Psyllid ID: psy8506

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MSSDQCYCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL
Secondary Structure (PSIPRED)
ccccccEEEEEEcccccEEEEEEEEEEEccEEEEEEEEEEccccEEEEEEEEEEEcccccEEEEEEEcccccccccEEEEEEEEccccccccEEEEcEEEEEEEEEEcccccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccccccEEEEEEEEEcccEEEEEEEEEEccccEEEEEEEEEEEEccccEEEEEEcEEEEcEcccEEEEEEEEccccccccEEEEEEEEEEEEEEEccccccEccccEEEEcEEcccccc
Coil and Loop (DISEMBL)
mssdqcycrvmltesETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQleipegyeliketpiprlaynetqSVYIILqyppsladsvTSVGAVLKFSvkdcdpttgqpdsdegyddeYMVSRKGL
Flexible Loop (DISEMBL)
MSSDQCYCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFsvkdcdpttgqpdsdegyddeYMVSRKGL
Low Complexity Region (SEG)
MSSDQCYCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL
Disordered region (IsUnstruct)
*****CYCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKD*************************
Disordered Region (DISOPRED)
*****CY**VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL
Disordered Region (DISEMBL)
MSSDQCYCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL
Disordered Region (DISPRO)
*****CYCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVS****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSDQCYCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q29AE5	878	Coatomer subunit gamma OS	yes	N/A	0.893	0.133	0.564	2e-37
Q8I0G5	883	Coatomer subunit gamma OS	yes	N/A	0.893	0.132	0.547	6e-37
Q7PVF6	868	Coatomer subunit gamma OS	yes	N/A	0.893	0.134	0.564	2e-35
P53620	874	Coatomer subunit gamma-1	yes	N/A	0.885	0.132	0.508	3e-28
Q9Y678	874	Coatomer subunit gamma-1	yes	N/A	0.885	0.132	0.5	7e-28
Q4AEF8	874	Coatomer subunit gamma-1	yes	N/A	0.885	0.132	0.5	7e-28
Q9I8E6	873	Coatomer subunit gamma-2	N/A	N/A	0.885	0.132	0.491	1e-27
Q9UBF2	871	Coatomer subunit gamma-2	no	N/A	0.885	0.133	0.5	2e-27
A2VE21	871	Coatomer subunit gamma-2	no	N/A	0.870	0.130	0.491	2e-27
Q9QZE5	874	Coatomer subunit gamma-1	yes	N/A	0.885	0.132	0.5	2e-27

>sp|Q29AE5|COPG_DROPS Coatomer subunit gamma OS=Drosophila pseudoobscura pseudoobscura GN=gammaCop PE=3 SV=1

 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 86/117 (73%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           + LTESETEY V+CIKH F  H++ Q +  NTLSDQ LENV V+L +PEG+      P P
Sbjct: 639 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQFLENVRVELTLPEGFTTRAVVPCP 698

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L YNE Q+ Y+I+++PP    S+ + GA L+F VKDCDP TG+PDS+EGYDDEYM+
Sbjct: 699 KLPYNELQTTYVIVEFPPDAGSSIATFGATLRFVVKDCDPNTGEPDSEEGYDDEYML 755

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Required for limiting lipid storage in lipid droplets. Involved in the expansion of luminal extracellular matrices and apical membrane during tubulogenesis. Required in the tracheal epithelium for luminal protein secretion and diametric tube growth. In salivary glands, required for deposition of O-glycans and luminal extracellular matrix assembly. Required for epidermal morphogenesis and cuticle development.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q8I0G5|COPG_DROME Coatomer subunit gamma OS=Drosophila melanogaster GN=gammaCop PE=2 SV=1

 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 89/117 (76%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           + LTESETEY V+CIKH F  H++ Q +  NTLSDQ+LENV V+L +PEG+      P P
Sbjct: 644 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVIPCP 703

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L YN+ Q+ ++I+++PP  A+S+ + GA L+F VKDCDP TG+P+S+EGYDDEYM+
Sbjct: 704 KLPYNDLQTTFVIVEFPPDAANSIATFGATLRFVVKDCDPNTGEPESEEGYDDEYML 760

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Required for limiting lipid storage in lipid droplets. Involved in the expansion of luminal extracellular matrices and apical membrane during tubulogenesis. Required in the tracheal epithelium for luminal protein secretion and diametric tube growth. In salivary glands, required for deposition of O-glycans and luminal extracellular matrix assembly. Required for epidermal morphogenesis and cuticle development.

Drosophila melanogaster (taxid: 7227)

>sp|Q7PVF6|COPG_ANOGA Coatomer subunit gamma OS=Anopheles gambiae GN=gammaCop PE=3 SV=2

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 85/117 (72%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEY V CIKH F  H++ Q +  NTLSDQLLENV V LE+PEG+      P  
Sbjct: 639 VQLTESETEYTVSCIKHCFAHHIVFQFDCVNTLSDQLLENVRVDLELPEGFVSRAVIPCA 698

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L Y + +S Y+I+Q+P  +  S+ ++GA L+F VKDCDP TGQPDSDEGY+DEY++
Sbjct: 699 KLPYGDKESTYVIVQFPEDVPSSIATLGATLRFLVKDCDPATGQPDSDEGYNDEYIL 755

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Anopheles gambiae (taxid: 7165)

>sp|P53620|COPG1_BOVIN Coatomer subunit gamma-1 OS=Bos taurus GN=COPG1 PE=1 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV+RC KH+F  H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct: 637 VALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPAR 696

Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+  + Y ++  P     +V  +   V+KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 697 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEAD-DEGYEDEYVL 753

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis.

Bos taurus (taxid: 9913)

>sp|Q9Y678|COPG1_HUMAN Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV+RC KH+F +H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct: 637 VALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPAR 696

Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+  + Y ++  P     +V  +   ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 697 SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 753

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis.

Homo sapiens (taxid: 9606)

>sp|Q4AEF8|COPG1_RAT Coatomer subunit gamma-1 OS=Rattus norvegicus GN=Copg1 PE=2 SV=1

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV+RC KH+F  HL+ Q + +NTL+DQ LENVTVQ+E  E YE++   P+ 
Sbjct: 637 VALTESETEYVIRCTKHTFSDHLVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLSYVPVR 696

Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+  + Y ++  P     +V  +   V+KF+VKDCDP TG+ D +EGY+DEY++
Sbjct: 697 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPNTGEID-EEGYEDEYVL 753

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis.

Rattus norvegicus (taxid: 10116)

>sp|Q9I8E6|COPG2_TAKRU Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 83/118 (70%), Gaps = 2/118 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTE+ETEYVVRCIKH+F  H++ Q + +NTL+DQLL+ V VQ+E  E YE+I   P P
Sbjct: 636 VQLTEAETEYVVRCIKHTFARHMVFQFDCTNTLNDQLLQKVLVQMEPSEAYEVIHYIPAP 695

Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L Y++  S Y +++ P     +V+ +    +K+ V+DCDP TG+PD D+GYDDEY++
Sbjct: 696 SLPYSQPGSCYSLVRLPDDDPTAVSCTFSCTMKYLVRDCDPNTGEPD-DDGYDDEYVL 752

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Takifugu rubripes (taxid: 31033)

>sp|Q9UBF2|COPG2_HUMAN Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 80/118 (67%), Gaps = 2/118 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTE+ETEY VRCIKH F +H++ Q + +NTL+DQLLE VTVQ+E  + YE++   P P
Sbjct: 634 VQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQMEPSDSYEVLSCIPAP 693

Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+    Y +++ P     +V  S    +KF+V+DCDP TG PD D GYDDEY++
Sbjct: 694 SLPYNQPGICYTLVRLPDDDPTAVAGSFSCTMKFTVRDCDPNTGVPDED-GYDDEYVL 750

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors.

Homo sapiens (taxid: 9606)

>sp|A2VE21|COPG2_BOVIN Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 83/120 (69%), Gaps = 6/120 (5%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTE+ETEY VRC+KH F +H++ Q + +NTL+DQLLE VTVQ+E  E YE++   P P
Sbjct: 634 VQLTEAETEYFVRCVKHMFTNHIVFQFDCTNTLNDQLLEKVTVQVEPSEAYEVLCCVPAP 693

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGA---VLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+    Y +++ P    DS+ + G     +KF+V+DCDP TG P ++EGYDDEY++
Sbjct: 694 SLPYNQPGVCYTLVRLPED--DSIAAAGTFSCTMKFTVRDCDPDTGVP-TEEGYDDEYVL 750

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors.

Bos taurus (taxid: 9913)

>sp|Q9QZE5|COPG1_MOUSE Coatomer subunit gamma-1 OS=Mus musculus GN=Copg1 PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 81/118 (68%), Gaps = 2/118 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV+RC KH+F  HL+ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct: 637 VALTESETEYVIRCTKHTFSDHLVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLSYVPAR 696

Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+  + Y ++  P     +V  +   V+KF+VKDCDP TG+ D +EGY+DEY++
Sbjct: 697 SLPYNQPGTCYTLVALPTEDPTAVACTFSCVMKFTVKDCDPNTGEID-EEGYEDEYVL 753

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors (By similarity). Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
91090890	879	PREDICTED: similar to RE62270p [Triboliu	0.893	0.133	0.635	6e-37
242012413	881	Coatomer subunit gamma-2, putative [Pedi	0.893	0.132	0.615	7e-37
194764949	878	GF22968 [Drosophila ananassae] gi|190614	0.893	0.133	0.572	2e-36
195036520	877	GH18636 [Drosophila grimshawi] gi|193893	0.893	0.133	0.572	6e-36
194904877	879	GG11813 [Drosophila erecta] gi|190655715	0.893	0.133	0.564	6e-36
195505467	878	GE10946 [Drosophila yakuba] gi|194185618	0.893	0.133	0.564	6e-36
195144010	766	GL23633 [Drosophila persimilis] gi|19410	0.893	0.152	0.564	1e-35
125774017	878	GA13624, isoform A [Drosophila pseudoobs	0.893	0.133	0.564	1e-35
390177523	877	GA13624, isoform B [Drosophila pseudoobs	0.893	0.133	0.564	1e-35
195390482	877	GJ23086 [Drosophila virilis] gi|19415198	0.893	0.133	0.564	2e-35

>gi|91090890|ref|XP_973414.1| PREDICTED: similar to RE62270p [Tribolium castaneum] gi|270013230|gb|EFA09678.1| hypothetical protein TcasGA2_TC011806 [Tribolium castaneum]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 1/118 (0%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEY VRCIKH F +H++LQ +  NTLSDQLLE+V VQL+  EGY +++E   P
Sbjct: 640 VELTESETEYFVRCIKHCFTNHVVLQFDCLNTLSDQLLEDVRVQLDPSEGYTVLREIACP 699

Query: 70  RLAYNETQSVYIILQYPPS-LADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L YNET S Y++LQ+P + L +SV + GAVLKF VKDCDP TG PD+DEGYDDEYM+
Sbjct: 700 KLPYNETGSAYVVLQFPENDLPNSVGTFGAVLKFIVKDCDPNTGLPDTDEGYDDEYML 757

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012413|ref|XP_002426927.1| Coatomer subunit gamma-2, putative [Pediculus humanus corporis] gi|212511156|gb|EEB14189.1| Coatomer subunit gamma-2, putative [Pediculus humanus corporis]

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 92/117 (78%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV++C+KHSF +HL+LQ +V NTLSDQ+LENV V +E  EG+++IKE  IP
Sbjct: 638 VELTESETEYVIKCVKHSFLNHLVLQFDVLNTLSDQILENVKVAIEPSEGFKIIKEVLIP 697

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L Y ET   +++++YP  +  SV + GA LKF VKDCDPTTG PDSDEGY DEY+V
Sbjct: 698 KLPYGETGHCFVVMEYPDDVIASVGTFGATLKFIVKDCDPTTGLPDSDEGYQDEYLV 754

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194764949|ref|XP_001964590.1| GF22968 [Drosophila ananassae] gi|190614862|gb|EDV30386.1| GF22968 [Drosophila ananassae]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/117 (57%), Positives = 87/117 (74%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           + LTESETEY V+CIKH F  H++ Q +  NTLSDQ LENV V+L +PEG+      P P
Sbjct: 639 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQFLENVRVELTLPEGFTARAVIPCP 698

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L YNE Q+ ++I+++PP  A S+ + GA L+F VKDCDP TG+PDSDEGYDDEYM+
Sbjct: 699 KLPYNELQTTFVIVEFPPDAASSIATFGATLRFVVKDCDPNTGEPDSDEGYDDEYML 755

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195036520|ref|XP_001989718.1| GH18636 [Drosophila grimshawi] gi|193893914|gb|EDV92780.1| GH18636 [Drosophila grimshawi]

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 67/117 (57%), Positives = 88/117 (75%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           + LTESETEY V+CIKH F  H++ Q +  NTLS+Q LENV V+L +PEGY      P P
Sbjct: 638 IQLTESETEYTVQCIKHIFAQHVVFQFDCLNTLSEQFLENVRVELTLPEGYTTRAIIPCP 697

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +LAYNE Q+ ++I+++PP  + S+ + GA L+F VKDCDP TG+PDSDEGYDDEYM+
Sbjct: 698 KLAYNELQTTFVIVEFPPDPSSSIATFGATLRFVVKDCDPVTGEPDSDEGYDDEYML 754

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194904877|ref|XP_001981077.1| GG11813 [Drosophila erecta] gi|190655715|gb|EDV52947.1| GG11813 [Drosophila erecta]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 88/117 (75%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           + LTESETEY V+CIKH F  H++ Q +  NTLSDQ+LENV V+L +PEG+      P P
Sbjct: 640 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTARAVIPCP 699

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L YN+ Q+ ++I+++PP  A S+ + GA L+F VKDCDP TG+PDSDEGYDDEYM+
Sbjct: 700 KLPYNDLQTTFVIVEFPPDAASSIATFGATLRFVVKDCDPNTGEPDSDEGYDDEYML 756

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195505467|ref|XP_002099517.1| GE10946 [Drosophila yakuba] gi|194185618|gb|EDW99229.1| GE10946 [Drosophila yakuba]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 88/117 (75%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           + LTESETEY V+CIKH F  H++ Q +  NTLSDQ+LENV V+L +PEG+      P P
Sbjct: 639 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTARAVIPCP 698

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L YN+ Q+ ++I+++PP  A S+ + GA L+F VKDCDP TG+PDSDEGYDDEYM+
Sbjct: 699 KLPYNDLQTTFVIVEFPPDAASSIATFGATLRFVVKDCDPNTGEPDSDEGYDDEYML 755

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195144010|ref|XP_002012989.1| GL23633 [Drosophila persimilis] gi|194101932|gb|EDW23975.1| GL23633 [Drosophila persimilis]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 86/117 (73%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           + LTESETEY V+CIKH F  H++ Q +  NTLSDQ LENV V+L +PEG+      P P
Sbjct: 527 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQFLENVRVELTLPEGFTTRAVVPCP 586

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L YNE Q+ Y+I+++PP    S+ + GA L+F VKDCDP TG+PDS+EGYDDEYM+
Sbjct: 587 KLPYNELQTTYVIVEFPPDAGSSIATFGATLRFVVKDCDPNTGEPDSEEGYDDEYML 643

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125774017|ref|XP_001358267.1| GA13624, isoform A [Drosophila pseudoobscura pseudoobscura] gi|122098055|sp|Q29AE5.1|COPG_DROPS RecName: Full=Coatomer subunit gamma; AltName: Full=Gamma-coat protein; Short=Gamma-COP gi|54638003|gb|EAL27405.1| GA13624, isoform A [Drosophila pseudoobscura pseudoobscura]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 86/117 (73%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           + LTESETEY V+CIKH F  H++ Q +  NTLSDQ LENV V+L +PEG+      P P
Sbjct: 639 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQFLENVRVELTLPEGFTTRAVVPCP 698

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L YNE Q+ Y+I+++PP    S+ + GA L+F VKDCDP TG+PDS+EGYDDEYM+
Sbjct: 699 KLPYNELQTTYVIVEFPPDAGSSIATFGATLRFVVKDCDPNTGEPDSEEGYDDEYML 755

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390177523|ref|XP_003736402.1| GA13624, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859077|gb|EIM52475.1| GA13624, isoform B [Drosophila pseudoobscura pseudoobscura]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 86/117 (73%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           + LTESETEY V+CIKH F  H++ Q +  NTLSDQ LENV V+L +PEG+      P P
Sbjct: 638 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQFLENVRVELTLPEGFTTRAVVPCP 697

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +L YNE Q+ Y+I+++PP    S+ + GA L+F VKDCDP TG+PDS+EGYDDEYM+
Sbjct: 698 KLPYNELQTTYVIVEFPPDAGSSIATFGATLRFVVKDCDPNTGEPDSEEGYDDEYML 754

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195390482|ref|XP_002053897.1| GJ23086 [Drosophila virilis] gi|194151983|gb|EDW67417.1| GJ23086 [Drosophila virilis]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 87/117 (74%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           + LTESETEY V+CIKH F  H++ Q +  NTL++Q LENV V+L +PEGY        P
Sbjct: 638 IQLTESETEYTVQCIKHIFAQHVVFQFDCLNTLAEQFLENVRVELTLPEGYTARAVLSCP 697

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
           +LAYNE Q+ Y+I+++PP  + S+ + GA L+F VKDCDP TG+PDSDEGYDDEYM+
Sbjct: 698 KLAYNELQTTYVIVEFPPDASSSIATFGATLRFVVKDCDPNTGEPDSDEGYDDEYML 754

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
FB|FBgn0028968	883	gammaCop "gamma-coatomer prote	0.893	0.132	0.547	9.2e-34
UNIPROTKB|F1SPF9	467	COPG1 "Uncharacterized protein	0.885	0.248	0.5	6.3e-28
UNIPROTKB|E2RPG9	874	COPG1 "Coatomer subunit gamma"	0.885	0.132	0.5	2.5e-27
UNIPROTKB|P53620	874	COPG1 "Coatomer subunit gamma-	0.885	0.132	0.508	4.1e-27
RGD|1565292	874	Copg1 "coatomer protein comple	0.885	0.132	0.5	5.3e-27
UNIPROTKB|Q4AEF8	874	Copg1 "Coatomer subunit gamma-	0.885	0.132	0.5	5.3e-27
UNIPROTKB|E1C7T8	871	COPG2 "Coatomer subunit gamma"	0.885	0.133	0.508	6.7e-27
UNIPROTKB|Q9Y678	874	COPG1 "Coatomer subunit gamma-	0.885	0.132	0.5	6.7e-27
UNIPROTKB|Q9UBF2	871	COPG2 "Coatomer subunit gamma-	0.885	0.133	0.5	1.1e-26
UNIPROTKB|F1NB52	874	COPG "Coatomer subunit gamma"	0.885	0.132	0.508	1.4e-26

FB|FBgn0028968 gammaCop "gamma-coatomer protein" [Drosophila melanogaster (taxid:7227)]

 Score = 377 (137.8 bits), Expect = 9.2e-34, P = 9.2e-34
 Identities = 64/117 (54%), Positives = 89/117 (76%)

Query:    10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
             + LTESETEY V+CIKH F  H++ Q +  NTLSDQ+LENV V+L +PEG+      P P
Sbjct:   644 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVIPCP 703

Query:    70 RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
             +L YN+ Q+ ++I+++PP  A+S+ + GA L+F VKDCDP TG+P+S+EGYDDEYM+
Sbjct:   704 KLPYNDLQTTFVIVEFPPDAANSIATFGATLRFVVKDCDPNTGEPESEEGYDDEYML 760

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISS;NAS

GO:0030126 "COPI vesicle coat" evidence=ISS;NAS

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0035149 "lumen formation, open tracheal system" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0009306 "protein secretion" evidence=IMP

GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=IMP

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0007436 "larval salivary gland morphogenesis" evidence=IMP

GO:0005801 "cis-Golgi network" evidence=IDA

UNIPROTKB|F1SPF9 COPG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 313 (115.2 bits), Expect = 6.3e-28, P = 6.3e-28
 Identities = 59/118 (50%), Positives = 83/118 (70%)

Query:    10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
             V LTESETEYV+RC KH+F +H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct:   230 VALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPAR 289

Query:    70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
              L YN+  + Y ++  P     +V  +   ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct:   290 SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 346

GO:0005634 "nucleus" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|E2RPG9 COPG1 "Coatomer subunit gamma" [Canis lupus familiaris (taxid:9615)]

 Score = 317 (116.6 bits), Expect = 2.5e-27, P = 2.5e-27
 Identities = 59/118 (50%), Positives = 82/118 (69%)

Query:    10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
             V LTESETEYV+RC KH+F  H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct:   637 VALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVVSYVPAR 696

Query:    70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
              L YN+  + Y ++  P     +V  +   ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct:   697 SLPYNQPGTCYTLVSLPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 753

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P53620 COPG1 "Coatomer subunit gamma-1" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 4.1e-27, P = 4.1e-27
 Identities = 60/118 (50%), Positives = 82/118 (69%)

Query:    10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
             V LTESETEYV+RC KH+F  H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct:   637 VALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPAR 696

Query:    70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
              L YN+  + Y ++  P     +V  +   V+KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct:   697 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEAD-DEGYEDEYVL 753

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

RGD|1565292 Copg1 "coatomer protein complex, subunit gamma 1" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 5.3e-27, P = 5.3e-27
 Identities = 59/118 (50%), Positives = 82/118 (69%)

Query:    10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
             V LTESETEYV+RC KH+F  HL+ Q + +NTL+DQ LENVTVQ+E  E YE++   P+ 
Sbjct:   637 VALTESETEYVIRCTKHTFSDHLVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLSYVPVR 696

Query:    70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
              L YN+  + Y ++  P     +V  +   V+KF+VKDCDP TG+ D +EGY+DEY++
Sbjct:   697 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPNTGEID-EEGYEDEYVL 753

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0051683 "establishment of Golgi localization" evidence=IMP

GO:0072384 "organelle transport along microtubule" evidence=IMP

UNIPROTKB|Q4AEF8 Copg1 "Coatomer subunit gamma-1" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 5.3e-27, P = 5.3e-27
 Identities = 59/118 (50%), Positives = 82/118 (69%)

Query:    10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
             V LTESETEYV+RC KH+F  HL+ Q + +NTL+DQ LENVTVQ+E  E YE++   P+ 
Sbjct:   637 VALTESETEYVIRCTKHTFSDHLVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLSYVPVR 696

Query:    70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
              L YN+  + Y ++  P     +V  +   V+KF+VKDCDP TG+ D +EGY+DEY++
Sbjct:   697 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPNTGEID-EEGYEDEYVL 753

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

UNIPROTKB|E1C7T8 COPG2 "Coatomer subunit gamma" [Gallus gallus (taxid:9031)]

 Score = 313 (115.2 bits), Expect = 6.7e-27, P = 6.7e-27
 Identities = 60/118 (50%), Positives = 81/118 (68%)

Query:    10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
             V LTE+ETEY VRCIKH F +H++ Q + +NTL+DQLLE VTVQ+E  + Y++I   P P
Sbjct:   634 VQLTEAETEYFVRCIKHVFTNHIVFQFDCTNTLNDQLLERVTVQMEPSDAYDVICCIPAP 693

Query:    70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
              LAYN+    Y ++Q P     +V  +    +KF+V+DCDP TG PD D GYDDEY++
Sbjct:   694 SLAYNQPGMCYTLVQMPQDDPTAVACTFSCTMKFTVRDCDPNTGVPDED-GYDDEYVL 750

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q9Y678 COPG1 "Coatomer subunit gamma-1" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 6.7e-27, P = 6.7e-27
 Identities = 59/118 (50%), Positives = 83/118 (70%)

Query:    10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
             V LTESETEYV+RC KH+F +H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct:   637 VALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPAR 696

Query:    70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
              L YN+  + Y ++  P     +V  +   ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct:   697 SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 753

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

GO:0051683 "establishment of Golgi localization" evidence=ISS

GO:0072384 "organelle transport along microtubule" evidence=ISS

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q9UBF2 COPG2 "Coatomer subunit gamma-2" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 59/118 (50%), Positives = 80/118 (67%)

Query:    10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
             V LTE+ETEY VRCIKH F +H++ Q + +NTL+DQLLE VTVQ+E  + YE++   P P
Sbjct:   634 VQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQMEPSDSYEVLSCIPAP 693

Query:    70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
              L YN+    Y +++ P     +V  S    +KF+V+DCDP TG PD D GYDDEY++
Sbjct:   694 SLPYNQPGICYTLVRLPDDDPTAVAGSFSCTMKFTVRDCDPNTGVPDED-GYDDEYVL 750

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

UNIPROTKB|F1NB52 COPG "Coatomer subunit gamma" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 60/118 (50%), Positives = 82/118 (69%)

Query:    10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
             V LTE ETEYVVRC KH+F SH++ Q + +NTL+DQ+LENVTVQ+E  EGYE+I   P  
Sbjct:   637 VALTELETEYVVRCTKHTFVSHMVFQFDCTNTLNDQILENVTVQMEPTEGYEVIGYIPAK 696

Query:    70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
              L YN+  + Y ++        +V  +   ++KF+VKDCDP TG+ D DEGY+DEY++
Sbjct:   697 SLVYNQPGTCYTLVALSEEDPTAVACTFSCMMKFTVKDCDPNTGETD-DEGYEDEYVL 753

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P53620	COPG1_BOVIN	No assigned EC number	0.5084	0.8854	0.1327	yes	N/A
Q29AE5	COPG_DROPS	No assigned EC number	0.5641	0.8931	0.1332	yes	N/A
Q8I0G5	COPG_DROME	No assigned EC number	0.5470	0.8931	0.1325	yes	N/A
Q7PVF6	COPG_ANOGA	No assigned EC number	0.5641	0.8931	0.1347	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	131
pfam08752	269	pfam08752, Gamma-COP, Coatomer gamma subunit appen	3e-48
COG5240	898	COG5240, SEC21, Vesicle coat complex COPI, gamma s	8e-13

>gnl|CDD|220003 pfam08752, Gamma-COP, Coatomer gamma subunit appendage domain

 Score =  155 bits (393), Expect = 3e-48
 Identities = 62/119 (52%), Positives = 88/119 (73%), Gaps = 2/119 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPE-GYELIKETPI 68
           + LTESETEYVV  +KH F++H++LQ  ++NTL+DQ+LENV+V+LE  E  YE +   PI
Sbjct: 28  IPLTESETEYVVSVVKHIFKNHIVLQFNITNTLNDQVLENVSVELEPSEEEYEELFIIPI 87

Query: 69  PRLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            +L YN+  SVY++L+ P    DS + +    LKF+VK+ DPTTG+P+SDEGY+DEY +
Sbjct: 88  DKLPYNQPGSVYVLLEKPEGEDDSGSETFSNTLKFTVKEIDPTTGEPESDEGYEDEYQI 146

COPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This domain corresponds to the coatomer gamma subunit appendage domain. It contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta,epsilon COPI subcomplex. Length = 269

>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

 Score = 63.5 bits (154), Expect = 8e-13
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           ++LTE E E+VV+ +KH F+  L+LQ  + NTL    L N  V L  P G +  +E+   
Sbjct: 664 IILTEPEAEFVVKVVKHVFKDRLVLQFLLENTLEGIQLSNGIVVL-TPTGGDKKEESIKV 722

Query: 70  RLAYNETQSVYIILQYPPSLADSVTSVGAV---LKFSVKDCDPTTGQPDSDEGYDDEY 124
               + ++    I+++     D     G V   L F+ K+ +  T +P+ DEG+ DEY
Sbjct: 723 -DQIDSSEGTLSIVRF--KKLDWDIEEGYVVNGLFFTTKEIEGDTSEPE-DEGFQDEY 776

Length = 898

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
PF08752	151	COP-gamma_platf: Coatomer gamma subunit appendage	100.0
KOG1078|consensus	865		100.0
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.92
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	94.75

>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=9e-58  Score=347.66  Aligned_cols=125  Identities=50%  Similarity=0.816  Sum_probs=94.4

Q ss_pred             cccceecccCCceEEEEEEEEEcCccEEEEEEeeecCCcceeeeeEEEEecCC-ceeEEEEEecCCcCCCCCceEEEEEE
Q psy8506           6 CYCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPE-GYELIKETPIPRLAYNETQSVYIILQ   84 (131)
Q Consensus         6 ~~~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~v~NTl~dq~LenV~V~~~~~~-~~~~~~~ipi~~L~~~~~~~~yvvl~   84 (131)
                      .|+||+|||+||||+|+|+||+|++||||||+|+|||+||+|+||+|++++++ .|++.+.+||++|+||++|++||+|+
T Consensus        24 Ss~~v~LTE~EtEY~V~~vKHiF~~hiVlQF~v~NTL~dq~LenV~V~~~~~~~~~~~~~~ipi~~L~~~~~~~~yV~l~  103 (151)
T PF08752_consen   24 SSKPVELTESETEYVVSCVKHIFAEHIVLQFNVTNTLNDQVLENVSVVLEPSEEEFEEVFIIPIPSLPYNEPGSCYVVLK  103 (151)
T ss_dssp             E-S-EE-S-TTSSEEEEEEEEE-SSEEEEEEEEEE--TTEEEEEEEEEEEESSS--EEEEEE-EEEE-CT--EEEEEEEE
T ss_pred             cCCCEeccCcccEEEEEEEEEEecccEEEEEEEeeccCceeeeeEEEEEecCCceEEEEEEEEhhhCCCCCCeeEEEEEE
Confidence            46799999999999999999999999999999999999999999999999984 49999999999999999999999999


Q ss_pred             cCCCCccceeeEEEEEEEEEeecCCCCCCCCCCCCccceEecCcccC
Q psy8506          85 YPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL  131 (131)
Q Consensus        85 ~~~~~~~~~~~f~~~LkF~vke~dp~tge~~~~~gy~DEY~lEdl~l  131 (131)
                      |+++...++|+|+|+|||++|||||+||+|+ ++||+|||+||||+|
T Consensus       104 ~~~~~~~~~~~f~~~LkF~vke~Dp~tge~~-~~GyeDEY~lEdlel  149 (151)
T PF08752_consen  104 RPPPGSIPSGTFSNTLKFTVKEVDPSTGEPE-DEGYEDEYQLEDLEL  149 (151)
T ss_dssp             -SSSTT---EEEEEEEEEEEEEB-TTT--B--S--EEEEEE---EEE
T ss_pred             eCCCCCceeeeEEeEEEEEEEeecCCCCCcC-CCCccceEEeccEEE
Confidence            9766667899999999999999999999998 799999999999975

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.

>KOG1078|consensus

Probab=100.00  E-value=7.1e-41  Score=302.07  Aligned_cols=124  Identities=44%  Similarity=0.782  Sum_probs=117.1

Q ss_pred             ccceecccCCceEEEEEEEEEcCccEEEEEEeeecCCcceeeeeEEEEecCCceeEEEEEecCCcCCCCCceEEEEEEcC
Q psy8506           7 YCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYP   86 (131)
Q Consensus         7 ~~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~~~~~ipi~~L~~~~~~~~yvvl~~~   86 (131)
                      +.|+.|||+||||+|+|+||+|.+|+||||+|+|||+||+|+||+|++.+.++|+.+..+|+++||||++|++|++++.|
T Consensus       626 s~~i~LTE~e~e~~v~~vKh~f~~~~V~qf~~~Ntl~d~~L~~v~vv~~~~~~~evl~~i~~~slpy~qp~~~~tl~~~p  705 (865)
T KOG1078|consen  626 SRPIELTEPEAEYVVKVVKHVFKDHVVLQFDCTNTLNDQLLENVSVVLTPTGGEEVLEKVPTMSLPYDQPGSAFTLVEFP  705 (865)
T ss_pred             cCcceeccccceEEeeeeehhhccceEEEEeccCcchHHHHhhheeeecCCCCceeeeeccccCCCCCCCcceEEEEEcC
Confidence            47999999999999999999999999999999999999999999999998866999999999999999999999999998


Q ss_pred             CCCcc-ceeeEEEEEEEEEeecCCCCCCCCCCCCccceEecCcccC
Q psy8506          87 PSLAD-SVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL  131 (131)
Q Consensus        87 ~~~~~-~~~~f~~~LkF~vke~dp~tge~~~~~gy~DEY~lEdl~l  131 (131)
                      ++.+. .+|+|+|+|+|++|||||+||+|+ ||||+|||.|||+++
T Consensus       706 ~~~p~~v~~sf~~tlkFtvkdcdp~Tgepd-edGyeDEY~LEdlev  750 (865)
T KOG1078|consen  706 KDDPWAIAEGFGNTLKFTVKDCDPNTGEPD-DEGYEDEYVLEDLEV  750 (865)
T ss_pred             CCCchhhhccceeeEEEEEEecCCCCCCCC-ccCcccceeeeceee
Confidence            75433 667999999999999999999999 999999999999985

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.92  E-value=2.4e-25  Score=198.52  Aligned_cols=122  Identities=27%  Similarity=0.328  Sum_probs=106.3

Q ss_pred             ccceecccCCceEEEEEEEEEcCccEEEEEEeeecCCcceeeeeEEEEecC-CceeEEEEEecCCcCCCCCceEEEEEEc
Q psy8506           7 YCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIP-EGYELIKETPIPRLAYNETQSVYIILQY   85 (131)
Q Consensus         7 ~~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~v~NTl~dq~LenV~V~~~~~-~~~~~~~~ipi~~L~~~~~~~~yvvl~~   85 (131)
                      +.|+.|||+|+|++|+++||+|++|+||||.++|||.+.+|+|+.|.+.|. +.-...+..|.+ +.-+++..+||.|++
T Consensus       661 sr~i~LTEpeaefvVkvvKhvfkD~lVlqF~l~NtL~~i~l~n~~vv~tp~~~d~~ee~i~~~q-ids~e~~~~~v~fk~  739 (898)
T COG5240         661 SREIILTEPEAEFVVKVVKHVFKDRLVLQFLLENTLEGIQLSNGIVVLTPTGGDKKEESIKVDQ-IDSSEGTLSIVRFKK  739 (898)
T ss_pred             cCceeecCCcceeeehhhhhhhccceEEEEEeccchhheeeccceEEEcCCCccchhheeehhh-hccCCCceEEEEecc
Confidence            479999999999999999999999999999999999999999999999986 333344444443 556899999999999


Q ss_pred             CCCCccceeeEEEEEEEEEeecCCCCCCCCCCCCccceEecCcccC
Q psy8506          86 PPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL  131 (131)
Q Consensus        86 ~~~~~~~~~~f~~~LkF~vke~dp~tge~~~~~gy~DEY~lEdl~l  131 (131)
                      .+... --|.|.|.|.|+.||+|+.||||+ |+||+|||.|+++.+
T Consensus       740 ~d~~~-~eg~~~N~l~ftTkeI~~dt~epe-degfqDey~id~~~i  783 (898)
T COG5240         740 LDWDI-EEGYVVNGLFFTTKEIEGDTSEPE-DEGFQDEYSIDPFQI  783 (898)
T ss_pred             ccccc-ccceEeccceEEEEeecCCCCCcc-ccccccceeccceee
Confidence            76443 457899999999999999999998 899999999999864

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=94.75  E-value=0.44  Score=31.46  Aligned_cols=69  Identities=25%  Similarity=0.432  Sum_probs=37.7

Q ss_pred             cEEEEEEeeecCCcceeeeeEEEEecCCcee-EEEEEecCCcCCCCCceEEEEEEcCCCCccceee--EEEEEEE
Q psy8506          31 HLILQLEVSNTLSDQLLENVTVQLEIPEGYE-LIKETPIPRLAYNETQSVYIILQYPPSLADSVTS--VGAVLKF  102 (131)
Q Consensus        31 hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~-~~~~ipi~~L~~~~~~~~yvvl~~~~~~~~~~~~--f~~~LkF  102 (131)
                      .+-+.+.++|.-. .-+.|+++.++..++|. ....-.+..|++|++...=+.+.-|.+.  ..|.  +..+++|
T Consensus         6 ~~~~~~tv~N~g~-~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a--~~G~y~v~~~a~y   77 (78)
T PF10633_consen    6 TVTVTLTVTNTGT-APLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA--APGTYTVTVTARY   77 (78)
T ss_dssp             EEEEEEEEE--SS-S-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT----SEEEEEEEEEE-
T ss_pred             EEEEEEEEEECCC-CceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC--CCceEEEEEEEEe
Confidence            4568899999884 44689999999888888 2222344489999988876667666543  2354  4444444

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
1pzd_A	322	Structural Identification Of A Conserved Appendage		5e-29
1r4x_A	275	Crystal Structure Analys Of The Gamma-Copi Appendag		6e-29

>pdb|1PZD|A Chain A, Structural Identification Of A Conserved Appendage Domain In The Carboxyl-terminus Of The Copi Gamma-subunit Length = 322

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV+RC KH+F  H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct: 85  VALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPAR 144
Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+  + Y ++  P     +V  +   V+KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 145 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEAD-DEGYEDEYVL 201

>pdb|1R4X|A Chain A, Crystal Structure Analys Of The Gamma-Copi Appendage Domain Length = 275

Iteration: 1
 Score =  122 bits (306), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV+RC KH+F +H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct: 38  VALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLXYVPAR 97
Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+  + Y ++  P     +V  +   ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 98  SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
1pzd_A	322	Coatomer gamma subunit; platform domain, appendage	4e-42
1r4x_A	275	Gamma1-COP, coatomer gamma subunit; appendage, bet	1e-41

>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Length = 322

 Score =  140 bits (354), Expect = 4e-42
 Identities = 60/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV+RC KH+F  H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct: 85  VALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPAR 144

Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+  + Y ++  P     +V  +   V+KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 145 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEAD-DEGYEDEYVL 201

>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Length = 275

 Score =  138 bits (348), Expect = 1e-41
 Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV+RC KH+F +H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct: 38  VALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLXYVPAR 97

Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+  + Y ++  P     +V  +   ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 98  SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
1r4x_A	275	Gamma1-COP, coatomer gamma subunit; appendage, bet	100.0
1pzd_A	322	Coatomer gamma subunit; platform domain, appendage	100.0
2xzz_A	102	Protein-glutamine gamma-glutamyltransferase K; 2.3	89.86

>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2

Probab=100.00  E-value=7.8e-54  Score=350.49  Aligned_cols=123  Identities=47%  Similarity=0.836  Sum_probs=116.6

Q ss_pred             cceecccCCceEEEEEEEEEcCccEEEEEEeeecCCcceeeeeEEEEecCCceeEEEEEecCCcCCCCCceEEEEEEcCC
Q psy8506           8 CRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPP   87 (131)
Q Consensus         8 ~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~~~~~ipi~~L~~~~~~~~yvvl~~~~   87 (131)
                      +||+|||+||||+|+||||+|++||||||+|+|||+||+|+||+|.+++++++++.+.+||++|+||++|++||+|++++
T Consensus        36 ~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~i~NTL~dq~LenVsV~~~~~d~~~~~~~ipi~~L~~~~~g~~yV~l~~~~  115 (275)
T 1r4x_A           36 EPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLXYVPARSLPYNQPGTCYTLVALPK  115 (275)
T ss_dssp             SCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSSCEEEEEECEEEECTTCCEEEEEEEECCS
T ss_pred             CcccccCCCCceEEEEEEEecCCcEEEEEEeEEccCcEEEeeEEEEEEcCCCceEEEeeeccccCCCCCccEEEEEEcCC
Confidence            79999999999999999999999999999999999999999999999998667999999999999999999999999985


Q ss_pred             -CCccceeeEEEEEEEEEeecCCCCCCCCCCCCccceEecCcccC
Q psy8506          88 -SLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL  131 (131)
Q Consensus        88 -~~~~~~~~f~~~LkF~vke~dp~tge~~~~~gy~DEY~lEdl~l  131 (131)
                       +...++++|+|+|||++|||||+||+|+ |+||+|||+||||+|
T Consensus       116 ~~~~~~~~tf~~~LkF~vke~Dp~tGe~~-deGyeDEY~lEdlel  159 (275)
T 1r4x_A          116 EDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVLEDLEV  159 (275)
T ss_dssp             SSTTCCCEEEEEEEEEEEEEBCTTTCCBC-SCCEEEEEECCCEEE
T ss_pred             CccccccceeEEEEEEEEEeccCCCCCcC-CCCccceEEccceee
Confidence             3345789999999999999999999998 899999999999985

>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2

Probab=100.00  E-value=9.5e-54  Score=356.00  Aligned_cols=123  Identities=48%  Similarity=0.835  Sum_probs=117.0

Q ss_pred             cceecccCCceEEEEEEEEEcCccEEEEEEeeecCCcceeeeeEEEEecCCceeEEEEEecCCcCCCCCceEEEEEEcCC
Q psy8506           8 CRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPP   87 (131)
Q Consensus         8 ~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~~~~~ipi~~L~~~~~~~~yvvl~~~~   87 (131)
                      +||+|||+||||+|+||||+|++||||||+|+|||+||+|+||+|+++++++|++.+.|||++|+||++|++||+|++++
T Consensus        83 ~~v~LTE~EtEYvV~~vKHiF~~hiVlQF~~~NTL~dq~LenV~V~~~~~~~~~~~~~ip~~~L~~~~~g~~yv~~~~~~  162 (322)
T 1pzd_A           83 EPVALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPARSLPYNQPGTCYTLVALPK  162 (322)
T ss_dssp             SCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSSCEEEEEECEEEECBTCCEEEEEEEECCS
T ss_pred             CcccccCCCceeEEEEEEEeccCcEEEEEEEEEccCceEEeeEEEEEecCCCceEEEEEEHhHCCCCCCeeEEEEEEecC
Confidence            79999999999999999999999999999999999999999999999998669999999999999999999999999985


Q ss_pred             -CCccceeeEEEEEEEEEeecCCCCCCCCCCCCccceEecCcccC
Q psy8506          88 -SLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL  131 (131)
Q Consensus        88 -~~~~~~~~f~~~LkF~vke~dp~tge~~~~~gy~DEY~lEdl~l  131 (131)
                       +...++++|+|+|||++|||||+||+|+ |+||+|||+||||+|
T Consensus       163 ~~~~~~~~~f~~~LkF~vke~Dp~TGe~~-deGyeDEY~lEdlel  206 (322)
T 1pzd_A          163 EDPTAVACTFSCVMKFTVKDCDPTTGEAD-DEGYEDEYVLEDLEV  206 (322)
T ss_dssp             SCTTCCCEEEEEEEEEEEEEBCTTTCCBC-SCCEEEEEECCCEEE
T ss_pred             CCCCccceEEEEEEEEEEEeecCCCCCcC-CCCccceEEccceee
Confidence             3445789999999999999999999998 899999999999985

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}

Probab=89.86  E-value=2.8  Score=28.75  Aligned_cols=53  Identities=23%  Similarity=0.133  Sum_probs=41.9

Q ss_pred             CccEEEEEEeeecCCcceeeeeEEEEecCCceeEEEEEecCCcCCCCCceEEEEE
Q psy8506          29 QSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIIL   83 (131)
Q Consensus        29 ~~hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~~~~~ipi~~L~~~~~~~~yvvl   83 (131)
                      .+-++.++..+|.|+ ..|+|+.+.+|.++.... ..+.+..++++++...=+-+
T Consensus        19 ~~~l~v~vsf~NPL~-~~L~~c~~~vEG~GL~~~-~~~~~~~v~pg~~~~~~~~~   71 (102)
T 2xzz_A           19 GQECEVQIVFKNPLP-VTLTNVVFRLEGSGLQRP-KILNVGDIGGNETVTLRQSF   71 (102)
T ss_dssp             SSCEEEEEEEECCSS-SCBCSEEEEEEETTTEEE-EEEEECCBCTTCEEEEEEEE
T ss_pred             CCeEEEEEEEECCCC-CcccCEEEEEECCCCCcc-eEEEcCcCCCCCEEEEEEEE
Confidence            356788999999995 679999999998876666 67888999999986654433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1r4xa1	163	b.1.10.3 (A:600-762) Coatomer gamma subunit C-term	2e-46

>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Clathrin adaptor appendage domain
family: Coatomer appendage domain
domain: Coatomer gamma subunit C-terminal domain, first subdomain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (368), Expect = 2e-46
 Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV+RC KH+F +H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct: 38  VALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPAR 97

Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+  + Y ++  P     +V  +   ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 98  SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1r4xa1	163	Coatomer gamma subunit C-terminal domain, first su	100.0
d2q3za3	98	Transglutaminase, two C-terminal domains {Human (H	89.16
d1vjja3	99	Transglutaminase, two C-terminal domains {Human (H	89.05
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	87.24
d1ex0a3	100	Transglutaminase, two C-terminal domains {Human (H	85.64
d1g0da3	101	Transglutaminase, two C-terminal domains {Red sea	81.65

>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Clathrin adaptor appendage domain
family: Coatomer appendage domain
domain: Coatomer gamma subunit C-terminal domain, first subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-57  Score=343.99  Aligned_cols=124  Identities=47%  Similarity=0.810  Sum_probs=117.2

Q ss_pred             ccceecccCCceEEEEEEEEEcCccEEEEEEeeecCCcceeeeeEEEEecCCceeEEEEEecCCcCCCCCceEEEEEEcC
Q psy8506           7 YCRVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYP   86 (131)
Q Consensus         7 ~~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~~~~~ipi~~L~~~~~~~~yvvl~~~   86 (131)
                      ++||+|||+||||+|+|+||+|++||||||+|+|||+||+|+||+|.++++++|++.+.+||++|+||++|++||+++++
T Consensus        35 ~~pv~LTE~EtEYvV~~vKHiF~~HiVLQF~v~NTL~dq~LenVsV~~~~~e~~~~~~~ipi~~L~~~~~g~~yv~~~~~  114 (163)
T d1r4xa1          35 PEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPARSLPYNQPGTCYTLVALP  114 (163)
T ss_dssp             SSCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSSCEEEEEECEEEECTTCCEEEEEEEECC
T ss_pred             CCceeccCcccEEEEEEEEEeccCcEEEEEEeeeccCceEeeeEEEEEecCCCcEEEEEEEccccCCCCCccEEEEEEec
Confidence            36999999999999999999999999999999999999999999999999888999999999999999999999999998


Q ss_pred             CCC-ccceeeEEEEEEEEEeecCCCCCCCCCCCCccceEecCcccC
Q psy8506          87 PSL-ADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL  131 (131)
Q Consensus        87 ~~~-~~~~~~f~~~LkF~vke~dp~tge~~~~~gy~DEY~lEdl~l  131 (131)
                      ... ..++|+|+|+|||++|||||+||+|+ |+||+|||+||||+|
T Consensus       115 ~~~~~~~~~tf~~~LkFtvkE~Dp~tge~~-deGyeDEY~lEdlei  159 (163)
T d1r4xa1         115 KEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVLEDLEV  159 (163)
T ss_dssp             SSSTTCCCEEEEEEEEEEEEEBCTTTCCBC-SCCEEEEEECCCEEE
T ss_pred             CcCCcceeeEEeeEEEEEEEeccCCCCCcC-CCCCcceEEccCEEE
Confidence            633 34678999999999999999999998 999999999999975

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), tissue isozyme [TaxId: 9606]

Probab=89.16  E-value=0.87  Score=29.54  Aligned_cols=53  Identities=26%  Similarity=0.259  Sum_probs=39.4

Q ss_pred             ccEEEEEEeeecCCcceeeeeEEEEecCCceeEEEEEecC-CcCCCCCceEEEEE
Q psy8506          30 SHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP-RLAYNETQSVYIIL   83 (131)
Q Consensus        30 ~hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~~~~~ipi~-~L~~~~~~~~yvvl   83 (131)
                      +-+...+..+|.|. ..|+|+.+.++.++.......+.++ .+++|++-+.-+-|
T Consensus        16 ~~~~v~vsF~NPL~-~~L~~c~~~vEG~GL~~~~~~~~~~~~v~pg~~~~~~~~~   69 (98)
T d2q3za3          16 RKLVAEVSLQNPLP-VALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDL   69 (98)
T ss_dssp             SCEEEEEEEECCSS-SCBCSEEEEEECTTTCSSCEEEEECSCBCTTCEEEEEEEE
T ss_pred             CeEEEEEEEECCCC-CchhCEEEEEEcCCcCcCcEEEeCCCccCCCCEEEEEEEE
Confidence            45677889999994 6799999999987655555556665 48899886655544

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=89.05  E-value=0.61  Score=30.38  Aligned_cols=53  Identities=17%  Similarity=0.124  Sum_probs=40.6

Q ss_pred             ccEEEEEEeeecCCcceeeeeEEEEecCCceeEEEEEecCCcCCCCCceEEEEE
Q psy8506          30 SHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIIL   83 (131)
Q Consensus        30 ~hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~~~~~ipi~~L~~~~~~~~yvvl   83 (131)
                      +-+...+..+|.|+ ..|+|+.+.++.++.......+.+..+.+|++..+-+-|
T Consensus        15 ~~~~v~vsf~NPL~-~~L~~c~f~vEG~GL~~~~~~~~~~~v~p~~~~~~~~~~   67 (99)
T d1vjja3          15 KPVNVQMLFSNPLD-EPVRDCVLMVEGSGLLLGNLKIDVPTLGPKERSRVRFDI   67 (99)
T ss_dssp             SCEEEEEEEECCSS-SCBCSEEEEEECTTTSSSCEEEEECCBCTTCEEEEEEEE
T ss_pred             CeEEEEEEEECCCC-CchhCEEEEEEeCCCCCccEEEecCccCCCCEEEEEEEE
Confidence            44677889999995 679999999998765555556677889999987765544

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=87.24  E-value=2.5  Score=27.20  Aligned_cols=70  Identities=9%  Similarity=0.143  Sum_probs=51.2

Q ss_pred             ccEEEEEEeeecCCcceeeeeEEEEecCCceeEEEEEecCCcCCCCCceEEEEEEcCCCCccceeeEEEEEEEEE
Q psy8506          30 SHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSV  104 (131)
Q Consensus        30 ~hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~~~~~ipi~~L~~~~~~~~yvvl~~~~~~~~~~~~f~~~LkF~v  104 (131)
                      +-+=+...|+|.-+ .-+.|+++.++...+|+...  ....|++|+..+.-+.+.-|.+.  ..|.+.-+++.+.
T Consensus        17 ~~~~~~vtVtN~g~-~~~~~~~~~~~~P~GW~v~~--~~~~L~pG~s~~~~~~Vt~p~~a--~~G~Y~i~~~a~~   86 (103)
T d1w8oa1          17 QQVTVPVAVTNQSG-IAVPKPSLQLDASPDWQVQG--SVEPLMPGRQAKGQVTITVPAGT--TPGRYRVGATLRT   86 (103)
T ss_dssp             CEEEEEEEEECCSS-SCBSSCEEEEECCTTSEEEE--EECCBCTTCEEEEEEEEECCTTC--CCEEEEEEEEEEE
T ss_pred             CeEEEEEEEEeCCC-CceeeeeEEEcCCCCccccC--cceeeCCCCcEEEEEEEECCCCC--CCceEEEEEEEEe
Confidence            44567789999985 56679999998778898753  33469999999998888776543  4576666665543

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=85.64  E-value=1.5  Score=28.39  Aligned_cols=52  Identities=21%  Similarity=0.196  Sum_probs=40.2

Q ss_pred             ccEEEEEEeeecCCcceeeeeEEEEecCCceeEEEEEecCCcCCCCCceEEEEE
Q psy8506          30 SHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIIL   83 (131)
Q Consensus        30 ~hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~~~~~ipi~~L~~~~~~~~yvvl   83 (131)
                      +-+...+..+|.|+ ..|+|+.+.++.++... ...+....++++++-..-+-|
T Consensus        17 ~~~~v~v~F~NPL~-~~L~nc~~~vEG~GL~~-~~~~~~~~v~p~~~~~~~~~~   68 (100)
T d1ex0a3          17 SDMTVTVQFTNPLK-ETLRNVWVHLDGPGVTR-PMKKMFREIRPNSTVQWEEVC   68 (100)
T ss_dssp             SCEEEEEEEECCSS-SCEEEEEEEEEETTTEE-EEEEEEEEECTTCEEEEEEEE
T ss_pred             CeEEEEEEEECCCC-CchhCEEEEEEcCCCce-eeEEecCccCCCCEEEEEEEE
Confidence            45677889999995 67999999999876554 346788889999987765544

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=81.65  E-value=2.9  Score=26.95  Aligned_cols=52  Identities=17%  Similarity=0.090  Sum_probs=37.4

Q ss_pred             ccEEEEEEeeecCCcceeeeeEEEEecCCceeEEEEEec-CCcCCCCCceEEEEE
Q psy8506          30 SHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPI-PRLAYNETQSVYIIL   83 (131)
Q Consensus        30 ~hiVlQF~v~NTl~dq~LenV~V~~~~~~~~~~~~~ipi-~~L~~~~~~~~yvvl   83 (131)
                      +-+...+..+|.|+ ..|+|+.+.++.++...... +.. ..+++|++-.+-+-|
T Consensus        16 ~~~~v~vsf~NPL~-~~L~~c~~~vEG~GL~~~~~-~~~~~~v~p~~~~~~~~~~   68 (101)
T d1g0da3          16 EPLTAYVSFTNPLP-VPLKGGVFTLEGAGLLSATQ-IHVNGAVAPSGKVSVKLSF   68 (101)
T ss_dssp             CCEEEEEEEECCSS-SCEESCEEEEEETTTEEEEE-EECSSEECTTCEEEEEEEE
T ss_pred             CeEEEEEEEECCCC-CeecCEEEEEEcCCCCcccE-EEecCCcCCCCEEEEEEEE
Confidence            34677889999994 67999999999876544333 453 578898886654444