23.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCccEE
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSGQI 495 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G~I 495 (677)
||++||.+|+|||||++-+.. -|+|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 799999999999999987643 455776643
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.43 E-value=0.0072 Score=54.39 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=28.0
Q ss_pred EEEEEcCCCCChHHHHHHHh-----cCCCCCccE-----EEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALF-----RLVELSSGQ-----IKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~-----r~y~p~~G~-----I~IdG~dI 502 (677)
|+.++|.+|+|||||++-+. .-|+|+.|. +.+||.++
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~ 52 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV 52 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccc
Confidence 79999999999999999875 346676653 34666554
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.006 Score=54.82 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
|++++|++|+|||||++-+.+-..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 689999999999999999987643
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.0037 Score=57.62 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.|+|-||.||||||+.++|+.-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987653
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.0084 Score=53.64 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHh-cC----CCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALF-RL----VELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~-r~----y~p~~G 493 (677)
|+++||++|+|||||++-+. +- |+|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 78999999999999999655 32 556666
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.28 E-value=0.0038 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+.=+|++||+.|||||||++-|.+-
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3448999999999999999998873
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0042 Score=58.83 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|..|+|-|+.||||||++++|..-+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987754
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.23 E-value=0.0039 Score=57.72 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r 486 (677)
+.|+|+|+.|+|||||++.+.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999986
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0092 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
|+.++|.+|+|||||++.+.+-.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 68999999999999999987643
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0026 Score=64.51 Aligned_cols=37 Identities=30% Similarity=0.289 Sum_probs=27.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI 502 (677)
.|||.|++||||||+.+.|..... |.-.-|..||.=.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~ 123 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH 123 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence 789999999999999999887653 3333455577643
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0046 Score=57.67 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|..|+|-|+.||||||++++|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.19 E-value=0.0045 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++.|.||.||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0059 Score=54.25 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=23.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G 493 (677)
||++||..|+|||||++-+.+ -|+|+.|
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~ 34 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 34 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCcccccee
Confidence 689999999999999998864 4556555
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0081 Score=53.90 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|+.++|++|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998875
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.09 E-value=0.0043 Score=58.93 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
.-+-++||+||||||+++.|++-.. .+-+.+|+-+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~d~~~ 69 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTFK 69 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh--cceEEEecHHHH
Confidence 4588999999999999999999663 345666664443
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.06 E-value=0.0047 Score=55.39 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
++++||++|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998866
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0081 Score=53.63 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G 493 (677)
|+++||++|+|||||++-+.+ -|+|+.|
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~ 37 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCccc
Confidence 699999999999999998764 3455555
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.02 E-value=0.0051 Score=57.58 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
.|||.|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.00 E-value=0.005 Score=55.34 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G 493 (677)
|+++||++|+|||||++-+.+ -++|..|
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~ 39 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 39 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCcCHHHHHHHHHcCCCCcccccccc
Confidence 599999999999999997753 3455555
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.003 Score=64.42 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
.-+|||+||.|||||||++.|.+.+.-..-+|.+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav 87 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 87 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceee
Confidence 5589999999999999999998765433224433
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.84 E-value=0.0059 Score=54.46 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
||+++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986663
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.80 E-value=0.013 Score=53.96 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=26.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCccE------EEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSGQ------IKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G~------I~IdG~dI 502 (677)
|++++|+.|+|||||++-+.. -+.|+.|. +.++|.++
T Consensus 8 KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~ 55 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV 55 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEE
T ss_pred EEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEE
Confidence 499999999999999997663 34455552 44566553
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.011 Score=52.56 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=23.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCccE
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSGQ 494 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G~ 494 (677)
|+++||++|+|||||++-+.+ -|.|+-|.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 38 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED 38 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCCceee
Confidence 799999999999999988864 24455553
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.007 Score=54.99 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|+++||++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 599999999999999988875
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.73 E-value=0.0058 Score=58.42 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
++..+++|||+|+||||.+-=|+..+.-..-+|.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~l 39 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 39 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 57899999999999998766667665533335544
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.0071 Score=57.24 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+|..|+|-|+.||||||++++|....+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 799999999999999999999986654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.70 E-value=0.0067 Score=54.07 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++-+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999997643
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.0069 Score=54.70 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|+++||++|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999997654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.58 E-value=0.008 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++.++||.||||||+.+.|+.-|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.58 E-value=0.0079 Score=55.72 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
=++.|+||.||||||+.+.|+.-|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999866
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.58 E-value=0.0092 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++|+.+-|.||+||||||+..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8899999999999999999987654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.57 E-value=0.0075 Score=54.78 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
||+++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987763
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.49 E-value=0.0075 Score=53.76 Aligned_cols=21 Identities=43% Similarity=0.733 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|+++||++|+|||||++-++.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.015 Score=52.93 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999996654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.48 E-value=0.011 Score=52.64 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|+++||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.32 E-value=0.0091 Score=56.01 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+..+.|+||+|+|||||++-++.-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887643
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.0093 Score=53.67 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|+.+||++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 689999999999999998763
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.30 E-value=0.0096 Score=52.76 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
||+++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.30 E-value=0.014 Score=57.63 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=32.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC--CCCccEEEECCEecccccHHHhhhhccc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV--ELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y--~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
.+||+|+.|||||||+..|+..- ....|++. +|....+...++..|+++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti 55 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTV 55 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeE
Confidence 58999999999999999985321 12334433 4555555555555555554
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.28 E-value=0.0072 Score=54.69 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r 486 (677)
=+++++|++|+|||||++-+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999998864
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.013 Score=52.31 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G 493 (677)
|+.++|.+|+|||||++-+.+ -|+|+.|
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~ 37 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG 37 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 689999999999999997763 3456555
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.01 Score=55.57 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.|||+|+.||||||..+.+..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999998653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.22 E-value=0.014 Score=52.44 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=23.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCccE
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSGQ 494 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G~ 494 (677)
++.+||.+|+|||||++-+.+ -|+|+.|.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~ 39 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCcceee
Confidence 689999999999999998764 45666553
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.012 Score=52.93 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|+++||++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999977654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.10 E-value=0.0099 Score=59.47 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
|+.-+.++||+|+|||+|++.|++... .--+.+|+-++.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~~ 86 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFT 86 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGGS
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc--cchhcccccccc
Confidence 455778999999999999999999753 235666665553
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.0079 Score=57.72 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
++-..+++|||+|+||||.+-=|+..+.-..-+|.+
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l 42 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 42 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 344679999999999998766666555423225554
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.011 Score=52.61 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|+.+||.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.03 E-value=0.0079 Score=60.37 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.|||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999998877654
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.97 E-value=0.014 Score=53.78 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=23.3
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++|+.+-|.|++|+||||+..-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999987776
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.012 Score=55.54 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=26.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
.+-+.||+|+||||+++++++-..-+ -+.+++.+.+
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~~~~ 89 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASDVR 89 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhh--hhccccccch
Confidence 57899999999999999999965422 3345554443
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.012 Score=53.34 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|++++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999987653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.91 E-value=0.011 Score=55.77 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=28.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
.+-+.||+|+||||++++++.-+....+ .++|.+..+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~~~~ 73 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPVLVK 73 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTTCCS
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCcc--cccCccccc
Confidence 4789999999999999999998876644 345655543
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.88 E-value=0.014 Score=54.72 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
...+.|.||+|+||||+++.+++.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 458999999999999999999988765444
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.84 E-value=0.016 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=22.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHH-HHh
Q psy845 461 INHGENIGIVGRTGAGKSSLLV-ALF 485 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~-LL~ 485 (677)
+++|+.+-|.|++|+||||+.. ++.
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 8899999999999999999974 443
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.81 E-value=0.021 Score=51.84 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=22.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----CCCCCccEE
Q psy845 466 NIGIVGRTGAGKSSLLVALFR-----LVELSSGQI 495 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r-----~y~p~~G~I 495 (677)
|+.++|.+|+|||||++-++. -|.|+-|..
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~ 38 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCCceeec
Confidence 789999999999999986643 355665543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.80 E-value=0.014 Score=53.52 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.|+|-|.-||||||+++.|..-+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.015 Score=54.16 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=23.2
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++|+.+-|.||+||||||+..-++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 8899999999999999999987776
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.73 E-value=0.01 Score=53.41 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=9.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
||.+||.+|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999986664
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.013 Score=52.69 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
||++||.+|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999987764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.013 Score=52.75 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|+.++|++|+|||||++-+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999988764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.011 Score=53.34 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|++++|++|+|||||++-++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999987644
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.014 Score=52.37 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999998763
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.60 E-value=0.014 Score=55.99 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=19.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++..++++|||+|+||||.+-=|+..+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345579999999999998655445433
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.59 E-value=0.017 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.9
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHH
Q psy845 461 INHGENIGIVGRTGAGKSSLLVAL 484 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL 484 (677)
+++|+.+-|.||+||||||+..-+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 889999999999999999997644
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.53 E-value=0.017 Score=54.92 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|||+|+.+||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999873
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.016 Score=52.20 Aligned_cols=21 Identities=48% Similarity=0.724 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.41 E-value=0.024 Score=52.83 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=26.0
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.++.--+.+ .|.=+.|.|+||+||||++..|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455545555 788999999999999999977764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.40 E-value=0.015 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q psy845 467 IGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+-+.||+|+||||+++++++-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999853
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.018 Score=51.51 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
|++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999996543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.022 Score=50.82 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~ 485 (677)
|+.+||.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 78999999999999999887
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.33 E-value=0.016 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+-|.||+|+||||+++++++-.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.31 E-value=0.015 Score=52.05 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccE
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQ 494 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~ 494 (677)
|+.+||..|+|||||++-+..-.-|+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 78999999999999999887777788873
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.26 E-value=0.014 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
++.++|++|+|||||++-+..=..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999875443
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=93.25 E-value=0.02 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.3
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
+.+||.+.|.|++|+||||++.-++.
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999777764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.24 E-value=0.023 Score=53.14 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++|+.+.|.||+||||||+..-++.-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999998666543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.24 E-value=0.016 Score=60.10 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~ 494 (677)
.++-.+-+.|||||||||.+..+.+..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence 355689999999999999999999865433334
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.21 E-value=0.011 Score=56.63 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=19.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
+...+++|||+|+||||.+-=|+..+.-...+|.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l 45 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGL 45 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence 45679999999999998765555555422224443
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.21 E-value=0.02 Score=52.59 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=27.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
..+||..+++.|+=||||||++|.+++-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3578999999999999999999999987643
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.017 Score=57.90 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=27.7
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
=+.|.+|++.+|+|++|+|||||+..+++--
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999999998843
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.021 Score=51.97 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~ 485 (677)
|++++|.+|+|||||++-++
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 69999999999999998765
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.0077 Score=53.23 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=17.6
Q ss_pred ccccccCCCCCchhHHHHHHh
Q psy845 525 NGIVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~ 545 (677)
+-.+|+|||||||++.||.-.
T Consensus 27 tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 345699999999999999644
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.93 E-value=0.021 Score=53.76 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=27.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
.+-+.||+|+||||+++++++-+... ....++.+...
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~~~ 73 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIEK 73 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCC--EEEEETTTCCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC--eEeccCCcccc
Confidence 46799999999999999999966433 34455555544
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.023 Score=50.61 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~ 485 (677)
||++||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999875
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.88 E-value=0.022 Score=55.74 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+++||...||||||+|.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999964
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.86 E-value=0.024 Score=51.21 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChHHHHHHHh--cCCCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALF--RLVELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~--r~y~p~~G 493 (677)
|+.++|.+|+|||||++-+. .-+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 78999999999999999872 23568888
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.76 E-value=0.037 Score=52.09 Aligned_cols=41 Identities=22% Similarity=0.441 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCChHHHHHHH-hcCCCCCcc----EEEECCEecccc
Q psy845 465 ENIGIVGRTGAGKSSLLVAL-FRLVELSSG----QIKIDDFDIASV 505 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL-~r~y~p~~G----~I~IdG~dI~~l 505 (677)
-|+.++|.+|+|||||++-+ .+-+.|+-| ++.+++..+.-.
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~~~~ 52 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMF 52 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCCeEEEEEEECcEEEEEE
Confidence 38999999999999999876 344557777 234456555433
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.76 E-value=0.024 Score=53.40 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r 486 (677)
.+|||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999954
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.75 E-value=0.027 Score=55.08 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=30.0
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
+++...+-+.||+|+|||++++.+++.+... -+.+++.++.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l~ 82 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFV 82 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSST
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcCCC--EEEEEhHHhh
Confidence 3445668899999999999999999866422 3566665553
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.67 E-value=0.037 Score=51.47 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.0
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
--.|.=|.|.|+||+||||++-.|..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44588899999999999999877664
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.56 E-value=0.027 Score=56.23 Aligned_cols=37 Identities=35% Similarity=0.473 Sum_probs=25.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC------CCCccEEEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV------ELSSGQIKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y------~p~~G~I~IdG~dI 502 (677)
.|||-|++||||||+.+.|.... .+.-..|.+||.=.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCC
Confidence 78999999999999998764332 12233456676543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.56 E-value=0.03 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+..+.+|||+|+||||.+-=|+..+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999987777766554
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.55 E-value=0.025 Score=57.18 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.-++||.||-|||||||+.-|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998754
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.52 E-value=0.026 Score=55.48 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+++||..+|||||++|.|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999965
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.027 Score=51.41 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~ 485 (677)
||+++|++|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999987664
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.28 E-value=0.044 Score=54.07 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC------------CCCccEEEECC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV------------ELSSGQIKIDD 499 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y------------~p~~G~I~IdG 499 (677)
=++||||...+|||||++.|++-- +|.-|.+.+.+
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 369999999999999999998742 55668777654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.21 E-value=0.034 Score=51.09 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.|||+|...+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 48999999999999999998754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.025 Score=49.52 Aligned_cols=122 Identities=9% Similarity=-0.062 Sum_probs=61.7
Q ss_pred cccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC------C-CChHH
Q psy845 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG------R-CHDTE 600 (677)
Q Consensus 528 ~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~------~-~sdee 600 (677)
.|.+|+|||||++.+.+.+..+.+.....+.+..............-+.|+.........++..... . ...++
T Consensus 7 tG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (189)
T d2i3ba1 7 TGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVDLTS 86 (189)
T ss_dssp ESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEECHHH
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhccccccccccHHH
Confidence 5899999999999999999887665544444433333322233344445555444333333332110 1 11222
Q ss_pred HHHHHHHccchhhHhhh-hcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh
Q psy845 601 LWDALEKSHLKSKVVTM-RSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 601 I~~Al~~a~l~efI~~L-P~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+.+.... ..+.+... ..+.+..+ .....+......+...|.++.+++..
T Consensus 87 ~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (189)
T d2i3ba1 87 FEQLALP--VLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTI 138 (189)
T ss_dssp HHTTTTT--TTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCC
T ss_pred HHHHHHH--HHHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceE
Confidence 2211110 11111111 12233333 34455666677788888888777644
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.71 E-value=0.052 Score=50.11 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=23.1
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
++-.-.|.=|.|.|+||+||||+.-.|..
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 33345688999999999999999866654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.64 E-value=0.036 Score=54.04 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.9
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
++++..+-+.||+|+|||++++.+++...
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44566699999999999999999999763
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.62 E-value=0.034 Score=53.75 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
..+-+.||+|+|||++++.+++-.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 468899999999999999999853
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.61 E-value=0.036 Score=51.71 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=27.1
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEeccc
Q psy845 467 IGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIAS 504 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~ 504 (677)
+-+.||+|+||||+++++++-.... ...+.++..|.+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~ 79 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG 79 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS
T ss_pred EEEECCCCCCchhhHHHHHHHHhccccccccccccccccCC
Confidence 6799999999999999998753321 2355666655543
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.58 E-value=0.039 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.|+|=|+-||||||++++|..-+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478999999999999999998755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.56 E-value=0.027 Score=54.57 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=17.9
Q ss_pred cccccccCCCCCchhHHHHHH
Q psy845 524 FNGIVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~ 544 (677)
++..+|+|||||||++.||..
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 456789999999999999944
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.56 E-value=0.029 Score=49.33 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=33.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHH-hcCCCCCcc-EEE-ECCEecccc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVAL-FRLVELSSG-QIK-IDDFDIASV 505 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL-~r~y~p~~G-~I~-IdG~dI~~l 505 (677)
+.|=.+-+-|-|||||||+.+.| ..+.+-+.| .|. +||.+++++
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~ri 50 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKTEL 50 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHHHH
Confidence 45778999999999999999888 677665655 666 477665543
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=0.037 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-.|+|+||.++|||||+|.|+|-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999854
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.51 E-value=0.041 Score=54.44 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|||||..-+|||||+|.|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999885
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.45 E-value=0.036 Score=58.40 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
+.+-+|||||||||-|++.|+++.+.- -+..|+...+
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT 86 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT 86 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee
Confidence 479999999999999999999987533 3444444433
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=91.23 E-value=0.056 Score=51.48 Aligned_cols=30 Identities=40% Similarity=0.463 Sum_probs=24.4
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
.++.+ +.||+.+.|.|++|+||||++--++
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHhCC----ccCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45666 3569999999999999999986654
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.17 E-value=0.036 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.+-|.||.|+||||+++.+++-
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999875
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.17 E-value=0.042 Score=51.07 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q psy845 467 IGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+-+.||.|+||||+++++++-
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 779999999999999999985
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=91.07 E-value=0.022 Score=48.00 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=20.9
Q ss_pred EeCCcEEEEEcCCCCChHHHH-HHHhcCC
Q psy845 461 INHGENIGIVGRTGAGKSSLL-VALFRLV 488 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi-~LL~r~y 488 (677)
+++|+.+-|++|+|||||+.+ ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 357999999999999999655 3444433
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=90.82 E-value=6 Score=36.29 Aligned_cols=78 Identities=8% Similarity=-0.001 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccH
Q psy845 231 SVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKE 309 (677)
Q Consensus 231 ~il~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e 309 (677)
.++..+..++..+..-........+..++...+.....+..++..++..+...+..+ ......+.+.-++.-..-..+
T Consensus 145 ~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~Ik~~~~e~~~ 222 (323)
T d2hyda2 145 DCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQG-FLHERVQGISVVKSFAIEDNE 222 (323)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHH-HHHHHhcCCchhhhHhhhccc
Confidence 344444444444433333333333333333444445555555555554444333333 334455666666655554443
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.79 E-value=0.036 Score=56.57 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCChHHHHH-HHhcCCCCCccEEEEC
Q psy845 465 ENIGIVGRTGAGKSSLLV-ALFRLVELSSGQIKID 498 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~-LL~r~y~p~~G~I~Id 498 (677)
.++.|+|+||||||++++ ++.....-..+-|.+|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 579999999999999986 4444444344455554
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.79 E-value=0.035 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+.+.||.|+||||+++.+++-+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999999864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.69 E-value=0.057 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.-+-+.||+|+|||++++.+++..
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEecCCCCChhHHHHHHHHHc
Confidence 348899999999999999999865
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=90.59 E-value=0.038 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=18.6
Q ss_pred cccccCCCCCchhHHHHHHhhhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL 548 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~ 548 (677)
+.+|-+|||||||++.|.+-...
T Consensus 6 ~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 6 AFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH
Confidence 34688999999999999875543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.37 E-value=0.063 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-+-+.||+|+|||++++.+++..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 48899999999999999999954
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.34 E-value=0.1 Score=50.77 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++||||-.-+|||||++.|.+-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999999953
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.20 E-value=0.063 Score=53.23 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=26.3
Q ss_pred eeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 457 VSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 457 ISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.=+.+-+|++++|.|++|+|||||+.-+++
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999777764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.12 E-value=0.053 Score=53.19 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=33.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECCEe
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDFD 501 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG~d 501 (677)
=+++|..+-+.||+||||||+.--++.-..-..| -+++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 4789999999999999999998777776654444 46777654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.95 E-value=0.066 Score=47.87 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC---CCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL---VELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~---y~p~~G 493 (677)
|+.++|.+|+|||||++-+..- |.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 7899999999999999988543 334445
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.85 E-value=0.11 Score=50.01 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=21.7
Q ss_pred eeEEeCC-cEEEEEcCCCCChHHHHHHHh
Q psy845 458 SFRINHG-ENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 458 Sl~I~~G-E~VAIVGpSGSGKSTLi~LL~ 485 (677)
++++.++ ...-|.||+.|||||++|.+.
T Consensus 34 di~l~~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 34 PLNLSPQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred eEEECCCceEEEEeccCchhhHHHHHHHH
Confidence 4455554 567889999999999999863
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.39 E-value=0.076 Score=53.03 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
...+.++||||+|||.|++.|++.+. .--+.+|.-+
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~s~ 87 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSE 87 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGGG
T ss_pred ceEEEEECCCcchhHHHHHHHHhhcc--CCeeEecccc
Confidence 33578999999999999999999864 2355555433
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.35 E-value=0.082 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=17.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.+..-|++|||||||+++-.++.
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~ 30 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYA 30 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH
Confidence 45567799999999998865543
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=89.32 E-value=0.036 Score=55.96 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=23.3
Q ss_pred ccCCCCCchhHHHHHHhhhhccccccc
Q psy845 529 GRTGAGKSSLLVALFRLVELSSGQIKI 555 (677)
Q Consensus 529 ~~n~~~~~~~~~~~~~~~~~~~g~i~~ 555 (677)
|.+|||||||+++|++..++++--+-+
T Consensus 173 G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 173 GGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp ESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred eeccccchHHHHHHhhhcccccceeec
Confidence 889999999999999999987654444
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.84 E-value=0.092 Score=51.90 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=24.0
Q ss_pred EEEEEcCCCCChHHHHHHHh---cCCCCCccEEEECCEecccccHHHhhhhccccc
Q psy845 466 NIGIVGRTGAGKSSLLVALF---RLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~---r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~ 518 (677)
.+||+|+.|||||||+..|+ |..+ ..|++. +|....+..+++..|+++.-.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~ 61 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITA 61 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCcccc
Confidence 58999999999999999985 3332 234443 444455556666666666543
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.78 E-value=0.083 Score=49.38 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
.||++|+.+||||||++.|++
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 589999999999999999964
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.76 E-value=0.052 Score=54.26 Aligned_cols=19 Identities=42% Similarity=0.871 Sum_probs=17.1
Q ss_pred cccccccCCCCCchhHHHH
Q psy845 524 FNGIVGRTGAGKSSLLVAL 542 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~ 542 (677)
++..+|+|||||||++.||
T Consensus 27 l~~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 27 FTSIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3667899999999999998
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=88.46 E-value=0.083 Score=52.31 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=29.2
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~ 494 (677)
=+.+-+|++++|+|++|+|||+|+..+..-..-+...
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v 97 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 97 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence 4688999999999999999999998765544444443
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=88.28 E-value=0.058 Score=53.63 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
|..+-++||.|+||||+++.+.++.+|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 457999999999999999999987754
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.17 E-value=0.11 Score=47.97 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+|.=.+||+|.-.+|||||++.|++...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 3444699999999999999999998543
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.82 E-value=0.081 Score=52.13 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=33.4
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE-EEECCEe
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ-IKIDDFD 501 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~-I~IdG~d 501 (677)
=++.|..+-+.||+||||||+.-.++.-..-.+|. |+||...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 47889999999999999999987777766555664 6677654
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=87.61 E-value=10 Score=34.51 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchh--HHhhhHHHHHHHhh
Q psy845 163 LLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLL--IITTLYHLISKVFR 225 (677)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~~~~--~~t~~~~~i~~v~~ 225 (677)
+++...+.+.++...+.+......+++..++-......- .+.|.. --...++.+++...
T Consensus 61 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~l----l~~~~~~~~~~~~g~~~~~~~~ 121 (319)
T d3b60a2 61 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHM----MGMPVAFFDKQSTGTLLSRITY 121 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCCSTHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhccccchhhHHHHhh----cccchhhccccccccccccccc
Confidence 344456777788888899999999988888777655532 244532 22444555555443
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.57 E-value=0.18 Score=51.02 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=26.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
+|.|=|+-|+||||+++.|..-+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 67888999999999999999987665554444
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.29 E-value=0.094 Score=46.43 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=23.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhcc---cccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSS---GQIKIDDF 558 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~---g~i~~~~~ 558 (677)
+.+|-+|||||||+..|.+..+... |-|+-|+.
T Consensus 5 ~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 5 QVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 3568899999999999998777542 34444443
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.21 E-value=0.13 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
...++|+|..|.|||||++.+.+
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=87.20 E-value=0.19 Score=47.95 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=21.1
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
++++. ++.+-|.||+.+||||++|.+.
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHH
T ss_pred eEEeC-CcEEEEECCCccccchhhhhhH
Confidence 33443 3578999999999999999764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=86.89 E-value=0.092 Score=45.20 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=16.1
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|+.|||||||++.+.+
T Consensus 10 ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 10 ILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 579999999999999875
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.81 E-value=0.076 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.5
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHh
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
-.|+-+.+++|||+|||+..-+..
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHHH
Confidence 368999999999999998655443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=86.76 E-value=0.53 Score=39.99 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.4
Q ss_pred cccCCCCCchhHHHHHH
Q psy845 528 VGRTGAGKSSLLVALFR 544 (677)
Q Consensus 528 ~~~n~~~~~~~~~~~~~ 544 (677)
.|-+|||||||++.|.+
T Consensus 8 ~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 8 IGCPGSGKSTWAREFIA 24 (152)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 47899999999998754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.75 E-value=0.064 Score=47.02 Aligned_cols=18 Identities=39% Similarity=0.528 Sum_probs=16.0
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.||+.|||||||+.+|.+
T Consensus 18 lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 18 FLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp EEEETTSSHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 479999999999999865
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=86.53 E-value=0.17 Score=51.09 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=26.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
+|.|=|+-||||||+++.|...+......+.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 58899999999999999999987655445544
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.52 E-value=0.14 Score=52.21 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=32.9
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE-EECCEeccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI-KIDDFDIAS 504 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I-~IdG~dI~~ 504 (677)
.++++..+.+.||.|+||||+.+.|+++.. |.+ .+|+-+.++
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~rs 192 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLDRL 192 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTTTH
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcchhh
Confidence 357788999999999999999999999864 443 456655543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=86.33 E-value=0.094 Score=46.83 Aligned_cols=19 Identities=47% Similarity=0.782 Sum_probs=17.5
Q ss_pred cccccCCCCCchhHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~ 544 (677)
+.+|+.|+|||||+++|++
T Consensus 12 ~iiG~~~~GKSTLin~l~~ 30 (186)
T d1mkya2 12 AIVGRPNVGKSTLFNAILN 30 (186)
T ss_dssp EEECSTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHC
Confidence 6689999999999999986
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.30 E-value=0.14 Score=51.09 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC-CCCccEEEECCEec
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV-ELSSGQIKIDDFDI 502 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y-~p~~G~I~IdG~dI 502 (677)
-.+.++||||+|||.+++.|+... .....-+.+|..+.
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~ 92 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 92 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred eEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 357899999999999999999864 33445666765443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.29 E-value=0.15 Score=47.97 Aligned_cols=32 Identities=31% Similarity=0.232 Sum_probs=23.2
Q ss_pred EEEEcCCCCChHHHHHHHhcCCC-CCccEEEEC
Q psy845 467 IGIVGRTGAGKSSLLVALFRLVE-LSSGQIKID 498 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~y~-p~~G~I~Id 498 (677)
+-|.||+|+|||-|++.++.-.. .....++++
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~ 71 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 71 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhccCccceEEec
Confidence 68999999999999999886432 223344443
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.18 E-value=0.088 Score=46.73 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=16.4
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|.++||||||+++|.+
T Consensus 5 lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 5 FAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEBTTSSHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 479999999999999986
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.17 E-value=0.14 Score=52.31 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id 498 (677)
.+-++||||+|||-|++.|+++.+ ..-+.+|
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~~--~~~ir~D 100 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHLD--IPIAISD 100 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred ceeeeCCCCccHHHHHHHHHhhcc--cceeehh
Confidence 477899999999999999999863 2344444
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.95 E-value=0.14 Score=46.62 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=39.0
Q ss_pred cccCCCCCchhHHHHHHhh-------------hhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 528 VGRTGAGKSSLLVALFRLV-------------ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 528 ~~~n~~~~~~~~~~~~~~~-------------~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
+|.+||||+||++.|+.-. +|-.||. ||.|+.-.+.++..+.+. ++-++..+....|
T Consensus 7 ~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~~~~~---~g~f~e~~~~~g~ 76 (186)
T d1gkya_ 7 SGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGN 76 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCHHHHHHHHH---TTCEEEEEEETTE
T ss_pred ECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc--CCccceeccHHHHHHHHh---cccceeeeEEccc
Confidence 5899999999999997643 3346654 788888887777665543 4555555554444
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.73 E-value=0.11 Score=45.93 Aligned_cols=18 Identities=56% Similarity=0.800 Sum_probs=16.5
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|..++|||||+++|.|
T Consensus 10 iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 10 IVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EECSSSSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999999986
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.42 E-value=0.12 Score=43.90 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=16.2
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|+++||||||+..|.+
T Consensus 5 liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 5 FLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 479999999999999886
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.32 E-value=0.15 Score=49.94 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=32.7
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECCE
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDF 500 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG~ 500 (677)
=++.|..+-+-||+||||||+...++.-..-.+| -+++|..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3788999999999999999999888876654444 5666654
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=85.23 E-value=0.32 Score=46.62 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=28.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECCE
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDF 500 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG~ 500 (677)
+.++.|.|.|+.|+||+++++.|-..-....+ -+.+|..
T Consensus 21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~ 60 (247)
T d1ny5a2 21 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVA 60 (247)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETT
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhh
Confidence 34667899999999999999999876554443 4444443
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=85.19 E-value=0.13 Score=44.06 Aligned_cols=18 Identities=39% Similarity=0.552 Sum_probs=15.9
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|+.|||||||++.|.+
T Consensus 5 lvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 5 MVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 369999999999999875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.02 E-value=0.22 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
...+.+|||+|.|||+++.-+++
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHH
Confidence 34788999999999999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=84.91 E-value=0.12 Score=46.82 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=17.7
Q ss_pred cccccCCCCCchhHHHHHHh
Q psy845 526 GIVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~ 545 (677)
+.+|..|||||||++.|.|-
T Consensus 27 ~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 27 ALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEBTTSSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHhcCC
Confidence 46799999999999999973
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.71 E-value=0.12 Score=51.23 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=25.0
Q ss_pred eeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 457 VSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 457 ISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
.=+.+-+|++++|.|++|+||||++.-+.
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 35689999999999999999999976554
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.50 E-value=0.26 Score=45.79 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
...+-+.||.|+||||+++.+++.+
T Consensus 24 ~h~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 24 HHALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHhc
Confidence 3358999999999999999988754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=84.50 E-value=0.2 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
=.+|++|.-++|||||++.|.+.
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Confidence 35899999999999999999863
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=84.27 E-value=0.13 Score=44.64 Aligned_cols=18 Identities=67% Similarity=0.767 Sum_probs=16.2
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|+.++|||||+++|.+
T Consensus 6 lvG~~nvGKSsLin~l~~ 23 (161)
T d2gj8a1 6 IAGRPNAGKSSLLNALAG 23 (161)
T ss_dssp EEESTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 479999999999999985
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.27 E-value=0.25 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.+-+.||+|+||||+++++++...
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 477899999999999999887543
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.91 E-value=0.34 Score=43.36 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=17.5
Q ss_pred ccccCCCCCchhHHHHHHhhh
Q psy845 527 IVGRTGAGKSSLLVALFRLVE 547 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~ 547 (677)
++|-+|+|||||+++|.+-..
T Consensus 7 l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 7 MVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EECCTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 468899999999999987543
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.89 E-value=0.27 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
..+.+|||+|.|||+++.-|++-
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHHHH
Confidence 36889999999999999999874
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.86 E-value=0.21 Score=50.35 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=28.6
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
-...++| .+-++||+|+|||.+++.|++-..-...-+.++|-++
T Consensus 118 ~~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~ 161 (321)
T d1w44a_ 118 GHRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP 161 (321)
T ss_dssp TEEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCS
T ss_pred hcccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHh
Confidence 3455555 4556899999999999999985421112345555444
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=83.83 E-value=0.078 Score=46.64 Aligned_cols=29 Identities=38% Similarity=0.482 Sum_probs=22.4
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHh
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~ 545 (677)
.|.|...-=+.+|+.+||||||+++|++-
T Consensus 11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCccCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35555455567899999999999999774
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.78 E-value=0.23 Score=50.15 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
-+|+|=|+-||||||+++.|...++
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC---
T ss_pred eEEEEECCcCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998664
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.26 E-value=0.099 Score=45.38 Aligned_cols=19 Identities=47% Similarity=0.693 Sum_probs=16.8
Q ss_pred ccccCCCCCchhHHHHHHh
Q psy845 527 IVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~ 545 (677)
.+|+.++|||||+++|.|-
T Consensus 5 liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 5 IVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EECCHHHHTCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5789999999999999874
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=83.15 E-value=0.15 Score=45.03 Aligned_cols=18 Identities=50% Similarity=0.796 Sum_probs=16.2
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|+.|+|||||++.|+|
T Consensus 5 liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 5 IVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EECCTTSSHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 468999999999999986
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=83.02 E-value=0.16 Score=48.56 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=17.3
Q ss_pred EeCCcEEEEEcCCCCChHH
Q psy845 461 INHGENIGIVGRTGAGKSS 479 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKST 479 (677)
+++|+.+-+.+|||||||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 4679999999999999997
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=82.87 E-value=0.13 Score=44.53 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=16.2
Q ss_pred cccCCCCCchhHHHHHHhh
Q psy845 528 VGRTGAGKSSLLVALFRLV 546 (677)
Q Consensus 528 ~~~n~~~~~~~~~~~~~~~ 546 (677)
.|-.|||||||++.|..-+
T Consensus 13 ~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 13 LGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp ECCTTSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4788999999999997654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.81 E-value=0.23 Score=46.79 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.+.|.|.=||||||+++-+++-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5678999999999999999884
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=82.81 E-value=0.34 Score=46.83 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELS 491 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~ 491 (677)
.+-++++||..-+|||||+|.|.|-....
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~ 139 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIAK 139 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred CceEEEEEecCccchhhhhhhhhccceEE
Confidence 35579999999999999999999965433
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=82.52 E-value=0.12 Score=46.18 Aligned_cols=20 Identities=60% Similarity=0.821 Sum_probs=17.3
Q ss_pred cccccCCCCCchhHHHHHHh
Q psy845 526 GIVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~ 545 (677)
+.+|+.++|||||+++|.+-
T Consensus 5 aivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 5 GLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEECCGGGCHHHHHHHHCSS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 45799999999999999763
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=82.12 E-value=0.18 Score=44.81 Aligned_cols=19 Identities=47% Similarity=0.756 Sum_probs=16.6
Q ss_pred ccccCCCCCchhHHHHHHh
Q psy845 527 IVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~ 545 (677)
.+|+.|+|||||+++|++-
T Consensus 10 lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 10 IVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EECSTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4689999999999999863
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.96 E-value=0.21 Score=44.13 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=19.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL 548 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~ 548 (677)
=|.-|..|||||||+++|......
T Consensus 25 IgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 355688999999999999876553
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=81.66 E-value=0.36 Score=45.64 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHh
Q psy845 467 IGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~ 485 (677)
++++|.-.+|||||++.|+
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999995
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=81.38 E-value=0.2 Score=42.36 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=15.2
Q ss_pred cccCCCCCchhHHHHHHh
Q psy845 528 VGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 528 ~~~n~~~~~~~~~~~~~~ 545 (677)
+|-.||||||+.++|..-
T Consensus 8 ~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 8 VGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 477899999999999653
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.02 E-value=0.16 Score=46.54 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=17.1
Q ss_pred eCCcEEEEEcCCCCChHHHH
Q psy845 462 NHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi 481 (677)
..|+.+-+.+|||||||+..
T Consensus 38 ~~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 38 FSGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TTCSCEEEECSSHHHHHHHH
T ss_pred HcCCCEEEEcCCCCchhHHH
Confidence 35788899999999999875
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=80.78 E-value=0.13 Score=45.94 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=16.9
Q ss_pred cccccCCCCCchhHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~ 544 (677)
+.+|..++|||||+++|.+
T Consensus 5 aiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 5 GLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEESSTTSSHHHHHHHSEE
T ss_pred EEECCCCCCHHHHHHHHhC
Confidence 4679999999999999976
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.59 E-value=0.24 Score=44.57 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=16.1
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|+.+||||||++.|.+
T Consensus 8 lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 8 IAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999999985
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=80.51 E-value=0.39 Score=45.03 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~ 485 (677)
.+|++|..++|||||+..|+
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 58999999999999998885
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.37 E-value=0.3 Score=44.66 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=17.1
Q ss_pred cccccCCCCCchhHHHHHHhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLV 546 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~ 546 (677)
|.-|..||||||+.++|....
T Consensus 6 gI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 6 GVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEECSTTSSHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 344889999999999997654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.32 E-value=0.24 Score=43.41 Aligned_cols=18 Identities=44% Similarity=0.848 Sum_probs=16.0
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|+.|+|||||++.+.+
T Consensus 7 vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 7 LIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHh
Confidence 469999999999999875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=80.28 E-value=0.22 Score=43.55 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=15.7
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|+.|||||||+..|.+
T Consensus 20 vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 20 IVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEESTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 468999999999998875
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.08 E-value=0.26 Score=43.69 Aligned_cols=18 Identities=50% Similarity=0.811 Sum_probs=15.6
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|+.|||||||++.+..
T Consensus 8 vvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 8 IIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EESSTTSSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHhc
Confidence 359999999999998874
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.07 E-value=0.26 Score=43.50 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=16.0
Q ss_pred ccccCCCCCchhHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFR 544 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~ 544 (677)
.+|+.|+|||||++.+.+
T Consensus 10 vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 10 IIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHc
Confidence 469999999999999875
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=80.05 E-value=0.22 Score=47.85 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.1
Q ss_pred ccccCCCCCchhHHHHHHh
Q psy845 527 IVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~ 545 (677)
.+|++|+|||||++.|+|-
T Consensus 37 LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 37 VMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEESTTSSHHHHHHHHHTS
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 4699999999999999973
|