Psyllid ID: psy8503

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATARVESYYEKLSAALPEIANLPGTLFKSAAPVRRDLRSVFHSYAVSMRRQLDVHSASGVGLEDLEISLSDQMAKVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASILLPFPRYC
ccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccEEEEcHHHccccccccccHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEEEEEEEEEEccccccccEEEEEEEEcccccccccccEEEEEccccccccccccccEEEEEccccccccccEEEEEccccc
ccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcEEEccccEEEEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHEEEccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHccccccccccHHHHHHHcccccccccHccccccccccHHHHHHHHHHHHcHHHHHcccccEccccccEEEEEEEEEEcccEEEEEEEEccccccEEEEEEEEEccccHHHccccHHHHHHHcccccccccccccEEEEEcccHHHHHHHEEEEccccc
MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLrdegvfrgGIDVLVRSKLavsadtgvTMQLTVRstsgleykaSIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLgkegprakqpskyIRFIYNRVILENATVRAAAVTAMAQFGALcqmdgddevrdRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERALHAynlhpsptpfdmssiplstittsdptemadrlrtpsggvaseptaQATARVESYYEKLSAALPeianlpgtlfksaapvrrdLRSVFHSYAVSMRRQldvhsasgvgledlEISLSDQmakvnkpnFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASILLPFPRYC
MISDSNRSIATLAITtllktgsessvDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKlavsadtgvtmqltvrstsgleykaSIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLgkegprakqpskYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLrtpsggvaseptAQATARVESYYEKLSAALPEIANLPGTLFKSAAPVRRDLRSVFHSYAVSMRRQLDVHSASGVGLEDLEISLSDQMAKVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASILLPFPRYC
MISDSNRSiatlaittllKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENatvraaavtamaQFGALCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATARVESYYEKLSAALPEIANLPGTLFKSAAPVRRDLRSVFHSYAVSMRRQLDVHSASGVGLEDLEISLSDQMAKVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASILLPFPRYC
*********ATLAITTLLKTG***SVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERALHAYNL*************************************************SYYEKLSAALPEIANLPGTLFKSAAPVRRDLRSVFHSYAVSMRRQLDVHSASGVGLEDLEISLSDQMAKVNKPNFLALWE**************FCLSKMESIQEAVASILLPF****
*****NRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSI********************************************AALPEIANLPGTLFKSAAPVRRDLRSVFHSYAVSMRRQLDVHSASGVGLEDLEISLSDQMAKVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASILLPFPRYC
MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATARVESYYEKLSAALPEIANLPGTLFKSAAPVRRDLRSVFHSYAVSMRRQLDVHSASGVGLEDLEISLSDQMAKVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASILLPFPRYC
***DSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPL*******************************ARVESYYEKLSAALPEIANLPGTLFKSAAPVRRDLRSVFHSYAVSMRRQLDVHSASGVGLEDLEISLSDQMAKVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASILLPFPRYC
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SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATARVESYYEKLSAALPEIANLPGTLFKSAAPVRRDLRSVFHSYAVSMRRQLDVHSASGVGLEDLEISLSDQMAKVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASILLPFPRYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query421 2.2.26 [Sep-21-2011]
Q9I8E6 873 Coatomer subunit gamma-2 N/A N/A 0.736 0.355 0.543 1e-101
Q9UBF2871 Coatomer subunit gamma-2 yes N/A 0.895 0.432 0.437 4e-99
Q9QXK3871 Coatomer subunit gamma-2 yes N/A 0.895 0.432 0.435 8e-99
Q9PUE4 873 Coatomer subunit gamma-2 yes N/A 0.736 0.355 0.534 1e-98
A2VE21 871 Coatomer subunit gamma-2 yes N/A 0.733 0.354 0.525 3e-97
Q6DKD7 872 Coatomer subunit gamma-2 N/A N/A 0.688 0.332 0.540 4e-96
Q66JI9 872 Coatomer subunit gamma-2 no N/A 0.688 0.332 0.534 9e-95
P53620 874 Coatomer subunit gamma-1 no N/A 0.738 0.355 0.516 3e-94
Q4AEF8 874 Coatomer subunit gamma-1 no N/A 0.684 0.329 0.539 4e-94
Q9QZE5 874 Coatomer subunit gamma-1 no N/A 0.681 0.328 0.543 5e-94
>sp|Q9I8E6|COPG2_TAKRU Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1 Back     alignment and function desciption
 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/372 (54%), Positives = 242/372 (65%), Gaps = 62/372 (16%)

Query: 1   MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFP 60
           +I+DSNRSIATLAITTLLKTGSESSVDRLMKQI++FVSEISDEFK+VVV+AI ALC K+P
Sbjct: 332 LITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYP 391

Query: 61  RKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIAD 120
           RKH+ +MNFLS MLRD+G                                G EYK +I D
Sbjct: 392 RKHSAMMNFLSNMLRDDG--------------------------------GFEYKRAIVD 419

Query: 121 TIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNR 180
            II+IIEENPE+KETGLAHLCEFIEDCEHT LA +ILHLLGKEGPR  QPSKYIRFI+NR
Sbjct: 420 CIISIIEENPESKETGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPQPSKYIRFIFNR 479

Query: 181 VILENATVRAAAVTAMAQFGAL--------------CQMDGDDEVRDRATYYHSILASQN 226
           V+LE+  VRAAAV+A+A+FGA               C MD DDEVRDRAT+Y ++L  + 
Sbjct: 480 VVLESEAVRAAAVSALAKFGAQNDDLLPSVLVLMQRCMMDSDDEVRDRATFYMNVLQQKQ 539

Query: 227 KQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPLSTI-TTSDPTEMADRLRT 285
           K L   YI   L VSIP LE++LH Y L PS  PFDM S+PL+T   T   TE+A     
Sbjct: 540 KALNAAYIFNGLSVSIPGLEKSLHQYTLEPSEKPFDMKSVPLATTPITEQKTEIA----- 594

Query: 286 PSGGVASEPTAQATARVESYYEKLSAALPEIANLPGTLFKSAAPVRRD-------LRSVF 338
                +  P   A +R + Y E+L AA+PE   L G LFKS+ PV+         +R + 
Sbjct: 595 -PAATSKLPEKLAPSRQDIYQEQL-AAIPEFQGL-GPLFKSSDPVQLTEAETEYVVRCIK 651

Query: 339 HSYAVSMRRQLD 350
           H++A  M  Q D
Sbjct: 652 HTFARHMVFQFD 663
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Takifugu rubripes (taxid: 31033)
>sp|Q9UBF2|COPG2_HUMAN Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1 Back     alignment and function description
>sp|Q9QXK3|COPG2_MOUSE Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=2 SV=1 Back     alignment and function description
>sp|Q9PUE4|COPG2_DANRE Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 PE=2 SV=2 Back     alignment and function description
>sp|A2VE21|COPG2_BOVIN Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q6DKD7|COPG2_XENLA Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg2 PE=2 SV=1 Back     alignment and function description
>sp|Q66JI9|COPG2_XENTR Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=copg2 PE=2 SV=1 Back     alignment and function description
>sp|P53620|COPG1_BOVIN Coatomer subunit gamma-1 OS=Bos taurus GN=COPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q4AEF8|COPG1_RAT Coatomer subunit gamma-1 OS=Rattus norvegicus GN=Copg1 PE=2 SV=1 Back     alignment and function description
>sp|Q9QZE5|COPG1_MOUSE Coatomer subunit gamma-1 OS=Mus musculus GN=Copg1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
91090890 879 PREDICTED: similar to RE62270p [Triboliu 0.783 0.375 0.588 1e-111
242012413 881 Coatomer subunit gamma-2, putative [Pedi 0.774 0.370 0.571 1e-103
410918755 873 PREDICTED: coatomer subunit gamma-2-like 0.736 0.355 0.545 1e-100
312377540 809 hypothetical protein AND_11128 [Anophele 0.774 0.402 0.536 1e-99
82177624 873 RecName: Full=Coatomer subunit gamma-2; 0.736 0.355 0.543 2e-99
432943073 873 PREDICTED: coatomer subunit gamma-2-like 0.736 0.355 0.543 3e-99
348514957 873 PREDICTED: coatomer subunit gamma-2-like 0.736 0.355 0.543 4e-99
327288292 874 PREDICTED: coatomer subunit gamma-2-like 0.695 0.335 0.573 4e-99
443727134 869 hypothetical protein CAPTEDRAFT_162815 [ 0.741 0.359 0.548 1e-98
344242096 808 Coatomer subunit gamma-2 [Cricetulus gri 0.895 0.466 0.438 5e-98
>gi|91090890|ref|XP_973414.1| PREDICTED: similar to RE62270p [Tribolium castaneum] gi|270013230|gb|EFA09678.1| hypothetical protein TcasGA2_TC011806 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/389 (58%), Positives = 267/389 (68%), Gaps = 59/389 (15%)

Query: 1   MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFP 60
           +I+DSNRSIATLAITTLLKTG+ESSVDRLMKQIATFVSEISDEFK+VVV+AIRAL LKFP
Sbjct: 332 LITDSNRSIATLAITTLLKTGAESSVDRLMKQIATFVSEISDEFKVVVVQAIRALALKFP 391

Query: 61  RKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIAD 120
           RKH+VLMNFLSAMLRDEG                                GLEYKASIAD
Sbjct: 392 RKHSVLMNFLSAMLRDEG--------------------------------GLEYKASIAD 419

Query: 121 TIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNR 180
           TIITIIE+NPEAKE GLAHLCEFIEDCEHTSLAVRILHLLGKEGPR KQPS+ IRFIYNR
Sbjct: 420 TIITIIEDNPEAKEAGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRTKQPSRCIRFIYNR 479

Query: 181 VILENATVRAAAVTAMAQFGAL--------------CQMDGDDEVRDRATYYHSILASQN 226
           VILEN TVRAAAV+AMAQFGA               CQMD DDEVRDRATYY SIL  Q+
Sbjct: 480 VILENPTVRAAAVSAMAQFGATCPDLLENIQVLLARCQMDSDDEVRDRATYYSSILGQQD 539

Query: 227 KQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTP 286
           K L  +YI+E L VSIP+LER+L  Y L+P  +PFDM S+P++ I T +  E  D+ +  
Sbjct: 540 KGLYNNYILETLQVSIPALERSLKDYALNPGDSPFDMKSVPIAVIPTREEAE--DKHKAD 597

Query: 287 SGGVASEPTAQAT-ARVESYYEKLSAALPEIANLPGTLFKSAAPVRRD-------LRSVF 338
              ++S P    T +R ES+ EKL   LP +A+L G LFKS+  V          +R + 
Sbjct: 598 GMIISSGPPKPPTVSREESFAEKL-GHLPGVADL-GPLFKSSEVVELTESETEYFVRCIK 655

Query: 339 HSYAVSMRRQLD-VHSASGVGLEDLEISL 366
           H +   +  Q D +++ S   LED+ + L
Sbjct: 656 HCFTNHVVLQFDCLNTLSDQLLEDVRVQL 684

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242012413|ref|XP_002426927.1| Coatomer subunit gamma-2, putative [Pediculus humanus corporis] gi|212511156|gb|EEB14189.1| Coatomer subunit gamma-2, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|410918755|ref|XP_003972850.1| PREDICTED: coatomer subunit gamma-2-like [Takifugu rubripes] Back     alignment and taxonomy information
>gi|312377540|gb|EFR24350.1| hypothetical protein AND_11128 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|82177624|sp|Q9I8E6.1|COPG2_FUGRU RecName: Full=Coatomer subunit gamma-2; AltName: Full=Gamma-2-coat protein; Short=Gamma-2-COP gi|8926697|emb|CAB96534.1| coatomer protein gamma 2-subunit [Takifugu rubripes] Back     alignment and taxonomy information
>gi|432943073|ref|XP_004083090.1| PREDICTED: coatomer subunit gamma-2-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|348514957|ref|XP_003445006.1| PREDICTED: coatomer subunit gamma-2-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|327288292|ref|XP_003228862.1| PREDICTED: coatomer subunit gamma-2-like isoform 2 [Anolis carolinensis] Back     alignment and taxonomy information
>gi|443727134|gb|ELU14014.1| hypothetical protein CAPTEDRAFT_162815 [Capitella teleta] Back     alignment and taxonomy information
>gi|344242096|gb|EGV98199.1| Coatomer subunit gamma-2 [Cricetulus griseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
ZFIN|ZDB-GENE-000208-8 873 copg2 "coatomer protein comple 0.562 0.271 0.479 2.9e-90
UNIPROTKB|F1SNE9 871 COPG2 "Coatomer subunit gamma" 0.515 0.249 0.5 5.2e-90
UNIPROTKB|A2VE21 871 COPG2 "Coatomer subunit gamma- 0.515 0.249 0.5 8.4e-90
UNIPROTKB|E1C7T8 871 COPG2 "Coatomer subunit gamma" 0.515 0.249 0.491 1.5e-89
UNIPROTKB|Q9UBF2 871 COPG2 "Coatomer subunit gamma- 0.515 0.249 0.495 1.5e-89
MGI|MGI:1858683 871 Copg2 "coatomer protein comple 0.513 0.247 0.506 2.9e-89
UNIPROTKB|F1PHS7 1010 COPG2 "Coatomer subunit gamma" 0.515 0.214 0.495 4e-88
FB|FBgn0028968 883 gammaCop "gamma-coatomer prote 0.517 0.246 0.5 5.4e-82
WB|WBGene00011775 885 T14G10.5 [Caenorhabditis elega 0.691 0.328 0.372 1.9e-63
UNIPROTKB|F1SPF9 467 COPG1 "Uncharacterized protein 0.501 0.451 0.514 1.1e-60
ZFIN|ZDB-GENE-000208-8 copg2 "coatomer protein complex, subunit gamma 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 546 (197.3 bits), Expect = 2.9e-90, Sum P(3) = 2.9e-90
 Identities = 128/267 (47%), Positives = 159/267 (59%)

Query:   106 VRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGP 165
             +R   G EYK +I D II+IIEENPE+KETGLAHLCEFIEDCEHT LA +ILHLLGKEGP
Sbjct:   405 LRDDGGFEYKRAIVDCIISIIEENPESKETGLAHLCEFIEDCEHTVLATKILHLLGKEGP 464

Query:   166 RAKQPSKYIRFIYNRVILENXXXXXXXXXXXXQFGAL--------------CQMDGDDEV 211
             R   PSKYIRFI+NRV+LE+            +FGA               C MD DDEV
Sbjct:   465 RTPTPSKYIRFIFNRVVLESEAVRAAAVSALAKFGAQNDDLLPSVLVLMQRCMMDSDDEV 524

Query:   212 RDRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPLSTI 271
             RDRAT+Y ++L  + K L   YI   L VS+  LE++LH Y L PS  PFDM ++PL+T 
Sbjct:   525 RDRATFYMNVLQQKQKALNAAYIFNGLSVSVLGLEKSLHQYTLEPSEKPFDMKTVPLATA 584

Query:   272 T-TSDPTEMADRLRTPSGGVASEPTAQATARVESYYEKLSAALPEIANLPGTLFKSAAPV 330
               T   TE+A     P    +  P   A +R + Y E+LSA +PE   L G LFKS+ PV
Sbjct:   585 PITEHKTEIA-----PVA-TSKLPEKLAPSRQDIYQEQLSA-IPEFQGL-GPLFKSSEPV 636

Query:   331 RRD-------LRSVFHSYAVSMRRQLD 350
             +         +R + H++A  M  Q D
Sbjct:   637 QLTEAETEYVVRCIKHTFANHMIFQFD 663
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030117 "membrane coat" evidence=IEA
GO:0005198 "structural molecule activity" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0030126 "COPI vesicle coat" evidence=IEA
GO:0005798 "Golgi-associated vesicle" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0031410 "cytoplasmic vesicle" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
UNIPROTKB|F1SNE9 COPG2 "Coatomer subunit gamma" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE21 COPG2 "Coatomer subunit gamma-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7T8 COPG2 "Coatomer subunit gamma" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBF2 COPG2 "Coatomer subunit gamma-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1858683 Copg2 "coatomer protein complex, subunit gamma 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHS7 COPG2 "Coatomer subunit gamma" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0028968 gammaCop "gamma-coatomer protein" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00011775 T14G10.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1SPF9 COPG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8I0G5COPG_DROMENo assigned EC number0.51150.77670.3703yesN/A
Q7PVF6COPG_ANOGANo assigned EC number0.52060.77430.3755yesN/A
A2VE21COPG2_BOVINNo assigned EC number0.52560.73390.3547yesN/A
Q9PUE4COPG2_DANRENo assigned EC number0.53490.73630.3550yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
COG5240 898 COG5240, SEC21, Vesicle coat complex COPI, gamma s 2e-68
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 1e-44
pfam08752269 pfam08752, Gamma-COP, Coatomer gamma subunit appen 2e-09
pfam08752269 pfam08752, Gamma-COP, Coatomer gamma subunit appen 1e-06
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  232 bits (593), Expect = 2e-68
 Identities = 119/352 (33%), Positives = 176/352 (50%), Gaps = 57/352 (16%)

Query: 1   MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFP 60
           +ISD NR+I+T AITTLLKTG+E ++DRL+  I +FV ++SD FKI+ ++A+R+L L FP
Sbjct: 348 LISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFP 407

Query: 61  RKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIAD 120
            K    ++FL + L  EG                                GLE+K  + D
Sbjct: 408 SKKLSYLDFLGSSLLQEG--------------------------------GLEFKKYMVD 435

Query: 121 TIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNR 180
            I   +E +P++KE  L  LC FIEDCE+  + VRIL +LG+EGPRAK P KY+R IYNR
Sbjct: 436 AISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNR 495

Query: 181 VILENATVRAAAVTAMAQFG----------------ALCQMDGDDEVRDRATYYHSILAS 224
           +ILEN  VR+AAV A+++F                   C  D DDEVRDRA++   +   
Sbjct: 496 LILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASF--LLRNM 553

Query: 225 QNKQLIQDYIIEPLMVSIPSLERALHAY-NLHPSPTPFDMSSIPLSTITTSDPTEMADR- 282
           +     +       +  IPSLE  L  Y +     T FD++ +   T        +  + 
Sbjct: 554 RLSDACEPLFSSDELGDIPSLELELIGYISEDSFATAFDVNQVRKFTEDEMKAINLKRKK 613

Query: 283 ----LRTPSGGVASEPTAQATARVESYYEKLSAALPEIANLPGTLFKSAAPV 330
               L T       +  ++A   +++ Y     ++ +I    G L  S+  +
Sbjct: 614 SETTLDTTESVPKEDANSKADPNIKTKYADELLSIEQI-KPFGQLVNSSREI 664

Length = 898
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information
>gnl|CDD|220003 pfam08752, Gamma-COP, Coatomer gamma subunit appendage domain Back     alignment and domain information
>gnl|CDD|220003 pfam08752, Gamma-COP, Coatomer gamma subunit appendage domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 421
KOG1078|consensus865 100.0
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.8
PTZ00429746 beta-adaptin; Provisional 99.76
PF08752151 COP-gamma_platf: Coatomer gamma subunit appendage 99.73
KOG1078|consensus 865 98.9
KOG1061|consensus734 97.41
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.24
KOG1062|consensus 866 96.78
PRK09687280 putative lyase; Provisional 96.28
PRK09687280 putative lyase; Provisional 96.12
KOG1062|consensus866 95.81
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 95.37
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 95.31
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.25
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 95.09
KOG1058|consensus948 95.07
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.06
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.57
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 94.29
PTZ00429 746 beta-adaptin; Provisional 93.8
COG1413335 FOG: HEAT repeat [Energy production and conversion 89.73
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 89.5
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 89.3
PF14806129 Coatomer_b_Cpla: Coatomer beta subunit appendage p 88.42
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 88.31
COG1413335 FOG: HEAT repeat [Energy production and conversion 86.35
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 82.7
>KOG1078|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.8e-111  Score=890.50  Aligned_cols=374  Identities=57%  Similarity=0.891  Sum_probs=348.0

Q ss_pred             CCCCCchhHHHHHHHHhhccCCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhcccc
Q psy8503           1 MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVF   80 (421)
Q Consensus         1 LI~DsNrsiatlAittLLKTG~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvf   80 (421)
                      ||||+||||||+|||||||||+|+|||||||||++||+||||||||+||+|||+||.|||+||.++++||+++||++|  
T Consensus       327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eG--  404 (865)
T KOG1078|consen  327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEG--  404 (865)
T ss_pred             hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhcc--
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHHh
Q psy8503          81 RGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLL  160 (421)
Q Consensus        81 rgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~L  160 (421)
                                                    |++||++|||+|++||++||++||.+|.|||||||||||++|++||||+|
T Consensus       405 ------------------------------g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlL  454 (865)
T KOG1078|consen  405 ------------------------------GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLL  454 (865)
T ss_pred             ------------------------------CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence                                          99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh--------------hhcCCCChhhhhhHHHHHHHHhhhc
Q psy8503         161 GKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA--------------LCQMDGDDEVRDRATYYHSILASQN  226 (421)
Q Consensus       161 G~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~--------------r~~~D~DDEVRDRA~~yl~il~~~~  226 (421)
                      |+|||++++|++|||||||||+|||++||||||+||+|||+              ||++|.||||||||+||++.+.+.+
T Consensus       455 G~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~  534 (865)
T KOG1078|consen  455 GKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD  534 (865)
T ss_pred             hccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999996              9999999999999999999999888


Q ss_pred             HHHHhhhhcCCCCCChHHHHHHHHHhccCCCCCCCccCCCCcccccCCCchhhhhccCCCCCCCCCCccchhhhhHHHHH
Q psy8503         227 KQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATARVESYY  306 (421)
Q Consensus       227 ~~~~~~~i~~~~~~s~~~Le~~L~~Y~~~~~~~pfd~~svp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  306 (421)
                      ..+...|  +.+.++++.||++|++|+.+++.+|||+.++|..+....+......+  . .  ....+..+...++++|+
T Consensus       535 ~~l~~~~--~~l~~s~~~le~~l~~y~~~~~~~~fd~~~v~~~s~~~~~~~~~~~k--~-~--~~~~~~~~~~~~~d~~~  607 (865)
T KOG1078|consen  535 DVLNQNY--SGLFVSIPGLERSLVSYITGSFATPFDIKSVPVKSQAEEPAINLELK--Q-T--LVKAPEKEKIPKVDEYA  607 (865)
T ss_pred             hhhcccc--cccccccchhHHHHHHHhhccccccchhhcchhhccccccccccccc--c-c--ccCCCcccCCCccchhH
Confidence            8888888  89999999999999999999999999999999766554332221111  0 0  12233344455677999


Q ss_pred             HHHhhhccccccCCCcccccccceeE-------EEEEEeeeecceeEEEE------------------------------
Q psy8503         307 EKLSAALPEIANLPGTLFKSAAPVRR-------DLRSVFHSYAVSMRRQL------------------------------  349 (421)
Q Consensus       307 e~L~~~ipe~~~l~G~l~kSs~pv~L-------~V~~vKHif~~hiVlQf------------------------------  349 (421)
                      .+|+ ++|+|+.| ||+||||.|+.|       +|+|+||+|.+|+||||                              
T Consensus       608 ~~l~-~i~~~~~l-gpl~kSs~~i~LTE~e~e~~v~~vKh~f~~~~V~qf~~~Ntl~d~~L~~v~vv~~~~~~~evl~~i  685 (865)
T KOG1078|consen  608 AELA-SIPEFKAL-GPLFKSSRPIELTEPEAEYVVKVVKHVFKDHVVLQFDCTNTLNDQLLENVSVVLTPTGGEEVLEKV  685 (865)
T ss_pred             HHHh-ccchhhhc-CccccccCcceeccccceEEeeeeehhhccceEEEEeccCcchHHHHhhheeeecCCCCceeeeec
Confidence            9999 99999999 999999999999       99999999999999999                              


Q ss_pred             ----------------------------------------EeeCCCC----Cc------ccceeeccccccccccCCChH
Q psy8503         350 ----------------------------------------DVHSASG----VG------LEDLEISLSDQMAKVNKPNFL  379 (421)
Q Consensus       350 ----------------------------------------dvdp~tg----~g------lEdlei~~~D~i~~~~~~nF~  379 (421)
                                                              ||||+||    ||      |||++++++|||||+.++||.
T Consensus       686 ~~~slpy~qp~~~~tl~~~p~~~p~~v~~sf~~tlkFtvkdcdp~TgepdedGyeDEY~LEdlevtv~D~iqkv~k~NF~  765 (865)
T KOG1078|consen  686 PTMSLPYDQPGSAFTLVEFPKDDPWAIAEGFGNTLKFTVKDCDPNTGEPDDEGYEDEYVLEDLEVTVGDFVQKVRKSNFP  765 (865)
T ss_pred             cccCCCCCCCcceEEEEEcCCCCchhhhccceeeEEEEEEecCCCCCCCCccCcccceeeeceeeehhhhhhHhhcccch
Confidence                                                    9999999    56      999999999999999999999


Q ss_pred             HHHhhhcccCCcccceeeEeccCcccHHHHHHHhhcccCCC
Q psy8503         380 ALWEEAETDESMNEMEDTFCLSKMESIQEAVASILLPFPRY  420 (421)
Q Consensus       380 ~~We~l~~~~~~~e~~~tf~L~~~~sl~~Av~~i~~~fg~~  420 (421)
                      ++||+++     .|.++||+||+.++|+|||++|+.++||-
T Consensus       766 aawde~~-----~e~eetF~Ls~~~tl~eAv~~Ii~~LgMq  801 (865)
T KOG1078|consen  766 AAWDELG-----FEAEETFNLSTVKSIQEAVKKIIDLLGMQ  801 (865)
T ss_pred             hhHHhcC-----cchheeeeccccchHHHHHHHHHHHhCCc
Confidence            9999996     38899999999999999999999999984

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1078|consensus Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1062|consensus Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1062|consensus Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1058|consensus Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
1pzd_A 322 Structural Identification Of A Conserved Appendage 3e-09
1pzd_A322 Structural Identification Of A Conserved Appendage 9e-07
1r4x_A275 Crystal Structure Analys Of The Gamma-Copi Appendag 8e-07
>pdb|1PZD|A Chain A, Structural Identification Of A Conserved Appendage Domain In The Carboxyl-terminus Of The Copi Gamma-subunit Length = 322 Back     alignment and structure 
Iteration: 1

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 58/118 (49%), Gaps = 15/118 (12%)
Query: 241 SIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATA 300
           SIP LERAL  Y L PS  PFD+ S+PL+T   ++      R  +     A +P   A  
Sbjct: 2   SIPGLERALQQYTLEPSEKPFDLKSVPLATAPLAE-----QRTESTPVTAAKQPEKVAAT 56
Query: 301 RVESYYEKLSAALPEIANLPGTLFKSAA-PVRRD-------LRSVFHSYAVSMRRQLD 350
           R E + E+L AA+PE   L G LFKS+  PV          +R   H++   M  Q D
Sbjct: 57  RQEIFQEQL-AAVPEFQGL-GPLFKSSPEPVALTESETEYVIRCTKHTFTDHMVFQFD 112
>pdb|1PZD|A Chain A, Structural Identification Of A Conserved Appendage Domain In The Carboxyl-terminus Of The Copi Gamma-subunit Length = 322 Back     alignment and structure
>pdb|1R4X|A Chain A, Crystal Structure Analys Of The Gamma-Copi Appendage Domain Length = 275 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 1e-30
1pzd_A 322 Coatomer gamma subunit; platform domain, appendage 2e-11
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 2e-10
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 3e-05
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 1e-10
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 2e-04
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 2e-04
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 5e-04
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
 Score =  122 bits (309), Expect = 1e-30
 Identities = 35/267 (13%), Positives = 93/267 (34%), Gaps = 53/267 (19%)

Query: 3   SDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRK 62
            +    +    +  +++  S++++ +++ ++  + +E+  +F    V AI    +K  + 
Sbjct: 328 YNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS 387

Query: 63  HAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTI 122
               ++ L  +++ +  +             V  +  V                     I
Sbjct: 388 AERCVSTLLDLIQTKVNY-------------VVQEAIVV--------------------I 414

Query: 123 ITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVI 182
             I  + P   E+ +A LCE ++  +       ++ ++G+   R     + +        
Sbjct: 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFH 474

Query: 183 LENATVRAAAVTAMAQFGA---------------LCQMDGDD-EVRDRATYYHSILASQN 226
            E+  V+   +TA+ +                  L   D D+ ++RDR   Y  +L S +
Sbjct: 475 DESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLL-STD 533

Query: 227 KQLIQDYIIE---PLMVSIPSLERALH 250
               ++ ++     +      +E  L 
Sbjct: 534 PVTAKEVVLSEKPLISEETDLIEPTLL 560
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Length = 322 Back     alignment and structure
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Length = 322 Back     alignment and structure
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Length = 322 Back     alignment and structure
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Length = 275 Back     alignment and structure
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Length = 275 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 100.0
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 99.97
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.92
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.91
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.9
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.09
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.88
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 97.79
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 97.78
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.52
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 97.42
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.32
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.21
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.2
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 97.19
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.06
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 97.05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 97.03
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 96.98
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 96.86
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.85
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 96.77
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.71
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.6
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.59
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.51
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.46
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.36
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 96.35
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.22
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 96.15
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 95.93
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 95.88
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 95.44
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 95.28
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 95.16
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 94.63
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 94.59
1qgr_A 876 Protein (importin beta subunit); transport recepto 94.22
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 94.16
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 93.89
3hs8_A273 Adaptor protein complex AP-2, alpha 2 subunit; ada 93.75
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 93.37
1qgr_A 876 Protein (importin beta subunit); transport recepto 93.28
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 93.2
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 93.02
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 92.68
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 92.51
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 92.34
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 92.32
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 91.56
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 91.08
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 90.63
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 90.61
3grl_A 651 General vesicular transport factor P115; vesicle t 90.0
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 89.91
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 89.71
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 88.25
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 87.89
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 87.89
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 84.17
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 81.14
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 81.07
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 80.83
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
Probab=100.00  E-value=3.1e-38  Score=310.50  Aligned_cols=170  Identities=40%  Similarity=0.640  Sum_probs=112.7

Q ss_pred             ChHHHHHHHHHhccCCCCCCCccCCCCcccccCCCchhhhhccCCCCCCCCCCccchhhhhHHHHHHHHhhhccccccCC
Q psy8503         241 SIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATARVESYYEKLSAALPEIANLP  320 (421)
Q Consensus       241 s~~~Le~~L~~Y~~~~~~~pfd~~svp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~L~~~ipe~~~l~  320 (421)
                      +++.||++|++|+++++++|||+++||..+.+.   .++.....+.. + .+.+.+.+..+++.|+++|+ +||||++| 
T Consensus         2 sl~~Le~~L~~Y~~~~~~~~Fd~~~Vp~~~~~~---~~~~~~~~~~~-~-~~~~~~~~~~~~~~ya~~L~-~ipef~~l-   74 (322)
T 1pzd_A            2 SIPGLERALQQYTLEPSEKPFDLKSVPLATAPL---AEQRTESTPVT-A-AKQPEKVAATRQEIFQEQLA-AVPEFQGL-   74 (322)
T ss_dssp             -------------------------------------------------------CCCCSHHHHHHHHHH-TCGGGTTC-
T ss_pred             CHHHHHHHHHHHhccCCCCCcccccCcchhhhh---hhhcccccccc-c-ccccccccchhHHHHHHHHh-cchhHHHc-
Confidence            578999999999977889999999999532221   11111100000 0 11122233457789999999 99999999 


Q ss_pred             Ccccccc-cceeE-------EEEEEeeeecceeEEEE-------------------------------------------
Q psy8503         321 GTLFKSA-APVRR-------DLRSVFHSYAVSMRRQL-------------------------------------------  349 (421)
Q Consensus       321 G~l~kSs-~pv~L-------~V~~vKHif~~hiVlQf-------------------------------------------  349 (421)
                      |++|||| +||+|       +|+||||+|++||||||                                           
T Consensus        75 G~l~kSS~~~v~LTE~EtEYvV~~vKHiF~~hiVlQF~~~NTL~dq~LenV~V~~~~~~~~~~~~~ip~~~L~~~~~g~~  154 (322)
T 1pzd_A           75 GPLFKSSPEPVALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPARSLPYNQPGTC  154 (322)
T ss_dssp             CCCCEECSSCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSSCEEEEEECEEEECBTCCEEE
T ss_pred             CcccccCCCcccccCCCceeEEEEEEEeccCcEEEEEEEEEccCceEEeeEEEEEecCCCceEEEEEEHhHCCCCCCeeE
Confidence            9999999 99999       99999999999999999                                           


Q ss_pred             ---------------------------EeeCCCC----Cc------ccceeeccccccccccCCChHHHHhhhcccCCcc
Q psy8503         350 ---------------------------DVHSASG----VG------LEDLEISLSDQMAKVNKPNFLALWEEAETDESMN  392 (421)
Q Consensus       350 ---------------------------dvdp~tg----~g------lEdlei~~~D~i~~~~~~nF~~~We~l~~~~~~~  392 (421)
                                                 ||||+||    +|      ||||+|+++|||+|++++||.++||+++.+   +
T Consensus       155 yv~~~~~~~~~~~~~~~f~~~LkF~vke~Dp~TGe~~deGyeDEY~lEdlel~~~D~i~p~~~~nF~~~We~l~~~---~  231 (322)
T 1pzd_A          155 YTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDE---F  231 (322)
T ss_dssp             EEEEECCSSCTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCCSCHHHHHHHHCST---T
T ss_pred             EEEEEecCCCCCccceEEEEEEEEEEEeecCCCCCcCCCCccceEEccceeechhhEeeecccCchHHHHHhcCCc---c
Confidence                                       9999998    56      999999999999999999999999999866   7


Q ss_pred             cceeeEeccCcccHHHHHHHhhcccCCC
Q psy8503         393 EMEDTFCLSKMESIQEAVASILLPFPRY  420 (421)
Q Consensus       393 e~~~tf~L~~~~sl~~Av~~i~~~fg~~  420 (421)
                      |.++||+|+.+++|++||++|+++|||.
T Consensus       232 E~~~tf~L~~~~sL~~AV~~l~~~Lgm~  259 (322)
T 1pzd_A          232 QKEETFTLSTIKTLEEAVGNIVKFLGMH  259 (322)
T ss_dssp             CEEEEEEESSCCCHHHHHHHHHHHHTCE
T ss_pred             ceEEEEEccCcCcHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999994
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 421
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 4e-19
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 7e-11
d1r4xa2111 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-te 5e-09
d1r4xa2111 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-te 2e-07
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
d1r4xa1163 Coatomer gamma subunit C-terminal domain, first su 99.77
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.64
d1r4xa2111 Coatomer gamma subunit, C-terminal subdomain {Huma 99.14
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.0
d1r4xa2111 Coatomer gamma subunit, C-terminal subdomain {Huma 97.91
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.57
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.53
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.31
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.1
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.91
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 96.64
d1b3ua_588 Constant regulatory domain of protein phosphatase 96.34
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.35
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 95.23
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 94.62
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 93.27
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 93.16
d1kyfa2114 Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus 92.99
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 92.81
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 92.76
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 92.12
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 91.41
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 90.83
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 89.48
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 88.69
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 88.55
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 86.37
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 85.54
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 83.27
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 83.15
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Clathrin adaptor appendage domain
family: Coatomer appendage domain
domain: Coatomer gamma subunit C-terminal domain, first subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-19  Score=161.28  Aligned_cols=49  Identities=39%  Similarity=0.594  Sum_probs=46.9

Q ss_pred             hhhHHHHHHHHhhhccccccCCCcccccc-cceeE-------EEEEEeeeecceeEEEE
Q psy8503         299 TARVESYYEKLSAALPEIANLPGTLFKSA-APVRR-------DLRSVFHSYAVSMRRQL  349 (421)
Q Consensus       299 ~~~~~~y~e~L~~~ipe~~~l~G~l~kSs-~pv~L-------~V~~vKHif~~hiVlQf  349 (421)
                      ..+++.|+++|+ +||||++| |+||||| +||+|       +|+||||+|++||||||
T Consensus         8 ~~~q~~yae~L~-~ipef~~~-G~l~KSs~~pv~LTE~EtEYvV~~vKHiF~~HiVLQF   64 (163)
T d1r4xa1           8 MTRQEIFQEQLA-AVPEFRGL-GPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQF   64 (163)
T ss_dssp             CCHHHHHHHHHH-TSGGGTTS-CSCCEECSSCEECSCTTSSEEEEEEEEECSSEEEEEE
T ss_pred             hhHHHHHHHHHH-cChhHhhc-CcceeccCCceeccCcccEEEEEEEEEeccCcEEEEE
Confidence            457899999999 99999999 9999999 69999       99999999999999999
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure