Psyllid ID: psy8498

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MDLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHcccEcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdldnvelssdksfsYTVAENCFMEALSKVKQLGgeiiadkwepLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL
Flexible Loop (DISEMBL)
mdldnvelssdksfsYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL
Low Complexity Region (SEG)
MDLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL
Disordered region (IsUnstruct)
*************FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK****
Disordered Region (DISOPRED)
MDLDNVELSSDKSFSYTVAENCFMEALSKVKQ*****IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL
Disordered Region (DISEMBL)
***********KSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL
Disordered Region (DISPRO)
****NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNxxxxxxxxxxxxxxxxxxxxxLVVAPMKASTFCCIVVKEGVL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q13042	620	Cell division cycle prote	yes	N/A	0.755	0.109	0.602	3e-19
Q8R349	620	Cell division cycle prote	yes	N/A	0.755	0.109	0.602	4e-19

>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct: 418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 477

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 478 NASTYSAI 485

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.
Homo sapiens (taxid: 9606)

>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct: 418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 477

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 478 NASTYSAI 485

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
47220146	453	unnamed protein product [Tetraodon nigro	0.788	0.156	0.591	6e-19
57525501	624	cell division cycle protein 16 homolog [	0.755	0.108	0.647	6e-19
224042879	623	PREDICTED: cell division cycle protein 1	0.755	0.109	0.632	1e-18
449279387	611	Cell division cycle protein 16 like prot	0.755	0.111	0.632	1e-18
126337239	623	PREDICTED: cell division cycle protein 1	0.755	0.109	0.632	1e-18
395527224	623	PREDICTED: cell division cycle protein 1	0.755	0.109	0.632	1e-18
327268036	593	PREDICTED: cell division cycle protein 1	0.755	0.114	0.632	1e-18
410896360	618	PREDICTED: cell division cycle protein 1	0.755	0.110	0.617	1e-18
326913849	749	PREDICTED: cell division cycle protein 1	0.755	0.090	0.647	2e-18
86169679	616	cell division cycle 16 [Danio rerio]	0.755	0.110	0.602	2e-18

>gi|47220146|emb|CAG07287.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 54/71 (76%)

Query: 13  SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
           +  +  AE  F+EA+ K+K +G E+  DKWEPLLNNLGHV RKLKKYE+ALE+H+QALV+
Sbjct: 317 TLGWKAAERYFLEAMEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYEQALEYHRQALVL 376

Query: 73  APMKASTFCCI 83
            P  AST+  I
Sbjct: 377 IPQHASTYSAI 387

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|57525501|ref|NP_001006265.1| cell division cycle protein 16 homolog [Gallus gallus] gi|53134012|emb|CAG32294.1| hypothetical protein RCJMB04_22d11 [Gallus gallus]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 53/68 (77%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G EI  DKWEPLLNNLGHV RKLKKYEEALE+H+QALV+ P 
Sbjct: 420 WKTAEKWFLDALEKIKAIGNEITVDKWEPLLNNLGHVCRKLKKYEEALEYHRQALVLIPQ 479

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 480 NASTYSAI 487

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224042879|ref|XP_002192730.1| PREDICTED: cell division cycle protein 16 homolog [Taeniopygia guttata]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 53/68 (77%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKYEEALE+H+QALV+ P 
Sbjct: 419 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYEEALEYHRQALVLIPQ 478

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 479 NASTYSAI 486

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449279387|gb|EMC86990.1| Cell division cycle protein 16 like protein [Columba livia]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 53/68 (77%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKYEEALE+H+QALV+ P 
Sbjct: 407 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYEEALEYHRQALVLIPQ 466

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 467 NASTYSAI 474

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126337239|ref|XP_001364596.1| PREDICTED: cell division cycle protein 16 homolog [Monodelphis domestica]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 53/68 (77%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKYEEALE+H+QALV+ P 
Sbjct: 418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYEEALEYHRQALVLIPQ 477

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 478 NASTYSAI 485

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395527224|ref|XP_003765750.1| PREDICTED: cell division cycle protein 16 homolog [Sarcophilus harrisii]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 53/68 (77%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKYEEALE+H+QALV+ P 
Sbjct: 418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYEEALEYHRQALVLIPQ 477

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 478 NASTYSAI 485

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327268036|ref|XP_003218804.1| PREDICTED: cell division cycle protein 16 homolog [Anolis carolinensis]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 53/68 (77%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKYEEALE+H+QALV+ P 
Sbjct: 389 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYEEALEYHRQALVLIPQ 448

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 449 NASTYSAI 456

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410896360|ref|XP_003961667.1| PREDICTED: cell division cycle protein 16 homolog [Takifugu rubripes]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 53/68 (77%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F+EA+ K+K +G E+  DKWEPLLNNLGHV RKLKKYE+ALE+H+QALV+ P 
Sbjct: 419 WKAAERYFLEAMEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYEQALEYHRQALVLIPQ 478

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 479 HASTYSAI 486

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326913849|ref|XP_003203245.1| PREDICTED: cell division cycle protein 16 homolog [Meleagris gallopavo]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/68 (64%), Positives = 53/68 (77%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G EI  DKWEPLLNNLGHV RKLKKYEEALE+H+QALV+ P 
Sbjct: 545 WKTAEKWFLDALEKIKAIGNEITVDKWEPLLNNLGHVCRKLKKYEEALEYHRQALVLIPQ 604

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 605 NASTYSAI 612

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|86169679|gb|ABC87083.1| cell division cycle 16 [Danio rerio]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 53/68 (77%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           Y  +E  F++A+ K+K +G E+  DKWEPLLNNLGHV RKLKKYE+ALE+H+QALV+ P 
Sbjct: 419 YKTSEKLFLDAMEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYEQALEYHRQALVLIPQ 478

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 479 NASTYSAI 486

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
UNIPROTKB|F1P4A5	623	CDC16 "Uncharacterized protein	0.755	0.109	0.647	5.1e-19
ZFIN|ZDB-GENE-051113-132	616	cdc16 "cell division cycle 16	0.755	0.110	0.602	1.1e-18
UNIPROTKB|Q7Z651	526	CDC16 "CDC16 cell division cyc	0.755	0.129	0.602	4.3e-18
UNIPROTKB|E1BPM5	620	CDC16 "Uncharacterized protein	0.755	0.109	0.602	6.1e-18
UNIPROTKB|E2R5H6	620	CDC16 "Uncharacterized protein	0.755	0.109	0.602	6.1e-18
UNIPROTKB|Q13042	620	CDC16 "Cell division cycle pro	0.755	0.109	0.602	6.1e-18
UNIPROTKB|I3L944	620	CDC16 "Uncharacterized protein	0.755	0.109	0.602	6.1e-18
MGI|MGI:1917207	620	Cdc16 "CDC16 cell division cyc	0.755	0.109	0.602	6.1e-18
RGD|1305076	620	Cdc16 "cell division cycle 16"	0.755	0.109	0.602	6.1e-18
FB|FBgn0025781	719	Cdc16 "Cell division cycle 16	0.688	0.086	0.387	3.9e-06

UNIPROTKB|F1P4A5 CDC16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 237 (88.5 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/68 (64%), Positives = 53/68 (77%)

Query:    16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
             +  AE  F++AL K+K +G EI  DKWEPLLNNLGHV RKLKKYEEALE+H+QALV+ P 
Sbjct:   419 WKTAEKWFLDALEKIKAIGNEITVDKWEPLLNNLGHVCRKLKKYEEALEYHRQALVLIPQ 478

Query:    76 KASTFCCI 83
              AST+  I
Sbjct:   479 NASTYSAI 486

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

ZFIN|ZDB-GENE-051113-132 cdc16 "cell division cycle 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 234 (87.4 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 41/68 (60%), Positives = 53/68 (77%)

Query:    16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
             Y  +E  F++A+ K+K +G E+  DKWEPLLNNLGHV RKLKKYE+ALE+H+QALV+ P 
Sbjct:   419 YKTSEKLFLDAMEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYEQALEYHRQALVLIPQ 478

Query:    76 KASTFCCI 83
              AST+  I
Sbjct:   479 NASTYSAI 486

GO:0007049 "cell cycle" evidence=IMP

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q7Z651 CDC16 "CDC16 cell division cycle 16 homolog (S. cerevisiae), isoform CRA_h" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 4.3e-18, P = 4.3e-18
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query:    16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
             +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct:   324 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 383

Query:    76 KASTFCCI 83
              AST+  I
Sbjct:   384 NASTYSAI 391

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BPM5 CDC16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query:    16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
             +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct:   418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 477

Query:    76 KASTFCCI 83
              AST+  I
Sbjct:   478 NASTYSAI 485

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|E2R5H6 CDC16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 227 (85.0 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query:    16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
             +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct:   418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 477

Query:    76 KASTFCCI 83
              AST+  I
Sbjct:   478 NASTYSAI 485

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|Q13042 CDC16 "Cell division cycle protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query:    16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
             +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct:   418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 477

Query:    76 KASTFCCI 83
              AST+  I
Sbjct:   478 NASTYSAI 485

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0005819 "spindle" evidence=TAS

GO:0007088 "regulation of mitosis" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005813 "centrosome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3L944 CDC16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 227 (85.0 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query:    16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
             +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct:   418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 477

Query:    76 KASTFCCI 83
              AST+  I
Sbjct:   478 NASTYSAI 485

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

MGI|MGI:1917207 Cdc16 "CDC16 cell division cycle 16" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query:    16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
             +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct:   418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 477

Query:    76 KASTFCCI 83
              AST+  I
Sbjct:   478 NASTYSAI 485

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

RGD|1305076 Cdc16 "cell division cycle 16" [Rattus norvegicus (taxid:10116)]

 Score = 227 (85.0 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query:    16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
             +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct:   418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 477

Query:    76 KASTFCCI 83
              AST+  I
Sbjct:   478 NASTYSAI 485

GO:0005634 "nucleus" evidence=ISO

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

FB|FBgn0025781 Cdc16 "Cell division cycle 16 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 118 (46.6 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query:    22 CFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
             C ++ + +  +   E I+ +WEPL  NLGH  RK+ KYEEAL   + AL++ P   +T+ 
Sbjct:   554 CTVDIVKQRAKSNNEEISSRWEPLFINLGHSLRKVHKYEEALYNFQYALLLKPQSPTTYT 613

Query:    82 CI 83
              I
Sbjct:   614 SI 615

GO:0005680 "anaphase-promoting complex" evidence=ISS;NAS

GO:0000090 "mitotic anaphase" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0007049 "cell cycle" evidence=IMP

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0045842 "positive regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0090302 "mitotic anaphase-promoting complex activity" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R349	CDC16_MOUSE	No assigned EC number	0.6029	0.7555	0.1096	yes	N/A
Q13042	CDC16_HUMAN	No assigned EC number	0.6029	0.7555	0.1096	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	90
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	1e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-05
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	6e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.003

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 38.2 bits (90), Expect = 1e-05
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
          L NLG+   KL  Y+EALE++++AL + P
Sbjct: 4  LYNLGNAYLKLGDYDEALEYYEKALELDP 32

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 16 YTVAENCFMEALSKVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
          Y  A     +AL   ++LG +    A      LNNL  +   L  Y+EALE+ ++AL
Sbjct: 21 YDEALELLEKALELARELGEDHPETAR----ALNNLARLYLALGDYDEALEYLEKAL 73

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 2e-05
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
          L NLG+   KL KY+EALE++++AL + P
Sbjct: 4  LYNLGNAYLKLGKYDEALEYYEKALELNP 32

Length = 34

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 34.1 bits (79), Expect = 6e-04
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
          LNNL    R   +YEEA E  ++AL
Sbjct: 5  LNNLARALRAQGRYEEAEELLEEAL 29

Length = 42

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 45 LLNNLGHVNRKLKKYEEALEFHKQAL 70
           LNNL  V R+L  Y+EALE  ++AL
Sbjct: 7  ALNNLALVLRRLGDYDEALELLEKAL 32

Length = 78

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 31.7 bits (73), Expect = 0.003
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
           L NLG    KL  YEEALE +++AL + P
Sbjct: 3  ALYNLGLAYYKLGDYEEALEAYEKALELDP 32

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.61
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.6
PRK15359	144	type III secretion system chaperone protein SscB;	99.54
PRK15359	144	type III secretion system chaperone protein SscB;	99.54
KOG1173|consensus	611		99.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.51
KOG4626|consensus	966		99.5
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.5
KOG4626|consensus	966		99.48
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.39
PRK11189	296	lipoprotein NlpI; Provisional	99.38
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.38
PF13371	73	TPR_9: Tetratricopeptide repeat	99.35
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.34
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.32
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.3
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.29
KOG0553|consensus	304		99.27
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.27
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.25
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.25
KOG0553|consensus	304		99.24
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.22
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.21
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.19
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.18
PRK11189	296	lipoprotein NlpI; Provisional	99.18
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.18
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.18
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.13
KOG1126|consensus	638		99.13
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.13
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.12
PRK12370	553	invasion protein regulator; Provisional	99.11
KOG1125|consensus	579		99.11
KOG1173|consensus	611		99.09
KOG1155|consensus	559		99.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.05
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.04
KOG0543|consensus	397		99.03
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.02
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.02
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.01
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.0
PRK12370	553	invasion protein regulator; Provisional	99.0
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.98
KOG4555|consensus	175		98.95
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.95
KOG1126|consensus	638		98.95
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.94
PRK15331	165	chaperone protein SicA; Provisional	98.94
KOG1840|consensus	508		98.93
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.92
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.92
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.92
PF13428	44	TPR_14: Tetratricopeptide repeat	98.91
KOG1840|consensus	508		98.91
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.91
PF12688	120	TPR_5: Tetratrico peptide repeat	98.91
KOG0543|consensus	397		98.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.9
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.86
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.86
KOG0547|consensus	606		98.85
PRK10803	263	tol-pal system protein YbgF; Provisional	98.84
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.84
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.81
KOG0548|consensus	539		98.8
PRK10803	263	tol-pal system protein YbgF; Provisional	98.8
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.79
KOG1129|consensus	478		98.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.79
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.79
KOG1155|consensus	559		98.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.76
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.76
PF13512	142	TPR_18: Tetratricopeptide repeat	98.76
KOG2002|consensus	1018		98.74
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.73
KOG0548|consensus	539		98.73
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.69
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.67
KOG4234|consensus	271		98.61
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.59
KOG0550|consensus	486		98.59
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.58
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.58
PLN02789	320	farnesyltranstransferase	98.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	98.56
KOG2003|consensus	840		98.55
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.54
KOG1125|consensus	579		98.54
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.53
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.53
KOG0547|consensus	606		98.52
KOG2002|consensus	1018		98.51
PRK15331	165	chaperone protein SicA; Provisional	98.51
PF13431	34	TPR_17: Tetratricopeptide repeat	98.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	98.5
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.46
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.46
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.46
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.45
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.45
KOG1130|consensus	639		98.44
KOG2003|consensus	840		98.44
KOG1129|consensus	478		98.43
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.39
KOG2076|consensus	895		98.37
KOG3060|consensus	289		98.36
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.35
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.35
PLN02789	320	farnesyltranstransferase	98.32
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.32
KOG4648|consensus	536		98.32
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.31
PF13428	44	TPR_14: Tetratricopeptide repeat	98.31
KOG4234|consensus	271		98.3
PRK14574	822	hmsH outer membrane protein; Provisional	98.28
KOG4162|consensus	799		98.27
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.27
PF12688	120	TPR_5: Tetratrico peptide repeat	98.26
KOG1156|consensus	700		98.25
KOG4162|consensus	799		98.25
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.25
KOG0545|consensus	329		98.22
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.21
KOG1128|consensus	777		98.2
KOG1156|consensus	700		98.19
KOG0551|consensus	390		98.17
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.17
KOG2076|consensus	895		98.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.14
KOG1130|consensus	639		98.14
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	98.14
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.13
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.12
KOG3824|consensus	472		98.11
KOG4642|consensus	284		98.11
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	98.1
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	98.1
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.1
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.09
PRK14574	822	hmsH outer membrane protein; Provisional	98.08
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.06
PRK10941	269	hypothetical protein; Provisional	98.06
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.05
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.03
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.01
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.0
KOG0624|consensus	504		98.0
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.0
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.0
KOG1174|consensus	564		97.99
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.99
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.98
KOG1127|consensus	1238		97.98
PF13371	73	TPR_9: Tetratricopeptide repeat	97.98
KOG2471|consensus	696		97.97
PF13431	34	TPR_17: Tetratricopeptide repeat	97.9
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.89
PRK11906	458	transcriptional regulator; Provisional	97.88
PF13512	142	TPR_18: Tetratricopeptide repeat	97.87
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.82
KOG1941|consensus	518		97.81
KOG4555|consensus	175		97.8
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.78
KOG3060|consensus	289		97.78
KOG1127|consensus	1238		97.78
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.76
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.75
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.74
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.73
KOG0550|consensus	486		97.72
KOG2376|consensus	652		97.72
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.7
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.69
PRK11906	458	transcriptional regulator; Provisional	97.67
KOG1941|consensus	518		97.66
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.63
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.6
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.57
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.57
PRK04841	903	transcriptional regulator MalT; Provisional	97.52
KOG1128|consensus	777		97.51
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.5
PRK04841	903	transcriptional regulator MalT; Provisional	97.48
KOG0624|consensus	504		97.46
KOG3785|consensus	557		97.44
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	97.43
KOG3785|consensus	557		97.43
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.41
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.39
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.35
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.29
KOG4648|consensus	536		97.29
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.24
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.21
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.19
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.17
KOG3364|consensus	149		97.15
KOG1174|consensus	564		97.15
KOG0495|consensus	913		97.12
KOG4340|consensus	459		97.09
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	97.07
KOG4340|consensus	459		97.06
KOG0545|consensus	329		97.04
KOG4814|consensus	872		97.03
KOG1586|consensus	288		97.03
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.01
KOG0495|consensus	913		96.96
KOG0376|consensus	476		96.94
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.93
PLN03218	1060	maturation of RBCL 1; Provisional	96.93
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.93
KOG4507|consensus	886		96.9
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.87
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	96.87
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.84
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.82
PLN03077	857	Protein ECB2; Provisional	96.82
KOG4642|consensus	284		96.78
KOG2053|consensus	932		96.77
KOG1308|consensus	377		96.77
KOG1586|consensus	288		96.74
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	96.72
KOG2796|consensus	366		96.71
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.7
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.69
KOG0376|consensus	476		96.64
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.6
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.57
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.52
KOG1585|consensus	308		96.52
PLN03218	1060	maturation of RBCL 1; Provisional	96.49
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.48
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.48
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.46
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.34
KOG3081|consensus	299		96.27
COG2912	269	Uncharacterized conserved protein [Function unknow	96.25
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	96.24
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	96.22
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.16
KOG1585|consensus	308		96.08
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.03
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.0
KOG3081|consensus	299		95.97
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.93
KOG2796|consensus	366		95.92
PLN03077	857	Protein ECB2; Provisional	95.83
PRK10941	269	hypothetical protein; Provisional	95.82
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	95.5
KOG4507|consensus	886		95.5
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.5
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.44
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.43
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.43
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	95.4
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	95.39
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.3
KOG0551|consensus	390		95.23
PF12854	34	PPR_1: PPR repeat	95.22
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.99
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.92
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.83
KOG3783|consensus	546		94.73
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.63
KOG1550|consensus	552		94.63
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.62
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.59
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	94.57
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.56
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.46
PF04212	69	MIT: MIT (microtubule interacting and transport) d	94.42
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.33
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.29
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	94.2
KOG2709|consensus	560		94.18
KOG2581|consensus	493		94.11
KOG2610|consensus	491		94.09
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.04
KOG1550|consensus	552		94.02
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	93.9
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	93.81
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	93.77
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	93.65
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	93.57
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.29
KOG1070|consensus	1710		93.21
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.02
KOG3824|consensus	472		93.02
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	92.95
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	92.94
KOG2376|consensus	652		92.86
PF04212	69	MIT: MIT (microtubule interacting and transport) d	92.76
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.37
KOG2300|consensus	629		91.92
KOG1308|consensus	377		91.7
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	91.69
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	91.68
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	91.57
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.54
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	91.28
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.26
KOG1464|consensus	440		91.13
PHA02537	230	M terminase endonuclease subunit; Provisional	90.98
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	90.81
cd02656	75	MIT MIT: domain contained within Microtubule Inter	90.8
KOG2471|consensus	696		90.61
KOG2114|consensus	933		90.46
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.39
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	90.38
KOG3807|consensus	556		90.37
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	90.3
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.22
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	89.92
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	89.82
COG2912	269	Uncharacterized conserved protein [Function unknow	89.74
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.53
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	89.29
COG3947	361	Response regulator containing CheY-like receiver a	89.09
COG3947	361	Response regulator containing CheY-like receiver a	89.01
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.99
KOG3617|consensus	1416		88.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.94
KOG0546|consensus	372		88.9
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	88.88
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	88.66
KOG2053|consensus	932		88.56
KOG2041|consensus	1189		88.51
KOG2300|consensus	629		88.49
PF13041	50	PPR_2: PPR repeat family	87.66
KOG2047|consensus	835		87.63
KOG1915|consensus	677		87.21
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	87.05
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	86.86
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.69
KOG2610|consensus	491		86.29
KOG2396|consensus	568		86.2
PF13812	34	PPR_3: Pentatricopeptide repeat domain	85.85
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	85.83
KOG1915|consensus	677		85.64
KOG3616|consensus	1636		85.62
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	85.34
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.33
KOG3364|consensus	149		85.26
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	85.0
KOG1310|consensus	758		84.87
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	84.75
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	84.7
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	83.03
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	82.86
PF15469	182	Sec5: Exocyst complex component Sec5	82.47
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	82.42
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	82.07
KOG1839|consensus	1236		81.79
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	80.67
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	80.56

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.61  E-value=6.2e-15  Score=73.93  Aligned_cols=63  Identities=29%  Similarity=0.249  Sum_probs=58.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~   74 (90)
                      +.++|.++...|+|++|+.+|++++++.|..         +.++.++|.++.++| ++++|+.+++++++++|
T Consensus         6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5789999999999999999999999998877         566799999999999 79999999999999987

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.60  E-value=1.4e-14  Score=74.21  Aligned_cols=70  Identities=31%  Similarity=0.389  Sum_probs=59.5

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      .+.++|.+|..+|+|++|+.+|++++++....+++  ....+.+++++|.++..+|++++|++++++++++.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--HPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            46899999999999999999999999996555443  33346688999999999999999999999999863

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.54  E-value=5e-14  Score=80.06  Aligned_cols=73  Identities=16%  Similarity=-0.054  Sum_probs=34.4

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ++|.++...|++++|+.+|++++++.|..         +..++++|.++..+|++++|+..|++++.++|.++..+.+.|
T Consensus        63 ~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         63 ALAGTWMMLKEYTTAINFYGHALMLDASH---------PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            44444444444444444444444443333         222344555555555555555555555555555544444444


Q ss_pred             HH
Q psy8498          85 VK   86 (90)
Q Consensus        85 ~~   86 (90)
                      .+
T Consensus       134 ~~  135 (144)
T PRK15359        134 NA  135 (144)
T ss_pred             HH
Confidence            44

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.54  E-value=1.2e-13  Score=78.53  Aligned_cols=77  Identities=17%  Similarity=-0.004  Sum_probs=70.9

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .+.|.++...|++++|+.+|++++.+.|..         ...++++|.++..+|++++|+..|++++.++|.++.+++++
T Consensus        28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l   98 (144)
T PRK15359         28 YASGYASWQEGDYSRAVIDFSWLVMAQPWS---------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT   98 (144)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            467899999999999999999999998876         55569999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q psy8498          84 VVKEGV   89 (90)
Q Consensus        84 ~~~~~~   89 (90)
                      |.++..
T Consensus        99 g~~l~~  104 (144)
T PRK15359         99 GVCLKM  104 (144)
T ss_pred             HHHHHH
Confidence            998764

>KOG1173|consensus

Probab=99.52  E-value=7.4e-14  Score=92.03  Aligned_cols=86  Identities=38%  Similarity=0.538  Sum_probs=78.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      ++.+|.+....++|.+|..+|++++...+...++  ...|.++.+|||+++++++++++|+.+|+++|.+.|+++.++..
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e--~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~as  494 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE--KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHAS  494 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHH
Confidence            5778999999999999999999999887777555  23788899999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q psy8498          83 IVVKEGVL   90 (90)
Q Consensus        83 l~~~~~~~   90 (90)
                      +|.+|.++
T Consensus       495 ig~iy~ll  502 (611)
T KOG1173|consen  495 IGYIYHLL  502 (611)
T ss_pred             HHHHHHHh
Confidence            99999864

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.51  E-value=3.4e-13  Score=77.19  Aligned_cols=77  Identities=13%  Similarity=-0.023  Sum_probs=70.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..+|..+...|++++|++.|+-+..+.|..     ...|    .+||.+++.+|+|++|+..|.+|..++|+++.++++.
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-----~~y~----~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a  109 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWS-----FDYW----FRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA  109 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHH----HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            456888899999999999999999999887     4455    9999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q psy8498          84 VVKEGV   89 (90)
Q Consensus        84 ~~~~~~   89 (90)
                      |.|+-.
T Consensus       110 g~c~L~  115 (157)
T PRK15363        110 AECYLA  115 (157)
T ss_pred             HHHHHH
Confidence            999864

>KOG4626|consensus

Probab=99.50  E-value=6.9e-14  Score=93.73  Aligned_cols=76  Identities=17%  Similarity=0.224  Sum_probs=43.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      .+|+|.+|.++|++++|+.+|++++++.|..         +..+.|+|++|.++|+.+.|+++|.+|++++|..++++.+
T Consensus       391 ~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f---------Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN  461 (966)
T KOG4626|consen  391 HNNLASIYKQQGNLDDAIMCYKEALRIKPTF---------ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN  461 (966)
T ss_pred             hhhHHHHHHhcccHHHHHHHHHHHHhcCchH---------HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence            4556666666666666666666666665554         3334555555555555555555555555555555555555


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|.+|
T Consensus       462 Lasi~  466 (966)
T KOG4626|consen  462 LASIY  466 (966)
T ss_pred             HHHHh
Confidence            55544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.50  E-value=1e-13  Score=68.79  Aligned_cols=64  Identities=22%  Similarity=0.256  Sum_probs=57.3

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      .+|..+...|++++|+..|+++++..|..         ..++..+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            57899999999999999999999998877         45569999999999999999999999999999875

>KOG4626|consensus

Probab=99.48  E-value=1.8e-13  Score=91.81  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=72.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ++.|+|.+|.++|..++|..+|+++++..|..         +..++|||.+|..+|++++|+.+|++++.+.|..+.++.
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~  426 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS  426 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence            57899999999999999999999999999887         666799999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      ++|.++-
T Consensus       427 NmGnt~k  433 (966)
T KOG4626|consen  427 NMGNTYK  433 (966)
T ss_pred             hcchHHH
Confidence            9998874

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.39  E-value=5.6e-12  Score=73.03  Aligned_cols=81  Identities=20%  Similarity=0.153  Sum_probs=70.2

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.++..+|++++|+.+|++++.+.++..      ..+.++.++|.++...|++++|+.+|++++.++|..+.++.
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~  110 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN  110 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence            357889999999999999999999999865431      11346799999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      ++|.++.
T Consensus       111 ~la~i~~  117 (168)
T CHL00033        111 NMAVICH  117 (168)
T ss_pred             HHHHHHH
Confidence            9988875

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.38  E-value=6.3e-12  Score=78.70  Aligned_cols=77  Identities=17%  Similarity=0.089  Sum_probs=66.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..|++++++.|+.         +..++++|.++...|++++|+..|+++++++|++..++.+
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~  137 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALRPDM---------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLN  137 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4578899999999999999999999988766         4556899999999999999999999999999999888888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       138 lg~~l~  143 (296)
T PRK11189        138 RGIALY  143 (296)
T ss_pred             HHHHHH
Confidence            888764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.38  E-value=1.4e-11  Score=71.63  Aligned_cols=80  Identities=24%  Similarity=0.240  Sum_probs=70.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|..+...|++++|+.+|+++++..++....      ...+.++|.++.+.|++++|+.++++++.+.|.++.++..
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDR------SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            5688999999999999999999999987654211      3467999999999999999999999999999999999988


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       112 lg~~~~  117 (172)
T PRK02603        112 IAVIYH  117 (172)
T ss_pred             HHHHHH
Confidence            888874

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.35  E-value=1.6e-11  Score=61.96  Aligned_cols=71  Identities=21%  Similarity=0.127  Sum_probs=62.2

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      +..+|...++|++|++++++++++.|..         +..+...|.++.++|++++|.+.++++++..|+++.+....+.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDD---------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCccc---------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4578999999999999999999998886         4445899999999999999999999999999988877655443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.34  E-value=2e-11  Score=68.07  Aligned_cols=78  Identities=15%  Similarity=0.052  Sum_probs=66.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|..+...|++++|...|+++++..|..         ...+.++|.++.++|++++|..++++++.++|.++..+..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYN---------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            4567888999999999999999998887655         3445889999999999999999999999999999999988


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        91 la~~~~~   97 (135)
T TIGR02552        91 AAECLLA   97 (135)
T ss_pred             HHHHHHH
Confidence            8888753

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.32  E-value=2.2e-11  Score=73.36  Aligned_cols=76  Identities=18%  Similarity=0.041  Sum_probs=52.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..+|..|...|++..|...+++|+++.|..         ...+..+++.|.++|+.+.|.+.|++|+.++|+++.+++|-
T Consensus        39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~---------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          39 LQLALGYLQQGDYAQAKKNLEKALEHDPSY---------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence            356777777777777777777777777665         33346677777777777777777777777777777777666


Q ss_pred             HHHHh
Q psy8498          84 VVKEG   88 (90)
Q Consensus        84 ~~~~~   88 (90)
                      |...|
T Consensus       110 G~FLC  114 (250)
T COG3063         110 GAFLC  114 (250)
T ss_pred             hHHHH
Confidence            66554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.30  E-value=3.3e-11  Score=77.28  Aligned_cols=76  Identities=17%  Similarity=0.048  Sum_probs=47.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..+++++++.|..         ...++++|.++..+|++++|+..|+++++++|+++.+...
T Consensus        39 ~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  109 (356)
T PLN03088         39 YADRAQANIKLGNFTEAVADANKAIELDPSL---------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3455666666666666666666666665544         3344666666666666666666666666666666666555


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      ++.|.
T Consensus       110 l~~~~  114 (356)
T PLN03088        110 IKECD  114 (356)
T ss_pred             HHHHH
Confidence            55543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.29  E-value=1.8e-11  Score=60.97  Aligned_cols=66  Identities=20%  Similarity=0.090  Sum_probs=56.8

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      ...|+|++|+..|+++++..|++         ..+...+|.++.+.|++++|.+.+++.+..+|+++..+.-++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDN---------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTS---------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            56899999999999999999887         4455899999999999999999999999999988776655543

...

>KOG0553|consensus

Probab=99.27  E-value=6.1e-11  Score=73.61  Aligned_cols=73  Identities=29%  Similarity=0.209  Sum_probs=44.5

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      |-+.+|.+.|+|+.|++-.+.++.+.|..         .+.|.+||.+|.-+|++++|++.|+++|.++|++.....++.
T Consensus       120 NRAAAy~~Lg~~~~AVkDce~Al~iDp~y---------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  120 NRAAAYSKLGEYEDAVKDCESALSIDPHY---------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcChHH---------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence            34445555555555555555555554444         445577777777777777777777777777776665555555


Q ss_pred             HH
Q psy8498          85 VK   86 (90)
Q Consensus        85 ~~   86 (90)
                      .+
T Consensus       191 ~A  192 (304)
T KOG0553|consen  191 IA  192 (304)
T ss_pred             HH
Confidence            44

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.27  E-value=7.7e-11  Score=75.58  Aligned_cols=78  Identities=15%  Similarity=0.138  Sum_probs=70.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +...|......|+|++|+.+|+++++..|..         ...+.++|.++.++|++++|+.++++++.++|.++.+++.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~   75 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR   75 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            3466888999999999999999999998876         5566999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        76 lg~~~~~   82 (356)
T PLN03088         76 KGTACMK   82 (356)
T ss_pred             HHHHHHH
Confidence            9988754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.25  E-value=1e-10  Score=69.72  Aligned_cols=77  Identities=13%  Similarity=0.017  Sum_probs=66.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHH-HHhcC--HHHHHHHHHHHHhhCCCChHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVN-RKLKK--YEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~   79 (90)
                      +..+|.+|...|++++|+..|++++++.|++         ..++..+|.++ ...|+  +++|.+.++++++.+|+++.+
T Consensus        76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a  146 (198)
T PRK10370         76 WALLGEYYLWRNDYDNALLAYRQALQLRGEN---------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTA  146 (198)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence            5688999999999999999999999999877         55568889874 67777  589999999999999999999


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      ++.+|..+.
T Consensus       147 l~~LA~~~~  155 (198)
T PRK10370        147 LMLLASDAF  155 (198)
T ss_pred             HHHHHHHHH
Confidence            998888764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.25  E-value=1.3e-10  Score=59.32  Aligned_cols=78  Identities=28%  Similarity=0.186  Sum_probs=68.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.++...|++++|+..++++++..|..         ...+..+|.++...|++++|++++++++...|.+...+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   72 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN---------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY   72 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHH
Confidence            46789999999999999999999999987654         234588999999999999999999999999998888888


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      .+|.++.
T Consensus        73 ~~~~~~~   79 (100)
T cd00189          73 NLGLAYY   79 (100)
T ss_pred             HHHHHHH
Confidence            8877654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.25  E-value=3.1e-11  Score=72.70  Aligned_cols=76  Identities=20%  Similarity=0.084  Sum_probs=56.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC--CCChHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--PMKASTF   80 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~   80 (90)
                      +.-++.+|...|+.+.|.+.|++|+++.|++         -.++||.|.++|.+|++++|..+|++|+...  +..+.++
T Consensus        72 ~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~---------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~  142 (250)
T COG3063          72 HLVRAHYYQKLGENDLADESYRKALSLAPNN---------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL  142 (250)
T ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHhcCCCc---------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhh
Confidence            4567889999999999999999999998887         2234777777777777777777777776532  3455666


Q ss_pred             HHHHHHH
Q psy8498          81 CCIVVKE   87 (90)
Q Consensus        81 ~~l~~~~   87 (90)
                      -|+|.|-
T Consensus       143 eN~G~Ca  149 (250)
T COG3063         143 ENLGLCA  149 (250)
T ss_pred             hhhHHHH
Confidence            6666664

>KOG0553|consensus

Probab=99.24  E-value=5.1e-11  Score=73.94  Aligned_cols=78  Identities=21%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.+-|.-+.+.++|.+|+..|.+||++.|.+         +..|.+.+-+|.++|.++.|++..+.|++++|....+|..
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~R  154 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---------AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGR  154 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---------chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHH
Confidence            4456778899999999999999999999988         6678999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       155 LG~A~~~  161 (304)
T KOG0553|consen  155 LGLAYLA  161 (304)
T ss_pred             HHHHHHc
Confidence            9998864

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.22  E-value=1.3e-10  Score=82.26  Aligned_cols=78  Identities=10%  Similarity=-0.051  Sum_probs=66.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++.+.|++++|+.+|++++++.|+.         +..++++|.++...|++++|+..|+++++++|+++.++.+
T Consensus       612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n  682 (987)
T PRK09782        612 YVARATIYRQRHNVPAAVSDLRAALELEPNN---------SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ  682 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4678888888999999999999998888776         4556889999999999999999999999999988888888


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       683 LA~al~~  689 (987)
T PRK09782        683 LAYVNQR  689 (987)
T ss_pred             HHHHHHH
Confidence            8888753

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.21  E-value=1.6e-10  Score=78.32  Aligned_cols=42  Identities=7%  Similarity=0.003  Sum_probs=23.1

Q ss_pred             HHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498          46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        46 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      +.++|.++...|++++|+.+|++++.++|++..++..+|.++
T Consensus       402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            355555555555555555555555555555555555555544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.19  E-value=1.9e-10  Score=65.95  Aligned_cols=63  Identities=6%  Similarity=-0.127  Sum_probs=58.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      +.++|.++..+|+|++|+..|.+|+.+.|++         +..+.++|.|+...|+.+.|.+.|+.++....
T Consensus        72 ~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         72 WFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---------PQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999876         55679999999999999999999999998873

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.18  E-value=5.3e-10  Score=66.01  Aligned_cols=77  Identities=16%  Similarity=0.032  Sum_probs=63.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..++++++..|..         ...+..+|.++..+|++++|+++++++++..|.++..+.+
T Consensus        34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  104 (234)
T TIGR02521        34 RVQLALGYLEQGDLEVAKENLDKALEHDPDD---------YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN  104 (234)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            4578889999999999999999998876654         3455788899999999999999999999888888887777


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       105 ~~~~~~  110 (234)
T TIGR02521       105 YGTFLC  110 (234)
T ss_pred             HHHHHH
Confidence            776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.18  E-value=3.3e-10  Score=71.01  Aligned_cols=68  Identities=13%  Similarity=-0.005  Sum_probs=62.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   78 (90)
                      .+.++|.++...|++++|+..|++++++.|+.         ...+.++|.++...|++++|++.++++++++|+++.
T Consensus       100 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        100 AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            36789999999999999999999999998876         455699999999999999999999999999998873

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.18  E-value=2.7e-10  Score=77.22  Aligned_cols=77  Identities=6%  Similarity=-0.098  Sum_probs=63.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ...+.++|.++.++|++++|+..|++++...|.++.++..
T Consensus       402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~  472 (615)
T TIGR00990       402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF---------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY  472 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCccC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            4567888888888888888888888877655         3445888999999999999999999999999988888888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       473 lg~~~~  478 (615)
T TIGR00990       473 YGELLL  478 (615)
T ss_pred             HHHHHH
Confidence            887765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.18  E-value=7.4e-10  Score=60.03  Aligned_cols=80  Identities=16%  Similarity=0.051  Sum_probs=62.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC---hHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---AST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~   79 (90)
                      +.++|..+...|++++|+..|+++++..|.....      +..++.+|.++.+.|++++|+.+|++++...|.+   +.+
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   78 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA------PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA   78 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence            4578888999999999999999998876643211      3345789999999999999999999999888764   456


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      +..+|.++.
T Consensus        79 ~~~~~~~~~   87 (119)
T TIGR02795        79 LLKLGMSLQ   87 (119)
T ss_pred             HHHHHHHHH
Confidence            777777654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.13  E-value=2.4e-10  Score=74.53  Aligned_cols=65  Identities=18%  Similarity=0.016  Sum_probs=57.5

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ++.|+|.+|...|+|++|+.+|++++++.|+.     .+. ...++|+|.+|..+|++++|+.++++|+++
T Consensus        77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-----aeA-~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         77 DAVNLGLSLFSKGRVKDALAQFETALELNPNP-----DEA-QAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----hHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999999998876     211 124699999999999999999999999997

>KOG1126|consensus

Probab=99.13  E-value=1.1e-10  Score=78.30  Aligned_cols=78  Identities=17%  Similarity=0.123  Sum_probs=67.3

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ++..+|++|.++++++.|+-+|++|+++-|.+         ..++..+|..+.+.|+.++|+++|++|+.++|.++...+
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n---------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN---------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY  561 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccc---------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence            56789999999999999999999999998887         445577899999999999999999999999998888888


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      ..|.++-
T Consensus       562 ~~~~il~  568 (638)
T KOG1126|consen  562 HRASILF  568 (638)
T ss_pred             HHHHHHH
Confidence            7777654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.13  E-value=4.5e-10  Score=68.55  Aligned_cols=76  Identities=18%  Similarity=0.086  Sum_probs=69.5

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ..|......|+|..|+..++++....|.+         +..++-+|.+|-+.|++++|...|.|++++.|.++.+..|+|
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg  175 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARLAPTD---------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG  175 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhccCCCC---------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence            47889999999999999999999998887         455599999999999999999999999999999999999999


Q ss_pred             HHHhc
Q psy8498          85 VKEGV   89 (90)
Q Consensus        85 ~~~~~   89 (90)
                      +.+.+
T Consensus       176 ms~~L  180 (257)
T COG5010         176 MSLLL  180 (257)
T ss_pred             HHHHH
Confidence            88753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.12  E-value=7.1e-10  Score=61.74  Aligned_cols=68  Identities=12%  Similarity=-0.034  Sum_probs=60.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ...+.++|.++...|++++|+..++++++++|++...
T Consensus        54 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        54 WLGLAACCQMLKEYEEAIDAYALAAALDPDD---------PRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            5678999999999999999999999987665         4455899999999999999999999999999977663

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK12370 invasion protein regulator; Provisional

Probab=99.11  E-value=9.2e-10  Score=74.05  Aligned_cols=73  Identities=19%  Similarity=0.097  Sum_probs=60.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|.++...|++++|+.+|++++++.|..         +..++.+|.++...|++++|+..++++++++|.++..+..
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLSPIS---------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            4567888899999999999999999998776         4456889999999999999999999999999987665444


Q ss_pred             HH
Q psy8498          83 IV   84 (90)
Q Consensus        83 l~   84 (90)
                      .+
T Consensus       412 ~~  413 (553)
T PRK12370        412 KL  413 (553)
T ss_pred             HH
Confidence            33

>KOG1125|consensus

Probab=99.11  E-value=9.2e-11  Score=77.76  Aligned_cols=76  Identities=21%  Similarity=0.187  Sum_probs=70.3

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..||++|...|+|++|+.||+.|+...|.+     ...|    ++||-.+....+..+|+..|.+|+++.|....+.+++
T Consensus       434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd-----~~lW----NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl  504 (579)
T KOG1125|consen  434 SGLGVLYNLSGEFDRAVDCFEAALQVKPND-----YLLW----NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL  504 (579)
T ss_pred             hhhHHHHhcchHHHHHHHHHHHHHhcCCch-----HHHH----HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence            468999999999999999999999999988     4555    9999999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy8498          84 VVKEG   88 (90)
Q Consensus        84 ~~~~~   88 (90)
                      |+++.
T Consensus       505 gIS~m  509 (579)
T KOG1125|consen  505 GISCM  509 (579)
T ss_pred             hhhhh
Confidence            98765

>KOG1173|consensus

Probab=99.09  E-value=7.5e-10  Score=73.56  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=66.5

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.|+|.++.+.+.+++|+.+|++++.+.|.+         +.++..+|.+|..+|.++.|+++|.+||.++|.+..+-.
T Consensus       457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~  527 (611)
T KOG1173|consen  457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD---------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE  527 (611)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence            47899999999999999999999999999887         778899999999999999999999999999998865544


Q ss_pred             HHH
Q psy8498          82 CIV   84 (90)
Q Consensus        82 ~l~   84 (90)
                      -++
T Consensus       528 lL~  530 (611)
T KOG1173|consen  528 LLK  530 (611)
T ss_pred             HHH
Confidence            333

>KOG1155|consensus

Probab=99.08  E-value=3.8e-10  Score=73.75  Aligned_cols=76  Identities=16%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      +|.-|...+++++|+.+|++|+++.|..     ...|    .-+|+=|.++.....|++.|++|++++|.+-.+++.+|+
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~-----~~aW----TLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQ  406 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKY-----LSAW----TLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQ  406 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcch-----hHHH----HHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhH
Confidence            5778999999999999999999998877     3444    889999999999999999999999999999999999999


Q ss_pred             HHhcC
Q psy8498          86 KEGVL   90 (90)
Q Consensus        86 ~~~~~   90 (90)
                      .|..+
T Consensus       407 aYeim  411 (559)
T KOG1155|consen  407 AYEIM  411 (559)
T ss_pred             HHHHh
Confidence            98754

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.05  E-value=1.1e-09  Score=56.73  Aligned_cols=70  Identities=20%  Similarity=0.168  Sum_probs=57.2

Q ss_pred             hhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          12 KSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        12 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      ++|+|+.|+.+|+++++..|... +      ...+..+|.++++.|++++|+..+++ .+.+|.++...+.+|.|+..
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~-~------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP-N------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK   70 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH-H------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh-h------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence            47899999999999999988521 1      23447799999999999999999999 88888887888788887754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.04  E-value=3e-09  Score=64.28  Aligned_cols=80  Identities=18%  Similarity=0.045  Sum_probs=67.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH---H
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS---T   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~   79 (90)
                      +.+.|..+...|++++|+..|+++++..|....      ....+..+|.++...|++++|+..|+++++..|+++.   +
T Consensus        36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            467899999999999999999999998876521      1335688999999999999999999999999997776   5


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      ++.+|.++.
T Consensus       110 ~~~~g~~~~  118 (235)
T TIGR03302       110 YYLRGLSNY  118 (235)
T ss_pred             HHHHHHHHH
Confidence            777777763

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0543|consensus

Probab=99.03  E-value=1.9e-09  Score=69.31  Aligned_cols=76  Identities=17%  Similarity=0.057  Sum_probs=69.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.|++.++.++++|.+|+.+..+++++.|.+         .+.+++-|.++..+|+++.|+..|++++++.|.|-.+..
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~  329 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNN---------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA  329 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            46799999999999999999999999998888         777899999999999999999999999999999877766


Q ss_pred             HHHHH
Q psy8498          82 CIVVK   86 (90)
Q Consensus        82 ~l~~~   86 (90)
                      .+..+
T Consensus       330 el~~l  334 (397)
T KOG0543|consen  330 ELIKL  334 (397)
T ss_pred             HHHHH
Confidence            66544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.02  E-value=1.7e-09  Score=53.93  Aligned_cols=46  Identities=24%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             HHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      .++..+|.++...|++++|+.+|+++++++|+++.+++++|.++..
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~   49 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK   49 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4569999999999999999999999999999999999999999864

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.02  E-value=3.1e-09  Score=72.85  Aligned_cols=76  Identities=13%  Similarity=0.019  Sum_probs=54.3

Q ss_pred             hhHHHHHHhhCCHHH----HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498           4 DNVELSSDKSFSYTV----AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      .++|.++...|++++    |+..|++++++.|+.         ..++.++|.++..+|++++|+.+++++++++|+++.+
T Consensus       250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a  320 (656)
T PRK15174        250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV  320 (656)
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            456777777777764    677777777776654         3445777777777788888888888877777777777


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      +..+|.++.
T Consensus       321 ~~~La~~l~  329 (656)
T PRK15174        321 RAMYARALR  329 (656)
T ss_pred             HHHHHHHHH
Confidence            777776654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.01  E-value=2.7e-09  Score=75.77  Aligned_cols=77  Identities=10%  Similarity=0.013  Sum_probs=68.4

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.++...|++++|+.+|++++++.|..         +.+++++|.++..+|++++|+.+|+++++++|+++.+..
T Consensus       645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~---------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~  715 (987)
T PRK09782        645 YQAALGYALWDSGDIAQSREMLERAHKGLPDD---------PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP  715 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence            35789999999999999999999999998877         556699999999999999999999999999998887776


Q ss_pred             HHHHHH
Q psy8498          82 CIVVKE   87 (90)
Q Consensus        82 ~l~~~~   87 (90)
                      .+|.+.
T Consensus       716 ~~g~~~  721 (987)
T PRK09782        716 LTPEQN  721 (987)
T ss_pred             hhhHHH
Confidence            666543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.00  E-value=8.1e-09  Score=55.89  Aligned_cols=73  Identities=16%  Similarity=0.063  Sum_probs=61.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ...+|.++...|++++|+.+|+++++..|.....      +..+..+|.++.++|++++|+.++++++...|+++.+..
T Consensus        42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA------PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc------cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            3468999999999999999999999988765222      334588999999999999999999999999998776543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK12370 invasion protein regulator; Provisional

Probab=99.00  E-value=3.5e-09  Score=71.32  Aligned_cols=67  Identities=18%  Similarity=0.070  Sum_probs=60.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      +++++|+..+++++++.|++         +.++..+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  384 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNN---------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM  384 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45899999999999998877         55568999999999999999999999999999999999999988753

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.98  E-value=4.8e-09  Score=72.24  Aligned_cols=76  Identities=4%  Similarity=-0.160  Sum_probs=42.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.+....|++++|+.+++.++++.|+.         .....+++.++.+++++++|+..+++++..+|+++.+++.
T Consensus        89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            4466667777777777777777777776665         2223444555555555555555555555555544444444


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|.++
T Consensus       160 ~a~~l  164 (694)
T PRK15179        160 EAKSW  164 (694)
T ss_pred             HHHHH
Confidence            44443

>KOG4555|consensus

Probab=98.95  E-value=1.5e-08  Score=56.95  Aligned_cols=77  Identities=19%  Similarity=0.081  Sum_probs=65.8

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh----HH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA----ST   79 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~   79 (90)
                      ..-|+...+.|+.+.|++.|.+++.+.|+.         ++.|+|-+..++-+|+.++|++...+++++.....    .+
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~r---------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa  117 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPER---------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA  117 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccc---------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence            345788999999999999999999999988         88899999999999999999999999999975333    33


Q ss_pred             HHHHHHHHhc
Q psy8498          80 FCCIVVKEGV   89 (90)
Q Consensus        80 ~~~l~~~~~~   89 (90)
                      ++..|.+|.+
T Consensus       118 ~vQRg~lyRl  127 (175)
T KOG4555|consen  118 FVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHHHH
Confidence            5667777664

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.95  E-value=7e-09  Score=71.44  Aligned_cols=78  Identities=5%  Similarity=-0.142  Sum_probs=69.5

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      +..+.+.++.+.+++++|+..+++++...|++         +..++.+|.++.++|++++|+..|++++.-+|+++.++.
T Consensus       122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~  192 (694)
T PRK15179        122 AFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV  192 (694)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence            35688999999999999999999999998887         666799999999999999999999999998888899999


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      .+|+++.
T Consensus       193 ~~a~~l~  199 (694)
T PRK15179        193 GWAQSLT  199 (694)
T ss_pred             HHHHHHH
Confidence            8888764

>KOG1126|consensus

Probab=98.95  E-value=4.9e-10  Score=75.27  Aligned_cols=86  Identities=17%  Similarity=0.120  Sum_probs=68.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-------------------------cchhhHHHHHHhHHHHHHHhc
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE-------------------------IIADKWEPLLNNLGHVNRKLK   57 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------~~~~~~~~~~~~lg~~~~~~g   57 (90)
                      |-.+|.+|.-+++|+.|+++|++|+.+.|+....                         ......-.+++-+|.+|.+++
T Consensus       424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe  503 (638)
T KOG1126|consen  424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE  503 (638)
T ss_pred             HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence            4568999999999999999999999999865210                         011111233478899999999


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          58 KYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      +++.|.-+|++|++++|.+....+.+|.++-
T Consensus       504 k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~  534 (638)
T KOG1126|consen  504 KLEFAEFHFQKAVEINPSNSVILCHIGRIQH  534 (638)
T ss_pred             hhhHHHHHHHhhhcCCccchhHHhhhhHHHH
Confidence            9999999999999999999999988888764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.94  E-value=1.9e-08  Score=59.29  Aligned_cols=78  Identities=18%  Similarity=0.168  Sum_probs=50.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..|+++++..+.. ..      ...+.++|.++...|++++|..++++++..+|.++.++..
T Consensus       102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  174 (234)
T TIGR02521       102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-QP------ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE  174 (234)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhccccc-cc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence            3566777777777777777777777642211 00      2234667777777777777777777777777766666666


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|.++
T Consensus       175 la~~~  179 (234)
T TIGR02521       175 LAELY  179 (234)
T ss_pred             HHHHH
Confidence            66554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.94  E-value=1e-08  Score=59.26  Aligned_cols=77  Identities=12%  Similarity=-0.063  Sum_probs=64.1

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ..|.-+...|++++|+..|+-+.-..+.+     .+.    +..||.|+..+++|++|+..|..|..+++++|.+.+..|
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-----~~Y----~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYDFYN-----PDY----TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            45666788999999999999888876655     333    488999999999999999999999999999999999999


Q ss_pred             HHHhcC
Q psy8498          85 VKEGVL   90 (90)
Q Consensus        85 ~~~~~~   90 (90)
                      .|+..|
T Consensus       113 qC~l~l  118 (165)
T PRK15331        113 QCQLLM  118 (165)
T ss_pred             HHHHHh
Confidence            888653

>KOG1840|consensus

Probab=98.93  E-value=1.4e-08  Score=67.78  Aligned_cols=70  Identities=30%  Similarity=0.281  Sum_probs=61.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      +.++|.+|..+++|.+|+..|++|+.+.....+.. ++..+.++++||.+|.+.|++++|..++++|+.|.
T Consensus       244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            45699999999999999999999999998774432 35557789999999999999999999999999874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.92  E-value=2.1e-08  Score=58.35  Aligned_cols=66  Identities=24%  Similarity=0.267  Sum_probs=55.4

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC--------------HHHHHHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK--------------YEEALEFHK   67 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~   67 (90)
                      .+.++|.++...|++++|+.+++++++..|..         ...+..+|.++..+|+              +++|+++++
T Consensus        74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~  144 (172)
T PRK02603         74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQ---------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWK  144 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999987765         3445788999988887              677888888


Q ss_pred             HHHhhCCCC
Q psy8498          68 QALVVAPMK   76 (90)
Q Consensus        68 ~al~~~~~~   76 (90)
                      +++..+|++
T Consensus       145 ~a~~~~p~~  153 (172)
T PRK02603        145 QAIRLAPNN  153 (172)
T ss_pred             HHHhhCchh
Confidence            888888865

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.92  E-value=7.9e-09  Score=53.53  Aligned_cols=57  Identities=25%  Similarity=0.149  Sum_probs=46.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA   69 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   69 (90)
                      +..+|.++...|+|++|+..+++ .+..+..         ..+..-+|.++.++|++++|++.++++
T Consensus        28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---------~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---------PDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            34689999999999999999999 6665544         344467799999999999999999875

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.92  E-value=2.4e-08  Score=61.94  Aligned_cols=87  Identities=17%  Similarity=0.053  Sum_probs=65.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-----------c-chh-------------hHHHHHHhHHHHHHHhc
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE-----------I-IAD-------------KWEPLLNNLGHVNRKLK   57 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~-~~~-------------~~~~~~~~lg~~~~~~g   57 (90)
                      +...|.++.+.|++++|+++|+++++..|++..-           . ..+             .-+..+..+|.++..+|
T Consensus       149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg  228 (280)
T PF13429_consen  149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG  228 (280)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence            3467899999999999999999999999985110           0 000             00112367899999999


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          58 KYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      ++++|+.+|+++++.+|+++..+..+|.++..
T Consensus       229 ~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~  260 (280)
T PF13429_consen  229 RYEEALEYLEKALKLNPDDPLWLLAYADALEQ  260 (280)
T ss_dssp             -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999988753

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.91  E-value=6.3e-09  Score=47.81  Aligned_cols=42  Identities=19%  Similarity=0.266  Sum_probs=38.5

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK   86 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~   86 (90)
                      .+..+|.+|..+|++++|++.|+++++.+|+++.++..+|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            348899999999999999999999999999999999888753

>KOG1840|consensus

Probab=98.91  E-value=2.2e-08  Score=66.84  Aligned_cols=85  Identities=27%  Similarity=0.234  Sum_probs=69.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC--------C
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--------P   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~   74 (90)
                      +.+++..|..+|+|++|+..++.|+++..+..+. .....+..++++|.+|..++++++|+..|++|+.+.        |
T Consensus       202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            4579999999999999999999999997766442 234446667889999999999999999999999873        3


Q ss_pred             CChHHHHHHHHHHh
Q psy8498          75 MKASTFCCIVVKEG   88 (90)
Q Consensus        75 ~~~~~~~~l~~~~~   88 (90)
                      .-+.++.++|..|.
T Consensus       281 ~va~~l~nLa~ly~  294 (508)
T KOG1840|consen  281 AVAATLNNLAVLYY  294 (508)
T ss_pred             HHHHHHHHHHHHHh
Confidence            44566888888774

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.91  E-value=4.9e-09  Score=45.44  Aligned_cols=33  Identities=39%  Similarity=0.558  Sum_probs=29.2

Q ss_pred             HHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498          44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus        44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      .++.++|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            356999999999999999999999999999963

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.91  E-value=1.5e-08  Score=69.55  Aligned_cols=78  Identities=14%  Similarity=-0.027  Sum_probs=65.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.+....|++++|+..|+++++..|+.         +..+..+|.++...|++++|+..|+++++++|.++.++.
T Consensus        78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~---------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~  148 (656)
T PRK15174         78 LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ---------PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFA  148 (656)
T ss_pred             HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            35677888888999999999999999988876         344588899999999999999999999999998888888


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      .+|.++.
T Consensus       149 ~la~~l~  155 (656)
T PRK15174        149 LHLRTLV  155 (656)
T ss_pred             HHHHHHH
Confidence            8777654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.91  E-value=4.7e-08  Score=54.11  Aligned_cols=67  Identities=24%  Similarity=0.176  Sum_probs=56.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +.+.|.++...|+.++|+.+|+++++.....      ......+..+|.+++.+|++++|+..+++++...|+
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSG------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            4678999999999999999999999853221      222446689999999999999999999999988776

>KOG0543|consensus

Probab=98.90  E-value=2e-08  Score=64.71  Aligned_cols=86  Identities=19%  Similarity=0.046  Sum_probs=72.0

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEI------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   78 (90)
                      .-|..|.+.|+|..|..-|+++++..+......      .......++.|++.|+.++++|.+|+....++|.++|.|..
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K  292 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK  292 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence            348899999999999999999999888552211      01223446899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q psy8498          79 TFCCIVVKEGVL   90 (90)
Q Consensus        79 ~~~~l~~~~~~~   90 (90)
                      +++..|.++..+
T Consensus       293 ALyRrG~A~l~~  304 (397)
T KOG0543|consen  293 ALYRRGQALLAL  304 (397)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988753

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.90  E-value=1.8e-08  Score=72.60  Aligned_cols=74  Identities=19%  Similarity=0.115  Sum_probs=66.1

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ..|.++...|++++|+.+|++++++.|..         ...+..+|.++..+|++++|+++|+++++++|.+..++..++
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~  426 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTD---------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA  426 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45778899999999999999999997765         445688999999999999999999999999999999888887


Q ss_pred             HHH
Q psy8498          85 VKE   87 (90)
Q Consensus        85 ~~~   87 (90)
                      .++
T Consensus       427 ~l~  429 (1157)
T PRK11447        427 NLY  429 (1157)
T ss_pred             HHH
Confidence            765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.89  E-value=1.3e-08  Score=60.69  Aligned_cols=66  Identities=17%  Similarity=0.202  Sum_probs=58.1

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498          13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      .++.++++..++++++..|++     .+.|    ..+|.++...|++++|+..|+++++++|+++..+..+|.++
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~-----~~~w----~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL  117 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQN-----SEQW----ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVL  117 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCC-----HHHH----HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            466688888888888888777     4555    99999999999999999999999999999999999999864

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.86  E-value=2.2e-08  Score=68.72  Aligned_cols=86  Identities=15%  Similarity=0.124  Sum_probs=56.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC-------------Cc-----------chhhHHHHHHhHHHHHHHhcC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG-------------EI-----------IADKWEPLLNNLGHVNRKLKK   58 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~-----------~~~~~~~~~~~lg~~~~~~g~   58 (90)
                      +..+|.++...|++++|+.+|+++++..|....             ..           .....+..+..+|.++...|+
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  852 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGE  852 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence            345666677777777777777776666543200             00           000002234677888888888


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          59 YEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      +++|+.+|+++++.+|.++.++..++.++.
T Consensus       853 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  882 (899)
T TIGR02917       853 ADRALPLLRKAVNIAPEAAAIRYHLALALL  882 (899)
T ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            888888888888888888888888887765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.86  E-value=1.4e-08  Score=43.80  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=29.3

Q ss_pred             HHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498          44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus        44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      ..++.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            346899999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0547|consensus

Probab=98.85  E-value=1.1e-08  Score=67.46  Aligned_cols=78  Identities=14%  Similarity=0.098  Sum_probs=69.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.+.|.-+.+.|+|++|+.+|..|+++.|+.         +.-|.|.+-||...|+|++-++...+|++++|+...+++.
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R  188 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR  188 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            5677889999999999999999999998764         2346999999999999999999999999999999999988


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      .+.++-.
T Consensus       189 RA~A~E~  195 (606)
T KOG0547|consen  189 RASAHEQ  195 (606)
T ss_pred             HHHHHHh
Confidence            8877643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.84  E-value=7.6e-08  Score=59.71  Aligned_cols=77  Identities=14%  Similarity=0.049  Sum_probs=61.3

Q ss_pred             HHHHH-HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC---ChHHHH
Q psy8498           6 VELSS-DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM---KASTFC   81 (90)
Q Consensus         6 l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~   81 (90)
                      .+..+ ...|+|++|+..|++.++..|+....      +..++.+|.+|+..|++++|+..|++++...|+   .+.+++
T Consensus       148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a------~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        148 AAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ------PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            34444 55689999999999999999876322      445688999999999999999999999987775   467788


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      .+|.++.
T Consensus       222 klg~~~~  228 (263)
T PRK10803        222 KVGVIMQ  228 (263)
T ss_pred             HHHHHHH
Confidence            8888774

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.84  E-value=4.3e-08  Score=67.31  Aligned_cols=74  Identities=15%  Similarity=0.027  Sum_probs=49.2

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      ++.++...|++++|+..++++++..|..         ...++.+|.++...|++++|+..|+++++..|+++.++.++|.
T Consensus       742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  812 (899)
T TIGR02917       742 LHRALLASGNTAEAVKTLEAWLKTHPND---------AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW  812 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3444444444444444444444433322         3455788888888888888888888888888888888888877


Q ss_pred             HHh
Q psy8498          86 KEG   88 (90)
Q Consensus        86 ~~~   88 (90)
                      ++.
T Consensus       813 ~~~  815 (899)
T TIGR02917       813 LYL  815 (899)
T ss_pred             HHH
Confidence            764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.84  E-value=3.8e-08  Score=56.97  Aligned_cols=65  Identities=29%  Similarity=0.288  Sum_probs=48.4

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHH-------HhcCHHH-------HHHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNR-------KLKKYEE-------ALEFHK   67 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~-------~~g~~~~-------A~~~~~   67 (90)
                      ++.++|.++...|++++|+.+|++++++.|..         ...+.++|.++.       ++|++++       |+..|+
T Consensus        74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033         74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFL---------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999986655         222355566655       8888774       455555


Q ss_pred             HHHhhCCC
Q psy8498          68 QALVVAPM   75 (90)
Q Consensus        68 ~al~~~~~   75 (90)
                      +++..+|.
T Consensus       145 ~a~~~~p~  152 (168)
T CHL00033        145 QAIALAPG  152 (168)
T ss_pred             HHHHhCcc
Confidence            56666774

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.81  E-value=7.7e-08  Score=61.70  Aligned_cols=60  Identities=17%  Similarity=0.069  Sum_probs=28.8

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      +|.++...|++++|+.+|+++++..|..         ...+..+|.++.+.|++++|++.+++++..+|
T Consensus       186 la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        186 LAQQALARGDLDAARALLKKALAADPQC---------VRASILLGDLALAQGDYAAAIEALERVEEQDP  245 (389)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHCcCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence            4444455555555555555555544332         12224445555555555555555555554444

>KOG0548|consensus

Probab=98.80  E-value=3.1e-08  Score=65.61  Aligned_cols=75  Identities=20%  Similarity=0.139  Sum_probs=66.5

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      +-|.-++..|+|..|+.+|.+|++..|++         +..|.|.|.||.++|.+..|++..+.+++++|+...+|..-|
T Consensus       363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~D---------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg  433 (539)
T KOG0548|consen  363 EKGNEAFKKGDYPEAVKHYTEAIKRDPED---------ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG  433 (539)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCch---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence            34778899999999999999999998877         667799999999999999999999999999999988888888


Q ss_pred             HHHh
Q psy8498          85 VKEG   88 (90)
Q Consensus        85 ~~~~   88 (90)
                      .++.
T Consensus       434 ~al~  437 (539)
T KOG0548|consen  434 AALR  437 (539)
T ss_pred             HHHH
Confidence            7764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.80  E-value=1.1e-07  Score=59.02  Aligned_cols=72  Identities=8%  Similarity=-0.056  Sum_probs=62.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      +.-+|.+|...|++++|+..|+++++..|+....      +..+..+|.++..+|++++|+..|++.++..|+...+.
T Consensus       183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            4568999999999999999999999999987433      44568899999999999999999999999999766543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.79  E-value=6.2e-08  Score=62.12  Aligned_cols=81  Identities=9%  Similarity=-0.099  Sum_probs=55.5

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..++.++...|++++|+..|+++++..|....    ......+..+|.++.+.|++++|+.+|+++++.+|....++..+
T Consensus       145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  220 (389)
T PRK11788        145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR----VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL  220 (389)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence            34555555666666666666655554332210    11123456789999999999999999999999999888888888


Q ss_pred             HHHHh
Q psy8498          84 VVKEG   88 (90)
Q Consensus        84 ~~~~~   88 (90)
                      |.++.
T Consensus       221 a~~~~  225 (389)
T PRK11788        221 GDLAL  225 (389)
T ss_pred             HHHHH
Confidence            87765

>KOG1129|consensus

Probab=98.79  E-value=8.4e-09  Score=65.56  Aligned_cols=79  Identities=24%  Similarity=0.295  Sum_probs=70.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|+|.++.-.++++-++.+|++|+......+..  .+.|    +|+|.+....||+.-|.++|+-++..++++..++.+
T Consensus       361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a--aDvW----YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN  434 (478)
T KOG1129|consen  361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA--ADVW----YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN  434 (478)
T ss_pred             HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh--hhhh----hccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence            6799999999999999999999999998765333  4555    999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|+..
T Consensus       435 LavL~  439 (478)
T KOG1129|consen  435 LAVLA  439 (478)
T ss_pred             HHHHH
Confidence            99864

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.79  E-value=7.5e-08  Score=69.55  Aligned_cols=75  Identities=9%  Similarity=-0.047  Sum_probs=66.3

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..+|.++...|++++|+.+|++++++.|+.         +.++..+|.++..+|++++|+..++++++..|.++.+++..
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~---------~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~  535 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGS---------VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY  535 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            457888999999999999999999998876         44568999999999999999999999999999999888777


Q ss_pred             HHHH
Q psy8498          84 VVKE   87 (90)
Q Consensus        84 ~~~~   87 (90)
                      +..+
T Consensus       536 al~l  539 (1157)
T PRK11447        536 GLYL  539 (1157)
T ss_pred             HHHH
Confidence            6543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.79  E-value=3.5e-08  Score=50.10  Aligned_cols=63  Identities=33%  Similarity=0.280  Sum_probs=55.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      +..+|.++...+++++|+.+|+++++..|..         ...+..+|.++...|++++|..++++++...|
T Consensus        37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          37 YYNLAAAYYKLGKYEEALEDYEKALELDPDN---------AKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            4578999999999999999999999987665         23458899999999999999999999998876

>KOG1155|consensus

Probab=98.77  E-value=5.8e-08  Score=63.83  Aligned_cols=82  Identities=17%  Similarity=0.176  Sum_probs=57.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhH------------------------------HHHHHhHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKW------------------------------EPLLNNLGH   51 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------------------------~~~~~~lg~   51 (90)
                      ++.-+|.-|.++.+-..|++.|++|+++-|.+     ...|                              ..++..||.
T Consensus       366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-----yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~  440 (559)
T KOG1155|consen  366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-----YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGE  440 (559)
T ss_pred             HHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-----HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            34567888888888888888888888888876     2222                              222366777


Q ss_pred             HHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          52 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        52 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      ||.++++.++|+.+|++|+.....+..++..+|..|-
T Consensus       441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye  477 (559)
T KOG1155|consen  441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE  477 (559)
T ss_pred             HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            7777777777777777777776666677777776653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.76  E-value=1.6e-07  Score=57.64  Aligned_cols=77  Identities=6%  Similarity=-0.128  Sum_probs=63.7

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC---hHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---ASTFC   81 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~   81 (90)
                      ..|..+...|+|++|++.|++.++..|..      .........+|.++++.+++++|+..+++.++..|++   +.+++
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFG------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            45777888999999999999999988865      2223456889999999999999999999999999865   45577


Q ss_pred             HHHHHH
Q psy8498          82 CIVVKE   87 (90)
Q Consensus        82 ~l~~~~   87 (90)
                      .+|.++
T Consensus       111 ~~g~~~  116 (243)
T PRK10866        111 MRGLTN  116 (243)
T ss_pred             HHHHhh
Confidence            777663

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.76  E-value=1.3e-07  Score=58.03  Aligned_cols=78  Identities=15%  Similarity=0.119  Sum_probs=70.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|.+|.+.|+++.|..-|.+++++.+..         +++.+|+|..+.-.|+++.|..++..+....+.+..+..+
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N  207 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNE---------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN  207 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCC---------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence            5678999999999999999999999999987         6677999999999999999999999998777778888888


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      ++.+..+
T Consensus       208 LAl~~~~  214 (257)
T COG5010         208 LALVVGL  214 (257)
T ss_pred             HHHHHhh
Confidence            8887653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.76  E-value=2.1e-07  Score=55.65  Aligned_cols=80  Identities=15%  Similarity=0.044  Sum_probs=63.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh---HH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---ST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~   79 (90)
                      +-..|..+...|+|++|+..|++.++..|....      .+.....+|.++++.|++++|+..+++-++..|.++   .+
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            456789999999999999999999999887633      255668999999999999999999999999998654   46


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      ++.+|.++.
T Consensus        82 ~Y~~g~~~~   90 (203)
T PF13525_consen   82 LYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777877653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.76  E-value=1.5e-07  Score=53.31  Aligned_cols=79  Identities=14%  Similarity=0.029  Sum_probs=65.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH---H
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS---T   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~   79 (90)
                      +-+-|.-..+.|+|++|++.|+......|.....      ..+...++.+|++.|++++|+..+++-++++|.++.   +
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            3456778889999999999999999988877444      445588999999999999999999999999997654   4


Q ss_pred             HHHHHHHH
Q psy8498          80 FCCIVVKE   87 (90)
Q Consensus        80 ~~~l~~~~   87 (90)
                      ++.+|.++
T Consensus        87 ~Y~~gL~~   94 (142)
T PF13512_consen   87 YYMRGLSY   94 (142)
T ss_pred             HHHHHHHH
Confidence            66677654

>KOG2002|consensus

Probab=98.74  E-value=9.7e-08  Score=66.91  Aligned_cols=79  Identities=19%  Similarity=0.114  Sum_probs=69.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|+|.+|..+|+|..|++.|+..++-.-.. +.      ..+++.||.++++.|++.+|.+....|+.+.|.++...++
T Consensus       683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~-~~------~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN  755 (1018)
T KOG2002|consen  683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKK-NR------SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN  755 (1018)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHHHhccc-CC------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence            6799999999999999999999999876633 11      4456889999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.+.-
T Consensus       756 ~a~v~k  761 (1018)
T KOG2002|consen  756 LALVLK  761 (1018)
T ss_pred             HHHHHH
Confidence            998864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.73  E-value=1.7e-07  Score=57.81  Aligned_cols=80  Identities=21%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC---ChHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM---KASTF   80 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~   80 (90)
                      .+.+.-+...|+|..|+..|++=++.+|.....      +..+++||.+++.+|+++.|...|..+.+-.|+   -++++
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal  218 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL  218 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence            467888889999999999999999999887433      556688999999999999999999999988774   46779


Q ss_pred             HHHHHHHhc
Q psy8498          81 CCIVVKEGV   89 (90)
Q Consensus        81 ~~l~~~~~~   89 (90)
                      +.+|.+..-
T Consensus       219 lKlg~~~~~  227 (262)
T COG1729         219 LKLGVSLGR  227 (262)
T ss_pred             HHHHHHHHH
Confidence            999988653

>KOG0548|consensus

Probab=98.73  E-value=7.9e-08  Score=63.76  Aligned_cols=88  Identities=18%  Similarity=0.095  Sum_probs=68.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-----------------cchhhHHHHHHhHHHHHHHhcCHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE-----------------IIADKWEPLLNNLGHVNRKLKKYEEALEF   65 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   65 (90)
                      +..+|..|.++++++.|+.+|++++.........                 -.....+.--..-|..+++.|+|..|+..
T Consensus       301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~  380 (539)
T KOG0548|consen  301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH  380 (539)
T ss_pred             HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence            4567889999999999999999999876652110                 00000011124459999999999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHhcC
Q psy8498          66 HKQALVVAPMKASTFCCIVVKEGVL   90 (90)
Q Consensus        66 ~~~al~~~~~~~~~~~~l~~~~~~~   90 (90)
                      |.+|+..+|+++..|+|.|.||..|
T Consensus       381 YteAIkr~P~Da~lYsNRAac~~kL  405 (539)
T KOG0548|consen  381 YTEAIKRDPEDARLYSNRAACYLKL  405 (539)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.70  E-value=1.9e-07  Score=65.15  Aligned_cols=79  Identities=20%  Similarity=0.068  Sum_probs=43.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhH------------------------------HHHHHhHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKW------------------------------EPLLNNLGHV   52 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------------------------~~~~~~lg~~   52 (90)
                      +.++|.++...|++++|+.+|+++++..|..     ...+                              .. +..+|.+
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~  125 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQN-----DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV  125 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence            3455666666666666666666666665543     0111                              12 3555666


Q ss_pred             HHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498          53 NRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      +...|++++|+..+++++++.|+++.++..++.++
T Consensus       126 l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l  160 (765)
T PRK10049        126 YKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL  160 (765)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            66666666666666666666665555555555443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.70  E-value=1.7e-07  Score=59.49  Aligned_cols=75  Identities=12%  Similarity=0.087  Sum_probs=58.4

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH----H
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS----T   79 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~   79 (90)
                      ..+|.++...|++++|+..++++++..|+.         ...+..+|.++...|++++|+.++++++...|..+.    .
T Consensus       118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         118 GMLAFGLEEAGQYDRAEEAARRALELNPDD---------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence            356788999999999999999999987765         335588899999999999999999999988764332    2


Q ss_pred             HHHHHHHH
Q psy8498          80 FCCIVVKE   87 (90)
Q Consensus        80 ~~~l~~~~   87 (90)
                      +..+|.++
T Consensus       189 ~~~la~~~  196 (355)
T cd05804         189 WWHLALFY  196 (355)
T ss_pred             HHHHHHHH
Confidence            33455554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.69  E-value=2.3e-07  Score=64.74  Aligned_cols=75  Identities=15%  Similarity=-0.086  Sum_probs=65.9

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..++.++...|++++|+..++++++..|..         ...+..+|.++...|++++|++.+++++.++|++...+...
T Consensus       363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~  433 (765)
T PRK10049        363 SLLSQVAKYSNDLPQAEMRARELAYNAPGN---------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ  433 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence            356889999999999999999999998877         44559999999999999999999999999999998888777


Q ss_pred             HHHH
Q psy8498          84 VVKE   87 (90)
Q Consensus        84 ~~~~   87 (90)
                      |.+.
T Consensus       434 a~~a  437 (765)
T PRK10049        434 AWTA  437 (765)
T ss_pred             HHHH
Confidence            7654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.67  E-value=4.2e-07  Score=54.94  Aligned_cols=71  Identities=14%  Similarity=-0.014  Sum_probs=60.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh--------cCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL--------KKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~~   74 (90)
                      +..+|.++...|++++|+..|+++++..|+....      ...++.+|.++...        |++++|++.|++++...|
T Consensus        73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302        73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence            4578999999999999999999999999876221      33458889999876        899999999999999999


Q ss_pred             CChHH
Q psy8498          75 MKAST   79 (90)
Q Consensus        75 ~~~~~   79 (90)
                      .+..+
T Consensus       147 ~~~~~  151 (235)
T TIGR03302       147 NSEYA  151 (235)
T ss_pred             CChhH
Confidence            87544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4234|consensus

Probab=98.61  E-value=2.9e-07  Score=55.19  Aligned_cols=79  Identities=20%  Similarity=0.137  Sum_probs=65.6

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      =|.-++..|+|++|...|..|+++-|....    .....++.|-|.++.+++.++.|+....+|+++.|.+-.++...|.
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe  176 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTST----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE  176 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccH----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence            366788999999999999999999887632    2334467889999999999999999999999999988888877777


Q ss_pred             HHh
Q psy8498          86 KEG   88 (90)
Q Consensus        86 ~~~   88 (90)
                      +|-
T Consensus       177 aye  179 (271)
T KOG4234|consen  177 AYE  179 (271)
T ss_pred             HHH
Confidence            764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.59  E-value=7.4e-07  Score=55.30  Aligned_cols=77  Identities=13%  Similarity=0.005  Sum_probs=53.9

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ....++...++++++...+.++....+ ...+      +..+..+|.++.+.|++++|+++|+++++++|+++.+...++
T Consensus       115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~  187 (280)
T PF13429_consen  115 SALQLYYRLGDYDEAEELLEKLEELPA-APDS------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA  187 (280)
T ss_dssp             ---H-HHHTT-HHHHHHHHHHHHH-T----T-------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccC-CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            344567778888888888888764321 1111      345588999999999999999999999999999999888887


Q ss_pred             HHHh
Q psy8498          85 VKEG   88 (90)
Q Consensus        85 ~~~~   88 (90)
                      .++.
T Consensus       188 ~~li  191 (280)
T PF13429_consen  188 WLLI  191 (280)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7653

>KOG0550|consensus

Probab=98.59  E-value=9.2e-08  Score=62.15  Aligned_cols=78  Identities=21%  Similarity=0.127  Sum_probs=68.2

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK   86 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~   86 (90)
                      |.-..+.|+|..|.++|.++|.+.|.+     ....+.+|.+.|.+..++|+.++|+....+++.++|....++...|.|
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n-----~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c  330 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSN-----KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC  330 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccc-----cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence            556778999999999999999999987     344477889999999999999999999999999999888888888888


Q ss_pred             Hhc
Q psy8498          87 EGV   89 (90)
Q Consensus        87 ~~~   89 (90)
                      +..
T Consensus       331 ~l~  333 (486)
T KOG0550|consen  331 HLA  333 (486)
T ss_pred             HHH
Confidence            754

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.58  E-value=8.1e-07  Score=55.50  Aligned_cols=68  Identities=19%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             hhhHHHHHHhh-CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           3 LDNVELSSDKS-FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      +.++|.+|... |++++|+++|++|++++...+..   .....++.++|.++.++|+|++|++.|++.....
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~---~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP---HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            56889999999 99999999999999999988643   2234567899999999999999999999988654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.58  E-value=4.4e-07  Score=61.02  Aligned_cols=66  Identities=12%  Similarity=-0.059  Sum_probs=57.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      ..+|..+...|++++|...+++|+++.| .         ...+..+|.++...|++++|++.|++|+.++|..+.-
T Consensus       424 ~ala~~~~~~g~~~~A~~~l~rAl~L~p-s---------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        424 EILAVQALVKGKTDEAYQAINKAIDLEM-S---------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            3467888889999999999999999975 2         3456899999999999999999999999999987754

>PLN02789 farnesyltranstransferase

Probab=98.57  E-value=8.6e-07  Score=56.45  Aligned_cols=76  Identities=16%  Similarity=0.016  Sum_probs=56.9

Q ss_pred             hhhHHHHHHhhCCH--HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498           3 LDNVELSSDKSFSY--TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus         3 ~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      +++.+.++...|+.  ++++.++.++++..|++     ...    ++..+.++...|+++++++++.++++++|.+..++
T Consensus       109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-----y~A----W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW  179 (320)
T PLN02789        109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-----YHA----WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW  179 (320)
T ss_pred             hHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-----HHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence            34445555555553  55666777777776666     333    48889999999999999999999999999999998


Q ss_pred             HHHHHHH
Q psy8498          81 CCIVVKE   87 (90)
Q Consensus        81 ~~l~~~~   87 (90)
                      ...+++.
T Consensus       180 ~~R~~vl  186 (320)
T PLN02789        180 NQRYFVI  186 (320)
T ss_pred             HHHHHHH
Confidence            8888764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=98.56  E-value=2.1e-07  Score=40.93  Aligned_cols=32  Identities=19%  Similarity=0.202  Sum_probs=27.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ++.+||.+|...|+|++|+++|++++.+.++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~   32 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP   32 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            47899999999999999999999999876654

>KOG2003|consensus

Probab=98.55  E-value=1.1e-06  Score=58.34  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=55.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|+|+.+-.+|+.++|+.+|-+.-.+...+         +.++..++.+|..+.+..+|++++-|+..+-|.+|..+..
T Consensus       527 lfniglt~e~~~~ldeald~f~klh~il~nn---------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk  597 (840)
T KOG2003|consen  527 LFNIGLTAEALGNLDEALDCFLKLHAILLNN---------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK  597 (840)
T ss_pred             HHHhcccHHHhcCHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence            5567777777777777777777766665554         4555777777777777778888888877777777777777


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|.+|
T Consensus       598 l~dly  602 (840)
T KOG2003|consen  598 LADLY  602 (840)
T ss_pred             HHHHh
Confidence            77665

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.54  E-value=4e-07  Score=59.84  Aligned_cols=49  Identities=16%  Similarity=0.058  Sum_probs=43.8

Q ss_pred             HHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHhcC
Q psy8498          42 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST---FCCIVVKEGVL   90 (90)
Q Consensus        42 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~l~~~~~~~   90 (90)
                      .+..++|+|.+|.++|+|++|+..|+++++++|+++.+   ++++|.+|..+
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L  125 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR  125 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc
Confidence            35567999999999999999999999999999998854   99999998754

>KOG1125|consensus

Probab=98.54  E-value=7.9e-07  Score=59.60  Aligned_cols=76  Identities=17%  Similarity=0.199  Sum_probs=70.7

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .-.|..+.+.|+..+|.-+|+.|++..|..     .+.|    ..||.++.+.++-..|+..+++|++++|.|-.++..+
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h-----aeAW----~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaL  359 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH-----AEAW----QKLGITQAENENEQNAISALRRCLELDPTNLEALMAL  359 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHH-----HHHH----HHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHH
Confidence            356889999999999999999999999998     6666    9999999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy8498          84 VVKEG   88 (90)
Q Consensus        84 ~~~~~   88 (90)
                      |+.|.
T Consensus       360 AVSyt  364 (579)
T KOG1125|consen  360 AVSYT  364 (579)
T ss_pred             HHHHh
Confidence            99874

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.53  E-value=2.8e-07  Score=39.68  Aligned_cols=31  Identities=42%  Similarity=0.674  Sum_probs=28.9

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +++.+|.++..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            5689999999999999999999999999884

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.53  E-value=1.1e-06  Score=58.04  Aligned_cols=77  Identities=17%  Similarity=-0.011  Sum_probs=66.8

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      -.+.++.+.++..+|++.+++++...|..         .....++|.++.+.|++.+|+...++.+.-+|+++..|..+|
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~---------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LA  415 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALALDPNS---------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLA  415 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCc---------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHH
Confidence            45788889999999999999999988865         223488999999999999999999999999999999999999


Q ss_pred             HHHhcC
Q psy8498          85 VKEGVL   90 (90)
Q Consensus        85 ~~~~~~   90 (90)
                      .+|..+
T Consensus       416 qay~~~  421 (484)
T COG4783         416 QAYAEL  421 (484)
T ss_pred             HHHHHh
Confidence            988753

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.53  E-value=2.8e-07  Score=46.85  Aligned_cols=47  Identities=30%  Similarity=0.329  Sum_probs=37.2

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC----C---CChHHHHHHHHHHhc
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA----P---MKASTFCCIVVKEGV   89 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~---~~~~~~~~l~~~~~~   89 (90)
                      +.+++++|.+|+.+|++++|+++|++++++.    +   ..+.++.++|.++..
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~   58 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR   58 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999762    1   224567888888753

...

>KOG0547|consensus

Probab=98.52  E-value=4.1e-07  Score=60.35  Aligned_cols=76  Identities=14%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|.+|.+..+.++....|.+|.++.|.+         +.+|+..|.++.-++++++|+..|++++.++|++.-++..
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n---------~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ  433 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPEN---------PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ  433 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCC---------CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence            4456778888888888888888888887776         4566888999999999999999999999999998888877


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      ++.+.
T Consensus       434 l~~a~  438 (606)
T KOG0547|consen  434 LCCAL  438 (606)
T ss_pred             HHHHH
Confidence            76653

>KOG2002|consensus

Probab=98.51  E-value=5.9e-07  Score=63.16  Aligned_cols=79  Identities=18%  Similarity=0.053  Sum_probs=68.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|..|..+|+|++|..+|.++++..+++-        .-.+.-+|..+.+.|+++.|+-+|++.++..|++..++..
T Consensus       310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~--------~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i  381 (1018)
T KOG2002|consen  310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNF--------VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI  381 (1018)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccCCCCc--------cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence            56789999999999999999999998876550        2234779999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|..|+.
T Consensus       382 LG~Lya~  388 (1018)
T KOG2002|consen  382 LGCLYAH  388 (1018)
T ss_pred             HHhHHHh
Confidence            9998863

>PRK15331 chaperone protein SicA; Provisional

Probab=98.51  E-value=6.9e-07  Score=51.76  Aligned_cols=65  Identities=11%  Similarity=0.006  Sum_probs=55.2

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   78 (90)
                      ..+|.+++..++|++|+..|.-+..+.+++         +...+..|.|+..+|+.+.|..+|+.++. .|.+..
T Consensus        75 ~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d---------p~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331         75 MGLAAVCQLKKQFQKACDLYAVAFTLLKND---------YRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccCC---------CCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence            478999999999999999999999988755         22238899999999999999999999987 454433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.50  E-value=1e-07  Score=41.48  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHH
Q psy8498          22 CFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL   63 (90)
Q Consensus        22 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~   63 (90)
                      +|++|+++.|++         +..++++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n---------~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNN---------AEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCC---------HHHHHHHHHHHHHCcCHHhhc
Confidence            488999999988         556699999999999999986

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=98.50  E-value=3.7e-07  Score=40.08  Aligned_cols=28  Identities=50%  Similarity=0.802  Sum_probs=24.3

Q ss_pred             HHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498          46 LNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus        46 ~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      +.+||.+|.++|+|++|+++|++++.+.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            5889999999999999999999977654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.46  E-value=2.5e-06  Score=55.69  Aligned_cols=77  Identities=26%  Similarity=0.097  Sum_probs=65.4

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      -++.++...++-.+|++...++++..|..         ...+...+.++...++++.|+...++++.+.|.+..+|..++
T Consensus       205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La  275 (395)
T PF09295_consen  205 LLARVYLLMNEEVEAIRLLNEALKENPQD---------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA  275 (395)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            35777777888888888888888665544         445688899999999999999999999999999999999999


Q ss_pred             HHHhcC
Q psy8498          85 VKEGVL   90 (90)
Q Consensus        85 ~~~~~~   90 (90)
                      .+|..+
T Consensus       276 ~~Yi~~  281 (395)
T PF09295_consen  276 ECYIQL  281 (395)
T ss_pred             HHHHhc
Confidence            998753

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.46  E-value=6.3e-07  Score=44.02  Aligned_cols=42  Identities=19%  Similarity=0.147  Sum_probs=39.1

Q ss_pred             hHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        48 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      .+|..+.+.|++++|++.|+++++.+|+++.++..+|.++..
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~   43 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ   43 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999998753

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.46  E-value=1.1e-06  Score=54.96  Aligned_cols=67  Identities=18%  Similarity=0.281  Sum_probs=53.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-cCHHHHHHHHHHHHhhC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-KKYEEALEFHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~   73 (90)
                      +.+.+.++.+. ++++|+++|++|+++....+..   ...+.++.++|.+|... |++++|+++|++|+.+.
T Consensus        78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~---~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y  145 (282)
T PF14938_consen   78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF---SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY  145 (282)
T ss_dssp             HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H---HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            45566776655 9999999999999998877543   44467789999999999 99999999999999874

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=3e-06  Score=53.02  Aligned_cols=74  Identities=15%  Similarity=0.042  Sum_probs=47.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc---CHHHHHHHHHHHHhhCCCChHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      +.-+|.+|...|+++.|...|.+|+++.+++         +.++.-+|+++..+.   ...++...+++++..+|.+..+
T Consensus       159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n---------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         159 WDLLGRAYMALGRASDALLAYRNALRLAGDN---------PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            4568999999999999999999999999987         222233444433322   2344445555555555555544


Q ss_pred             HHHHHH
Q psy8498          80 FCCIVV   85 (90)
Q Consensus        80 ~~~l~~   85 (90)
                      .+-+|+
T Consensus       230 l~lLA~  235 (287)
T COG4235         230 LSLLAF  235 (287)
T ss_pred             HHHHHH
Confidence            444443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.45  E-value=2.8e-07  Score=39.73  Aligned_cols=31  Identities=16%  Similarity=0.006  Sum_probs=27.5

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQ   32 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   32 (90)
                      .+.++|.+|..+|++++|+.+|++++++.|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            3678999999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1130|consensus

Probab=98.44  E-value=1.5e-06  Score=57.12  Aligned_cols=84  Identities=15%  Similarity=0.169  Sum_probs=65.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC------C
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------M   75 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~   75 (90)
                      +..|+|.+|.-.|+++.|+++|++++.+..+.++...  . +...+.+|+.|.-..++++|+.|+++=+.|..      .
T Consensus       237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v--E-AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG  313 (639)
T KOG1130|consen  237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV--E-AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG  313 (639)
T ss_pred             hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH--H-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3568999999999999999999999999888876532  2 33458899999999999999999999887643      3


Q ss_pred             ChHHHHHHHHHHh
Q psy8498          76 KASTFCCIVVKEG   88 (90)
Q Consensus        76 ~~~~~~~l~~~~~   88 (90)
                      ...+.+.+|..+.
T Consensus       314 e~RacwSLgna~~  326 (639)
T KOG1130|consen  314 ELRACWSLGNAFN  326 (639)
T ss_pred             hHHHHHHHHHHHH
Confidence            4455666666553

>KOG2003|consensus

Probab=98.44  E-value=4e-07  Score=60.41  Aligned_cols=80  Identities=20%  Similarity=0.133  Sum_probs=65.9

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ++.|-|.+-...|++++|.+.|++|++....-         ...++|+|..+..+|+.++|+++|-+.-.+--++...++
T Consensus       492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~  562 (840)
T KOG2003|consen  492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLV  562 (840)
T ss_pred             HhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence            45677888889999999999999999864322         345699999999999999999999987666557888888


Q ss_pred             HHHHHHhcC
Q psy8498          82 CIVVKEGVL   90 (90)
Q Consensus        82 ~l~~~~~~~   90 (90)
                      .++.+|-+|
T Consensus       563 qianiye~l  571 (840)
T KOG2003|consen  563 QIANIYELL  571 (840)
T ss_pred             HHHHHHHHh
Confidence            998888654

>KOG1129|consensus

Probab=98.43  E-value=2.3e-07  Score=59.17  Aligned_cols=85  Identities=13%  Similarity=-0.008  Sum_probs=57.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC--------------cc-----------hhhHHHHHHhHHHHHHHhc
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE--------------II-----------ADKWEPLLNNLGHVNRKLK   57 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~-----------~~~~~~~~~~lg~~~~~~g   57 (90)
                      +..++.++..++++++|.++|+.+++..+.+-..              +.           ....+..+.|+|.|..-.+
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq  372 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ  372 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence            3467889999999999999999999987775211              00           0001334577777777777


Q ss_pred             CHHHHHHHHHHHHhhCC---CChHHHHHHHHHH
Q psy8498          58 KYEEALEFHKQALVVAP---MKASTFCCIVVKE   87 (90)
Q Consensus        58 ~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~   87 (90)
                      +++-++..|++|+....   ..+..|+++|++.
T Consensus       373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~va  405 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVA  405 (478)
T ss_pred             chhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence            77777777777776643   2345677777653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.39  E-value=3.8e-06  Score=47.62  Aligned_cols=78  Identities=15%  Similarity=0.015  Sum_probs=56.7

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..+|.++...|++++|...|+++++..++.      .....+..++|.++..+|++++|+..+++. .-.+-.+......
T Consensus        52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~  124 (145)
T PF09976_consen   52 LQLAKAAYEQGDYDEAKAALEKALANAPDP------ELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELL  124 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHH
Confidence            457888999999999999999999865332      222345688999999999999999999662 2233344555566


Q ss_pred             HHHHh
Q psy8498          84 VVKEG   88 (90)
Q Consensus        84 ~~~~~   88 (90)
                      |.++.
T Consensus       125 Gdi~~  129 (145)
T PF09976_consen  125 GDIYL  129 (145)
T ss_pred             HHHHH
Confidence            66653

>KOG2076|consensus

Probab=98.37  E-value=3e-06  Score=59.26  Aligned_cols=79  Identities=18%  Similarity=0.139  Sum_probs=66.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.+++..+...|.|.+|+.+|..+.+..+...    ..    ++..+|.||..+|.+++|+.+|++++.+.|.+..+...
T Consensus       417 ~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~----~~----vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~  488 (895)
T KOG2076|consen  417 YLDLADALTNIGKYKEALRLLSPITNREGYQN----AF----VWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT  488 (895)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhcCccccc----hh----hhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh
Confidence            45788999999999999999998887644431    22    34899999999999999999999999999999999888


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      ++.++-.
T Consensus       489 Lasl~~~  495 (895)
T KOG2076|consen  489 LASLYQQ  495 (895)
T ss_pred             HHHHHHh
Confidence            8877653

>KOG3060|consensus

Probab=98.36  E-value=3.7e-06  Score=51.88  Aligned_cols=76  Identities=16%  Similarity=0.077  Sum_probs=57.3

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC---HHHHHHHHHHHHhhCCCChH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK---YEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~   78 (90)
                      +++.++.+|...|+|++|.-|+++.+=+.|.+         +.++.++|.+++-+|.   ++-|.++|.++++++|.+..
T Consensus       156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n---------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r  226 (289)
T KOG3060|consen  156 AWHELAEIYLSEGDFEKAAFCLEELLLIQPFN---------PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR  226 (289)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence            35667888888888888888888888877765         5566777888777765   55688888888888887777


Q ss_pred             HHHHHHHH
Q psy8498          79 TFCCIVVK   86 (90)
Q Consensus        79 ~~~~l~~~   86 (90)
                      +++.|-.|
T Consensus       227 al~GI~lc  234 (289)
T KOG3060|consen  227 ALFGIYLC  234 (289)
T ss_pred             HHHHHHHH
Confidence            77666544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.35  E-value=6.3e-06  Score=48.45  Aligned_cols=60  Identities=23%  Similarity=0.166  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-----------HHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498          16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-----------YEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus        16 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      +++|+..|++|+.+.|+.         ..++.++|++|..++.           |++|.++|++|...+|++......+.
T Consensus        51 iedAisK~eeAL~I~P~~---------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNK---------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            456788888888888776         4455889999888776           88999999999999998765544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.35  E-value=6.8e-07  Score=38.32  Aligned_cols=30  Identities=17%  Similarity=0.000  Sum_probs=26.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ   32 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   32 (90)
                      +..+|.++...|++++|+++|++++++.|+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            568999999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN02789 farnesyltranstransferase

Probab=98.32  E-value=7.7e-06  Score=52.18  Aligned_cols=69  Identities=12%  Similarity=0.007  Sum_probs=37.7

Q ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498           9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVAPMKASTFCCIVVK   86 (90)
Q Consensus         9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~   86 (90)
                      ++...+++++|+..+.+++++.|..     .+.|    +..|.++..+| +++++++++.++++.+|++..++...+.+
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~-----ytaW----~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~  115 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGN-----YTVW----HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWL  115 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchh-----HHHH----HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence            3444555666666666666665555     2233    55555555555 34555555555555555555555544433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.32  E-value=4e-06  Score=59.39  Aligned_cols=45  Identities=9%  Similarity=0.020  Sum_probs=42.3

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      +++.+|.||.++|++++|...|+++++++|+++.++.++|..++.
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            568899999999999999999999999999999999999998864

>KOG4648|consensus

Probab=98.32  E-value=8.8e-07  Score=57.00  Aligned_cols=30  Identities=17%  Similarity=0.145  Sum_probs=26.1

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ..-|.-|+++|.|++|+.||.+++...|-+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~N  130 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHN  130 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCC
Confidence            345788999999999999999999998865

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.31  E-value=7.1e-06  Score=50.82  Aligned_cols=73  Identities=16%  Similarity=0.028  Sum_probs=64.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ..=||.++..+|+|++|...|..+.+-.|+....      +..++.+|.+..++|+.++|...+++.++-.|..+.+..
T Consensus       181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA------pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA------PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            4458999999999999999999999988887544      556799999999999999999999999999998776644

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.31  E-value=1.6e-06  Score=39.62  Aligned_cols=31  Identities=13%  Similarity=-0.122  Sum_probs=29.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      +..+|.+|...|++++|++.|+++++..|++
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            5678999999999999999999999999987

>KOG4234|consensus

Probab=98.30  E-value=8.4e-06  Score=49.08  Aligned_cols=72  Identities=25%  Similarity=0.186  Sum_probs=62.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|-|.+..+.+.++.|+.-..+++++-|..         .+.+.+.+.+|.++..|++|+..|++.++++|....+.-.
T Consensus       137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty---------~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~  207 (271)
T KOG4234|consen  137 YSNRAAALIKLRKWESAIEDCSKAIELNPTY---------EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA  207 (271)
T ss_pred             HhhhHHHHHHhhhHHHHHHHHHhhHhcCchh---------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence            4577889999999999999999999998776         5566888999999999999999999999999976655544


Q ss_pred             H
Q psy8498          83 I   83 (90)
Q Consensus        83 l   83 (90)
                      +
T Consensus       208 i  208 (271)
T KOG4234|consen  208 I  208 (271)
T ss_pred             H
Confidence            3

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.28  E-value=6.1e-06  Score=58.25  Aligned_cols=84  Identities=11%  Similarity=0.125  Sum_probs=57.2

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC--------------cc-----------hhhHHHHHHhHHHHHHHhcCH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGE--------------II-----------ADKWEPLLNNLGHVNRKLKKY   59 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~-----------~~~~~~~~~~lg~~~~~~g~~   59 (90)
                      ..+++..+.|++++|+..|+++++..|.....              ..           .......+..+|.++..+|++
T Consensus        39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy  118 (822)
T PRK14574         39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW  118 (822)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence            34666677777777777777777666664100              00           001112234457799999999


Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          60 EEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        60 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      ++|++.|+++++.+|+++.++..++.++.
T Consensus       119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~  147 (822)
T PRK14574        119 DQALALWQSSLKKDPTNPDLISGMIMTQA  147 (822)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Confidence            99999999999999999988887766654

>KOG4162|consensus

Probab=98.27  E-value=5.1e-06  Score=57.48  Aligned_cols=73  Identities=16%  Similarity=0.118  Sum_probs=48.5

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHH--HHHHHHhhCCCChHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE--FHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~l   83 (90)
                      .|..+...|++++|...|..|+.+.|+.         ..++..+|.++.+.|+..-|..  +...+++++|.++.+|+.+
T Consensus       690 ~G~~~~~~~~~~EA~~af~~Al~ldP~h---------v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L  760 (799)
T KOG4162|consen  690 RGLLLEVKGQLEEAKEAFLVALALDPDH---------VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL  760 (799)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCCCC---------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            4777888888999999999999888876         3334555555555555555555  5555556666556666555


Q ss_pred             HHHH
Q psy8498          84 VVKE   87 (90)
Q Consensus        84 ~~~~   87 (90)
                      |.+.
T Consensus       761 G~v~  764 (799)
T KOG4162|consen  761 GEVF  764 (799)
T ss_pred             HHHH
Confidence            5554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.27  E-value=5.5e-06  Score=52.64  Aligned_cols=67  Identities=9%  Similarity=-0.061  Sum_probs=55.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      .+.+|.++...|++++|+.+++++++..|..     .......+..+|.++..+|++++|++.|++++...|
T Consensus       151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-----SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-----cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            4678999999999999999999999987652     111123456899999999999999999999987665

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.26  E-value=1.1e-05  Score=44.64  Aligned_cols=63  Identities=24%  Similarity=0.112  Sum_probs=52.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      +.++|..+...|++++|+..+++++...|+....      ......++.++...|++++|++.+-+++.
T Consensus        41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~------~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELN------AALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999877764222      22335688999999999999999998875

>KOG1156|consensus

Probab=98.25  E-value=5.4e-06  Score=56.52  Aligned_cols=74  Identities=18%  Similarity=0.077  Sum_probs=52.5

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      .|..+..+|+-++|..+.+.+++..+..         ..|++.+|.+++...+|++|+.+|+.|+.+.|+|-..+.-++.
T Consensus        47 kGL~L~~lg~~~ea~~~vr~glr~d~~S---------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl  117 (700)
T KOG1156|consen   47 KGLTLNCLGKKEEAYELVRLGLRNDLKS---------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL  117 (700)
T ss_pred             ccchhhcccchHHHHHHHHHHhccCccc---------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            4666777777777777777777754443         3345777888888888888888888888777777777666665


Q ss_pred             HHh
Q psy8498          86 KEG   88 (90)
Q Consensus        86 ~~~   88 (90)
                      .++
T Consensus       118 LQ~  120 (700)
T KOG1156|consen  118 LQI  120 (700)
T ss_pred             HHH
Confidence            543

>KOG4162|consensus

Probab=98.25  E-value=3.8e-06  Score=58.08  Aligned_cols=68  Identities=22%  Similarity=0.186  Sum_probs=61.9

Q ss_pred             chhhHHHHHHhhCCHHHHHH--HHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498           2 DLDNVELSSDKSFSYTVAEN--CFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   78 (90)
                      ++..+|.++.+.|+..-|+.  ..+.++++.|.+     .+.|    +.+|.++.++|+.++|.++|+-|+++.+.+|.
T Consensus       720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-----~eaW----~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLN-----HEAW----YYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-----HHHH----HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            35788999999999999999  999999999988     6777    99999999999999999999999999887764

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.25  E-value=4.7e-06  Score=59.07  Aligned_cols=61  Identities=11%  Similarity=0.120  Sum_probs=56.3

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ++..+|.+|.++|++++|...|++++++.|.+         +.+++++|..|... +.++|+.++.+|+..
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDN---------PEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999877         77789999999999 999999999999965

>KOG0545|consensus

Probab=98.22  E-value=3.5e-05  Score=47.74  Aligned_cols=86  Identities=22%  Similarity=0.204  Sum_probs=70.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhC--CCcchhhH-------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLG--GEIIADKW-------EPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ++.-|.-+...|+|.+|...|+.|+-......  ..+....|       ...+.|++.|+...|+|=++++.....+...
T Consensus       181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~  260 (329)
T KOG0545|consen  181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH  260 (329)
T ss_pred             HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence            45567888999999999999999998887761  11112222       3356889999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHh
Q psy8498          74 PMKASTFCCIVVKEG   88 (90)
Q Consensus        74 ~~~~~~~~~l~~~~~   88 (90)
                      |.+..+++..|-+++
T Consensus       261 ~~nvKA~frRakAha  275 (329)
T KOG0545|consen  261 PGNVKAYFRRAKAHA  275 (329)
T ss_pred             CchHHHHHHHHHHHH
Confidence            999999998887765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.21  E-value=3.3e-06  Score=36.20  Aligned_cols=31  Identities=19%  Similarity=0.087  Sum_probs=28.2

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQ   32 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   32 (90)
                      ++..+|.+|...|++++|+.+|++++++.|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3678999999999999999999999999873

...

>KOG1128|consensus

Probab=98.20  E-value=3e-06  Score=58.32  Aligned_cols=71  Identities=13%  Similarity=0.093  Sum_probs=62.0

Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      ....++|+++.++++..+++.|-.     ..    +++++|.+..+.++++.|.++|.+++.++|++..++.|++..|..
T Consensus       495 ~~~~~~fs~~~~hle~sl~~nplq-----~~----~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~  565 (777)
T KOG1128|consen  495 ILSNKDFSEADKHLERSLEINPLQ-----LG----TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR  565 (777)
T ss_pred             cccchhHHHHHHHHHHHhhcCccc-----hh----HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence            444789999999999999987765     34    449999999999999999999999999999999999999887753

>KOG1156|consensus

Probab=98.19  E-value=5.5e-06  Score=56.47  Aligned_cols=78  Identities=22%  Similarity=0.329  Sum_probs=70.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +|-+|.++..-.+|++|++||+.|+++.+++         ..++..++.+...+|+++...+.-.+-+++.|.+-..|..
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN---------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~  148 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDN---------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIG  148 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence            5788999999999999999999999999888         5566999999999999999999999999999988777887


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      .++.+.+
T Consensus       149 ~Avs~~L  155 (700)
T KOG1156|consen  149 FAVAQHL  155 (700)
T ss_pred             HHHHHHH
Confidence            7776654

>KOG0551|consensus

Probab=98.17  E-value=1.4e-05  Score=51.02  Aligned_cols=79  Identities=20%  Similarity=0.065  Sum_probs=66.2

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      .-|.-|.+..+|..|+.+|.++++....+     ...-+.+|+|.+.+....|+|..|+....+++.++|.+..+++.-+
T Consensus        86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   86 EEGNEYFKEKRYKDAVESYTEGLKKKCAD-----PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            34777888899999999999999876655     2333678899999999999999999999999999999988887666


Q ss_pred             HHHh
Q psy8498          85 VKEG   88 (90)
Q Consensus        85 ~~~~   88 (90)
                      .|.-
T Consensus       161 kc~~  164 (390)
T KOG0551|consen  161 KCLL  164 (390)
T ss_pred             HHHH
Confidence            6543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.17  E-value=7e-06  Score=36.55  Aligned_cols=31  Identities=42%  Similarity=0.587  Sum_probs=27.0

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      +.+++++|.+|..+|++++|+.++++++.+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4567999999999999999999999999764

>KOG2076|consensus

Probab=98.16  E-value=3.4e-05  Score=54.26  Aligned_cols=70  Identities=17%  Similarity=0.115  Sum_probs=44.3

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..|......|++++|++.+.++++..|..         +..+..||.+|..+|+.+++..+.-.|--++|++..-|..+
T Consensus       144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~---------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l  213 (895)
T KOG2076|consen  144 GEANNLFARGDLEEAEEILMEVIKQDPRN---------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL  213 (895)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCccc---------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            45666677788888888888888888876         22335556665555555555555555555555554444433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.14  E-value=1.2e-05  Score=45.59  Aligned_cols=58  Identities=16%  Similarity=0.003  Sum_probs=45.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      ..+++.++...|+|++|+..++..    +..  .    ..+.....+|.++...|++++|+..|++|+
T Consensus        88 ~l~LA~~~~~~~~~d~Al~~L~~~----~~~--~----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEALATLQQI----PDE--A----FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhc----cCc--c----hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            357899999999999999998651    111  1    113345779999999999999999999985

>KOG1130|consensus

Probab=98.14  E-value=2.6e-06  Score=55.99  Aligned_cols=69  Identities=22%  Similarity=0.189  Sum_probs=58.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ++-|+|..|.-.|+|+.|+..-+.=+++..+.++.  ... ...+.|+|+++.-+|+++.|+++|++++.+.
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr--Aae-RRA~sNlgN~hiflg~fe~A~ehYK~tl~LA  265 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR--AAE-RRAHSNLGNCHIFLGNFELAIEHYKLTLNLA  265 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH--HHH-HHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence            35688999999999999999999999999988665  222 4568999999999999999999999987553

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=98.14  E-value=9.6e-06  Score=34.31  Aligned_cols=31  Identities=29%  Similarity=0.446  Sum_probs=28.4

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      ++.++|.++.+.|++++|++.|++.+...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3588999999999999999999999998885

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.13  E-value=2.9e-05  Score=45.71  Aligned_cols=65  Identities=22%  Similarity=0.205  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC----------HHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498          16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK----------YEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus        16 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      ++.|.+.++..+...|.+         +..+++.|.++.++.+          +++|+.-|++|+.++|+...+++++|.
T Consensus         7 FE~ark~aea~y~~nP~D---------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLD---------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT----------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHh---------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            455666666666665554         3445777777776644          567888888899999999999999999


Q ss_pred             HHhc
Q psy8498          86 KEGV   89 (90)
Q Consensus        86 ~~~~   89 (90)
                      ++..
T Consensus        78 A~ts   81 (186)
T PF06552_consen   78 AYTS   81 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.12  E-value=3.8e-05  Score=36.61  Aligned_cols=37  Identities=24%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      +++.+|..++++|+|++|.++.+.+|++.|++..+..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            4588999999999999999999999999999887654

>KOG3824|consensus

Probab=98.11  E-value=9.4e-06  Score=51.74  Aligned_cols=70  Identities=19%  Similarity=0.137  Sum_probs=61.8

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      .+.-..+.|+.++|.+.|+.|+.+.|+.         +.++..+|.+....++.-+|..+|.+|+.++|.+..++.+.+
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~---------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALAPTN---------PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcCCCC---------HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3444567899999999999999999988         666799999999999999999999999999999999887754

>KOG4642|consensus

Probab=98.11  E-value=5.4e-06  Score=50.86  Aligned_cols=74  Identities=18%  Similarity=0.109  Sum_probs=65.0

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      -|.-|.....|+.|+.+|.+|+.+.|..         ++.+.|-+.||.+..+|+.+.....++++++|+...+++.+|.
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~---------~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTV---------ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCc---------chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence            3566777889999999999999998776         5667999999999999999999999999999998888888887


Q ss_pred             HHh
Q psy8498          86 KEG   88 (90)
Q Consensus        86 ~~~   88 (90)
                      +..
T Consensus        87 ~~l   89 (284)
T KOG4642|consen   87 WLL   89 (284)
T ss_pred             HHH
Confidence            653

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=98.10  E-value=8.9e-05  Score=39.23  Aligned_cols=65  Identities=25%  Similarity=0.266  Sum_probs=53.0

Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498          10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus        10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ....|||..|.+.+.+.++.................+.++|.++...|++++|+..+++++.+..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            45689999999999999999887755431123344568899999999999999999999998864

>smart00028 TPR Tetratricopeptide repeats

Probab=98.10  E-value=9.7e-06  Score=33.20  Aligned_cols=31  Identities=45%  Similarity=0.658  Sum_probs=28.4

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      .+.++|.++..+|++++|..++++++++.|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4588999999999999999999999998875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.10  E-value=2.2e-05  Score=51.32  Aligned_cols=60  Identities=20%  Similarity=0.139  Sum_probs=52.3

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      .-+|.++...+++++|.++|+++++..|+.          ..+..++.++.++|+.++|.++|++++.+.
T Consensus       332 l~lgrl~~~~~~~~~A~~~le~al~~~P~~----------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        332 STLGQLLMKHGEWQEASLAFRAALKQRPDA----------YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            356999999999999999999999987764          223679999999999999999999998764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.09  E-value=8.4e-06  Score=36.30  Aligned_cols=32  Identities=25%  Similarity=0.204  Sum_probs=26.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      +++++|.+|...|++++|+.++++++++....
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            57899999999999999999999999998765

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.08  E-value=4.8e-05  Score=53.91  Aligned_cols=75  Identities=12%  Similarity=-0.116  Sum_probs=66.2

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      .++.++.-.|++.+|++.+++.+...|.+         ..+...+|.++...|.+.+|...++.+..++|.+..+....|
T Consensus       421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n---------~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~  491 (822)
T PRK14574        421 LLVQSLVALNDLPTAQKKLEDLSSTAPAN---------QNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA  491 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence            35778888999999999999999999988         555689999999999999999999999999999888888777


Q ss_pred             HHHh
Q psy8498          85 VKEG   88 (90)
Q Consensus        85 ~~~~   88 (90)
                      .+.-
T Consensus       492 ~~al  495 (822)
T PRK14574        492 ETAM  495 (822)
T ss_pred             HHHH
Confidence            6653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.06  E-value=6.6e-05  Score=50.76  Aligned_cols=73  Identities=12%  Similarity=0.053  Sum_probs=62.0

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      ...++.+.|++++|+.++++.-+...+.         ...+...|.++.++|++++|...|+..+..+|++..-+..+..
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk---------~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~   80 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQILDK---------LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE   80 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhhCCCH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            4678899999999999998866665544         4456889999999999999999999999999999888877776


Q ss_pred             HH
Q psy8498          86 KE   87 (90)
Q Consensus        86 ~~   87 (90)
                      +.
T Consensus        81 ~~   82 (517)
T PF12569_consen   81 AL   82 (517)
T ss_pred             HH
Confidence            65

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10941 hypothetical protein; Provisional

Probab=98.06  E-value=6.9e-05  Score=46.83  Aligned_cols=72  Identities=13%  Similarity=-0.038  Sum_probs=63.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|+..+|.+.++++.|+.+.+..+.+.|+.     ...+    ...|.+|.++|.+..|...++.-++..|+++.+-..
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d-----p~e~----RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPED-----PYEI----RDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-----HHHH----HHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            6789999999999999999999999999987     3333    778999999999999999999999999988877544


Q ss_pred             H
Q psy8498          83 I   83 (90)
Q Consensus        83 l   83 (90)
                      .
T Consensus       255 k  255 (269)
T PRK10941        255 R  255 (269)
T ss_pred             H
Confidence            3

>TIGR00540 hemY_coli hemY protein

Probab=98.05  E-value=4e-05  Score=50.20  Aligned_cols=83  Identities=13%  Similarity=-0.011  Sum_probs=57.1

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC----C-----------------------cchhhHH--HHHHhHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGG----E-----------------------IIADKWE--PLLNNLGHVNRK   55 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~-----------------------~~~~~~~--~~~~~lg~~~~~   55 (90)
                      .++..+...|++++|++.++++++..|+...    .                       ...+.-+  ..+..+|.++.+
T Consensus       268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~  347 (409)
T TIGR00540       268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK  347 (409)
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence            4566777778888888888877776665531    0                       0000113  456788999999


Q ss_pred             hcCHHHHHHHHH--HHHhhCCCChHHHHHHHHHHh
Q psy8498          56 LKKYEEALEFHK--QALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        56 ~g~~~~A~~~~~--~al~~~~~~~~~~~~l~~~~~   88 (90)
                      .|++++|.++|+  ++++..|+... +..+|.++.
T Consensus       348 ~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~  381 (409)
T TIGR00540       348 HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFD  381 (409)
T ss_pred             cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHH
Confidence            999999999999  57778875544 447776654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.03  E-value=9.6e-05  Score=48.33  Aligned_cols=74  Identities=11%  Similarity=-0.061  Sum_probs=56.9

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK   86 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~   86 (90)
                      +.+....|+++.|..+|+++.+..|+..       + ......+..+...|++++|...+++..+.+|+++.++..++.+
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~-------~-~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~  196 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQ-------L-PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA  196 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcch-------H-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            5555888999999999999887655431       0 1113358899999999999999999999999999888777766


Q ss_pred             Hh
Q psy8498          87 EG   88 (90)
Q Consensus        87 ~~   88 (90)
                      +.
T Consensus       197 ~~  198 (398)
T PRK10747        197 YI  198 (398)
T ss_pred             HH
Confidence            54

>TIGR00540 hemY_coli hemY protein

Probab=98.02  E-value=8.7e-05  Score=48.63  Aligned_cols=75  Identities=9%  Similarity=-0.124  Sum_probs=57.1

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      .|.++..+|+++.|..+++++.+..|+.+.        .+....+.++...|++++|.+.+++.++..|+++.++..++.
T Consensus       124 aA~aa~~~g~~~~A~~~l~~a~~~~p~~~l--------~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~  195 (409)
T TIGR00540       124 AAEAAQQRGDEARANQHLEEAAELAGNDNI--------LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEE  195 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCcCch--------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            467778888888888888888776554310        112335888888999999999999999999999888877777


Q ss_pred             HHh
Q psy8498          86 KEG   88 (90)
Q Consensus        86 ~~~   88 (90)
                      ++.
T Consensus       196 ~~~  198 (409)
T TIGR00540       196 AYI  198 (409)
T ss_pred             HHH
Confidence            654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.01  E-value=5.5e-05  Score=51.13  Aligned_cols=64  Identities=16%  Similarity=0.047  Sum_probs=57.4

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      .-++..|...|++++|+++..+||++-|..         +..+..-|.++.+.|++.+|.++.+.|..+++.+
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL---------VELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            456888999999999999999999997765         5667899999999999999999999999998754

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.00  E-value=8e-05  Score=49.49  Aligned_cols=76  Identities=17%  Similarity=0.051  Sum_probs=65.1

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ...+..+...|++++|+..++..++..|++         +-.....+.++.+.++.++|.+.+++++.++|..+....++
T Consensus       310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N---------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~  380 (484)
T COG4783         310 YGRALQTYLAGQYDEALKLLQPLIAAQPDN---------PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL  380 (484)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence            345778899999999999999999988876         33447789999999999999999999999999887777788


Q ss_pred             HHHHh
Q psy8498          84 VVKEG   88 (90)
Q Consensus        84 ~~~~~   88 (90)
                      |.++.
T Consensus       381 a~all  385 (484)
T COG4783         381 AQALL  385 (484)
T ss_pred             HHHHH
Confidence            87764

>KOG0624|consensus

Probab=98.00  E-value=2.1e-05  Score=50.85  Aligned_cols=67  Identities=15%  Similarity=-0.049  Sum_probs=46.0

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhH------------------------------HHHHHhHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKW------------------------------EPLLNNLGHVNR   54 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------------------------~~~~~~lg~~~~   54 (90)
                      .+|.-+...|++..|+++|..|++..|++     ....                              ...-...|.++.
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~dp~~-----Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll  117 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGDPNN-----YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL  117 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchh-----HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence            57888899999999999999999998876     1110                              001133366666


Q ss_pred             HhcCHHHHHHHHHHHHhhCCCC
Q psy8498          55 KLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus        55 ~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      ++|++++|...|.+.++.+|++
T Consensus       118 K~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen  118 KQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             hcccHHHHHHHHHHHHhcCCCc
Confidence            6777777777777776666643

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.00  E-value=2.5e-05  Score=38.44  Aligned_cols=36  Identities=22%  Similarity=0.161  Sum_probs=33.1

Q ss_pred             HHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          54 RKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        54 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      .+.|++++|++.|+++++.+|+++.++..+|.++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~   37 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK   37 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            568999999999999999999999999999998753

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.00  E-value=1.9e-05  Score=49.80  Aligned_cols=47  Identities=32%  Similarity=0.367  Sum_probs=40.5

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      +.+++.++.++..+|+|++|.+.+++++..+|.++.++.++..+...
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~  247 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH  247 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            56678999999999999999999999999999999999998887543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174|consensus

Probab=97.99  E-value=6.3e-05  Score=49.62  Aligned_cols=70  Identities=17%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..++..+...|.+++++.++++.+...++.          ..++.+|.++.-.+.+++|.++|..|+.++|++-.+.-.+
T Consensus       442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~----------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  442 NLIAELCQVEGPTKDIIKLLEKHLIIFPDV----------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL  511 (564)
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHhhcccc----------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence            346778899999999999999999988763          4568899999999999999999999999999887766544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.99  E-value=6.6e-05  Score=46.36  Aligned_cols=77  Identities=17%  Similarity=0.091  Sum_probs=62.2

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH---H
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST---F   80 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~   80 (90)
                      -+-|..-.+.|+|++|++.|++..+..|.....      ..++..++.++++.+++++|+...++-+.+.|.++.+   +
T Consensus        38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            355777888999999999999999887766333      5567889999999999999999999999999966544   4


Q ss_pred             HHHHHH
Q psy8498          81 CCIVVK   86 (90)
Q Consensus        81 ~~l~~~   86 (90)
                      +..|.+
T Consensus       112 YlkgLs  117 (254)
T COG4105         112 YLKGLS  117 (254)
T ss_pred             HHHHHH
Confidence            444443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.98  E-value=9.3e-05  Score=41.79  Aligned_cols=60  Identities=17%  Similarity=0.000  Sum_probs=50.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      +..++..+...|++++|+..+++++...|-+         ...+..+-.++..+|+..+|++.|++...
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPYD---------EEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            3456778889999999999999999998877         55568899999999999999999999864

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1127|consensus

Probab=97.98  E-value=3.3e-05  Score=55.20  Aligned_cols=71  Identities=15%  Similarity=-0.021  Sum_probs=63.0

Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      -..+.+|++|++..+++++..|++     .-    ....+|..+...|+ .++|.+.|..|.+++|++.-++..++..|.
T Consensus        12 al~nk~YeealEqskkvLk~dpdN-----Yn----A~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye   82 (1238)
T KOG1127|consen   12 ALRNKEYEEALEQSKKVLKEDPDN-----YN----AQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYE   82 (1238)
T ss_pred             HHhhccHHHHHHHHHHHHhcCCCc-----ch----hhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence            356889999999999999999887     33    34889999999999 999999999999999999999999998875


Q ss_pred             c
Q psy8498          89 V   89 (90)
Q Consensus        89 ~   89 (90)
                      .
T Consensus        83 ~   83 (1238)
T KOG1127|consen   83 R   83 (1238)
T ss_pred             c
Confidence            3

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.98  E-value=2e-05  Score=39.34  Aligned_cols=41  Identities=24%  Similarity=0.201  Sum_probs=36.9

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          49 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        49 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      |..+|...+++++|++++++++.++|.++..+...|.++..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~   41 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ   41 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            35678899999999999999999999999999999988754

>KOG2471|consensus

Probab=97.97  E-value=3e-05  Score=51.99  Aligned_cols=86  Identities=15%  Similarity=0.044  Sum_probs=68.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh-h----CCCcc----hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ-L----GGEII----ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~----~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ++|+|-++.++|-|.-+..+|++|++.... .    .+...    ....-.+++|.|..|...|+.-.|.+||.++....
T Consensus       286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence            589999999999999999999999973332 1    11100    00112356899999999999999999999999998


Q ss_pred             CCChHHHHHHHHHHh
Q psy8498          74 PMKASTFCCIVVKEG   88 (90)
Q Consensus        74 ~~~~~~~~~l~~~~~   88 (90)
                      ..+|..|..++.|..
T Consensus       366 h~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  366 HRNPRLWLRLAECCI  380 (696)
T ss_pred             hcCcHHHHHHHHHHH
Confidence            889999999988764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.90  E-value=1.6e-05  Score=34.38  Aligned_cols=25  Identities=16%  Similarity=0.092  Sum_probs=22.7

Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          65 FHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        65 ~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      +|++|++++|+++.+++++|.++..
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~   25 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN   25 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999999864

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.89  E-value=1.4e-05  Score=33.83  Aligned_cols=31  Identities=16%  Similarity=0.095  Sum_probs=28.2

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQ   32 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   32 (90)
                      ++.++|.++...|++++|.+.|++.++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3568999999999999999999999998875

>PRK11906 transcriptional regulator; Provisional

Probab=97.88  E-value=6.8e-05  Score=49.72  Aligned_cols=65  Identities=22%  Similarity=0.136  Sum_probs=58.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      +..+|.+....++++.|...|++|+.+.|..         +.++...|.+..-.|+.++|.+..++|++++|.-
T Consensus       341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~---------A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDI---------ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHHhhcCCcc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            4567888899999999999999999998887         5556999999999999999999999999999943

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.87  E-value=0.00023  Score=40.50  Aligned_cols=69  Identities=10%  Similarity=-0.043  Sum_probs=59.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC---------------HHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK---------------YEEALEFHK   67 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---------------~~~A~~~~~   67 (90)
                      ...++-+|.+.++|++|+..+++-+++.|....-      .-+++..|.++.++..               ..+|...|+
T Consensus        50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v------dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~  123 (142)
T PF13512_consen   50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV------DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFE  123 (142)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc------cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHH
Confidence            3578999999999999999999999999998433      3456888999988887               899999999


Q ss_pred             HHHhhCCCCh
Q psy8498          68 QALVVAPMKA   77 (90)
Q Consensus        68 ~al~~~~~~~   77 (90)
                      +.+...|+..
T Consensus       124 ~lv~~yP~S~  133 (142)
T PF13512_consen  124 QLVRRYPNSE  133 (142)
T ss_pred             HHHHHCcCCh
Confidence            9999988654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.82  E-value=0.00084  Score=37.37  Aligned_cols=68  Identities=16%  Similarity=0.029  Sum_probs=55.5

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc--chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      .++.++...|+|++++..-.+++..+.+.+.-.  ....|..+-++-|..+...|+.++|+..|+.+-+.
T Consensus        60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            467788999999999999999999998885432  35678888899999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1941|consensus

Probab=97.81  E-value=0.00028  Score=46.09  Aligned_cols=69  Identities=19%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ++.++++.+..+|+...|.++.+++.++.-..++.   ...+.++..+|.+|+..|+.+.|..-|++|+...
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr---a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR---ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            56789999999999999999999999999888776   3345677889999999999999999999998653

>KOG4555|consensus

Probab=97.80  E-value=0.00025  Score=40.23  Aligned_cols=69  Identities=13%  Similarity=-0.039  Sum_probs=57.0

Q ss_pred             CchhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           1 MDLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         1 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ++++|-+..+.-+|+.++|+.-+.+|+++....     ....-..+..-|.+|+.+|+-+.|...|+.+-++..
T Consensus        78 SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-----trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen   78 SAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-----TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-----chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            367899999999999999999999999987544     222233467789999999999999999999987754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.78  E-value=5.3e-05  Score=47.79  Aligned_cols=68  Identities=25%  Similarity=0.151  Sum_probs=53.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCH-HHHHHHHHHHHhhCCCChHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY-EEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~   79 (90)
                      ++.++.++..+|+|++|+..++++++..|..         +.++.|+..+...+|+. +.+.++..+....+|+++-.
T Consensus       204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~---------~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  204 LNGLAVCHLQLGHYEEAEELLEEALEKDPND---------PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH---------HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            5678999999999999999999998765544         55668999999999998 66777888877788876643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3060|consensus

Probab=97.78  E-value=0.00037  Score=43.29  Aligned_cols=77  Identities=13%  Similarity=0.146  Sum_probs=59.5

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCC-------------C----------------cchhhHHHHHHhHHHHHHHhc
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGG-------------E----------------IIADKWEPLLNNLGHVNRKLK   57 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~----------------~~~~~~~~~~~~lg~~~~~~g   57 (90)
                      |+.+...|+|++|+++|...++-.|.+..             .                .-.+.|    ..++.+|...|
T Consensus        93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW----~eLaeiY~~~~  168 (289)
T KOG3060|consen   93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAW----HELAEIYLSEG  168 (289)
T ss_pred             HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHhHh
Confidence            56677788888888888887765555310             0                114445    88999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498          58 KYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      +|++|.=|+++.+-+.|-++..+..+|.++
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~  198 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVL  198 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999998887777777654

>KOG1127|consensus

Probab=97.78  E-value=4e-05  Score=54.77  Aligned_cols=76  Identities=18%  Similarity=0.130  Sum_probs=64.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +...|..|.+.+++..|+..|+.|+++.|.+     ...|    ..+|.+|-..|++..|++.|.++..++|.+.-..+.
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD-----~n~W----~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk  635 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-----YNLW----LGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFK  635 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchh-----HHHH----HHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHH
Confidence            3457888999999999999999999999988     4555    889999999999999999999999999977666666


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      .+...
T Consensus       636 ~A~~e  640 (1238)
T KOG1127|consen  636 EAVME  640 (1238)
T ss_pred             HHHHH
Confidence            55544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00027  Score=44.49  Aligned_cols=62  Identities=18%  Similarity=0.140  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      +.-+.-.+.-+...|.+     .+.|    .-||.+|..+|+++.|...|.+|.++.|+++..+..+|.++
T Consensus       139 ~~l~a~Le~~L~~nP~d-----~egW----~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL  200 (287)
T COG4235         139 EALIARLETHLQQNPGD-----AEGW----DLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL  200 (287)
T ss_pred             HHHHHHHHHHHHhCCCC-----chhH----HHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            33444444445544444     6677    88999999999999999999999999999999988887664

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.75  E-value=0.00043  Score=46.39  Aligned_cols=80  Identities=14%  Similarity=-0.035  Sum_probs=60.0

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC-ChHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-KASTFCCI   83 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l   83 (90)
                      .-|.++...|+.++|++.|++++.....-     .+....+++.+|.++.-+++|++|.++|.+..+.+.- .+.-.+..
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~  346 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA  346 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            45889999999999999999998644333     2233446799999999999999999999999987642 23334456


Q ss_pred             HHHHhc
Q psy8498          84 VVKEGV   89 (90)
Q Consensus        84 ~~~~~~   89 (90)
                      |.|+.+
T Consensus       347 a~c~~~  352 (468)
T PF10300_consen  347 AACLLM  352 (468)
T ss_pred             HHHHHh
Confidence            665543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.74  E-value=9.7e-05  Score=45.34  Aligned_cols=60  Identities=20%  Similarity=0.261  Sum_probs=53.2

Q ss_pred             HHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           8 LSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         8 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      ....+.+|.+.|.+.|.+++++.|+-     ...|    +++|....+.|+++.|.+.|++.++++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w-----~~gw----fR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEW-----AAGW----FRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchh-----hhhh----hhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34567899999999999999998876     4555    999999999999999999999999999854

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.73  E-value=0.00059  Score=42.04  Aligned_cols=68  Identities=12%  Similarity=-0.006  Sum_probs=54.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc------------------CHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK------------------KYEEALE   64 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g------------------~~~~A~~   64 (90)
                      ...+|.+|.+.++|++|+..|++.++..|+++.-      +.+++.+|.++..++                  ...+|+.
T Consensus        72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~  145 (243)
T PRK10866         72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR  145 (243)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence            3578999999999999999999999999998443      445688888765554                  1357889


Q ss_pred             HHHHHHhhCCCC
Q psy8498          65 FHKQALVVAPMK   76 (90)
Q Consensus        65 ~~~~al~~~~~~   76 (90)
                      .+++.+...|+.
T Consensus       146 ~~~~li~~yP~S  157 (243)
T PRK10866        146 DFSKLVRGYPNS  157 (243)
T ss_pred             HHHHHHHHCcCC
Confidence            999999998854

>KOG0550|consensus

Probab=97.72  E-value=0.00023  Score=46.84  Aligned_cols=63  Identities=22%  Similarity=0.098  Sum_probs=57.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      +-|.+.+....|+..+|+.-...|+++.+..         ...+...|.|+.-+++|++|.++|++|++...
T Consensus       290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~sy---------ikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  290 YGNRALVNIRLGRLREAISDCNEALKIDSSY---------IKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             HHHhHhhhcccCCchhhhhhhhhhhhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4578899999999999999999999997766         67789999999999999999999999998754

>KOG2376|consensus

Probab=97.72  E-value=0.00076  Score=46.12  Aligned_cols=75  Identities=19%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhC-----C-CcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLG-----G-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      +.|.+-++...|+|.+|++.+++|+++-.+.-     + +........+...++.++..+|+.++|...|...++.+|-+
T Consensus       178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence            45889999999999999999999977655541     1 12233445677889999999999999999999999988744


Q ss_pred             h
Q psy8498          77 A   77 (90)
Q Consensus        77 ~   77 (90)
                      .
T Consensus       258 ~  258 (652)
T KOG2376|consen  258 E  258 (652)
T ss_pred             c
Confidence            3

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.70  E-value=0.00056  Score=40.92  Aligned_cols=69  Identities=14%  Similarity=-0.003  Sum_probs=52.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-----------CHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----------KYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~   71 (90)
                      ...+|.++...|+|++|+..|++-++..|....      .+.+++.+|.++.++.           ...+|+..|++.+.
T Consensus        45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999998733      2455677888766553           45589999999999


Q ss_pred             hCCCCh
Q psy8498          72 VAPMKA   77 (90)
Q Consensus        72 ~~~~~~   77 (90)
                      ..|+..
T Consensus       119 ~yP~S~  124 (203)
T PF13525_consen  119 RYPNSE  124 (203)
T ss_dssp             H-TTST
T ss_pred             HCcCch
Confidence            988654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.69  E-value=0.0019  Score=39.17  Aligned_cols=71  Identities=17%  Similarity=0.115  Sum_probs=53.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh----CCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL----GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ...++=+|...|+.+....++++|++...+.    ..+.....-..+++-+|.+.++.|++++|+++|.+.+...
T Consensus       121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            3467788999999888888888888777765    1111112223466789999999999999999999998654

>PRK11906 transcriptional regulator; Provisional

Probab=97.67  E-value=0.00031  Score=46.73  Aligned_cols=66  Identities=11%  Similarity=-0.041  Sum_probs=56.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      .+-.+|.++.++|+++.+.+         +.++..+|.+..-.|+++.|...|++|+.++|+.+.+++..|.+..
T Consensus       318 ~~~~~a~~~A~rAveld~~D---------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~  383 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVD---------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF  383 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            44567888888888887776         6677999999999999999999999999999999999988887653

>KOG1941|consensus

Probab=97.66  E-value=0.00049  Score=44.97  Aligned_cols=70  Identities=17%  Similarity=0.076  Sum_probs=54.5

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhC-CCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLG-GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ..+|..+....|+++|..+..+|+++....+ ++.........++.++..++.+|+...|.++.+++.++.
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            3567778888888888888888888877664 333333444567889999999999999999999999875

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.63  E-value=0.00014  Score=44.46  Aligned_cols=71  Identities=18%  Similarity=0.146  Sum_probs=56.4

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      -|+.|...|-..-|.--|.+++.+.|+.         +.++|.+|.-+...|+|+.|.+.|.-.++++|...-++.|.|.
T Consensus        71 RGvlYDSlGL~~LAR~DftQaLai~P~m---------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          71 RGVLYDSLGLRALARNDFSQALAIRPDM---------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             hcchhhhhhHHHHHhhhhhhhhhcCCCc---------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            3556666666666777777888887766         7788999999999999999999999999999977666665543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.60  E-value=0.00035  Score=45.92  Aligned_cols=56  Identities=18%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK   67 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   67 (90)
                      +.-.+..+...++++.|+.+.+++.+..|..     ...|    ..|+.+|..+|++++|+-...
T Consensus       237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~-----f~~W----~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  237 LNLQAEFLLSKKKYELALEIAKKAVELSPSE-----FETW----YQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCchh-----HHHH----HHHHHHHHhcCCHHHHHHHHh
Confidence            3445778999999999999999999999988     5666    999999999999999997665

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.57  E-value=0.00053  Score=44.03  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=16.5

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      .-+|.+....|+|++|++.++.+++-+|
T Consensus       218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~  245 (389)
T COG2956         218 IILGRVELAKGDYQKAVEALERVLEQNP  245 (389)
T ss_pred             hhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence            3356666666666666666666665555

>smart00028 TPR Tetratricopeptide repeats

Probab=97.57  E-value=7.8e-05  Score=30.27  Aligned_cols=30  Identities=23%  Similarity=0.063  Sum_probs=26.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVK   31 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   31 (90)
                      .+.++|.++..++++++|+.+|++++++.|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            357899999999999999999999998754

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.52  E-value=0.0012  Score=46.92  Aligned_cols=68  Identities=9%  Similarity=-0.158  Sum_probs=55.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ...+|.++...|++++|...+++++......+...   .....+.++|.++...|++++|..++++++.+.
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~---~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH---YALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999887664331   112356889999999999999999999999863

>KOG1128|consensus

Probab=97.51  E-value=0.00017  Score=50.11  Aligned_cols=68  Identities=21%  Similarity=0.161  Sum_probs=59.9

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   78 (90)
                      .+.+.|-+..+.+++..|..+|...+.+.|++     .+.|    +|++.+|.+.|+..+|...+++|++.+-++..
T Consensus       521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-----~eaW----nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~  588 (777)
T KOG1128|consen  521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-----AEAW----NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ  588 (777)
T ss_pred             HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-----hhhh----hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe
Confidence            35678999999999999999999999999988     6677    99999999999999999999999988754433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.50  E-value=0.0046  Score=34.80  Aligned_cols=81  Identities=17%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcc-------------hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEII-------------ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      |......++.+.++..+++++.+....--...             ...+..+...++..+...|++++|++.+++++.++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d   92 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD   92 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            55566778999999999999998876522111             11123345667888999999999999999999999


Q ss_pred             CCChHHHHHHHHHH
Q psy8498          74 PMKASTFCCIVVKE   87 (90)
Q Consensus        74 ~~~~~~~~~l~~~~   87 (90)
                      |-+-..+..+-.++
T Consensus        93 P~~E~~~~~lm~~~  106 (146)
T PF03704_consen   93 PYDEEAYRLLMRAL  106 (146)
T ss_dssp             TT-HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            98777766554444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.48  E-value=0.0018  Score=46.07  Aligned_cols=69  Identities=17%  Similarity=0.033  Sum_probs=57.4

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      .+++.++...|++++|...+++++...+..+..   .....++..+|.++...|+.++|.+.+.+|+++...
T Consensus       695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~---~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        695 RNIARAQILLGQFDEAEIILEELNENARSLRLM---SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            467889999999999999999999987765433   122445688999999999999999999999988653

>KOG0624|consensus

Probab=97.46  E-value=0.00089  Score=43.57  Aligned_cols=71  Identities=11%  Similarity=-0.015  Sum_probs=51.6

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      +-.++..-+++.+|+....+++++.|++         +.++...+.+|.--..|+.|+..|++|.+.++++..+.-.+-.
T Consensus       313 ~c~C~~~d~~~~eAiqqC~evL~~d~~d---------v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~  383 (504)
T KOG0624|consen  313 LCTCYREDEQFGEAIQQCKEVLDIDPDD---------VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER  383 (504)
T ss_pred             eeecccccCCHHHHHHHHHHHHhcCchH---------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            3456667777888888888888877766         5556777888888888888888888888888776665544433

>KOG3785|consensus

Probab=97.44  E-value=0.00048  Score=44.98  Aligned_cols=69  Identities=19%  Similarity=0.066  Sum_probs=49.4

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      ....||..|+..++-.+...++..        .++-..+|.|++.+|+|++|+..|+-....+.-++....+++.|+
T Consensus        33 ls~rDytGAislLefk~~~~~EEE--------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~  101 (557)
T KOG3785|consen   33 LSNRDYTGAISLLEFKLNLDREEE--------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCK  101 (557)
T ss_pred             HhcccchhHHHHHHHhhccchhhh--------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHH
Confidence            346788888888877765433321        123356999999999999999999998876555556666776654

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=97.43  E-value=0.0028  Score=35.36  Aligned_cols=67  Identities=13%  Similarity=-0.010  Sum_probs=53.2

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC------cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGE------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      ..+|....+.+++-.++-+|++|+.+..+....      .....+....+|||.+++.+|+.+=.++|.+-|-
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS   77 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS   77 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence            457888899999999999999999999887321      1122233446899999999999999999987654

>KOG3785|consensus

Probab=97.43  E-value=0.0021  Score=42.12  Aligned_cols=23  Identities=13%  Similarity=0.017  Sum_probs=18.4

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALS   28 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~   28 (90)
                      +|.++...|+|++|...|..+.+
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~   85 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMN   85 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhc
Confidence            57788888888888888877665

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.41  E-value=0.0011  Score=42.57  Aligned_cols=79  Identities=11%  Similarity=-0.058  Sum_probs=52.4

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      .+-.+|....++++|++.-++..++.++.-.    ...+..+..++..+.-..+.+.|....++|++.+|+...+-..+|
T Consensus       146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~----~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG  221 (389)
T COG2956         146 QLLNIYQATREWEKAIDVAERLVKLGGQTYR----VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG  221 (389)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHcCCccch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence            4556677777777777776666666554421    222344566666666677888888888888888887776666666


Q ss_pred             HHH
Q psy8498          85 VKE   87 (90)
Q Consensus        85 ~~~   87 (90)
                      .+.
T Consensus       222 ~v~  224 (389)
T COG2956         222 RVE  224 (389)
T ss_pred             HHH
Confidence            554

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.39  E-value=0.0038  Score=34.14  Aligned_cols=75  Identities=15%  Similarity=0.035  Sum_probs=57.0

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-----------HHHHHHHHHHHHhhCC
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-----------YEEALEFHKQALVVAP   74 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~~   74 (90)
                      .+..+...|++-+|++..++.+...++....      +..+...|.++.++..           .-.|+++|.++..+.|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence            3567889999999999999999987766332      2445666777766554           4568899999999999


Q ss_pred             CChHHHHHHHHH
Q psy8498          75 MKASTFCCIVVK   86 (90)
Q Consensus        75 ~~~~~~~~l~~~   86 (90)
                      ..+..++.+|.=
T Consensus        76 ~~A~~L~~la~~   87 (111)
T PF04781_consen   76 DSAHSLFELASQ   87 (111)
T ss_pred             hHHHHHHHHHHH
Confidence            877777777653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.35  E-value=0.002  Score=43.81  Aligned_cols=44  Identities=11%  Similarity=-0.028  Sum_probs=37.2

Q ss_pred             HHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      .++..+|..+...|++++|...+++|+.++| +..+|..+|.++.
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~  464 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE  464 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            3456678888889999999999999999999 4778888887764

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.29  E-value=0.001  Score=43.40  Aligned_cols=60  Identities=20%  Similarity=0.166  Sum_probs=51.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      +.-+|..|.+.+.|.+|.++|+.|++..+.          .+.+..+|.++-++|+..+|-+.+++++.+
T Consensus       331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s----------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         331 LSTLGRLALKNKLWGKASEALEAALKLRPS----------ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcCCC----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            345899999999999999999999987554          334488999999999999999999999854

>KOG4648|consensus

Probab=97.29  E-value=0.0042  Score=40.63  Aligned_cols=69  Identities=19%  Similarity=0.042  Sum_probs=60.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      +.|-+.+|.+..+|..|+.-+..|+.+....         .+.|.+.|.+...+|...+|.+.++.+|++.|++....
T Consensus       134 ~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y---------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELk  202 (536)
T KOG4648|consen  134 HINRALAYLKQKSFAQAEEDCEAAIALDKLY---------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELK  202 (536)
T ss_pred             hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHH
Confidence            4578999999999999999999999986655         77789999999999999999999999999999765443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.24  E-value=0.0042  Score=37.39  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=19.3

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALS   28 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~   28 (90)
                      .+|....+.|++.+|+.+|++++.
T Consensus        94 rLa~al~elGr~~EA~~hy~qals  117 (251)
T COG4700          94 RLANALAELGRYHEAVPHYQQALS  117 (251)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHhc
Confidence            567778888888888888888775

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.21  E-value=0.0029  Score=41.44  Aligned_cols=81  Identities=20%  Similarity=0.085  Sum_probs=57.7

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhh---------C--CC-----------cchhhHHHHHHhHHHHHHHhcCHHHHHH
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQL---------G--GE-----------IIADKWEPLLNNLGHVNRKLKKYEEALE   64 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~---------~--~~-----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~   64 (90)
                      +.=+...|++++|.+..+.+++..-+.         .  +.           ......+..+..+|.++.+.+.|.+|.+
T Consensus       270 a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~  349 (400)
T COG3071         270 AERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASE  349 (400)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHH
Confidence            344677899999999988888765442         0  00           0011114456889999999999999999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          65 FHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        65 ~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      +++.|++..|+ ...+..+|.++.
T Consensus       350 ~leaAl~~~~s-~~~~~~la~~~~  372 (400)
T COG3071         350 ALEAALKLRPS-ASDYAELADALD  372 (400)
T ss_pred             HHHHHHhcCCC-hhhHHHHHHHHH
Confidence            99999999874 455666776654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.19  E-value=0.00044  Score=42.37  Aligned_cols=67  Identities=12%  Similarity=-0.019  Sum_probs=57.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   78 (90)
                      ++-+|.-+...|+|+.|.+.|...+++.|..         .-++.|.|..++--|+++-|.+.+.+--+-+|++|-
T Consensus       102 fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         102 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             HHHHHHHHHhcccchHHHHHhhhHhccCCcc---------hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            5678999999999999999999999998876         334577888888999999999999998888887763

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.17  E-value=0.0038  Score=43.61  Aligned_cols=44  Identities=14%  Similarity=0.074  Sum_probs=34.9

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      ++..+-..+...|+++.|...+++.+.+.|++...|..+..+|+
T Consensus       496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence            45777788888888888888888888888887777777776665

>KOG3364|consensus

Probab=97.15  E-value=0.0023  Score=36.33  Aligned_cols=58  Identities=16%  Similarity=0.202  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498          16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus        16 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      ..+.+.+++..++ . ..     .+....+.+.|+..+++.++|+.++++....++..|++..+.
T Consensus        51 v~~GI~iLe~l~~-~-~~-----~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   51 VQEGIVILEDLLK-S-AH-----PERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHhHHHHHHHhh-h-cC-----cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            3446666666665 1 11     122245668899999999999999999999999999887664

>KOG1174|consensus

Probab=97.15  E-value=0.0039  Score=41.52  Aligned_cols=69  Identities=14%  Similarity=-0.036  Sum_probs=46.3

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      -|..+..++++++|+-.|+.|+.+.|-.         ..+|.-+-++|.-.|++.+|.-....++..-|.++.++.-+
T Consensus       340 KG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  340 KGRLLIALERHTQAVIAFRTAQMLAPYR---------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             ccHHHHhccchHHHHHHHHHHHhcchhh---------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            3677788888888888888888887655         33445566666666666666666666666555555554444

>KOG0495|consensus

Probab=97.12  E-value=0.0036  Score=43.76  Aligned_cols=59  Identities=20%  Similarity=0.155  Sum_probs=30.6

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498          13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus        13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      +++.++|+++++++++.+|..         .+.+..+|.++..+++.+.|.+.|.+.++..|..+..+
T Consensus       664 ld~~eeA~rllEe~lk~fp~f---------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW  722 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDF---------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW  722 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCch---------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence            445555555555555555544         22225555555555555555555555555555444333

>KOG4340|consensus

Probab=97.09  E-value=0.0014  Score=42.02  Aligned_cols=60  Identities=22%  Similarity=0.129  Sum_probs=50.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ++|.|-+..+.|+|++|++-|+.|++...-.         +..-++++.++++.|+++.|+++..+.+.
T Consensus       147 ~in~gCllykegqyEaAvqkFqaAlqvsGyq---------pllAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---------PLLAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             hccchheeeccccHHHHHHHHHHHHhhcCCC---------chhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5678888999999999999999999974332         33458899999999999999999877664

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.07  E-value=0.0016  Score=28.85  Aligned_cols=29  Identities=24%  Similarity=0.422  Sum_probs=26.6

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ++..||.+-...++|++|+..|++|+.+.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            56889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG4340|consensus

Probab=97.06  E-value=0.0047  Score=39.71  Aligned_cols=59  Identities=19%  Similarity=0.133  Sum_probs=46.4

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   78 (90)
                      .+..+|+.|+++...-.+..|++         ...+.-+|.||+...+|..|.+||+|.-++.|+...
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~---------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q   79 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRS---------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ   79 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence            66677888888877766666544         233477999999999999999999999998885443

>KOG0545|consensus

Probab=97.04  E-value=0.0042  Score=38.81  Aligned_cols=67  Identities=18%  Similarity=-0.032  Sum_probs=60.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   78 (90)
                      +.|...++...|+|-+++++....++..|.+         .++++.-|.++...=+.++|...++++++++|.-..
T Consensus       233 llNy~QC~L~~~e~yevleh~seiL~~~~~n---------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGN---------VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHhHHHHHhhHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            5688999999999999999999999998887         777899999999999999999999999999985443

>KOG4814|consensus

Probab=97.03  E-value=0.0057  Score=42.66  Aligned_cols=72  Identities=18%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      |-+.-+.++.+|..++++|...++-.+.+..+   ..-++...+++.||.++.+.|.|++++++|=+.+|.++-.
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~  430 (872)
T KOG4814|consen  359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC  430 (872)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence            45667889999999999999999988876433   2226677999999999999999999999999999877654

>KOG1586|consensus

Probab=97.03  E-value=0.0056  Score=37.96  Aligned_cols=60  Identities=17%  Similarity=0.146  Sum_probs=46.8

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-cCHHHHHHHHHHHHhhC
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-KKYEEALEFHKQALVVA   73 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~   73 (90)
                      .+.+++++|..+++++++++.+.+.=   ..-+.-+..+|..|..- .++++|+.+|+++-+..
T Consensus        84 ykk~~~~eAv~cL~~aieIyt~~Grf---~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y  144 (288)
T KOG1586|consen   84 YKKVDPEEAVNCLEKAIEIYTDMGRF---TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY  144 (288)
T ss_pred             hhccChHHHHHHHHHHHHHHHhhhHH---HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            34569999999999999999887432   22244567889998774 99999999999998764

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.01  E-value=0.0054  Score=32.35  Aligned_cols=35  Identities=20%  Similarity=0.155  Sum_probs=31.4

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE   36 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   36 (90)
                      ++.++|.++...|++++|+..+++++++..+.++.
T Consensus        43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~   77 (94)
T PF12862_consen   43 ALLNLAELHRRFGHYEEALQALEEAIRLARENGDR   77 (94)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence            35688999999999999999999999999998654

>KOG0495|consensus

Probab=96.96  E-value=0.0053  Score=43.00  Aligned_cols=69  Identities=20%  Similarity=0.121  Sum_probs=54.6

Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      -....+++.|..+|.+|....+.          +.+++.-+.+.+-++..++|++..+++++..|.....+..+|+++-
T Consensus       628 e~en~e~eraR~llakar~~sgT----------eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e  696 (913)
T KOG0495|consen  628 EFENDELERARDLLAKARSISGT----------ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE  696 (913)
T ss_pred             hhccccHHHHHHHHHHHhccCCc----------chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH
Confidence            44566777777777777664332          3345778899999999999999999999999999999999998763

>KOG0376|consensus

Probab=96.94  E-value=0.00039  Score=46.29  Aligned_cols=80  Identities=15%  Similarity=0.067  Sum_probs=44.1

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC----C---------------------cchhhHHHHHHhHHHHHHHhcCH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGG----E---------------------IIADKWEPLLNNLGHVNRKLKKY   59 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~---------------------~~~~~~~~~~~~lg~~~~~~g~~   59 (90)
                      +-+.....-++|+.|+..|.+|+++.|....    +                     .......++|..-|.+.-.++++
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            3445556667777777777777777664300    0                     00111133445555666666666


Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498          60 EEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus        60 ~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      .+|+..|+....+.|+++.+...+-
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHH
Confidence            6666666666666665555544443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.93  E-value=0.0061  Score=31.36  Aligned_cols=61  Identities=26%  Similarity=0.242  Sum_probs=48.8

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      |+=+....+..+|+..++++++..++..     .. -.++..+..+|...|+|++++++.-+=+.+.
T Consensus        13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~-----~r-f~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A   73 (80)
T PF10579_consen   13 GLKLYHQNETQQALQKWRKALEKITDRE-----DR-FRVLGYLIQAHMEWGKYREMLAFALQQLEIA   73 (80)
T ss_pred             HHHHhccchHHHHHHHHHHHHhhcCChH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456688999999999999999887752     22 3456778999999999999999988866553

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.93  E-value=0.018  Score=42.38  Aligned_cols=25  Identities=12%  Similarity=-0.016  Sum_probs=11.9

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      +.+-..|.+.|++++|.+.|++..+
T Consensus       583 naLI~ay~k~G~ldeA~elf~~M~e  607 (1060)
T PLN03218        583 GALMKACANAGQVDRAKEVYQMIHE  607 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4444444444454444444444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.93  E-value=0.016  Score=39.33  Aligned_cols=72  Identities=17%  Similarity=0.101  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHhhCCC-----c-----------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC--Ch
Q psy8498          16 YTVAENCFMEALSKVKQLGGE-----I-----------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--KA   77 (90)
Q Consensus        16 ~~~A~~~~~~al~~~~~~~~~-----~-----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~   77 (90)
                      ..+|+++|+++++..+..-..     +           .......+..++|.|.+++|+.++|++.++..++..|.  +-
T Consensus       216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l  295 (539)
T PF04184_consen  216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNL  295 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchh
Confidence            578899999999877765111     0           00111234578999999999999999999999988773  34


Q ss_pred             HHHHHHHHHH
Q psy8498          78 STFCCIVVKE   87 (90)
Q Consensus        78 ~~~~~l~~~~   87 (90)
                      ..+.++-.++
T Consensus       296 ~IrenLie~L  305 (539)
T PF04184_consen  296 NIRENLIEAL  305 (539)
T ss_pred             hHHHHHHHHH
Confidence            4555554443

The molecular function of this protein is uncertain.

>KOG4507|consensus

Probab=96.90  E-value=0.0076  Score=41.84  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=32.3

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .+..+|..+.-+.+.+.|++.+++|+..+|+++..-..+
T Consensus       678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL  716 (886)
T ss_pred             HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence            456779999999999999999999999999877664433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.87  E-value=0.0021  Score=30.56  Aligned_cols=30  Identities=13%  Similarity=-0.053  Sum_probs=26.0

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ..++..+.+.|+|++|.++.+.++++.|++
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence            467899999999999999999999999877

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=96.87  E-value=0.0018  Score=26.03  Aligned_cols=24  Identities=13%  Similarity=-0.022  Sum_probs=21.0

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQ   68 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~   68 (90)
                      ....+|.++..+|++++|...+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            457899999999999999998764

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.84  E-value=0.036  Score=32.29  Aligned_cols=77  Identities=13%  Similarity=-0.083  Sum_probs=55.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+..+-...++.++++..+....-+.|..         +..-.--|.++...|+|.+|++.++....-.|..+.+.--
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~---------~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL   83 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEF---------PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL   83 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence            3455566667778888888888777777665         3333667888888999999999999877777766665555


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++.|+.
T Consensus        84 lA~CL~   89 (160)
T PF09613_consen   84 LALCLY   89 (160)
T ss_pred             HHHHHH
Confidence            666553

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.82  E-value=0.024  Score=35.05  Aligned_cols=63  Identities=16%  Similarity=0.006  Sum_probs=48.9

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA   69 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   69 (90)
                      ..+|..|...|+|++|.++|+.+.....+.++..   ....++..+..|.++.|+.+..+.+.-+.
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~---l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWS---LLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3678889999999999999999988777766542   22445688899999999988887765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PLN03077 Protein ECB2; Provisional

Probab=96.82  E-value=0.019  Score=41.10  Aligned_cols=42  Identities=10%  Similarity=0.011  Sum_probs=23.7

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      ..+-..++..|+.+.+....++.+++.|+++..+..++.+|+
T Consensus       661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya  702 (857)
T PLN03077        661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA  702 (857)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence            333334444555555555555556666766666666666654

>KOG4642|consensus

Probab=96.78  E-value=0.0086  Score=37.21  Aligned_cols=61  Identities=23%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      +.|-+.+|.+..+++....-.++|+++.|..         ...++.+|.++.....|++|+...++|..+
T Consensus        47 ~tnralchlk~~~~~~v~~dcrralql~~N~---------vk~h~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   47 YTNRALCHLKLKHWEPVEEDCRRALQLDPNL---------VKAHYFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             hhhHHHHHHHhhhhhhhhhhHHHHHhcChHH---------HHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            3567889999999999999999999999988         677799999999999999999999999654

>KOG2053|consensus

Probab=96.77  E-value=0.0084  Score=42.92  Aligned_cols=60  Identities=22%  Similarity=0.059  Sum_probs=46.7

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      |.++.++|+.++|..+++..-...+.+         ..++..+-.||+++|++++|..+|+++++.+|+
T Consensus        50 aLsl~r~gk~~ea~~~Le~~~~~~~~D---------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   50 ALSLFRLGKGDEALKLLEALYGLKGTD---------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHhcCchhHHHHHhhhccCCCCc---------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            677888899998885555433332221         345688999999999999999999999999996

>KOG1308|consensus

Probab=96.77  E-value=0.00014  Score=46.78  Aligned_cols=73  Identities=21%  Similarity=0.115  Sum_probs=50.0

Q ss_pred             HHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498           8 LSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus         8 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      .-....|+++.|++.|-+++++-|..         +.++-.-+.++.++++...|++.+..++.++|+.+..|--.|.++
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~---------a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~  192 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPL---------AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE  192 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCch---------hhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH
Confidence            34556788888888888888886665         444566777777777777777777777777776555554444444


Q ss_pred             hc
Q psy8498          88 GV   89 (90)
Q Consensus        88 ~~   89 (90)
                      .+
T Consensus       193 rl  194 (377)
T KOG1308|consen  193 RL  194 (377)
T ss_pred             HH
Confidence            43

>KOG1586|consensus

Probab=96.74  E-value=0.032  Score=34.74  Aligned_cols=68  Identities=15%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      ..-|..|-...+++.|-..|.++.+..-+.++.  ++ ...++...+.||++. +.++|.++.++++++..+
T Consensus        38 ~~Aan~yklaK~w~~AG~aflkaA~~h~k~~sk--hD-aat~YveA~~cykk~-~~~eAv~cL~~aieIyt~  105 (288)
T KOG1586|consen   38 ERAANMYKLAKNWSAAGDAFLKAADLHLKAGSK--HD-AATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTD  105 (288)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc--hh-HHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHh
Confidence            344666677777777777777777777666543  22 255667778887776 999999999999988653

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=96.72  E-value=0.014  Score=36.03  Aligned_cols=59  Identities=15%  Similarity=0.064  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498          19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK   86 (90)
Q Consensus        19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~   86 (90)
                      |+++|.+|+.+.|..     +..    ++.+|.+....|+.=.|+=+|-+++......+.+..++...
T Consensus         1 A~~~Y~~A~~l~P~~-----G~p----~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l   59 (278)
T PF10373_consen    1 AERYYRKAIRLLPSN-----GNP----YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKL   59 (278)
T ss_dssp             HHHHHHHHHHH-TTB-----SHH----HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCC-----CCc----ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            789999999999988     334    49999999999999999999999997654456666666544

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2796|consensus

Probab=96.71  E-value=0.017  Score=36.61  Aligned_cols=80  Identities=18%  Similarity=0.125  Sum_probs=48.7

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..+|.+..+-||-+.|..+|++.=+......+.   +....++.+.+.+|...+++..|...|.+.+..+|.++.+..+.
T Consensus       216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~---q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnK  292 (366)
T KOG2796|consen  216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL---QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNK  292 (366)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc---chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchH
Confidence            356777888888888888888655443333211   11122345666666666667677776766666666666655555


Q ss_pred             HHH
Q psy8498          84 VVK   86 (90)
Q Consensus        84 ~~~   86 (90)
                      |.|
T Consensus       293 ALc  295 (366)
T KOG2796|consen  293 ALC  295 (366)
T ss_pred             HHH
Confidence            544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.70  E-value=0.025  Score=34.20  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=49.2

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-CCCChHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-APMKASTFCCIV   84 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~   84 (90)
                      ++....++-|++...+-..+.+++.|...+          ...+|+...++|++.+|...|++++.- ...++..+..++
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvqn----------r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA  131 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPTVQN----------RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLA  131 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchhHHH----------HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHH
Confidence            455667777887777777777777765521          277999999999999999999999852 223444444444


Q ss_pred             H
Q psy8498          85 V   85 (90)
Q Consensus        85 ~   85 (90)
                      .
T Consensus       132 ~  132 (251)
T COG4700         132 Q  132 (251)
T ss_pred             H
Confidence            3

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.69  E-value=0.017  Score=40.45  Aligned_cols=23  Identities=9%  Similarity=-0.146  Sum_probs=11.4

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEA   26 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~a   26 (90)
                      +.+...|.+.|++++|+..|++.
T Consensus       294 n~li~~y~~~g~~~eA~~lf~~M  316 (697)
T PLN03081        294 NSMLAGYALHGYSEEALCLYYEM  316 (697)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHH
Confidence            34444455555555555555444

>KOG0376|consensus

Probab=96.64  E-value=0.0039  Score=41.75  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=11.1

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          50 GHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        50 g~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +..+.+.+++..|+..+.++++++|.
T Consensus        45 a~a~lK~e~~~~Al~Da~kaie~dP~   70 (476)
T KOG0376|consen   45 ALAHLKVESFGGALHDALKAIELDPT   70 (476)
T ss_pred             hhhheeechhhhHHHHHHhhhhcCch
Confidence            33444444444444444444444443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.60  E-value=0.039  Score=31.31  Aligned_cols=73  Identities=26%  Similarity=0.275  Sum_probs=42.4

Q ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Q psy8498           9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-KASTFCCIVVKE   87 (90)
Q Consensus         9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~   87 (90)
                      ++...|+++.|...|++++...+..      ..........+..+...+++++++..+.+++...+. ....+..++.++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPEL------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY  212 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCc------cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence            6777788888888888875533210      001222344455566667777777777777766665 344455554443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.57  E-value=0.053  Score=30.76  Aligned_cols=71  Identities=30%  Similarity=0.268  Sum_probs=52.8

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      +..+...++++.++..+.++++..+..        ....+..++.++...+++++|...+.+++...|.........+.
T Consensus       174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  244 (291)
T COG0457         174 GALLEALGRYEEALELLEKALKLNPDD--------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL  244 (291)
T ss_pred             hhHHHHhcCHHHHHHHHHHHHhhCccc--------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence            334567788999999999999887762        03345888999999999999999999999888764444444433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.52  E-value=0.027  Score=35.34  Aligned_cols=61  Identities=25%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhh
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVV   72 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~   72 (90)
                      .++||++.|+.++.|+=...+.. .+........++++.|......+ ++++|..+.++|..+
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~-~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSL-DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcC-CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            46899999999999998877522 23234555677899999999999 999999999999987

It is also involved in sporulation [].

>KOG1585|consensus

Probab=96.52  E-value=0.014  Score=36.45  Aligned_cols=67  Identities=12%  Similarity=0.227  Sum_probs=50.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      +...++.|....+|++|..++.+|.+-.+.+...+..   ++.+...+.+..++..+.++.++|++|..+
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA---AKayEqaamLake~~klsEvvdl~eKAs~l  100 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA---AKAYEQAAMLAKELSKLSEVVDLYEKASEL  100 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4456788889999999999999999888877443221   334566777778888888888888887755

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.49  E-value=0.044  Score=40.48  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=10.6

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHH
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQA   69 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~a   69 (90)
                      +.+...|.+.|++++|.+.|++.
T Consensus       688 nsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        688 SSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHH
Confidence            44444444444444444444443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.48  E-value=0.025  Score=37.94  Aligned_cols=81  Identities=16%  Similarity=0.094  Sum_probs=60.3

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCC---C--cchhh----HHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGG---E--IIADK----WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~--~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      |..+.++++|..|..-|+.|+++-.+...   +  ...+.    ..-+-..+..||.++++.+.|+...-+++.++|..+
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            55678899999999999999998776521   1  11111    112346789999999999999999999999999877


Q ss_pred             HHHHHHHHHH
Q psy8498          78 STFCCIVVKE   87 (90)
Q Consensus        78 ~~~~~l~~~~   87 (90)
                      ..+..-|.|.
T Consensus       263 rnHLrqAavf  272 (569)
T PF15015_consen  263 RNHLRQAAVF  272 (569)
T ss_pred             hHHHHHHHHH
Confidence            6665555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.48  E-value=0.087  Score=33.50  Aligned_cols=81  Identities=12%  Similarity=-0.038  Sum_probs=60.2

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhC-------------------------CCcchhhHHHHHHhHHHHHHHh-----
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLG-------------------------GEIIADKWEPLLNNLGHVNRKL-----   56 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------~~~~~~~~~~~~~~lg~~~~~~-----   56 (90)
                      +......|+..+|+..++..++......                         ........+.++..+|......     
T Consensus       191 akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~  270 (352)
T PF02259_consen  191 AKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLS  270 (352)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccc
Confidence            5667788899999999888887222211                         1111233456677788888888     


Q ss_pred             -cCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498          57 -KKYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        57 -g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                       +..+++...|+++++++|....++...|..+
T Consensus       271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  271 SESSDEILKYYKEATKLDPSWEKAWHSWALFN  302 (352)
T ss_pred             cccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence             9999999999999999998888888877665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.46  E-value=0.017  Score=25.18  Aligned_cols=30  Identities=20%  Similarity=0.181  Sum_probs=24.0

Q ss_pred             HhHHHHHHHhcCHHHHHHH--HHHHHhhCCCC
Q psy8498          47 NNLGHVNRKLKKYEEALEF--HKQALVVAPMK   76 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~--~~~al~~~~~~   76 (90)
                      ..+|..+..+|++++|++.  |+-+..++|.|
T Consensus         5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            7789999999999999999  55777777653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.34  E-value=0.073  Score=31.39  Aligned_cols=66  Identities=11%  Similarity=-0.006  Sum_probs=46.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      .+.++|.-|.+.||+++|.++|.++.+.-...      .....++.++-.+....|++.....+..++-.+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSP------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            35678888889999999999998877642221      2223345667777777888888888888876553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3081|consensus

Probab=96.27  E-value=0.031  Score=35.29  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=17.2

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +-++.|+..+|+|++|....+.+|.-+++++.++.|
T Consensus       211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N  246 (299)
T KOG3081|consen  211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN  246 (299)
T ss_pred             ccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence            444444444444444444444444444444444444

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.046  Score=34.40  Aligned_cols=71  Identities=15%  Similarity=0.071  Sum_probs=60.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|+-.++...++++.|..+-++.+.+.|..     ...+    .--|.+|..+|-+..|++.++..++..|+.+.+-+.
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~d-----p~ei----rDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i  254 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPED-----PYEI----RDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI  254 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCC-----hhhc----cCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence            4577788999999999999999999998877     3333    668999999999999999999999999987766543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=96.24  E-value=0.025  Score=34.13  Aligned_cols=52  Identities=19%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh-CCCcchhhHHHHHHhHHHHHHHhcCHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL-GGEIIADKWEPLLNNLGHVNRKLKKYEEA   62 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A   62 (90)
                      ..+|..|. ..|.++++.++.+++++.+.. ..+      +.++..|+.++.++|++++|
T Consensus       145 ~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n------~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  145 YALATYYT-KRDPEKTIQLLLRALELSNPDDNFN------PEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCC------HHHHHHHHHHHHHhcchhhh
Confidence            34566665 889999999999999998776 222      55579999999999999887

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=96.22  E-value=0.0071  Score=24.25  Aligned_cols=23  Identities=9%  Similarity=-0.233  Sum_probs=20.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFME   25 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~   25 (90)
                      ..++|.++...|++++|+..+++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhC
Confidence            46889999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.16  E-value=0.044  Score=34.47  Aligned_cols=61  Identities=20%  Similarity=0.142  Sum_probs=42.0

Q ss_pred             HHHH-HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           6 VELS-SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         6 l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      .|.+ +...++.+.|...|+.+++.++..     ...|    ......+.+.|+.+.|...|++++..-|.
T Consensus        41 ~A~~E~~~~~d~~~A~~Ife~glk~f~~~-----~~~~----~~Y~~~l~~~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   41 YALMEYYCNKDPKRARKIFERGLKKFPSD-----PDFW----LEYLDFLIKLNDINNARALFERAISSLPK  102 (280)
T ss_dssp             HHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHH----HHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCCCC-----HHHH----HHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence            3444 333566666999999999888776     3444    55667777888899999999998876553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1585|consensus

Probab=96.08  E-value=0.13  Score=32.34  Aligned_cols=68  Identities=13%  Similarity=0.112  Sum_probs=49.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      +...+....+...+.++..+|++|...+-+.+.+..  . +.++.. +-=..+.-++++|+..|++++.+-.
T Consensus        74 yEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt--A-AmaleK-Aak~lenv~Pd~AlqlYqralavve  141 (308)
T KOG1585|consen   74 YEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT--A-AMALEK-AAKALENVKPDDALQLYQRALAVVE  141 (308)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch--H-HHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHh
Confidence            345677888889999999999999999998866522  1 222222 3334456789999999999987644

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.03  E-value=0.075  Score=32.34  Aligned_cols=61  Identities=20%  Similarity=0.103  Sum_probs=45.7

Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      +.....+++|++.|.-|+-.....+.+  ....+.++..+|++|+.+|+.++...++++|+..
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~--~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~  147 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEK--PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF  147 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            345678899999999999887766544  2344667799999999999977666666666643

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.00  E-value=0.036  Score=24.51  Aligned_cols=31  Identities=19%  Similarity=0.115  Sum_probs=28.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      +..+|-+-...++|++|++-|++++++....
T Consensus         4 ~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l   34 (38)
T PF10516_consen    4 YDLLGEISLENENFEQAIEDYEKALEIQEEL   34 (38)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            5678999999999999999999999998765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3081|consensus

Probab=95.97  E-value=0.056  Score=34.17  Aligned_cols=68  Identities=15%  Similarity=0.050  Sum_probs=34.6

Q ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ++.++.+.+-|+...++..++.++-           ++..||..+.+    .+++..|.-.|++--+..|..+......+
T Consensus       146 I~lk~~r~d~A~~~lk~mq~ided~-----------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~A  214 (299)
T KOG3081|consen  146 ILLKMHRFDLAEKELKKMQQIDEDA-----------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQA  214 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHH-----------HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHH
Confidence            4555666666666666666654432           22333333333    23456666666665543344455555555


Q ss_pred             HHH
Q psy8498          85 VKE   87 (90)
Q Consensus        85 ~~~   87 (90)
                      +|+
T Consensus       215 v~~  217 (299)
T KOG3081|consen  215 VCH  217 (299)
T ss_pred             HHH
Confidence            444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.93  E-value=0.067  Score=32.28  Aligned_cols=29  Identities=17%  Similarity=0.016  Sum_probs=24.1

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      .-.|.++...|+.++|+.-|+++++..++
T Consensus       163 elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         163 ELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence            44588999999999999999999988643

>KOG2796|consensus

Probab=95.92  E-value=0.028  Score=35.65  Aligned_cols=63  Identities=19%  Similarity=0.075  Sum_probs=55.2

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      .|.+.+|...++|.+|...|.+.++..+.+         +..-++-|.|..-.|+...|++..+++++..|.
T Consensus       256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~---------~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRN---------AVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hhhhhheecccchHHHHHHHhhccccCCCc---------hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            467888999999999999999998887766         344599999999999999999999999999984

>PLN03077 Protein ECB2; Provisional

Probab=95.83  E-value=0.074  Score=38.18  Aligned_cols=26  Identities=8%  Similarity=-0.102  Sum_probs=15.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALS   28 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~   28 (90)
                      ++.+...|...|+.++|++.|++..+
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~  582 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVE  582 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455556666666666666666554

>PRK10941 hypothetical protein; Provisional

Probab=95.82  E-value=0.078  Score=33.42  Aligned_cols=51  Identities=20%  Similarity=0.078  Sum_probs=44.4

Q ss_pred             hhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Q psy8498          40 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL   90 (90)
Q Consensus        40 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~   90 (90)
                      +.....+.++-.+|.+.++++.|+++.++.+.+.|+++.-+.-.|.++..|
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL  228 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL  228 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            344556799999999999999999999999999999998888888888654

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=95.50  E-value=0.026  Score=37.45  Aligned_cols=69  Identities=14%  Similarity=0.016  Sum_probs=48.2

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ++..+..++.-.|||..|++..+.. ++.+..--........++++.+|.+|.-+++|.+|++.|.+.+.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788899999999888776542 21111100011233355678899999999999999999999884

>KOG4507|consensus

Probab=95.50  E-value=0.022  Score=39.69  Aligned_cols=80  Identities=21%  Similarity=0.103  Sum_probs=65.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      ++..|..+..+|+...|+.|++.|+...|.-..        ..+.+++.+..+-|-.-.|-....|++.+.-+.+-.+..
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~--------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~  681 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD--------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS  681 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccChhhhc--------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence            444577778899999999999999998886521        123789999999999999999999999998877888877


Q ss_pred             HHHHHhcC
Q psy8498          83 IVVKEGVL   90 (90)
Q Consensus        83 l~~~~~~~   90 (90)
                      +|..+.+|
T Consensus       682 ~g~~~l~l  689 (886)
T KOG4507|consen  682 LGNAYLAL  689 (886)
T ss_pred             cchhHHHH
Confidence            77776543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.50  E-value=0.097  Score=35.73  Aligned_cols=58  Identities=16%  Similarity=0.154  Sum_probs=47.4

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA   69 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   69 (90)
                      ++|++..+.|+.++|++.|+..++..|..+.       -.++.++-.++..+++|.++.....+-
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            6899999999999999999999998774311       335688999999999998888777664

The molecular function of this protein is uncertain.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.44  E-value=0.22  Score=28.01  Aligned_cols=63  Identities=17%  Similarity=0.099  Sum_probs=47.1

Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhhCCCcc---hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          10 SDKSFSYTVAENCFMEALSKVKQLGGEII---ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ....|-|++|...+++|.++....+....   ...-+.++-.|+..+.++|+|++++.-..++|..
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            45678899999999999999887754421   1112457888999999999999999999999854

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.43  E-value=0.35  Score=30.39  Aligned_cols=78  Identities=14%  Similarity=-0.002  Sum_probs=53.1

Q ss_pred             hhhHHHHHHhhC-CHHHHHHHHHHHHHHHHhh----CC-CcchhhHHHHHHhHHHHHHHhcCHHHHHH---HHHHHHhhC
Q psy8498           3 LDNVELSSDKSF-SYTVAENCFMEALSKVKQL----GG-EIIADKWEPLLNNLGHVNRKLKKYEEALE---FHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~----~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~---~~~~al~~~   73 (90)
                      +.|+|......+ +++.|..++++++++.+..    .. ....+...+++..++.++...+.++...+   ..+.+-...
T Consensus        38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~  117 (278)
T PF08631_consen   38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY  117 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence            468899999999 9999999999999997551    11 12234556788999999999888653333   333333334


Q ss_pred             CCChHHH
Q psy8498          74 PMKASTF   80 (90)
Q Consensus        74 ~~~~~~~   80 (90)
                      |+.+..+
T Consensus       118 ~~~~~~~  124 (278)
T PF08631_consen  118 GNKPEVF  124 (278)
T ss_pred             CCCcHHH
Confidence            5545444

It is also involved in sporulation [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.43  E-value=0.25  Score=28.61  Aligned_cols=74  Identities=15%  Similarity=-0.033  Sum_probs=48.9

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      .+..+-...+++++++..+....-+.|+..         ..-.--|.++...|+|++|++.+++...-.+..+-..--++
T Consensus        15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~---------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A   85 (153)
T TIGR02561        15 EVLMYALRSADPYDAQAMLDALRVLRPNLK---------ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA   85 (153)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCcc---------ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence            334444557888888888777777777662         22244678888889999999988887665555454444445


Q ss_pred             HHH
Q psy8498          85 VKE   87 (90)
Q Consensus        85 ~~~   87 (90)
                      +|.
T Consensus        86 ~CL   88 (153)
T TIGR02561        86 LCL   88 (153)
T ss_pred             HHH
Confidence            544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=95.40  E-value=0.043  Score=25.06  Aligned_cols=25  Identities=8%  Similarity=-0.080  Sum_probs=23.1

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALS   28 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~   28 (90)
                      .+++.+|..+|+++.|.+.+++.++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4789999999999999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=95.39  E-value=0.23  Score=30.69  Aligned_cols=55  Identities=25%  Similarity=0.107  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVV   72 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~   72 (90)
                      +.|...|++|+++....-++ ..+.......|.+.++++ +|+.++|.+..++|+..
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~-~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPP-THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcccCC-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            67999999999999985332 234444455677777766 99999999999998853

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.30  E-value=0.32  Score=32.19  Aligned_cols=81  Identities=11%  Similarity=-0.062  Sum_probs=56.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH---hcCHHHHHHHHHHHHh-hCCCChH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK---LKKYEEALEFHKQALV-VAPMKAS   78 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~-~~~~~~~   78 (90)
                      ..++=.+|....+|+.-+++.+..-.+ |..+..    ....+...+|.++-+   .|+.++|++...+++. ..+.++.
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~----~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVA----NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccchh----cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            356667788888888777776655443 221110    013344778899988   9999999999999654 4457788


Q ss_pred             HHHHHHHHHh
Q psy8498          79 TFCCIVVKEG   88 (90)
Q Consensus        79 ~~~~l~~~~~   88 (90)
                      +++-.|.+|-
T Consensus       219 ~~gL~GRIyK  228 (374)
T PF13281_consen  219 TLGLLGRIYK  228 (374)
T ss_pred             HHHHHHHHHH
Confidence            8988888763

>KOG0551|consensus

Probab=95.23  E-value=0.067  Score=34.85  Aligned_cols=63  Identities=16%  Similarity=0.065  Sum_probs=55.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      +.|-+.+....|+|..|+.-..+++.+.|..         .+++.+=+.|+..+.++.+|..+.+..++++.
T Consensus       122 Y~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h---------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  122 YTNRAAAQLYLGNYRSALNDCSAALKLKPTH---------LKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhcCcch---------hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            4677788888999999999999999998877         66678899999999999999999999988764

>PF12854 PPR_1: PPR repeat

Probab=95.22  E-value=0.075  Score=22.60  Aligned_cols=26  Identities=23%  Similarity=0.171  Sum_probs=22.8

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQ   68 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~   68 (90)
                      ..+++.+=..+++.|+.++|.+.+++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            34678999999999999999999875

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.99  E-value=0.17  Score=32.18  Aligned_cols=60  Identities=10%  Similarity=-0.104  Sum_probs=51.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      +..++..+...|+++.+++.+++.+...|-.         ...+..+=..|.+.|+...|++.|++.-.
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~---------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELDPYD---------EPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCccc---------hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            4456777888899999999999999998877         44558888999999999999999999765

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.92  E-value=0.41  Score=28.27  Aligned_cols=52  Identities=21%  Similarity=0.144  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498          20 ENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus        20 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      .+-++.-++-...+..+   +.....+..+|..|.+.|++++|++.|.++.....
T Consensus        16 ~~~Le~elk~~~~n~~k---esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~   67 (177)
T PF10602_consen   16 LEKLEAELKDAKSNLGK---ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT   67 (177)
T ss_pred             HHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC
Confidence            33445555554444333   33345679999999999999999999999887653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.83  E-value=0.68  Score=30.42  Aligned_cols=77  Identities=14%  Similarity=0.029  Sum_probs=57.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh------------CC-C-------cchhhHHHHHHhHHHHHHHhcCHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL------------GG-E-------IIADKWEPLLNNLGHVNRKLKKYEE   61 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~-~-------~~~~~~~~~~~~lg~~~~~~g~~~~   61 (90)
                      ++..++.++..+|+++.|.++.++|+=..+..            .. .       ......-.+++.....+.+.|-+..
T Consensus        42 tLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rT  121 (360)
T PF04910_consen   42 TLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRT  121 (360)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHH
Confidence            46678999999999999999999998666532            00 0       0011112345777888999999999


Q ss_pred             HHHHHHHHHhhCCC-ChH
Q psy8498          62 ALEFHKQALVVAPM-KAS   78 (90)
Q Consensus        62 A~~~~~~al~~~~~-~~~   78 (90)
                      |+++.+-.+.++|. +|.
T Consensus       122 AlE~~KlLlsLdp~~DP~  139 (360)
T PF04910_consen  122 ALEWCKLLLSLDPDEDPL  139 (360)
T ss_pred             HHHHHHHHHhcCCCCCcc
Confidence            99999999999997 553

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3783|consensus

Probab=94.73  E-value=0.47  Score=32.72  Aligned_cols=67  Identities=18%  Similarity=0.041  Sum_probs=54.0

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCC
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAP   74 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~   74 (90)
                      +|.++...|+...|..+|+..++-.-....+  .-..+-+++.+|.++..+|. ..++..+..+|.....
T Consensus       455 ~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d--~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~  522 (546)
T KOG3783|consen  455 KGVILRNLGDSEVAPKCFKIQVEKESKRTED--LWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS  522 (546)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence            5899999999999999999999764433332  12235578999999999999 9999999999987763

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.63  E-value=0.4  Score=29.67  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          18 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        18 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ..+.++.+|++.+...+..   .....+...+|.-|.+.|++++|+++++.+...
T Consensus       156 ~iI~lL~~A~~~f~~~~~~---R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~  207 (247)
T PF11817_consen  156 LIIELLEKAYEQFKKYGQN---RMASYLSLEMAEEYFRLGDYDKALKLLEPAASS  207 (247)
T ss_pred             HHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4678889999988877553   222345688999999999999999999998654

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1550|consensus

Probab=94.63  E-value=0.37  Score=33.31  Aligned_cols=73  Identities=12%  Similarity=0.025  Sum_probs=51.6

Q ss_pred             hhhHHHHHHhhC-----CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc---CHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSF-----SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~   74 (90)
                      ...+|.+|....     +++.|..+|.++.+...           +...+.+|.++....   +...|..+|..|...  
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-----------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--  357 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-----------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--  357 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-----------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--
Confidence            456788888743     67778888888877532           223477888877755   567889999888765  


Q ss_pred             CChHHHHHHHHHHh
Q psy8498          75 MKASTFCCIVVKEG   88 (90)
Q Consensus        75 ~~~~~~~~l~~~~~   88 (90)
                      .+..+...++.|+.
T Consensus       358 G~~~A~~~la~~y~  371 (552)
T KOG1550|consen  358 GHILAIYRLALCYE  371 (552)
T ss_pred             CChHHHHHHHHHHH
Confidence            35677777777764

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.62  E-value=0.22  Score=33.77  Aligned_cols=67  Identities=18%  Similarity=0.127  Sum_probs=49.6

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHh
Q psy8498          13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM----KASTFCCIVVKEG   88 (90)
Q Consensus        13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~   88 (90)
                      ..+.+.|++.++...+.+|+.         .--+...|..++..|+.++|++.|++++....+    ..-.++.+|.++.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s---------~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~  316 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNS---------ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM  316 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence            456778889999999888876         333588899999999999999999998853321    1223556666654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.59  E-value=0.11  Score=23.71  Aligned_cols=26  Identities=15%  Similarity=0.165  Sum_probs=23.7

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      .++|..|.++|+.+.|.+..++.+.-
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            57999999999999999999999853

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=94.57  E-value=0.11  Score=26.51  Aligned_cols=29  Identities=17%  Similarity=0.157  Sum_probs=24.8

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQ   32 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~   32 (90)
                      ...++-+...|+|++|+.+|+++++..-.
T Consensus        10 a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681          10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999999998866

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.56  E-value=0.34  Score=29.34  Aligned_cols=59  Identities=19%  Similarity=0.112  Sum_probs=46.1

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA   69 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   69 (90)
                      .++..+.+.+++++|+..++.++..-.+.      ...+.+-.+++.+...+|++++|+......
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De------~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDE------NLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhH------HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            45777889999999999999998654332      222335588999999999999999977663

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.46  E-value=0.23  Score=36.02  Aligned_cols=64  Identities=19%  Similarity=0.027  Sum_probs=53.9

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      |.+....|++++|+++.+.+++..|..-....    ..++..+|.+..-.|++++|..+.+++.++..
T Consensus       465 a~val~~~~~e~a~~lar~al~~L~~~~~~~r----~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~  528 (894)
T COG2909         465 AQVALNRGDPEEAEDLARLALVQLPEAAYRSR----IVALSVLGEAAHIRGELTQALALMQQAEQMAR  528 (894)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcccccchhh----hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence            66777889999999999999999988744322    44678899999999999999999999998743

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=94.42  E-value=0.15  Score=25.26  Aligned_cols=31  Identities=23%  Similarity=0.243  Sum_probs=25.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      +.+.|+-+-..|++++|+.+|.++++..-..
T Consensus         8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~   38 (69)
T PF04212_consen    8 LIKKAVEADEAGNYEEALELYKEAIEYLMQA   38 (69)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3466788889999999999999999887654

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.33  E-value=0.38  Score=25.27  Aligned_cols=48  Identities=17%  Similarity=-0.004  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      .+.-++++++..|++         ....+.+|..+...|++++|++.+-..++.++.
T Consensus         7 ~~~al~~~~a~~P~D---------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen    7 DIAALEAALAANPDD---------LDARYALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HHHHHHHHHHHSTT----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             cHHHHHHHHHcCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            355667777766665         344588999999999999999999999988763

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.29  E-value=0.13  Score=22.32  Aligned_cols=28  Identities=14%  Similarity=-0.037  Sum_probs=21.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHH--HHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFM--EALSKV   30 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~--~al~~~   30 (90)
                      +..+|..+..+|++++|+..|+  -+..+.
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld   33 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALD   33 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            3467889999999999999955  665554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=94.20  E-value=0.18  Score=25.68  Aligned_cols=30  Identities=13%  Similarity=0.099  Sum_probs=25.1

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ...++-+-..|++++|+.+|+++++..-+.
T Consensus        10 a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682          10 AINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            345677888999999999999999887765

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2709|consensus

Probab=94.18  E-value=0.27  Score=33.11  Aligned_cols=65  Identities=14%  Similarity=0.170  Sum_probs=44.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh-------CCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL-------GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      +..+.|++|.+.+++++|+.+|++++.+..+.       +.+.....|    ......-.++..-....++--+.|
T Consensus        24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W----~dAcaliQklkes~~~vr~Rl~vL   95 (560)
T KOG2709|consen   24 ASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMW----KDACALIQKLKESKSSVRHRLNVL   95 (560)
T ss_pred             HHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999998873       223345566    444444455555555555444444

>KOG2581|consensus

Probab=94.11  E-value=0.3  Score=32.81  Aligned_cols=65  Identities=23%  Similarity=0.309  Sum_probs=46.3

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      -..|...+.|+.|...-.++.  .|+..   ....|+..++.+|.+..-+++|..|.+++-+|+...|++
T Consensus       216 Lr~yL~n~lydqa~~lvsK~~--~pe~~---snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  216 LRNYLHNKLYDQADKLVSKSV--YPEAA---SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHhhhHHHHHHHHHhhccc--Ccccc---ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            344555666666655544432  12111   134678888999999999999999999999999999963

>KOG2610|consensus

Probab=94.09  E-value=0.32  Score=32.12  Aligned_cols=82  Identities=7%  Similarity=-0.187  Sum_probs=56.1

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-------------------------c--c--hhhHHHHHHhHHHHHHHhc
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGE-------------------------I--I--ADKWEPLLNNLGHVNRKLK   57 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------~--~--~~~~~~~~~~lg~~~~~~g   57 (90)
                      +.+....|++.+|-...++.++-.|..--.                         +  .  .+-..-+..-++..+.+.|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            445566778888777778877777764100                         0  0  0001123355688999999


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          58 KYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      -|++|.+..++++++++.+.=+....++++-
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle  220 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLE  220 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence            9999999999999999977666666666653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.04  E-value=0.45  Score=29.82  Aligned_cols=63  Identities=21%  Similarity=0.094  Sum_probs=50.7

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      .+|..|.+.|.|..|+.-+++.++..++....      ...+..+..+|..+|-.++|.+. .+.|..++
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~------~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~  234 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAV------REALARLEEAYYALGLTDEAKKT-AKVLGANY  234 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhccccccch------HHHHHHHHHHHHHhCChHHHHHH-HHHHHhcC
Confidence            46889999999999999999999998776322      45568899999999999998775 44555553

>KOG1550|consensus

Probab=94.02  E-value=0.68  Score=32.07  Aligned_cols=78  Identities=15%  Similarity=0.099  Sum_probs=53.4

Q ss_pred             hhHHHHHHh-----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-----CHHHHHHHHHHHHhhC
Q psy8498           4 DNVELSSDK-----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----KYEEALEFHKQALVVA   73 (90)
Q Consensus         4 ~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~   73 (90)
                      ..+|.+|..     ..|.++|+.+|+.+.+......    ...+....+.+|.+|.+..     +.+.|+.+|.++....
T Consensus       248 ~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a----~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g  323 (552)
T KOG1550|consen  248 YALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA----TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG  323 (552)
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH----hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence            455655553     3799999999999988322110    0111233478999998854     6788999999998775


Q ss_pred             CCChHHHHHHHHHH
Q psy8498          74 PMKASTFCCIVVKE   87 (90)
Q Consensus        74 ~~~~~~~~~l~~~~   87 (90)
                        ++.+.+.+|.++
T Consensus       324 --~~~a~~~lg~~~  335 (552)
T KOG1550|consen  324 --NPDAQYLLGVLY  335 (552)
T ss_pred             --CchHHHHHHHHH
Confidence              566777777765

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.90  E-value=0.29  Score=25.19  Aligned_cols=26  Identities=15%  Similarity=0.054  Sum_probs=17.2

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      .+.|..+-+.|+.++|+.+|++++..
T Consensus        12 I~kaL~~dE~g~~e~Al~~Y~~gi~~   37 (79)
T cd02679          12 ISKALRADEWGDKEQALAHYRKGLRE   37 (79)
T ss_pred             HHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence            34444455557778888888887754

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.81  E-value=0.13  Score=26.51  Aligned_cols=31  Identities=13%  Similarity=0.004  Sum_probs=27.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ..+.|+.+-+.|+.+.|+.+|+++++...+.
T Consensus        11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg   41 (79)
T cd02679          11 EISKALRADEWGDKEQALAHYRKGLRELEEG   41 (79)
T ss_pred             HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            4577888999999999999999999988876

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>smart00101 14_3_3 14-3-3 homologues

Probab=93.77  E-value=0.89  Score=28.38  Aligned_cols=56  Identities=14%  Similarity=-0.066  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhh
Q psy8498          16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVV   72 (90)
Q Consensus        16 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~   72 (90)
                      -+.|...|++|+++....-++ .++.......|.+.+|++ +++.++|.+..++|...
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~p-t~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~  200 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPP-THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  200 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            357899999999997763222 233333445677777777 69999999888887743

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.65  E-value=0.22  Score=25.47  Aligned_cols=29  Identities=17%  Similarity=0.301  Sum_probs=23.9

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .-|+-+-..|+|++|+.+|.++++.+-..
T Consensus        11 ~~Ave~D~~g~y~eAl~~Y~~aie~l~~~   39 (77)
T cd02683          11 KRAVELDQEGRFQEALVCYQEGIDLLMQV   39 (77)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            44677888999999999999999887664

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.57  E-value=0.36  Score=24.59  Aligned_cols=17  Identities=29%  Similarity=0.337  Sum_probs=12.1

Q ss_pred             hcCHHHHHHHHHHHHhh
Q psy8498          56 LKKYEEALEFHKQALVV   72 (90)
Q Consensus        56 ~g~~~~A~~~~~~al~~   72 (90)
                      .|++++|+++|.+|++.
T Consensus        19 ~gny~eA~~lY~~ale~   35 (75)
T cd02680          19 KGNAEEAIELYTEAVEL   35 (75)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            46777777777777754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.29  E-value=0.25  Score=19.83  Aligned_cols=28  Identities=18%  Similarity=0.122  Sum_probs=22.7

Q ss_pred             cCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498          57 KKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus        57 g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      |+.+.+...|++++...|..+..+....
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            5678999999999999997777765543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1070|consensus

Probab=93.21  E-value=1.1  Score=34.51  Aligned_cols=63  Identities=21%  Similarity=0.062  Sum_probs=50.9

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      ..|.-+|.....+++|.++|+..++.+.+.         .+++..+|..+.++.+-+.|.+..++||+.-|+
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQT---------RKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhcch---------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            346677888888899999998888877644         334488899999999999999999999988875

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.02  E-value=0.47  Score=29.89  Aligned_cols=68  Identities=10%  Similarity=0.012  Sum_probs=45.1

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .......+.+..+.|...|++|++-     ....    ..++...|..-+. .++.+.|...|+++++..|.+...+.
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~-----~~~~----~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~   74 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKD-----KRCT----YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWL   74 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCC-----CCS-----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcC-----CCCC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            3444555566688888889888631     1111    2345778888666 56666699999999999887766543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3824|consensus

Probab=93.02  E-value=0.59  Score=30.59  Aligned_cols=41  Identities=22%  Similarity=0.212  Sum_probs=35.9

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      .+.+.-.++.|+.++|...|+.|++++|.++.++...|...
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~  160 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFR  160 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHH
Confidence            45666778899999999999999999999999998888654

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=92.95  E-value=0.32  Score=28.81  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=30.1

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +.++.+++.++...|+.++|.+..+++..+.|.
T Consensus       144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  144 PNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            556789999999999999999999999999984

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=92.94  E-value=0.28  Score=19.57  Aligned_cols=27  Identities=15%  Similarity=0.011  Sum_probs=22.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALS   28 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~   28 (90)
                      +++.+-..|.+.|++++|.+.|++-.+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            456777889999999999999988654

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2376|consensus

Probab=92.86  E-value=2.4  Score=29.91  Aligned_cols=79  Identities=11%  Similarity=0.020  Sum_probs=59.0

Q ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498           9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus         9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      .+...++-+.|...+.+|++-.......  ......++..++.+-.+.|.-++|.+.+++.++.+|.+..++..+-.+|+
T Consensus       426 l~~~~~~~~~a~~vl~~Ai~~~~~~~t~--s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~  503 (652)
T KOG2376|consen  426 LYYKIKDNDSASAVLDSAIKWWRKQQTG--SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA  503 (652)
T ss_pred             HHHhccCCccHHHHHHHHHHHHHHhccc--chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            3555666667888888888776665333  12223345677888888899999999999999999999998887776665


Q ss_pred             c
Q psy8498          89 V   89 (90)
Q Consensus        89 ~   89 (90)
                      .
T Consensus       504 ~  504 (652)
T KOG2376|consen  504 R  504 (652)
T ss_pred             h
Confidence            4

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=92.76  E-value=0.57  Score=23.08  Aligned_cols=26  Identities=31%  Similarity=0.303  Sum_probs=17.7

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ...|.-.-+.|++++|+++|.+++..
T Consensus         9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    9 IKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            33444455568888888888887754

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.37  E-value=1.6  Score=29.95  Aligned_cols=51  Identities=16%  Similarity=0.006  Sum_probs=42.6

Q ss_pred             HHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498           8 LSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ   68 (90)
Q Consensus         8 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   68 (90)
                      .-+...|+|.++..+-.=..+++|.          +.++.-+|.|.....+|++|-+++..
T Consensus       470 EyLysqgey~kc~~ys~WL~~iaPS----------~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  470 EYLYSQGEYHKCYLYSSWLTKIAPS----------PQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHhcccHHHHHHHHHHHHHhCCc----------HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            3456789999999888888888772          44568899999999999999999876

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2300|consensus

Probab=91.92  E-value=0.94  Score=31.31  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=27.5

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ..+++..|...++++++.||.+...+.+++.
T Consensus       445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            4456778999999999999999999999886

>KOG1308|consensus

Probab=91.70  E-value=0.091  Score=34.30  Aligned_cols=61  Identities=16%  Similarity=-0.096  Sum_probs=50.1

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      +-+.++.+.+....|++-+..|+++-++..     ..    +-.-|...+-+|.|++|..++.++.+++-
T Consensus       153 kr~sv~lkl~kp~~airD~d~A~ein~Dsa-----~~----ykfrg~A~rllg~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  153 KRASVFLKLKKPNAAIRDCDFAIEINPDSA-----KG----YKFRGYAERLLGNWEEAAHDLALACKLDY  213 (377)
T ss_pred             cccceeeeccCCchhhhhhhhhhccCcccc-----cc----cchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence            446778888999999999999999988772     22    24467788889999999999999998864

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=91.69  E-value=1.1  Score=31.34  Aligned_cols=51  Identities=24%  Similarity=0.202  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ..++.+|.+|+......=..  ..  .-.|..+|..+++.+++.+|+....+|-.
T Consensus       296 ~~~~~l~~~AI~sa~~~Y~n--~H--vYPYty~gg~~yR~~~~~eA~~~Wa~aa~  346 (618)
T PF05053_consen  296 PTPLELFNEAISSARTYYNN--HH--VYPYTYLGGYYYRHKRYREALRSWAEAAD  346 (618)
T ss_dssp             --HHHHHHHHHHHHHHHCTT------SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcC--Cc--cccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence            44788899999888776322  11  22457789999999999999999988764

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=91.68  E-value=0.48  Score=19.19  Aligned_cols=27  Identities=19%  Similarity=0.007  Sum_probs=22.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALS   28 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~   28 (90)
                      +++.+-..|.+.|++++|.+.|.+..+
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            456677789999999999999998754

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.57  E-value=0.83  Score=23.31  Aligned_cols=26  Identities=23%  Similarity=0.082  Sum_probs=16.4

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      -..|.-+-+.|++++|+.+|+++++.
T Consensus        10 a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682          10 AINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            33444555567777777777777643

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.54  E-value=0.6  Score=27.29  Aligned_cols=58  Identities=9%  Similarity=-0.115  Sum_probs=39.8

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      |.++...|++.+|+..|+..-+-.+..         +.+.--++.|++-+|+. .=..+.+++++..+
T Consensus        51 ~~l~i~r~~w~dA~rlLr~l~~~~~~~---------p~~kALlA~CL~~~~D~-~Wr~~A~evle~~~  108 (160)
T PF09613_consen   51 GWLHIVRGDWDDALRLLRELEERAPGF---------PYAKALLALCLYALGDP-SWRRYADEVLESGA  108 (160)
T ss_pred             HHHHHHhCCHHHHHHHHHHHhccCCCC---------hHHHHHHHHHHHHcCCh-HHHHHHHHHHhcCC
Confidence            778999999999999999965443322         22334478888888884 34455666666554

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=91.28  E-value=0.67  Score=23.27  Aligned_cols=29  Identities=17%  Similarity=0.194  Sum_probs=23.9

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .-|+-+-..|++++|+.+|.++++..-..
T Consensus        13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~   41 (77)
T smart00745       13 SKALKADEAGDYEEALELYKKAIEYLLEG   41 (77)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            45667788899999999999999887764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.26  E-value=1  Score=28.95  Aligned_cols=53  Identities=11%  Similarity=-0.037  Sum_probs=42.9

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ   68 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   68 (90)
                      +.-....|++.+|...|..++...+++     ..    +..-++.++...|+.+.|...+..
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~~-----~~----~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPEN-----SE----AKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCccc-----ch----HHHHHHHHHHHcCChHHHHHHHHh
Confidence            445678899999999999999998887     22    337789999999999888776665

>KOG1464|consensus

Probab=91.13  E-value=1.2  Score=28.83  Aligned_cols=54  Identities=24%  Similarity=0.186  Sum_probs=41.3

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498          13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus        13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ..++++|+..|++.+++.+.. +    +.--+++-.+-.+++++|++++-...|++.+.
T Consensus        40 e~~p~~Al~sF~kVlelEgEK-g----eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEK-G----EWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             ccCHHHHHHHHHHHHhccccc-c----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            357899999999999987654 1    21123446677788999999999999999774

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=90.98  E-value=1.1  Score=27.79  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=25.2

Q ss_pred             HHHHHhHHHHHH---------HhcCHHHHHHHHHHHHhhCCCC
Q psy8498          43 EPLLNNLGHVNR---------KLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus        43 ~~~~~~lg~~~~---------~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      ++.+-..|..+.         ..++...|+.++++|++++|+-
T Consensus       169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            444455577663         4567889999999999999853

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=90.81  E-value=1.1  Score=33.08  Aligned_cols=33  Identities=18%  Similarity=0.128  Sum_probs=27.8

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      .--|.+|.++|++++-+++|.-|++-.|++|..
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            445889999999999999999999988776543

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.80  E-value=0.81  Score=22.92  Aligned_cols=29  Identities=24%  Similarity=0.250  Sum_probs=24.1

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .-|+-....|++++|+.+|..+++..-..
T Consensus        11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~   39 (75)
T cd02656          11 KQAVKEDEDGNYEEALELYKEALDYLLQA   39 (75)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            45666778899999999999999887664

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG2471|consensus

Probab=90.61  E-value=0.79  Score=31.75  Aligned_cols=45  Identities=22%  Similarity=0.145  Sum_probs=37.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK   55 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~   55 (90)
                      .+.|.|..|...|++-.|-+||+++...+..+     ...|    .+++.|..-
T Consensus       337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-----PrlW----LRlAEcCim  381 (696)
T KOG2471|consen  337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-----PRLW----LRLAECCIM  381 (696)
T ss_pred             hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-----cHHH----HHHHHHHHH
Confidence            35689999999999999999999999999887     3444    888877643

>KOG2114|consensus

Probab=90.46  E-value=1.4  Score=32.18  Aligned_cols=50  Identities=14%  Similarity=0.135  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          21 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        21 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ..|.-|+.+++....+  ....+.++...|.-+++.|++++|...|-+++..
T Consensus       348 ~ly~~Ai~LAk~~~~d--~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  348 NLYKVAINLAKSQHLD--EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             hhHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            3567788887776544  4455778899999999999999999999999853

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.39  E-value=0.91  Score=30.87  Aligned_cols=59  Identities=15%  Similarity=-0.032  Sum_probs=49.2

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ..+..+|..+++.+-|+.+-.+.+.+.|..         ...+...|.|++.+.+|.+|.+-+--+.-
T Consensus       232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~---------frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  232 TKLVTCYLRMRKPDLALNHSHRSINLNPSY---------FRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             HHHHHhhhhcCCCchHHHHHhhhhhcCcch---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357789999999999999999999987765         44557789999999999999887766653

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.38  E-value=0.93  Score=22.84  Aligned_cols=29  Identities=17%  Similarity=0.191  Sum_probs=23.5

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .-|+-....|+|++|+.+|.++++..-..
T Consensus        11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~   39 (75)
T cd02678          11 KKAIEEDNAGNYEEALRLYQHALEYFMHA   39 (75)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            44666788999999999999999887654

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG3807|consensus

Probab=90.37  E-value=2.7  Score=28.03  Aligned_cols=59  Identities=22%  Similarity=0.247  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHhhCC------------C--cc--hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498          16 YTVAENCFMEALSKVKQLGG------------E--II--ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus        16 ~~~A~~~~~~al~~~~~~~~------------~--~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ..+|++.|++|++..+..-.            +  ..  .....-+..+++.|-+++|+..+|.+.++...+.-|
T Consensus       232 i~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  232 IVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence            34688889998886654300            0  00  111223457899999999999999999999877655

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.30  E-value=0.93  Score=22.98  Aligned_cols=29  Identities=14%  Similarity=0.037  Sum_probs=23.5

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .-|+-....|+|++|..+|..+++..-..
T Consensus        11 ~~Av~~D~~g~y~eA~~lY~~ale~~~~~   39 (75)
T cd02684          11 VQAVKKDQRGDAAAALSLYCSALQYFVPA   39 (75)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            44566788899999999999999887664

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.22  E-value=2.7  Score=25.37  Aligned_cols=80  Identities=10%  Similarity=-0.085  Sum_probs=51.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC------------------------------CcchhhHHHHHHhHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGG------------------------------EIIADKWEPLLNNLGHVN   53 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------------~~~~~~~~~~~~~lg~~~   53 (90)
                      .+.+.+..+.|+-..|+..|.++-+--+-...                              ........+.-..||..-
T Consensus        98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa  177 (221)
T COG4649          98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA  177 (221)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence            46688889999999999998876532211100                              011122233446789999


Q ss_pred             HHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498          54 RKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus        54 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ++.|++..|.+.|++... +...|....+.+
T Consensus       178 ~kagd~a~A~~~F~qia~-Da~aprnirqRA  207 (221)
T COG4649         178 YKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA  207 (221)
T ss_pred             HhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence            999999999999999765 333343333333

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.92  E-value=1.4  Score=22.47  Aligned_cols=19  Identities=16%  Similarity=0.221  Sum_probs=11.8

Q ss_pred             HHHhcCHHHHHHHHHHHHh
Q psy8498          53 NRKLKKYEEALEFHKQALV   71 (90)
Q Consensus        53 ~~~~g~~~~A~~~~~~al~   71 (90)
                      .=+.|++++|+.+|.++++
T Consensus        16 ~D~~g~y~eAl~~Y~~aie   34 (77)
T cd02683          16 LDQEGRFQEALVCYQEGID   34 (77)
T ss_pred             HHHhccHHHHHHHHHHHHH
Confidence            3345666777777776664

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=89.82  E-value=1.8  Score=22.67  Aligned_cols=32  Identities=9%  Similarity=0.027  Sum_probs=25.5

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGG   35 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   35 (90)
                      ..++..+...|++++|++.+.+.++..+..+.
T Consensus        26 ~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~   57 (90)
T PF14561_consen   26 YALADALLAAGDYEEALDQLLELVRRDRDYED   57 (90)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence            46789999999999999999999988766633

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.74  E-value=3.7  Score=26.13  Aligned_cols=48  Identities=19%  Similarity=0.088  Sum_probs=40.0

Q ss_pred             HHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          42 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        42 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      ......++=..+...++++.|..+.++.+.++|.++....-.|.+|..
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q  227 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ  227 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh
Confidence            345567788889999999999999999999999988777777777764

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.53  E-value=1.7  Score=27.60  Aligned_cols=64  Identities=9%  Similarity=0.006  Sum_probs=51.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      +...+.+..+.|.++-|...+.++.+..+.....     .+.+....+.++...|+..+|+...+..+.
T Consensus       149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567889999999999999999988865443221     133457789999999999999999998887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.29  E-value=1.1  Score=22.78  Aligned_cols=29  Identities=10%  Similarity=0.153  Sum_probs=23.6

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ..|.-....|+|++|..+|+.+++..-..
T Consensus        11 ~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~   39 (75)
T cd02677          11 RLALEKEEEGDYEAAFEFYRAGVDLLLKG   39 (75)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            44566778899999999999999887764

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.09  E-value=2.4  Score=27.56  Aligned_cols=56  Identities=13%  Similarity=-0.106  Sum_probs=44.3

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      .+..|...|.+.+|+++-++++.+.|-.     .+.+    .-+=.++-..|+--.+...|++--
T Consensus       285 va~~yle~g~~neAi~l~qr~ltldpL~-----e~~n----k~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         285 VARAYLEAGKPNEAIQLHQRALTLDPLS-----EQDN----KGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhhcChhh-----hHHH----HHHHHHHHHhccchhhhhHHHHHH
Confidence            4677899999999999999999998877     2333    556667788899888888877743

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.01  E-value=2  Score=27.90  Aligned_cols=41  Identities=20%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             HHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498          46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK   86 (90)
Q Consensus        46 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~   86 (90)
                      ++-.+..|.+.|.+.+|+++.++++.++|-+...+..+-.+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~  322 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMAS  322 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence            34458889999999999999999999999555544443333

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.99  E-value=4  Score=25.56  Aligned_cols=62  Identities=15%  Similarity=-0.046  Sum_probs=48.3

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      ...-+.+.++..+++...+.-++-.|.+     ....    +.+-.+++-.|+|++|..-.+-+-++.|+.
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkakPtd-----a~~R----hflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAKPTD-----AGGR----HFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCcc-----ccch----hHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            3445667788888988888888776665     2222    667788999999999999999999998854

>KOG3617|consensus

Probab=88.96  E-value=1.1  Score=33.05  Aligned_cols=28  Identities=21%  Similarity=0.182  Sum_probs=24.7

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      ..+|++.+.-+...++.+.|+++|+++-
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~  885 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAG  885 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence            5678999999999999999999999863

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.94  E-value=1.8  Score=29.31  Aligned_cols=60  Identities=22%  Similarity=0.112  Sum_probs=39.1

Q ss_pred             hHHHHHHhhCCHHHHHHH-------HH---------HHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENC-------FM---------EALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ   68 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~-------~~---------~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   68 (90)
                      .++..+.++|-++.|+..       |+         .|+++....+.   ..    .+..||.....+|+++-|.++|++
T Consensus       300 ~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~---~~----~W~~Lg~~AL~~g~~~lAe~c~~k  372 (443)
T PF04053_consen  300 SIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDD---PE----KWKQLGDEALRQGNIELAEECYQK  372 (443)
T ss_dssp             HHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCST---HH----HHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCc---HH----HHHHHHHHHHHcCCHHHHHHHHHh
Confidence            445556677777777665       33         33333332221   23    349999999999999999999999


Q ss_pred             HHh
Q psy8498          69 ALV   71 (90)
Q Consensus        69 al~   71 (90)
                      +-.
T Consensus       373 ~~d  375 (443)
T PF04053_consen  373 AKD  375 (443)
T ss_dssp             CT-
T ss_pred             hcC
Confidence            653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0546|consensus

Probab=88.90  E-value=0.33  Score=31.84  Aligned_cols=72  Identities=25%  Similarity=0.103  Sum_probs=50.9

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .|++.+-...+.+..|...-..+++..+..         .+.++..+..+....++++|++.++.+....|++......+
T Consensus       279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~---------tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~  349 (372)
T KOG0546|consen  279 RNLAAVGLKVKGRGGARFRTNEALRDERSK---------TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL  349 (372)
T ss_pred             cchHHhcccccCCCcceeccccccccChhh---------CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence            345666666666666666655555511111         34568899999999999999999999999999877655444


Q ss_pred             H
Q psy8498          84 V   84 (90)
Q Consensus        84 ~   84 (90)
                      .
T Consensus       350 ~  350 (372)
T KOG0546|consen  350 E  350 (372)
T ss_pred             H
Confidence            3

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=88.88  E-value=1.8  Score=21.66  Aligned_cols=23  Identities=35%  Similarity=0.398  Sum_probs=14.3

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          50 GHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        50 g~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      |.-.-+.|++++|+.+|.++++.
T Consensus        15 Av~~d~~g~~~eAl~~Y~~a~e~   37 (77)
T smart00745       15 ALKADEAGDYEEALELYKKAIEY   37 (77)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            33344457777777777777643

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.66  E-value=2  Score=21.94  Aligned_cols=20  Identities=25%  Similarity=0.360  Sum_probs=13.1

Q ss_pred             HHHhcCHHHHHHHHHHHHhh
Q psy8498          53 NRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        53 ~~~~g~~~~A~~~~~~al~~   72 (90)
                      .=+.|+|++|+.+|+.+++.
T Consensus        16 ~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681          16 RDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHccCHHHHHHHHHHHHHH
Confidence            33457777777777777643

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG2053|consensus

Probab=88.56  E-value=6  Score=29.31  Aligned_cols=70  Identities=19%  Similarity=0.053  Sum_probs=45.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.-+-.+|.+++++++|..+|+++....|..          ..+..+-.+|.+-+.|.+--...-+.-+..|+++-.++.
T Consensus        80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~e----------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs  149 (932)
T KOG2053|consen   80 LQFLQNVYRDLGKLDEAVHLYERANQKYPSE----------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS  149 (932)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhCCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence            3446789999999999999999999988763          122445555666666554444333333456666554443

>KOG2041|consensus

Probab=88.51  E-value=4.5  Score=29.62  Aligned_cols=58  Identities=21%  Similarity=0.294  Sum_probs=39.3

Q ss_pred             hCCHHHHHHHHHH------HHHHHHhh-------------CCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498          13 SFSYTVAENCFME------ALSKVKQL-------------GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus        13 ~g~~~~A~~~~~~------al~~~~~~-------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      -|++++|++.|..      |+++..+.             +.+..++.......++|..+..+..|++|.++|.++-
T Consensus       747 ~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~  823 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG  823 (1189)
T ss_pred             hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4778887777643      33333322             2222234445566999999999999999999999864

>KOG2300|consensus

Probab=88.49  E-value=6.6  Score=27.42  Aligned_cols=61  Identities=23%  Similarity=0.208  Sum_probs=44.6

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +|.-..-.+.|+.|+.+|..|.+.-...      +.++.+-.|+|.+|.+.|+-+   ++|+-.-.+.|.
T Consensus       373 lGlys~sv~~~enAe~hf~~a~k~t~~~------dl~a~~nlnlAi~YL~~~~~e---d~y~~ld~i~p~  433 (629)
T KOG2300|consen  373 LGLYSHSVNCYENAEFHFIEATKLTESI------DLQAFCNLNLAISYLRIGDAE---DLYKALDLIGPL  433 (629)
T ss_pred             HhhHhhhcchHHHHHHHHHHHHHhhhHH------HHHHHHHHhHHHHHHHhccHH---HHHHHHHhcCCC
Confidence            4677777899999999999999876554      556777789999999988743   333333344554

>PF13041 PPR_2: PPR repeat family

Probab=87.66  E-value=1.7  Score=19.66  Aligned_cols=39  Identities=26%  Similarity=0.193  Sum_probs=29.1

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCC-CChHHHHHH
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP-MKASTFCCI   83 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l   83 (90)
                      +++.+=..+.+.|++++|.+.|++..+..- -+..++..+
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l   44 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL   44 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            468888999999999999999999886532 234444433

>KOG2047|consensus

Probab=87.63  E-value=3.3  Score=29.77  Aligned_cols=64  Identities=13%  Similarity=0.098  Sum_probs=44.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ...|..|-..|+.+.|...|++|.+.--..     -+..+.++.+.|..-.+..+++.|++..++|...
T Consensus       391 ~~faklYe~~~~l~~aRvifeka~~V~y~~-----v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v  454 (835)
T KOG2047|consen  391 VEFAKLYENNGDLDDARVIFEKATKVPYKT-----VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV  454 (835)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhcCCccc-----hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence            456777888888888888888887652221     1223455577777777788888888888887754

>KOG1915|consensus

Probab=87.21  E-value=4.4  Score=28.28  Aligned_cols=53  Identities=9%  Similarity=0.157  Sum_probs=39.3

Q ss_pred             hhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498          12 KSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus        12 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      +.++++....+|++-++-.|.+     -..|    ...|.+-..+|+.+.|...|+-|+...
T Consensus       449 qL~efDRcRkLYEkfle~~Pe~-----c~~W----~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  449 QLREFDRCRKLYEKFLEFSPEN-----CYAW----SKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHhhHHHHHHHHHHHHhcChHh-----hHHH----HHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            4567777777777777777766     3445    777888888888888888888877554

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=87.05  E-value=2.5  Score=23.25  Aligned_cols=45  Identities=24%  Similarity=0.302  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      |+++|.++..+.|..         +..++.+|.=+.-..-|+++....+++|.+
T Consensus        63 sve~~s~a~~Lsp~~---------A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   63 SVECFSRAVELSPDS---------AHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hHHHHHHHhccChhH---------HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            555566665555443         444455555544445556666666666543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=86.86  E-value=5.6  Score=24.83  Aligned_cols=75  Identities=13%  Similarity=0.003  Sum_probs=41.4

Q ss_pred             hhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-------CHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-------KYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~   71 (90)
                      ..++|..|..    ..|+.+|..+|++|.+.--...        ......+|..|..-.       +...|...|.++-.
T Consensus       112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~  183 (292)
T COG0790         112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE  183 (292)
T ss_pred             HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH
Confidence            4567777776    4589999999999887632210        011244444444431       22356666666554


Q ss_pred             hCCCChHHHHHHHHHH
Q psy8498          72 VAPMKASTFCCIVVKE   87 (90)
Q Consensus        72 ~~~~~~~~~~~l~~~~   87 (90)
                      ..  ++.+...+|.+|
T Consensus       184 ~~--~~~a~~~lg~~y  197 (292)
T COG0790         184 LG--NPDAQLLLGRMY  197 (292)
T ss_pred             hc--CHHHHHHHHHHH
Confidence            43  444555555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.69  E-value=1.9  Score=25.02  Aligned_cols=56  Identities=14%  Similarity=-0.119  Sum_probs=36.5

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      |.++...|++++|+..|++..+-.+..         +...--++.|++-+|+. .=..+..++++-
T Consensus        51 g~l~i~rg~w~eA~rvlr~l~~~~~~~---------p~~kAL~A~CL~al~Dp-~Wr~~A~~~le~  106 (153)
T TIGR02561        51 GWLLIARGNYDEAARILRELLSSAGAP---------PYGKALLALCLNAKGDA-EWHVHADEVLAR  106 (153)
T ss_pred             HHHHHHcCCHHHHHHHHHhhhccCCCc---------hHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Confidence            778999999999999998876643322         22224467777777774 334444555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2610|consensus

Probab=86.29  E-value=2.3  Score=28.32  Aligned_cols=27  Identities=19%  Similarity=0.004  Sum_probs=22.4

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      +..+.+-|-|++|++.-++++++.+..
T Consensus       182 aFgL~E~g~y~dAEk~A~ralqiN~~D  208 (491)
T KOG2610|consen  182 AFGLEECGIYDDAEKQADRALQINRFD  208 (491)
T ss_pred             HhhHHHhccchhHHHHHHhhccCCCcc
Confidence            566778899999999999999887654

>KOG2396|consensus

Probab=86.20  E-value=6.2  Score=27.52  Aligned_cols=58  Identities=17%  Similarity=0.220  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCCCChHHH
Q psy8498          14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus        14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      +.|.+--..|.+++...|.+     .+.|    ..-|.-.+.-+. .+.|...+.++++.+|+.+..+
T Consensus       119 ~~~~~v~ki~~~~l~~Hp~~-----~dLW----I~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw  177 (568)
T KOG2396|consen  119 KTYGEVKKIFAAMLAKHPNN-----PDLW----IYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW  177 (568)
T ss_pred             cchhHHHHHHHHHHHhCCCC-----chhH----HhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence            33777777788888887777     4555    444555555555 8888899999999988877654

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=85.85  E-value=1.6  Score=17.61  Aligned_cols=27  Identities=19%  Similarity=0.108  Sum_probs=23.0

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      .++.+-.++.+.|+++.|.+.+++-.+
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~   29 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKE   29 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            357788899999999999999998654

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=85.83  E-value=3.2  Score=22.39  Aligned_cols=25  Identities=16%  Similarity=0.024  Sum_probs=21.0

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSK   29 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~   29 (90)
                      .-|.+....||+..|++...++.+.
T Consensus        64 ~~Gl~al~~G~~~~A~k~~~~a~~~   88 (108)
T PF07219_consen   64 SRGLIALAEGDWQRAEKLLAKAAKL   88 (108)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3477888899999999999999665

These are membrane protein involved in a late step of protoheme IX synthesis [].

>KOG1915|consensus

Probab=85.64  E-value=4.8  Score=28.10  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=38.4

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498          13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus        13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      ++++..|...|++|+...-.+     .+.|    ...+.+-.+......|...+.+|+.+-|.-...+
T Consensus        86 q~e~~RARSv~ERALdvd~r~-----itLW----lkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW  144 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRN-----ITLW----LKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW  144 (677)
T ss_pred             HHHHHHHHHHHHHHHhccccc-----chHH----HHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence            445555666666666554333     3444    6777777888888888888888888877544433

>KOG3616|consensus

Probab=85.62  E-value=5.7  Score=29.42  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=41.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHH------HHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFME------ALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      +...|.++-+..++++|+++|++      |+++..---+    +...+.-...|.-+..+|+++.|+..|-++-
T Consensus       664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp----~evv~lee~wg~hl~~~~q~daainhfiea~  733 (1636)
T KOG3616|consen  664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP----EEVVKLEEAWGDHLEQIGQLDAAINHFIEAN  733 (1636)
T ss_pred             HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc----HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence            34567777888888888888765      4554433211    1112223456777888899999998887754

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=85.34  E-value=6.9  Score=24.43  Aligned_cols=62  Identities=18%  Similarity=0.145  Sum_probs=39.2

Q ss_pred             CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHH
Q psy8498          15 SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMK-ASTFCCIVVKE   87 (90)
Q Consensus        15 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~   87 (90)
                      ++.+|..+|+.+.+.           ..+...+++|..|..    ..+..+|..+|++|....... ..+...+|..+
T Consensus        92 ~~~~A~~~~~~~a~~-----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~  158 (292)
T COG0790          92 DKTKAADWYRCAAAD-----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAY  158 (292)
T ss_pred             cHHHHHHHHHHHhhc-----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence            456666666633322           113445789998888    458999999999998775322 12255666554

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.33  E-value=11  Score=26.62  Aligned_cols=64  Identities=11%  Similarity=-0.080  Sum_probs=48.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK   67 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   67 (90)
                      ..++....-.+++..+......+.+...+.+.+......+.++.-.|..+...|+.+.|+.+|.
T Consensus       365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            3457777889999999999999888776554321122234456778999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3364|consensus

Probab=85.26  E-value=1  Score=25.81  Aligned_cols=30  Identities=7%  Similarity=-0.048  Sum_probs=26.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .-++..+.+.++|+++.++....++..|++
T Consensus        75 yYLAvg~yRlkeY~~s~~yvd~ll~~e~~n  104 (149)
T KOG3364|consen   75 YYLAVGHYRLKEYSKSLRYVDALLETEPNN  104 (149)
T ss_pred             hhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence            457889999999999999999999987765

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=85.00  E-value=5.5  Score=23.01  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=26.1

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ++.+..+|.+|.+.|+..++-+...+|-+-.
T Consensus       120 p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen  120 PEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            5667899999999999999999999987643

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1310|consensus

Probab=84.87  E-value=4.3  Score=28.66  Aligned_cols=19  Identities=16%  Similarity=0.081  Sum_probs=10.6

Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q psy8498          15 SYTVAENCFMEALSKVKQL   33 (90)
Q Consensus        15 ~~~~A~~~~~~al~~~~~~   33 (90)
                      ....++..|.+++...|..
T Consensus       389 ~~~~~i~~~s~a~q~~~~~  407 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVPDA  407 (758)
T ss_pred             HHHHHHHHHHHHhhhccch
Confidence            3445566666666655543

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=84.75  E-value=3  Score=23.30  Aligned_cols=29  Identities=38%  Similarity=0.387  Sum_probs=25.0

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      ..+|..+...|++++|..+|-+|+...|+
T Consensus        67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q   95 (121)
T PF02064_consen   67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ   95 (121)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence            55788899999999999999999999874

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.70  E-value=3.8  Score=20.88  Aligned_cols=28  Identities=14%  Similarity=0.068  Sum_probs=23.4

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      -|.--...|+|++|+.+|..+++..-..
T Consensus        12 ~A~~eD~~gny~eA~~lY~~ale~~~~e   39 (75)
T cd02680          12 QAFDEDEKGNAEEAIELYTEAVELCINT   39 (75)
T ss_pred             HHHHhhHhhhHHHHHHHHHHHHHHHHHh
Confidence            3555678899999999999999988774

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>smart00671 SEL1 Sel1-like repeats

Probab=83.03  E-value=2.4  Score=17.35  Aligned_cols=27  Identities=37%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             HHhHHHHHHHh----cCHHHHHHHHHHHHhh
Q psy8498          46 LNNLGHVNRKL----KKYEEALEFHKQALVV   72 (90)
Q Consensus        46 ~~~lg~~~~~~----g~~~~A~~~~~~al~~   72 (90)
                      .+.+|.+|..-    .+.++|..+|+++.+.
T Consensus         4 ~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~   34 (36)
T smart00671        4 QYNLGQMYEYGLGVKKDLEKALEYYKKAAEL   34 (36)
T ss_pred             HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence            46678777642    3889999999998754

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=82.86  E-value=7.3  Score=25.18  Aligned_cols=60  Identities=17%  Similarity=0.017  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498          14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus        14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      -.++.|.++..+|+-.++..++...- .  .+-+..+..|+...+|+-|-.||..|+.+..++
T Consensus        53 ~~~~n~~e~~d~ALm~Ae~r~D~~~I-G--~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d  112 (368)
T COG5091          53 ATMENAKELLDKALMTAEGRGDRSKI-G--LVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD  112 (368)
T ss_pred             cChhhHHHHHHHHHHhhhccCCccee-e--eehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence            34678999999999998887655321 1  123667888999999999999999999875443

>PF15469 Sec5: Exocyst complex component Sec5

Probab=82.47  E-value=7.8  Score=22.78  Aligned_cols=72  Identities=18%  Similarity=0.162  Sum_probs=41.8

Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhh--CCCcchhhHHHHHHh----HHHHHHHhc----CHHHHHHHHHHHHhhCCCChHH
Q psy8498          10 SDKSFSYTVAENCFMEALSKVKQL--GGEIIADKWEPLLNN----LGHVNRKLK----KYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus        10 ~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~----lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      +...|+|+.++..|.+|..+....  ........|..+-..    -..++.++.    ..++..++....++++|....+
T Consensus        96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~~~~dPi  175 (182)
T PF15469_consen   96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLELNVEEDPI  175 (182)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCCCHH
Confidence            457899999999999999999887  222222233222111    122333333    3555666666666777754444


Q ss_pred             HH
Q psy8498          80 FC   81 (90)
Q Consensus        80 ~~   81 (90)
                      +.
T Consensus       176 ~~  177 (182)
T PF15469_consen  176 WY  177 (182)
T ss_pred             HH
Confidence            43

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=82.42  E-value=2.8  Score=17.58  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=18.6

Q ss_pred             HHhHH--HHHHHhc-----CHHHHHHHHHHHHhh
Q psy8498          46 LNNLG--HVNRKLK-----KYEEALEFHKQALVV   72 (90)
Q Consensus        46 ~~~lg--~~~~~~g-----~~~~A~~~~~~al~~   72 (90)
                      .+++|  .++....     ++++|..+|++|.+.
T Consensus         4 ~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~   37 (39)
T PF08238_consen    4 QYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ   37 (39)
T ss_dssp             HHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence            46677  4444433     579999999998764

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=82.07  E-value=12  Score=28.07  Aligned_cols=68  Identities=25%  Similarity=0.209  Sum_probs=47.6

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      .-+.+|+.+|+|++-+++|.-|++.+|....-  ......+.+++=.+.++..+  .|...---++.+.|..
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  624 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEI--SRLRDHLVYRLHESLYKHRR--EALVFMLLALWIAPEK  624 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhCccc
Confidence            45789999999999999999999999887443  22223344666666655544  5666666677777643

>KOG1839|consensus

Probab=81.79  E-value=12  Score=28.90  Aligned_cols=70  Identities=21%  Similarity=0.131  Sum_probs=53.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      +..|++.++...++++-|+++.+.|.+......++.. .....++..++.++.-++++..|+...+....+
T Consensus      1059 ~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~-l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1059 SFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE-LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc-hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            3578899999999999999999999997766644211 112345677888888888888888888777654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.67  E-value=14  Score=25.19  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=24.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ   32 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   32 (90)
                      +..+|.....+|+++-|+++|+++-+...-
T Consensus       350 W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L  379 (443)
T PF04053_consen  350 WKQLGDEALRQGNIELAEECYQKAKDFSGL  379 (443)
T ss_dssp             HHHHHHHHHHTTBHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhcCcccc
Confidence            568999999999999999999997665443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=80.56  E-value=2  Score=23.97  Aligned_cols=29  Identities=21%  Similarity=0.096  Sum_probs=18.3

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .+|-.+...|++++|..+|-+|+.+.|..
T Consensus        68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP   96 (121)
T PF02064_consen   68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP   96 (121)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence            45666666677777777777777665543

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
3hym_B	330	Insights Into Anaphase Promoting Complex Tpr Subdom		4e-20

>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain Assembly From A Cdc26-Apc6 Structure Length = 330

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268
Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 269 NASTYSAI 276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	6e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	7e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-04

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 66.2 bits (162), Expect = 1e-14
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 269 NASTYSAI 276

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
             +AE  F +ALS         IA +   +++ +G V  +  +++ A ++   AL    
Sbjct: 175 SKLAERFFSQALS---------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 46  LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
           +  +G         + A  F  QAL +AP        +
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.9 bits (140), Expect = 9e-12
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
              A N F  AL  VK+         W     NLGH  RKLK Y+ A++   Q L+++  
Sbjct: 491 MQTAINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548

Query: 76  KASTFCCI 83
            A+    I
Sbjct: 549 DANVHTAI 556

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 9/59 (15%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
             +A      + +         +      LLN LG V       + A+   + AL++  
Sbjct: 457 ILLANEYLQSSYA---------LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 46  LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
              LG  + +L     A E+ + +  +          +
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 50.0 bits (120), Expect = 3e-09
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 16  YTVAENCFMEALSKVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
           +  A  CF+E    +  L  +    +         +  V         A + ++++LV A
Sbjct: 82  WDAARRCFLEERELLASLPEDPLAASA----NAYEVATVALHFGDLAGARQEYEKSLVYA 137

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 9/58 (15%)

Query: 16  YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
              A   + ++L   +Q         A         LG + ++ K   EA +   +A 
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACA------FRGLGDLAQQEKNLLEAQQHWLRAR 174

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 9/61 (14%)

Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
          +  A   F     + ++ G    E  A      L+ +G V R    ++ A     +   +
Sbjct: 42 FDEARASFQALQQQAQKSGDHTAEHRA------LHQVGMVERMAGNWDAARRCFLEEREL 95

Query: 73 A 73
           
Sbjct: 96 L 96

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 9/58 (15%)

Query: 19 AENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
          A +  +        L        A         LG+V   + +++EA    +     A
Sbjct: 5  AHDYALAERQAQALLAHPATASGA------RFMLGYVYAFMDRFDEARASFQALQQQA 56

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 4   DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEA 62
           D  E   +   +   A + + E LS V  LG              NLG+ +  L  + +A
Sbjct: 151 DVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR----AFGNLGNTHYLLGNFRDA 206

Query: 63  LEFHKQAL 70
           +  H+Q L
Sbjct: 207 VIAHEQRL 214

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
           +  A   + + L   +QL    + A        +LG+    L+ YE+A+++H + L +A
Sbjct: 243 FETASEYYKKTLLLARQLKDRAVEAQ----SCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.9 bits (112), Expect = 7e-08
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A +  ++ L+  ++L   I           +LG+    L  +++A+ F ++ L
Sbjct: 283 YEKAIDYHLKHLAIAQELNDRIGEGR----ACWSLGNAYTALGNHDQAMHFAEKHL 334

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.9 bits (112), Expect = 7e-08
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A       L+  + +G ++  A        NLG+  + L  ++EA+   ++ L
Sbjct: 63  YAKALEYHHHDLTLARTIGDQLGEAK----ASGNLGNTLKVLGNFDEAIVCCQRHL 114

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           +  A     + L   K+ G +           +NLG+    L ++E A E++K+ L
Sbjct: 203 FRDAVIAHEQRLLIAKEFGDKAAERR----AYSNLGNAYIFLGEFETASEYYKKTL 254

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.9 bits (99), Expect = 4e-06
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
               + F  A+    Q+G E +      + + LG+    L  Y +ALE+H   L +A
Sbjct: 25 CRAGVSFFEAAV----QVGTEDLKTLSA-IYSQLGNAYFYLHDYAKALEYHHHDLTLA 77

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 38.4 bits (90), Expect = 9e-05
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVA 73
          L   G    K       + F + A+ V 
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVG 39

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 50.0 bits (120), Expect = 5e-09
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 3   LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEE 61
            +  +   D   + T A   + E L  ++ LG              NLG+    L  ++ 
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR----ACGNLGNTYYLLGDFQA 241

Query: 62  ALEFHKQAL 70
           A+E H++ L
Sbjct: 242 AIEHHQERL 250

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 49.6 bits (119), Expect = 9e-09
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A       L+  K +   +  A        NLG+  + + +++EA    ++ L
Sbjct: 102 YNKAMQYHKHDLTLAKSMNDRLGEAK----SSGNLGNTLKVMGRFDEAAICCERHL 153

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 16  YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
           +  A       L+  ++LG   GE  A        +LG+ +  +  +E AL++ +Q L +
Sbjct: 319 FNTAIEYHNRHLAIAQELGDRIGEARA------CWSLGNAHSAIGGHERALKYAEQHLQL 372

Query: 73  A 73
           A
Sbjct: 373 A 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 47.3 bits (113), Expect = 5e-08
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 16  YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
           +  A   +   L+   +LG    E  +        +LG+    L ++  A+E+H + L +
Sbjct: 279 FEDAAEHYKRTLALAVELGEREVEAQS------CYSLGNTYTLLHEFNTAIEYHNRHLAI 332

Query: 73  A 73
           A
Sbjct: 333 A 333

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.9 bits (112), Expect = 6e-08
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 9/58 (15%)

Query: 16  YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           +  A     E L   ++ G    E  A       +NLG+ +  L ++E+A E +K+ L
Sbjct: 239 FQAAIEHHQERLRIAREFGDRAAERRA------NSNLGNSHIFLGQFEDAAEHYKRTL 290

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
                  F  A+    +    + A     + + LG+    L  Y +A+++HK  L
Sbjct: 64  CRAGVAFFQAAIQAGTEDLRTLSA-----IYSQLGNAYFYLGDYNKAMQYHKHDL 113

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 6/56 (10%), Positives = 11/56 (19%), Gaps = 5/56 (8%)

Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
               N       +     G   +       L   G            + F + A+
Sbjct: 24 GGGGTNSHDGNSQQGSGSDGGSSMC----LELALEGERLCNAGDCRAGVAFFQAAI 75

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 22/73 (30%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKY--------------- 59
           +  A  C    L+  +QLG  +         L NLG+V     K+               
Sbjct: 142 FDEAAICCERHLTLARQLGDRLSEGR----ALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197

Query: 60  --EEALEFHKQAL 70
               A+EF+++ L
Sbjct: 198 ALTRAVEFYQENL 210

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 3   LDNVELSSDKSFSYTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKY 59
            D  E   D   +   A + + E LS V  LG    +  A        NLG+ +  L  +
Sbjct: 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA------FGNLGNTHYLLGNF 199

Query: 60  EEALEFHKQAL 70
            +A+  H+Q L
Sbjct: 200 RDAVIAHEQRL 210

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 47.6 bits (114), Expect = 4e-08
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A +  ++ L+  ++L   I           +LG+    L  +++A+ F ++ L
Sbjct: 279 YEKAIDYHLKHLAIAQELKDRIGEGR----ACWSLGNAYTALGNHDQAMHFAEKHL 330

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
           +  A   + + L   +QL    + A        +LG+    L+ YE+A+++H + L +A
Sbjct: 239 FETASEYYKKTLLLARQLKDRAVEAQ----SCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A       L+  + +G ++  A        NLG+  + L  ++EA+   ++ L
Sbjct: 59  YAKALEYHHHDLTLARTIGDQLGEAK----ASGNLGNTLKVLGNFDEAIVCCQRHL 110

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.2 bits (105), Expect = 7e-07
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 16  YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           +  A     + L   K+ G    E  A       +NLG+    L ++E A E++K+ L
Sbjct: 199 FRDAVIAHEQRLLIAKEFGDKAAERRA------YSNLGNAYIFLGEFETASEYYKKTL 250

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
               + F  A+    Q+G E +      + + LG+    L  Y +ALE+H   L
Sbjct: 21 CRAGVSFFEAAV----QVGTEDLKTLSA-IYSQLGNAYFYLHDYAKALEYHHHDL 70

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVA 73
          L   G    K       + F + A+ V 
Sbjct: 8  LALEGERLCKSGDCRAGVSFFEAAVQVG 35

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 46.8 bits (112), Expect = 4e-08
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
          +  A     + L   K+ G    E IA       +NLG+    L ++E A E++K+ L++
Sbjct: 25 FRDAVIAHEQRLLIAKEFGDKAAERIA------YSNLGNAYIFLGEFETASEYYKKTLLL 78

Query: 73 A 73
          A
Sbjct: 79 A 79

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 46.4 bits (111), Expect = 6e-08
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A +  ++ L+  ++L   I           +LG+    L  +++A+ F ++ L
Sbjct: 105 YEKAIDYHLKHLAIAQELKDRIGEGR----ACWSLGNAYTALGNHDQAMHFAEKHL 156

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 46.0 bits (110), Expect = 8e-08
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           +  A   + + L   +QL      A        +LG+    L+ YE+A+++H + L
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVEAQ----SCYSLGNTYTLLQDYEKAIDYHLKHL 116

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.1 bits (100), Expect = 2e-06
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVA 73
            NLG+ +  L  + +A+  H+Q L++A
Sbjct: 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIA 39

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
             +A   F +A    ++   +++      +L  L     K  + ++A +F ++ L
Sbjct: 238 DQMAVEHFQKAAKVSREKVPDLLPK----VLFGLSWTLCKAGQTQKAFQFIEEGL 288

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A   + EA  ++  +  +I  A+        +      +K+   ++    QAL
Sbjct: 117 YVEAIGYYREAEKELPFVSDDIEKAE----FHFKVAEAYYHMKQTHVSMYHILQAL 168

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A      AL     +  +  IA      L N+ +   +    + A+E  ++A 
Sbjct: 198 YDKALPHLEAALELAMDIQNDRFIAI----SLLNIANSYDRSGDDQMAVEHFQKAA 249

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 6/57 (10%)

Query: 16  YTVAENCFMEALSKVKQLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
             V+    ++AL   +                L  +       K Y++AL   + AL
Sbjct: 157 THVSMYHILQALDIYQNHPLYSIRTIQ----SLFVIAGNYDDFKHYDKALPHLEAAL 209

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 14  FSYTVAENCFMEALSKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           +  TV E    + LS  ++      I         +   V      +E+A  F+++ L
Sbjct: 310 YKETVDERKIHDLLSYFEKKNLHAYIEA----CARSAAAVFESSCHFEQAAAFYRKVL 363

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.0 bits (104), Expect = 8e-07
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
           Y  A + F +A S  +      ++       L N+G       +YE+A+ + K+A+ V 
Sbjct: 200 YEDAISHFQKAYSMAEAEKQPQLMGR----TLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 16  YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A   F +A SK+  +   I  A+        +      +K+   ++++ +QA 
Sbjct: 119 YLSAIKFFKKAESKLIFVKDRIEKAE----FFFKMSESYYYMKQTYFSMDYARQAY 170

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 16  YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
           Y  A   F  A++  ++         A         +  ++ KL K ++A E+H + +  
Sbjct: 240 YEDAIPYFKRAIAVFEESNILPSLPQA------YFLITQIHYKLGKIDKAHEYHSKGMAY 293

Query: 73  A 73
           +
Sbjct: 294 S 294

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 16  YTVAENCFMEALSKVKQLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
              + +   +A    K+       +        +        LK+YE+A+   ++A  +A
Sbjct: 159 TYFSMDYARQAYEIYKEHEAYNIRLLQ----CHSLFATNFLDLKQYEDAISHFQKAYSMA 214

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 35.6 bits (82), Expect = 7e-04
 Identities = 2/26 (7%), Positives = 10/26 (38%)

Query: 45  LLNNLGHVNRKLKKYEEALEFHKQAL 70
              ++     + K +++A  +  +  
Sbjct: 341 FAIDVAKYYHERKNFQKASAYFLKVE 366

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.4 bits (98), Expect = 7e-06
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 16 YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
          Y VA     +AL    K  G +   +A     +LN L  V R   KY++A      AL
Sbjct: 43 YEVAVPLCKQALEDLEKTSGHDHPDVAT----MLNILALVYRDQNKYKDAANLLNDAL 96

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 16  YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A N   +AL+ + K LG +   +A      LNNL  +  K  KY+EA    K+AL
Sbjct: 85  YKDAANLLNDALAIREKTLGKDHPAVAA----TLNNLAVLYGKRGKYKEAEPLCKRAL 138

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 39.4 bits (93), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 16  YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  AE     AL  + K LG +   +A      LNNL  + +   KYEE   ++++AL
Sbjct: 127 YKEAEPLCKRALEIREKVLGKDHPDVAK----QLNNLALLCQNQGKYEEVEYYYQRAL 180

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 16  YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71
           Y   E  +  AL     +LG +   +A       NNL     K  K+++A   +K+ L 
Sbjct: 169 YEEVEYYYQRALEIYQTKLGPDDPNVAK----TKNNLASCYLKQGKFKQAETLYKEILT 223

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 8/59 (13%)

Query: 16  YTVAENCFMEALSKV--KQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           +  AE  + E L++   ++ G           P+  +         K ++   F +   
Sbjct: 211 FKQAETLYKEILTRAHEREFGSVDDENK----PIWMHAEEREECKGKQKDGTSFGEYGG 265

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 46  LNNLGHVNRKLKKYEEALEFHKQAL 70
           L NLG + R+  K+E A    + A+
Sbjct: 281 LKNLGALYRRQGKFEAAETLEEAAM 305

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
          L+NL        +YE A+   KQAL
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQAL 54

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 16  YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  A +   +AL+ + K LG +   +A      LNNL  +  K  KY+EA    K+AL
Sbjct: 59  YKEAAHLLNDALAIREKTLGKDHPAVAA----TLNNLAVLYGKRGKYKEAEPLCKRAL 112

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 16 YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
             A     +AL    K  G +   +A     +LN L  V R   KY+EA      AL
Sbjct: 17 RGSAVPLCKQALEDLEKTSGHDHPDVAT----MLNILALVYRDQNKYKEAAHLLNDAL 70

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 7/57 (12%)

Query: 16  YTVAENCFMEALSKVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
              +           K    +   +       L +LG + R+  K E A      A 
Sbjct: 228 RRDSAPYGEYGSWY-KACKVDSPTVNT----TLRSLGALYRRQGKLEAAHTLEDCAS 279

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 38.7 bits (91), Expect = 6e-05
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 8/59 (13%)

Query: 16  YTVAENCFMEALSKVKQ-LGGEI---IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  AE  + E L++  +   G +         P+  +         K  ++  + +   
Sbjct: 185 YQDAETLYKEILTRAHEKEFGSVNGDNK----PIWMHAEEREESKDKRRDSAPYGEYGS 239

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 38.3 bits (90), Expect = 7e-05
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 16  YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           Y  AE     AL  + K LG     +A      LNNL  + +   K EE   ++++AL
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHPDVAK----QLNNLALLCQNQGKAEEVEYYYRRAL 154

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 16  YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
               E  +  AL     +LG +   +A       NNL     K  KY++A   +K+ L
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAK----TKNNLASCYLKQGKYQDAETLYKEIL 196

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.4 bits (90), Expect = 8e-05
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           YT A + +   +     +     A+        + H   K +K  EA+    + L
Sbjct: 250 YTDATSKYESVMKTEPSV-----AEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 7/29 (24%), Positives = 10/29 (34%)

Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
             LG   R L +Y +A       +   P
Sbjct: 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFP 58

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
           YT A + +   +     +     A+        + H   K +K  EA+    + L
Sbjct: 273 YTDATSKYESVMKTEPSI-----AEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 6/55 (10%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
            + A + + +A +  +       A +    +     +  + +K++EA    ++  
Sbjct: 131 LSKAVHLYQQAAAVFENEERLRQAAEL---IGKASRLLVRQQKFDEAAASLQKEK 182

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 19  AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
            +  ++EA     Q G  I  D        LG +     ++  A++    AL V P
Sbjct: 196 VKELYLEAAH---QNGDMIDPDLQ----TGLGVLFHLSGEFNRAIDAFNAALTVRP 244

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 35.4 bits (83), Expect = 4e-04
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
           NLG+   K   Y+EA+E++++AL + P
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDP 40

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 34.3 bits (80), Expect = 6e-04
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
           NLG+   K   Y+EA+E++++AL + P
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDP 40

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 35.1 bits (82), Expect = 7e-04
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
           NLG+   K   Y+EA+E++++AL
Sbjct: 5  YNLGNAYYKQGDYDEAIEYYQKAL 28

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 35.2 bits (82), Expect = 9e-04
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 46  LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
           LNNL ++ R+    EEA+  +++AL V P
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFP 336

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 35.2 bits (82), Expect = 9e-04
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 9/59 (15%)

Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
             + +    A+                   +NLG+V ++  + +EA+E ++ AL + P
Sbjct: 49 LDRSAHFSTLAIK---------QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 35.5 bits (82), Expect = 9e-04
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 19  AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
           A     +A           +  + E     L  +  +++K +EA+E  + + ++A 
Sbjct: 447 AIKLLTKACE---------LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.72
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.66
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.65
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.64
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.64
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.63
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.63
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.63
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.62
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.62
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.58
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.57
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.57
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.56
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.56
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.55
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.54
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.54
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.53
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.52
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.51
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.51
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.51
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.51
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.51
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.51
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.5
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.5
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.49
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.49
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.48
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.48
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.48
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.47
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.46
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.46
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.46
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.46
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.46
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.45
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.45
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.45
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.45
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.45
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.44
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.44
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.44
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.43
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.43
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.42
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.42
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.42
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.41
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.41
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.41
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.41
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.41
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.41
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.4
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.4
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.39
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.39
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.38
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.37
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.36
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.36
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.35
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.35
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.35
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.35
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.34
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.34
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.34
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.33
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.33
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.33
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.32
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.32
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.32
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.32
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.31
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.31
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.31
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.31
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.31
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.31
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.3
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.3
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.3
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.29
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.29
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.28
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.28
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.27
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.27
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.26
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.26
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.26
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.26
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.25
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.24
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.24
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.24
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.22
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.21
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.2
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.2
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.19
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.15
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.14
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.13
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.13
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.1
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.1
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.09
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.06
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.06
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.05
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.04
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.03
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.02
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.99
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.98
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.98
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.97
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.94
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.94
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.91
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.91
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.89
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.86
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.82
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.76
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.74
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.72
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.66
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.59
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.59
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.54
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.53
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.52
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.5
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.46
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.43
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.4
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.4
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.4
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.39
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.38
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.34
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.34
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.33
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.29
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.24
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.24
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.18
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.11
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.1
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.07
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.06
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.04
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.0
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.85
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.76
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.6
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.58
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.56
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.34
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.23
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.02
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.66
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.44
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.39
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.31
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.0
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.83
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.68
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.62
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.62
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.52
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.36
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.29
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.2
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.17
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.05
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.05
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.86
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.79
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.65
2npm_A	260	14-3-3 domain containing protein; cell regulator p	94.34
2o8p_A	227	14-3-3 domain containing protein; signaling protei	94.24
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.01
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.88
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.47
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	93.45
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	93.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.35
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	93.26
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	93.07
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.86
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	92.71
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.68
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	92.46
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.32
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	92.07
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.94
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.92
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	91.61
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.53
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	91.26
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	91.22
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	90.91
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	90.54
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.53
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	89.87
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	89.72
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	89.39
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	89.28
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	89.19
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	89.19
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	88.89
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	88.64
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	87.73
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	87.17
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	87.14
2yin_A	436	DOCK2, dedicator of cytokinesis protein 2; apoptos	87.05
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	86.8
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	86.38
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	86.14
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	85.64
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	85.6
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	85.59
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	85.56
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	85.52
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	85.3
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	84.43
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	84.24
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	83.55
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	82.29
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	81.42
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	80.09

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.75  E-value=2.6e-17  Score=90.38  Aligned_cols=78  Identities=15%  Similarity=0.048  Sum_probs=64.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.+.|..+.+.|+|++|+.+|++++++.|..         +.++.++|.++.++|++++|+.+|+++++++|+++.++.+
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            4678888999999999999999999887766         4455888888888888888888888888888888888888


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        87 lg~~~~~   93 (126)
T 4gco_A           87 KAACLVA   93 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887753

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.74  E-value=2.8e-17  Score=93.12  Aligned_cols=79  Identities=9%  Similarity=-0.072  Sum_probs=73.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ++.++|.++...|++++|+.+|++++++.|..         +..++++|.++..+|++++|+.+|+++++++|+++.+++
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            35789999999999999999999999998877         445599999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q psy8498          82 CIVVKEGV   89 (90)
Q Consensus        82 ~l~~~~~~   89 (90)
                      ++|.++..
T Consensus       109 ~lg~~~~~  116 (151)
T 3gyz_A          109 HTGQCQLR  116 (151)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999864

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.72  E-value=1.5e-16  Score=89.47  Aligned_cols=78  Identities=10%  Similarity=0.014  Sum_probs=71.9

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ...++|.+|...|+|++|+++|++++++.|+.         +.++.++|.++.++|++++|+.+|+++++++|+++.++.
T Consensus        33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  103 (150)
T 4ga2_A           33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERD---------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL  103 (150)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence            34689999999999999999999999998877         556699999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      ++|.++.
T Consensus       104 ~la~~~~  110 (150)
T 4ga2_A          104 KIAELLC  110 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.70  E-value=2.5e-16  Score=86.41  Aligned_cols=77  Identities=10%  Similarity=-0.035  Sum_probs=71.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.++..+|++++|+..|++++++.|..         ...+.++|.++..+|++++|+++|+++++++|+++.++.
T Consensus        49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~  119 (126)
T 4gco_A           49 LYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---------IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE  119 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            35789999999999999999999999998776         556699999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy8498          82 CIVVKE   87 (90)
Q Consensus        82 ~l~~~~   87 (90)
                      +++.+.
T Consensus       120 ~l~~~l  125 (126)
T 4gco_A          120 GVRNCL  125 (126)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            998774

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.68  E-value=7.2e-17  Score=88.58  Aligned_cols=78  Identities=15%  Similarity=0.093  Sum_probs=67.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh----
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA----   77 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----   77 (90)
                      ++.++|.++...|+|++|+.+|++++++.|..         +.+++++|.+|.++|++++|+++|+++++++|++.    
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   80 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK   80 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence            35789999999999999999999999998776         55679999999999999999999999999988654    


Q ss_pred             ---HHHHHHHHHHh
Q psy8498          78 ---STFCCIVVKEG   88 (90)
Q Consensus        78 ---~~~~~l~~~~~   88 (90)
                         .++.++|.++.
T Consensus        81 ~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           81 LIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence               35667776654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=2e-15  Score=81.89  Aligned_cols=78  Identities=12%  Similarity=0.029  Sum_probs=70.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|..+...|+|++|+.+|++++++.|..         ..++.++|.++.++|++++|+.+|+++++++|.++.++..
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR   77 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            5688999999999999999999999998776         4566999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        78 lg~~~~~   84 (126)
T 3upv_A           78 KATAQIA   84 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.65  E-value=2.3e-15  Score=84.53  Aligned_cols=78  Identities=13%  Similarity=0.014  Sum_probs=70.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++++++.|..         +..++++|.++..+|++++|+.+|++++.++|+++.++++
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   94 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH   94 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            5678999999999999999999999998776         4455999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        95 lg~~~~~  101 (148)
T 2vgx_A           95 AAECLLQ  101 (148)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.64  E-value=3.8e-15  Score=85.04  Aligned_cols=88  Identities=15%  Similarity=-0.005  Sum_probs=73.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc---chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI---IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-------   72 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------   72 (90)
                      +.+.|..+...|+|++|+.+|++|+++.|......   .....+.++.++|.++.++|++++|+.+|++++++       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            56889999999999999999999999999842210   01111236799999999999999999999999999       


Q ss_pred             CCCChHHH----HHHHHHHhcC
Q psy8498          73 APMKASTF----CCIVVKEGVL   90 (90)
Q Consensus        73 ~~~~~~~~----~~l~~~~~~~   90 (90)
                      +|+++.+|    ++.|.++..|
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~l  115 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGL  115 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHhHHHHHHHC
Confidence            99999999    9999988643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.64  E-value=6.2e-15  Score=75.40  Aligned_cols=77  Identities=23%  Similarity=0.205  Sum_probs=70.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++.++|.++...|++++|+.+++++++++|.++.++.+
T Consensus        12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            5678999999999999999999999987655         4456999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus        83 l~~~~~   88 (91)
T 1na3_A           83 LGNAKQ   88 (91)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.63  E-value=4.7e-15  Score=78.26  Aligned_cols=78  Identities=18%  Similarity=0.148  Sum_probs=69.9

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-----   76 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----   76 (90)
                      .+.++|.++...|++++|+.+|++++++.|..         +.++.++|.++..+|++++|+.+|+++++++|++     
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence            35689999999999999999999999997765         4566999999999999999999999999999998     


Q ss_pred             -hHHHHHHHHHHh
Q psy8498          77 -ASTFCCIVVKEG   88 (90)
Q Consensus        77 -~~~~~~l~~~~~   88 (90)
                       ..++..+|.++.
T Consensus        77 ~~~~~~~~~~~~~   89 (111)
T 2l6j_A           77 RSKLQYRLELAQG   89 (111)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence             778888887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.63  E-value=9.9e-15  Score=82.29  Aligned_cols=87  Identities=16%  Similarity=0.071  Sum_probs=72.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC--Ccc-------hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG--EII-------ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      +.+.|..+...|+|++|+.+|++++++.+....  .+.       ......++.++|.++.++|++++|+.++++++.++
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence            568899999999999999999999999655311  000       12224577999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhc
Q psy8498          74 PMKASTFCCIVVKEGV   89 (90)
Q Consensus        74 ~~~~~~~~~l~~~~~~   89 (90)
                      |.++.+++.+|.++..
T Consensus        94 p~~~~a~~~~g~~~~~  109 (162)
T 3rkv_A           94 ETNEKALFRRAKARIA  109 (162)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHH
Confidence            9999999999998864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.63  E-value=5.2e-15  Score=82.09  Aligned_cols=78  Identities=13%  Similarity=0.011  Sum_probs=70.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         +..+..+|.++..+|++++|+.+|++++.++|.++.+++.
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   91 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYD---------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH   91 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            4578999999999999999999999988766         4455999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        92 lg~~~~~   98 (142)
T 2xcb_A           92 AAECHLQ   98 (142)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.63  E-value=5.9e-15  Score=83.35  Aligned_cols=78  Identities=19%  Similarity=0.094  Sum_probs=65.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|+|++|+.+|++++++.|..         ..++.++|.++..+|++++|+.+|+++++++|.++.+++.
T Consensus        14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A           14 LKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5678888999999999999999999887765         4556888999999999999999999999998888888888


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        85 lg~~~~~   91 (164)
T 3sz7_A           85 LGLARFD   91 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.62  E-value=2.7e-15  Score=101.94  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=57.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ++.|+|.++.++|++++|+.+|++|+++.|+.         ..+++++|.++.++|++++|+.+|+++++++|+++.++.
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~   81 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEF---------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS   81 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            46778888888888888888888888877665         444577777777777777777777777777777777777


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      ++|.++.
T Consensus        82 nLg~~l~   88 (723)
T 4gyw_A           82 NMGNTLK   88 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.62  E-value=1.1e-14  Score=79.17  Aligned_cols=77  Identities=18%  Similarity=0.091  Sum_probs=71.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..|+++++..|..         ...+..+|.++...|++++|+..|+++++++|+++.++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~   90 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER---------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   90 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4678999999999999999999999998877         4455999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus        91 la~~~~   96 (121)
T 1hxi_A           91 LAVSHT   96 (121)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.61  E-value=8.9e-15  Score=85.77  Aligned_cols=75  Identities=15%  Similarity=0.057  Sum_probs=70.0

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ++|.++...|++++|+.+|++++++.|+.         ..++.++|.++..+|++++|+.+|+++++++|+++.++.++|
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg  129 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNN---------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG  129 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            39999999999999999999999998877         556699999999999999999999999999999999999999


Q ss_pred             HHHh
Q psy8498          85 VKEG   88 (90)
Q Consensus        85 ~~~~   88 (90)
                      .++.
T Consensus       130 ~~~~  133 (208)
T 3urz_A          130 NYYY  133 (208)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.58  E-value=3.3e-14  Score=77.53  Aligned_cols=78  Identities=15%  Similarity=0.095  Sum_probs=71.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++.++|.++..+|++++|+.++++++.++|.++.++..
T Consensus        12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B           12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            5688999999999999999999999998765         4566999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        83 l~~~~~~   89 (137)
T 3q49_B           83 LGQCQLE   89 (137)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.57  E-value=2e-14  Score=97.65  Aligned_cols=77  Identities=14%  Similarity=0.166  Sum_probs=47.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|+|.++..+|++++|+.+|++++++.|+.         +.+++++|.++.++|++++|+++|+++++++|+++.++.+
T Consensus        46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~  116 (723)
T 4gyw_A           46 HSNLASVLQQQGKLQEALMHYKEAIRISPTF---------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN  116 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4566677777777777777777777666554         3344556666666666666666666666666655555555


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       117 Lg~~~~  122 (723)
T 4gyw_A          117 LASIHK  122 (723)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.57  E-value=3.2e-15  Score=83.94  Aligned_cols=76  Identities=7%  Similarity=-0.069  Sum_probs=65.8

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      +||.++...|++++|+..+++++...|+.         +..++.+|.+|.++|++++|+++|+++++++|+++.++..+|
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~---------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   72 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQK---------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLG   72 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHH---------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            68999999999999999999999998877         334489999999999999999999999999999999999999


Q ss_pred             HHHhc
Q psy8498          85 VKEGV   89 (90)
Q Consensus        85 ~~~~~   89 (90)
                      .++..
T Consensus        73 ~~~~~   77 (150)
T 4ga2_A           73 LLYEL   77 (150)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.56  E-value=1.6e-13  Score=75.13  Aligned_cols=80  Identities=8%  Similarity=0.015  Sum_probs=67.2

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.|+|.+|..+|+|++|+..|++++++.|.....  ......++.++|.++..+|++++|+++|++++...| ++....
T Consensus        44 ~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~  120 (127)
T 4gcn_A           44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD--YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK  120 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred             HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence            36789999999999999999999999999987544  233356789999999999999999999999999987 455554


Q ss_pred             HHH
Q psy8498          82 CIV   84 (90)
Q Consensus        82 ~l~   84 (90)
                      .+.
T Consensus       121 ~l~  123 (127)
T 4gcn_A          121 KVK  123 (127)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.56  E-value=1.3e-13  Score=73.34  Aligned_cols=83  Identities=14%  Similarity=0.042  Sum_probs=70.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      ...||..+...++|..|+.+|++|++..+.....  ....+.++.++|.++.++|+++.|+.+++++++++|.+..+..+
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            4579999999999999999999999987655321  22345678999999999999999999999999999999999888


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      ++...
T Consensus        86 ~~~~~   90 (104)
T 2v5f_A           86 LKYFE   90 (104)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.55  E-value=8.9e-14  Score=72.89  Aligned_cols=79  Identities=14%  Similarity=0.074  Sum_probs=71.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC--ChHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--KAST   79 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~   79 (90)
                      .+.++|.++...|++++|+.+|+++++..|..         ..++.++|.++..+|++++|+.+++++++++|.  ++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   78 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV   78 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence            45689999999999999999999999987654         445699999999999999999999999999999  9999


Q ss_pred             HHHHHHHHhc
Q psy8498          80 FCCIVVKEGV   89 (90)
Q Consensus        80 ~~~l~~~~~~   89 (90)
                      +..+|.++..
T Consensus        79 ~~~l~~~~~~   88 (112)
T 2kck_A           79 WAAKADALRY   88 (112)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=5.9e-14  Score=75.99  Aligned_cols=79  Identities=15%  Similarity=0.009  Sum_probs=70.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC------CC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PM   75 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~   75 (90)
                      .+.++|.++...|++++|+..|++++++.|..         ...+.++|.++..+|++++|+.+|+++++++      |.
T Consensus        40 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~  110 (126)
T 3upv_A           40 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS  110 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchh
Confidence            35789999999999999999999999998766         5566999999999999999999999999999      88


Q ss_pred             ChHHHHHHHHHHhc
Q psy8498          76 KASTFCCIVVKEGV   89 (90)
Q Consensus        76 ~~~~~~~l~~~~~~   89 (90)
                      +..+...++.+...
T Consensus       111 ~~~~~~~l~~~~~~  124 (126)
T 3upv_A          111 AREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888877653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.54  E-value=5.5e-14  Score=79.19  Aligned_cols=77  Identities=19%  Similarity=-0.006  Sum_probs=68.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh-HHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA-STF   80 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~   80 (90)
                      .+.|+|.+|...|+|++|+..+++++++.|..         +..++++|.++..+|++++|+.+|++++.++|+++ ...
T Consensus        65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  135 (162)
T 3rkv_A           65 LYANMSQCYLNIGDLHEAEETSSEVLKREETN---------EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA  135 (162)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc---------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH
Confidence            36789999999999999999999999997766         56679999999999999999999999999999988 556


Q ss_pred             HHHHHHH
Q psy8498          81 CCIVVKE   87 (90)
Q Consensus        81 ~~l~~~~   87 (90)
                      ..++.+.
T Consensus       136 ~~l~~~~  142 (162)
T 3rkv_A          136 REMKIVT  142 (162)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.54  E-value=4.9e-14  Score=79.54  Aligned_cols=77  Identities=14%  Similarity=-0.027  Sum_probs=68.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.++...|++++|+.+|++++++.|..         ...++++|.++..+|++++|+.+|+++++++|+++.++.
T Consensus        47 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  117 (164)
T 3sz7_A           47 YLSNRAAAYSASGQHEKAAEDAELATVVDPKY---------SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM  117 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence            35789999999999999999999999998776         556699999999999999999999999999999988777


Q ss_pred             HHHHHH
Q psy8498          82 CIVVKE   87 (90)
Q Consensus        82 ~l~~~~   87 (90)
                      ..+...
T Consensus       118 ~~~l~~  123 (164)
T 3sz7_A          118 KRGLET  123 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.54  E-value=1.3e-13  Score=78.64  Aligned_cols=78  Identities=13%  Similarity=0.064  Sum_probs=68.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.+|..+|+|++|+.+|++++++.|+.         ..++..+|.++.++|++++|+..+++++...|.++.++.
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   77 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY   77 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence            36789999999999999999999999998876         455688999999999999999999999999888888888


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      .+|.++.
T Consensus        78 ~~~~~~~   84 (184)
T 3vtx_A           78 ILGSANF   84 (184)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.54  E-value=2.1e-13  Score=71.01  Aligned_cols=71  Identities=18%  Similarity=0.088  Sum_probs=64.1

Q ss_pred             CchhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHH-HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498           1 MDLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEP-LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         1 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      |...+.|.++...|++++|+..|+++++..|..         .. .++++|.++..+|++++|+.+|+++++++|+++.+
T Consensus         1 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   71 (99)
T 2kc7_A            1 MDQLKTIKELINQGDIENALQALEEFLQTEPVG---------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL   71 (99)
T ss_dssp             CCTHHHHHHHHHHTCHHHHHHHHHHHHHHCSST---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred             CcHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            345688999999999999999999999987765         44 66999999999999999999999999999999888


Q ss_pred             H
Q psy8498          80 F   80 (90)
Q Consensus        80 ~   80 (90)
                      +
T Consensus        72 ~   72 (99)
T 2kc7_A           72 Q   72 (99)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.53  E-value=1.7e-14  Score=82.37  Aligned_cols=77  Identities=12%  Similarity=-0.019  Sum_probs=64.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHH-------HHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSK-------VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      .+.|+|.++...|+|++|+.+|.+++++       .|+.     ...|...+++.|.++..+|++++|+.+|+++++++|
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~-----~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE-----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch-----HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999999999       5544     333333449999999999999999999999999999


Q ss_pred             CChHHHHHH
Q psy8498          75 MKASTFCCI   83 (90)
Q Consensus        75 ~~~~~~~~l   83 (90)
                      ++......+
T Consensus       134 ~d~~~~~~~  142 (159)
T 2hr2_A          134 ERKGETPGK  142 (159)
T ss_dssp             HCCSCCTTH
T ss_pred             CcHHHHHHH
Confidence            765554433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.52  E-value=1.2e-13  Score=81.41  Aligned_cols=78  Identities=17%  Similarity=-0.072  Sum_probs=68.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-----------cCHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-----------KKYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~   71 (90)
                      +.++|.++...|++++|+..|++++++.|+.         ...+.++|.++..+           |++++|+..|+++++
T Consensus        42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  112 (217)
T 2pl2_A           42 LYWLARTQLKLGLVNPALENGKTLVARTPRY---------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER  112 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence            5678888999999999999999999887766         45569999999999           999999999999999


Q ss_pred             hCCCChHHHHHHHHHHhc
Q psy8498          72 VAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        72 ~~~~~~~~~~~l~~~~~~   89 (90)
                      ++|+++.++..+|.++..
T Consensus       113 ~~P~~~~~~~~lg~~~~~  130 (217)
T 2pl2_A          113 VNPRYAPLHLQRGLVYAL  130 (217)
T ss_dssp             HCTTCHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHH
Confidence            999999999999988753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.51  E-value=3.3e-13  Score=79.03  Aligned_cols=77  Identities=14%  Similarity=0.080  Sum_probs=69.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHh----------------HHHHHHHhcCHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN----------------LGHVNRKLKKYEEALEFH   66 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------lg~~~~~~g~~~~A~~~~   66 (90)
                      +...|..+...|++++|+.+|++++++.|+.         +..+..                +|.++.++|++++|+.+|
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~   77 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDR---------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY   77 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH---------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4567999999999999999999999999987         333455                999999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHh
Q psy8498          67 KQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        67 ~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      +++++++|+++.++..+|.++.
T Consensus        78 ~~al~~~p~~~~~~~~lg~~~~   99 (208)
T 3urz_A           78 KELLQKAPNNVDCLEACAEMQV   99 (208)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHH
Confidence            9999999999999999999875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.51  E-value=1.8e-13  Score=73.58  Aligned_cols=71  Identities=13%  Similarity=0.086  Sum_probs=62.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.++...|++++|+.+|++++++.|+.         ..++.++|.++..+|++++|+.++++++...|.++....
T Consensus        29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---------QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            35789999999999999999999999998876         556699999999999999999999999999998876643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.51  E-value=4.9e-14  Score=79.67  Aligned_cols=67  Identities=12%  Similarity=0.020  Sum_probs=61.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      .+.++|.++...|+|++|+.+|++++++.|+.         +..++++|.++..+|++++|+.+|++++++.|+.+
T Consensus        72 ~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           72 YIMGLAAIYQIKEQFQQAADLYAVAFALGKND---------YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            36789999999999999999999999999876         44559999999999999999999999999998654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.51  E-value=1.3e-13  Score=86.16  Aligned_cols=78  Identities=17%  Similarity=0.114  Sum_probs=72.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.|+|.++...|++++|+.+|++++++.|..         ...++++|.++..+|++++|+.+|+++++++|.+..++.
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~  268 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT  268 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            36789999999999999999999999998776         556799999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      .++.++.
T Consensus       269 ~l~~~~~  275 (336)
T 1p5q_A          269 QLAVCQQ  275 (336)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.51  E-value=1.2e-13  Score=77.50  Aligned_cols=70  Identities=7%  Similarity=-0.143  Sum_probs=62.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      +.++|.++...|++++|+.+|++++++.|+.         +..++++|.++..+|++++|+.+|+++++++|.++....
T Consensus        58 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---------PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            5689999999999999999999999998876         445699999999999999999999999999988766543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.51  E-value=4.4e-13  Score=70.66  Aligned_cols=77  Identities=16%  Similarity=0.075  Sum_probs=48.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ...+..+|.++...|++++|+.++++++..+|.++.++..
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR   77 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3456666677777777777777776665543         3334666666666666666666666666666666666666


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus        78 ~a~~~~   83 (118)
T 1elw_A           78 KAAALE   83 (118)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.50  E-value=1.3e-13  Score=81.20  Aligned_cols=77  Identities=19%  Similarity=0.050  Sum_probs=71.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..|+++++..|+.         +..+.++|.++..+|++++|+.+|+++++++|+++.++.+
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~   78 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKENPQD---------PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV   78 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            5688999999999999999999999998876         5566999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus        79 lg~~~~   84 (217)
T 2pl2_A           79 LSEAYV   84 (217)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.50  E-value=5.2e-13  Score=72.06  Aligned_cols=82  Identities=16%  Similarity=0.050  Sum_probs=64.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC---hH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---AS   78 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~   78 (90)
                      .+.++|.++...|++++|+..|+++++..|...      ..+..+..+|.++.+.|++++|+.+|++++...|++   +.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~   77 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG   77 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH
Confidence            356788888889999999999999888876541      112455888889999999999999999988888887   77


Q ss_pred             HHHHHHHHHhc
Q psy8498          79 TFCCIVVKEGV   89 (90)
Q Consensus        79 ~~~~l~~~~~~   89 (90)
                      +++.+|.++..
T Consensus        78 ~~~~la~~~~~   88 (129)
T 2xev_A           78 GLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            78888887653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.49  E-value=1.2e-13  Score=76.50  Aligned_cols=75  Identities=8%  Similarity=-0.090  Sum_probs=64.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++++++.|..         +..+.++|.++..+|++++|+.+|++++.++|.++.....
T Consensus        55 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  125 (142)
T 2xcb_A           55 FLGLGACRQSLGLYEQALQSYSYGALMDINE---------PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL  125 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence            5688999999999999999999999998876         4455999999999999999999999999999987765544


Q ss_pred             HHHH
Q psy8498          83 IVVK   86 (90)
Q Consensus        83 l~~~   86 (90)
                      ...+
T Consensus       126 ~~~~  129 (142)
T 2xcb_A          126 AARA  129 (142)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.49  E-value=1e-13  Score=79.07  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=64.6

Q ss_pred             chhhHHHHHHhhCCH----------HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-----------CHH
Q psy8498           2 DLDNVELSSDKSFSY----------TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----------KYE   60 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~   60 (90)
                      .+.++|.++...+++          ++|+..|++|+++.|+.         ..+++++|.+|..+|           +++
T Consensus        38 a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~---------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~  108 (158)
T 1zu2_A           38 NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---------DEAVWCIGNAYTSFAFLTPDETEAKHNFD  108 (158)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc---------HHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence            367899999998875          59999999999999887         555699999999985           899


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498          61 EALEFHKQALVVAPMKASTFCCIVV   85 (90)
Q Consensus        61 ~A~~~~~~al~~~~~~~~~~~~l~~   85 (90)
                      +|+.+|++|++++|++......+..
T Consensus       109 eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A          109 LATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999999998776665544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.49  E-value=3.5e-13  Score=82.26  Aligned_cols=86  Identities=10%  Similarity=-0.046  Sum_probs=72.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-----   76 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----   76 (90)
                      ++.++|.+|...|+|++|+.+|+++++..+.....  ......+++++|.+|.++|++++|+.++++++++.+..     
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~  234 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            36899999999999999999999999988876332  34445678999999999999999999999999886532     


Q ss_pred             -hHHHHHHHHHHhc
Q psy8498          77 -ASTFCCIVVKEGV   89 (90)
Q Consensus        77 -~~~~~~l~~~~~~   89 (90)
                       +.++.++|.++..
T Consensus       235 ~~~~~~~lg~~~~~  248 (293)
T 3u3w_A          235 IGQLYYQRGECLRK  248 (293)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence             6778899988754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.49  E-value=3.4e-13  Score=78.11  Aligned_cols=77  Identities=21%  Similarity=0.052  Sum_probs=70.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ..+++++|.++..+|++++|+.+|+++++++|.++.++..
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  161 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS  161 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            5689999999999999999999999997765         5567999999999999999999999999999999999998


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++.++.
T Consensus       162 l~~~~~  167 (198)
T 2fbn_A          162 YELCVN  167 (198)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.48  E-value=4.2e-13  Score=72.27  Aligned_cols=77  Identities=12%  Similarity=0.011  Sum_probs=48.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++.++|.++...|++++|+.++++++.++|.+..++..
T Consensus        53 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  123 (133)
T 2lni_A           53 YSNRAACYTKLLEFQLALKDCEECIQLEPTF---------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG  123 (133)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHH
Confidence            3455666666666666666666666654433         3344666777777777777777777777776666666666


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++.++.
T Consensus       124 l~~~~~  129 (133)
T 2lni_A          124 YQRCMM  129 (133)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.48  E-value=7.3e-13  Score=73.83  Aligned_cols=77  Identities=13%  Similarity=0.009  Sum_probs=48.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++.++|.++...|++++|+.++++++.++|.++.++..
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELNPSN---------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3456666777777777777777777665543         3344666666666666666666666666666666666666


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus        87 ~a~~~~   92 (166)
T 1a17_A           87 RAASNM   92 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.48  E-value=2e-13  Score=73.54  Aligned_cols=79  Identities=15%  Similarity=0.122  Sum_probs=71.2

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ++.++|.++...|++++|+.+|+++++..|..         ..++.++|.++...|++++|+.+++++++++|.++.++.
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   88 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT   88 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence            36789999999999999999999999987655         455699999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q psy8498          82 CIVVKEGV   89 (90)
Q Consensus        82 ~l~~~~~~   89 (90)
                      .+|.++..
T Consensus        89 ~la~~~~~   96 (133)
T 2lni_A           89 RKAAALEA   96 (133)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.48  E-value=6.3e-13  Score=71.11  Aligned_cols=76  Identities=20%  Similarity=0.116  Sum_probs=43.7

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .++|.++...|++++|+.+++++++..|..         ..++..+|.++...|++++|+.++++++.++|.++.++..+
T Consensus        50 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (131)
T 2vyi_A           50 CNRAAAYSKLGNYAGAVQDCERAICIDPAY---------SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL  120 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhcCccC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHH
Confidence            345555555555555555555555554332         23346666666666666666666666666666666666666


Q ss_pred             HHHHh
Q psy8498          84 VVKEG   88 (90)
Q Consensus        84 ~~~~~   88 (90)
                      |.++.
T Consensus       121 ~~~~~  125 (131)
T 2vyi_A          121 KIAEL  125 (131)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.47  E-value=4e-13  Score=70.68  Aligned_cols=64  Identities=17%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ..++.++|.++..+|++++|++.|++++++.|.
T Consensus        10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A           10 RYALAQEHLKHDNASRALALFEELVETDPDY---------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            5689999999999999999999999998876         345599999999999999999999999998764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.47  E-value=5.4e-13  Score=78.40  Aligned_cols=78  Identities=22%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHH-hhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVK-QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      +.+.|.++...|+|++|+.+|++++++.| ..         ...+.++|.++..+|++++|+.+|++++.++|.++.++.
T Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   80 (228)
T 4i17_A           10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---------SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYI   80 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHH
Confidence            56789999999999999999999999876 33         234477899999999999999999999999888888888


Q ss_pred             HHHHHHhc
Q psy8498          82 CIVVKEGV   89 (90)
Q Consensus        82 ~l~~~~~~   89 (90)
                      .+|.++..
T Consensus        81 ~l~~~~~~   88 (228)
T 4i17_A           81 GKSAAYRD   88 (228)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.47  E-value=3.9e-13  Score=84.00  Aligned_cols=87  Identities=14%  Similarity=-0.025  Sum_probs=73.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      +.++|.++...|+|++|+.+|++++++.|......      .......++.++|.++.++|++++|+.+|+++++++|.+
T Consensus       150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~  229 (336)
T 1p5q_A          150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN  229 (336)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            56889999999999999999999999988763110      011123567999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhc
Q psy8498          77 ASTFCCIVVKEGV   89 (90)
Q Consensus        77 ~~~~~~l~~~~~~   89 (90)
                      +.+++++|.++..
T Consensus       230 ~~a~~~lg~~~~~  242 (336)
T 1p5q_A          230 EKGLSRRGEAHLA  242 (336)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.46  E-value=1.1e-13  Score=88.11  Aligned_cols=76  Identities=8%  Similarity=-0.064  Sum_probs=42.6

Q ss_pred             hhhHHHHHHhhCC-HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           3 LDNVELSSDKSFS-YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         3 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      +.++|.++...|+ +++|+.+|++++++.|+.         ..+++++|.++..+|++++|+.+|+++++++|++..++.
T Consensus       134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~---------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~  204 (382)
T 2h6f_A          134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ  204 (382)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHH
Confidence            4556666666664 666666666666665554         223355555555555555555555555555555555555


Q ss_pred             HHHHHH
Q psy8498          82 CIVVKE   87 (90)
Q Consensus        82 ~l~~~~   87 (90)
                      ++|.++
T Consensus       205 ~lg~~~  210 (382)
T 2h6f_A          205 HRQWVI  210 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.46  E-value=1.3e-12  Score=68.82  Aligned_cols=76  Identities=13%  Similarity=-0.023  Sum_probs=68.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+++++++..|..         ...+.++|.++...|++++|.++++++++++|.++.++..
T Consensus        41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  111 (118)
T 1elw_A           41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG  111 (118)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            5678999999999999999999999987654         4556999999999999999999999999999999999988


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      ++.+.
T Consensus       112 l~~~~  116 (118)
T 1elw_A          112 LQNME  116 (118)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.46  E-value=8.5e-13  Score=76.58  Aligned_cols=77  Identities=19%  Similarity=0.146  Sum_probs=63.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh-----
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA-----   77 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----   77 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ...+.++|.++..+|++++|+.+|++++++.|.+.     
T Consensus        40 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  110 (213)
T 1hh8_A           40 CFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK  110 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH
Confidence            5678888999999999999999998886654         44568899999999999999999999998877655     


Q ss_pred             -----------HHHHHHHHHHh
Q psy8498          78 -----------STFCCIVVKEG   88 (90)
Q Consensus        78 -----------~~~~~l~~~~~   88 (90)
                                 .++.++|.++.
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~~  132 (213)
T 1hh8_A          111 ILGLQFKLFACEVLYNIAFMYA  132 (213)
T ss_dssp             GGTBCCEEEHHHHHHHHHHHHH
T ss_pred             HhccccCccchHHHHHHHHHHH
Confidence                       77888887764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.46  E-value=4.2e-13  Score=78.87  Aligned_cols=84  Identities=14%  Similarity=-0.009  Sum_probs=69.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC--ChHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--KASTF   80 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~   80 (90)
                      +.++|.++...|++++|+.+|++++++.|....  .......++.++|.++..+|++++|+++|+++++++|+  ++.++
T Consensus        79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  156 (228)
T 4i17_A           79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT--IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL  156 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence            567889999999999999999999988776510  01112356799999999999999999999999999999  89999


Q ss_pred             HHHHHHHh
Q psy8498          81 CCIVVKEG   88 (90)
Q Consensus        81 ~~l~~~~~   88 (90)
                      .++|.++.
T Consensus       157 ~~l~~~~~  164 (228)
T 4i17_A          157 YSLGVLFY  164 (228)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998874

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.46  E-value=1.2e-12  Score=74.56  Aligned_cols=42  Identities=17%  Similarity=0.227  Sum_probs=23.2

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      ..+|.++.++|++++|+++|+++++++|.++.++.++|.++.
T Consensus       111 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  152 (184)
T 3vtx_A          111 YKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            455555555555555555555555555555555555555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.46  E-value=2.2e-13  Score=86.76  Aligned_cols=75  Identities=11%  Similarity=0.006  Sum_probs=38.2

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      .++|.++...|++++|+..|++++++.|..         ..+++++|.++..+|+ +++|+.+|+++++++|++..++.+
T Consensus       101 ~~lg~~~~~~g~~~~Al~~~~~al~l~P~~---------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~  171 (382)
T 2h6f_A          101 DYFRAVLQRDERSERAFKLTRDAIELNAAN---------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  171 (382)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCccC---------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            344555555555555555555555554444         2233555555555553 555555555555555555555555


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|.++
T Consensus       172 ~g~~~  176 (382)
T 2h6f_A          172 RRVLV  176 (382)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.46  E-value=2e-12  Score=69.14  Aligned_cols=78  Identities=14%  Similarity=0.129  Sum_probs=70.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|.++...|++++|+.+|+++++..|..         ..++..+|.++...|++++|+.++++++...|.++.++..
T Consensus        15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A           15 LKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            5678999999999999999999999987655         4456999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        86 ~~~~~~~   92 (131)
T 2vyi_A           86 MGLALSS   92 (131)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.45  E-value=7e-13  Score=80.98  Aligned_cols=78  Identities=15%  Similarity=0.095  Sum_probs=71.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|+|++|+.+|+++++..|..         ...+.++|.++.++|++++|+.+++++++++|.++.+++.
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (281)
T 2c2l_A            7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   77 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5678999999999999999999999997765         5566999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        78 lg~~~~~   84 (281)
T 2c2l_A           78 LGQCQLE   84 (281)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.45  E-value=7e-13  Score=76.77  Aligned_cols=87  Identities=15%  Similarity=-0.017  Sum_probs=72.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcch-------hhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIA-------DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +.++|..+...|+|++|+.+|++++++.|........       .....++.++|.++..+|++++|+.+++++++++|.
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  120 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN  120 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            5678999999999999999999999987765321110       001246799999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhc
Q psy8498          76 KASTFCCIVVKEGV   89 (90)
Q Consensus        76 ~~~~~~~l~~~~~~   89 (90)
                      ++.+++.+|.++..
T Consensus       121 ~~~~~~~lg~~~~~  134 (198)
T 2fbn_A          121 NVKALYKLGVANMY  134 (198)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999998753

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.45  E-value=8.7e-13  Score=80.69  Aligned_cols=85  Identities=11%  Similarity=0.003  Sum_probs=70.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-cCHHHHHHHHHHHHhhCCCC----
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-KKYEEALEFHKQALVVAPMK----   76 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~----   76 (90)
                      ++.++|.+|...|++++|+.+|++++++.+..+..   ...+.++.++|.+|... |++++|+.+|++|+++.|.+    
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~  155 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence            46789999999999999999999999999887543   22245679999999996 99999999999999998743    


Q ss_pred             --hHHHHHHHHHHhc
Q psy8498          77 --ASTFCCIVVKEGV   89 (90)
Q Consensus        77 --~~~~~~l~~~~~~   89 (90)
                        ..++.++|.++..
T Consensus       156 ~~~~~~~~lg~~~~~  170 (292)
T 1qqe_A          156 LSNKCFIKCADLKAL  170 (292)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence              4567788887753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.45  E-value=2.3e-12  Score=68.37  Aligned_cols=41  Identities=29%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      ..+|.++...|++++|+.+++++++++|.++.++..+|.++
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45555555555555555555555555555555555555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.45  E-value=2.3e-12  Score=68.39  Aligned_cols=78  Identities=23%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++..+|.++...|++++|+.++++++...|.++.++..
T Consensus        12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            5678999999999999999999999986654         4456999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        83 la~~~~~   89 (125)
T 1na0_A           83 LGNAYYK   89 (125)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.44  E-value=7.7e-13  Score=70.87  Aligned_cols=78  Identities=14%  Similarity=0.052  Sum_probs=68.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------   76 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++.++|.++...|++++|+.++++++.+.|.+      
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPTN---------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence            5688999999999999999999999987655         4566999999999999999999999999998866      


Q ss_pred             -hHHHHHHHHHHhc
Q psy8498          77 -ASTFCCIVVKEGV   89 (90)
Q Consensus        77 -~~~~~~l~~~~~~   89 (90)
                       +.++..+|.++..
T Consensus        78 ~~~~~~~la~~~~~   91 (131)
T 1elr_A           78 IAKAYARIGNSYFK   91 (131)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence             7788888887753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.44  E-value=4.5e-13  Score=86.71  Aligned_cols=78  Identities=22%  Similarity=0.170  Sum_probs=68.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.|+|.+|...|+|++|+.+|++++++.|..         ...++++|.++..+|++++|+.+|+++++++|++..++.
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~  389 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN---------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL  389 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            35689999999999999999999999998876         566799999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      .++.++.
T Consensus       390 ~l~~~~~  396 (457)
T 1kt0_A          390 QISMCQK  396 (457)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988775

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.44  E-value=1.9e-12  Score=82.04  Aligned_cols=87  Identities=16%  Similarity=0.129  Sum_probs=72.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC-------CcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG-------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +.++|..+...|+|++|+.+|++++++.+....       .........++.++|.++.++|++++|+.+++++++++|.
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            568899999999999999999999997655310       0012223557799999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhc
Q psy8498          76 KASTFCCIVVKEGV   89 (90)
Q Consensus        76 ~~~~~~~l~~~~~~   89 (90)
                      ++.+++.+|.++..
T Consensus       306 ~~~a~~~lg~~~~~  319 (370)
T 1ihg_A          306 NTKALYRRAQGWQG  319 (370)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999998864

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.44  E-value=2.4e-13  Score=73.05  Aligned_cols=68  Identities=16%  Similarity=0.051  Sum_probs=58.2

Q ss_pred             hhCCHHHHHHHHHHHHHH---HHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          12 KSFSYTVAENCFMEALSK---VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        12 ~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      .+|++++|+.+|++++++   .|..         ..++.++|.++..+|++++|+.+|+++++++|+++.++..+|.++.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   72 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDL---------AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY   72 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            468999999999999998   5665         5567999999999999999999999999999999999999999875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.43  E-value=2.7e-12  Score=78.48  Aligned_cols=84  Identities=11%  Similarity=-0.064  Sum_probs=69.9

Q ss_pred             chhhHHHHHHhh-CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH--
Q psy8498           2 DLDNVELSSDKS-FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS--   78 (90)
Q Consensus         2 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--   78 (90)
                      .+.++|.+|... |++++|+.+|++++++.|..+..   .....++.++|.++.++|++++|+.+|++++.+.|.++.  
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            367899999996 99999999999999999976432   122456799999999999999999999999999986653  


Q ss_pred             -----HHHHHHHHHh
Q psy8498          79 -----TFCCIVVKEG   88 (90)
Q Consensus        79 -----~~~~l~~~~~   88 (90)
                           ++.++|.++.
T Consensus       196 ~~~~~~~~~lg~~~~  210 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQL  210 (292)
T ss_dssp             GGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence                 4677887765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.43  E-value=1.1e-12  Score=84.87  Aligned_cols=87  Identities=16%  Similarity=0.029  Sum_probs=73.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      +.++|.++...|+|++|+.+|++|+++.|......      .......+++++|.++.++|++++|+.+|+++++++|++
T Consensus       271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~  350 (457)
T 1kt0_A          271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN  350 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence            56889999999999999999999999988752100      011224567999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhc
Q psy8498          77 ASTFCCIVVKEGV   89 (90)
Q Consensus        77 ~~~~~~l~~~~~~   89 (90)
                      +.+++++|.++..
T Consensus       351 ~~a~~~~g~a~~~  363 (457)
T 1kt0_A          351 EKGLYRRGEAQLL  363 (457)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998864

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.42  E-value=1.8e-12  Score=77.27  Aligned_cols=78  Identities=18%  Similarity=0.106  Sum_probs=66.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++..+|.++...|++++|+.+|+++++++|.++.++..
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  116 (275)
T 1xnf_A           46 LYERGVLYDSLGLRALARNDFSQALAIRPDM---------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  116 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHH
Confidence            5678999999999999999999999986654         4456889999999999999999999999999988888888


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       117 la~~~~~  123 (275)
T 1xnf_A          117 RGIALYY  123 (275)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.4e-12  Score=69.86  Aligned_cols=74  Identities=16%  Similarity=0.029  Sum_probs=38.2

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .++|.++...|++++|+.+|+++++..|..         ...+.++|.++..+|++++|+.+|++++.++|++..++..+
T Consensus        69 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  139 (148)
T 2dba_A           69 RNRAACHLKLEDYDKAETEASKAIEKDGGD---------VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL  139 (148)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhhCccC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            344555555555555555555555543332         22335555555555555555555555555555555554444


Q ss_pred             HHH
Q psy8498          84 VVK   86 (90)
Q Consensus        84 ~~~   86 (90)
                      +.+
T Consensus       140 ~~~  142 (148)
T 2dba_A          140 RNI  142 (148)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.42  E-value=6.9e-13  Score=72.04  Aligned_cols=66  Identities=12%  Similarity=-0.008  Sum_probs=55.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      +.++|.++...|++++|+.+|++++++.|+.         ...+.++|.++...|++++|+..++++++++|.++
T Consensus        54 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           54 WRSLGLTQAENEKDGLAIIALNHARMLDPKD---------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            5689999999999999999999999998876         45569999999999999999999999999998764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.41  E-value=2.1e-12  Score=78.85  Aligned_cols=86  Identities=10%  Similarity=-0.046  Sum_probs=70.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC------
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM------   75 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------   75 (90)
                      ++.++|.+|...|++++|+.+|++++++.+..+..  ......+++++|.+|..+|++++|+.++++++.+.+.      
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            46789999999999999999999999988776443  1112357899999999999999999999999988642      


Q ss_pred             ChHHHHHHHHHHhc
Q psy8498          76 KASTFCCIVVKEGV   89 (90)
Q Consensus        76 ~~~~~~~l~~~~~~   89 (90)
                      .+.++.++|.++..
T Consensus       235 ~~~~~~~lg~~y~~  248 (293)
T 2qfc_A          235 IGQLYYQRGECLRK  248 (293)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            26778899988753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.41  E-value=8.9e-12  Score=66.62  Aligned_cols=83  Identities=13%  Similarity=0.113  Sum_probs=69.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|.....  ......++.++|.++...|++++|+++|++++.+.| ++.....
T Consensus        41 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~  117 (131)
T 1elr_A           41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKK  117 (131)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHH
Confidence            5688999999999999999999999999876333  122244679999999999999999999999999998 5777777


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++.+..
T Consensus       118 l~~~~~  123 (131)
T 1elr_A          118 CQQAEK  123 (131)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.41  E-value=4.2e-12  Score=80.99  Aligned_cols=85  Identities=9%  Similarity=-0.002  Sum_probs=69.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC--------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP--------   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------   74 (90)
                      ++++|.++..+|++++|+++|++|+++.+.............++.++|.+|..+|++++|+.++++++++.+        
T Consensus        54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~  133 (472)
T 4g1t_A           54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI  133 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence            567999999999999999999999999887754433333355779999999999999999999999998742        


Q ss_pred             CChHHHHHHHHHH
Q psy8498          75 MKASTFCCIVVKE   87 (90)
Q Consensus        75 ~~~~~~~~l~~~~   87 (90)
                      ..+.++.++|.++
T Consensus       134 ~~~~~~~~~g~~~  146 (472)
T 4g1t_A          134 ESPELDCEEGWTR  146 (472)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            4466677776554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.41  E-value=3e-12  Score=71.33  Aligned_cols=75  Identities=17%  Similarity=0.028  Sum_probs=66.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ...+.++|.++..+|++++|+.+|+++++++|.+..++..
T Consensus        50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  120 (166)
T 1a17_A           50 YGNRSLAYLRTECYGYALGDATRAIELDKKY---------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK  120 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5688999999999999999999999997765         4556999999999999999999999999999998888755


Q ss_pred             HHHH
Q psy8498          83 IVVK   86 (90)
Q Consensus        83 l~~~   86 (90)
                      ++.+
T Consensus       121 ~~~~  124 (166)
T 1a17_A          121 YQEC  124 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.41  E-value=2.7e-12  Score=79.63  Aligned_cols=77  Identities=21%  Similarity=0.105  Sum_probs=67.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ..+++++|.++...|++++|+.+|+++++++|.++.++..
T Consensus       216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  286 (365)
T 4eqf_A          216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPED---------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN  286 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence            5678999999999999999999999987665         4456899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       287 l~~~~~  292 (365)
T 4eqf_A          287 LGISCI  292 (365)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.41  E-value=3.8e-12  Score=79.84  Aligned_cols=85  Identities=19%  Similarity=0.160  Sum_probs=70.9

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----C-CC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----A-PM   75 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~-~~   75 (90)
                      .+.++|.+|...|++++|+.+|++++++.+..++.   .....+++++|.+|..+|++++|+++|++++++     + |.
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP---QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            35788999999999999999999999999887443   333556799999999999999999999999984     5 66


Q ss_pred             ChHHHHHHHHHHhc
Q psy8498          76 KASTFCCIVVKEGV   89 (90)
Q Consensus        76 ~~~~~~~l~~~~~~   89 (90)
                      .+.++.++|.++..
T Consensus       263 ~~~~~~~l~~~~~~  276 (383)
T 3ulq_A          263 LPQAYFLITQIHYK  276 (383)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            67788889888753

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=4.4e-12  Score=74.75  Aligned_cols=78  Identities=12%  Similarity=0.029  Sum_probs=68.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++.++|.++...|++++|+.+++++++++|.++.++..
T Consensus       142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  212 (258)
T 3uq3_A          142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR  212 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            4578999999999999999999999987765         4556889999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       213 l~~~~~~  219 (258)
T 3uq3_A          213 KATAQIA  219 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888753

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.40  E-value=4e-12  Score=72.18  Aligned_cols=77  Identities=10%  Similarity=0.014  Sum_probs=67.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHH-HHHhcCH--HHHHHHHHHHHhhCCCChHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHV-NRKLKKY--EEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~   79 (90)
                      +..+|.++...|++++|+.+|++++++.|..         ...+.++|.+ +...|++  ++|+.+++++++++|.++.+
T Consensus        47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~  117 (177)
T 2e2e_A           47 WALLGEYYLWQNDYSNSLLAYRQALQLRGEN---------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA  117 (177)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHH
Confidence            5678999999999999999999999988765         4455889999 7889998  99999999999999999999


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      +..+|.++.
T Consensus       118 ~~~la~~~~  126 (177)
T 2e2e_A          118 LMLLASDAF  126 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888775

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.39  E-value=1.8e-12  Score=82.16  Aligned_cols=78  Identities=21%  Similarity=0.125  Sum_probs=70.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.|+|.++...|+|++|+.++++++++.|..         ..+++++|.++..+|++++|+.+|+++++++|.+..++.
T Consensus       275 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~  345 (370)
T 1ihg_A          275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA  345 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCchh---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            35789999999999999999999999987755         566799999999999999999999999999999999988


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      .++.++.
T Consensus       346 ~l~~~~~  352 (370)
T 1ihg_A          346 ELLKVKQ  352 (370)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.39  E-value=4.7e-12  Score=79.47  Aligned_cols=84  Identities=14%  Similarity=0.026  Sum_probs=70.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh-----hCCCCh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV-----VAPMKA   77 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~~~~~   77 (90)
                      +.++|.+|...|++++|+++|++++++.+..+..   .....+++++|.++..+|++++|++++++++.     .+|..+
T Consensus       185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  261 (378)
T 3q15_A          185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP  261 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence            5689999999999999999999999998876443   23355679999999999999999999999998     566667


Q ss_pred             HHHHHHHHHHhc
Q psy8498          78 STFCCIVVKEGV   89 (90)
Q Consensus        78 ~~~~~l~~~~~~   89 (90)
                      .++.++|.++..
T Consensus       262 ~~~~~la~~~~~  273 (378)
T 3q15_A          262 KVLFGLSWTLCK  273 (378)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            788888888753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.6e-12  Score=69.78  Aligned_cols=80  Identities=16%  Similarity=0.019  Sum_probs=69.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|..+...|++++|+.+|+++++..|..      .....++.++|.++...|++++|+.+++++++++|.++.++..
T Consensus        31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           31 LRKEGNELFKCGDYGGALAAYTQALGLDATP------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            5678999999999999999999999876542      1124467999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       105 ~a~~~~  110 (148)
T 2dba_A          105 RSQALE  110 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.38  E-value=6.2e-12  Score=78.03  Aligned_cols=78  Identities=13%  Similarity=0.008  Sum_probs=71.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++..+|.++...|++++|+.+|+++++++|.++.++..
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  138 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD---------AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA  138 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            6788999999999999999999999997765         4556999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       139 l~~~~~~  145 (365)
T 4eqf_A          139 LAVSYTN  145 (365)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9988753

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.38  E-value=3.8e-12  Score=67.91  Aligned_cols=64  Identities=13%  Similarity=-0.021  Sum_probs=58.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ...+.++|.++..+|++++|+.+|++++++.|.
T Consensus        22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTY---------SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            5689999999999999999999999997765         445699999999999999999999999999874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.37  E-value=1.8e-12  Score=81.09  Aligned_cols=87  Identities=15%  Similarity=-0.052  Sum_probs=71.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC---Cc-----chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG---EI-----IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      +.++|..+...|+|++|+.+|++++++.|....   ..     .......+++++|.++.++|++++|+.+|+++++++|
T Consensus       182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  261 (338)
T 2if4_A          182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE  261 (338)
T ss_dssp             HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            567899999999999999999999998776510   00     0000113679999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhc
Q psy8498          75 MKASTFCCIVVKEGV   89 (90)
Q Consensus        75 ~~~~~~~~l~~~~~~   89 (90)
                      .++.+++++|.++..
T Consensus       262 ~~~~a~~~lg~a~~~  276 (338)
T 2if4_A          262 KNPKALFRRGKAKAE  276 (338)
T ss_dssp             TCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.37  E-value=7.1e-12  Score=76.15  Aligned_cols=86  Identities=49%  Similarity=0.804  Sum_probs=70.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..+..+.......+..++.++|.++...|++++|+.+++++++++|.++.++..
T Consensus       196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  275 (330)
T 3hym_B          196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSA  275 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHH
Confidence            56789999999999999999999999987764432222234456889999999999999999999999999988888888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       276 la~~~~  281 (330)
T 3hym_B          276 IGYIHS  281 (330)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.37  E-value=1.6e-11  Score=66.10  Aligned_cols=77  Identities=18%  Similarity=0.025  Sum_probs=65.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|....      .+..+..+|.++..+|++++|+.+|++++...|+++.+...
T Consensus        42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a  115 (129)
T 2xev_A           42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK------AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA  115 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence            567899999999999999999999998776521      24456999999999999999999999999999988776554


Q ss_pred             HHH
Q psy8498          83 IVV   85 (90)
Q Consensus        83 l~~   85 (90)
                      ...
T Consensus       116 ~~~  118 (129)
T 2xev_A          116 QER  118 (129)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.36  E-value=3e-12  Score=76.38  Aligned_cols=78  Identities=10%  Similarity=-0.015  Sum_probs=35.7

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .++|.++...|++++|+.+|+++++ .+.. .    .....++..+|.++...|++++|+.+|+++++++|.++.++..+
T Consensus        41 ~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  114 (272)
T 3u4t_A           41 NRRAVCYYELAKYDLAQKDIETYFS-KVNA-T----KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI  114 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-T----TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-h----hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            3445555555555555555555554 2211 0    11122234455555555555555555555555555444444444


Q ss_pred             HHHH
Q psy8498          84 VVKE   87 (90)
Q Consensus        84 ~~~~   87 (90)
                      |.++
T Consensus       115 ~~~~  118 (272)
T 3u4t_A          115 GSYF  118 (272)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.36  E-value=1.3e-12  Score=85.08  Aligned_cols=74  Identities=18%  Similarity=0.028  Sum_probs=39.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .++|.++...|++++|+.+|++++++.|..         ...++++|.++..+|++++|+++|+++++++|+++.++..+
T Consensus        44 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  114 (477)
T 1wao_1           44 GNRSLAYLRTECYGYALGDATRAIELDKKY---------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  114 (477)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            345555555555555555555555554333         33345555555555555555555555555555555555555


Q ss_pred             HHH
Q psy8498          84 VVK   86 (90)
Q Consensus        84 ~~~   86 (90)
                      +.+
T Consensus       115 ~~~  117 (477)
T 1wao_1          115 QEC  117 (477)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=5.9e-12  Score=84.88  Aligned_cols=77  Identities=9%  Similarity=-0.106  Sum_probs=65.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..|+++++..|+.         ...++++|.++..+|++++|+..|+++++++|+++.++.+
T Consensus       436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  506 (681)
T 2pzi_A          436 PLMEVRALLDLGDVAKATRKLDDLAERVGWR---------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA  506 (681)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhccCcch---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            4577888999999999999999999987766         4556889999999999999999999999999988888888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       507 lg~~~~  512 (681)
T 2pzi_A          507 LAATAE  512 (681)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.35  E-value=2.1e-11  Score=65.10  Aligned_cols=76  Identities=24%  Similarity=0.240  Sum_probs=39.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ...+..+|.++...|++++|+.++++++...|.++.++..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   74 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN   74 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHH
Confidence            3455666666666666666666666554332         2223445555555555555555555555555544444444


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|.++
T Consensus        75 l~~~~   79 (136)
T 2fo7_A           75 LGNAY   79 (136)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.35  E-value=5.6e-12  Score=68.55  Aligned_cols=75  Identities=19%  Similarity=0.059  Sum_probs=64.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC-----Ch
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-----KA   77 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~   77 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ...+.++|.++..+|++++|+.+|++++.++|+     +.
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  116 (137)
T 3q49_B           46 YTNRALCYLKMQQPEQALADCRRALELDGQS---------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD  116 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCchh---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHH
Confidence            5789999999999999999999999998765         456699999999999999999999999999886     45


Q ss_pred             HHHHHHHHH
Q psy8498          78 STFCCIVVK   86 (90)
Q Consensus        78 ~~~~~l~~~   86 (90)
                      .....+..+
T Consensus       117 ~~~~~l~~~  125 (137)
T 3q49_B          117 DIPSALRIA  125 (137)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.35  E-value=2.1e-12  Score=73.64  Aligned_cols=71  Identities=18%  Similarity=0.202  Sum_probs=63.6

Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCH----------HHHHHHHHHHHhhCCCChHH
Q psy8498          10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY----------EEALEFHKQALVVAPMKAST   79 (90)
Q Consensus        10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~   79 (90)
                      ..+.+.|++|+..|++++++.|..         +..++++|.++..++++          ++|+..|++|++++|+++.+
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~---------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A   82 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLD---------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEA   82 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHH
Confidence            456788999999999999999987         55569999999999886          59999999999999999999


Q ss_pred             HHHHHHHHhc
Q psy8498          80 FCCIVVKEGV   89 (90)
Q Consensus        80 ~~~l~~~~~~   89 (90)
                      ++++|.+|..
T Consensus        83 ~~~LG~ay~~   92 (158)
T 1zu2_A           83 VWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999863

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.35  E-value=1.1e-11  Score=73.18  Aligned_cols=80  Identities=6%  Similarity=-0.138  Sum_probs=68.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH---H
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS---T   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~   79 (90)
                      +.++|..+...|+|++|+..|+++++..|....      ....+..+|.++.++|++++|+..|+++++..|+++.   +
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a   80 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV   80 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence            467899999999999999999999998776522      1345699999999999999999999999999998764   6


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      ++.+|.++.
T Consensus        81 ~~~~g~~~~   89 (225)
T 2yhc_A           81 MYMRGLTNM   89 (225)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887763

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.34  E-value=1.2e-11  Score=76.38  Aligned_cols=77  Identities=23%  Similarity=0.148  Sum_probs=67.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ..++.++|.++...|++++|+.+|+++++++|.++.++..
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  290 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN  290 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            4678999999999999999999999986655         4456899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       291 l~~~~~  296 (368)
T 1fch_A          291 LGISCI  296 (368)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.34  E-value=1.4e-12  Score=81.62  Aligned_cols=76  Identities=16%  Similarity=0.016  Sum_probs=56.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.|+|.++...|+|++|+.+|++++++.|..         ...++++|.++..+|++++|+.+|+++++++|+++.++.
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~  302 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR  302 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            46789999999999999999999999998765         556799999999999999999999999999999988888


Q ss_pred             HHHHH
Q psy8498          82 CIVVK   86 (90)
Q Consensus        82 ~l~~~   86 (90)
                      .++.+
T Consensus       303 ~L~~l  307 (338)
T 2if4_A          303 ELRAL  307 (338)
T ss_dssp             -----
T ss_pred             HHHHH
Confidence            87766

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=1.6e-11  Score=78.34  Aligned_cols=84  Identities=11%  Similarity=-0.035  Sum_probs=70.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc--CHHHHHHHHHHHHhhCCCChHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK--KYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      +.|+|.+|..+|++++|+.+|++++++.+....... ...+.++.++|.++.+.|  ++++|+++|+++++++|+++.++
T Consensus        97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~  175 (472)
T 4g1t_A           97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR-IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT  175 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC-CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc-hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence            578999999999999999999999999988744321 223556788888887754  79999999999999999999999


Q ss_pred             HHHHHHH
Q psy8498          81 CCIVVKE   87 (90)
Q Consensus        81 ~~l~~~~   87 (90)
                      ..+|.++
T Consensus       176 ~~~~~~~  182 (472)
T 4g1t_A          176 SGLAIAS  182 (472)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.34  E-value=2.3e-11  Score=64.98  Aligned_cols=77  Identities=23%  Similarity=0.220  Sum_probs=68.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ...+..+|.++...|++++|+.++++++...|.++.++..
T Consensus        38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  108 (136)
T 2fo7_A           38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN  108 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            4578999999999999999999999886554         4456899999999999999999999999999999999988


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       109 la~~~~  114 (136)
T 2fo7_A          109 LGNAYY  114 (136)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888775

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.33  E-value=1.4e-11  Score=80.95  Aligned_cols=75  Identities=12%  Similarity=-0.027  Sum_probs=40.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .++|.++...|++++|+.+|++++++.|..         ...+.++|.++.++|++++|+++|+++++++|+++.++.++
T Consensus        61 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  131 (568)
T 2vsy_A           61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEH---------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL  131 (568)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            345555555555555555555555554433         23345555555555555555555555555555555555555


Q ss_pred             HHHH
Q psy8498          84 VVKE   87 (90)
Q Consensus        84 ~~~~   87 (90)
                      |.++
T Consensus       132 ~~~~  135 (568)
T 2vsy_A          132 LNWR  135 (568)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.33  E-value=3.5e-12  Score=79.80  Aligned_cols=86  Identities=21%  Similarity=0.220  Sum_probs=48.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC-------------C------------cchhhHHHHHHhHHHHHHHhc
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG-------------E------------IIADKWEPLLNNLGHVNRKLK   57 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~------------~~~~~~~~~~~~lg~~~~~~g   57 (90)
                      +.++|.++...|++++|+.+|+++++..|....             +            ...+.....+.++|.++.+.|
T Consensus       274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  353 (388)
T 1w3b_A          274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            445666666777777777777776666544300             0            000001334466666666666


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          58 KYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      ++++|+++|+++++++|+++.++.++|.++.
T Consensus       354 ~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~  384 (388)
T 1w3b_A          354 KLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence            6666666666666666666666666666553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.33  E-value=9e-12  Score=81.92  Aligned_cols=78  Identities=15%  Similarity=-0.022  Sum_probs=71.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ...+.++|.++..+|++++|+++|+++++++|+++.++.+
T Consensus        26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   96 (568)
T 2vsy_A           26 WLMLADAELGMGDTTAGEMAVQRGLALHPGH---------PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW   96 (568)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            5688999999999999999999999987765         4566999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        97 la~~~~~  103 (568)
T 2vsy_A           97 LGHALED  103 (568)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.33  E-value=8.7e-12  Score=81.22  Aligned_cols=79  Identities=13%  Similarity=0.020  Sum_probs=71.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ++.++|.++...|+|++|+.+|++++++.|..         ..++.++|.++.++|++++|+++|+++++++|.++.++.
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   78 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   78 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            35678999999999999999999999997766         556699999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q psy8498          82 CIVVKEGV   89 (90)
Q Consensus        82 ~l~~~~~~   89 (90)
                      ++|.++..
T Consensus        79 ~lg~~~~~   86 (477)
T 1wao_1           79 RRAASNMA   86 (477)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.32  E-value=1.7e-11  Score=75.78  Aligned_cols=78  Identities=13%  Similarity=0.021  Sum_probs=70.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++..+|.++...|++++|+.+|+++++++|.++.++..
T Consensus        67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  137 (368)
T 1fch_A           67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA  137 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            5688999999999999999999999987655         4566999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       138 l~~~~~~  144 (368)
T 1fch_A          138 LAVSFTN  144 (368)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.32  E-value=6.9e-12  Score=76.20  Aligned_cols=77  Identities=17%  Similarity=0.186  Sum_probs=70.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ..++.++|.++.++|++++|+++|+++++++|+++.++..
T Consensus       239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  309 (330)
T 3hym_B          239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQN---------ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM  309 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhCccc---------hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHH
Confidence            5689999999999999999999999997765         3455999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++.++.
T Consensus       310 l~~~~~  315 (330)
T 3hym_B          310 LGHCIE  315 (330)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998873

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.32  E-value=3.5e-11  Score=67.52  Aligned_cols=74  Identities=18%  Similarity=0.158  Sum_probs=38.6

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ++|.++...|++++|+.+|+++++..|..         ...+..+|.++...|++++|++++++++...|.++.++..+|
T Consensus        81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  151 (186)
T 3as5_A           81 VLGLTYVQVQKYDLAVPLLIKVAEANPIN---------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA  151 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcHh---------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            34444455555555555555554443322         223355555555666666666666666555555555555555


Q ss_pred             HHH
Q psy8498          85 VKE   87 (90)
Q Consensus        85 ~~~   87 (90)
                      .++
T Consensus       152 ~~~  154 (186)
T 3as5_A          152 FSY  154 (186)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.32  E-value=1.3e-11  Score=81.00  Aligned_cols=85  Identities=13%  Similarity=-0.012  Sum_probs=68.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK   76 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~   76 (90)
                      +++|+|.+|..+|+|++|+.++++++++....-++. +...+..+++||.+|..+|++++|..+|++|+++     .|++
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H  431 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH  431 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            478999999999999999999999999988874432 3334667899999999999999999999999976     3555


Q ss_pred             hHH---HHHHHHHH
Q psy8498          77 AST---FCCIVVKE   87 (90)
Q Consensus        77 ~~~---~~~l~~~~   87 (90)
                      +.+   ...++.++
T Consensus       432 p~~~~~~~~l~~~~  445 (490)
T 3n71_A          432 PITKDLEAMRMQTE  445 (490)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            544   34555544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.32  E-value=8.3e-12  Score=81.02  Aligned_cols=78  Identities=15%  Similarity=-0.052  Sum_probs=70.5

Q ss_pred             chhhHHHHHHhh--------CCHHHHHHHHHHHHHHHH---hhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498           2 DLDNVELSSDKS--------FSYTVAENCFMEALSKVK---QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus         2 ~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      .+.++|.++...        |++++|+.+|++++++.|   ..         +..++++|.++..+|++++|+.+|++++
T Consensus       215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN---------PDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            357899999999        999999999999999987   44         5566999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHh
Q psy8498          71 VVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        71 ~~~~~~~~~~~~l~~~~~   88 (90)
                      +++|+++.++..++.++.
T Consensus       286 ~l~p~~~~a~~~l~~~~~  303 (474)
T 4abn_A          286 ALDPAWPEPQQREQQLLE  303 (474)
T ss_dssp             HHCTTCHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHH
Confidence            999999999999888764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.32  E-value=1.6e-11  Score=75.36  Aligned_cols=47  Identities=21%  Similarity=0.130  Sum_probs=42.1

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      +.+++++|.++.++|++++|...++++++++|+++.++.++|.++..
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~  246 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH  246 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            44568899999999999999999999999999999999999987653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.31  E-value=1.7e-11  Score=79.37  Aligned_cols=77  Identities=8%  Similarity=-0.085  Sum_probs=65.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK   76 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~   76 (90)
                      +++|+|.+|..+|+|++|+.++++++++....-++. +...+..++++|.+|..+|++++|+.+|++|+++     .|++
T Consensus       342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H  420 (433)
T 3qww_A          342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH  420 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999999999999999998874432 3344667899999999999999999999999986     3566


Q ss_pred             hHH
Q psy8498          77 AST   79 (90)
Q Consensus        77 ~~~   79 (90)
                      +.+
T Consensus       421 p~~  423 (433)
T 3qww_A          421 PYI  423 (433)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.31  E-value=2e-11  Score=72.82  Aligned_cols=77  Identities=8%  Similarity=0.033  Sum_probs=66.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++.++|.++...|++++|+.+|+++++++|.++.++..
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  147 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE  147 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCccc---------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHH
Confidence            4678999999999999999999999987765         3455889999999999999999999999999999999999


Q ss_pred             HH-HHHh
Q psy8498          83 IV-VKEG   88 (90)
Q Consensus        83 l~-~~~~   88 (90)
                      +| .++.
T Consensus       148 l~~~~~~  154 (272)
T 3u4t_A          148 LGQAYYY  154 (272)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            98 6654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.31  E-value=3.2e-11  Score=66.25  Aligned_cols=83  Identities=19%  Similarity=0.147  Sum_probs=61.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------   76 (90)
                      +.++|.++...|++++|+.+|++++++.+..++.   .....++.++|.++...|++++|++++++++++.+..      
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            5678888888899999999999999888876443   2223466888888888888888888888888775432      


Q ss_pred             hHHHHHHHHHHh
Q psy8498          77 ASTFCCIVVKEG   88 (90)
Q Consensus        77 ~~~~~~l~~~~~   88 (90)
                      ..++.++|.++.
T Consensus        89 ~~~~~~l~~~~~  100 (164)
T 3ro3_A           89 AQSCYSLGNTYT  100 (164)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            445666666654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.31  E-value=1.7e-11  Score=79.22  Aligned_cols=86  Identities=7%  Similarity=-0.092  Sum_probs=70.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK   76 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~   76 (90)
                      +++|+|.+|..+|+|++|+.++++++++....-++. +......++++|.+|..+|++++|+.+|++|+++     -|++
T Consensus       331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H  409 (429)
T 3qwp_A          331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH  409 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            478999999999999999999999999998864332 3344667899999999999999999999999976     3555


Q ss_pred             hHH---HHHHHHHHh
Q psy8498          77 AST---FCCIVVKEG   88 (90)
Q Consensus        77 ~~~---~~~l~~~~~   88 (90)
                      +.+   +.+++.+..
T Consensus       410 p~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          410 SLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            544   456666654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.31  E-value=1.8e-11  Score=76.61  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=46.0

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .++|.++...|++++|+..|++++++.|..         +.++.++|.++.+.|++++|+++|+++++++|.++.++..+
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  311 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIELQPHF---------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL  311 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence            455666666666666666666666654433         23346666666666666666666666666666666666666


Q ss_pred             HHHHh
Q psy8498          84 VVKEG   88 (90)
Q Consensus        84 ~~~~~   88 (90)
                      |.++.
T Consensus       312 ~~~~~  316 (388)
T 1w3b_A          312 ANIKR  316 (388)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.31  E-value=3.7e-11  Score=69.43  Aligned_cols=77  Identities=18%  Similarity=0.060  Sum_probs=60.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|.++...|++++|+.+|+++++..|..         ..++..+|.++...|++++|+++++++++.+|.++.++..
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   81 (225)
T 2vq2_A           11 KTQLAMEYMRGQDYRQATASIEDALKSDPKN---------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN   81 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence            4567888888888888888888888876654         3445778888888888888888888888888887777777


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus        82 l~~~~~   87 (225)
T 2vq2_A           82 YGWFLC   87 (225)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.31  E-value=4.2e-11  Score=67.19  Aligned_cols=77  Identities=12%  Similarity=0.082  Sum_probs=64.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|.++...|++++|+.+++++++..|..         ..++..+|.++...|++++|.+++++++...|.++.++..
T Consensus        45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  115 (186)
T 3as5_A           45 ALHLGIAYVKTGAVDRGTELLERSLADAPDN---------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR  115 (186)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHH
Confidence            4567888889999999999999998886544         4456889999999999999999999999999988888888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       116 ~a~~~~  121 (186)
T 3as5_A          116 LGVALD  121 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.31  E-value=1.3e-11  Score=75.94  Aligned_cols=81  Identities=11%  Similarity=0.089  Sum_probs=59.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh-----
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA-----   77 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----   77 (90)
                      +.++|.+|.. |++++|+.+|++++++.+..+..   .....+++++|.++.++|++++|+.+|++++.+.|.+.     
T Consensus       119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (307)
T 2ifu_A          119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL---RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC  194 (307)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence            5678888888 88888888888888888775332   22245678889999999999999999999888765332     


Q ss_pred             -HHHHHHHHHH
Q psy8498          78 -STFCCIVVKE   87 (90)
Q Consensus        78 -~~~~~l~~~~   87 (90)
                       .++.++|.++
T Consensus       195 ~~~~~~~g~~~  205 (307)
T 2ifu_A          195 YKKCIAQVLVQ  205 (307)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence             2455566555

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.31  E-value=2.2e-11  Score=76.34  Aligned_cols=85  Identities=14%  Similarity=0.027  Sum_probs=71.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------   76 (90)
                      +.++|.+|...|++++|+.++++|+++.+..+..  ......+++++|.++..+|++++|+.+|++++++.+..      
T Consensus       146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  223 (383)
T 3ulq_A          146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM  223 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence            5689999999999999999999999999887542  23335678999999999999999999999999886533      


Q ss_pred             hHHHHHHHHHHhc
Q psy8498          77 ASTFCCIVVKEGV   89 (90)
Q Consensus        77 ~~~~~~l~~~~~~   89 (90)
                      +.++.++|.++..
T Consensus       224 ~~~~~~lg~~y~~  236 (383)
T 3ulq_A          224 GRTLYNIGLCKNS  236 (383)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            2478889988753

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.30  E-value=6.6e-12  Score=77.24  Aligned_cols=84  Identities=13%  Similarity=0.002  Sum_probs=66.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-----   76 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----   76 (90)
                      .+.++|.+|...|++++|+.+|++++++.+..+..   .....++.++|.+|.. |++++|+.+|++++.+.|..     
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~  153 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP---DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ  153 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH---HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence            35788999999999999999999999998776443   2234567899999988 99999999999999887633     


Q ss_pred             -hHHHHHHHHHHhc
Q psy8498          77 -ASTFCCIVVKEGV   89 (90)
Q Consensus        77 -~~~~~~l~~~~~~   89 (90)
                       ..++.++|.++..
T Consensus       154 ~~~~~~~lg~~~~~  167 (307)
T 2ifu_A          154 AAELIGKASRLLVR  167 (307)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence             4567788887753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.30  E-value=3.2e-12  Score=86.15  Aligned_cols=77  Identities=12%  Similarity=-0.030  Sum_probs=54.4

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.++...|++++|+..|++++++.|+.         ...++++|.++.++|++++ +++|+++++++|+++.+++
T Consensus       469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~  538 (681)
T 2pzi_A          469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF  538 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH
Confidence            35688999999999999999999999998876         2233566666666666666 6666666666666666666


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      ++|.++.
T Consensus       539 ~lg~~~~  545 (681)
T 2pzi_A          539 GLARARS  545 (681)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665553

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.30  E-value=4e-11  Score=70.60  Aligned_cols=87  Identities=8%  Similarity=0.012  Sum_probs=69.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC-----------------CcchhhHHHHHHhHHHHHHHhcCHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG-----------------EIIADKWEPLLNNLGHVNRKLKKYEEALEF   65 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   65 (90)
                      +.++|.++...|++++|+.+|++++++.|....                 .........++..+|.++...|++++|+.+
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  161 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA  161 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence            567899999999999999999999995432100                 000112245679999999999999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          66 HKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        66 ~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      |++++.++|.++.++..+|.++..
T Consensus       162 ~~~a~~~~~~~~~~~~~l~~~~~~  185 (258)
T 3uq3_A          162 YTEMIKRAPEDARGYSNRAAALAK  185 (258)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHHHHHHHH
Confidence            999999999999999999988753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.29  E-value=3.2e-11  Score=73.77  Aligned_cols=76  Identities=12%  Similarity=-0.059  Sum_probs=52.3

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .++|.++...|++++|+.+|+++++..|..         +.++..+|.++...|++++|+.+|+++++++|+++.+...+
T Consensus       276 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  346 (359)
T 3ieg_A          276 ERICHCFSKDEKPVEAIRICSEVLQMEPDN---------VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL  346 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            346677777777777777777777765443         33457777777777777777777777777777777776666


Q ss_pred             HHHHh
Q psy8498          84 VVKEG   88 (90)
Q Consensus        84 ~~~~~   88 (90)
                      +.++.
T Consensus       347 ~~~~~  351 (359)
T 3ieg_A          347 EKAQR  351 (359)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.29  E-value=2.5e-11  Score=72.66  Aligned_cols=72  Identities=8%  Similarity=-0.102  Sum_probs=62.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH--------hcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK--------LKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~~   74 (90)
                      +.++|.++...|++++|+..|+++++..|....      ....++.+|.++..        +|++++|+..|++++...|
T Consensus        55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  128 (261)
T 3qky_A           55 QFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP  128 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence            567899999999999999999999999886522      24567999999999        9999999999999999999


Q ss_pred             CChHHH
Q psy8498          75 MKASTF   80 (90)
Q Consensus        75 ~~~~~~   80 (90)
                      +++.+.
T Consensus       129 ~~~~~~  134 (261)
T 3qky_A          129 NHELVD  134 (261)
T ss_dssp             TCTTHH
T ss_pred             CchhHH
Confidence            876665

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.29  E-value=4.6e-11  Score=73.06  Aligned_cols=77  Identities=9%  Similarity=-0.212  Sum_probs=67.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|.++...|++++|+.+|+++++..|..         +.++..+|.++...|++++|+.+++++++++|.++.++..
T Consensus         6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   76 (359)
T 3ieg_A            6 HLELGKKLLAAGQLADALSQFHAAVDGDPDN---------YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ   76 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHH
Confidence            5678999999999999999999999987665         4456889999999999999999999999999999988888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus        77 l~~~~~   82 (359)
T 3ieg_A           77 RGHLLL   82 (359)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.28  E-value=9.4e-12  Score=80.19  Aligned_cols=77  Identities=14%  Similarity=0.116  Sum_probs=70.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|..+...|++++|+.+|+++++..|..         +.++.++|.++..+|++++|++.|+++++++|.++.++..
T Consensus        28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   98 (537)
T 3fp2_A           28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---------PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR   98 (537)
T ss_dssp             HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHH
Confidence            5678999999999999999999999998766         5566999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus        99 la~~~~  104 (537)
T 3fp2_A           99 RASANE  104 (537)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.28  E-value=1.2e-11  Score=80.32  Aligned_cols=79  Identities=15%  Similarity=-0.058  Sum_probs=71.8

Q ss_pred             chhhHHHHHHhh---------CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh--------cCHHHHHH
Q psy8498           2 DLDNVELSSDKS---------FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL--------KKYEEALE   64 (90)
Q Consensus         2 ~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~   64 (90)
                      .+.++|.++...         |++++|+.+|++++++.|..         ...++++|.++..+        |++++|+.
T Consensus       172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---------GRSWYILGNAYLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            356889999999         99999999999999998776         44569999999999        99999999


Q ss_pred             HHHHHHhhCC---CChHHHHHHHHHHhc
Q psy8498          65 FHKQALVVAP---MKASTFCCIVVKEGV   89 (90)
Q Consensus        65 ~~~~al~~~~---~~~~~~~~l~~~~~~   89 (90)
                      +|+++++++|   .++.++.++|.++..
T Consensus       243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~  270 (474)
T 4abn_A          243 AYAQAEKVDRKASSNPDLHLNRATLHKY  270 (474)
T ss_dssp             HHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence            9999999999   999999999998864

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.27  E-value=7.1e-11  Score=69.16  Aligned_cols=75  Identities=16%  Similarity=0.056  Sum_probs=37.7

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..+|.++...|++++|+.+|+++++..|..         ..++..+|.++...|++++|+++++++++..|.++.++..+
T Consensus        61 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  131 (243)
T 2q7f_A           61 INFANLLSSVNELERALAFYDKALELDSSA---------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML  131 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            345555555555555555555555554332         22334455555555555555555555555555444444444


Q ss_pred             HHHH
Q psy8498          84 VVKE   87 (90)
Q Consensus        84 ~~~~   87 (90)
                      |.++
T Consensus       132 a~~~  135 (243)
T 2q7f_A          132 GTVL  135 (243)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.27  E-value=6.7e-11  Score=71.75  Aligned_cols=78  Identities=19%  Similarity=0.147  Sum_probs=68.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|.++...|++++|+.+|+++++..|..         ..++..+|.++...|++++|+.+++++++..|.++.++..
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  245 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRPDD---------AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN  245 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            4678999999999999999999999987654         4456899999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       246 l~~~~~~  252 (327)
T 3cv0_A          246 MAVSYSN  252 (327)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888753

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.27  E-value=2.8e-11  Score=70.11  Aligned_cols=75  Identities=15%  Similarity=0.039  Sum_probs=66.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++++.      ..      +.+++++|.++...|++++|+.+|++++.++|.++.++.+
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~------~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   76 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQD------PH------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ   76 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSS------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcC------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            46789999999999999999999951      11      3466999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        77 lg~~~~~   83 (213)
T 1hh8_A           77 RGMLYYQ   83 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.26  E-value=6.6e-11  Score=69.28  Aligned_cols=73  Identities=19%  Similarity=0.098  Sum_probs=33.1

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ++|.++...|++++|+.+|+++++..|..         ..++..+|.++...|++++|+.+++++++..|.++.++..+|
T Consensus        96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  166 (243)
T 2q7f_A           96 GAGNVYVVKEMYKEAKDMFEKALRAGMEN---------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG  166 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTCCS---------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            44555555555555555555555543322         122244444444444444444444444444444444444444


Q ss_pred             HH
Q psy8498          85 VK   86 (90)
Q Consensus        85 ~~   86 (90)
                      .+
T Consensus       167 ~~  168 (243)
T 2q7f_A          167 MC  168 (243)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.26  E-value=3.4e-11  Score=78.61  Aligned_cols=77  Identities=13%  Similarity=0.028  Sum_probs=70.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..|+++++..|..         ..++..+|.+|.+.|++++|.++|+++++++|+++.++..
T Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  589 (597)
T 2xpi_A          519 WANLGHAYRKLKMYDAAIDALNQGLLLSTND---------ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL  589 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence            5678999999999999999999999987654         4566999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++.++.
T Consensus       590 l~~~~~  595 (597)
T 2xpi_A          590 LKRALE  595 (597)
T ss_dssp             HHHTTC
T ss_pred             HHHHHh
Confidence            998875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.26  E-value=1.6e-10  Score=75.47  Aligned_cols=85  Identities=27%  Similarity=0.357  Sum_probs=73.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+++|+++++..|+.+..  ...+..++..+|.++.+.|++++|++.|+++++++|.++.++..
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  555 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA  555 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc--hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            5678999999999999999999999998875433  12224466999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       556 l~~~~~~  562 (597)
T 2xpi_A          556 IALVYLH  562 (597)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.26  E-value=5.5e-11  Score=70.62  Aligned_cols=86  Identities=24%  Similarity=0.179  Sum_probs=70.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh--------C
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--------A   73 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~   73 (90)
                      .+.++|.++...|++++|+.+|++++++.+...+.. ......++.++|.++...|++++|+.++++++++        .
T Consensus        87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  165 (283)
T 3edt_B           87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD  165 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            357899999999999999999999999976652221 1222556799999999999999999999999998        6


Q ss_pred             CCChHHHHHHHHHHh
Q psy8498          74 PMKASTFCCIVVKEG   88 (90)
Q Consensus        74 ~~~~~~~~~l~~~~~   88 (90)
                      |....++..+|.++.
T Consensus       166 ~~~~~~~~~la~~~~  180 (283)
T 3edt_B          166 PNVAKTKNNLASCYL  180 (283)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666778888888874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.25  E-value=3.1e-11  Score=72.24  Aligned_cols=80  Identities=9%  Similarity=-0.112  Sum_probs=68.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC---hHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---AST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~   79 (90)
                      +.+.|..+...|+|++|+..|+++++..|...      ..+.+++.+|.++.++|++++|+..|++++...|++   +.+
T Consensus        18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE------WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            46789999999999999999999999877642      224567999999999999999999999999998854   567


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      ++.+|.++.
T Consensus        92 ~~~lg~~~~  100 (261)
T 3qky_A           92 EYERAMCYY  100 (261)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.25  E-value=9.1e-11  Score=74.25  Aligned_cols=78  Identities=9%  Similarity=-0.223  Sum_probs=65.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|..+...|++++|+.+|+++++..|..         ..+++.+|.++...|++++|+.+|+++++.+|.++.++..
T Consensus        29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   99 (450)
T 2y4t_A           29 HLELGKKLLAAGQLADALSQFHAAVDGDPDN---------YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ   99 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            4577888999999999999999999876654         4456889999999999999999999999999988888888


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       100 l~~~~~~  106 (450)
T 2y4t_A          100 RGHLLLK  106 (450)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=8.1e-11  Score=69.89  Aligned_cols=87  Identities=24%  Similarity=0.197  Sum_probs=70.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh--------C
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--------A   73 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~   73 (90)
                      ++.++|.++...|++++|+.+|++++++.....+.. ......++.++|.++..+|++++|+++|++++.+        +
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            356899999999999999999999999986652111 1223556799999999999999999999999988        4


Q ss_pred             CCChHHHHHHHHHHhc
Q psy8498          74 PMKASTFCCIVVKEGV   89 (90)
Q Consensus        74 ~~~~~~~~~l~~~~~~   89 (90)
                      |....++.++|.++..
T Consensus       124 ~~~~~~~~~la~~~~~  139 (283)
T 3edt_B          124 PDVAKQLNNLALLCQN  139 (283)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            5667778889988753

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.24  E-value=1.2e-10  Score=66.74  Aligned_cols=84  Identities=11%  Similarity=0.057  Sum_probs=68.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh---CC----
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV---AP----   74 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~----   74 (90)
                      .+.++|.++...|++++|+.+|++++++.+..+..   .....++.++|.++...|++++|++++++++.+   .+    
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH---TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            35688999999999999999999999998877543   233556799999999999999999999999988   33    


Q ss_pred             CChHHHHHHHHHHh
Q psy8498          75 MKASTFCCIVVKEG   88 (90)
Q Consensus        75 ~~~~~~~~l~~~~~   88 (90)
                      ....++.++|.++.
T Consensus       105 ~~~~~~~~lg~~~~  118 (203)
T 3gw4_A          105 AASANAYEVATVAL  118 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            22455777777764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.24  E-value=8.4e-11  Score=75.20  Aligned_cols=78  Identities=14%  Similarity=0.089  Sum_probs=69.6

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+...|..+...|+|++|+.+|+++++..|+          +..+..+|.++.+.|++++|+.+++++++++|.++.++.
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   77 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELKED----------PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLL   77 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHH
Confidence            3568899999999999999999999998752          345699999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q psy8498          82 CIVVKEGV   89 (90)
Q Consensus        82 ~l~~~~~~   89 (90)
                      .+|.++..
T Consensus        78 ~l~~~~~~   85 (514)
T 2gw1_A           78 RRASANEG   85 (514)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.24  E-value=6.3e-11  Score=71.84  Aligned_cols=78  Identities=12%  Similarity=0.065  Sum_probs=69.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC-------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-------   75 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------   75 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++..+|.++..+|++++|+.++++++.+.|.       
T Consensus       209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  279 (327)
T 3cv0_A          209 WNKLGATLANGNRPQEALDAYNRALDINPGY---------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE  279 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence            5688999999999999999999999987665         445699999999999999999999999999998       


Q ss_pred             -----ChHHHHHHHHHHhc
Q psy8498          76 -----KASTFCCIVVKEGV   89 (90)
Q Consensus        76 -----~~~~~~~l~~~~~~   89 (90)
                           ++.++..+|.++..
T Consensus       280 ~~~~~~~~~~~~l~~~~~~  298 (327)
T 3cv0_A          280 ASREATRSMWDFFRMLLNV  298 (327)
T ss_dssp             -CCTHHHHHHHHHHHHHHH
T ss_pred             chhhcCHHHHHHHHHHHHh
Confidence                 78888888888753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.24  E-value=1.2e-10  Score=63.86  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=67.2

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC------
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM------   75 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------   75 (90)
                      .+.++|.++...|++++|+.+|++++++.+..++.   .....++.++|.++...|++++|+.++++++.+.+.      
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  127 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  127 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence            35689999999999999999999999999887443   223456799999999999999999999999987431      


Q ss_pred             ChHHHHHHHHHHh
Q psy8498          76 KASTFCCIVVKEG   88 (90)
Q Consensus        76 ~~~~~~~l~~~~~   88 (90)
                      .+.++..+|.++.
T Consensus       128 ~~~~~~~la~~~~  140 (164)
T 3ro3_A          128 EGRACWSLGNAYT  140 (164)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            2345666776653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.24  E-value=6.2e-11  Score=70.04  Aligned_cols=75  Identities=15%  Similarity=-0.117  Sum_probs=38.1

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      ..+|.++...|++++|+.+|+++++..|..         ..++..+|.++...|++++|+++++++++.+|.++.++..+
T Consensus        41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSS---------ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             HHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            344555555555555555555555543332         22334555555555555555555555555555555555554


Q ss_pred             HHHH
Q psy8498          84 VVKE   87 (90)
Q Consensus        84 ~~~~   87 (90)
                      |.++
T Consensus       112 a~~~  115 (252)
T 2ho1_A          112 GGFL  115 (252)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.23  E-value=1.1e-10  Score=69.52  Aligned_cols=73  Identities=10%  Similarity=-0.083  Sum_probs=63.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++++++.|..         ..++..+|.++...|++++|+.+|+++++++|.++.....
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  150 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW  150 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCccc---------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHH
Confidence            5688999999999999999999999997765         3456999999999999999999999999999988755444


Q ss_pred             HH
Q psy8498          83 IV   84 (90)
Q Consensus        83 l~   84 (90)
                      .+
T Consensus       151 ~~  152 (275)
T 1xnf_A          151 LY  152 (275)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.22  E-value=1.1e-10  Score=73.88  Aligned_cols=75  Identities=12%  Similarity=-0.066  Sum_probs=55.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.++++++++.|..         ..++..+|.++...|++++|+.+|+++++++|+++.++..
T Consensus       298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  368 (450)
T 2y4t_A          298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDN---------VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG  368 (450)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence            3456777777777777777777777765544         3445778888888888888888888888888888777777


Q ss_pred             HHHH
Q psy8498          83 IVVK   86 (90)
Q Consensus        83 l~~~   86 (90)
                      ++.+
T Consensus       369 l~~~  372 (450)
T 2y4t_A          369 LEKA  372 (450)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.21  E-value=2e-10  Score=65.77  Aligned_cols=85  Identities=16%  Similarity=0.150  Sum_probs=67.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC--C---
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--K---   76 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~---   76 (90)
                      .+.++|.++...|++++|+.+|++++++.+..++.  ......++.++|.++..+|++++|+.++++++.+.+.  +   
T Consensus        68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  145 (203)
T 3gw4_A           68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPED--PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA  145 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence            35789999999999999999999999998876533  1123456799999999999999999999999976431  2   


Q ss_pred             -hHHHHHHHHHHh
Q psy8498          77 -ASTFCCIVVKEG   88 (90)
Q Consensus        77 -~~~~~~l~~~~~   88 (90)
                       ..++..+|.++.
T Consensus       146 ~~~~~~~la~~~~  158 (203)
T 3gw4_A          146 IACAFRGLGDLAQ  158 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence             223466776664

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.20  E-value=2.1e-10  Score=67.71  Aligned_cols=75  Identities=20%  Similarity=0.142  Sum_probs=35.7

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHH--HHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALS--KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .++|.++...|++++|+.+|+++++  ..|..         ...+..+|.++...|++++|+.+++++++..|.++.++.
T Consensus       109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  179 (252)
T 2ho1_A          109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPER---------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL  179 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhCccCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH
Confidence            3445555555555555555555554  11111         223344555555555555555555555555554444444


Q ss_pred             HHHHHH
Q psy8498          82 CIVVKE   87 (90)
Q Consensus        82 ~l~~~~   87 (90)
                      .+|.++
T Consensus       180 ~la~~~  185 (252)
T 2ho1_A          180 EMADLL  185 (252)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.20  E-value=2.1e-10  Score=66.22  Aligned_cols=77  Identities=16%  Similarity=0.020  Sum_probs=43.0

Q ss_pred             hhHHHHHHhh-CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           4 DNVELSSDKS-FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         4 ~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      .++|.++... |++++|+.+|+++++ .+....      ...++..+|.++...|++++|+.+++++++..|.++.++..
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  152 (225)
T 2vq2_A           80 NNYGWFLCGRLNRPAESMAYFDKALA-DPTYPT------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE  152 (225)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSC------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence            4556666666 666666666666665 221111      02234556666666666666666666666666665555555


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|.++
T Consensus       153 la~~~  157 (225)
T 2vq2_A          153 LARTK  157 (225)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.19  E-value=1.8e-10  Score=72.24  Aligned_cols=84  Identities=17%  Similarity=0.014  Sum_probs=69.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC------CC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------MK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~   76 (90)
                      +.++|.+|...|++++|+.++++++++.+..+..  ....+.+++++|.++..+|++++|+++|++++++.+      ..
T Consensus       144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  221 (378)
T 3q15_A          144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI  221 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            5689999999999999999999999999886442  123356789999999999999999999999998743      12


Q ss_pred             hHHHHHHHHHHh
Q psy8498          77 ASTFCCIVVKEG   88 (90)
Q Consensus        77 ~~~~~~l~~~~~   88 (90)
                      +.++.++|.++.
T Consensus       222 ~~~~~~lg~~y~  233 (378)
T 3q15_A          222 AISLLNIANSYD  233 (378)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            456788888875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.19  E-value=3.3e-11  Score=62.87  Aligned_cols=66  Identities=12%  Similarity=0.003  Sum_probs=58.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh--hCCCcchhhHHHHHHhHHHHHHHh-cCHHHHHHHHHHHHhhCCCCh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ--LGGEIIADKWEPLLNNLGHVNRKL-KKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~   77 (90)
                      +.++|.++...|++++|+.+|+++++..|.  .         ..++.++|.++... |++++|++++++++...|.++
T Consensus        43 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           43 WLMKGKALYNLERYEEAVDCYNYVINVIEDEYN---------KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC---------HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCcccch---------HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            567899999999999999999999998765  3         44569999999999 999999999999999988653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.16  E-value=2.9e-10  Score=70.73  Aligned_cols=83  Identities=19%  Similarity=0.154  Sum_probs=60.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------   76 (90)
                      +.++|.++...|++++|+.+|++++++.+..+..   .....++.++|.++..+|++++|+.++++++.+.|..      
T Consensus       190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  266 (406)
T 3sf4_A          190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE  266 (406)
T ss_dssp             HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence            5677888888888888888888888888776432   2223456788888888888888888888888776543      


Q ss_pred             hHHHHHHHHHHh
Q psy8498          77 ASTFCCIVVKEG   88 (90)
Q Consensus        77 ~~~~~~l~~~~~   88 (90)
                      ..++..+|.++.
T Consensus       267 ~~~~~~la~~~~  278 (406)
T 3sf4_A          267 AQSCYSLGNTYT  278 (406)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            455666666654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.15  E-value=3.1e-10  Score=73.11  Aligned_cols=77  Identities=14%  Similarity=-0.034  Sum_probs=51.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..|+++++..|..         ...+..+|.++...|++++|+.+++++++..|.++.++..
T Consensus       313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  383 (537)
T 3fp2_A          313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF  383 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            3456667777777777777777777665543         2234667777777777777777777777777777777777


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       384 l~~~~~  389 (537)
T 3fp2_A          384 FAEILT  389 (537)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.15  E-value=1.3e-10  Score=66.11  Aligned_cols=70  Identities=11%  Similarity=-0.096  Sum_probs=58.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +...|..+...|++++|+..|+++++..|+.         ...+..+|.++...|++++|+..+++++..+| ++.....
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~   78 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR---------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSL   78 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS---------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHH
Confidence            4578899999999999999999999999887         55568999999999999999998888888877 6554433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.14  E-value=4.5e-10  Score=63.60  Aligned_cols=69  Identities=10%  Similarity=0.018  Sum_probs=60.5

Q ss_pred             hhhHHHH-HHhhCCH--HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498           3 LDNVELS-SDKSFSY--TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         3 ~~~l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      +.++|.+ +...|++  ++|+.+|+++++..|..         ...+.++|.++...|++++|+.+|+++++++|.++..
T Consensus        81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A           81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNE---------ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence            4678888 8899999  99999999999997765         4556999999999999999999999999999977554


Q ss_pred             H
Q psy8498          80 F   80 (90)
Q Consensus        80 ~   80 (90)
                      .
T Consensus       152 ~  152 (177)
T 2e2e_A          152 T  152 (177)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.14  E-value=2.7e-10  Score=69.92  Aligned_cols=69  Identities=20%  Similarity=0.080  Sum_probs=61.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHH-HHHHHHHHHhhCCCChHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE-ALEFHKQALVVAPMKASTF   80 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~   80 (90)
                      +.++|.++...|++++|+..|+++++..|..         +.++.++|.++...|++++ +.++++++++++|+++.+.
T Consensus       203 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGH---------PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence            5689999999999999999999999998877         5566999999999999976 5789999999999988764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.13  E-value=1e-10  Score=62.27  Aligned_cols=63  Identities=14%  Similarity=0.116  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      ++|+..|+++++..|..         ...++++|.++...|++++|+.+|+++++++|.++.++..+|.++.
T Consensus         2 ~~a~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN---------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            35788999999987765         4566999999999999999999999999999999999999998875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.13  E-value=6.2e-10  Score=67.83  Aligned_cols=69  Identities=16%  Similarity=-0.007  Sum_probs=59.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVA   73 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~   73 (90)
                      .+.|+|.+|..+|+|++|+.++++++++.+..+..   ...+.+++++|.++.++| .+++|+++|++|+.+.
T Consensus       198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM---ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC---TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH---HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999887443   223567799999999999 5799999999999774

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.12  E-value=5.8e-10  Score=67.16  Aligned_cols=85  Identities=26%  Similarity=0.197  Sum_probs=68.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh--------CC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--------AP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~   74 (90)
                      +.++|.++...|++++|+.+|++++++.....+.. ......++.++|.++...|++++|++++++++.+        .|
T Consensus       114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  192 (311)
T 3nf1_A          114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP  192 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            56889999999999999999999999975541110 1222456799999999999999999999999998        56


Q ss_pred             CChHHHHHHHHHHh
Q psy8498          75 MKASTFCCIVVKEG   88 (90)
Q Consensus        75 ~~~~~~~~l~~~~~   88 (90)
                      ....++..+|.++.
T Consensus       193 ~~~~~~~~la~~~~  206 (311)
T 3nf1_A          193 NVAKTKNNLASCYL  206 (311)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66677888888764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.11  E-value=4.5e-11  Score=72.93  Aligned_cols=65  Identities=22%  Similarity=0.081  Sum_probs=59.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      +.++|.++...|++++|+..|++++++.|..         ...++++|.++..+|++++|+.+|+++++++|++
T Consensus        41 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           41 YTNRALCYLKMQQPEQALADCRRALELDGQS---------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            5789999999999999999999999987765         5567999999999999999999999999998855

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.10  E-value=8.9e-10  Score=68.52  Aligned_cols=84  Identities=17%  Similarity=0.163  Sum_probs=64.4

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-----   76 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----   76 (90)
                      .+.++|.++...|++++|+.+|++++++.+..+..   .....++.++|.++...|++++|+.++++++.+.+..     
T Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  305 (406)
T 3sf4_A          229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG  305 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc---hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH
Confidence            35678999999999999999999999988876443   2224466888999999999999999999988875432     


Q ss_pred             -hHHHHHHHHHHh
Q psy8498          77 -ASTFCCIVVKEG   88 (90)
Q Consensus        77 -~~~~~~l~~~~~   88 (90)
                       +.++..+|.++.
T Consensus       306 ~~~~~~~la~~~~  318 (406)
T 3sf4_A          306 EGRACWSLGNAYT  318 (406)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence             445666776654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.10  E-value=1.1e-09  Score=66.17  Aligned_cols=83  Identities=19%  Similarity=0.154  Sum_probs=58.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------   76 (90)
                      +.++|.++...|++++|+.+|++++++.+..+..   .....++.++|.++...|++++|+.++++++.+.+..      
T Consensus       186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  262 (338)
T 3ro2_A          186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE  262 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence            4577888888888888888888888887776432   2223356778888888888888888888888765533      


Q ss_pred             hHHHHHHHHHHh
Q psy8498          77 ASTFCCIVVKEG   88 (90)
Q Consensus        77 ~~~~~~l~~~~~   88 (90)
                      +.++..+|.++.
T Consensus       263 ~~~~~~la~~~~  274 (338)
T 3ro2_A          263 AQSCYSLGNTYT  274 (338)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            445556666553

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.09  E-value=8.2e-10  Score=69.24  Aligned_cols=83  Identities=12%  Similarity=0.043  Sum_probs=66.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh------CCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV------APMK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~~   76 (90)
                      +.++|.++...|++++|+.+|++++++.+..++.   .....++..+|.++...|++++|+.+|++++.+      .|..
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  165 (411)
T 4a1s_A           89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR---LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE  165 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence            5678999999999999999999999987665432   223556789999999999999999999999988      3445


Q ss_pred             hHHHHHHHHHHh
Q psy8498          77 ASTFCCIVVKEG   88 (90)
Q Consensus        77 ~~~~~~l~~~~~   88 (90)
                      ..++..+|.++.
T Consensus       166 ~~~~~~l~~~~~  177 (411)
T 4a1s_A          166 GRALYNLGNVYH  177 (411)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            567778887764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.09  E-value=4.2e-10  Score=70.58  Aligned_cols=82  Identities=16%  Similarity=0.114  Sum_probs=68.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh------CCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV------APMK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~~   76 (90)
                      +..+|..+...|++++|+.+|+++++..|..     ......++..+|.++...|++++|+.+|++++++      .|..
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTED-----LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-----hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            4578999999999999999999999985543     3333456799999999999999999999999988      4556


Q ss_pred             hHHHHHHHHHHhc
Q psy8498          77 ASTFCCIVVKEGV   89 (90)
Q Consensus        77 ~~~~~~l~~~~~~   89 (90)
                      ..++..+|.++..
T Consensus       126 ~~~~~~l~~~~~~  138 (411)
T 4a1s_A          126 AKSSGNLGNTLKV  138 (411)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6778888887753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=1.4e-09  Score=65.41  Aligned_cols=87  Identities=26%  Similarity=0.321  Sum_probs=70.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC--------
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--------   73 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------   73 (90)
                      .+.++|.++...|++++|+.+|++++++.+...+.. ......++..+|.++...|++++|+.++++++.+.        
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            357899999999999999999999999877663111 12234567999999999999999999999999873        


Q ss_pred             CCChHHHHHHHHHHhc
Q psy8498          74 PMKASTFCCIVVKEGV   89 (90)
Q Consensus        74 ~~~~~~~~~l~~~~~~   89 (90)
                      |....++..+|.++..
T Consensus       108 ~~~~~~~~~l~~~~~~  123 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGK  123 (311)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            4556778888887753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.08  E-value=1.1e-09  Score=66.66  Aligned_cols=83  Identities=8%  Similarity=-0.100  Sum_probs=65.4

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh---CCCCh---
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV---APMKA---   77 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~---   77 (90)
                      ..+|.++...|++++|+.+|++++++.+...+.   .....+++++|.+|..+|++++|+.+|++++++   .|.+.   
T Consensus       119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~  195 (293)
T 2qfc_A          119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence            457888999999999999999999876654332   112456799999999999999999999999944   44432   


Q ss_pred             -HHHHHHHHHHhc
Q psy8498          78 -STFCCIVVKEGV   89 (90)
Q Consensus        78 -~~~~~l~~~~~~   89 (90)
                       .++.++|.++..
T Consensus       196 ~~~~~nlg~~y~~  208 (293)
T 2qfc_A          196 VKVRYNHAKALYL  208 (293)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHH
Confidence             578899988753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.06  E-value=1.4e-09  Score=65.59  Aligned_cols=83  Identities=14%  Similarity=0.108  Sum_probs=65.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------   76 (90)
                      +.++|.++...|++++|+.++++++++.+..+..   .....++..+|.++...|++++|+.++++++++.|..      
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  122 (338)
T 3ro2_A           46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  122 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence            4578999999999999999999999987776443   2234567899999999999999999999999886533      


Q ss_pred             hHHHHHHHHHHh
Q psy8498          77 ASTFCCIVVKEG   88 (90)
Q Consensus        77 ~~~~~~l~~~~~   88 (90)
                      ..++..+|.++.
T Consensus       123 ~~~~~~l~~~~~  134 (338)
T 3ro2_A          123 ARALYNLGNVYH  134 (338)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            236667777654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.1e-09  Score=69.95  Aligned_cols=84  Identities=11%  Similarity=0.027  Sum_probs=68.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH---hcCHHHHHHHHHHHHhhCCCChHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK---LKKYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      +.++|.++...|++++|+.+|+++++..|.......   ....+..+|.++..   .|++++|+.++++++.++|.++.+
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  451 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV---GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA  451 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS---CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH---HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence            567899999999999999999999999887632210   01245889999999   999999999999999999999988


Q ss_pred             HHHHHHHHhc
Q psy8498          80 FCCIVVKEGV   89 (90)
Q Consensus        80 ~~~l~~~~~~   89 (90)
                      +..+|.++..
T Consensus       452 ~~~la~~~~~  461 (514)
T 2gw1_A          452 KIGLAQMKLQ  461 (514)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888887753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.06  E-value=1.7e-09  Score=70.96  Aligned_cols=81  Identities=15%  Similarity=0.008  Sum_probs=65.0

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC---hH
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK---AS   78 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~   78 (90)
                      +..+..+|+|++|+..+++++++....-++. +.....+++++|.+|..+|+|++|+.++++++++     .|++   +.
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADT-NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            4457789999999999999999987753332 2334667899999999999999999999999976     3444   45


Q ss_pred             HHHHHHHHHh
Q psy8498          79 TFCCIVVKEG   88 (90)
Q Consensus        79 ~~~~l~~~~~   88 (90)
                      ++.++|.+|.
T Consensus       395 ~l~nLa~~~~  404 (490)
T 3n71_A          395 AVMRAGLTNW  404 (490)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5789998875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.05  E-value=2.6e-09  Score=64.04  Aligned_cols=72  Identities=19%  Similarity=0.088  Sum_probs=42.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCChH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~   78 (90)
                      +.++|.++...|++++|+.+|+++++  +..         +..++++|.++..    .|++++|+.+|+++++..  ++.
T Consensus         9 ~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~---------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~   75 (273)
T 1ouv_A            9 LVGLGAKSYKEKDFTQAKKYFEKACD--LKE---------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN   75 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--TTC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHH--CCC---------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH
Confidence            34566666667777777777776666  211         2234556666666    666666666666666553  455


Q ss_pred             HHHHHHHHH
Q psy8498          79 TFCCIVVKE   87 (90)
Q Consensus        79 ~~~~l~~~~   87 (90)
                      ++..+|.++
T Consensus        76 a~~~lg~~~   84 (273)
T 1ouv_A           76 GCHLLGNLY   84 (273)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.04  E-value=2.4e-09  Score=63.09  Aligned_cols=72  Identities=10%  Similarity=-0.036  Sum_probs=60.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH------------------hcCHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK------------------LKKYEEALE   64 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~------------------~g~~~~A~~   64 (90)
                      +.++|.++...|++++|+..|+++++..|+...      .+..++.+|.++..                  +|++++|+.
T Consensus        44 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           44 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------HHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            567899999999999999999999999887622      13355788888876                  579999999


Q ss_pred             HHHHHHhhCCCChHHH
Q psy8498          65 FHKQALVVAPMKASTF   80 (90)
Q Consensus        65 ~~~~al~~~~~~~~~~   80 (90)
                      .|+++++..|+++.+.
T Consensus       118 ~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A          118 DFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             HHHHHHTTCTTCTTHH
T ss_pred             HHHHHHHHCcCChhHH
Confidence            9999999999876543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.03  E-value=1.2e-09  Score=64.04  Aligned_cols=78  Identities=10%  Similarity=-0.094  Sum_probs=56.0

Q ss_pred             hhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~   74 (90)
                      +.++|.+|..    .+++++|+.+|+++.+..+.       ...+..++++|.+|..    .+++++|+.+|+++++. |
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~  159 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSES-------DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S  159 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS-------HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC-------cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C
Confidence            4566666666    66777777777777665331       0114456889999988    88899999999999887 5


Q ss_pred             CChHHHHHHHHHHh
Q psy8498          75 MKASTFCCIVVKEG   88 (90)
Q Consensus        75 ~~~~~~~~l~~~~~   88 (90)
                      .++.+++++|.+|.
T Consensus       160 ~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A          160 RTGYAEYWAGMMFQ  173 (212)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            66778888888774

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.02  E-value=1.9e-09  Score=69.90  Aligned_cols=77  Identities=10%  Similarity=-0.051  Sum_probs=61.8

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC---hHHHHH
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK---ASTFCC   82 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~   82 (90)
                      ...|+|++|+..+++++++....-++. +.....+++++|.+|..+|+|++|+.++++++++     .|++   +..+.+
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDS-NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChh-chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            456899999999999999987753332 3344667899999999999999999999999976     2344   455889


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.+|.
T Consensus       388 La~~~~  393 (433)
T 3qww_A          388 LGRLYM  393 (433)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.99  E-value=8.5e-09  Score=58.34  Aligned_cols=71  Identities=21%  Similarity=0.120  Sum_probs=59.6

Q ss_pred             hhHHHHHHhhC---CHHHHHHHHHHHHHHH-HhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498           4 DNVELSSDKSF---SYTVAENCFMEALSKV-KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         4 ~~l~~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      .++|.++.+..   +..+++..+++.++.. |..        ...+++++|..+.++|+|++|++++++++++.|++..+
T Consensus        36 F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~--------~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           36 FEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE--------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH--------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc--------hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            57788888877   6669999999999976 521        15567999999999999999999999999999998877


Q ss_pred             HHH
Q psy8498          80 FCC   82 (90)
Q Consensus        80 ~~~   82 (90)
                      ..-
T Consensus       108 ~~L  110 (152)
T 1pc2_A          108 KEL  110 (152)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.98  E-value=2e-09  Score=65.75  Aligned_cols=60  Identities=15%  Similarity=0.005  Sum_probs=49.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      +..+|..+...|++++|+..|+++++..|+.         +..+..+|.++..+|++++|+..+++++.
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~la~~~~~~g~~~~A~~~l~~~~~  179 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQN---------GEIGLLLAETLIALNRSEDAEAVLXTIPL  179 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---------HHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---------hhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence            4578899999999999999999999998877         44568888888888888887766666543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.98  E-value=2.4e-09  Score=65.39  Aligned_cols=86  Identities=13%  Similarity=-0.097  Sum_probs=62.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh---------------CCC----------cchhhHHHHHHhHHHHHHHhc
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL---------------GGE----------IIADKWEPLLNNLGHVNRKLK   57 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~----------~~~~~~~~~~~~lg~~~~~~g   57 (90)
                      +.++|.++...|++++|+..++++++..|+.               ...          .........++++|.++...|
T Consensus       154 ~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g  233 (287)
T 3qou_A          154 GLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVG  233 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence            4678888888888888888877765433211               000          000011445699999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHh
Q psy8498          58 KYEEALEFHKQALVVAPMK--ASTFCCIVVKEG   88 (90)
Q Consensus        58 ~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~   88 (90)
                      ++++|++.|+++++.+|++  +.++..++.++.
T Consensus       234 ~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~  266 (287)
T 3qou_A          234 RNEEALELLFGHLRXDLTAADGQTRXTFQEILA  266 (287)
T ss_dssp             CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            9999999999999999987  778888888764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.97  E-value=7.2e-09  Score=64.52  Aligned_cols=83  Identities=8%  Similarity=-0.199  Sum_probs=66.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC--------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP--------   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------   74 (90)
                      +.++|.++...|++++|+.++++++++.+..+..   .....++.++|.++..+|++++|+.++++++.+.+        
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  132 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  132 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence            5678999999999999999999999999887443   12234568999999999999999999999998753        


Q ss_pred             CChHHHHHHHHHHh
Q psy8498          75 MKASTFCCIVVKEG   88 (90)
Q Consensus        75 ~~~~~~~~l~~~~~   88 (90)
                      ....++.++|.++.
T Consensus       133 ~~~~~~~~la~~~~  146 (373)
T 1hz4_A          133 MHEFLVRIRAQLLW  146 (373)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            23445667777654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.94  E-value=3e-08  Score=61.68  Aligned_cols=84  Identities=11%  Similarity=-0.052  Sum_probs=66.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----h
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-----A   77 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~   77 (90)
                      +.++|.++...|++++|+.+|++++++.+..+.... ......+.++|.++...|++++|..++++++.+.+..     .
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL-PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS-THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            467899999999999999999999999987643211 1224456889999999999999999999999987742     2


Q ss_pred             HHHHHHHHHH
Q psy8498          78 STFCCIVVKE   87 (90)
Q Consensus        78 ~~~~~l~~~~   87 (90)
                      .++..+|.++
T Consensus       175 ~~~~~la~~~  184 (373)
T 1hz4_A          175 QCLAMLIQCS  184 (373)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3455666654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.94  E-value=1.2e-08  Score=61.17  Aligned_cols=72  Identities=13%  Similarity=0.011  Sum_probs=37.3

Q ss_pred             hhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~   74 (90)
                      +.++|.++..    .+++++|+.+|+++++..  .         +..++++|.++..    .+++++|+.+|+++++.. 
T Consensus        41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-  108 (273)
T 1ouv_A           41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y---------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-  108 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C---------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-
Confidence            3455566665    666666666666665541  1         2233555555555    555555555555555442 


Q ss_pred             CChHHHHHHHHHH
Q psy8498          75 MKASTFCCIVVKE   87 (90)
Q Consensus        75 ~~~~~~~~l~~~~   87 (90)
                       ++.++..+|.++
T Consensus       109 -~~~a~~~lg~~~  120 (273)
T 1ouv_A          109 -YAEGCASLGGIY  120 (273)
T ss_dssp             -CHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHH
Confidence             444455555444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.91  E-value=1.9e-08  Score=52.49  Aligned_cols=65  Identities=12%  Similarity=-0.041  Sum_probs=55.4

Q ss_pred             hhhHHHHHHhhCC---HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           3 LDNVELSSDKSFS---YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      +..+|.++...++   .++|..++++++++.|+.         ......+|..+++.|+|++|+.+++++++.+|..
T Consensus         9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---------EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3456677755555   799999999999999887         5666899999999999999999999999999873

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.91  E-value=6.3e-09  Score=60.98  Aligned_cols=71  Identities=15%  Similarity=0.017  Sum_probs=42.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc----CHHHHHHHHHHHHhhCCCChH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK----KYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~   78 (90)
                      +.++|.+|...+++++|+.+|+++.+..  .         +..++++|.+|.. +    ++++|+.+|+++.+  +.++.
T Consensus        21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~---------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~   86 (212)
T 3rjv_A           21 QYYLADTWVSSGDYQKAEYWAQKAAAQG--D---------GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKS   86 (212)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcC--C---------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHH
Confidence            4567777777788888888888776531  1         2233555555555 4    55555555555533  23455


Q ss_pred             HHHHHHHHH
Q psy8498          79 TFCCIVVKE   87 (90)
Q Consensus        79 ~~~~l~~~~   87 (90)
                      +++++|.++
T Consensus        87 a~~~Lg~~y   95 (212)
T 3rjv_A           87 GEIVLARVL   95 (212)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.89  E-value=6.9e-09  Score=63.63  Aligned_cols=76  Identities=8%  Similarity=0.014  Sum_probs=54.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|...|++++++.|..     ..   .++.++|.++.+.|++++|...|+++++.+|.....+..
T Consensus       102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  173 (308)
T 2ond_A          102 YFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PT---LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  173 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----TH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccccC-----cc---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4567888888888888888888888865543     11   134778888888888888888888888877766666554


Q ss_pred             HHHH
Q psy8498          83 IVVK   86 (90)
Q Consensus        83 l~~~   86 (90)
                      .+.+
T Consensus       174 ~a~~  177 (308)
T 2ond_A          174 AALM  177 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.87  E-value=1e-08  Score=58.22  Aligned_cols=86  Identities=13%  Similarity=-0.048  Sum_probs=63.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHH---------------hhCCC----------cchhhHHHHHHhHHHHHHHhc
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVK---------------QLGGE----------IIADKWEPLLNNLGHVNRKLK   57 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~----------~~~~~~~~~~~~lg~~~~~~g   57 (90)
                      +.++|.++...|++++|+..|+++++..|               .....          ...+.....+.++|.++...|
T Consensus        43 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g  122 (176)
T 2r5s_A           43 KLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVG  122 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence            56788888899999999888887755432               00000          000111445689999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHh
Q psy8498          58 KYEEALEFHKQALVVAPMK--ASTFCCIVVKEG   88 (90)
Q Consensus        58 ~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~   88 (90)
                      ++++|+..|+++++.+|..  +.++..+|.++.
T Consensus       123 ~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~  155 (176)
T 2r5s_A          123 RDEEALELLWNILKVNLGAQDGEVKKTFMDILS  155 (176)
T ss_dssp             CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence            9999999999999999865  558888888764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.86  E-value=1.7e-08  Score=61.85  Aligned_cols=76  Identities=13%  Similarity=0.104  Sum_probs=62.3

Q ss_pred             hhhHHHHHH-------hhCCH-------HHHHHHHHHHHH-HHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498           3 LDNVELSSD-------KSFSY-------TVAENCFMEALS-KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK   67 (90)
Q Consensus         3 ~~~l~~~~~-------~~g~~-------~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   67 (90)
                      +.+.|..+.       ..|++       ++|...|++|++ +.|+.         ...+.++|.++...|++++|...|+
T Consensus        53 w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---------~~~~~~~~~~~~~~~~~~~A~~~~~  123 (308)
T 2ond_A           53 WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------MLLYFAYADYEESRMKYEKVHSIYN  123 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            445666654       35885       999999999999 66655         3345999999999999999999999


Q ss_pred             HHHhhCCCChH-HHHHHHHHH
Q psy8498          68 QALVVAPMKAS-TFCCIVVKE   87 (90)
Q Consensus        68 ~al~~~~~~~~-~~~~l~~~~   87 (90)
                      ++++++|.++. ++..+|.++
T Consensus       124 ~al~~~p~~~~~~~~~~~~~~  144 (308)
T 2ond_A          124 RLLAIEDIDPTLVYIQYMKFA  144 (308)
T ss_dssp             HHHTSSSSCTHHHHHHHHHHH
T ss_pred             HHHhccccCccHHHHHHHHHH
Confidence            99999998886 788887765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.82  E-value=2.2e-08  Score=52.20  Aligned_cols=47  Identities=13%  Similarity=0.023  Sum_probs=43.2

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      +..++++|.++..+|++++|+.+|+++++++|.++.++..+|.++..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   53 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER   53 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            44569999999999999999999999999999999999999998864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.80  E-value=2.1e-08  Score=64.91  Aligned_cols=80  Identities=10%  Similarity=-0.048  Sum_probs=62.5

Q ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC---hHHH
Q psy8498           9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK---ASTF   80 (90)
Q Consensus         9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~   80 (90)
                      -+..+|+|++|+..+++++++....-++. +.....+++++|.+|..+|+|++|+.++++++++     .|++   +..+
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDI-NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTT-SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCcc-chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            35578999999999999998765542222 3344667899999999999999999999999976     2444   4557


Q ss_pred             HHHHHHHhc
Q psy8498          81 CCIVVKEGV   89 (90)
Q Consensus        81 ~~l~~~~~~   89 (90)
                      +++|.+|..
T Consensus       375 ~nLa~~~~~  383 (429)
T 3qwp_A          375 MKVGKLQLH  383 (429)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            889988753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.76  E-value=6.3e-08  Score=59.73  Aligned_cols=75  Identities=13%  Similarity=0.004  Sum_probs=57.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      ..++|.++...|++++|+.+|++++.. +..  +   .......+++|.+++++|+.++|...|++++..+|. +.+...
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~--P---~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a  246 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDS-PAG--E---ACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA  246 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTS-TTT--T---TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcC-CCC--c---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence            457899999999999999999998742 110  1   101335588999999999999999999999999998 666555


Q ss_pred             HH
Q psy8498          83 IV   84 (90)
Q Consensus        83 l~   84 (90)
                      +.
T Consensus       247 L~  248 (282)
T 4f3v_A          247 LK  248 (282)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.74  E-value=1.4e-07  Score=51.98  Aligned_cols=70  Identities=13%  Similarity=0.032  Sum_probs=54.8

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      +|.+|...+..++|+.+|+++.+.  ..         +..++++|.+|..    .+++++|+.+|++|.+.  .++.+.+
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~---------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~   97 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NS---------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCL   97 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TC---------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CC---------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHH
Confidence            778888888888888888888875  11         4455888888888    78888888888888776  4677888


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      ++|.+|.
T Consensus        98 ~Lg~~y~  104 (138)
T 1klx_A           98 ILGYKQY  104 (138)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.72  E-value=1.5e-07  Score=51.94  Aligned_cols=70  Identities=10%  Similarity=-0.020  Sum_probs=57.7

Q ss_pred             chhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhC
Q psy8498           2 DLDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVA   73 (90)
Q Consensus         2 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   73 (90)
                      +..++|.+|..    .+++++|+.+|+++.+.  ..         +..++++|.+|..    .+++++|+.+|++|.+..
T Consensus        59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~---------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--ND---------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CC---------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            35789999998    89999999999999875  11         4456999999999    999999999999999874


Q ss_pred             CCChHHHHHHH
Q psy8498          74 PMKASTFCCIV   84 (90)
Q Consensus        74 ~~~~~~~~~l~   84 (90)
                        ++.+..+++
T Consensus       128 --~~~A~~~l~  136 (138)
T 1klx_A          128 --SEDACGILN  136 (138)
T ss_dssp             --CHHHHHHC-
T ss_pred             --CHHHHHHHh
Confidence              456665554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.66  E-value=1.1e-07  Score=49.36  Aligned_cols=46  Identities=15%  Similarity=0.091  Sum_probs=42.4

Q ss_pred             HHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      ..+.++|.++...|++++|+++|+++++++|.++.++.++|.++..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   50 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK   50 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999999998754

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.59  E-value=1.1e-07  Score=61.38  Aligned_cols=72  Identities=7%  Similarity=0.010  Sum_probs=46.1

Q ss_pred             hhhHHHHHHhhC---CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh----cCHHHHHHHHHHHHhhCCC
Q psy8498           3 LDNVELSSDKSF---SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL----KKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         3 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~   75 (90)
                      +.++|.+|...|   ++++|+.+|+++.+..+..         +..++++|.+|...    +++++|+.+|+++.   |.
T Consensus       179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g  246 (452)
T 3e4b_A          179 YVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG  246 (452)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG
T ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC
Confidence            467888888888   8888888888887754332         22335566665444    45666666666654   55


Q ss_pred             ChHHHHHHHHH
Q psy8498          76 KASTFCCIVVK   86 (90)
Q Consensus        76 ~~~~~~~l~~~   86 (90)
                      ++.+++++|.+
T Consensus       247 ~~~a~~~Lg~~  257 (452)
T 3e4b_A          247 YPASWVSLAQL  257 (452)
T ss_dssp             STHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            55555555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.59  E-value=2.6e-07  Score=58.27  Aligned_cols=69  Identities=13%  Similarity=0.024  Sum_probs=55.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ..++|.+|...|+|++|..++++++.......+.   .....++..+|.+|..+|++++|..++++++.+.+
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            4578999999999999999999998887666443   22345678899999999999999999999987753

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.54  E-value=1.1e-07  Score=61.51  Aligned_cols=73  Identities=12%  Similarity=-0.050  Sum_probs=52.2

Q ss_pred             hhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~   74 (90)
                      +.++|.+|..    .+++++|+.+|+++.+..  .         +..++++|.+|..    .+++++|..+|+++++..|
T Consensus       366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L---------SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C---------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            4567777777    778888888888777631  1         3345888888888    7888888888888888874


Q ss_pred             C---ChHHHHHHHHH
Q psy8498          75 M---KASTFCCIVVK   86 (90)
Q Consensus        75 ~---~~~~~~~l~~~   86 (90)
                      +   ++.+..++|.+
T Consensus       435 ~~~~~~~a~~~l~~~  449 (490)
T 2xm6_A          435 NLFGTENRNITEKKL  449 (490)
T ss_dssp             CHHHHHHHHHHHTTS
T ss_pred             CCcCCHHHHHHHHhc
Confidence            3   66666666543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.54  E-value=6e-07  Score=44.99  Aligned_cols=47  Identities=26%  Similarity=0.311  Sum_probs=42.5

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      ...+..+|.++...|++++|+.+|+++++++|.++.++..+|.++..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   55 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   55 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999988753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.53  E-value=5.7e-07  Score=59.97  Aligned_cols=77  Identities=8%  Similarity=0.016  Sum_probs=66.4

Q ss_pred             hhhHHHHHHhhCC----------HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc--CHHHHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFS----------YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK--KYEEALEFHKQAL   70 (90)
Q Consensus         3 ~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al   70 (90)
                      ++.-+.++...|+          +++++..+.++++..|+.     ...|    +..+.++.+.|  +++++++++.+++
T Consensus        66 W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-----y~aW----~hR~w~l~~l~~~~~~~el~~~~k~l  136 (567)
T 1dce_A           66 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTW----HHRCWLLSRLPEPNWARELELCARFL  136 (567)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHH----HHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----HHHH----HHHHHHHHHcccccHHHHHHHHHHHH
Confidence            4566777888888          999999999999998887     4555    88999999999  7799999999999


Q ss_pred             hhCCCChHHHHHHHHHHh
Q psy8498          71 VVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        71 ~~~~~~~~~~~~l~~~~~   88 (90)
                      +++|.+..++...+.+..
T Consensus       137 ~~d~~N~~aW~~R~~~l~  154 (567)
T 1dce_A          137 EADERNFHCWDYRRFVAA  154 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHH
T ss_pred             hhccccccHHHHHHHHHH
Confidence            999999999988887754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.52  E-value=3e-07  Score=56.70  Aligned_cols=79  Identities=9%  Similarity=-0.146  Sum_probs=57.0

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC--CC-ChHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--PM-KASTF   80 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~   80 (90)
                      ..+|.++.+.++|++|+.+|+++.+..+.       ..-..+++++|.++..+|++++|+++|++++.-.  |. .+.+.
T Consensus       139 ~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~  211 (282)
T 4f3v_A          139 WMKAVVYGAAERWTDVIDQVKSAGKWPDK-------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIA  211 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTGGGCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhccCCc-------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHH
Confidence            45677788888888888888755442100       0002356899999999999999999999998544  54 55678


Q ss_pred             HHHHHHHhc
Q psy8498          81 CCIVVKEGV   89 (90)
Q Consensus        81 ~~l~~~~~~   89 (90)
                      +..|.++..
T Consensus       212 ~~~glaL~~  220 (282)
T 4f3v_A          212 WYLAMARRS  220 (282)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888753

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.50  E-value=1e-06  Score=57.03  Aligned_cols=72  Identities=15%  Similarity=-0.029  Sum_probs=42.2

Q ss_pred             hhHHHHHHhhC---CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCC
Q psy8498           4 DNVELSSDKSF---SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         4 ~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~   76 (90)
                      .++|.+|...|   ++++|+.+|+++++.  ..         +..++++|.+|..    .+++++|+.+|+++++..  +
T Consensus       332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~---------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~  398 (490)
T 2xm6_A          332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE---------KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L  398 (490)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred             HHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC---------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C
Confidence            34445544433   455555555555543  11         3344777777777    677777777777776653  4


Q ss_pred             hHHHHHHHHHHh
Q psy8498          77 ASTFCCIVVKEG   88 (90)
Q Consensus        77 ~~~~~~l~~~~~   88 (90)
                      +.++.++|.++.
T Consensus       399 ~~a~~~Lg~~y~  410 (490)
T 2xm6_A          399 SAAQVQLGEIYY  410 (490)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666777776653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.50  E-value=7.1e-07  Score=57.66  Aligned_cols=69  Identities=6%  Similarity=-0.166  Sum_probs=37.3

Q ss_pred             hhHHHH-H--HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-----CHHHHHHHHHHHHhhCCC
Q psy8498           4 DNVELS-S--DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----KYEEALEFHKQALVVAPM   75 (90)
Q Consensus         4 ~~l~~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~   75 (90)
                      .++|.+ +  ...+++++|+.+|+++.+..  .         +..++++|.+|. .|     ++++|+.+|+++.   +.
T Consensus       252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~---------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g  316 (452)
T 3e4b_A          252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD--Q---------PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR  316 (452)
T ss_dssp             HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--C---------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC
Confidence            455555 3  34556666666666655321  1         233455666655 44     6666666666655   55


Q ss_pred             ChHHHHHHHHHH
Q psy8498          76 KASTFCCIVVKE   87 (90)
Q Consensus        76 ~~~~~~~l~~~~   87 (90)
                      ++.+++++|.+|
T Consensus       317 ~~~A~~~Lg~~y  328 (452)
T 3e4b_A          317 EVAADYYLGQIY  328 (452)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            556666666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.50  E-value=1.6e-06  Score=54.66  Aligned_cols=86  Identities=9%  Similarity=-0.057  Sum_probs=59.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-------------------------------------cchhhHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE-------------------------------------IIADKWEPL   45 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------------~~~~~~~~~   45 (90)
                      +.++|.+|...|++++|.++++++++..+..+..                                     .....+..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            5677777777777777777777777665543210                                     001223566


Q ss_pred             HHhHHHHHHHhcCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHh
Q psy8498          46 LNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIVVKEG   88 (90)
Q Consensus        46 ~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~   88 (90)
                      +.++|.++...|+|++|+.++++++...      +....++..+|.++.
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH  186 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            7899999999999999999999998762      223455666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.46  E-value=6.3e-07  Score=59.76  Aligned_cols=77  Identities=9%  Similarity=-0.019  Sum_probs=68.5

Q ss_pred             hhhHHHHHHhhC--CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhCCCChHH
Q psy8498           3 LDNVELSSDKSF--SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      +.+-+.++...+  ++++++.++.++++..|++     ...|    +..+.+..+.| .+++++++++++++.+|++..+
T Consensus       110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-----~~aW----~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa  180 (567)
T 1dce_A          110 WHHRCWLLSRLPEPNWARELELCARFLEADERN-----FHCW----DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (567)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-----HHHH----HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-----ccHH----HHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence            556678888899  7799999999999999887     4445    99999999999 9999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      +...+.+..
T Consensus       181 W~~r~~ll~  189 (567)
T 1dce_A          181 WHYRSCLLP  189 (567)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.43  E-value=1.9e-06  Score=56.16  Aligned_cols=87  Identities=16%  Similarity=0.074  Sum_probs=63.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh--------CCC---------cchhhHHHHHHhHHHHHHHhcCHHHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL--------GGE---------IIADKWEPLLNNLGHVNRKLKKYEEALE   64 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~---------~~~~~~~~~~~~lg~~~~~~g~~~~A~~   64 (90)
                      .+..+|.++.+.|+|++|++.|+++.+...=.        .++         .. ...+.-...+..+|.+.|++++|+.
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~ad~l~~lv~~Yek~G~~eEai~  228 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADELEELINYYQDRGYFEELIT  228 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTT-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHH-HhCHhhHHHHHHHHHHCCCHHHHHH
Confidence            35688999999999999999999994321000        000         00 0001112446689999999999999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498          65 FHKQALVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        65 ~~~~al~~~~~~~~~~~~l~~~~~~   89 (90)
                      ++++++.+++.+...+..+|.+++.
T Consensus       229 lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          229 MLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            9999999999999999999988763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.40  E-value=2.8e-06  Score=46.59  Aligned_cols=70  Identities=20%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             hhHHHHHHhhCCHHH---HHHHHHHHHHHH-HhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498           4 DNVELSSDKSFSYTV---AENCFMEALSKV-KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~---A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      .++|.++....+...   ++..++..++.. |        .....+++.+|..++++|+|++|+++.+..|++.|.+..+
T Consensus        39 F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--------~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA  110 (126)
T 1nzn_A           39 FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--------chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            355666666666655   666666666543 2        1225577999999999999999999999999999988776


Q ss_pred             HH
Q psy8498          80 FC   81 (90)
Q Consensus        80 ~~   81 (90)
                      ..
T Consensus       111 ~~  112 (126)
T 1nzn_A          111 KE  112 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.40  E-value=1.7e-05  Score=45.34  Aligned_cols=70  Identities=11%  Similarity=-0.147  Sum_probs=55.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      +..-...+...+.|+.|+.....++.+.+...+.........++..+|.+++..|+|..|...|++||+.
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            3445566778999999999999999987665432223344556789999999999999999999999865

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.40  E-value=1.5e-06  Score=56.76  Aligned_cols=76  Identities=13%  Similarity=0.092  Sum_probs=59.3

Q ss_pred             hhhHHHHHHh-------hCCHH-------HHHHHHHHHHH-HHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498           3 LDNVELSSDK-------SFSYT-------VAENCFMEALS-KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK   67 (90)
Q Consensus         3 ~~~l~~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   67 (90)
                      +.+.|..+..       .|+++       +|...|++|++ +.|+.         ..++..+|.++.+.|++++|...|+
T Consensus       275 w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---------~~l~~~~~~~~~~~g~~~~A~~~~~  345 (530)
T 2ooe_A          275 WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------MLLYFAYADYEESRMKYEKVHSIYN  345 (530)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3455666664       79987       89999999997 55544         3445899999999999999999999


Q ss_pred             HHHhhCCCCh-HHHHHHHHHH
Q psy8498          68 QALVVAPMKA-STFCCIVVKE   87 (90)
Q Consensus        68 ~al~~~~~~~-~~~~~l~~~~   87 (90)
                      ++++++|.++ .++...+.++
T Consensus       346 ~al~~~p~~~~~~~~~~~~~~  366 (530)
T 2ooe_A          346 RLLAIEDIDPTLVYIQYMKFA  366 (530)
T ss_dssp             HHHHSSSSCHHHHHHHHHHHH
T ss_pred             HHhCccccCchHHHHHHHHHH
Confidence            9999999875 4677766543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.39  E-value=1.8e-06  Score=56.35  Aligned_cols=71  Identities=8%  Similarity=0.018  Sum_probs=48.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      +.++|.++...|++++|...|++++++.|..     .   ..++..+|.++.+.|++++|.+.|++|++..|.....+.
T Consensus       324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~  394 (530)
T 2ooe_A          324 YFAYADYEESRMKYEKVHSIYNRLLAIEDID-----P---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV  394 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhCccccC-----c---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHH
Confidence            4567788888999999999999999865432     1   123466677777777777777777777766665444443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.38  E-value=3.4e-06  Score=52.49  Aligned_cols=77  Identities=6%  Similarity=-0.145  Sum_probs=63.9

Q ss_pred             hhhHHHHHHhhC--CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHH----HHh---cCHHHHHHHHHHHHhhC
Q psy8498           3 LDNVELSSDKSF--SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVN----RKL---KKYEEALEFHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~~~   73 (90)
                      ++.-+.++...+  ++++++.++.+++...|+.     ...|    +..+.++    ...   +++++++.++.++++.+
T Consensus        70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-----y~aW----~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~  140 (306)
T 3dra_A           70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-----YQIW----NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD  140 (306)
T ss_dssp             HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-----CHHH----HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-----HHHH----HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC
Confidence            455677888888  9999999999999998877     5555    7778887    666   78899999999999999


Q ss_pred             CCChHHHHHHHHHHh
Q psy8498          74 PMKASTFCCIVVKEG   88 (90)
Q Consensus        74 ~~~~~~~~~l~~~~~   88 (90)
                      |++..++...+.+..
T Consensus       141 pkny~aW~~R~~vl~  155 (306)
T 3dra_A          141 PKNHHVWSYRKWLVD  155 (306)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999888877654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.34  E-value=4.1e-06  Score=53.47  Aligned_cols=64  Identities=13%  Similarity=-0.081  Sum_probs=54.1

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS   78 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   78 (90)
                      .++..+...|++++|+..+++|+.+.+    .      +..+..+|.++...|++++|++.|++|+.++|..+.
T Consensus       282 alal~~l~~gd~d~A~~~l~rAl~Ln~----s------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          282 IKAVSALVKGKTDESYQAINTGIDLEM----S------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCC----C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCC----C------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            356677778999999999999999952    1      334577899999999999999999999999997654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.34  E-value=3.1e-06  Score=52.66  Aligned_cols=77  Identities=13%  Similarity=0.085  Sum_probs=63.8

Q ss_pred             hhhHHHHHHhhCCHH--HHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC------HHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYT--VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK------YEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~~   74 (90)
                      +.+-+.+....|+++  +++.++.++++..+.+     ...|    ++.+.+....|+      ++++++++++++.++|
T Consensus       147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N-----~sAW----~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p  217 (306)
T 3dra_A          147 WSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN-----NSAW----SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP  217 (306)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC-----HHHH----HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC-----HHHH----HHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC
Confidence            445566777788887  8888888888887776     4444    888999999887      9999999999999999


Q ss_pred             CChHHHHHHHHHHh
Q psy8498          75 MKASTFCCIVVKEG   88 (90)
Q Consensus        75 ~~~~~~~~l~~~~~   88 (90)
                      ++..+++.++.++.
T Consensus       218 ~n~SaW~y~~~ll~  231 (306)
T 3dra_A          218 QNPSTWNYLLGIHE  231 (306)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHH
Confidence            99999988887764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.33  E-value=8.1e-07  Score=55.08  Aligned_cols=66  Identities=11%  Similarity=-0.064  Sum_probs=55.4

Q ss_pred             chhhHHHHHHhh-----CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhhCCC
Q psy8498           2 DLDNVELSSDKS-----FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         2 ~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~   75 (90)
                      ++.-+|.+|...     |+.++|+++|++|+++.|...        ..+...+|..++. +|+++++.+++++++..+|.
T Consensus       201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~--------id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD--------PDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC--------SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC--------chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            355689999985     999999999999999988532        2244778999988 59999999999999998875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.29  E-value=7.8e-06  Score=51.47  Aligned_cols=77  Identities=9%  Similarity=-0.025  Sum_probs=62.1

Q ss_pred             hhhHHHHHHhhC--CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCCCChHH
Q psy8498           3 LDNVELSSDKSF--SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~   79 (90)
                      +++-+.++...+  ++++++.++.++++..|.+     ...|    +..+.+....|. ++++++++.+++..+|+|..+
T Consensus       111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-----y~AW----~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA  181 (331)
T 3dss_A          111 WHHRCWLLSRLPEPNWARELELCARFLEADERN-----FHCW----DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  181 (331)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-----HHHH----HHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-----HHHH----HHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence            345566667777  4889999999999988877     4455    888888888888 689999999999999999999


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      +...+.+..
T Consensus       182 W~~R~~ll~  190 (331)
T 3dss_A          182 WHYRSCLLP  190 (331)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.24  E-value=5e-06  Score=42.43  Aligned_cols=42  Identities=12%  Similarity=-0.001  Sum_probs=39.3

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHh
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKAS-TFCCIVVKEG   88 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~   88 (90)
                      .+.|.++...|++++|+..|+++++.+|.++. ++..+|.++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~   46 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR   46 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999 9999999875

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.24  E-value=5.1e-06  Score=51.56  Aligned_cols=68  Identities=9%  Similarity=-0.082  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-----cCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHH
Q psy8498          14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-----KKYEEALEFHKQALVVAPMK-ASTFCCIVVKE   87 (90)
Q Consensus        14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~   87 (90)
                      +....|...+++++++.|..     ..  -..+..+|.+|...     |+.++|..+|++|++++|+. ..+++..|..+
T Consensus       177 ~~l~~A~a~lerAleLDP~~-----~~--GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l  249 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSY-----QE--GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADAL  249 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTH-----HH--HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHHhCCCc-----cc--CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence            34567889999999998874     11  33568999999995     99999999999999999964 88877777655


Q ss_pred             h
Q psy8498          88 G   88 (90)
Q Consensus        88 ~   88 (90)
                      +
T Consensus       250 ~  250 (301)
T 3u64_A          250 C  250 (301)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.22  E-value=1.3e-05  Score=50.40  Aligned_cols=75  Identities=11%  Similarity=0.057  Sum_probs=63.0

Q ss_pred             hhhHHHHHHhhCC-HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh--------------cCHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFS-YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL--------------KKYEEALEFHK   67 (90)
Q Consensus         3 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~   67 (90)
                      +.+-+.+....|. +++++.++.++++..|.+     ...|    ++.+.++...              +.++++++++.
T Consensus       147 W~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N-----~SAW----~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~  217 (331)
T 3dss_A          147 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-----YSSW----HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ  217 (331)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC-----HHHH----HHHHHHHHHHSCCC------CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC-----HHHH----HHHHHHHHHhhhccccccccccchHHHHHHHHHHH
Confidence            4566778888888 699999999999998877     4444    9999999888              67999999999


Q ss_pred             HHHhhCCCChHHHHHHHHH
Q psy8498          68 QALVVAPMKASTFCCIVVK   86 (90)
Q Consensus        68 ~al~~~~~~~~~~~~l~~~   86 (90)
                      +++.++|++..+++.+..+
T Consensus       218 ~ai~~~P~d~SaW~Y~r~l  236 (331)
T 3dss_A          218 NAFFTDPNDQSAWFYHRWL  236 (331)
T ss_dssp             HHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHH
Confidence            9999999999998755443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.18  E-value=7.6e-06  Score=59.76  Aligned_cols=73  Identities=8%  Similarity=-0.010  Sum_probs=57.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.++...|++++|+.+|.+|     ++         +..+.+.|.++.+.|++++|++++++|.+..+. +..-.
T Consensus      1107 vWsqLAKAql~~G~~kEAIdsYiKA-----dD---------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt 1171 (1630)
T 1xi4_A         1107 VWSQLAKAQLQKGMVKEAIDSYIKA-----DD---------PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVET 1171 (1630)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhc-----CC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccH
Confidence            3678999999999999999999886     22         344588999999999999999999999988742 22233


Q ss_pred             HHHHHHhc
Q psy8498          82 CIVVKEGV   89 (90)
Q Consensus        82 ~l~~~~~~   89 (90)
                      .+|.+|+.
T Consensus      1172 ~LafaYAK 1179 (1630)
T 1xi4_A         1172 ELIFALAK 1179 (1630)
T ss_pred             HHHHHHHh
Confidence            46666553

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.11  E-value=3.1e-05  Score=42.77  Aligned_cols=69  Identities=13%  Similarity=0.028  Sum_probs=50.7

Q ss_pred             hHHHHHHhhCC---HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           5 NVELSSDKSFS---YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         5 ~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      +.+-++....+   ..+++..++..++..|.        ....+++.+|..++++|+|++|+++.+..+++.|++..+..
T Consensus        45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~--------~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           45 NYAWGLIKSTDVNDERLGVKILTDIYKEAES--------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            44444444343   34677778777765432        22556799999999999999999999999999998877653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.10  E-value=1.1e-05  Score=51.08  Aligned_cols=69  Identities=10%  Similarity=-0.030  Sum_probs=38.1

Q ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498           9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVAPMKASTFCCIVVK   86 (90)
Q Consensus         9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~   86 (90)
                      +.......++|+.++.+++.+.|+.     .+.|    +..+.++..+| .++++++++++++..+|++..++...+.+
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~-----ytaW----n~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl  132 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAH-----YTVW----QYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL  132 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTC-----HHHH----HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchh-----HHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3344444455666666666665555     3333    55555555555 36666666666666666665555555444

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.09  E-value=2.5e-05  Score=49.48  Aligned_cols=77  Identities=9%  Similarity=-0.022  Sum_probs=67.3

Q ss_pred             hhhHHHHHHhhC-CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-c-CHHHHHHHHHHHHhhCCCChHH
Q psy8498           3 LDNVELSSDKSF-SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-K-KYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      ++.-+.++...| ++++++.++.++++..|+.     ...|    +..+.++... + +++++++++.++++.+|++..+
T Consensus        91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-----y~aW----~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~A  161 (349)
T 3q7a_A           91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-----YQVW----HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHT  161 (349)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-----HHHH----HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-----HHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHH
Confidence            455677888888 5999999999999988877     5555    9999999998 8 9999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy8498          80 FCCIVVKEG   88 (90)
Q Consensus        80 ~~~l~~~~~   88 (90)
                      +...+.+..
T Consensus       162 W~~R~wvl~  170 (349)
T 3q7a_A          162 WAYLHWLYS  170 (349)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998887754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.07  E-value=2.4e-05  Score=57.27  Aligned_cols=86  Identities=15%  Similarity=0.056  Sum_probs=61.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh--------CCC-------cc-hhhHHHHHHhHHHHHHHhcCHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL--------GGE-------II-ADKWEPLLNNLGHVNRKLKKYEEALEFH   66 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-------~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~   66 (90)
                      +..+|.++.+.|++++|++.+++|.+...=.        .++       .. -...+..+..++..|.+.|.|++|++++
T Consensus      1224 y~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A         1224 FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5567778888888888888888775543200        000       00 0001223467888999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHh
Q psy8498          67 KQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        67 ~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      ++++.+++.+...+..+|.+++
T Consensus      1304 E~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A         1304 EAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred             HHHhccChhHhHHHHHHHHHHH
Confidence            9999999988888888888775

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.06  E-value=5.1e-05  Score=43.43  Aligned_cols=83  Identities=14%  Similarity=0.021  Sum_probs=58.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc-----------------chhhHHHHHHhHHHHHHHhcCHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI-----------------IADKWEPLLNNLGHVNRKLKKYEEALEF   65 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~   65 (90)
                      +..+|.++...++|.+|+..|++|+..........                 .... ..+.+.++.||.++|++++|+..
T Consensus        66 l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e-~Elkykia~C~~~l~~~~~Ai~~  144 (167)
T 3ffl_A           66 LVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSE-IEVKYKLAECYTVLKQDKDAIAI  144 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccch-HHHHHHHHHHHHHHCCHHHHHHH
Confidence            46789999999999999999999998877431110                 0000 13558899999999999999998


Q ss_pred             HHHHHhhCCCChHHHHHHHHHH
Q psy8498          66 HKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        66 ~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      .+.. ......+.....+|..|
T Consensus       145 Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          145 LDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HhcC-CchhcCHHHHHHHHHHh
Confidence            6652 22224555555666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.04  E-value=1.8e-05  Score=49.38  Aligned_cols=64  Identities=8%  Similarity=-0.146  Sum_probs=52.7

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      .-+|.++...|++++|++++.+.+...|..       ....+...++.++.++|+.+.|.+.+++..+.+|
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAE-------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            467999999999999999999987654310       1134457789999999999999999999999988

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.00  E-value=1.2e-05  Score=52.55  Aligned_cols=62  Identities=15%  Similarity=0.194  Sum_probs=39.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ++.++|..+...|.|++|..+|.++             ..|    ..+|.++.++|++++|++.|+++     .++.++.
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------------~n~----~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk  181 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-------------SNF----GRLASTLVHLGEYQAAVDGARKA-----NSTRTWK  181 (449)
T ss_dssp             -------------CTTTHHHHHHHT-------------TCH----HHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-------------hhH----HHHHHHHHHhccHHHHHHHHHHc-----CCchhHH
Confidence            4678999999999999999999966             123    88999999999999999999999     2455554


Q ss_pred             HHHH
Q psy8498          82 CIVV   85 (90)
Q Consensus        82 ~l~~   85 (90)
                      .+..
T Consensus       182 ~v~~  185 (449)
T 1b89_A          182 EVCF  185 (449)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.85  E-value=0.00046  Score=38.56  Aligned_cols=68  Identities=13%  Similarity=0.037  Sum_probs=49.9

Q ss_pred             hHHHHHHhhCCHH---HHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498           5 NVELSSDKSFSYT---VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus         5 ~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      +.+.++....+.+   +++..++..++..|.        ....+++.+|..++++|+|++|.++.+..|++.|.+..+.
T Consensus        44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           44 NYAWGLIKSTDVNDERLGVKILTDIYKEAES--------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--------THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            4444444444443   577777777764321        2255779999999999999999999999999999887664

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.76  E-value=0.00032  Score=46.43  Aligned_cols=76  Identities=11%  Similarity=-0.032  Sum_probs=64.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|.+..-...++.|..+|++|..+.|..     +.    .++.||.+....|+.-+|+-+|.+++......+.+..+
T Consensus       155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-----G~----~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~n  225 (497)
T 1ya0_A          155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSN-----GQ----PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN  225 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-----SH----HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-----Cc----hHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHH
Confidence            4678888888899999999999999999988     33    34999999999999999999999999876667777777


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +....
T Consensus       226 L~~~f  230 (497)
T 1ya0_A          226 LQKAL  230 (497)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.60  E-value=0.00031  Score=36.22  Aligned_cols=46  Identities=20%  Similarity=0.142  Sum_probs=39.7

Q ss_pred             HHHHHhHHHHHHHhcC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          43 EPLLNNLGHVNRKLKK---YEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      +..+..+|.++...++   .++|...++++++++|+++.++..+|..+.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~   54 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF   54 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH
Confidence            3455889999987666   799999999999999999999999998764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.58  E-value=0.00038  Score=43.48  Aligned_cols=70  Identities=10%  Similarity=-0.100  Sum_probs=54.2

Q ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhhCCCc-chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498           9 SSDKSFSYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus         9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      ++..+|++++|+..++.+++..|..+... ....-+.++.|+..+...+|+  +|.++++++.+.+|+++-..
T Consensus       220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence            78999999999999998888877631110 001115566789999999998  99999999999999988654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.56  E-value=0.00046  Score=35.94  Aligned_cols=45  Identities=20%  Similarity=0.015  Sum_probs=37.0

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHhc
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVA-------PMKASTFCCIVVKEGV   89 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~   89 (90)
                      -++.+|..++..|+|+.|+.+|++|++..       +..+.++..+|.++..
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~   58 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ   58 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH
Confidence            45889999999999999999999999863       2346678888888753

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.34  E-value=0.004  Score=39.89  Aligned_cols=74  Identities=7%  Similarity=-0.084  Sum_probs=51.8

Q ss_pred             CCHHHHHHHHHHHHHHHHhhCC------------------C-----------------cchhhHHHHHHhHHHHHHHhcC
Q psy8498          14 FSYTVAENCFMEALSKVKQLGG------------------E-----------------IIADKWEPLLNNLGHVNRKLKK   58 (90)
Q Consensus        14 g~~~~A~~~~~~al~~~~~~~~------------------~-----------------~~~~~~~~~~~~lg~~~~~~g~   58 (90)
                      .++.+|+.+|++|+++.|+...                  .                 .....-+.++..++..+...|+
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd  292 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK  292 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence            3457899999999999887510                  0                 0001112234456777778899


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          59 YEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      +++|+..+++|+.++|+ ..++..+|.++.
T Consensus       293 ~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~  321 (372)
T 3ly7_A          293 TDESYQAINTGIDLEMS-WLNYVLLGKVYE  321 (372)
T ss_dssp             HHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence            99999999999999974 566677777664

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.23  E-value=0.00077  Score=38.04  Aligned_cols=47  Identities=6%  Similarity=-0.023  Sum_probs=39.7

Q ss_pred             HHHHHhHHHHHHHhc---CHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHhc
Q psy8498          43 EPLLNNLGHVNRKLK---KYEEALEFHKQALVVA-P-MKASTFCCIVVKEGV   89 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-~-~~~~~~~~l~~~~~~   89 (90)
                      ..+.+++|+++.+.+   +.++++.+++..++.+ | .+...++++|..+..
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k   83 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   83 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Confidence            345599999999988   7779999999999998 7 568889999988754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.02  E-value=0.0015  Score=45.24  Aligned_cols=54  Identities=19%  Similarity=0.116  Sum_probs=46.5

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA   69 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   69 (90)
                      +..+...|+|+-|+++.++|....|..     ...|    ..|+.+|.++|+|+.|+-...-+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPse-----F~tW----~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDS-----FESW----YNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSC-----HHHH----HHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchh-----hHHH----HHHHHHHHHhccHHHHHHHHhcC
Confidence            555677899999999999999999877     6667    99999999999999999755443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.66  E-value=0.0063  Score=40.32  Aligned_cols=44  Identities=16%  Similarity=0.298  Sum_probs=40.6

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG   88 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   88 (90)
                      ++..+|.+.+-...++.|..+|.+|..+.|.++.++..+|.+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~  197 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh
Confidence            56789999999999999999999999999999999999998764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.44  E-value=0.017  Score=36.86  Aligned_cols=59  Identities=10%  Similarity=-0.081  Sum_probs=49.9

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ..++..+...|++++++..+.+++...|-.         +..+..+-.++...|+..+|++.|+++..
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~---------E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPYR---------EPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345677888999999999999999887766         44557888899999999999999999764

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.062  Score=37.46  Aligned_cols=46  Identities=17%  Similarity=0.025  Sum_probs=41.6

Q ss_pred             HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Q psy8498          45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL   90 (90)
Q Consensus        45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~   90 (90)
                      .+.-.+..+...|+++-|+.+.++|+...|.+..+|..++.||..|
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l  384 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKK  384 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh
Confidence            4566688888999999999999999999999999999999999764

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.31  E-value=0.083  Score=34.09  Aligned_cols=66  Identities=15%  Similarity=-0.009  Sum_probs=54.3

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      ++|..|...|+|.+|.+.+.+.++-....++.   .....++.....+|..+|++.++...+.+|....
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~---~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDK---NLLVEVQLLESKTYHALSNLPKARAALTSARTTA  169 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence            68999999999999999999999887765432   2334456777889999999999999999998653

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.00  E-value=0.032  Score=31.63  Aligned_cols=58  Identities=9%  Similarity=0.049  Sum_probs=48.4

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      ...+|.++|...|+.++++.+..         +.++...|.+-.++|+...|.....+|+-+.|...
T Consensus        71 ~ei~D~d~aR~vy~~a~~~hKkF---------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           71 KAIQEPDDARDYFQMARANCKKF---------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHHHCGGGCHHHHHHHHHHCTTB---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHhcCHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            45689999999999999972221         55568899999999999999999999999988543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.83  E-value=0.0096  Score=32.54  Aligned_cols=31  Identities=13%  Similarity=-0.005  Sum_probs=28.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      +..+|+.+.+.|+|++|.++++..+++.|.+
T Consensus        77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            3468999999999999999999999998876

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.022  Score=38.07  Aligned_cols=70  Identities=13%  Similarity=0.007  Sum_probs=53.7

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      +-+-..|...+.|+.|..+..++.  +|....  ....+...++.+|.++.-+++|.+|.+++.+|+...|.+.
T Consensus       235 nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~--sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          235 NLILRDFLNNGEVDSASDFISKLE--YPHTDV--SSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHSSCSTTHHHHHHHHC--SCTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHHHHHHHccCcHHHHHHHHhcCc--CCcccC--CHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            344667888999999999988874  443311  1234456678899999999999999999999999887543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.097  Score=33.86  Aligned_cols=65  Identities=11%  Similarity=-0.100  Sum_probs=50.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ....+|..|.+.|++++|.++|.++...-...  .    ....++..+-.++...+++..+..++.++..+
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~--~----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIST--G----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC--C----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--H----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            34578999999999999999999987754332  1    11344566777888899999999999998755

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.62  E-value=0.18  Score=33.26  Aligned_cols=61  Identities=8%  Similarity=-0.149  Sum_probs=36.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ++.+-..|.+.|++++|..+|++..+.    +..+.    ..+++.+=..|.+.|+.++|.+.|++..+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAF----GIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHT----TCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            344556677777777777777765432    11111    33446666666666777777766666554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.52  E-value=0.13  Score=29.20  Aligned_cols=71  Identities=8%  Similarity=0.062  Sum_probs=49.0

Q ss_pred             HHHHhhCCH------HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498           8 LSSDKSFSY------TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus         8 ~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      ...-+.|+.      ++-.+.|++|+...|-.. ...-+.++.++.+.|.. ...++.++|.+.|+.++.+..+.+..+
T Consensus        21 ~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiw   97 (161)
T 4h7y_A           21 LKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVH   97 (161)
T ss_dssp             HHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHH
T ss_pred             HHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHH
Confidence            334455888      888899999999887763 21122233345667755 677999999999999998855543333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.36  E-value=0.098  Score=35.44  Aligned_cols=68  Identities=10%  Similarity=-0.010  Sum_probs=41.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHH------HhhCCCcchhhHHHH------HHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKV------KQLGGEIIADKWEPL------LNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~------~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      +.++|..+.+.++++.|+++|.++-+..      ...++..........      +.....++.+.|++++|+++|.+.-
T Consensus       684 W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          684 WRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            5689999999999999999999853222      211111000000000      1223446777899999988887743

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.29  E-value=0.12  Score=33.92  Aligned_cols=56  Identities=5%  Similarity=-0.123  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.....|++++...|..     ...|    ...+..+...|+.+.|...|++|+.. |.+...+..
T Consensus       196 ~Rv~~~ye~al~~~p~~-----~~lW----~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~  251 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYA-----EEVY----FFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY  251 (493)
T ss_dssp             HHHHHHHHHHHHHTTTC-----HHHH----HHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred             HHHHHHHHHHHHcCCCC-----HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            44567888888877655     3444    88899999999999999999999999 977655443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.20  E-value=0.12  Score=35.50  Aligned_cols=52  Identities=6%  Similarity=-0.081  Sum_probs=42.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498          14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus        14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ++++.|...|+++++..|..     ...|    ...+......|+.+.|...|++|+...|
T Consensus       484 ~d~e~Ar~ife~~Lk~~p~~-----~~~w----~~y~~fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYFATD-----GEYI----NKYLDFLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             SCCHHHHHHHHHHHHHHTTC-----HHHH----HHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             CCHHHHHHHHHHHHHHCCCc-----hHHH----HHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            45888999999999887765     2333    6777788889999999999999998876

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.17  E-value=0.4  Score=34.95  Aligned_cols=75  Identities=7%  Similarity=-0.075  Sum_probs=54.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh-CCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh--CCCChHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL-GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--APMKAST   79 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~   79 (90)
                      ++-+-..|.+.|+.++|..+|.+.-+..... ..+      ..+|+.+=..|++.|+.++|.+.|++..+.  .| +..+
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvT  202 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT------LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLS  202 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHH
Confidence            4556678999999999999998866543322 222      456799999999999999999999998754  34 4455


Q ss_pred             HHHHH
Q psy8498          80 FCCIV   84 (90)
Q Consensus        80 ~~~l~   84 (90)
                      |..+-
T Consensus       203 YntLI  207 (1134)
T 3spa_A          203 YAAAL  207 (1134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.05  E-value=0.22  Score=30.69  Aligned_cols=60  Identities=15%  Similarity=0.001  Sum_probs=51.3

Q ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498           9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus         9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      ...+.|+.++|+...+..++..|.+     ...    -..+-.+++-.|+|+.|..-.+.+.+++|+..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~d-----a~~----R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKD-----ASL----RSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTC-----HHH----HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcC-----HHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            4567899999999999999988877     333    37788999999999999999999999999654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.05  E-value=0.51  Score=32.47  Aligned_cols=80  Identities=3%  Similarity=0.015  Sum_probs=52.2

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh-------CCCc------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL-------GGEI------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ..+......|++++|...|+++++..+..       .+..      .......++...+.+..+.|..+.|...|.+|++
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45666778899999999999999875311       0000      0001122347777888888999999999999987


Q ss_pred             h-CCCChHHHHHHH
Q psy8498          72 V-APMKASTFCCIV   84 (90)
Q Consensus        72 ~-~~~~~~~~~~l~   84 (90)
                      . .+.....+...+
T Consensus       463 ~~~~~~~~lyi~~A  476 (679)
T 4e6h_A          463 LKKLVTPDIYLENA  476 (679)
T ss_dssp             TGGGSCTHHHHHHH
T ss_pred             hcCCCChHHHHHHH
Confidence            7 333344444333

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.86  E-value=0.25  Score=28.91  Aligned_cols=68  Identities=15%  Similarity=0.065  Sum_probs=48.2

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHH--HHHhhCCC------cc-hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           7 ELSSDKSFSYTVAENCFMEALS--KVKQLGGE------II-ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~------~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ..+|....+|..|+.+.++.++  +.++.+-+      .. ....+--++-+|.++...|+.++|+.+|.++....|
T Consensus        69 ~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A           69 SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence            5678889999999999999883  32221000      00 011122357789999999999999999999988776

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.16  Score=29.28  Aligned_cols=68  Identities=10%  Similarity=-0.055  Sum_probs=44.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh------CCCcchhhHHHH------HHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL------GGEIIADKWEPL------LNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~------~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      +..+|......|+++-|+++|+++-+...-.      ++.........+      ++....++..+|+++++++.|.++=
T Consensus        37 Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           37 WERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence            6788999999999999999999876554431      111000000000      1333566778999999999887743

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.65  E-value=0.25  Score=32.58  Aligned_cols=62  Identities=13%  Similarity=0.012  Sum_probs=48.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ++.+-..|.+.|+.++|.++|++..+.  ...++      ..+++.+-..+.+.|+.++|.+.+++....
T Consensus       143 yn~lI~~~~~~g~~~~A~~l~~~M~~~--G~~Pd------~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          143 YGPALFGFCRKGDADKAYEVDAHMVES--EVVPE------EPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT--TCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ehHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCC------HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            445666789999999999999988653  11112      456799999999999999999999997654

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=94.34  E-value=0.39  Score=29.38  Aligned_cols=53  Identities=17%  Similarity=0.070  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV   71 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   71 (90)
                      +.|...|++|+++. .. -++.++.......|.+.+|++ +++.++|....++|..
T Consensus       173 e~a~~aY~~A~~iA-~~-L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  226 (260)
T 2npm_A          173 EDALKAYKDATVVA-KD-LEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE  226 (260)
T ss_dssp             HHHHHHHHHHHHHH-TT-SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-Hh-CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46888999999998 43 222234444455778888887 8999999999999885

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=94.24  E-value=0.48  Score=28.42  Aligned_cols=59  Identities=8%  Similarity=0.048  Sum_probs=43.4

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhh
Q psy8498          13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVV   72 (90)
Q Consensus        13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~   72 (90)
                      .|+-+.|...|++|.++....- ++.++.......|.+.+|++ +++.++|....++|+.+
T Consensus       138 ~g~~e~a~~aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~  197 (227)
T 2o8p_A          138 LCSLEDSKKIHQDAFTLLCEHP-DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI  197 (227)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCG-GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhC-CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4557889999999999987642 22233333445677777776 89999999999999764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.01  E-value=0.034  Score=30.68  Aligned_cols=30  Identities=10%  Similarity=0.063  Sum_probs=27.5

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .-+|+.+.+.|+|++|.++.+..+++.|.+
T Consensus        82 YyLAvg~yklgdY~~Ar~y~d~lL~~eP~N  111 (134)
T 3o48_A           82 YYLTIGCYKLGEYSMAKRYVDTLFEHERNN  111 (134)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence            468999999999999999999999998876

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.88  E-value=0.22  Score=36.06  Aligned_cols=69  Identities=19%  Similarity=0.016  Sum_probs=50.2

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCC--------------CcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGG--------------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      +|.++...|++++|..+|+++-........              ..........|..+..++.+.|.++.+++..+.|++
T Consensus       848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~  927 (1139)
T 4fhn_B          848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA  927 (1139)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            689999999999999999987432211100              000112244567788899999999999999999998


Q ss_pred             hCC
Q psy8498          72 VAP   74 (90)
Q Consensus        72 ~~~   74 (90)
                      ..+
T Consensus       928 ~~~  930 (1139)
T 4fhn_B          928 SKE  930 (1139)
T ss_dssp             HCC
T ss_pred             hcc
Confidence            765

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.47  E-value=0.048  Score=30.45  Aligned_cols=30  Identities=10%  Similarity=0.063  Sum_probs=27.4

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ..+|+.+.+.|+|++|.++.+..+++.|.+
T Consensus        81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            468999999999999999999999998876

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=93.45  E-value=0.18  Score=25.43  Aligned_cols=29  Identities=17%  Similarity=0.099  Sum_probs=20.4

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQ   32 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~   32 (90)
                      ..-|+-....|+|++|+.+|+++++..-.
T Consensus        23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           23 AINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34456677778888888888887776554

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=93.41  E-value=0.16  Score=25.39  Aligned_cols=29  Identities=10%  Similarity=0.091  Sum_probs=25.7

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .+|.=|...|+|+.|+.+|+.+++...+.
T Consensus        17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~   45 (78)
T 2rpa_A           17 KLAREYALLGNYDSAMVYYQGVLDQMNKY   45 (78)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999887775

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.35  E-value=0.23  Score=28.62  Aligned_cols=46  Identities=9%  Similarity=-0.109  Sum_probs=33.4

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      .+.|+++.|.+..++.       +.   ...|    ..+|......|+++-|.++|+++-
T Consensus        16 L~lg~l~~A~e~a~~l-------~~---~~~W----k~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-------ND---SITW----ERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-------CC---HHHH----HHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHHh-------CC---HHHH----HHHHHHHHHcCChHHHHHHHHHhC
Confidence            3466766666654432       11   2445    999999999999999999999864

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=93.26  E-value=0.27  Score=25.40  Aligned_cols=29  Identities=24%  Similarity=0.229  Sum_probs=24.6

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      +..+...+..+.+.|+|++|+++.++|..
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa~   43 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKATT   43 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            44567788999999999999999998874

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=93.07  E-value=0.22  Score=25.04  Aligned_cols=29  Identities=17%  Similarity=0.157  Sum_probs=22.2

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQ   32 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~   32 (90)
                      ..-|+-..+.|+|++|+.+|+++++.+-.
T Consensus        15 v~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A           15 AILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34466678888888888888888887654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.86  E-value=1.2  Score=28.92  Aligned_cols=65  Identities=14%  Similarity=-0.029  Sum_probs=46.7

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ...+|...+|+.+|...+.++........+.  .......+.-.|..+...++|.+|-++|.++...
T Consensus       183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~--~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          183 QMELSILKGDYSQATVLSRKILKKTFKNPKY--ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhhcccCCc--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            3556777888888888888875433333222  2333445677899999999999999999999864

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=92.71  E-value=0.48  Score=30.70  Aligned_cols=49  Identities=29%  Similarity=0.194  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498          19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus        19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ++.+|.+|+......=.+.  .  .-.|..+|-.+++.+++.+|++.+..|-.
T Consensus       276 ~l~L~~~AI~sa~~yY~n~--H--vYPYtylgGy~yR~~~~reAl~~WA~Aa~  324 (472)
T 3re2_A          276 AEELFKEAITVAKREYSDH--H--IYPYTYLGGYYYRKKKYYEAIASWVDAGY  324 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTC--C--SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccC--C--ccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence            8899999999888763221  1  12357789999999999999999988764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.68  E-value=0.45  Score=33.93  Aligned_cols=69  Identities=19%  Similarity=0.038  Sum_probs=50.5

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC--------------cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGE--------------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      +|.+|...|++++|..+|++|-.-.......              .........|.....++.+.+.++.+++..+.|++
T Consensus       846 ~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~  925 (950)
T 4gq2_M          846 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA  925 (950)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            6999999999999999999876322111000              00111234678889999999999999999999997


Q ss_pred             hCC
Q psy8498          72 VAP   74 (90)
Q Consensus        72 ~~~   74 (90)
                      ...
T Consensus       926 ~~~  928 (950)
T 4gq2_M          926 SKE  928 (950)
T ss_dssp             TCC
T ss_pred             hcc
Confidence            653

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=92.46  E-value=1  Score=27.66  Aligned_cols=56  Identities=16%  Similarity=0.154  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHhhC-CCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhh
Q psy8498          17 TVAENCFMEALSKVKQLG-GEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVV   72 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~   72 (90)
                      +.|...|++|.++....- .++.++.......|.+.+|++ +++.++|....++|...
T Consensus       169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            568899999999986543 122334444455777888876 89999999999999865

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.32  E-value=0.6  Score=31.65  Aligned_cols=41  Identities=20%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498          23 FMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus        23 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      ++.|+++....+.   ...|    .++|..+.+.|+++.|.++|.++-
T Consensus       668 ~~~A~~~~~~~~~---~~~W----~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          668 LTLARDLLTDESA---EMKW----RALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHHHHHTTCCC---HHHH----HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhCc---HhHH----HHHHHHHHHcCCHHHHHHHHHHcc
Confidence            4445555544322   2344    899999999999999999999963

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=92.07  E-value=0.35  Score=24.47  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=23.4

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ..-|+-....|+|++|+.+|.++++..-..
T Consensus        20 v~~Ave~D~~g~y~eAl~lY~~Aie~ll~a   49 (86)
T 4a5x_A           20 LKRAVELDSESRYPQALVCYQEGIDLLLQV   49 (86)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            344666788899999999999999876543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.94  E-value=1.6  Score=27.87  Aligned_cols=73  Identities=5%  Similarity=-0.009  Sum_probs=51.3

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCC------cc-------hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGE------II-------ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~------~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      ...|+.+.|...+++|+.+....--.      +.       .+.+..+...++..+...|++++++...++.+..+|-+-
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E  205 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE  205 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            34689999999999999886432111      00       111223445668888999999999999999999999665


Q ss_pred             HHHHHH
Q psy8498          78 STFCCI   83 (90)
Q Consensus        78 ~~~~~l   83 (90)
                      ..+..+
T Consensus       206 ~~~~~l  211 (388)
T 2ff4_A          206 PLWTQL  211 (388)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.92  E-value=1.6  Score=28.14  Aligned_cols=64  Identities=9%  Similarity=0.051  Sum_probs=48.8

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHH-HhcCHHHHHHHHHHHHhh
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNR-KLKKYEEALEFHKQALVV   72 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~   72 (90)
                      ..+|...+++.++...+.+|.........+  ......+...-|..+. ..++|.+|..+|-++..-
T Consensus       146 ~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~--p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          146 SKTYHALSNLPKARAALTSARTTANAIYCP--PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhhccCCCC--HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            567889999999999999999887554233  1222334455688888 899999999999999753

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=91.61  E-value=0.41  Score=24.55  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=24.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      +...|+-....|+|++|+.+|..+++.+-..
T Consensus        18 lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a   48 (93)
T 1wfd_A           18 VLKRAVELDAESRYQQALVCYQEGIDMLLQV   48 (93)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            3455677888999999999999999887654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.53  E-value=1.8  Score=27.92  Aligned_cols=67  Identities=9%  Similarity=0.018  Sum_probs=49.6

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ++-.++...+++..+..+..++-......++.   ..........|..+...++|.+|..+|-.+.....
T Consensus       173 ~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~---~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          173 TIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW---ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT---HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH---HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            45567788999999999999998876655332   22223345567778889999999999999876543

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=91.26  E-value=0.82  Score=30.19  Aligned_cols=49  Identities=10%  Similarity=0.036  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498          19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus        19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ++.+|.+|+......=.+.  .  .-.|..+|-.+++.+++.+|+..+..+-.
T Consensus       298 ~~~L~~~AI~sa~~~Y~n~--H--vYPYtYlgGy~yR~~~~reAl~~WA~Aa~  346 (550)
T 3u84_A          298 PLTLYHKGIASAKTYYRDE--H--IYPYMYLAGYHCRNRNVREALQAWADTAT  346 (550)
T ss_dssp             HHHHHHHHHHHHHHHSTTC--C--SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccC--C--ccceeecchhhhhcchHHHHHHHHHHHHH
Confidence            7899999999888762221  1  12357789999999999999999988764

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=91.22  E-value=0.87  Score=29.98  Aligned_cols=49  Identities=10%  Similarity=0.036  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498          19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus        19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      ++.+|++|+......=.+.  .  .-.|..+|-.+++.+++.+|++++..+-.
T Consensus       283 ~~~Lf~~AI~~ar~~Y~~~--h--vYPYtYlgG~~~R~~~~~eAl~~wa~aa~  331 (489)
T 4gq4_A          283 PLTLYHKGIASAKTYYRDE--H--IYPYMYLAGYHCRNRNVREALQAWADTAT  331 (489)
T ss_dssp             HHHHHHHHHHHHHHHSTTC--C--SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccC--c--ccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence            7889999999888763221  1  22457789999999999999999998764

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=90.91  E-value=0.54  Score=23.52  Aligned_cols=29  Identities=14%  Similarity=0.177  Sum_probs=22.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQ   32 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~   32 (90)
                      ...|+-....|+|++|+.+|..+++..-.
T Consensus        17 ~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A           17 VQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34566677889999999999999987554

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=90.54  E-value=0.55  Score=25.18  Aligned_cols=30  Identities=17%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ...|+-....|+|++|+.+|..+++.+-..
T Consensus        22 v~~Ave~D~ag~y~eAl~lY~~Aie~l~~a   51 (117)
T 2cpt_A           22 ASKAAQEDKAGNYEEALQLYQHAVQYFLHV   51 (117)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            345666778899999999999999876543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.53  E-value=0.93  Score=22.73  Aligned_cols=23  Identities=30%  Similarity=0.183  Sum_probs=14.2

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          50 GHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        50 g~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      |.-.=+.|++++|+.+|.++++.
T Consensus        26 Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           26 AVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHH
Confidence            33334457777777777777643

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=89.87  E-value=0.95  Score=23.37  Aligned_cols=29  Identities=14%  Similarity=0.046  Sum_probs=23.6

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ..+..+...|+|++|+++.++|.....+-
T Consensus        20 RrAe~ll~~gkydeAIech~kAa~yL~eA   48 (97)
T 2crb_A           20 RRADRLLAAGKYEEAISCHRKATTYLSEA   48 (97)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            34566788999999999999999776654

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=89.72  E-value=0.29  Score=24.13  Aligned_cols=29  Identities=10%  Similarity=0.000  Sum_probs=21.7

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .+|-.+...|++++|..+|-+|+...+..
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP   50 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP   50 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence            46777777888888888888888776554

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=89.39  E-value=2.3  Score=25.57  Aligned_cols=54  Identities=13%  Similarity=-0.060  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV   71 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   71 (90)
                      +.|...|++|+++....-++ .++.......|.+.+|++ +++.++|....++|..
T Consensus       147 e~a~~aY~~A~~iA~~~L~p-thPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd  201 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPP-THPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  201 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46888999999998754222 233333445777888887 8999999999999874

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=89.28  E-value=0.56  Score=24.30  Aligned_cols=30  Identities=10%  Similarity=-0.042  Sum_probs=22.8

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      ..+|-.+...|+++.|+.+|-+|+.+.+..
T Consensus        24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP   53 (95)
T 1om2_A           24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP   53 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence            356777778888888888888888876654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=89.19  E-value=2.4  Score=27.81  Aligned_cols=60  Identities=8%  Similarity=0.034  Sum_probs=40.6

Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhCCCChHH
Q psy8498          10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVAPMKAST   79 (90)
Q Consensus        10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~   79 (90)
                      ..+.++.+.|...|++| + .|.    ..    ..++...|.+-...+ +.+.|...|+++++..|+.+..
T Consensus       296 ~~r~~~~~~AR~i~~~A-~-~~~----~~----~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~  356 (493)
T 2uy1_A          296 VLKKRGLELFRKLFIEL-G-NEG----VG----PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL  356 (493)
T ss_dssp             HHHHHCHHHHHHHHHHH-T-TSC----CC----HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHh-h-CCC----CC----hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence            34567788888888888 2 221    11    223355566666666 5999999999999988876654

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=89.19  E-value=2.1  Score=24.92  Aligned_cols=35  Identities=11%  Similarity=0.033  Sum_probs=30.8

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      ....+.+|..+.-.++|.+|.+++.+|+...|...
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~   48 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS   48 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence            45568899999999999999999999999988654

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=88.89  E-value=1.3  Score=22.11  Aligned_cols=17  Identities=35%  Similarity=0.466  Sum_probs=10.1

Q ss_pred             HhcCHHHHHHHHHHHHh
Q psy8498          55 KLKKYEEALEFHKQALV   71 (90)
Q Consensus        55 ~~g~~~~A~~~~~~al~   71 (90)
                      +.|++++|+.+|.++++
T Consensus        23 ~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A           23 KEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHH
Confidence            34666666666666654

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=88.64  E-value=1.4  Score=22.24  Aligned_cols=25  Identities=12%  Similarity=0.107  Sum_probs=16.2

Q ss_pred             hHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          48 NLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        48 ~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ..|.-.-..|++++|+.+|.++++.
T Consensus        21 ~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           21 KRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3344445567777888888777754

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=87.73  E-value=1.5  Score=21.50  Aligned_cols=29  Identities=21%  Similarity=0.257  Sum_probs=25.2

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      ..+|..+...|++++|..+|-+|+...|+
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            44788888899999999999999999874

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=87.17  E-value=1.8  Score=22.04  Aligned_cols=21  Identities=14%  Similarity=0.140  Sum_probs=12.1

Q ss_pred             HHHHHhcCHHHHHHHHHHHHh
Q psy8498          51 HVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus        51 ~~~~~~g~~~~A~~~~~~al~   71 (90)
                      .-.-..|+|++|+.+|.++++
T Consensus        23 ve~D~~g~y~eAl~~Y~~Aie   43 (93)
T 1wfd_A           23 VELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHH
Confidence            333345666666666666664

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=87.14  E-value=3.4  Score=24.89  Aligned_cols=54  Identities=19%  Similarity=0.114  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV   71 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   71 (90)
                      +.|...|++|.++....-++ .++.......|.+.+|++ +++.++|....++|..
T Consensus       150 e~a~~aY~~A~~iA~~~L~p-thPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd  204 (236)
T 3iqu_A          150 DSARSAYQEAMDISKKEMPP-TNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56888999999998754332 223333445677777776 7999999999888874

>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A

Probab=87.05  E-value=2.6  Score=27.53  Aligned_cols=71  Identities=18%  Similarity=0.020  Sum_probs=45.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC--------------cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE--------------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ   68 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   68 (90)
                      ++.|+..+...++|.+|--++....++..=....              .........+......+.+.+.|+.|+..|+.
T Consensus        38 l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k~  117 (436)
T 2yin_A           38 LYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKE  117 (436)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3677888999999999988874432221111000              00111223456667777888899999999999


Q ss_pred             HHhhC
Q psy8498          69 ALVVA   73 (90)
Q Consensus        69 al~~~   73 (90)
                      .+...
T Consensus       118 L~~~y  122 (436)
T 2yin_A          118 LAEQY  122 (436)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88654

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=86.80  E-value=3.8  Score=25.06  Aligned_cols=54  Identities=15%  Similarity=0.007  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV   71 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   71 (90)
                      +.|...|++|.++....-++ .++.......|.+.+|+. +++.++|....++|..
T Consensus       152 e~a~~aY~~A~~iA~~~L~p-thPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  206 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAP-THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  206 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            46888999999998754222 233333445777888887 7999999999998874

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=86.38  E-value=4  Score=24.97  Aligned_cols=54  Identities=13%  Similarity=-0.060  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV   71 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   71 (90)
                      +.|...|++|.++....-++ .++.......|.+.+|++ +++.++|....++|..
T Consensus       173 e~a~~aY~~A~~iA~~~L~p-ThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd  227 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPP-THPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  227 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56889999999988654332 223333445777888887 7999999999888874

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=86.14  E-value=1.1  Score=23.12  Aligned_cols=29  Identities=21%  Similarity=0.257  Sum_probs=21.8

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      ..+|..+...|+++.|+.+|-+|+...|+
T Consensus        24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q   52 (95)
T 1om2_A           24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            34677777788888888888888877653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.64  E-value=5.6  Score=25.89  Aligned_cols=63  Identities=8%  Similarity=-0.031  Sum_probs=46.9

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      .++.+|...|++.+|...++....--...  .. .......+.....++...+++.+|...++++.
T Consensus       142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~-~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~  204 (445)
T 4b4t_P          142 DLVEIKKEEGKIDEAADILCELQVETYGS--ME-MSEKIQFILEQMELSILKGDYSQATVLSRKIL  204 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhc--cc-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            57899999999999999998876422111  11 12223455778889999999999999999975

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=85.60  E-value=4.4  Score=24.63  Aligned_cols=54  Identities=19%  Similarity=0.039  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV   71 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   71 (90)
                      +.|...|++|.++....-++ .++.......|.+.+|+. +++.++|....++|..
T Consensus       148 ~~a~~aY~~A~~iA~~~L~p-thPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd  202 (248)
T 3uzd_A          148 ESSEKAYSEAHEISKEHMQP-THPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD  202 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56888999999998754332 233333445677888777 8999999999888874

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=85.59  E-value=1.7  Score=28.68  Aligned_cols=72  Identities=13%  Similarity=-0.031  Sum_probs=50.2

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh-CCC-cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-CCCC
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL-GGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-APMK   76 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~   76 (90)
                      +++=.+|.+.++..-+...++.. +..... ..+ .....+...++.+|..+.-.++|.+|.+++.+|+.. .|..
T Consensus       180 n~L~kiYFkl~~~~lckni~k~i-~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          180 NKLNNIYFRIESPQLCSNIFKNF-QPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHSSCCTTHHHHHHTH-HHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh-ccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            34557788999988888777443 332110 001 112234556788999999999999999999999998 7754

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=85.56  E-value=2.2  Score=21.20  Aligned_cols=19  Identities=26%  Similarity=0.214  Sum_probs=12.3

Q ss_pred             HHhcCHHHHHHHHHHHHhh
Q psy8498          54 RKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        54 ~~~g~~~~A~~~~~~al~~   72 (90)
                      -..|++++|+.+|.++++.
T Consensus        24 D~~g~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A           24 DTATQYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            3456777777777776653

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=85.52  E-value=2.3  Score=22.70  Aligned_cols=16  Identities=38%  Similarity=0.559  Sum_probs=9.8

Q ss_pred             hcCHHHHHHHHHHHHh
Q psy8498          56 LKKYEEALEFHKQALV   71 (90)
Q Consensus        56 ~g~~~~A~~~~~~al~   71 (90)
                      .|+|++|+.+|.++++
T Consensus        31 ag~y~eAl~lY~~Aie   46 (117)
T 2cpt_A           31 AGNYEEALQLYQHAVQ   46 (117)
T ss_dssp             HTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH
Confidence            4666666666666654

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=85.30  E-value=1  Score=22.41  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=22.7

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ..+|.=+...|+|+.|+.+|+.+++.
T Consensus        16 ~k~ARe~Al~GnYdta~~yY~g~~~q   41 (78)
T 2rpa_A           16 VKLAREYALLGNYDSAMVYYQGVLDQ   41 (78)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            55788888999999999999999863

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=84.43  E-value=5  Score=29.58  Aligned_cols=62  Identities=6%  Similarity=-0.113  Sum_probs=46.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVV   72 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~   72 (90)
                      ++-+-..|.+.|+.++|.++|++..+..  ..++      ..+|+.+=.++++.|+ .++|.+.+++...-
T Consensus       168 YNtLI~Glck~G~~~eA~~Lf~eM~~~G--~~PD------vvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          168 YNAVMLGWARQGAFKELVYVLFMVKDAG--LTPD------LLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTT--CCCC------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCc------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            4455667899999999999999886431  1122      4567888889999998 47888999987754

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=84.24  E-value=1.8  Score=25.22  Aligned_cols=29  Identities=14%  Similarity=0.050  Sum_probs=25.9

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      -+|..+...++|.+|.+++..|++..+..
T Consensus        19 YlGr~~~~~~~y~~A~~~L~~A~~~~~~~   47 (203)
T 3t5x_A           19 YVGRKAMFDSDFKQAEEYLSFAFEHCHRS   47 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence            47999999999999999999999987654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=83.55  E-value=4.3  Score=22.90  Aligned_cols=32  Identities=13%  Similarity=0.143  Sum_probs=27.9

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ++.+..+|.+|.+.|+..+|-+...+|.+-..
T Consensus       125 ~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A          125 ASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            55668999999999999999999999987543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=82.29  E-value=5.6  Score=23.33  Aligned_cols=72  Identities=8%  Similarity=-0.025  Sum_probs=50.6

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh--------CC--C--------------c-----------chh----hHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQL--------GG--E--------------I-----------IAD----KWEP   44 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~--~--------------~-----------~~~----~~~~   44 (90)
                      ..+|.++.+.|+-++|+.+|.....+.+-.        .+  +              .           .++    ....
T Consensus       118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ik  197 (242)
T 3kae_A          118 SLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVK  197 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHH
Confidence            457999999999999999999988765432        00  0              0           000    0000


Q ss_pred             ------------HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498          45 ------------LLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus        45 ------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                                  ...+.+..+..+|-.+++.++|.+....+|.
T Consensus       198 kY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          198 KYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence                        0134478899999999999999999998885

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=81.42  E-value=4.9  Score=22.75  Aligned_cols=65  Identities=8%  Similarity=0.031  Sum_probs=45.2

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhH-HHHH-HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKW-EPLL-NNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      -|..+...|+|-+|=+.++.+.+..+....+  ...+ -.+. ...|..+.+.|+...|...+.+++..
T Consensus        38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~e--r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~  104 (161)
T 2ijq_A           38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTE--SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY  104 (161)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHH--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4667788899999999999988865332111  1122 1123 44566777789999999999999863

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.09  E-value=5.1  Score=21.45  Aligned_cols=18  Identities=17%  Similarity=0.021  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy8498          14 FSYTVAENCFMEALSKVK   31 (90)
Q Consensus        14 g~~~~A~~~~~~al~~~~   31 (90)
                      ..|++|..+..+||++.+
T Consensus        17 ~~h~~AF~~Is~AL~~DE   34 (116)
T 2dl1_A           17 EAYKKAFLFVNKGLNTDE   34 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            445666666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.003
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 8e-04
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 19  AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
           A   + +AL          +  ++    +NL  V ++  K +EAL  +K+A+ ++P
Sbjct: 324 AVRLYRKALE---------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 9/59 (15%)

Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
          +  AE   M+                   +L  L  ++ + ++ + +  F   A+   P
Sbjct: 15 FEAAERHCMQLWR---------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (74), Expect = 0.002
 Identities = 7/46 (15%), Positives = 21/46 (45%)

Query: 38  IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
           ++     +  NL  V  +    + A++ +++A+ + P     +C +
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 32.9 bits (73), Expect = 0.003
 Identities = 7/37 (18%), Positives = 11/37 (29%)

Query: 38  IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
           +A+        LG     L   + A    K A+    
Sbjct: 204 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 32.6 bits (72), Expect = 0.004
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 3/59 (5%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
           +  AE    E     + L    +       L  L  +  +  +  +A      AL +A 
Sbjct: 267 FEPAEIVLEELNENARSLR---LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.72
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.68
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.66
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.63
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.62
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.6
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.57
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.55
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.55
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.54
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.48
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.45
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.45
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.45
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.45
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.44
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.43
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.41
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.39
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.37
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.31
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.29
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.29
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.17
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.08
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.06
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.02
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.97
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.83
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.81
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.79
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.74
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.65
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.61
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.38
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.04
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.87
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.77
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.72
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.62
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.6
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.39
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	94.38
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.74
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	93.0
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	92.87
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	92.62
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	92.4
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	90.97
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	88.55
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	88.47
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	88.19
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	86.24
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	86.1

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-19  Score=94.44  Aligned_cols=85  Identities=14%  Similarity=0.030  Sum_probs=75.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      ..++|.++.+.|+|++|+.+|++|+++.|......  ...+.+++++|.++.++|++++|+++|+++++++|+++.++.+
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            45899999999999999999999999999874442  2335678999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      ++.+...
T Consensus        86 l~~~~~~   92 (95)
T d1tjca_          86 LKYFEYI   92 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.4e-17  Score=94.16  Aligned_cols=79  Identities=15%  Similarity=0.106  Sum_probs=73.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.+.|..+...|+|++|+.+|++|+++.|..         +.++.++|.+|.++|++++|+.+|++|++++|+++.++.+
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~---------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~   77 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   77 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH
Confidence            5678999999999999999999999998876         5667999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q psy8498          83 IVVKEGVL   90 (90)
Q Consensus        83 l~~~~~~~   90 (90)
                      +|.++..+
T Consensus        78 lg~~~~~l   85 (201)
T d2c2la1          78 LGQCQLEM   85 (201)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            99998653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2e-16  Score=84.73  Aligned_cols=78  Identities=15%  Similarity=0.074  Sum_probs=65.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.+.|..+...|+|++|+.+|++++++.|..         +..+.++|.++.++|++++|+..|++++.++|.++.++.+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   76 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR   76 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---------hhhhhcccccccccccccccchhhhhHHHhccchhhHHHH
Confidence            4567888888899999999999998887766         5556888888888888888888888888888888888888


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        77 ~g~~~~~   83 (117)
T d1elwa_          77 KAAALEF   83 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.68  E-value=3.7e-16  Score=83.12  Aligned_cols=77  Identities=18%  Similarity=0.091  Sum_probs=71.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      ..++|.++...|++++|+.+|+++++..|+.         +.++..+|.++.+.|++++|+.+|+++++++|.++.++..
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   89 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPER---------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   89 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccccccc---------chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHH
Confidence            3578999999999999999999999998876         5566999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus        90 la~~y~   95 (112)
T d1hxia_          90 LAVSHT   95 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999885

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.8e-16  Score=92.41  Aligned_cols=78  Identities=18%  Similarity=0.106  Sum_probs=72.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.+|...|++++|+..|++++++.|+.         +.+++++|.++.++|++++|+++|+++++++|.++.++.+
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  110 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIRPDM---------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  110 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---------HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHH
Confidence            5688999999999999999999999998776         5567999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       111 lg~~~~~  117 (259)
T d1xnfa_         111 RGIALYY  117 (259)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.7e-16  Score=85.93  Aligned_cols=78  Identities=13%  Similarity=0.009  Sum_probs=66.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +...|..+...|+|++|+.+|++++++.|..         +..++++|.++..+|++++|+.+|+++++++|+++.++..
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~   83 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSN---------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhh---------hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence            4566888899999999999999999987766         5556889999999999999999999999999988888888


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        84 ~g~~~~~   90 (159)
T d1a17a_          84 RAASNMA   90 (159)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.6e-16  Score=86.25  Aligned_cols=76  Identities=13%  Similarity=0.071  Sum_probs=66.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|..+...|+|++|+.+|.+++++.|..         +.++.++|.+|.++|+|++|+.+++++++++|.++.++..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~   77 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTN---------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence            4689999999999999999999999998766         5567999999999999999999999999999977765555


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|.++
T Consensus        78 ~a~~~   82 (128)
T d1elra_          78 IAKAY   82 (128)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-15  Score=80.88  Aligned_cols=78  Identities=13%  Similarity=-0.037  Sum_probs=71.7

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.+|...|++++|+..|.+++++.|..         +..++++|.++..+|++++|+.+|+++++++|+++.++.
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  109 (117)
T d1elwa_          39 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE  109 (117)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             hhhcccccccccccccccchhhhhHHHhccch---------hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            36789999999999999999999999998877         556699999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      .++.+.+
T Consensus       110 ~l~~l~~  116 (117)
T d1elwa_         110 GLQNMEA  116 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9888764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.64  E-value=1.3e-15  Score=84.78  Aligned_cols=77  Identities=21%  Similarity=0.052  Sum_probs=70.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|+|.+|..+|+|++|+.++++++++.|..         ..+++++|.++..+|++++|+.+|+++++++|+++.+...
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~---------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~  140 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS  140 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HhhHHHHHHHhcccchhhhhhhccccccchh---------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5689999999999999999999999998877         5677999999999999999999999999999999999888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++.+..
T Consensus       141 l~~~~~  146 (153)
T d2fbna1         141 YELCVN  146 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.1e-15  Score=85.28  Aligned_cols=77  Identities=17%  Similarity=0.113  Sum_probs=70.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|+|.+|.+.|+|++|+.++++++++.|..         +.++.++|.++..+|++++|+.+|+++++++|+++.+...
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~---------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~  135 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSNN---------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ  135 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhccccc---------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5689999999999999999999999998876         6667999999999999999999999999999999999888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++.+..
T Consensus       136 l~~~~~  141 (170)
T d1p5qa1         136 LAVCQQ  141 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.7e-15  Score=83.43  Aligned_cols=87  Identities=14%  Similarity=-0.032  Sum_probs=74.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcc------hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEII------ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      +.+.|..+...|+|++|+.+|++++++.+.......      ......++.++|.||.++|++++|+.++++++.++|.+
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~   95 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN   95 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc
Confidence            567899999999999999999999999887643211      12234567899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhc
Q psy8498          77 ASTFCCIVVKEGV   89 (90)
Q Consensus        77 ~~~~~~l~~~~~~   89 (90)
                      +.+++.+|.++..
T Consensus        96 ~~a~~~~g~~~~~  108 (170)
T d1p5qa1          96 EKGLSRRGEAHLA  108 (170)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHH
Confidence            9999999999864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=2.4e-15  Score=84.68  Aligned_cols=77  Identities=21%  Similarity=0.141  Sum_probs=70.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|+|.++...|+|++|+..|.+++++.|..         +.+++++|.++..+|++++|+.+|+++++++|++..+...
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---------~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhhhhh---------hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5789999999999999999999999998776         5667999999999999999999999999999999999888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++.+..
T Consensus       151 l~~~~~  156 (169)
T d1ihga1         151 LLKVKQ  156 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887754

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.60  E-value=5e-15  Score=83.43  Aligned_cols=77  Identities=22%  Similarity=0.179  Sum_probs=70.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.|+|.+|..+|+|++|+..+.+++++.|..         ..+++++|.++..+|++++|+.+|+++++++|+++.+...
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~---------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~  137 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSAN---------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ  137 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcccch---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5689999999999999999999999998876         5667999999999999999999999999999999999888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++.+..
T Consensus       138 l~~~~~  143 (168)
T d1kt1a1         138 IFMCQK  143 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-14  Score=80.79  Aligned_cols=78  Identities=17%  Similarity=0.014  Sum_probs=70.4

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.++..+|++++|+..|++++++.|..         ..++.++|.++..+|++++|+.+|++++.++|+++.++.
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~---------~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~  116 (159)
T d1a17a_          46 YYGNRSLAYLRTECYGYALGDATRAIELDKKY---------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM  116 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             hhhhhHHHHHhccccchHHHHHHHHHHHcccc---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            46799999999999999999999999998877         555699999999999999999999999999999999887


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      .++.+..
T Consensus       117 ~l~~~~~  123 (159)
T d1a17a_         117 KYQECNK  123 (159)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.57  E-value=1.7e-14  Score=80.18  Aligned_cols=87  Identities=15%  Similarity=-0.017  Sum_probs=73.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcch-------hhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIA-------DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +...|..+...|+|.+|+..|++++++.+........       .....++.|+|.+|.++|++++|+++++++++++|.
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~   99 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN   99 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence            4567999999999999999999999988766432111       112346789999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhc
Q psy8498          76 KASTFCCIVVKEGV   89 (90)
Q Consensus        76 ~~~~~~~l~~~~~~   89 (90)
                      +..+++.+|.++..
T Consensus       100 ~~ka~~~~g~~~~~  113 (153)
T d2fbna1         100 NVKALYKLGVANMY  113 (153)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHH
Confidence            99999999999864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.8e-14  Score=81.91  Aligned_cols=62  Identities=23%  Similarity=0.198  Sum_probs=39.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA   73 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   73 (90)
                      +.|+|.+|..+|++++|+.+|++|+++.|..         +..++++|.++.++|++++|++.|++|+...
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHHhhhh---------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            4566666666666666666666666665554         4444666666666666666666666666543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.55  E-value=6.1e-14  Score=78.88  Aligned_cols=88  Identities=16%  Similarity=0.041  Sum_probs=73.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      +...|..+...|+|.+|+.+|++|++..+......      .......++.|+|.||.++|++++|+.++++++.++|.+
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~   97 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN   97 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence            45679999999999999999999999876653221      122234567899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcC
Q psy8498          77 ASTFCCIVVKEGVL   90 (90)
Q Consensus        77 ~~~~~~l~~~~~~~   90 (90)
                      ..+++.+|.++..+
T Consensus        98 ~~a~~~~~~~~~~l  111 (168)
T d1kt1a1          98 EKGLYRRGEAQLLM  111 (168)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.6e-15  Score=88.66  Aligned_cols=78  Identities=21%  Similarity=0.194  Sum_probs=67.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|.++...|++++|+.+|++++++.|+.         +.++.++|.++.++|++++|+.+|+++++++|+++.++.+
T Consensus       308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  378 (388)
T d1w3ba_         308 LNNLANIKREQGNIEEAVRLYRKALEVFPEF---------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC---------HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3567888888888888888888888876655         5566999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus       379 lg~~~~~  385 (388)
T d1w3ba_         379 MGNTLKE  385 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=1.2e-13  Score=77.63  Aligned_cols=88  Identities=17%  Similarity=0.143  Sum_probs=73.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-------cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE-------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   75 (90)
                      +...|..+...|+|++|+..|+++++..+.....       ........++.++|.++.++|++++|+.+|+++++++|.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            3467889999999999999999999887654211       112223456799999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcC
Q psy8498          76 KASTFCCIVVKEGVL   90 (90)
Q Consensus        76 ~~~~~~~l~~~~~~~   90 (90)
                      ++.+++.+|.++..+
T Consensus       110 ~~~a~~~~g~~~~~l  124 (169)
T d1ihga1         110 NTKALYRRAQGWQGL  124 (169)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             hhhHHHhHHHHHHHc
Confidence            999999999998643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.1e-14  Score=80.49  Aligned_cols=75  Identities=15%  Similarity=0.046  Sum_probs=64.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +-+-|..+...|+|++|++.|.++   .+.   .      +.+++++|.+|..+|++++|+++|++|++++|+++.++.+
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~---~------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~   75 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDP---H------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ   75 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSC---C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCC---C------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHH
Confidence            346799999999999999999763   111   1      3456999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8498          83 IVVKEGV   89 (90)
Q Consensus        83 l~~~~~~   89 (90)
                      +|.++..
T Consensus        76 ~g~~~~~   82 (192)
T d1hh8a_          76 RGMLYYQ   82 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.3e-13  Score=81.93  Aligned_cols=77  Identities=23%  Similarity=0.148  Sum_probs=68.2

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|+++++..|..         ..++.++|.++.++|++++|+++|+++++++|+++.++.+
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  245 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN  245 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chhhHHHHHHHHHHhhhhccccccccccccc---------ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHH
Confidence            4578899999999999999999999987765         4456899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       246 lg~~~~  251 (323)
T d1fcha_         246 LGISCI  251 (323)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.5e-13  Score=81.46  Aligned_cols=77  Identities=12%  Similarity=0.117  Sum_probs=70.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +..+|..+.+.|+|++|++.|+++++..|+.         +.++..+|.++..+|++++|+.+|+++++++|.++.++..
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   72 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPDN---------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN   72 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3578999999999999999999999988766         4556999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus        73 l~~~~~   78 (388)
T d1w3ba_          73 LGNVYK   78 (388)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.9e-14  Score=81.84  Aligned_cols=66  Identities=21%  Similarity=0.066  Sum_probs=60.0

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK   76 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   76 (90)
                      .+.++|.+|...|+|++|+.+|++|+++.|..         +.++.++|.+|..+|++++|+.+|+++++++|.+
T Consensus        40 ~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~---------~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          40 YYTNRALCYLKMQQPEQALADCRRALELDGQS---------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            36789999999999999999999999998776         5566999999999999999999999999988743

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.4e-13  Score=74.20  Aligned_cols=77  Identities=17%  Similarity=0.084  Sum_probs=54.5

Q ss_pred             hhHHHHHHhh---CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498           4 DNVELSSDKS---FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF   80 (90)
Q Consensus         4 ~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (90)
                      .|+|.++...   +++.+|+..|+++++..|..       ..+.+++++|.+|.++|++++|+++|+++++++|++..+.
T Consensus        37 ~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~-------~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~  109 (122)
T d1nzna_          37 FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  109 (122)
T ss_dssp             HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc-------hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence            4555555442   33334555565555543221       1134679999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q psy8498          81 CCIVVKE   87 (90)
Q Consensus        81 ~~l~~~~   87 (90)
                      ...+.+.
T Consensus       110 ~l~~~I~  116 (122)
T d1nzna_         110 ELERLID  116 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.45  E-value=5.1e-14  Score=77.78  Aligned_cols=74  Identities=19%  Similarity=0.177  Sum_probs=65.2

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh----------cCHHHHHHHHHHHHhhCCC
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL----------KKYEEALEFHKQALVVAPM   75 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~   75 (90)
                      ++..+.+.+.|++|+..|++++++.|.+         +.+++++|.++...          +.+++|+..|+++++++|+
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~~~P~~---------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~   73 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYKSNPLD---------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   73 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHccHHHHHHHHHHHHhhCCcc---------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch
Confidence            4456778899999999999999999988         66679999999865          5558999999999999999


Q ss_pred             ChHHHHHHHHHHh
Q psy8498          76 KASTFCCIVVKEG   88 (90)
Q Consensus        76 ~~~~~~~l~~~~~   88 (90)
                      ++.+++++|.++.
T Consensus        74 ~~~a~~~lG~~y~   86 (145)
T d1zu2a1          74 KDEAVWCIGNAYT   86 (145)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             hhHHHhhHHHHHH
Confidence            9999999999875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.6e-13  Score=80.19  Aligned_cols=76  Identities=13%  Similarity=0.041  Sum_probs=69.9

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI   83 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   83 (90)
                      .+.|..+...|++++|+.+|+++++..|..         +.++..+|.++..+|++++|+.+|+++++++|+++..+..+
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   93 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL   93 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccc
Confidence            467999999999999999999999998876         45569999999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy8498          84 VVKEG   88 (90)
Q Consensus        84 ~~~~~   88 (90)
                      |.++.
T Consensus        94 a~~~~   98 (323)
T d1fcha_          94 AVSFT   98 (323)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            98875

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=6.3e-13  Score=77.79  Aligned_cols=77  Identities=10%  Similarity=-0.070  Sum_probs=67.5

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      ++.++|.++...|++++|+..|++++++.|..         +.++.++|.++..+|++++|+..|+++++++|.+.....
T Consensus        73 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  143 (259)
T d1xnfa_          73 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL  143 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh---------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHH
Confidence            36789999999999999999999999998876         345599999999999999999999999999998887766


Q ss_pred             HHHHHH
Q psy8498          82 CIVVKE   87 (90)
Q Consensus        82 ~l~~~~   87 (90)
                      .++.++
T Consensus       144 ~~~~~~  149 (259)
T d1xnfa_         144 WLYLAE  149 (259)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.41  E-value=3.2e-13  Score=75.01  Aligned_cols=72  Identities=14%  Similarity=0.032  Sum_probs=62.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC--cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      +.|+|.+|...|+|++|+..+++++++.++....  .....+..+++++|.+|..+|++++|+.+|++++++.|
T Consensus        58 ~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          58 HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            6789999999999999999999999999987432  12344566789999999999999999999999999866

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.8e-13  Score=82.01  Aligned_cols=76  Identities=9%  Similarity=-0.004  Sum_probs=46.8

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..|.+++++.|++         ..++.++|.++.+.|++++|+++|+++++++|.+..++.+
T Consensus       115 ~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n---------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~  185 (315)
T d2h6fa1         115 WHHRRVLVEWLRDPSQELEFIADILNQDAKN---------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ  185 (315)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhHHHHhhccHHHHHHHHhhhhhhhhcc---------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHH
Confidence            4455666666666666666666666665554         3333666666666666666666666666666666666666


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|.++
T Consensus       186 r~~~l  190 (315)
T d2h6fa1         186 RYFVI  190 (315)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.39  E-value=1.2e-12  Score=72.20  Aligned_cols=77  Identities=16%  Similarity=0.076  Sum_probs=65.7

Q ss_pred             chhhHHHHHHhh----------CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-----------HH
Q psy8498           2 DLDNVELSSDKS----------FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-----------YE   60 (90)
Q Consensus         2 ~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----------~~   60 (90)
                      .+.++|.++...          +.+++|+.+|++++++.|+.         +.+++++|.+|..+|+           ++
T Consensus        33 ~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~---------~~a~~~lG~~y~~~g~~~~~~~~~~~~~~  103 (145)
T d1zu2a1          33 NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---------DEAVWCIGNAYTSFAFLTPDETEAKHNFD  103 (145)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh---------hHHHhhHHHHHHHcccchhhHHHHHHhHH
Confidence            356888888754          55588999999999998877         5667999999998875           79


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498          61 EALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus        61 ~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      +|+++|++++.++|++...+..++.+.
T Consensus       104 ~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1         104 LATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            999999999999999999998888765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.9e-12  Score=66.91  Aligned_cols=81  Identities=12%  Similarity=0.093  Sum_probs=66.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .+.++|.+|..+|+|++|+..|++++++.|.....  ......++.++|.++..++++++|+++|++++..++. +....
T Consensus        40 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~--~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~  116 (128)
T d1elra_          40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLK  116 (128)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHH
T ss_pred             HHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHH
Confidence            36789999999999999999999999999988544  2233457899999999999999999999999998864 44444


Q ss_pred             HHHH
Q psy8498          82 CIVV   85 (90)
Q Consensus        82 ~l~~   85 (90)
                      .+..
T Consensus       117 ~l~~  120 (128)
T d1elra_         117 KCQQ  120 (128)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.37  E-value=2.1e-12  Score=71.65  Aligned_cols=83  Identities=16%  Similarity=-0.014  Sum_probs=66.0

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcc---hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC--------
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEII---ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--------   75 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------   75 (90)
                      |..+...|+|++|+..|++++++.+.......   ....+.+++++|.+|.++|++++|+..+++++.+.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            77888999999999999999999998744211   1223457899999999999999999999999987542        


Q ss_pred             ---ChHHHHHHHHHHhc
Q psy8498          76 ---KASTFCCIVVKEGV   89 (90)
Q Consensus        76 ---~~~~~~~l~~~~~~   89 (90)
                         ...+++++|.++..
T Consensus        96 ~~~~~~a~~~~g~~~~~  112 (156)
T d2hr2a1          96 GKLWISAVYSRALALDG  112 (156)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHH
Confidence               23357788888754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.1e-12  Score=81.48  Aligned_cols=76  Identities=11%  Similarity=-0.043  Sum_probs=69.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+.+|++|+++.|+.         ...++++|.++...|++.+|+.+|.+|+..+|..+.++.+
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~---------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~n  225 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSN---------GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN  225 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB---------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            6789999999999999999999999998887         3456999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      ++.++
T Consensus       226 L~~~~  230 (497)
T d1ya0a1         226 LQKAL  230 (497)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.8e-12  Score=69.71  Aligned_cols=78  Identities=6%  Similarity=-0.074  Sum_probs=66.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH---hcCHHHHHHHHHHHHhhCCCC--h
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK---LKKYEEALEFHKQALVVAPMK--A   77 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~--~   77 (90)
                      +.++...+...+++++|++.|++++++.|..         +.+++++|.++.+   .+++++|+..+++++..+|..  .
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~---------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~   72 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVS---------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR   72 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHH
Confidence            4578888999999999999999999998877         6677999999976   566778999999999988754  4


Q ss_pred             HHHHHHHHHHhc
Q psy8498          78 STFCCIVVKEGV   89 (90)
Q Consensus        78 ~~~~~l~~~~~~   89 (90)
                      .+++++|.+|..
T Consensus        73 ~~~~~Lg~~y~~   84 (122)
T d1nzna_          73 DYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            578999999864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-11  Score=75.54  Aligned_cols=75  Identities=11%  Similarity=0.006  Sum_probs=41.0

Q ss_pred             hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      .++|.++.+.+.+++|+.++++|+++.|..         ..++++.|.++..+|+ +++|+.+++++++++|++..++..
T Consensus        47 ~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~---------~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          47 DYFRAVLQRDERSERAFKLTRDAIELNAAN---------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHCCCC---------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            455666666666666666666666666555         2223555555555442 455555555555555555555555


Q ss_pred             HHHHH
Q psy8498          83 IVVKE   87 (90)
Q Consensus        83 l~~~~   87 (90)
                      +|.++
T Consensus       118 ~~~~~  122 (315)
T d2h6fa1         118 RRVLV  122 (315)
T ss_dssp             HHHHH
T ss_pred             HhHHH
Confidence            55443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.29  E-value=6.8e-12  Score=66.20  Aligned_cols=60  Identities=12%  Similarity=-0.038  Sum_probs=55.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL   70 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   70 (90)
                      ++.++|.++...|++++|+.+|++++++.|..         ..++.++|.+|..+|++++|++++++.|
T Consensus        52 a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          52 AWRSLGLTQAENEKDGLAIIALNHARMLDPKD---------IAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhHHHhhccccccccccccc---------ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            46789999999999999999999999998887         5556999999999999999999999976

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.2e-10  Score=69.76  Aligned_cols=82  Identities=12%  Similarity=-0.008  Sum_probs=67.4

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------   76 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------   76 (90)
                      +.+.|.+|...++|++|+++|.+|+++.+..++.   ...+.++.++|.+|.++|++++|+++|++++.+.+..      
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~---~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            5678999999999999999999999998887554   2235678999999999999999999999999886533      


Q ss_pred             hHHHHHHHHHH
Q psy8498          77 ASTFCCIVVKE   87 (90)
Q Consensus        77 ~~~~~~l~~~~   87 (90)
                      ..++..+|.++
T Consensus       117 ~~~~~~l~~~~  127 (290)
T d1qqea_         117 ANFKFELGEIL  127 (290)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhH
Confidence            34455666554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.2e-11  Score=75.36  Aligned_cols=75  Identities=15%  Similarity=0.172  Sum_probs=48.6

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      +.++|.++...|++++|+..++++++..+.           .++.++|.+++..|++++|+.+|++|++++|+++.++++
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~  191 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQ-----------HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQ  191 (497)
T ss_dssp             --------------------CCHHHHHHHH-----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHH
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-----------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHH
Confidence            456677777777777777777777766542           356889999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      +|.++.
T Consensus       192 Lg~~~~  197 (497)
T d1ya0a1         192 LAILAS  197 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999975

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=7.2e-10  Score=66.30  Aligned_cols=84  Identities=12%  Similarity=0.026  Sum_probs=64.4

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhhCCC-----
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVVAPM-----   75 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~-----   75 (90)
                      .+.++|.+|..+|++++|+++|++++++.+..+..   .....++.++|.++.. .|++++|+++|++++.+.+.     
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~  155 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc---hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            36789999999999999999999999999987543   2334556888888765 58888888888888876432     


Q ss_pred             -ChHHHHHHHHHHh
Q psy8498          76 -KASTFCCIVVKEG   88 (90)
Q Consensus        76 -~~~~~~~l~~~~~   88 (90)
                       ...++.++|.++.
T Consensus       156 ~~~~~~~~la~~~~  169 (290)
T d1qqea_         156 LSNKCFIKCADLKA  169 (290)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHH
Confidence             2344666776664

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=8.8e-10  Score=62.41  Aligned_cols=87  Identities=5%  Similarity=-0.034  Sum_probs=70.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc-------------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI-------------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQA   69 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   69 (90)
                      +.+.|......|++++|+..|.+|+++.+......             .......++.+++.++.++|++++|+.+++++
T Consensus        14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~a   93 (179)
T d2ff4a2          14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL   93 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            45788999999999999999999999876431110             01112345688999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHhc
Q psy8498          70 LVVAPMKASTFCCIVVKEGV   89 (90)
Q Consensus        70 l~~~~~~~~~~~~l~~~~~~   89 (90)
                      +.++|.+..++..++.++..
T Consensus        94 l~~~P~~e~~~~~l~~al~~  113 (179)
T d2ff4a2          94 TFEHPYREPLWTQLITAYYL  113 (179)
T ss_dssp             HHHSTTCHHHHHHHHHHHHT
T ss_pred             HHhCCccHHHHHHHHHHHHH
Confidence            99999999999999888764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.02  E-value=1e-09  Score=65.58  Aligned_cols=71  Identities=13%  Similarity=-0.041  Sum_probs=62.8

Q ss_pred             HHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498           8 LSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE   87 (90)
Q Consensus         8 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~   87 (90)
                      .-....|++++|+..|+++++..|.+         ......+|.+++..|++++|+..++++++++|++...+..++.+.
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d---------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll   74 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKD---------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV   74 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34567899999999999999999988         555699999999999999999999999999999888887776654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=3.7e-10  Score=68.39  Aligned_cols=77  Identities=17%  Similarity=-0.053  Sum_probs=68.1

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC   82 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (90)
                      ..++|.++...+++++|+..+.++++..|..         ..++..+|.++..+|++++|+++|+++++++|..+..+..
T Consensus       245 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~  315 (334)
T d1dcea1         245 CELSVEKSTVLQSELESCKELQELEPENKWC---------LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  315 (334)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH---------HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhCchH---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence            3467888999999999999999999998877         5566999999999999999999999999999998888888


Q ss_pred             HHHHHh
Q psy8498          83 IVVKEG   88 (90)
Q Consensus        83 l~~~~~   88 (90)
                      ++..+.
T Consensus       316 L~~~~~  321 (334)
T d1dcea1         316 LRSKFL  321 (334)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            876653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=5.9e-08  Score=51.79  Aligned_cols=72  Identities=13%  Similarity=-0.021  Sum_probs=55.2

Q ss_pred             hHHHHHHhh---CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           5 NVELSSDKS---FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         5 ~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      +.|.++...   .+..+|+..++++++..|..        ...+++++|..|+++|+|++|+++++++|+++|.+..+..
T Consensus        40 ~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~--------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          40 NYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            445555433   45567899999888765432        1356799999999999999999999999999999988765


Q ss_pred             HHH
Q psy8498          82 CIV   84 (90)
Q Consensus        82 ~l~   84 (90)
                      -.-
T Consensus       112 L~~  114 (124)
T d2pqrb1         112 LKS  114 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=3.4e-09  Score=62.83  Aligned_cols=65  Identities=15%  Similarity=-0.087  Sum_probs=54.8

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      .|.++...|++++|+.+|+++++..|....    .....++..+|.++..+|++++|+..|++++++.+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~   82 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWF----YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR   82 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            478889999999999999999998776522    22234678999999999999999999999998765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=1.3e-08  Score=57.43  Aligned_cols=60  Identities=10%  Similarity=-0.090  Sum_probs=54.9

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV   71 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   71 (90)
                      +.+++.++...|++++|+.++++++++.|..         ...+.+++.++...|++++|++.|+++..
T Consensus        70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~---------e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          70 HTAKAEAEIACGRASAVIAELEALTFEHPYR---------EPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999877         55679999999999999999999999853

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=5.7e-08  Score=57.36  Aligned_cols=69  Identities=16%  Similarity=0.036  Sum_probs=58.7

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ..++|.++...|++++|+.++++++......+..   .....++..+|.++..+|++++|++++++|+++.+
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLM---SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccC---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            3568999999999999999999999988876443   22345679999999999999999999999998754

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.1e-08  Score=50.38  Aligned_cols=47  Identities=13%  Similarity=-0.069  Sum_probs=40.1

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK   57 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g   57 (90)
                      .+.++|.++.+.|++++|+.+|++++++.|+.         +.+++|++.+...++
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~---------~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLELDPEH---------QRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHhC
Confidence            36789999999999999999999999998887         556688887766554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=6.4e-08  Score=58.32  Aligned_cols=77  Identities=6%  Similarity=-0.151  Sum_probs=58.5

Q ss_pred             hhHHHHHHhhC--CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498           4 DNVELSSDKSF--SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus         4 ~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .++|.++...+  ++++|+..+++++++.|..     ...   .....|.++...|.+++|+.+++++++++|++..++.
T Consensus       111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~---~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~  182 (334)
T d1dcea1         111 HHRCWLLSRLPEPNWARELELCARFLEADERN-----FHC---WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (334)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-----HHH---HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             HHhhHHHHHhccccHHHHHHHHHHHHhhCchh-----hhh---hhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHH
Confidence            34555555444  4778888888888876554     222   2366788999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy8498          82 CIVVKEG   88 (90)
Q Consensus        82 ~l~~~~~   88 (90)
                      ++|.++.
T Consensus       183 ~l~~~~~  189 (334)
T d1dcea1         183 YRSCLLP  189 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998865

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.38  E-value=3.1e-06  Score=49.12  Aligned_cols=73  Identities=19%  Similarity=0.084  Sum_probs=57.8

Q ss_pred             chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCCh
Q psy8498           2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus         2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      ++.++|..+...+|+++|+++|+++.+..  +         ...+.+||.+|..    ..++..|..+++.+....  ++
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~---------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~   70 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK--E---------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS   70 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C---------HHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--cc
Confidence            46789999999999999999999997641  1         3456889999988    678999999999987654  55


Q ss_pred             HHHHHHHHHH
Q psy8498          78 STFCCIVVKE   87 (90)
Q Consensus        78 ~~~~~l~~~~   87 (90)
                      .+...+|.++
T Consensus        71 ~a~~~l~~~~   80 (265)
T d1ouva_          71 NGCHLLGNLY   80 (265)
T ss_dssp             HHHHHHHHHH
T ss_pred             chhhcccccc
Confidence            6666666554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.04  E-value=3.6e-06  Score=49.88  Aligned_cols=78  Identities=9%  Similarity=-0.069  Sum_probs=60.3

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC--------------------------c-chhhHHHHHHhHHHHHHH
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE--------------------------I-IADKWEPLLNNLGHVNRK   55 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~-~~~~~~~~~~~lg~~~~~   55 (90)
                      ..++|.++...|++++|+..|++++++.|+....                          . ....| ..+...+..+..
T Consensus        33 r~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~-~~~l~~a~~~~~  111 (264)
T d1zbpa1          33 RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEEL-TKSLVSFNLSMV  111 (264)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHH-HHHHHHHHHHHh
Confidence            4578999999999999999999999998875100                          0 01122 234567889999


Q ss_pred             hcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498          56 LKKYEEALEFHKQALVVAPMKASTFC   81 (90)
Q Consensus        56 ~g~~~~A~~~~~~al~~~~~~~~~~~   81 (90)
                      .|++++|.+.++++.+..|..+..+.
T Consensus       112 ~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1         112 SQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            99999999999999999987665443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.87  E-value=1.7e-05  Score=45.87  Aligned_cols=61  Identities=15%  Similarity=0.037  Sum_probs=39.8

Q ss_pred             hhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCC
Q psy8498           3 LDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAP   74 (90)
Q Consensus         3 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~   74 (90)
                      +.++|.+|..    ..++++|+.+|+++.+..  .         +..+++||.+|.+    ..++++|+++|++|....+
T Consensus       181 ~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~---------~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         181 CFNAGNMYHHGEGATKNFKEALARYSKACELE--N---------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             ccchhhhcccCcccccchhhhhhhHhhhhccc--C---------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            4566767665    567777777777776641  1         3344777777765    3367777777777776654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=7.6e-05  Score=44.25  Aligned_cols=74  Identities=8%  Similarity=0.021  Sum_probs=53.5

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV   84 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~   84 (90)
                      ..+......|+++.|...|+++++..|..    .    ..++..++.+..+.|+++.|.+.|+++++..|.....+...+
T Consensus       104 ~ya~~~~~~~~~~~a~~i~~~~l~~~~~~----~----~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a  175 (308)
T d2onda1         104 AYADYEESRMKYEKVHSIYNRLLAIEDID----P----TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  175 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSC----T----HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhcCC----h----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            44667778888888888888888754432    1    123377778888888888888888888888887777666655


Q ss_pred             HH
Q psy8498          85 VK   86 (90)
Q Consensus        85 ~~   86 (90)
                      ..
T Consensus       176 ~~  177 (308)
T d2onda1         176 LM  177 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.72  E-value=0.0001  Score=38.79  Aligned_cols=64  Identities=11%  Similarity=0.003  Sum_probs=37.3

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIVVK   86 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~   86 (90)
                      ....++++|+.+|+++.+..  .         +..++++|.+|..    ..++++|+++|+++.+.  .++.+.+.+|.+
T Consensus        34 ~~~~~~~~a~~~~~~aa~~g--~---------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~  100 (133)
T d1klxa_          34 NSQINKQKLFQYLSKACELN--S---------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK  100 (133)
T ss_dssp             CTTSCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHhhhhccc--c---------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHH
Confidence            34456667777777665531  1         2234666666665    45666777777776654  345566666665


Q ss_pred             H
Q psy8498          87 E   87 (90)
Q Consensus        87 ~   87 (90)
                      |
T Consensus       101 y  101 (133)
T d1klxa_         101 Q  101 (133)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.62  E-value=0.00034  Score=36.72  Aligned_cols=50  Identities=14%  Similarity=0.055  Sum_probs=32.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhC
Q psy8498          13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVA   73 (90)
Q Consensus        13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   73 (90)
                      ..++++|.++|+++.+...           +...+++|.+|..    ..++++|+++|++|.+..
T Consensus        72 ~~d~~~A~~~~~~aa~~g~-----------~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          72 KKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CCCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             chhhHHHHHHHhhhhccCc-----------chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            3456777777777765311           3345777777776    457777778887777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=0.00028  Score=41.75  Aligned_cols=58  Identities=14%  Similarity=0.052  Sum_probs=44.4

Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498          11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA   77 (90)
Q Consensus        11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (90)
                      ...|+.+.|...|+++++..|..         ...+..++......|+++.|...|++++...|.++
T Consensus       180 ~~~~~~~~a~~i~e~~l~~~p~~---------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         180 YCSKDKSVAFKIFELGLKKYGDI---------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HhccCHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            34577888888888888876665         33347888888899999999999999988766443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=7.3e-05  Score=39.55  Aligned_cols=31  Identities=13%  Similarity=0.104  Sum_probs=29.0

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      +.++|++|.+.|+|++|..++++++++.|.+
T Consensus        76 lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          76 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            4689999999999999999999999999887

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.38  E-value=0.063  Score=25.85  Aligned_cols=30  Identities=23%  Similarity=0.210  Sum_probs=24.0

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      +..+..-+.-+.+.|+|++|+++.++|...
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~y   37 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATTY   37 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334566788889999999999999987743

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.74  E-value=0.069  Score=25.70  Aligned_cols=27  Identities=15%  Similarity=0.070  Sum_probs=22.5

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      +.-+...|.|++|+++.++|.+...+-
T Consensus        15 Aer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1          15 ADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            344678899999999999999887765

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.00  E-value=0.1  Score=25.60  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=25.5

Q ss_pred             hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      +..-|+-+-..|+|++|+.+|.++++..-..
T Consensus        18 l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~   48 (93)
T d1wfda_          18 VLKRAVELDAESRYQQALVCYQEGIDMLLQV   48 (93)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3456777889999999999999999877654

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.87  E-value=0.42  Score=27.23  Aligned_cols=54  Identities=19%  Similarity=0.089  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV   71 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   71 (90)
                      +.|...|++|+++....-++ .++.......|.+.+++. +|+.++|.+..++|+.
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~-t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQP-THPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCC-CchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46899999999998764332 233333445667777666 8999999999999884

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=92.62  E-value=0.45  Score=26.96  Aligned_cols=57  Identities=9%  Similarity=0.026  Sum_probs=42.1

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHH
Q psy8498          13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQAL   70 (90)
Q Consensus        13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al   70 (90)
                      .|.-++|...|++|.++....-+ +.++.......|.+.++++ +++.++|.+..++|.
T Consensus       136 ~~~~~~a~~aY~~A~~ia~~~l~-pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~  193 (220)
T d2o8pa1         136 LCSLEDSKKIHQDAFTLLCEHPD-KIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLG  193 (220)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCGG-GGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            56678999999999998876422 2233334455777877777 899999999888773

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=92.40  E-value=0.49  Score=26.88  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHhhCC-CcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGG-EIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV   71 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   71 (90)
                      ++|...|++|+++....-. .+.++.......|.+.+|++ +++.++|.+..++|..
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd  180 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ  180 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5689999999998876421 22333344455777888877 8999999999998874

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.97  E-value=0.31  Score=23.72  Aligned_cols=26  Identities=12%  Similarity=0.084  Sum_probs=17.0

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVV   72 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~   72 (90)
                      ...|.-+-..|+|++|+.+|.+++++
T Consensus        19 ~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          19 LKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33444445567788888888887753

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=88.55  E-value=0.95  Score=23.85  Aligned_cols=32  Identities=13%  Similarity=0.143  Sum_probs=27.8

Q ss_pred             HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498          43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus        43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ++.+..+|.+|.+.|...++-+...+|.+-..
T Consensus       120 ~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1         120 ASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            56678999999999999999999999886543

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=88.47  E-value=1.3  Score=25.23  Aligned_cols=54  Identities=15%  Similarity=0.007  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498          17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV   71 (90)
Q Consensus        17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   71 (90)
                      +.|...|++|+++....-.+ .++.......|.+.+++. .|+.++|.+..++++.
T Consensus       148 ~~a~~aY~~A~~~a~~~l~p-t~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         148 ESTLTAYKAAQDIATTELAP-THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCC-CcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45889999999988764332 233334455778888887 6999999999999885

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.19  E-value=0.17  Score=23.77  Aligned_cols=23  Identities=22%  Similarity=0.223  Sum_probs=12.6

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHH
Q psy8498           7 ELSSDKSFSYTVAENCFMEALSK   29 (90)
Q Consensus         7 ~~~~~~~g~~~~A~~~~~~al~~   29 (90)
                      |+-.-..|+|++|+.+|.++++.
T Consensus        18 Av~~D~~~~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1          18 AAQEDKAGNYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            44455555555555555555554

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.24  E-value=0.53  Score=23.15  Aligned_cols=28  Identities=21%  Similarity=0.278  Sum_probs=21.4

Q ss_pred             HhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498          47 NNLGHVNRKLKKYEEALEFHKQALVVAP   74 (90)
Q Consensus        47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~   74 (90)
                      ..+|..+...|+++++..+|-.|+...|
T Consensus        24 V~lGE~Ll~~G~~~~g~~h~~nAi~Vc~   51 (95)
T d1om2a_          24 IQLGEELLAQGDYEKGVDHLTNAIAVCG   51 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence            3456677777888888888888887765

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.10  E-value=1.1  Score=21.96  Aligned_cols=29  Identities=10%  Similarity=0.000  Sum_probs=20.9

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498           5 NVELSSDKSFSYTVAENCFMEALSKVKQL   33 (90)
Q Consensus         5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~   33 (90)
                      .+|-.+...|+++++..+|-+|+.+.+..
T Consensus        25 ~lGE~Ll~~G~~~~g~~h~~nAi~Vc~qP   53 (95)
T d1om2a_          25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP   53 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHcCCH
Confidence            45667777788888888777777776554