Psyllid ID: psy8513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
VARIPSAILGSETALCTETAKSLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHcccccHHHHHHHcccccccccccccccccccccHcccccccccccccHHHHccccccccccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccHcccccHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
varipsailgsetALCTETAKSLELKCWNclkslsgkslfcqhcssvqkpdpqnnyynVFDMKMQYLINNADLSKKFKHLqsqlhpdkfsnknQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQnisieedskgtDQKLLMEILMLNEeldeasseedLENLQTSIRATIEELTKKVNN
Flexible Loop (DISEMBL)
varipsailgsetalCTETAKSLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISieedskgtDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN
Low Complexity Region (SEG)
VARIPSAILGSETALCTETAKSLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEEDSKGTDQKllmeilmlneeldeasseedlenlQTSIRATIEELTKKVNN
Disordered region (IsUnstruct)
*******ILGSETALCTETAKSLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSK**************************TYSSYLNKAYSILQNPLKRGLYLLSLQNISI**********LLMEILM**********************************
Disordered Region (DISOPRED)
*****************************CLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHP***************TYSSYLNKAYSILQNPLKRGLYLLSLQNI*********DQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTK****
Disordered Region (DISEMBL)
VARIPSAILGSETALCTETAKSLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEEDSKGTDQKLLMEILMLNEELD*********NLQTSIRATIEELTKKVNN
Disordered Region (DISPRO)
**RIPSAILGSETALCTETAKSLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VARIPSAILGSETALCTETAKSLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEEDSKGTDQKLLMEILMLNEELDEASSxxxxxxxxxxxxxxxxxxxxxVNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q8K3A0	234	Iron-sulfur cluster co-ch	yes	N/A	0.939	0.735	0.372	6e-32
Q8IWL3	235	Iron-sulfur cluster co-ch	yes	N/A	0.863	0.672	0.364	2e-27
B4EZU5	173	Co-chaperone protein HscB	yes	N/A	0.672	0.710	0.370	3e-17
A1JKQ5	174	Co-chaperone protein HscB	yes	N/A	0.601	0.632	0.387	8e-16
B1JRZ1	174	Co-chaperone protein HscB	yes	N/A	0.677	0.712	0.344	8e-16
A4TMV1	174	Co-chaperone protein HscB	yes	N/A	0.677	0.712	0.344	8e-16
Q1CKA6	174	Co-chaperone protein HscB	yes	N/A	0.677	0.712	0.344	8e-16
A9R815	174	Co-chaperone protein HscB	yes	N/A	0.677	0.712	0.344	8e-16
Q8ZCS4	174	Co-chaperone protein HscB	yes	N/A	0.677	0.712	0.344	8e-16
Q1C5H3	174	Co-chaperone protein HscB	yes	N/A	0.677	0.712	0.344	8e-16

>sp|Q8K3A0|HSC20_MOUSE Iron-sulfur cluster co-chaperone protein HscB, mitochondrial OS=Mus musculus GN=Hscb PE=2 SV=2

 Score =  136 bits (343), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 8   ILGSETALCTETAKSLELKCWNC---LKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKM 64
           +LGS  A      KS+  +CWNC    ++  G   FC HC ++Q PDP  +Y+++ +   
Sbjct: 25  LLGSNAA----AGKSIAPQCWNCGHAREAGCGDEFFCSHCRALQPPDPTRDYFSLMNCNR 80

Query: 65  QYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYL 124
            + ++   L  +++ LQ  +HPD FS K+Q E+  S+ +S+ +N AY  LQ PL RGLYL
Sbjct: 81  SFRVDVTKLQHRYQQLQRLVHPDFFSQKSQTEKHFSDKHSTLVNDAYKTLQAPLTRGLYL 140

Query: 125 LSLQNISIEEDSK-GTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
           L LQ I I E +    D + L+EI+ +NE L +A SE  +E ++ ++RA  +E T  +N+
Sbjct: 141 LKLQGIEIPEGTDYKADSQFLVEIMEINERLADAQSEAAMEEIEATVRAKQKEFTDNINS 200

Acts as a co-chaperone in iron-sulfur cluster assembly in mitochondria.
Mus musculus (taxid: 10090)

>sp|Q8IWL3|HSC20_HUMAN Iron-sulfur cluster co-chaperone protein HscB, mitochondrial OS=Homo sapiens GN=HSCB PE=1 SV=3

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 97/162 (59%), Gaps = 4/162 (2%)

Query: 26  KCWNCLKSLS-GK--SLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQS 82
           +CWNC      G+    FC  C ++Q PDP  +Y+++ D    + ++ A L  +++ LQ 
Sbjct: 40  RCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQR 99

Query: 83  QLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEEDSK-GTDQ 141
            +HPD FS ++Q E+  SE +S+ +N AY  L  PL RGLYLL L  I I E +    D+
Sbjct: 100 LVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDR 159

Query: 142 KLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
           + L+EI+ +NE+L EA SE  ++ +++ ++A  +E T  V++
Sbjct: 160 QFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSS 201

Acts as a co-chaperone in iron-sulfur cluster assembly in mitochondria.

Homo sapiens (taxid: 9606)

>sp|B4EZU5|HSCB_PROMH Co-chaperone protein HscB OS=Proteus mirabilis (strain HI4320) GN=hscB PE=3 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 1/124 (0%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +  M  ++ I+   L+ +++ +Q Q HPD+F+ K+ +EQ  + +++S +N+AY  L
Sbjct: 2   DYFTLLGMPNRFDIDKQQLASRYQEMQRQYHPDRFAGKSDKEQVQAISFASTINQAYQTL 61

Query: 115 QNPLKRGLYLLSLQNISIE-EDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRAT 173
           +NPL R  Y+LSLQ I I  E     D   LME L L EELD+     D ENL     A 
Sbjct: 62  KNPLSRAEYMLSLQGIDIANEQQTMHDTAFLMEQLTLREELDDIEHSTDAENLLADFSAR 121

Query: 174 IEEL 177
           +E++
Sbjct: 122 LEKM 125

Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA.

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|A1JKQ5|HSCB_YERE8 Co-chaperone protein HscB OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=hscB PE=3 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 1/111 (0%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  QYLI+ + L+ +++ LQ Q HPD+F+N+ + E+  S   ++ +N AY  L
Sbjct: 2   DYFTLFGLPPQYLIDGSRLTTRYQELQRQFHPDRFANQPERERLASLQQAATINDAYQTL 61

Query: 115 QNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILMLNEELDEASSEEDLE 164
           ++PLKR  Y+LSLQ   +  E     D   LME L L EELD      D E
Sbjct: 62  KHPLKRAEYMLSLQGFDLGNEQHTLRDTAFLMEQLELREELDAIERSPDAE 112

Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA.

Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

>sp|B1JRZ1|HSCB_YERPY Co-chaperone protein HscB OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=hscB PE=3 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  +YLI+   L+ +++ LQ Q HPD+F+ + + E+  S   ++ +N AY  L
Sbjct: 2   DYFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTL 61

Query: 115 QNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRAT 173
           ++PLKR  Y+LSLQ   +  E     D   LME L L EELD    + D E L       
Sbjct: 62  KHPLKRAEYMLSLQGFDLGNEQHTMRDTAFLMEQLELREELDAIERKPDAETLLAEFSRR 121

Query: 174 IEELT 178
           + ++T
Sbjct: 122 VAQMT 126

Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA.

Yersinia pseudotuberculosis serotype O:3 (strain YPIII) (taxid: 502800)

>sp|A4TMV1|HSCB_YERPP Co-chaperone protein HscB OS=Yersinia pestis (strain Pestoides F) GN=hscB PE=3 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  +YLI+   L+ +++ LQ Q HPD+F+ + + E+  S   ++ +N AY  L
Sbjct: 2   DYFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTL 61

Query: 115 QNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRAT 173
           ++PLKR  Y+LSLQ   +  E     D   LME L L EELD    + D E L       
Sbjct: 62  KHPLKRAEYMLSLQGFDLGNEQHTMRDTAFLMEQLELREELDAIERKPDAETLLAEFSRR 121

Query: 174 IEELT 178
           + ++T
Sbjct: 122 VAQMT 126

Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA.

Yersinia pestis (strain Pestoides F) (taxid: 386656)

>sp|Q1CKA6|HSCB_YERPN Co-chaperone protein HscB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=hscB PE=3 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  +YLI+   L+ +++ LQ Q HPD+F+ + + E+  S   ++ +N AY  L
Sbjct: 2   DYFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTL 61

Query: 115 QNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRAT 173
           ++PLKR  Y+LSLQ   +  E     D   LME L L EELD    + D E L       
Sbjct: 62  KHPLKRAEYMLSLQGFDLGNEQHTMRDTAFLMEQLELREELDAIERKPDAETLLAEFSRR 121

Query: 174 IEELT 178
           + ++T
Sbjct: 122 VAQMT 126

Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA.

Yersinia pestis bv. Antiqua (strain Nepal516) (taxid: 377628)

>sp|A9R815|HSCB_YERPG Co-chaperone protein HscB OS=Yersinia pestis bv. Antiqua (strain Angola) GN=hscB PE=3 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  +YLI+   L+ +++ LQ Q HPD+F+ + + E+  S   ++ +N AY  L
Sbjct: 2   DYFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTL 61

Query: 115 QNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRAT 173
           ++PLKR  Y+LSLQ   +  E     D   LME L L EELD    + D E L       
Sbjct: 62  KHPLKRAEYMLSLQGFDLGNEQHTMRDTAFLMEQLELREELDAIERKPDAETLLAEFSRR 121

Query: 174 IEELT 178
           + ++T
Sbjct: 122 VAQMT 126

Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA.

Yersinia pestis bv. Antiqua (strain Angola) (taxid: 349746)

>sp|Q8ZCS4|HSCB_YERPE Co-chaperone protein HscB OS=Yersinia pestis GN=hscB PE=3 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  +YLI+   L+ +++ LQ Q HPD+F+ + + E+  S   ++ +N AY  L
Sbjct: 2   DYFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTL 61

Query: 115 QNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRAT 173
           ++PLKR  Y+LSLQ   +  E     D   LME L L EELD    + D E L       
Sbjct: 62  KHPLKRAEYMLSLQGFDLGNEQHTMRDTAFLMEQLELREELDAIERKPDAETLLAEFSRR 121

Query: 174 IEELT 178
           + ++T
Sbjct: 122 VAQMT 126

Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA.

Yersinia pestis (taxid: 632)

>sp|Q1C5H3|HSCB_YERPA Co-chaperone protein HscB OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=hscB PE=3 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  +YLI+   L+ +++ LQ Q HPD+F+ + + E+  S   ++ +N AY  L
Sbjct: 2   DYFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTL 61

Query: 115 QNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRAT 173
           ++PLKR  Y+LSLQ   +  E     D   LME L L EELD    + D E L       
Sbjct: 62  KHPLKRAEYMLSLQGFDLGNEQHTMRDTAFLMEQLELREELDAIERKPDAETLLAEFSRR 121

Query: 174 IEELT 178
           + ++T
Sbjct: 122 VAQMT 126

Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA.

Yersinia pestis bv. Antiqua (strain Antiqua) (taxid: 360102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
354479114	234	PREDICTED: iron-sulfur cluster co-chaper	0.901	0.705	0.402	6e-32
48474478	234	RecName: Full=Iron-sulfur cluster co-cha	0.939	0.735	0.372	3e-30
225703114	234	iron-sulfur cluster co-chaperone protein	0.939	0.735	0.372	4e-30
355695137	234	HscB iron-sulfur cluster co-chaperone-li	0.978	0.764	0.356	1e-29
281350158	235	hypothetical protein PANDA_003661 [Ailur	0.978	0.761	0.362	2e-29
301759605	236	PREDICTED: iron-sulfur cluster co-chaper	0.978	0.758	0.362	2e-29
198433236	266	PREDICTED: similar to HscB iron-sulfur c	0.841	0.578	0.438	5e-29
157820565	234	iron-sulfur cluster co-chaperone protein	0.901	0.705	0.384	6e-29
225708010	278	Co-chaperone protein HscB, mitochondrial	0.950	0.625	0.374	7e-29
73995390	235	PREDICTED: iron-sulfur cluster co-chaper	0.961	0.748	0.367	8e-29

>gi|354479114|ref|XP_003501758.1| PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial-like [Cricetulus griseus] gi|344246324|gb|EGW02428.1| Co-chaperone protein HscB, mitochondrial [Cricetulus griseus]

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 104/169 (61%), Gaps = 4/169 (2%)

Query: 19  TAKSLELKCWNCLKSL---SGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSK 75
           + KS   +CWNC  +    SG   FC+HC ++Q PDP  +Y+++ +    + ++   L  
Sbjct: 32  SGKSNAGQCWNCGSAGGVESGDGFFCEHCRALQPPDPTRDYFSLMNCHRSFRVDVMKLQH 91

Query: 76  KFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEED 135
           +++ LQ  +HPD FS K+Q E+  SE +S+ +N AY  LQ PL RGLYLL LQ I I E 
Sbjct: 92  RYQQLQRLVHPDFFSQKSQTEKHFSEKHSTLVNDAYKTLQAPLSRGLYLLKLQGIEIPEG 151

Query: 136 SK-GTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
           +  G D + LMEI+ +NE+L +A SE  +E +++++RA  +E T  VN 
Sbjct: 152 TDYGRDSQFLMEIMEINEKLADAQSEAAMEEIESTVRAKQKEFTDGVNR 200

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|48474478|sp|Q8K3A0.2|HSC20_MOUSE RecName: Full=Iron-sulfur cluster co-chaperone protein HscB, mitochondrial; AltName: Full=Hsc20; Flags: Precursor gi|148688053|gb|EDL20000.1| expressed sequence AW049829, isoform CRA_b [Mus musculus]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 8   ILGSETALCTETAKSLELKCWNC---LKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKM 64
           +LGS  A      KS+  +CWNC    ++  G   FC HC ++Q PDP  +Y+++ +   
Sbjct: 25  LLGSNAA----AGKSIAPQCWNCGHAREAGCGDEFFCSHCRALQPPDPTRDYFSLMNCNR 80

Query: 65  QYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYL 124
            + ++   L  +++ LQ  +HPD FS K+Q E+  S+ +S+ +N AY  LQ PL RGLYL
Sbjct: 81  SFRVDVTKLQHRYQQLQRLVHPDFFSQKSQTEKHFSDKHSTLVNDAYKTLQAPLTRGLYL 140

Query: 125 LSLQNISIEEDSK-GTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
           L LQ I I E +    D + L+EI+ +NE L +A SE  +E ++ ++RA  +E T  +N+
Sbjct: 141 LKLQGIEIPEGTDYKADSQFLVEIMEINERLADAQSEAAMEEIEATVRAKQKEFTDNINS 200

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|225703114|ref|NP_705799.2| iron-sulfur cluster co-chaperone protein HscB, mitochondrial precursor [Mus musculus] gi|74203501|dbj|BAE20904.1| unnamed protein product [Mus musculus]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 105/180 (58%), Gaps = 8/180 (4%)

Query: 8   ILGSETALCTETAKSLELKCWNCLKSLS---GKSLFCQHCSSVQKPDPQNNYYNVFDMKM 64
           +LGS  A      KS+  +CWNC  +     G   FC HC ++Q PDP  +Y+++ +   
Sbjct: 25  LLGSNAA----AGKSIAPQCWNCGHAREVGCGDEFFCSHCRALQPPDPTRDYFSLMNCNR 80

Query: 65  QYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYL 124
            + ++   L  +++ LQ  +HPD FS K+Q E+  S+ +S+ +N AY  LQ PL RGLYL
Sbjct: 81  SFRVDVTKLQHRYQQLQRLVHPDFFSQKSQTEKHFSDKHSTLVNDAYKTLQAPLTRGLYL 140

Query: 125 LSLQNISIEEDSK-GTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
           L LQ I I E +    D + L+EI+ +NE L +A SE  +E ++ ++RA  +E T  +N+
Sbjct: 141 LKLQGIEIPEGTDYKADSQFLVEIMEINERLADAQSEAAMEEIEATVRAKQKEFTDNINS 200

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355695137|gb|AER99908.1| HscB iron-sulfur cluster co-chaperone-like protein [Mustela putorius furo]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 106/185 (57%), Gaps = 6/185 (3%)

Query: 5   PSAILGSETALCTET--AKSLELKCWNCLKS---LSGKSLFCQHCSSVQKPDPQNNYYNV 59
           P+ +LG     C+    A +   +CWNC      + G   FC  C ++Q PDP  +Y+++
Sbjct: 17  PAGVLGRRPLSCSAASLAGNSSPQCWNCGGPGSHMRGDGFFCPQCRALQPPDPTRDYFSL 76

Query: 60  FDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLK 119
            D    + ++ A L  +++ LQ  +HPD FS ++Q E+  SE +S+ +N AY  L  PL 
Sbjct: 77  LDCNRAFRVDTAKLQTRYQELQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLS 136

Query: 120 RGLYLLSLQNISIEEDSK-GTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELT 178
           RGLYLL L  + I E +    D++ LMEI+ +NE+L EA SE  ++ +++ +RA  +ELT
Sbjct: 137 RGLYLLKLHGVEIPEGTDYEMDRQFLMEIMEINEKLAEAQSEAAMKEIESIVRAKQKELT 196

Query: 179 KKVNN 183
             V+ 
Sbjct: 197 DNVSR 201

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281350158|gb|EFB25742.1| hypothetical protein PANDA_003661 [Ailuropoda melanoleuca]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 104/185 (56%), Gaps = 6/185 (3%)

Query: 5   PSAILGSETALCTET--AKSLELKCWNCLKS---LSGKSLFCQHCSSVQKPDPQNNYYNV 59
           P+ +LG     C     A S   +CWNC      + G   FC  C ++Q PDP  +Y+++
Sbjct: 17  PAGVLGRRPLSCNAASLAGSNSPQCWNCGGPGGPMRGDGFFCPQCRALQPPDPTRDYFSL 76

Query: 60  FDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLK 119
            D    + ++ A L  +++ LQ  +HPD FS ++Q E+  SE +S+ +N AY  L  PL 
Sbjct: 77  MDCNRAFRVDTAKLQTRYQDLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLS 136

Query: 120 RGLYLLSLQNISIEEDSK-GTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELT 178
           RGLYLL L  + I E +    D++ LMEI+ +NE+L EA SE  ++ +++ +RA   ELT
Sbjct: 137 RGLYLLKLHGVEIPEGTDYEMDRQFLMEIMEINEKLAEAQSEAAVKEIESVVRAKQNELT 196

Query: 179 KKVNN 183
             V+ 
Sbjct: 197 DNVSR 201

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301759605|ref|XP_002915636.1| PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial-like [Ailuropoda melanoleuca]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 104/185 (56%), Gaps = 6/185 (3%)

Query: 5   PSAILGSETALCTET--AKSLELKCWNCLKS---LSGKSLFCQHCSSVQKPDPQNNYYNV 59
           P+ +LG     C     A S   +CWNC      + G   FC  C ++Q PDP  +Y+++
Sbjct: 17  PAGVLGRRPLSCNAASLAGSNSPQCWNCGGPGGPMRGDGFFCPQCRALQPPDPTRDYFSL 76

Query: 60  FDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLK 119
            D    + ++ A L  +++ LQ  +HPD FS ++Q E+  SE +S+ +N AY  L  PL 
Sbjct: 77  MDCNRAFRVDTAKLQTRYQDLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLS 136

Query: 120 RGLYLLSLQNISIEEDSK-GTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELT 178
           RGLYLL L  + I E +    D++ LMEI+ +NE+L EA SE  ++ +++ +RA   ELT
Sbjct: 137 RGLYLLKLHGVEIPEGTDYEMDRQFLMEIMEINEKLAEAQSEAAVKEIESVVRAKQNELT 196

Query: 179 KKVNN 183
             V+ 
Sbjct: 197 DNVSR 201

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|198433236|ref|XP_002123428.1| PREDICTED: similar to HscB iron-sulfur cluster co-chaperone homolog [Ciona intestinalis]

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%)

Query: 27  CWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHP 86
           CW C K +    LFC  C +V      ++Y+ +F++++ + I++  L  KFK LQ  LHP
Sbjct: 77  CWKCSKKVKTSELFCGSCGTVLPVKNSDSYFTLFNLQVDFNISSPLLQNKFKKLQKLLHP 136

Query: 87  DKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEEDSKGTDQKLLME 146
           DKFS K+  EQ ISE+ SS LNKAY  L  PL RGLY+L LQ I + E+    D + LME
Sbjct: 137 DKFSLKSSAEQEISESVSSKLNKAYFCLAKPLSRGLYMLKLQGIHLGENVSADDPEFLME 196

Query: 147 ILMLNEELDEASSEEDLENLQTSIRATIEELTKKV 181
           I+ LNE++  AS+EE  + +Q+++++ +EELT K+
Sbjct: 197 IMELNEQI-AASNEETHKEIQSTVKSHLEELTTKI 230

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157820565|ref|NP_001101810.1| iron-sulfur cluster co-chaperone protein HscB, mitochondrial precursor [Rattus norvegicus] gi|149063704|gb|EDM14027.1| similar to J-type co-chaperone HSC20 (predicted), isoform CRA_a [Rattus norvegicus]

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 4/169 (2%)

Query: 19  TAKSLELKCWNCLKSLS---GKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSK 75
           + KS+E +CWNC +++    G   FC HC ++Q PDP  +Y+++ +    + ++   L +
Sbjct: 32  SGKSIEPQCWNCGRAMGAGRGDEFFCAHCRALQPPDPTRDYFSLMNCNQSFRVDIRKLQQ 91

Query: 76  KFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEED 135
           +++ LQ  +HPD FS K+Q E+  SE +S+ +N AY  LQ P+ RGLYLL LQ I I E 
Sbjct: 92  RYQQLQRLVHPDFFSQKSQTEKRFSEKHSTLVNDAYKTLQAPVSRGLYLLKLQGIEIPEG 151

Query: 136 SK-GTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
           +   TD + L+EI+ +NE+L +A SE  +E ++ ++RA  +E T  +N 
Sbjct: 152 TDYRTDSQFLVEIMEINEKLADAKSEAAMEEVEATVRAKQKEFTDNINR 200

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|225708010|gb|ACO09851.1| Co-chaperone protein HscB, mitochondrial precursor [Osmerus mordax]

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 106/179 (59%), Gaps = 5/179 (2%)

Query: 6   SAILGSETALCTETAKSLELKCWNCLKSLS-GKSLFCQHCSSVQKPDPQNNYYNVFDMKM 64
           + I+ S+   CT   K     CWNC + +    + FC  C+ +Q PD   +++ + D   
Sbjct: 67  TTIVSSQKLFCTTHVKQ---NCWNCSQPIEETPAFFCLSCNVLQPPDESASFFQIMDCDQ 123

Query: 65  QYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYL 124
            + I+   L K++ HLQ  LHPD FS K ++EQ  SE  S+ +NKAY  L  PL RGLY+
Sbjct: 124 TFAISTEKLQKRYLHLQRSLHPDNFSQKKEKEQEFSEHQSALVNKAYRTLLKPLSRGLYM 183

Query: 125 LSLQNISIEEDS-KGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVN 182
           L LQ++ +EE +  G D +LL+E++ +NE L EA S ED+  +  S +  ++ELT++++
Sbjct: 184 LELQSMHLEEGTDPGADPQLLLELMEMNEALQEARSPEDVHPIGQSTKERLKELTEQID 242

Source: Osmerus mordax

Species: Osmerus mordax

Genus: Osmerus

Family: Osmeridae

Order: Osmeriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|73995390|ref|XP_534725.2| PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Canis lupus familiaris]

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 104/188 (55%), Gaps = 12/188 (6%)

Query: 5   PSAILGSETALCTET--AKSLELKCWNCLKS---LSGKSLFCQHCSSVQKPDPQNNYYNV 59
           P+  LG     C     A S   +CWNC        G   FC  C ++Q PDP  +Y+++
Sbjct: 17  PAGALGRRPLSCDAASLAGSGSSQCWNCGGPGGPTRGDGFFCPQCRALQPPDPTRDYFSL 76

Query: 60  FDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLK 119
            D    + ++ A L  +++ LQ  +HPD FS ++Q E+  SE +S+ +N AY  L  PL 
Sbjct: 77  MDCNRAFRVDTAKLQTRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLS 136

Query: 120 RGLYLLSLQNISIEEDSKGTDQKL----LMEILMLNEELDEASSEEDLENLQTSIRATIE 175
           RGLYLL L  + I E   GTD K+    LMEI+ +NE+L EA SE  ++ +++ +RA  +
Sbjct: 137 RGLYLLKLHGVEIPE---GTDYKMDRQFLMEIMEINEKLAEAQSEAAMKEIESIVRAKQK 193

Query: 176 ELTKKVNN 183
           E+T  V+ 
Sbjct: 194 EMTDYVSR 201

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
RGD|1311005	234	Hscb "HscB iron-sulfur cluster	0.896	0.700	0.327	2e-24
MGI|MGI:2141135	234	Hscb "HscB iron-sulfur cluster	0.923	0.722	0.333	2.9e-23
UNIPROTKB|F1MLK9	235	HSCB "Uncharacterized protein"	0.726	0.565	0.368	3.9e-21
UNIPROTKB|F6UZ83	235	HSCB "Uncharacterized protein"	0.737	0.574	0.370	3.9e-21
ZFIN|ZDB-GENE-070705-97	267	si:ch211-207k7.4 "si:ch211-207	0.846	0.580	0.303	1.3e-20
UNIPROTKB|E2QU61	225	HSCB "Uncharacterized protein"	0.699	0.568	0.364	1.2e-19
FB|FBgn0263606	240	l(3)72Do "lethal (3) 72Do" [Dr	0.852	0.65	0.286	1.9e-19
UNIPROTKB|Q8IWL3	235	HSCB "Iron-sulfur cluster co-c	0.595	0.463	0.392	3.1e-19
UNIPROTKB|B0QYH2	143	HSCB "J-type co-chaperone HSC2	0.551	0.706	0.384	1.2e-17
WB|WBGene00001033	211	dnj-15 [Caenorhabditis elegans	0.590	0.511	0.366	5.3e-17

RGD|1311005 Hscb "HscB iron-sulfur cluster co-chaperone homolog (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 55/168 (32%), Positives = 89/168 (52%)

Query:    19 TAKSLELKCWNCLKSLS---GKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSK 75
             + KS+E +CWNC +++    G   FC HC ++Q PDP  +Y+++ +    + ++   L +
Sbjct:    32 SGKSIEPQCWNCGRAMGAGRGDEFFCAHCRALQPPDPTRDYFSLMNCNQSFRVDIRKLQQ 91

Query:    76 KFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEED 135
             +++ LQ  +HPD FS K+Q E+  SE +S+ +N AY  LQ P+ RGLYLL LQ I I E 
Sbjct:    92 RYQQLQRLVHPDFFSQKSQTEKRFSEKHSTLVNDAYKTLQAPVSRGLYLLKLQGIEIPEG 151

Query:   136 SK-GTDQKXXXXXXXXXXXXXXXXXXXXXXXXQTSIRATIEELTKKVN 182
             +   TD +                        + ++RA  +E T  +N
Sbjct:   152 TDYRTDSQFLVEIMEINEKLADAKSEAAMEEVEATVRAKQKEFTDNIN 199

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006457 "protein folding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;ISO

GO:0051087 "chaperone binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

MGI|MGI:2141135 Hscb "HscB iron-sulfur cluster co-chaperone homolog (E. coli)" [Mus musculus (taxid:10090)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 61/183 (33%), Positives = 90/183 (49%)

Query:     8 ILGSETALCTETAKSLELKCWNC---LKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKM 64
             +LGS  A      KS+  +CWNC    ++  G   FC HC ++Q PDP  +Y+++ +   
Sbjct:    25 LLGSNAA----AGKSIAPQCWNCGHAREAGCGDEFFCSHCRALQPPDPTRDYFSLMNCNR 80

Query:    65 QYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYL 124
              + ++   L  +++ LQ  +HPD FS K+Q E+  S+ +S+ +N AY  LQ PL RGLYL
Sbjct:    81 SFRVDVTKLQHRYQQLQRLVHPDFFSQKSQTEKHFSDKHSTLVNDAYKTLQAPLTRGLYL 140

Query:   125 LSLQNISIEEDSKGTDQKXXXXXXXXXXXXXXXXXXXXXXXXQTSIRATI----EELTKK 180
             L LQ I I E   GTD K                           I AT+    +E T  
Sbjct:   141 LKLQGIEIPE---GTDYKADSQFLVEIMEINERLADAQSEAAMEEIEATVRAKQKEFTDN 197

Query:   181 VNN 183
             +N+
Sbjct:   198 INS 200

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

UNIPROTKB|F1MLK9 HSCB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 52/141 (36%), Positives = 76/141 (53%)

Query:     5 PSAILGSETALCTET--AKSLELKCWNCLKSLS---GKSLFCQHCSSVQKPDPQNNYYNV 59
             P+ +LG     C     A S   +CWNC        G   FC  C ++Q PDP  +Y+++
Sbjct:    17 PTGVLGRRLLNCNAASLAGSSSPRCWNCGGPGGPPRGDRFFCPQCRALQPPDPTRDYFSL 76

Query:    60 FDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLK 119
              D    + ++   L  +++ LQ  +HPD FS ++Q E+  SE +S+ +N+AY  L  PL 
Sbjct:    77 MDCNRSFRVDTVKLQHRYQQLQRLVHPDFFSQRSQNEKDFSEKHSTLVNEAYKTLLAPLS 136

Query:   120 RGLYLLSLQNISIEEDSKGTD 140
             RGLYLL L+ I I E   GTD
Sbjct:   137 RGLYLLKLRGIEIPE---GTD 154

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F6UZ83 HSCB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 53/143 (37%), Positives = 75/143 (52%)

Query:     5 PSAILGSETALC--TETAKSLELKCWNCLKS---LSGKSLFCQHCSSVQKPDPQNNYYNV 59
             P+  LG     C     A S   +CWNC        G   FC  C ++Q PDP  +Y+++
Sbjct:    17 PAGALGRRPLSCDAASLAGSGSSQCWNCGGPGGPTRGDGFFCPQCRALQPPDPTRDYFSL 76

Query:    60 FDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLK 119
              D    + ++ A L  +++ LQ  +HPD FS ++Q E+  SE +S+ +N AY  L  PL 
Sbjct:    77 MDCNRAFRVDTAKLQTRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLS 136

Query:   120 RGLYLLSLQNISIEEDSKGTDQK 142
             RGLYLL L  + I E   GTD K
Sbjct:   137 RGLYLLKLHGVEIPE---GTDYK 156

GO:0051259 "protein oligomerization" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-070705-97 si:ch211-207k7.4 "si:ch211-207k7.4" [Danio rerio (taxid:7955)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 48/158 (30%), Positives = 80/158 (50%)

Query:    27 CWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHP 86
             CWNC    S    FC  C  +Q PD + +Y+++   +  + ++   L +K+  LQ  LHP
Sbjct:    77 CWNC--GASADLFFCAFCKVIQPPDNKTSYFDILKCEENFSLDTQKLQQKYVKLQRVLHP 134

Query:    87 DKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEEDSKGT-DQKXXX 145
             D F+ K+Q+EQ  SE  S+ +NKAY  LQ PL R +Y+L L+ + +EE +  T D     
Sbjct:   135 DNFTQKSQKEQEYSEEQSALVNKAYRTLQKPLSRAVYMLELRGVLLEEGTDATADPALLL 194

Query:   146 XXXXXXXXXXXXXXXXXXXXXQTSIRATIEELTKKVNN 183
                                    S++  +++LT+++N+
Sbjct:   195 EVMEINESLAETRSQDEVSAIGRSVQEKLKDLTERMNS 232

GO:0051087 "chaperone binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|E2QU61 HSCB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 51/140 (36%), Positives = 73/140 (52%)

Query:     5 PSAILGSETALC--TETAKSLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDM 62
             P+  LG     C     A S   +CWN          FC  C ++Q PDP  +Y+++ D 
Sbjct:    17 PAGALGRRPLSCDAASLAGSGSSQCWN-------DGFFCPQCRALQPPDPTRDYFSLMDC 69

Query:    63 KMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGL 122
                + ++ A L  +++ LQ  +HPD FS ++Q E+  SE +S+ +N AY  L  PL RGL
Sbjct:    70 NRAFRVDTAKLQTRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGL 129

Query:   123 YLLSLQNISIEEDSKGTDQK 142
             YLL L  + I E   GTD K
Sbjct:   130 YLLKLHGVEIPE---GTDYK 146

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

FB|FBgn0263606 l(3)72Do "lethal (3) 72Do" [Drosophila melanogaster (taxid:7227)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 45/157 (28%), Positives = 76/157 (48%)

Query:    27 CWNCLKSLSGK-SLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLH 85
             CWNC K    K ++ C  C  +Q  +   NY+ +    +Q+ + +  L++ F+ LQ+ +H
Sbjct:    46 CWNCQKKSELKQNMICSDCGHLQDVNSGINYFKLLSFPIQFSLESQKLTRSFRQLQTIVH 105

Query:    86 PDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEEDSKGTDQKXXX 145
             PDK+SNK   EQ  S  +SS +NKAY  L  P+ RG YLL L+   + +D+   +++   
Sbjct:   106 PDKYSNKTSREQTNSSDWSSLINKAYKTLSTPIDRGQYLLQLEGEQMPQDNSALNKEFLM 165

Query:   146 XXXXXXXXXXXXXXXXXXXXXQTSIRATIEELTKKVN 182
                                     +   +EE+ +K+N
Sbjct:   166 AMMERNEEVEDAEDTQTLENLNIQLIKELEEMARKLN 202

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0051259 "protein oligomerization" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q8IWL3 HSCB "Iron-sulfur cluster co-chaperone protein HscB, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 44/112 (39%), Positives = 65/112 (58%)

Query:    26 KCWNCLKSLS-GKS--LFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQS 82
             +CWNC      G+    FC  C ++Q PDP  +Y+++ D    + ++ A L  +++ LQ 
Sbjct:    40 RCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQR 99

Query:    83 QLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEE 134
              +HPD FS ++Q E+  SE +S+ +N AY  L  PL RGLYLL L  I I E
Sbjct:   100 LVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPE 151

GO:0006457 "protein folding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|B0QYH2 HSCB "J-type co-chaperone HSC20, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 40/104 (38%), Positives = 62/104 (59%)

Query:    26 KCWNCLKSLS-GKS--LFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQS 82
             +CWNC      G+    FC  C ++Q PDP  +Y+++ D    + ++ A L  +++ LQ 
Sbjct:    40 RCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQR 99

Query:    83 QLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS 126
              +HPD FS ++Q E+  SE +S+ +N AY  L  PL RGLYL+S
Sbjct:   100 LVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLVS 143

GO:0006457 "protein folding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

WB|WBGene00001033 dnj-15 [Caenorhabditis elegans (taxid:6239)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 40/109 (36%), Positives = 60/109 (55%)

Query:    17 TETAKSLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKK 76
             T     L   CWNC K +    + C+ C+ +Q      +Y+N   +K  + ++  +L +K
Sbjct:    14 THDHTKLHPSCWNCKKDVQDP-IICKKCNVIQPVTSGQDYFNYMGVKFDFRLDQDELKQK 72

Query:    77 FKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125
             F  LQS+LHPDKF     EE+ +SE +S  LN+AY  L +P KR  YL+
Sbjct:    73 FHQLQSKLHPDKFVMATDEEKKLSEEHSRKLNEAYKELADPFKRAKYLI 121

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2K9R4	HSCB_YERPB	No assigned EC number	0.344	0.6775	0.7126	yes	N/A
B7UGX3	HSCB_ECO27	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
Q8K3A0	HSC20_MOUSE	No assigned EC number	0.3722	0.9398	0.7350	yes	N/A
B2TXV2	HSCB_SHIB3	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
Q1C5H3	HSCB_YERPA	No assigned EC number	0.344	0.6775	0.7126	yes	N/A
A1JKQ5	HSCB_YERE8	No assigned EC number	0.3873	0.6010	0.6321	yes	N/A
A9R815	HSCB_YERPG	No assigned EC number	0.344	0.6775	0.7126	yes	N/A
A1AE64	HSCB_ECOK1	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B7N6B4	HSCB_ECOLU	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
A4TMV1	HSCB_YERPP	No assigned EC number	0.344	0.6775	0.7126	yes	N/A
Q31XW3	HSCB_SHIBS	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B1IWD4	HSCB_ECOLC	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
C4ZXA2	HSCB_ECOBW	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B7LDB9	HSCB_ECO55	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
A8AD55	HSCB_CITK8	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
A7ZPX0	HSCB_ECO24	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B7MIL7	HSCB_ECO45	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
Q3YZ25	HSCB_SHISS	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
A7FFX4	HSCB_YERP3	No assigned EC number	0.344	0.6775	0.7126	yes	N/A
B7LKB2	HSCB_ESCF3	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B4TDB3	HSCB_SALHS	No assigned EC number	0.3430	0.7049	0.7543	yes	N/A
Q8ZCS4	HSCB_YERPE	No assigned EC number	0.344	0.6775	0.7126	yes	N/A
Q32D37	HSCB_SHIDS	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
P0A6M0	HSCB_ECOL6	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
A8GHY0	HSCB_SERP5	No assigned EC number	0.3149	0.6885	0.7283	yes	N/A
Q8IWL3	HSC20_HUMAN	No assigned EC number	0.3641	0.8633	0.6723	yes	N/A
B4EZU5	HSCB_PROMH	No assigned EC number	0.3709	0.6721	0.7109	yes	N/A
Q0T1Z2	HSCB_SHIF8	No assigned EC number	0.3644	0.6393	0.6842	yes	N/A
Q83QK3	HSCB_SHIFL	No assigned EC number	0.3644	0.6393	0.6842	yes	N/A
Q667Y4	HSCB_YERPS	No assigned EC number	0.344	0.6775	0.7126	yes	N/A
Q1CKA6	HSCB_YERPN	No assigned EC number	0.344	0.6775	0.7126	yes	N/A
Q6D262	HSCB_ERWCT	No assigned EC number	0.3247	0.6338	0.6744	yes	N/A
A4WDA8	HSCB_ENT38	No assigned EC number	0.3813	0.6393	0.6842	yes	N/A
B7MYG1	HSCB_ECO81	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
Q0TEV8	HSCB_ECOL5	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B1JRZ1	HSCB_YERPY	No assigned EC number	0.344	0.6775	0.7126	yes	N/A
B7NRH6	HSCB_ECO7I	No assigned EC number	0.3728	0.6393	0.6647	yes	N/A
Q1R8K5	HSCB_ECOUT	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B7M7N0	HSCB_ECO8A	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B5XNK0	HSCB_KLEP3	No assigned EC number	0.3474	0.6393	0.6842	yes	N/A
B1LNI2	HSCB_ECOSM	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B1XB02	HSCB_ECODH	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
A8A333	HSCB_ECOHS	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B6I599	HSCB_ECOSE	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A
B5Z100	HSCB_ECO5E	No assigned EC number	0.3728	0.6393	0.6842	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	183
PRK05014	171	PRK05014, hscB, co-chaperone HscB; Provisional	5e-22
PRK03578	176	PRK03578, hscB, co-chaperone HscB; Provisional	2e-16
PRK00294	173	PRK00294, hscB, co-chaperone HscB; Provisional	1e-15
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	6e-13
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	2e-12
PRK01773	173	PRK01773, hscB, co-chaperone HscB; Provisional	4e-11
PRK01356	166	PRK01356, hscB, co-chaperone HscB; Provisional	5e-08
pfam00226	63	pfam00226, DnaJ, DnaJ domain	1e-06
pfam07743	78	pfam07743, HSCB_C, HSCB C-terminal oligomerisation	6e-05
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-04
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-04
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	4e-04
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	7e-04
PRK06330	718	PRK06330, PRK06330, transcript cleavage factor/unk	8e-04
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	0.001
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	0.001
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	0.002
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	0.004

>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional

 Score = 86.9 bits (216), Expect = 5e-22
 Identities = 39/131 (29%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  +Y I+   L+ +++ LQ Q HPDKF+N ++ E+ ++   ++ +N AY  L
Sbjct: 2   DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTL 61

Query: 115 QNPLKRGLYLLSLQNISIEEDSKGT-DQKLLMEILMLNEELDEASSEED----LENLQTS 169
           ++PLKR  YLLSL    +  +     D   LME + L EEL++    +D    LE+    
Sbjct: 62  KHPLKRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELREELEDIEQSKDPEAALESFIKR 121

Query: 170 IRATIEELTKK 180
           ++   +   ++
Sbjct: 122 VKKMFKTRLQQ 132

Length = 171

>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 29/117 (24%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 51  DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKA 110
             +++++++F +  ++ ++ A L   ++ +Q+Q+HPD+F+     E+ ++  +++  N+A
Sbjct: 3   SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEA 62

Query: 111 YSILQNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILMLNEELDEASSEEDLENL 166
           Y  L++PLKR  YLL L+ + +  E++       LM+ +   E +++A +  D++ L
Sbjct: 63  YQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDARAARDVDAL 119

Length = 176

>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional

 Score = 70.3 bits (172), Expect = 1e-15
 Identities = 32/108 (29%), Positives = 65/108 (60%)

Query: 56  YYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQ 115
           ++ +FD++  + ++   L+ +++ L  ++HPD+F++  + EQ ++   S+ LN+AY  L+
Sbjct: 6   HFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLK 65

Query: 116 NPLKRGLYLLSLQNISIEEDSKGTDQKLLMEILMLNEELDEASSEEDL 163
           +P +R  YLL+L    +  +    D + L++ + L EEL+E   E DL
Sbjct: 66  SPPRRARYLLALSGHEVPLEVTVHDPEFLLQQMQLREELEELQDEADL 113

Length = 173

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 63.0 bits (153), Expect = 6e-13
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 66  YLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125
           + ++ + L K+++ LQ+Q HPD  ++   +EQ  +   S+ LN+AY  L++PL+R  Y+L
Sbjct: 1   WQLDQSRLRKRYRQLQAQYHPD--ASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYML 58

Query: 126 SLQNISIEEDSKGT-DQKLLMEILMLNEELDEASSEEDLENLQ 167
            L NI + ++     D    ME+L + +ELDE    +D   L+
Sbjct: 59  KLLNIDLTQEQTSERDTAFPMELLKVRDELDEIEQMDDEAGLE 101

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           + + +F +   + I+   L  +++ LQ   HPD+F   ++ EQ  +   S+ +N AY  L
Sbjct: 2   DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTL 61

Query: 115 QNPLKRGLYLLSLQNISIEEDSKGTDQKL--LMEILMLNEELDEASS----EEDLENLQT 168
           ++PL R  YLL+L +       + T + +  L+E   L EEL+EA      E+ L+ L  
Sbjct: 62  KDPLLRAEYLLALADGLDHAKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLGV 121

Query: 169 SIRATIEELTK 179
            I+A  + + K
Sbjct: 122 EIKADQDAIKK 132

Length = 174

>gnl|CDD|179335 PRK01773, hscB, co-chaperone HscB; Provisional

 Score = 58.6 bits (142), Expect = 4e-11
 Identities = 39/131 (29%), Positives = 77/131 (58%), Gaps = 5/131 (3%)

Query: 54  NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSI 113
           NN + +FD+ + + ++NA LS+++  LQ  LHPD F+N + +EQ ++   S+ +N A  I
Sbjct: 2   NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQI 61

Query: 114 LQNPLKRGLYLLSL---QNISIEEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSI 170
           L++P+ R   +++L   +  ++EE S   D   LM+ +   E+L+E   ++D + L T+ 
Sbjct: 62  LKDPILRAEAIIALNTGEQQNLEEKST-QDMAFLMQQMEWREQLEEIEQQQDEDAL-TAF 119

Query: 171 RATIEELTKKV 181
              I++  + +
Sbjct: 120 SKEIKQEQQAI 130

Length = 173

>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           NY+ +  +  +Y I+   L K++  +Q + HPDK   K  +E+  +   +S LN AYS L
Sbjct: 3   NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKA--KTLQEKEQNLIIASELNNAYSTL 60

Query: 115 QNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILM-LNEELDEASSEEDLENLQ 167
           ++ LKR  Y+L LQNI++ +E ++     L + I     E ++      DLE ++
Sbjct: 61  KDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEMERIENTILFSDLEKIK 115

Length = 166

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +YY +  +      ++ ++ K ++ L  + HPDK       E+   E     +N+AY +L
Sbjct: 1   DYYEILGVPRD--ASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKE-----INEAYEVL 53

Query: 115 QNPLKRGLYL 124
            +P KR +Y 
Sbjct: 54  SDPEKRAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|219548 pfam07743, HSCB_C, HSCB C-terminal oligomerisation domain

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 140 DQKLLMEILMLNEELDEAS---SEEDLENLQTSIRATIEELTKKVNN 183
           D + LME + L E L+EA     EE L+ L+  ++  I+EL +++  
Sbjct: 3   DPEFLMEQMELREALEEARASDDEEALDELKKEVKQRIKELLEELEE 49

This domain is the HSCB C-terminal oligomerisation domain and is found on co-chaperone proteins. Length = 78

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +YY +  +      +  ++ K ++ L  + HPDK     +E    +E     +N+AY +L
Sbjct: 2   DYYEILGVPRD--ASLDEIKKAYRKLALKYHPDKNPGDKEE----AEEKFKEINEAYEVL 55

Query: 115 QNPLK 119
            +P K
Sbjct: 56  SDPEK 60

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +YY++  +      ++ ++ K ++ L  + HPDK  +  + E+   E     +N+AY +L
Sbjct: 1   DYYDILGVP--PDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKE-----INEAYEVL 53

Query: 115 QN 116
            +
Sbjct: 54  SD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 52  PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAY 111
              +YY V  + ++   ++ ++ K F+ L  + HPDK     + E+   E     +N+AY
Sbjct: 2   ASKDYYEV--LGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKE-----INEAY 54

Query: 112 SILQNPLKRGLY 123
            +L +P K+  Y
Sbjct: 55  QVLSDPQKKAQY 66

Length = 380

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 70  NADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
             ++ K ++ L  + HPD      + EQ   E     +N+AY IL +P KR  Y
Sbjct: 19  EEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKE-----INEAYEILSDPQKRAQY 67

Length = 386

>gnl|CDD|235780 PRK06330, PRK06330, transcript cleavage factor/unknown domain fusion protein; Validated

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 66  YLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125
           Y++    LS      +SQL     S     ++ I   Y+ ++   +S L+N   R   + 
Sbjct: 273 YVLRPKGLS-----HESQLE-RSLSGSTDVDKKIQTIYT-FVRDLHSELKNEENRKSLIK 325

Query: 126 SLQNISIEEDSKGTDQKLLMEI-LMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
            LQ++ +EE     +  LL++  L+L+E L E SSE D EN+      + +++   VNN
Sbjct: 326 KLQDLDLEEL----NSALLLQRALLLSEFLGEKSSELDCENI---ASLSEDQIEDIVNN 377

Length = 718

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 8/53 (15%)

Query: 72  DLSKKFKHLQSQLHPDKFSNKNQE-EQAISETYSSYLNKAYSILQNPLKRGLY 123
           ++ K FK L  + HPD   NK+   E+   E     +N+AY++L +P KR +Y
Sbjct: 20  EIKKAFKKLARKYHPD--VNKSPGAEEKFKE-----INEAYTVLSDPEKRRIY 65

Length = 291

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 10/57 (17%)

Query: 69  NNADLSKKFKHLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLKRGLY 123
           +  ++ K ++ L  + HPD+  +K  EE+   I+E        AY +L +P KR  Y
Sbjct: 13  SEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINE--------AYEVLSDPEKRAQY 61

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 15/58 (25%)

Query: 71  ADLSKKFKHLQSQLHPDKFSNKNQEEQA-----ISETYSSYLNKAYSILQNPLKRGLY 123
            ++ K ++ L  + HPD+  N   +E       I+E        AY +L +P KR  Y
Sbjct: 19  EEIKKAYRKLAKKYHPDR--NPGDKEAEEKFKEINE--------AYEVLSDPEKRAAY 66

Length = 371

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 72  DLSKKFKHLQSQLHPDK-FSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
           ++ + +K L  + HPD+   N+ + EQ   E     + +AY +L +P KR +Y
Sbjct: 20  EIKRAYKRLVKEWHPDRHPENRKEAEQKFKE-----IQEAYEVLSDPQKRAMY 67

Length = 369

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PRK01773	173	hscB co-chaperone HscB; Provisional	100.0
PRK03578	176	hscB co-chaperone HscB; Provisional	100.0
PRK00294	173	hscB co-chaperone HscB; Provisional	100.0
PRK05014	171	hscB co-chaperone HscB; Provisional	100.0
PRK01356	166	hscB co-chaperone HscB; Provisional	100.0
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.97
KOG3192|consensus	168		99.96
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.76
KOG0713|consensus	336		99.72
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.71
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	99.71
PRK14288	369	chaperone protein DnaJ; Provisional	99.65
KOG0718|consensus	546		99.65
PRK14296	372	chaperone protein DnaJ; Provisional	99.62
PRK14286	372	chaperone protein DnaJ; Provisional	99.61
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.61
PRK14282	369	chaperone protein DnaJ; Provisional	99.61
PRK14279	392	chaperone protein DnaJ; Provisional	99.6
PRK14295	389	chaperone protein DnaJ; Provisional	99.59
PRK14297	380	chaperone protein DnaJ; Provisional	99.59
PRK14287	371	chaperone protein DnaJ; Provisional	99.58
PRK14301	373	chaperone protein DnaJ; Provisional	99.58
KOG0716|consensus	279		99.58
PRK14294	366	chaperone protein DnaJ; Provisional	99.57
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.57
PRK14277	386	chaperone protein DnaJ; Provisional	99.57
PRK14298	377	chaperone protein DnaJ; Provisional	99.57
PRK14276	380	chaperone protein DnaJ; Provisional	99.56
PRK14291	382	chaperone protein DnaJ; Provisional	99.56
PRK14299	291	chaperone protein DnaJ; Provisional	99.56
PRK14285	365	chaperone protein DnaJ; Provisional	99.56
PRK14280	376	chaperone protein DnaJ; Provisional	99.56
PRK10767	371	chaperone protein DnaJ; Provisional	99.55
PRK14281	397	chaperone protein DnaJ; Provisional	99.55
PRK14284	391	chaperone protein DnaJ; Provisional	99.55
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.55
PRK14290	365	chaperone protein DnaJ; Provisional	99.54
PRK14278	378	chaperone protein DnaJ; Provisional	99.54
PRK14283	378	chaperone protein DnaJ; Provisional	99.53
PRK14292	371	chaperone protein DnaJ; Provisional	99.53
PRK14293	374	chaperone protein DnaJ; Provisional	99.52
PRK14300	372	chaperone protein DnaJ; Provisional	99.52
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.52
KOG0712|consensus	337		99.52
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.52
PRK14289	386	chaperone protein DnaJ; Provisional	99.52
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.5
KOG0715|consensus	288		99.49
KOG0691|consensus	296		99.47
KOG0719|consensus	264		99.46
KOG0717|consensus	508		99.43
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.43
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.41
PHA03102	153	Small T antigen; Reviewed	99.35
KOG0721|consensus	230		99.33
KOG0624|consensus	504		99.19
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.18
KOG0720|consensus	490		99.08
KOG0722|consensus	329		99.05
PTZ00100	116	DnaJ chaperone protein; Provisional	99.05
PHA02624	647	large T antigen; Provisional	98.97
KOG0550|consensus	486		98.96
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.95
KOG0714|consensus	306		98.86
PF07743	78	HSCB_C: HSCB C-terminal oligomerisation domain; In	98.82
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.58
KOG1150|consensus	250		98.57
KOG1789|consensus	2235		97.81
KOG0568|consensus	342		97.78
KOG0723|consensus	112		97.58
PF13248	26	zf-ribbon_3: zinc-ribbon domain	97.02
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	96.74
KOG0431|consensus	453		96.73
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.12
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	95.42
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.73
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	93.98
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	92.6
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	92.58
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	92.53
PRK00420	112	hypothetical protein; Validated	91.32
PF12773	50	DZR: Double zinc ribbon	91.02
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	90.69
PF12773	50	DZR: Double zinc ribbon	90.1
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	88.97
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	88.32
PRK14559	645	putative protein serine/threonine phosphatase; Pro	88.28
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	87.81
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	87.7
COG1439	177	Predicted nucleic acid-binding protein, consists o	86.44
PF13877	94	RPAP3_C: Potential Monad-binding region of RPAP3	83.78
smart00661	52	RPOL9 RNA polymerase subunit 9.	83.6
PRK14559	645	putative protein serine/threonine phosphatase; Pro	82.21
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	82.05
COG0375	115	HybF Zn finger protein HypA/HybF (possibly regulat	81.81
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	81.16
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	80.35

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=100.00  E-value=1e-37  Score=251.10  Aligned_cols=129  Identities=28%  Similarity=0.509  Sum_probs=120.0

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc-CCCc
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQ-NISI  132 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~-g~~~  132 (183)
                      .|||++||||++|+||+..|+++|++||+++|||+|++.++.++++|.++|+.||+||+||+||++||.|+|.|+ |+++
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~   81 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQ   81 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999 8775


Q ss_pred             c-ccCccCCHHHHHHHHHHhHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513         133 E-EDSKGTDQKLLMEILMLNEELDEAS---SEEDLENLQTSIRATIEELTKKVN  182 (183)
Q Consensus       133 ~-~~~~~~d~~fLme~me~~E~le~a~---~~~~l~~l~~~~~~~i~~~~~~l~  182 (183)
                      . ++.+..||+|||++|||||+|+++.   +.++|..|..+|+++++++.++|.
T Consensus        82 ~~e~~~~~d~~fLme~ME~rE~lee~~~~~d~~~L~~l~~~v~~~~~~~~~~l~  135 (173)
T PRK01773         82 NLEEKSTQDMAFLMQQMEWREQLEEIEQQQDEDALTAFSKEIKQEQQAILTELS  135 (173)
T ss_pred             CcccccCCCHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 3467889999999999999999863   578899999999999999988764

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=100.00  E-value=2.9e-37  Score=249.07  Aligned_cols=131  Identities=23%  Similarity=0.529  Sum_probs=122.8

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCC
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNIS  131 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~  131 (183)
                      ...|||++||||++|++|..+|+++||+||+++|||++++.++.++..+.++|+.||+||+||+||.+|+.|++.++|++
T Consensus         4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~   83 (176)
T PRK03578          4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVD   83 (176)
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCC
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc-CccCCHHHHHHHHHHhHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513         132 IEED-SKGTDQKLLMEILMLNEELDEAS---SEEDLENLQTSIRATIEELTKKVN  182 (183)
Q Consensus       132 ~~~~-~~~~d~~fLme~me~~E~le~a~---~~~~l~~l~~~~~~~i~~~~~~l~  182 (183)
                      +..+ .+.+||+|||++|||||+|+++.   +.++|..|..+++++++++.++|.
T Consensus        84 ~~~e~~~~~d~~fLme~mE~rE~lee~~~~~d~~~L~~l~~e~~~~~~~~~~~l~  138 (176)
T PRK03578         84 VQAENNTAMPPAFLMQQMEWREAIEDARAARDVDALDALLAELRDERRERYAELG  138 (176)
T ss_pred             CccccCCCCCHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8654 67889999999999999999986   678999999999999999988764

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=100.00  E-value=3.5e-36  Score=242.17  Aligned_cols=129  Identities=26%  Similarity=0.513  Sum_probs=114.5

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCC
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNIS  131 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~  131 (183)
                      ...|||++||||++|+||..+|+++||+||+++|||++++.++.++..+.++|+.||+||+||+||.+|+.|+|.++|++
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~   81 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHE   81 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCccCCHHHHHHHHHHhHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8513         132 IEEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKV  181 (183)
Q Consensus       132 ~~~~~~~~d~~fLme~me~~E~le~a~~~~~l~~l~~~~~~~i~~~~~~l  181 (183)
                      +.++.+..|++|||++|||||+|+++.+.+++.+|.. +..+|+.+.+++
T Consensus        82 ~~~~~~~~d~~fLme~me~rE~le~~~~~~d~~~l~~-~~~~i~~~~~~l  130 (173)
T PRK00294         82 VPLEVTVHDPEFLLQQMQLREELEELQDEADLAGVAT-FKRRLKAAQDEL  130 (173)
T ss_pred             CCcccCCCCHHHHHHHHHHHHHHHhhcccccHHHHHH-HHHHHHHHHHHH
Confidence            8766567799999999999999999987766666544 555555555443

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=100.00  E-value=5.5e-36  Score=240.62  Aligned_cols=129  Identities=30%  Similarity=0.573  Sum_probs=119.1

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCCcc
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIE  133 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~  133 (183)
                      .|||++||||++|++|..+|+++||+||+++|||++++.++.++..+.++|+.||+||+||+||.+|+.|++.++|+++.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~   80 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA   80 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCCccc
Confidence            48999999999999999999999999999999999999888899999999999999999999999999999999999987


Q ss_pred             cc-CccCCHHHHHHHHHHhHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHhc
Q psy8513         134 ED-SKGTDQKLLMEILMLNEELDEASS----EEDLENLQTSIRATIEELTKKVN  182 (183)
Q Consensus       134 ~~-~~~~d~~fLme~me~~E~le~a~~----~~~l~~l~~~~~~~i~~~~~~l~  182 (183)
                      .+ .+..||+|||++|||||+|+++.+    .+.|.+|..+|+++++++.++|.
T Consensus        81 ~~~~~~~d~efLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~  134 (171)
T PRK05014         81 HEQHTVRDTAFLMEQMELREELEDIEQSKDPEAALESFIKRVKKMFKTRLQQMV  134 (171)
T ss_pred             cccCCcCCHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 567899999999999999999863    34599999999999999888764

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=100.00  E-value=1.6e-35  Score=236.92  Aligned_cols=127  Identities=26%  Similarity=0.375  Sum_probs=117.6

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCCcc
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIE  133 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~  133 (183)
                      .|||++||||++|++|..+|+++||+||+++|||++++  +.++..+.++|+.||+||+||+||.+|+.|+|.++|+++.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~--~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~~~   79 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT--LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINLN   79 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCCCC
Confidence            59999999999999999999999999999999999974  5567777889999999999999999999999999999987


Q ss_pred             cc--CccCCHHHHHHHHHHhHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513         134 ED--SKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVN  182 (183)
Q Consensus       134 ~~--~~~~d~~fLme~me~~E~le~a~~~~~l~~l~~~~~~~i~~~~~~l~  182 (183)
                      .+  .+.+||+|||++||+||+|+++.+.++|++|..+++.+++++..+|.
T Consensus        80 ~~~~~~~~d~~fLme~me~rE~le~~~~~~~L~~l~~~~~~~~~~~~~~l~  130 (166)
T PRK01356         80 DEKTRSLLSPLELSIFWDEMERIENTILFSDLEKIKNKYELMYKNEIDSLK  130 (166)
T ss_pred             CccccccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            64  36789999999999999999999999999999999999999988764

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.97  E-value=5.9e-31  Score=208.84  Aligned_cols=117  Identities=35%  Similarity=0.558  Sum_probs=108.3

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCCcccc-CccCCHHHH
Q psy8513          66 YLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEED-SKGTDQKLL  144 (183)
Q Consensus        66 ~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~~~-~~~~d~~fL  144 (183)
                      |+||..+|+++||+||+++|||++++.++.++..+.++|+.||+||+||+||.+|+.|+|.|+|+++..+ .+..|++||
T Consensus         1 f~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~~~~e~~~~~d~~fL   80 (157)
T TIGR00714         1 YQLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGIDLASEQHSVRDTAFL   80 (157)
T ss_pred             CCCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCcccCCCCCHHHH
Confidence            6899999999999999999999999988889999999999999999999999999999999999998765 567899999


Q ss_pred             HHHHHHhHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513         145 MEILMLNEELDEA---SSEEDLENLQTSIRATIEELTKKVN  182 (183)
Q Consensus       145 me~me~~E~le~a---~~~~~l~~l~~~~~~~i~~~~~~l~  182 (183)
                      |++|||||+|+++   .+.++|+.|..+++++++++.+.|.
T Consensus        81 me~Me~rE~lee~~~~~d~~~L~~l~~~~~~~~~~~~~~l~  121 (157)
T TIGR00714        81 MEQLELREELDEIEQAKDEARLESFIKRVKKMFQTRHQLLV  121 (157)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998765   4678899999999999999988764

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG3192|consensus

Probab=99.96  E-value=7.2e-29  Score=194.47  Aligned_cols=134  Identities=28%  Similarity=0.518  Sum_probs=124.9

Q ss_pred             cCCCCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513          48 QKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL  127 (183)
Q Consensus        48 q~~~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l  127 (183)
                      ++.+...+||.+||....+.+|++.+...|...++++|||+.......+...|.+.|+.||+||.||+||++||.|++.+
T Consensus         2 ~~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl   81 (168)
T KOG3192|consen    2 LKMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL   81 (168)
T ss_pred             cccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            45566789999999999999999999999999999999999888877788899999999999999999999999999999


Q ss_pred             cCCCccccCccCCHHHHHHHHHHhHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8513         128 QNISIEEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKV  181 (183)
Q Consensus       128 ~g~~~~~~~~~~d~~fLme~me~~E~le~a~~~~~l~~l~~~~~~~i~~~~~~l  181 (183)
                      .|+...++....||+|||+|||++|+|.++++.++|..+.++|+++|+++..+|
T Consensus        82 ~g~e~~sne~stDpe~Lmevle~~E~IS~~~De~~l~~lk~q~q~ri~q~~~ql  135 (168)
T KOG3192|consen   82 KGQEQTSNELSTDPEFLMEVLEYHEAISEMDDEEDLKQLKSQNQERIAQCKQQL  135 (168)
T ss_pred             hCCCCchhhhccCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999887765666999999999999999999999999999999999999999886

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=9.3e-19  Score=154.84  Aligned_cols=66  Identities=24%  Similarity=0.492  Sum_probs=59.9

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..|||++|||+++++.  ++||+|||+|+++||||++...     +.|+++|+.||+||++|+||.+|+.|+.
T Consensus         3 ~~dyYeiLGV~k~As~--~EIKkAYRkLA~kyHPD~n~g~-----~~AeeKFKEI~eAYEVLsD~eKRa~YD~   68 (371)
T COG0484           3 KRDYYEILGVSKDASE--EEIKKAYRKLAKKYHPDRNPGD-----KEAEEKFKEINEAYEVLSDPEKRAAYDQ   68 (371)
T ss_pred             ccchhhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHHHHHhCCHHHHHHhhc
Confidence            4699999999999775  9999999999999999999863     2467999999999999999999999974

>KOG0713|consensus

Probab=99.72  E-value=8.2e-18  Score=146.24  Aligned_cols=72  Identities=21%  Similarity=0.367  Sum_probs=64.6

Q ss_pred             cCCCCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          48 QKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        48 q~~~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      +++...+|||+||||+.+++.  .+||+|||+|++++||||+++.+.     |.+.|+.||.||+||+||.+|..|+-.
T Consensus        10 ~~v~~~rDfYelLgV~k~Asd--~eIKkAYRKLALk~HPDkNpddp~-----A~e~F~~in~AYEVLsDpekRk~YD~~   81 (336)
T KOG0713|consen   10 EAVLAGRDFYELLGVPKNASD--QEIKKAYRKLALKYHPDKNPDDPN-----ANEKFKEINAAYEVLSDPEKRKHYDTY   81 (336)
T ss_pred             hhhhcCCCHHHHhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence            345567899999999999886  999999999999999999988754     578999999999999999999999864

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.71  E-value=1.3e-17  Score=112.48  Aligned_cols=64  Identities=31%  Similarity=0.519  Sum_probs=58.2

Q ss_pred             ChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy8513          55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYL  124 (183)
Q Consensus        55 ~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yl  124 (183)
                      |||++|||+++.+  .++|+++|+++++++|||++++.+    ..+.+.+..|++||++|+||.+|+.|+
T Consensus         1 ~~y~iLgl~~~~~--~~eik~~y~~l~~~~HPD~~~~~~----~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDAS--DEEIKKAYRRLSKQYHPDKNSGDE----AEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSS--HHHHHHHHHHHHHHTSTTTGTSTH----HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCC--HHHHHHHHHhhhhccccccchhhh----hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6999999999755  599999999999999999998764    567789999999999999999999995

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=9.8e-18  Score=134.86  Aligned_cols=128  Identities=30%  Similarity=0.478  Sum_probs=114.9

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc-CCCc
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQ-NISI  132 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~-g~~~  132 (183)
                      .+||.+||+++.|.+|.+.++..|+.+++.+|||++...+..++..+.+.+..+|.||.||+||+.|+.|++.+. |...
T Consensus         1 ~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~~~   80 (174)
T COG1076           1 SDGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLDH   80 (174)
T ss_pred             CCcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccccc
Confidence            379999999999999999999999999999999999999999999999999999999999999999999999998 7655


Q ss_pred             ccc-CccCCHHHHHHHHHHhHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHh
Q psy8513         133 EED-SKGTDQKLLMEILMLNEELDEASS----EEDLENLQTSIRATIEELTKKV  181 (183)
Q Consensus       133 ~~~-~~~~d~~fLme~me~~E~le~a~~----~~~l~~l~~~~~~~i~~~~~~l  181 (183)
                      ..+ .+..+..|+|++|+++|+++.+..    .+.+..+...++..++.+.+.+
T Consensus        81 ~~e~~~l~~~~~l~~~~~~~~e~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~~  134 (174)
T COG1076          81 AKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLGVEIKADQDAIKKAY  134 (174)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHcccchhHHHHhcCchhhhHHHHHHHH
Confidence            433 678889999999999999998752    4668888888888888887765

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=2e-16  Score=140.63  Aligned_cols=65  Identities=25%  Similarity=0.477  Sum_probs=58.3

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++||++||+|+++||||++....     .|.+.|+.||+||++|+||.+|+.|+.
T Consensus         3 ~dyY~vLgv~~~As~--~eIkkayrkla~k~HPD~~~~~~-----~a~~~f~~i~~AYevLsd~~kR~~YD~   67 (369)
T PRK14288          3 LSYYEILEVEKHSNQ--ETIKKSYRKLALKYHPDRNAGDK-----EAEEKFKLINEAYGVLSDEKKRALYDR   67 (369)
T ss_pred             CChHHHcCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCcc-----HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            699999999999765  99999999999999999986432     256899999999999999999999986

>KOG0718|consensus

Probab=99.65  E-value=3e-16  Score=141.18  Aligned_cols=69  Identities=22%  Similarity=0.487  Sum_probs=63.8

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..+||.+||||+.++.  ++|+++||++.+.|||||+..  +.+++.|++.|..|..||++|+||.+|+.|+.
T Consensus         8 e~e~Ya~LNlpkdAt~--eeI~~AYrr~~~lfHPDkh~d--pd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~   76 (546)
T KOG0718|consen    8 EIELYALLNLPKDATD--EEIKKAYRRLSRLFHPDKHTD--PDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN   76 (546)
T ss_pred             hhhHHHHhCCCcccCH--HHHHHHHHHHHHhcCCcccCC--hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            3599999999999886  999999999999999999975  46788899999999999999999999999986

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=6e-16  Score=137.70  Aligned_cols=65  Identities=22%  Similarity=0.330  Sum_probs=57.9

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..|||++|||+++++.  ++||++||+|+++||||++...      .|.++|+.||+||++|+||.+|+.|+.
T Consensus         3 ~~dyY~~Lgv~~~a~~--~eik~ayrkla~~~HPD~n~~~------~a~~~F~~i~~AyevLsD~~KR~~YD~   67 (372)
T PRK14296          3 KKDYYEVLGVSKTASE--QEIRQAYRKLAKQYHPDLNKSP------DAHDKMVEINEAADVLLDKDKRKQYDQ   67 (372)
T ss_pred             CCCHHHhcCCCCCCCH--HHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence            3699999999998664  9999999999999999997532      256899999999999999999999986

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=8.5e-16  Score=136.68  Aligned_cols=65  Identities=26%  Similarity=0.436  Sum_probs=58.5

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||++....     .|.+.|+.|++||++|+||.+|+.|+.
T Consensus         4 ~d~y~~Lgv~~~a~~--~eik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~kR~~YD~   68 (372)
T PRK14286          4 RSYYDILGVSKSAND--EEIKSAYRKLAIKYHPDKNKGNK-----ESEEKFKEATEAYEILRDPKKRQAYDQ   68 (372)
T ss_pred             CCHHHhcCCCCCCCH--HHHHHHHHHHHHHHCcCCCCCch-----HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            599999999999876  89999999999999999986432     256899999999999999999999986

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.61  E-value=1.7e-15  Score=100.52  Aligned_cols=60  Identities=25%  Similarity=0.516  Sum_probs=53.0

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchh
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLK  119 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~  119 (183)
                      .|||++|||+++  .+..+|+++|+++++.+|||++++.    ...+.+.|..|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~--~~~~~ik~ay~~l~~~~HPD~~~~~----~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRD--ASLDEIKKAYRKLALKYHPDKNPGD----KEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc----hHHHHHHHHHHHHHHHHHcCCCC
Confidence            489999999998  4569999999999999999999764    45677899999999999999853

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=1.1e-15  Score=135.63  Aligned_cols=67  Identities=22%  Similarity=0.518  Sum_probs=59.0

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..|||++|||+++++.  ++|+++||+|+++||||++...    +..|.+.|+.||+||++|+||.+|+.|+.
T Consensus         3 ~~d~y~~lgv~~~a~~--~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~   69 (369)
T PRK14282          3 KKDYYEILGVSRNATQ--EEIKRAYKRLVKEWHPDRHPEN----RKEAEQKFKEIQEAYEVLSDPQKRAMYDR   69 (369)
T ss_pred             CCChHHhcCCCCCCCH--HHHHHHHHHHHHHHCCCCCccc----hhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence            3699999999998665  9999999999999999998542    22367899999999999999999999986

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1.3e-15  Score=136.34  Aligned_cols=67  Identities=21%  Similarity=0.400  Sum_probs=59.3

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      ..|||++|||+++++.  ++||++||+|+++||||++....     .|.+.|+.|++||++|+||.+|+.|+..
T Consensus         8 ~~Dyy~~Lgv~~~a~~--~eik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vLsD~~KR~~YD~~   74 (392)
T PRK14279          8 EKDFYKELGVSSDASA--EEIKKAYRKLARELHPDANPGDP-----AAEERFKAVSEAHDVLSDPAKRKEYDET   74 (392)
T ss_pred             ccCHHHhcCCCCCCCH--HHHHHHHHHHHHHHCcCCCCCCh-----HHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence            3699999999998775  99999999999999999986432     3567999999999999999999999863

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.9e-15  Score=135.20  Aligned_cols=65  Identities=25%  Similarity=0.422  Sum_probs=58.0

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||++....     .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         9 ~d~y~~Lgv~~~a~~--~eik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          9 KDYYKVLGVPKDATE--AEIKKAYRKLAREYHPDANKGDA-----KAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             cCHHHhcCCCCCCCH--HHHHHHHHHHHHHHCCCcCCCch-----hHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            599999999998665  99999999999999999986432     356899999999999999999999995

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.5e-15  Score=135.27  Aligned_cols=65  Identities=28%  Similarity=0.493  Sum_probs=58.4

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||++....     .|++.|+.||+||++|+||.+|+.|+.
T Consensus         4 ~d~y~~Lgv~~~a~~--~~ik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~~r~~yD~   68 (380)
T PRK14297          4 KDYYEVLGLEKGASD--DEIKKAFRKLAIKYHPDKNKGNK-----EAEEKFKEINEAYQVLSDPQKKAQYDQ   68 (380)
T ss_pred             CChHHhhCCCCCCCH--HHHHHHHHHHHHHHCcCCCCCcH-----HHHHHHHHHHHHHHHhcCHhhhCchhh
Confidence            699999999999775  89999999999999999986532     356899999999999999999999986

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=2.5e-15  Score=133.64  Aligned_cols=64  Identities=23%  Similarity=0.439  Sum_probs=57.5

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||++...      .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         4 ~d~y~~Lgv~~~a~~--~eik~ayr~la~~~HpD~~~~~------~~~~~f~~i~~Ay~~L~d~~kR~~YD~   67 (371)
T PRK14287          4 RDYYEVLGVDRNASV--DEVKKAYRKLARKYHPDVNKAP------DAEDKFKEVKEAYDTLSDPQKKAHYDQ   67 (371)
T ss_pred             CCHHHhcCCCCCCCH--HHHHHHHHHHHHHHCcCCCCCh------hHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence            599999999999876  8999999999999999997531      246789999999999999999999986

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=2.1e-15  Score=134.18  Aligned_cols=65  Identities=25%  Similarity=0.413  Sum_probs=58.0

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||+++...     .+.+.|+.|++||++|+||.+|+.|+.
T Consensus         4 ~~~y~~Lgv~~~a~~--~~ik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~kr~~yD~   68 (373)
T PRK14301          4 RDYYEVLGVSRDASE--DEIKKAYRKLALQYHPDRNPDNP-----EAEQKFKEAAEAYEVLRDAEKRARYDR   68 (373)
T ss_pred             CChHHhcCCCCCCCH--HHHHHHHHHHHHHhCCCcCCCCh-----HHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence            699999999998664  89999999999999999986542     256789999999999999999999986

>KOG0716|consensus

Probab=99.58  E-value=4.5e-15  Score=125.94  Aligned_cols=67  Identities=25%  Similarity=0.454  Sum_probs=60.0

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      ..++|++||++++++-  ++||++||+|++++|||+.+..++     +.++|..||+||++|+||.+|-.|+..
T Consensus        30 ~~~LYdVLgl~k~at~--d~IKKaYR~L~~k~HPD~~gd~P~-----~~dkf~eIN~Ay~ILsD~~kR~~YD~~   96 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATK--DEIKKAYRKLALKYHPDKNGDNPE-----ATDKFKEINTAYAILSDPTKRNVYDEY   96 (279)
T ss_pred             hhHHHHHhCCCcccch--HHHHHHHHHHHHHhCCCcCCCCch-----hHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence            6799999999997654  789999999999999999987643     468999999999999999999999864

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=3.4e-15  Score=132.52  Aligned_cols=66  Identities=24%  Similarity=0.534  Sum_probs=58.2

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..|||++|||+++++  .++|+++||+|+++||||++....     .+.+.|+.|++||++|+||.+|+.|+.
T Consensus         3 ~~d~y~~lgv~~~a~--~~eik~ayr~la~~~HPD~~~~~~-----~~~~~f~~~~~Ay~vL~d~~~r~~yD~   68 (366)
T PRK14294          3 KRDYYEILGVTRDAS--EEEIKKSYRKLAMKYHPDRNPGDK-----EAEELFKEAAEAYEVLSDPKKRGIYDQ   68 (366)
T ss_pred             CCChHHHhCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCch-----HHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence            369999999999765  599999999999999999986532     256789999999999999999999986

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.57  E-value=6.7e-15  Score=95.87  Aligned_cols=55  Identities=24%  Similarity=0.543  Sum_probs=49.2

Q ss_pred             ChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy8513          55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQN  116 (183)
Q Consensus        55 ~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~d  116 (183)
                      |||++|||+++.  +.++|+++|++|++++|||+.++.     ..+.+.+..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~--~~~~ik~~y~~l~~~~HPD~~~~~-----~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDA--SDEEIKKAYRKLALKYHPDKNPDD-----PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHhcC
Confidence            799999999764  569999999999999999999764     4567899999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=3.8e-15  Score=133.10  Aligned_cols=65  Identities=26%  Similarity=0.507  Sum_probs=58.1

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++  .++|+++||+|+++||||++....     .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         5 ~d~y~~Lgv~~~a~--~~eik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~kr~~yD~   69 (386)
T PRK14277          5 KDYYEILGVDRNAT--EEEIKKAYRRLAKKYHPDLNPGDK-----EAEQKFKEINEAYEILSDPQKRAQYDQ   69 (386)
T ss_pred             CCHHHhcCCCCCCC--HHHHHHHHHHHHHHHCCCcCCCch-----HHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            69999999999866  499999999999999999986432     256789999999999999999999986

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=3.4e-15  Score=133.09  Aligned_cols=64  Identities=25%  Similarity=0.479  Sum_probs=57.1

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||+++..      .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         5 ~d~y~iLgv~~~a~~--~eik~ayr~la~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~kR~~YD~   68 (377)
T PRK14298          5 RDYYEILGLSKDASV--EDIKKAYRKLAMKYHPDKNKEP------DAEEKFKEISEAYAVLSDAEKRAQYDR   68 (377)
T ss_pred             CCHHHhhCCCCCCCH--HHHHHHHHHHHHHhCccccCCh------hHHHHHHHHHHHHHHhcchHhhhhhhh
Confidence            599999999998664  8999999999999999998532      245789999999999999999999985

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=4.4e-15  Score=132.42  Aligned_cols=64  Identities=23%  Similarity=0.412  Sum_probs=57.4

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||++...      .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         4 ~d~y~~Lgv~~~a~~--~eik~ayr~la~~~HpD~~~~~------~a~~~f~~i~~Ay~vL~d~~kR~~YD~   67 (380)
T PRK14276          4 TEYYDRLGVSKDASQ--DEIKKAYRKLSKKYHPDINKEP------GAEEKYKEVQEAYETLSDPQKRAAYDQ   67 (380)
T ss_pred             CCHHHhhCCCCCCCH--HHHHHHHHHHHHHHCcCCCCCc------CHHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence            699999999998664  9999999999999999998643      246789999999999999999999986

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=4.2e-15  Score=132.66  Aligned_cols=65  Identities=28%  Similarity=0.484  Sum_probs=58.1

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||++...      .+.+.|+.|++||++|+||.+|+.|+..
T Consensus         3 ~d~Y~~Lgv~~~a~~--~~ik~ayr~la~~~HPD~~~~~------~~~~~f~~i~~Ay~vLsd~~kR~~YD~~   67 (382)
T PRK14291          3 KDYYEILGVSRNATQ--EEIKKAYRRLARKYHPDFNKNP------EAEEKFKEINEAYQVLSDPEKRKLYDQF   67 (382)
T ss_pred             CCHHHhhCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCc------cHHHHHHHHHHHHHHhcCHHHHHHHhhh
Confidence            699999999998765  9999999999999999998642      2467899999999999999999999863

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=5.1e-15  Score=127.70  Aligned_cols=64  Identities=28%  Similarity=0.504  Sum_probs=57.3

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++  .++||++||+|+++||||++...      .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         4 ~d~y~vLgv~~~a~--~~eik~ayr~la~~~HPD~~~~~------~~~~~f~~i~~Ay~~L~d~~kr~~yD~   67 (291)
T PRK14299          4 KDYYAILGVPKNAS--QDEIKKAFKKLARKYHPDVNKSP------GAEEKFKEINEAYTVLSDPEKRRIYDT   67 (291)
T ss_pred             CCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCh------hHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence            69999999999865  59999999999999999998532      256789999999999999999999986

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=5.3e-15  Score=131.32  Aligned_cols=65  Identities=22%  Similarity=0.401  Sum_probs=58.1

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||++....     .+.+.|..|++||++|+||.+|+.|+.
T Consensus         3 ~d~y~iLgv~~~a~~--~eIk~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~kr~~yd~   67 (365)
T PRK14285          3 RDYYEILGLSKGASK--DEIKKAYRKIAIKYHPDKNKGNK-----EAESIFKEATEAYEVLIDDNKRAQYDR   67 (365)
T ss_pred             CCHHHhcCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCH-----HHHHHHHHHHHHHHHHcCcchhHHHHh
Confidence            599999999998665  99999999999999999976432     256799999999999999999999986

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=5.2e-15  Score=131.78  Aligned_cols=64  Identities=22%  Similarity=0.415  Sum_probs=57.5

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||++...      .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         4 ~~~y~iLgv~~~a~~--~eik~ayr~la~~~HpD~~~~~------~a~~~f~~i~~Ay~vL~d~~kr~~yD~   67 (376)
T PRK14280          4 RDYYEVLGVSKSASK--DEIKKAYRKLSKKYHPDINKEE------GADEKFKEISEAYEVLSDDQKRAQYDQ   67 (376)
T ss_pred             CChHHhhCCCCCCCH--HHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHhccHhHHHHHHh
Confidence            599999999998765  9999999999999999998642      256789999999999999999999986

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=6.4e-15  Score=130.85  Aligned_cols=66  Identities=24%  Similarity=0.479  Sum_probs=58.4

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..|||++|||+++++.  ++|+++||+|+++||||++....     .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         3 ~~d~y~iLgv~~~as~--~eik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~yd~   68 (371)
T PRK10767          3 KRDYYEVLGVSRNASE--DEIKKAYRKLAMKYHPDRNPGDK-----EAEEKFKEIKEAYEVLSDPQKRAAYDQ   68 (371)
T ss_pred             CCChHHhcCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCcH-----HHHHHHHHHHHHHHHhcchhhhhHhhh
Confidence            3699999999998664  99999999999999999986432     256899999999999999999999985

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=5.8e-15  Score=132.38  Aligned_cols=65  Identities=28%  Similarity=0.444  Sum_probs=58.0

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++  .++|+++||+|+++||||++....     .|.+.|+.||+||++|+||.+|+.|+.
T Consensus         3 ~d~y~iLgv~~~a~--~~eikkayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~~r~~yD~   67 (397)
T PRK14281          3 RDYYEVLGVSRSAD--KDEIKKAYRKLALKYHPDKNPDNK-----EAEEHFKEVNEAYEVLSNDDKRRRYDQ   67 (397)
T ss_pred             CChhhhcCCCCCCC--HHHHHHHHHHHHHHHCCCcCCCch-----HHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            59999999999865  599999999999999999986532     256899999999999999999999986

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=6.5e-15  Score=131.76  Aligned_cols=65  Identities=23%  Similarity=0.416  Sum_probs=57.7

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++  .++||++||+|+++||||++....     .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         1 ~d~y~iLgv~~~a~--~~eikkayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~kR~~YD~   65 (391)
T PRK14284          1 MDYYTILGVSKTAS--PEEIKKAYRKLAVKYHPDKNPGDA-----EAEKRFKEVSEAYEVLSDAQKRESYDR   65 (391)
T ss_pred             CCHHHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCch-----HHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence            48999999999855  599999999999999999986532     356789999999999999999999986

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.55  E-value=4e-15  Score=134.42  Aligned_cols=62  Identities=24%  Similarity=0.488  Sum_probs=56.1

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..|||++|||+++++.  ++||++||+|+++||||++..         .+.|+.||+||++|+||.+|+.|+.
T Consensus        27 ~~d~Y~vLGV~~~As~--~eIKkAYrkla~k~HPDk~~~---------~e~F~~i~~AYevLsD~~kR~~YD~   88 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTT--SEIKKAYRKLAIKHHPDKGGD---------PEKFKEISRAYEVLSDPEKRKIYDE   88 (421)
T ss_pred             chhHHHHcCCCCCCCH--HHHHHHHHHHHHHHCCCCCch---------HHHHHHHHHHHHHhccHHHHHHHhh
Confidence            4699999999998765  999999999999999999631         2689999999999999999999986

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=9.1e-15  Score=129.74  Aligned_cols=66  Identities=27%  Similarity=0.514  Sum_probs=58.5

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++  .++|+++||+|+++||||++...    ++.|.+.|+.||+||++|+||.+|+.|+.
T Consensus         3 ~d~y~vLgv~~~a~--~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~   68 (365)
T PRK14290          3 KDYYKILGVDRNAS--QEDIKKAFRELAKKWHPDLHPGN----KAEAEEKFKEISEAYEVLSDPQKRRQYDQ   68 (365)
T ss_pred             CChhhhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCc----hhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence            59999999999865  49999999999999999997542    33467899999999999999999999986

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=8.6e-15  Score=130.50  Aligned_cols=64  Identities=23%  Similarity=0.454  Sum_probs=57.4

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||++..      ..+.+.|+.|++||++|+||.+|+.|+.
T Consensus         3 ~d~y~iLgv~~~a~~--~eik~ayr~la~~~hpD~~~~------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~   66 (378)
T PRK14278          3 RDYYGLLGVSRNASD--AEIKRAYRKLARELHPDVNPD------EEAQEKFKEISVAYEVLSDPEKRRIVDL   66 (378)
T ss_pred             CCcceecCCCCCCCH--HHHHHHHHHHHHHHCCCCCCc------HHHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence            599999999998764  999999999999999999852      1356899999999999999999999985

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1e-14  Score=129.89  Aligned_cols=65  Identities=23%  Similarity=0.396  Sum_probs=58.4

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..|||++|||+++++.  ++|+++||+|+++||||++..      ..|.+.|+.|++||++|+||.+|+.|+.
T Consensus         4 ~~d~y~~Lgv~~~a~~--~eik~ayr~la~~~HPD~~~~------~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~   68 (378)
T PRK14283          4 KRDYYEVLGVDRNADK--KEIKKAYRKLARKYHPDVSEE------EGAEEKFKEISEAYAVLSDDEKRQRYDQ   68 (378)
T ss_pred             cCChHHhhCCCCCCCH--HHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence            4699999999998775  999999999999999999753      1367899999999999999999999986

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1.3e-14  Score=128.78  Aligned_cols=64  Identities=22%  Similarity=0.414  Sum_probs=57.6

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++||+|++++|||++...      .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         2 ~d~y~~Lgv~~~a~~--~~ik~ayr~l~~~~hpD~~~~~------~a~~~~~~i~~Ay~vL~d~~~r~~yd~   65 (371)
T PRK14292          2 MDYYELLGVSRTASA--DEIKSAYRKLALKYHPDRNKEK------GAAEKFAQINEAYAVLSDAEKRAHYDR   65 (371)
T ss_pred             CChHHHcCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCh------hHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence            599999999998765  8999999999999999998632      256789999999999999999999986

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.7e-14  Score=128.39  Aligned_cols=64  Identities=23%  Similarity=0.483  Sum_probs=57.1

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++  .++|+++||+|+++||||++....      +.+.|+.||+||++|+||.+|+.|+.
T Consensus         3 ~d~y~vLgv~~~a~--~~eik~ayr~la~~~HPD~~~~~~------a~~~f~~i~~Ay~vL~~~~~R~~yd~   66 (374)
T PRK14293          3 ADYYEILGVSRDAD--KDELKRAYRRLARKYHPDVNKEPG------AEDRFKEINRAYEVLSDPETRARYDQ   66 (374)
T ss_pred             CChhhhcCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCcC------HHHHHHHHHHHHHHHhchHHHHHHhh
Confidence            59999999999755  599999999999999999986432      45789999999999999999999986

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.6e-14  Score=128.56  Aligned_cols=64  Identities=31%  Similarity=0.484  Sum_probs=57.1

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++  .++|+++||+|+++||||++...      .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         3 ~~~y~iLgv~~~as--~~eik~ayr~la~~~HPD~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yD~   66 (372)
T PRK14300          3 QDYYQILGVSKTAS--QADLKKAYLKLAKQYHPDTTDAK------DAEKKFKEINAAYDVLKDEQKRAAYDR   66 (372)
T ss_pred             CChHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCc------CHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence            59999999999866  49999999999999999998632      245789999999999999999999986

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.52  E-value=1.6e-14  Score=125.40  Aligned_cols=65  Identities=18%  Similarity=0.349  Sum_probs=57.8

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      .|||++|||+++++.  ++|+++||+|+++||||+....      .+.+.|+.||+||++|+||.+|+.|+..
T Consensus         4 ~d~y~~Lgv~~~a~~--~eik~ayr~la~k~HPD~~~~~------~~~~~f~~i~~Ay~~L~~~~kr~~yD~~   68 (306)
T PRK10266          4 KDYYAIMGVKPTDDL--KTIKTAYRRLARKYHPDVSKEP------DAEARFKEVAEAWEVLSDEQRRAEYDQL   68 (306)
T ss_pred             CChHHHcCCCCCCCH--HHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            599999999998665  9999999999999999996432      3578999999999999999999999863

>KOG0712|consensus

Probab=99.52  E-value=1.4e-14  Score=126.94  Aligned_cols=64  Identities=22%  Similarity=0.440  Sum_probs=58.8

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      ...||++|||++.++.  ++||++||+|+++|||||+.+        +.++|+.|..||++|+||.+|..|+..
T Consensus         3 ~~~~y~il~v~~~As~--~eikkayrkla~k~HpDkn~~--------~~ekfkei~~AyevLsd~ekr~~yD~~   66 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASE--EEIKKAYRKLALKYHPDKNPD--------AGEKFKEISQAYEVLSDPEKREIYDQY   66 (337)
T ss_pred             ccccceeeccCCCcCH--HHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence            4589999999998775  999999999999999999987        468999999999999999999999763

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.52  E-value=1.3e-14  Score=127.99  Aligned_cols=63  Identities=27%  Similarity=0.547  Sum_probs=56.2

Q ss_pred             ChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        55 ~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      |||++|||+++++  .++|+++||+|+++||||++...      .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         1 d~y~~Lgv~~~a~--~~~ik~ayr~la~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~~R~~yd~   63 (354)
T TIGR02349         1 DYYEILGVSKDAS--EEEIKKAYRKLAKKYHPDRNKDK------EAEEKFKEINEAYEVLSDPEKRAQYDQ   63 (354)
T ss_pred             ChHHhCCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCc------cHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence            7999999999865  59999999999999999998621      246789999999999999999999976

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=2.1e-14  Score=128.19  Aligned_cols=66  Identities=26%  Similarity=0.444  Sum_probs=59.0

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..|||++|||+++++.  ++|+++||+|+++||||++....     .+.+.|+.|++||++|+||.+|+.|+.
T Consensus         4 ~~~~y~~Lgv~~~a~~--~eik~ayr~la~~~HpD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~yD~   69 (386)
T PRK14289          4 KRDYYEVLGVSKTATV--DEIKKAYRKKAIQYHPDKNPGDK-----EAEEKFKEAAEAYDVLSDPDKRSRYDQ   69 (386)
T ss_pred             cCCHHHHcCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCh-----HHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3699999999999776  89999999999999999986532     256789999999999999999999986

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.50  E-value=2.4e-13  Score=131.42  Aligned_cols=80  Identities=16%  Similarity=0.201  Sum_probs=64.2

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCCc
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISI  132 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~  132 (183)
                      ..+||++|||+++++.  .+||++||+|++++|||++.+.      .+.+.|+.|++||++|+||.+|+.|+.  +|...
T Consensus       572 d~dYYdILGVs~dAS~--~EIKKAYRKLAlkyHPDKN~~~------~A~ekFq~I~EAYeVLSDp~kRk~YD~--~G~~G  641 (1136)
T PTZ00341        572 DTLFYDILGVGVNADM--KEISERYFKLAENYYPPKRSGN------EGFHKFKKINEAYQILGDIDKKKMYNK--FGYDG  641 (1136)
T ss_pred             CCChHHHcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHhCCHHHHHHHhh--ccccc
Confidence            4799999999999775  9999999999999999998653      256799999999999999999999975  34332


Q ss_pred             cccCccCCHH
Q psy8513         133 EEDSKGTDQK  142 (183)
Q Consensus       133 ~~~~~~~d~~  142 (183)
                      ..+...+||.
T Consensus       642 l~~~~~iDP~  651 (1136)
T PTZ00341        642 IKGVNFIHPS  651 (1136)
T ss_pred             cCCCCccCHH
Confidence            2222345554

>KOG0715|consensus

Probab=99.49  E-value=4.6e-14  Score=121.94  Aligned_cols=83  Identities=19%  Similarity=0.302  Sum_probs=68.6

Q ss_pred             ccCCCCCCCcCCCCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCch
Q psy8513          39 LFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPL  118 (183)
Q Consensus        39 ~fC~~C~~~q~~~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~  118 (183)
                      .+|..+...--+....|||++||++++++.  .+||++|++|+++||||.+..+      .+.+.|+.|.+||++|+|+.
T Consensus        28 ~~~~r~~~~s~~~~~~d~Y~vLgv~~~At~--~EIK~Af~~LaKkyHPD~n~~~------~a~~kF~eI~~AYEiLsd~e   99 (288)
T KOG0715|consen   28 ALNTRKFHASRIISKEDYYKVLGVSRNATL--SEIKSAFRKLAKKYHPDVNKDK------EASKKFKEISEAYEILSDEE   99 (288)
T ss_pred             ccccceeeecccCCCcchhhhhCcCCCCCH--HHHHHHHHHHHHhhCCCCCCCc------chhhHHHHHHHHHHHhcCHH
Confidence            444444443333344499999999999887  9999999999999999998765      45789999999999999999


Q ss_pred             hHHHHHHHhcC
Q psy8513         119 KRGLYLLSLQN  129 (183)
Q Consensus       119 ~Ra~Yll~l~g  129 (183)
                      +|.+|+..+.+
T Consensus       100 KR~~YD~~~~~  110 (288)
T KOG0715|consen  100 KRQEYDVYGLE  110 (288)
T ss_pred             HHHHHHHhhhh
Confidence            99999987664

>KOG0691|consensus

Probab=99.47  E-value=2.6e-13  Score=117.42  Aligned_cols=69  Identities=23%  Similarity=0.377  Sum_probs=62.4

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQ  128 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~  128 (183)
                      ..|||+||||.+..+.  .+|+++||..++.+||||+.+.+.     |.+.|+.+.+||++|+||.+|+.|+--+.
T Consensus         4 ~~dyY~lLgi~~~at~--~eIkKaYr~kaL~~HPDKNp~dP~-----A~ekFq~L~eAy~VL~D~~~R~~YDk~~k   72 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATD--AEIKKAYRKKALQYHPDKNPGDPQ-----AAEKFQELSEAYEVLSDEESRAAYDKLRK   72 (296)
T ss_pred             cchHHHHhCCCCCCCH--HHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence            5799999999998775  999999999999999999988754     67999999999999999999999986554

>KOG0719|consensus

Probab=99.46  E-value=3.3e-13  Score=112.70  Aligned_cols=68  Identities=28%  Similarity=0.446  Sum_probs=61.9

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..+.|+||||..+++-  .+|+++||+|++++|||+..   +..+..+...|+.+++||++|+|..+|+.|+-
T Consensus        13 ~~d~YevLGVer~a~~--~eIrkAY~klal~~HPDk~~---eed~~ea~~kFq~l~k~y~iLsDeekR~~YDe   80 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATD--KEIRKAYHKLALRLHPDKNH---EEDKVEATEKFQQLQKAYQILSDEEKRAVYDE   80 (264)
T ss_pred             ccCHHHHhhhcccCCH--HHHHHHHHHHHHHhCCCcch---hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            3599999999998764  99999999999999999985   56777899999999999999999999999974

>KOG0717|consensus

Probab=99.43  E-value=2e-13  Score=122.83  Aligned_cols=70  Identities=23%  Similarity=0.396  Sum_probs=60.9

Q ss_pred             CCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          51 DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        51 ~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      ...+.||++|||...++.  .+|+++||+|+++||||+++..    -+.+.++|++|+.||++|+||..|+=|+-.
T Consensus         5 ~~~~c~YE~L~v~~~a~d--~eik~~YRklALq~HPDknpd~----ieeat~~F~~i~aAYeVLSdp~eR~wyd~h   74 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADD--DEIKKNYRKLALQYHPDKNPDR----IEEATQQFQLIQAAYEVLSDPQERAWYDSH   74 (508)
T ss_pred             hhhhHHHHHhcccccCCH--HHHHHHHHHHHHhhCCCCCCcc----HHHHHHHHHHHHHHHHHhcChHhhhhHHHH
Confidence            355789999999998664  9999999999999999996543    345789999999999999999999999753

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.43  E-value=4e-13  Score=127.37  Aligned_cols=66  Identities=26%  Similarity=0.419  Sum_probs=57.9

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL  127 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l  127 (183)
                      .|||++|||+++++  ..+||++||+|++++|||++++.      .+.+.|+.||+||++|+||.+|+.|+...
T Consensus         2 ~DYYeVLGVs~dAS--~eEIKKAYRKLAKKyHPDKn~~~------eAeekFqeINEAYEVLSDP~KRa~YD~fG   67 (871)
T TIGR03835         2 RDYYEVLGIDRDAD--EQEIKKAFRKLAKKYHPDRNKAP------DAASIFAEINEANDVLSNPKKRANYDKYG   67 (871)
T ss_pred             CChhHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCh------hHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence            59999999999765  59999999999999999998752      24568899999999999999999998753

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=4.5e-13  Score=106.64  Aligned_cols=68  Identities=24%  Similarity=0.474  Sum_probs=61.0

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ...+||++|||+++++.  .+|+++||++++++|||++.....    .+.+.|..||+||.+|+||..|+.|+.
T Consensus         4 ~~~~~y~iLgv~~~as~--~eik~ayrkla~~~HPD~~~~~~~----~a~~~f~~i~~Ay~vLsd~~~r~~yd~   71 (237)
T COG2214           4 DLLDYYEILGVPPNASL--EEIKKAYRKLALKYHPDRNPGDPK----VAEEKFKEINEAYEILSDPERRAEYDK   71 (237)
T ss_pred             hhhhHHHHhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchh----HHHHHHHHHHHHHHHhhCHHHHHHhhh
Confidence            34699999999977664  999999999999999999987643    567999999999999999999999987

>PHA03102 Small T antigen; Reviewed

Probab=99.35  E-value=1.3e-12  Score=103.52  Aligned_cols=63  Identities=19%  Similarity=0.177  Sum_probs=54.4

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..++++|||++++--+.++||++||++++++|||+.++         .+.++.||+||++|+|+.+|+.|+.
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~---------~e~~k~in~Ay~~L~d~~~r~~yd~   67 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD---------EEKMKELNTLYKKFRESVKSLRDLD   67 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch---------hHHHHHHHHHHHHHhhHHHhccccc
Confidence            46899999999983345999999999999999999532         2588999999999999999999954

>KOG0721|consensus

Probab=99.33  E-value=3.6e-12  Score=105.42  Aligned_cols=66  Identities=20%  Similarity=0.324  Sum_probs=58.3

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..|+|++|||+++.+.  ++||++||+|..++||||....+     ..++.+..|++||+.|+|+.+|..|+.
T Consensus        98 ~fDPyEILGl~pgas~--~eIKkaYR~LSik~HPDK~~~~~-----~~e~~~~~I~KAY~aLTD~~sreN~ek  163 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASE--KEIKKAYRRLSIKYHPDKQPPEE-----GDEEFFEAIAKAYQALTDKKSRENWEK  163 (230)
T ss_pred             cCCcHHhhCCCCCCCH--HHHHHHHHHhhhhhCCCcCCCcc-----hhHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            4699999999999776  99999999999999999986542     235788999999999999999999965

>KOG0624|consensus

Probab=99.19  E-value=2.3e-11  Score=107.42  Aligned_cols=69  Identities=25%  Similarity=0.480  Sum_probs=64.0

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYL  124 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yl  124 (183)
                      ..+|||.||||.++++-  .+|.++||+++.+||||.|+.  ++|+..|+.+|.-|..|-++|+||.+|.+++
T Consensus       392 ~kRDYYKILGVkRnAsK--qEI~KAYRKlAqkWHPDNFqd--EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFD  460 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNASK--QEITKAYRKLAQKWHPDNFQD--EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFD  460 (504)
T ss_pred             ccchHHHHhhhcccccH--HHHHHHHHHHHHhcCCccccC--HHHHHHHHHhhhhHHHHHHhhcCHHHHhhcc
Confidence            46799999999999875  999999999999999999975  5778889999999999999999999999997

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.18  E-value=3.7e-11  Score=102.85  Aligned_cols=63  Identities=19%  Similarity=0.411  Sum_probs=55.2

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHhcC
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNK--NQEEQAISETYSSYLNKAYSILQN  116 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~--~~~e~~~a~~~s~~In~AY~tL~d  116 (183)
                      ...++|++||++++.+  .++||++||+|++++|||++.+.  ++..++.+.++++.||+||++|+.
T Consensus       198 ~~~~ay~vLgv~~~as--~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        198 TLEDAYKVLGVSESDD--DQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             cHHhHHHHcCCCCCCC--HHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            3469999999999855  59999999999999999998653  466678899999999999999985

>KOG0720|consensus

Probab=99.08  E-value=1.7e-10  Score=104.04  Aligned_cols=70  Identities=24%  Similarity=0.363  Sum_probs=61.8

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcC
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQN  129 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g  129 (183)
                      ...|+|.+|||+.+  +|.++||+.||+++-..||||+..+      .|.+.|..+.-||++|+|+.+|.+|++++..
T Consensus       233 ~~~daYsvlGl~~d--~sd~~lKk~Yrk~A~LVhPDKn~~~------~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k  302 (490)
T KOG0720|consen  233 NILDAYSALGLPSD--CSDADLKKNYRKKAMLVHPDKNMIP------RAEEAFKKLQVAFEVIGDSVKRKEYDLELKK  302 (490)
T ss_pred             cCCCchhhcCCCCC--CCHHHHHHHHHhhceEeCCCccCCh------hHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            36799999999965  6679999999999999999998743      4678999999999999999999999987643

>KOG0722|consensus

Probab=99.05  E-value=1.4e-10  Score=98.36  Aligned_cols=68  Identities=24%  Similarity=0.464  Sum_probs=60.5

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQ  128 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~  128 (183)
                      ..|-|++||+.+..  +..+|.++||+|++++|||++.++..      ...|..|..||++|+|...|+.|+..+.
T Consensus        32 ~enCYdVLgV~Rea--~KseIakAYRqLARrhHPDr~r~~e~------k~~F~~iAtayeilkd~e~rt~ydyald   99 (329)
T KOG0722|consen   32 AENCYDVLGVAREA--NKSEIAKAYRQLARRHHPDRNRDPES------KKLFVKIATAYEILKDNETRTQYDYALD   99 (329)
T ss_pred             chhHHHHhhhhhhc--cHHHHHHHHHHHHHHhCCcccCCchh------hhhhhhhhcccccccchhhHHhHHHHhc
Confidence            46999999999986  56999999999999999999987643      3789999999999999999999987664

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.05  E-value=2.7e-10  Score=86.33  Aligned_cols=58  Identities=19%  Similarity=0.315  Sum_probs=47.1

Q ss_pred             CcCCCCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy8513          47 VQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQ  115 (183)
Q Consensus        47 ~q~~~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~  115 (183)
                      ++......++|++||++++++  .++|+++||+|++++|||+.++         .+.++.||+||++|.
T Consensus        58 f~~~Ms~~eAy~ILGv~~~As--~~eIkkaYRrLa~~~HPDkgGs---------~~~~~kIneAyevL~  115 (116)
T PTZ00100         58 FENPMSKSEAYKILNISPTAS--KERIREAHKQLMLRNHPDNGGS---------TYIASKVNEAKDLLL  115 (116)
T ss_pred             ccCCCCHHHHHHHcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHHh
Confidence            344444569999999999866  5999999999999999998422         246678999999985

>PHA02624 large T antigen; Provisional

Probab=98.97  E-value=5.5e-10  Score=104.71  Aligned_cols=63  Identities=22%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYL  124 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yl  124 (183)
                      ..++|++|||++++--+..+||++||++++++|||+.+.         .+.++.||.||++|+|+.+|+.|.
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd---------eekfk~Ln~AYevL~d~~k~~r~~   72 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD---------EEKMKRLNSLYKKLQEGVKSARQS   72 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc---------HHHHHHHHHHHHHHhcHHHhhhcc
Confidence            458999999999872245999999999999999999532         368899999999999999999994

>KOG0550|consensus

Probab=98.96  E-value=8.2e-10  Score=99.07  Aligned_cols=68  Identities=24%  Similarity=0.417  Sum_probs=62.2

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      +..+||.+||+....+.  .+|+++||++++.+|||++++.    |..++..|..|-+||.+|+||.+|.+|+-
T Consensus       371 kRkd~ykilGi~~~as~--~eikkayrk~AL~~Hpd~~ags----q~eaE~kFkevgeAy~il~d~~kr~r~ds  438 (486)
T KOG0550|consen  371 KRKDWYKILGISRNASD--DEIKKAYRKLALVHHPDKNAGS----QKEAEAKFKEVGEAYTILSDPMKRVRFDS  438 (486)
T ss_pred             hhhhHHHHhhhhhhccc--chhhhHHHHHHHHhCCCcCcch----hHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence            46799999999999887  8999999999999999999875    66678899999999999999999999974

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.95  E-value=1e-09  Score=99.26  Aligned_cols=72  Identities=24%  Similarity=0.358  Sum_probs=67.5

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      ..|+|++||+..+.+.  .+||++||+|.-++||||.+...+.++..-++....|++||..|+|...|..|+..
T Consensus        97 ~fDPyEILGI~~~ts~--rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~y  168 (610)
T COG5407          97 GFDPYEILGIDQDTSE--RDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNY  168 (610)
T ss_pred             CCChHHhhcccCCCcH--HHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence            4699999999998876  99999999999999999999888889999999999999999999999999999875

>KOG0714|consensus

Probab=98.86  E-value=2e-09  Score=89.58  Aligned_cols=68  Identities=25%  Similarity=0.492  Sum_probs=57.0

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      ..+||.+||+++.++.  .+|+++|+.+++++|||++..  .  ...+...+..|++||++|+||.+|..|+..
T Consensus         2 ~~d~~~~l~i~~~as~--~~i~ka~~~~a~~~hpdk~~~--~--~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~   69 (306)
T KOG0714|consen    2 GKDYYKILGIARSASE--EDIKKAYRKLALKYHPDKNPS--P--KEVAEAKFKEIAEAYEVLSDPKKRKIYDQY   69 (306)
T ss_pred             cccHHHHhCccccccH--HHHHHHHHHHHHhhCCCCCCC--c--hhhHHHHHhhhhccccccCCHHHhhhcccc
Confidence            3689999999988776  499999999999999999433  3  334445889999999999999999999753

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)

Probab=98.82  E-value=6.5e-09  Score=72.94  Aligned_cols=44  Identities=43%  Similarity=0.652  Sum_probs=40.5

Q ss_pred             CCHHHHHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513         139 TDQKLLMEILMLNEELDEA---SSEEDLENLQTSIRATIEELTKKVN  182 (183)
Q Consensus       139 ~d~~fLme~me~~E~le~a---~~~~~l~~l~~~~~~~i~~~~~~l~  182 (183)
                      +||+|||++|||||+|+++   ++.++|.+|..+++.+++++.++|.
T Consensus         2 ~d~eFLme~mE~rE~le~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~   48 (78)
T PF07743_consen    2 MDPEFLMEQMELREELEEAQNSDDEAELEELKKEIEERIKELIKELA   48 (78)
T ss_dssp             S-HHHHHHHHHHHHHHHHHCCCTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999   7789999999999999999999875

HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=8.4e-08  Score=82.33  Aligned_cols=80  Identities=15%  Similarity=0.194  Sum_probs=63.9

Q ss_pred             CCChhhhcCccc-cCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCC
Q psy8513          53 QNNYYNVFDMKM-QYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNIS  131 (183)
Q Consensus        53 ~~~~f~llgl~~-~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~  131 (183)
                      ..|+|.+|||+. .+..++..|.++.++.+.+||||+.+..+...   ....|..|.+||+||+|+..|.+|+-.-...+
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~---~d~fFk~iqkA~evL~D~~~R~qyDS~df~ad  118 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKG---CDEFFKLIQKAREVLGDRKLRLQYDSNDFDAD  118 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCC---cHHHHHHHHHHHHHhccHHHHhhccccccccC
Confidence            369999999985 46667789999999999999999985433322   24789999999999999999999987655555


Q ss_pred             cccc
Q psy8513         132 IEED  135 (183)
Q Consensus       132 ~~~~  135 (183)
                      +...
T Consensus       119 vppp  122 (379)
T COG5269         119 VPPP  122 (379)
T ss_pred             CCCc
Confidence            5543

>KOG1150|consensus

Probab=98.57  E-value=1.2e-07  Score=78.16  Aligned_cols=64  Identities=23%  Similarity=0.380  Sum_probs=55.0

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGL  122 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~  122 (183)
                      +.|+|++|.+.|..++  ++|+++||+|+...|||++...    ++-|...|.-|.+||+.|-|+..|..
T Consensus        52 nLNpfeVLqIdpev~~--edikkryRklSilVHPDKN~Dd----~~rAqkAFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTD--EDIKKRYRKLSILVHPDKNPDD----AERAQKAFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             ccChHHHHhcCCCCCH--HHHHHHHHhhheeecCCCCccc----HHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            5799999999998665  9999999999999999998764    33456889999999999999995543

>KOG1789|consensus

Probab=97.81  E-value=3e-05  Score=76.77  Aligned_cols=53  Identities=21%  Similarity=0.364  Sum_probs=44.1

Q ss_pred             ChhhhcCcccc--CCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy8513          55 NYYNVFDMKMQ--YLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQ  115 (183)
Q Consensus        55 ~~f~llgl~~~--~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~  115 (183)
                      +-+++|.++-+  -..|+..|+++|++|+.+|||||+.-        ..+.|-.||+||+.|.
T Consensus      1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE--------GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE--------GREMFERVNKAYELLS 1336 (2235)
T ss_pred             HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch--------HHHHHHHHHHHHHHHH
Confidence            66888888743  34456999999999999999999853        2588999999999998

>KOG0568|consensus

Probab=97.78  E-value=4.3e-05  Score=64.66  Aligned_cols=55  Identities=18%  Similarity=0.345  Sum_probs=46.3

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HhcC
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYS-ILQN  116 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~-tL~d  116 (183)
                      +.||.+||+..+.+.  .+++.+|+.|++++|||.....      ...+.|.+|.+||+ +|+.
T Consensus        47 ~e~fril~v~e~~~a--devr~af~~lakq~hpdsgs~~------adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADA--DEVREAFHDLAKQVHPDSGSEE------ADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCch--hHHHHHHHHHHHHcCCCCCCcc------ccHHHHHHHHHHHHHHHHH
Confidence            589999999999765  8999999999999999997553      23478999999998 6654

>KOG0723|consensus

Probab=97.58  E-value=0.00015  Score=54.28  Aligned_cols=54  Identities=13%  Similarity=0.268  Sum_probs=44.5

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQN  116 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~d  116 (183)
                      ....--.||||.++  +|.+.||.++|+....-|||+-+++         -..+.||+|+.+|..
T Consensus        54 sr~EA~lIL~v~~s--~~k~KikeaHrriM~~NHPD~GGSP---------YlAsKINEAKdlLe~  107 (112)
T KOG0723|consen   54 SRREAALILGVTPS--LDKDKIKEAHRRIMLANHPDRGGSP---------YLASKINEAKDLLEG  107 (112)
T ss_pred             chHHHHHHhCCCcc--ccHHHHHHHHHHHHHcCCCcCCCCH---------HHHHHHHHHHHHHhc
Confidence            33455578999976  6679999999999999999998764         456889999999864

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=97.02  E-value=0.00035  Score=39.29  Aligned_cols=22  Identities=27%  Similarity=0.763  Sum_probs=20.2

Q ss_pred             CCCCCCCCCCCCCcccCCCCCC
Q psy8513          25 LKCWNCLKSLSGKSLFCQHCSS   46 (183)
Q Consensus        25 ~~Cw~C~~~~~~~~~fC~~C~~   46 (183)
                      ..||+||+.+....-||++||+
T Consensus         3 ~~Cp~Cg~~~~~~~~fC~~CG~   24 (26)
T PF13248_consen    3 MFCPNCGAEIDPDAKFCPNCGA   24 (26)
T ss_pred             CCCcccCCcCCcccccChhhCC
Confidence            4799999998889999999997

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=96.74  E-value=0.00075  Score=37.04  Aligned_cols=21  Identities=29%  Similarity=0.803  Sum_probs=19.4

Q ss_pred             CCCCCCCCCCCCcccCCCCCC
Q psy8513          26 KCWNCLKSLSGKSLFCQHCSS   46 (183)
Q Consensus        26 ~Cw~C~~~~~~~~~fC~~C~~   46 (183)
                      .|++||+.+....-||+.||+
T Consensus         1 ~Cp~CG~~~~~~~~fC~~CG~   21 (23)
T PF13240_consen    1 YCPNCGAEIEDDAKFCPNCGT   21 (23)
T ss_pred             CCcccCCCCCCcCcchhhhCC
Confidence            399999999999999999996

>KOG0431|consensus

Probab=96.73  E-value=0.0027  Score=58.39  Aligned_cols=48  Identities=25%  Similarity=0.435  Sum_probs=40.7

Q ss_pred             CCHHHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHhc
Q psy8513          68 INNADLSKKFKHLQSQLHPDKFSNK--NQEEQAISETYSSYLNKAYSILQ  115 (183)
Q Consensus        68 iD~~~Lk~~Yr~l~~~~HPDk~~~~--~~~e~~~a~~~s~~In~AY~tL~  115 (183)
                      |...++|++||+..+.+||||.++.  +...+-++++.|..+++||....
T Consensus       400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            7789999999999999999999766  45566678889999999987654

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.0055  Score=49.20  Aligned_cols=59  Identities=20%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHh
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKN--QEEQAISETYSSYLNKAYSIL  114 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~--~~e~~~a~~~s~~In~AY~tL  114 (183)
                      .+.|.+||++++.+  ..+|+++|+++....|||+-...+  .+--+.+.+..+.|++||..+
T Consensus       113 ~~~l~~l~~~~~~~--~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKAD--QDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhh--HHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            58899999998855  499999999999999999986554  556677889999999999754

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=95.42  E-value=0.011  Score=33.36  Aligned_cols=22  Identities=27%  Similarity=0.702  Sum_probs=20.4

Q ss_pred             CCCCCCCCCCCCcccCCCCCCC
Q psy8513          26 KCWNCLKSLSGKSLFCQHCSSV   47 (183)
Q Consensus        26 ~Cw~C~~~~~~~~~fC~~C~~~   47 (183)
                      .|+.|++.++...-+|+.||..
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~   23 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYD   23 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCC
Confidence            6999999999999999999985

Several members are annotated as putative helicases.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.73  E-value=0.025  Score=42.41  Aligned_cols=28  Identities=21%  Similarity=0.612  Sum_probs=24.2

Q ss_pred             CCCCCCCCCC---CCCCcccCCCCCCCcCCC
Q psy8513          24 ELKCWNCLKS---LSGKSLFCQHCSSVQKPD   51 (183)
Q Consensus        24 ~~~Cw~C~~~---~~~~~~fC~~C~~~q~~~   51 (183)
                      +..|++||+.   ++..+.+||.||..+++.
T Consensus         9 KR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    9 KRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence            5689999995   566889999999999986

The function of members of this family is unknown.

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=93.98  E-value=0.17  Score=38.17  Aligned_cols=48  Identities=25%  Similarity=0.394  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCch
Q psy8513          70 NADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPL  118 (183)
Q Consensus        70 ~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~  118 (183)
                      ..+++.+.|.+-++.|||.|+.. +.+++.-++-.+.+|.-.+.|..+.
T Consensus         8 ~~~l~~aLr~Fy~~VHPDlF~~~-P~~k~~Ne~SLk~Ln~~Ld~l~~~~   55 (112)
T PF14687_consen    8 SPDLRSALRPFYFAVHPDLFGQH-PEEKQVNEESLKLLNSYLDSLKKRK   55 (112)
T ss_pred             hHHHHHHHHHHHHHhCCcccccC-hHHHHhhHHHHHHHHHHHHHHhccC
Confidence            37899999999999999999885 4588888888888888888888765

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=92.60  E-value=0.096  Score=40.42  Aligned_cols=29  Identities=14%  Similarity=0.123  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCC---CCCCcccCCCCCCCcCCC
Q psy8513          23 LELKCWNCLKS---LSGKSLFCQHCSSVQKPD   51 (183)
Q Consensus        23 ~~~~Cw~C~~~---~~~~~~fC~~C~~~q~~~   51 (183)
                      .+..|++||+.   ++.....||.||..+++.
T Consensus         8 tKr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~   39 (129)
T TIGR02300         8 TKRICPNTGSKFYDLNRRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccccCCCcCccccccCCCCccCCCcCCccCcc
Confidence            35689999995   556899999999999875

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=92.58  E-value=0.031  Score=37.59  Aligned_cols=23  Identities=26%  Similarity=0.651  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCCCCCcccCC-CCCC
Q psy8513          24 ELKCWNCLKSLSGKSLFCQ-HCSS   46 (183)
Q Consensus        24 ~~~Cw~C~~~~~~~~~fC~-~C~~   46 (183)
                      +..|.+||++++.+..||+ .|+.
T Consensus         3 HkHC~~CG~~Ip~~~~fCS~~C~~   26 (59)
T PF09889_consen    3 HKHCPVCGKPIPPDESFCSPKCRE   26 (59)
T ss_pred             CCcCCcCCCcCCcchhhhCHHHHH
Confidence            5689999999999999995 7764

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=92.53  E-value=0.083  Score=29.30  Aligned_cols=20  Identities=20%  Similarity=0.665  Sum_probs=15.0

Q ss_pred             CCCCCCCCCC----CcccCCCCCC
Q psy8513          27 CWNCLKSLSG----KSLFCQHCSS   46 (183)
Q Consensus        27 Cw~C~~~~~~----~~~fC~~C~~   46 (183)
                      |-+|+..+..    ..|.||+||.
T Consensus         1 C~sC~~~i~~r~~~v~f~CPnCG~   24 (24)
T PF07754_consen    1 CTSCGRPIAPREQAVPFPCPNCGF   24 (24)
T ss_pred             CccCCCcccCcccCceEeCCCCCC
Confidence            6788887654    6788999973

It is likely to bind zinc via its four well-conserved cysteine residues.

>PRK00420 hypothetical protein; Validated

Probab=91.32  E-value=0.13  Score=38.86  Aligned_cols=28  Identities=21%  Similarity=0.252  Sum_probs=22.2

Q ss_pred             CCCCCCCCCCCCC---CCcccCCCCCCCcCC
Q psy8513          23 LELKCWNCLKSLS---GKSLFCQHCSSVQKP   50 (183)
Q Consensus        23 ~~~~Cw~C~~~~~---~~~~fC~~C~~~q~~   50 (183)
                      ....|+.||.++.   ....|||+|+.+--.
T Consensus        22 l~~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~~v   52 (112)
T PRK00420         22 LSKHCPVCGLPLFELKDGEVVCPVHGKVYIV   52 (112)
T ss_pred             ccCCCCCCCCcceecCCCceECCCCCCeeee
Confidence            3568999999875   389999999985443

>PF12773 DZR: Double zinc ribbon

Probab=91.02  E-value=0.13  Score=32.50  Aligned_cols=28  Identities=21%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             CCCCCCCCCCCCC--C-CcccCCCCCCCcCC
Q psy8513          23 LELKCWNCLKSLS--G-KSLFCQHCSSVQKP   50 (183)
Q Consensus        23 ~~~~Cw~C~~~~~--~-~~~fC~~C~~~q~~   50 (183)
                      +...|++||.++.  . ...+|++|++..++
T Consensus        11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~   41 (50)
T PF12773_consen   11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPP   41 (50)
T ss_pred             cccCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence            4557888888776  2 56788888886443

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=90.69  E-value=0.052  Score=32.53  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCC--------CcccCCCCCCCc
Q psy8513          26 KCWNCLKSLSG--------KSLFCQHCSSVQ   48 (183)
Q Consensus        26 ~Cw~C~~~~~~--------~~~fC~~C~~~q   48 (183)
                      -|+.||.++..        ..++|++|+.|.
T Consensus         2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~Ih   32 (34)
T PF14803_consen    2 FCPQCGGPLERRIPEGDDRERLVCPACGFIH   32 (34)
T ss_dssp             B-TTT--B-EEE--TT-SS-EEEETTTTEEE
T ss_pred             ccccccChhhhhcCCCCCccceECCCCCCEE
Confidence            48999997642        678999999863

>PF12773 DZR: Double zinc ribbon

Probab=90.10  E-value=0.26  Score=31.13  Aligned_cols=23  Identities=26%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             CCCCCCCCCCCCCCCcccCCCCC
Q psy8513          23 LELKCWNCLKSLSGKSLFCQHCS   45 (183)
Q Consensus        23 ~~~~Cw~C~~~~~~~~~fC~~C~   45 (183)
                      ....|.+|+..+.....||+.||
T Consensus        28 ~~~~C~~Cg~~~~~~~~fC~~CG   50 (50)
T PF12773_consen   28 SKKICPNCGAENPPNAKFCPNCG   50 (50)
T ss_pred             CCCCCcCCcCCCcCCcCccCccc
Confidence            34579999999988999999996

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=88.97  E-value=0.19  Score=38.93  Aligned_cols=24  Identities=29%  Similarity=0.623  Sum_probs=20.2

Q ss_pred             CCCCCCCCCCCCCC--CcccCCCCCC
Q psy8513          23 LELKCWNCLKSLSG--KSLFCQHCSS   46 (183)
Q Consensus        23 ~~~~Cw~C~~~~~~--~~~fC~~C~~   46 (183)
                      ...+|+.||.|+--  ...|||.|++
T Consensus        27 L~~hCp~Cg~PLF~KdG~v~CPvC~~   52 (131)
T COG1645          27 LAKHCPKCGTPLFRKDGEVFCPVCGY   52 (131)
T ss_pred             HHhhCcccCCcceeeCCeEECCCCCc
Confidence            34589999999753  8899999996

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=88.32  E-value=0.34  Score=32.60  Aligned_cols=24  Identities=25%  Similarity=0.656  Sum_probs=17.3

Q ss_pred             CCCCCCCCCCCCC----CcccCCCCCCC
Q psy8513          24 ELKCWNCLKSLSG----KSLFCQHCSSV   47 (183)
Q Consensus        24 ~~~Cw~C~~~~~~----~~~fC~~C~~~   47 (183)
                      ...|.+|+..+..    ..|.||+|+..
T Consensus         7 ~~~CtSCg~~i~~~~~~~~F~CPnCG~~   34 (59)
T PRK14890          7 PPKCTSCGIEIAPREKAVKFLCPNCGEV   34 (59)
T ss_pred             CccccCCCCcccCCCccCEeeCCCCCCe
Confidence            4468888887653    56888888874

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=88.28  E-value=0.34  Score=46.64  Aligned_cols=24  Identities=17%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             CCCCCCCCCCCCCcccCCCCCCCc
Q psy8513          25 LKCWNCLKSLSGKSLFCQHCSSVQ   48 (183)
Q Consensus        25 ~~Cw~C~~~~~~~~~fC~~C~~~q   48 (183)
                      ..|++||+.++...-||+.||.-.
T Consensus        28 ~~Cp~CG~~~~~~~~fC~~CG~~~   51 (645)
T PRK14559         28 KPCPQCGTEVPVDEAHCPNCGAET   51 (645)
T ss_pred             CcCCCCCCCCCcccccccccCCcc
Confidence            579999999988999999999743

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=87.81  E-value=0.2  Score=37.89  Aligned_cols=35  Identities=17%  Similarity=0.356  Sum_probs=26.6

Q ss_pred             CCCCCCCCCCCcccCCCCCCCcCCCCCCChhhhcC
Q psy8513          27 CWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFD   61 (183)
Q Consensus        27 Cw~C~~~~~~~~~fC~~C~~~q~~~~~~~~f~llg   61 (183)
                      ||.||.++....+.|++|+..-.-.=..++|..|.
T Consensus         1 CPvCg~~l~vt~l~C~~C~t~i~G~F~l~~~~~L~   35 (113)
T PF09862_consen    1 CPVCGGELVVTRLKCPSCGTEIEGEFELPWFARLS   35 (113)
T ss_pred             CCCCCCceEEEEEEcCCCCCEEEeeeccchhhcCC
Confidence            99999998889999999999665443445555553

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=87.70  E-value=1.7  Score=33.58  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=37.4

Q ss_pred             ChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCch
Q psy8513          55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPL  118 (183)
Q Consensus        55 ~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~  118 (183)
                      .-..||||++  .++.++|.++|..|-..-+|++.++         .-.-+.|..|.+.|...+
T Consensus        59 EA~~ILnv~~--~~~~eeI~k~y~~Lf~~Nd~~kGGS---------fYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   59 EARQILNVKE--ELSREEIQKRYKHLFKANDPSKGGS---------FYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHT--G----SHHHHHHHHHHHHHHT-CCCTS----------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCC--ccCHHHHHHHHHHHHhccCCCcCCC---------HHHHHHHHHHHHHHHHHH
Confidence            4568999998  4667999999999999999998653         234467888888877544

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]

Probab=86.44  E-value=0.34  Score=39.39  Aligned_cols=24  Identities=29%  Similarity=0.750  Sum_probs=20.8

Q ss_pred             CCCCCCCCCCCCCCcccCCCCCCC
Q psy8513          24 ELKCWNCLKSLSGKSLFCQHCSSV   47 (183)
Q Consensus        24 ~~~Cw~C~~~~~~~~~fC~~C~~~   47 (183)
                      ...||.|++..+.+.-||+.||+-
T Consensus       139 ~~rC~GC~~~f~~~~~~Cp~CG~~  162 (177)
T COG1439         139 RLRCHGCKRIFPEPKDFCPICGSP  162 (177)
T ss_pred             eEEEecCceecCCCCCcCCCCCCc
Confidence            357999999888889999999983

>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3

Probab=83.78  E-value=4.3  Score=28.81  Aligned_cols=49  Identities=24%  Similarity=0.299  Sum_probs=36.4

Q ss_pred             HHHHHHHHHh-cCchhHHHHHHHhcCCCcccc-CccCCHHHHHHHHHHhHH
Q psy8513         105 SYLNKAYSIL-QNPLKRGLYLLSLQNISIEED-SKGTDQKLLMEILMLNEE  153 (183)
Q Consensus       105 ~~In~AY~tL-~dp~~Ra~Yll~l~g~~~~~~-~~~~d~~fLme~me~~E~  153 (183)
                      ...-.+|+.+ ++|..|+.|+..+....+..= ...+++++|.++++.=..
T Consensus         8 ~eF~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~   58 (94)
T PF13877_consen    8 YEFERDWRRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNE   58 (94)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            3456777888 889999999988765544432 357899999999987655

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=83.60  E-value=0.79  Score=28.96  Aligned_cols=28  Identities=18%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             CCCCCCCCCCC------CcccCCCCCCCcCCCCC
Q psy8513          26 KCWNCLKSLSG------KSLFCQHCSSVQKPDPQ   53 (183)
Q Consensus        26 ~Cw~C~~~~~~------~~~fC~~C~~~q~~~~~   53 (183)
                      .|+.||..+..      ..+.|+.|+...+..+.
T Consensus         2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~~~~~~   35 (52)
T smart00661        2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEEPIEQK   35 (52)
T ss_pred             CCCCCCCccccccCCCCCEEECCcCCCeEECCCc
Confidence            59999996543      26889999998876543

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=82.21  E-value=0.83  Score=44.03  Aligned_cols=28  Identities=25%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             CCCCCCCCCCCCCCCcccCCCCCCCcCCCC
Q psy8513          23 LELKCWNCLKSLSGKSLFCQHCSSVQKPDP   52 (183)
Q Consensus        23 ~~~~Cw~C~~~~~~~~~fC~~C~~~q~~~~   52 (183)
                      +...|.+||.++.  .-+|+.||+.-|++.
T Consensus        14 ~akFC~~CG~~l~--~~~Cp~CG~~~~~~~   41 (645)
T PRK14559         14 NNRFCQKCGTSLT--HKPCPQCGTEVPVDE   41 (645)
T ss_pred             CCccccccCCCCC--CCcCCCCCCCCCccc
Confidence            4567899988874  357999998877654

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=82.05  E-value=0.73  Score=31.06  Aligned_cols=23  Identities=17%  Similarity=0.550  Sum_probs=13.0

Q ss_pred             CCCCCCCCCCCCC----CcccCCCCCC
Q psy8513          24 ELKCWNCLKSLSG----KSLFCQHCSS   46 (183)
Q Consensus        24 ~~~Cw~C~~~~~~----~~~fC~~C~~   46 (183)
                      +..|.+||..+..    ..|.||+||.
T Consensus         9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe   35 (61)
T COG2888           9 PPVCTSCGREIAPGETAVKFPCPNCGE   35 (61)
T ss_pred             CceeccCCCEeccCCceeEeeCCCCCc
Confidence            3456666665522    5566666663

>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]

Probab=81.81  E-value=0.73  Score=35.01  Aligned_cols=26  Identities=23%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             CCCCCCCCCCCCC--CcccCCCCCCCcC
Q psy8513          24 ELKCWNCLKSLSG--KSLFCQHCSSVQK   49 (183)
Q Consensus        24 ~~~Cw~C~~~~~~--~~~fC~~C~~~q~   49 (183)
                      ...||.|+.++..  ..+.||.|++.-.
T Consensus        70 ~~~C~~C~~~~~~e~~~~~CP~C~s~~~   97 (115)
T COG0375          70 ECWCLDCGQEVELEELDYRCPKCGSINL   97 (115)
T ss_pred             EEEeccCCCeecchhheeECCCCCCCce
Confidence            4479999997765  6677999997543

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=81.16  E-value=0.77  Score=28.75  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=17.5

Q ss_pred             CCCCCCCCCCCC----CcccCCCCCCC
Q psy8513          25 LKCWNCLKSLSG----KSLFCQHCSSV   47 (183)
Q Consensus        25 ~~Cw~C~~~~~~----~~~fC~~C~~~   47 (183)
                      ..|.+||+.+..    ..+.||.||.-
T Consensus         4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~   30 (46)
T PRK00398          4 YKCARCGREVELDEYGTGVRCPYCGYR   30 (46)
T ss_pred             EECCCCCCEEEECCCCCceECCCCCCe
Confidence            379999996532    37899999973

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.35  E-value=0.87  Score=28.12  Aligned_cols=24  Identities=33%  Similarity=0.635  Sum_probs=17.7

Q ss_pred             CCCCCCCCC-----CCCcccCCCCCCCcC
Q psy8513          26 KCWNCLKSL-----SGKSLFCQHCSSVQK   49 (183)
Q Consensus        26 ~Cw~C~~~~-----~~~~~fC~~C~~~q~   49 (183)
                      .|++|+...     ....++|+.||.+..
T Consensus         2 ~Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl~   30 (43)
T PF08271_consen    2 KCPNCGSKEIVFDPERGELVCPNCGLVLE   30 (43)
T ss_dssp             SBTTTSSSEEEEETTTTEEEETTT-BBEE
T ss_pred             CCcCCcCCceEEcCCCCeEECCCCCCEee
Confidence            599999953     137889999998765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
3bvo_A	207	Crystal Structure Of Human Co-Chaperone Protein Hsc		9e-21
4it5_A	174	Chaperone Hscb From Vibrio Cholerae Length = 174		1e-11
1fpo_A	171	Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli Le		2e-11
3uo3_A	181	Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-		5e-05
3uo2_A	175	Jac1 Co-Chaperone From Saccharomyces Cerevisiae Len		6e-05

>pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb Length = 207

Iteration: 1
 Score = 96.3 bits (238), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 26  KCWNCLKSLS-GKS--LFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQS 82
           +CWNC      G+    FC  C ++Q PDP  +Y+++ D    + ++ A L  +++ LQ 
Sbjct: 12  RCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLXDCNRSFRVDTAKLQHRYQQLQR 71
Query: 83  QLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEE 134
            +HPD FS ++Q E+  SE +S+ +N AY  L  PL RGLYLL L  I I E
Sbjct: 72  LVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPE 123

>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae Length = 174

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 50/76 (65%)
Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           NY+ +F + +Q+ ++ + LS +F+ LQ + HPD F+  ++ ++  +   ++ +N AY  L
Sbjct: 5   NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTL 64
Query: 115 QNPLKRGLYLLSLQNI 130
           ++PL+R  YLLSLQ I
Sbjct: 65  KDPLRRAEYLLSLQGI 80

>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli Length = 171

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  +Y ++   LS +F+ LQ Q HPDKF++ +Q EQ  +   S+ +N+A+  L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 115 QNPLKRGLYLLSLQNISI 132
           ++PL R  YLLSL    +
Sbjct: 62  RHPLMRAEYLLSLHGFDL 79

>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182 Clone Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 66  YLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125
           + I+ + L K+++ LQ+Q HPD     +++        SS LN+AY  L++PL+R  Y+L
Sbjct: 28  WTIDQSRLRKEYRQLQAQHHPDMAQQGSEQ--------SSTLNQAYHTLKDPLRRSQYML 79
Query: 126 S-LQNISIEED 135
             L+NI + ++
Sbjct: 80  KLLRNIDLTQE 90

>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae Length = 175

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 66  YLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125
           + I+ + L K+++ LQ+Q HPD     +++        SS LN+AY  L++PL+R  Y+L
Sbjct: 20  WTIDQSRLRKEYRQLQAQHHPDMAQQGSEQ--------SSTLNQAYHTLKDPLRRSQYML 71
Query: 126 S-LQNISIEED 135
             L+NI + ++
Sbjct: 72  KLLRNIDLTQE 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	3e-38
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-30
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	3e-28
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-25
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	5e-06
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	6e-06
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score =  129 bits (325), Expect = 3e-38
 Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 4/171 (2%)

Query: 17  TETAKSLELKCWNC---LKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADL 73
              A S   +CWNC            FC  C ++Q PDP  +Y+++ D    + ++ A L
Sbjct: 3   ASQAGSNYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKL 62

Query: 74  SKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIE 133
             +++ LQ  +HPD FS ++Q E+  SE +S+ +N AY  L  PL RGLYLL L  I I 
Sbjct: 63  QHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIP 122

Query: 134 EDSKGT-DQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
           E +    D++ L+EI+ +NE+L EA SE  ++ +++ ++A  +E T  V++
Sbjct: 123 ERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSS 173

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score =  102 bits (256), Expect = 3e-28
 Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 4/130 (3%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  +Y ++   LS +F+ LQ Q HPDKF++ +Q EQ  +   S+ +N+A+  L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 115 QNPLKRGLYLLSLQNISIE-EDSKGTDQKLLMEILMLNEELDEASSEED---LENLQTSI 170
           ++PL R  YLLSL    +  E     D   LME L L EELDE    +D   LE+    +
Sbjct: 62  RHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRV 121

Query: 171 RATIEELTKK 180
           +   +   + 
Sbjct: 122 KKMFDTRHQL 131

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 95.0 bits (236), Expect = 3e-25
 Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 20/151 (13%)

Query: 44  CSSVQKPDPQNNYYNVFDMKM-----QYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQA 98
            + VQ+      +Y +F          + I+ + L K+++ LQ+Q HPD     +++   
Sbjct: 2   NALVQRRFTST-FYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQ--- 57

Query: 99  ISETYSSYLNKAYSILQNPLKRGLYLLSLQ---NISIEEDSKGT---DQKLLMEILMLNE 152
                SS LN+AY  L++PL+R  Y+L L    +++ E+ S      D +LL+++L +++
Sbjct: 58  -----SSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHD 112

Query: 153 ELDEASSEEDLENLQTSIRATIEELTKKVNN 183
           EL +   E  ++ L+   +  I+++  ++  
Sbjct: 113 ELSQMDDEAGVKLLEKQNKERIQDIEAQLGQ 143

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
              ++  ++     N   + K +     + HPD    K  +E+ + +     +N  Y  +
Sbjct: 12  QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD----KGGDEEKMKK-----MNTLYKKM 62

Query: 115 QNPLKRGLY 123
           ++ +K    
Sbjct: 63  EDGVKYAHQ 71

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
              ++  ++     N   + K +     + HPD    K  +E+ + +     +N  Y  +
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD----KGGDEEKMKK-----MNTLYKKM 59

Query: 115 QNPLKRGLY 123
           ++ +K    
Sbjct: 60  EDGVKYAHQ 68

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 64  MQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
           M  L+    + K ++     +HPDK + +  E+ A  +     LN A+S  +N  ++ LY
Sbjct: 125 MADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYA--KMIFMELNDAWSEFENQGQKPLY 182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 38/150 (25%)

Query: 24  ELKCWNCLKSLSGKSLF----CQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKH 79
              C +       KS+       H   +   D  +    +F      L    ++ +KF  
Sbjct: 32  NFDCKDVQDMP--KSILSKEEIDHI--IMSKDAVSGTLRLFWT---LLSKQEEMVQKF-- 82

Query: 80  LQSQLHPD------KFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIE 133
           ++  L  +          + ++   ++  Y    ++ Y+  Q   K         N+S  
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--------NVSRL 134

Query: 134 EDSKGTDQKLLMEILMLNEELDEASSEEDL 163
           +             L L + L E    +++
Sbjct: 135 Q-----------PYLKLRQALLELRPAKNV 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 29/189 (15%), Positives = 58/189 (30%), Gaps = 42/189 (22%)

Query: 23  LELKCWNCLKSL-------------SGKS-LFCQHCSS--VQKPDPQNNYYNVFDMKMQY 66
           L+L+    L  L             SGK+ +    C S  VQ        + +F + ++ 
Sbjct: 138 LKLR--QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ----CKMDFKIFWLNLKN 191

Query: 67  LINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS 126
             +   + +  + L  Q+ P+  S  +         +S        +   P +    LL 
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLV 249

Query: 127 LQNISIEEDSKG----------TDQKLLMEILM--------LNEELDEASSEEDLENLQT 168
           L N+   +              T  K + + L         L+      + +E    L  
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 169 SIRATIEEL 177
            +    ++L
Sbjct: 310 YLDCRPQDL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	100.0
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	100.0
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	100.0
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.97
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.88
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.8
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.75
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.74
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.74
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.74
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.73
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.72
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.72
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.72
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.71
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.71
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.71
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.7
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.7
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.68
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.65
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.62
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.61
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.6
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.59
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.57
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.54
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.53
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.49
2guz_A	71	Mitochondrial import inner membrane translocase su	99.46
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.46
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.37
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.3
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.8
2guz_B	65	Mitochondrial import inner membrane translocase su	98.48
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	81.64
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	81.5
4esj_A	257	Type-2 restriction enzyme DPNI; restriction endonu	81.25
2lbz_A	31	Thuricin17, thurincin H; helical loops, crosslinke	80.52

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-47  Score=312.27  Aligned_cols=163  Identities=37%  Similarity=0.703  Sum_probs=150.1

Q ss_pred             hccCCCCCCCCCCC---CCCCcccCCCCCCCcCCCCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHH
Q psy8513          20 AKSLELKCWNCLKS---LSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEE   96 (183)
Q Consensus        20 ~~~~~~~Cw~C~~~---~~~~~~fC~~C~~~q~~~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e   96 (183)
                      +++....||||+.+   +....+||++|+++||+....|||++|||+++|++|..+|+++||+|++++|||++++.++.+
T Consensus         6 ~~~~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e   85 (207)
T 3bvo_A            6 AGSNYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTE   85 (207)
T ss_dssp             -----CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHH
T ss_pred             cCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHH
Confidence            34467799999997   556999999999999999899999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCCcccc-CccCCHHHHHHHHHHhHHHhcCCCHHHHHHHHHHHHHHHH
Q psy8513          97 QAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEED-SKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIE  175 (183)
Q Consensus        97 ~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~~~-~~~~d~~fLme~me~~E~le~a~~~~~l~~l~~~~~~~i~  175 (183)
                      ++.+.++|+.||+||+||+||.+|+.|++.++|+++.++ ++.+|++|||++|||||+|+++.+.++|.+|..+++.+++
T Consensus        86 ~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~~~l~~l~~~~~~~~~  165 (207)
T 3bvo_A           86 KDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQK  165 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998876 7889999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy8513         176 ELTKKVN  182 (183)
Q Consensus       176 ~~~~~l~  182 (183)
                      ++.++|.
T Consensus       166 ~~~~~l~  172 (207)
T 3bvo_A          166 EFTDNVS  172 (207)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987764

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=100.00  E-value=3.3e-34  Score=228.99  Aligned_cols=129  Identities=33%  Similarity=0.561  Sum_probs=120.8

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCCcc
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIE  133 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~  133 (183)
                      +|||++|||++++.+|..+|+++||+|++++|||++++.++.+++.+.++|+.||+||+||+||.+|+.|++.+.|+++.
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~   80 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLA   80 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCcc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cc-CccCCHHHHHHHHHHhHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513         134 ED-SKGTDQKLLMEILMLNEELDEAS---SEEDLENLQTSIRATIEELTKKVN  182 (183)
Q Consensus       134 ~~-~~~~d~~fLme~me~~E~le~a~---~~~~l~~l~~~~~~~i~~~~~~l~  182 (183)
                      .+ .+.+|++|||++|||||+|+++.   +.+.|..|..+++++++++.++|.
T Consensus        81 ~e~~~~~d~~fLme~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~  133 (171)
T 1fpo_A           81 SEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMV  133 (171)
T ss_dssp             CSSSCCSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76 67899999999999999999985   456799999999999999998764

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.97  E-value=4.6e-32  Score=218.43  Aligned_cols=124  Identities=28%  Similarity=0.587  Sum_probs=111.9

Q ss_pred             CCCCCChhhhcC------ccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q psy8513          50 PDPQNNYYNVFD------MKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY  123 (183)
Q Consensus        50 ~~~~~~~f~llg------l~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Y  123 (183)
                      .....|||++||      +++ |++|..+|+++||+|++++|||++++        +.+.|+.||+||+||+||.+|+.|
T Consensus         7 ~~~~~d~y~ll~~~~p~~~~~-~~a~~~eIk~aYr~la~~~HPDk~~~--------a~~~f~~i~~AY~vL~dp~~R~~Y   77 (181)
T 3uo3_A            7 RRFTSTFYELFPKTFPKKLPI-WTIDQSRLRKEYRQLQAQHHPDMAQQ--------GSEQSSTLNQAYHTLKDPLRRSQY   77 (181)
T ss_dssp             CCCSCCTGGGCTTTCTTCSCC-SCCCHHHHHHHHHHHHHTCCTTSCCS--------CSSGGGSHHHHHHHHHSHHHHHHH
T ss_pred             CCCCCCHHHHhccccccCCCC-CCCCHHHHHHHHHHHHHHhCcCCCcc--------HHHHHHHHHHHHHHHcChHHHHHH
Confidence            345579999995      554 88999999999999999999999976        357899999999999999999999


Q ss_pred             HHHh-cCCCcccc-----CccCCHHHHHHHHHHhHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513         124 LLSL-QNISIEED-----SKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVN  182 (183)
Q Consensus       124 ll~l-~g~~~~~~-----~~~~d~~fLme~me~~E~le~a~~~~~l~~l~~~~~~~i~~~~~~l~  182 (183)
                      ++.| +|+++.++     .+.+|++|||++|||||+|+++.+.++|++|..+++++++++.++|.
T Consensus        78 d~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~  142 (181)
T 3uo3_A           78 MLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLG  142 (181)
T ss_dssp             HHHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCccccccccccccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 99998764     35789999999999999999999999999999999999999988874

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.88  E-value=3.7e-24  Score=167.42  Aligned_cols=100  Identities=21%  Similarity=0.267  Sum_probs=87.8

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCC
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKN-QEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNI  130 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~-~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~  130 (183)
                      ...|||++|||+++++  .++|+++||+|++++|||+++..+ +.+++.+.+.|+.||+||++|+||.+|+.|++.+.|.
T Consensus         8 ~~~~~y~iLgv~~~a~--~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~   85 (155)
T 2l6l_A            8 PKKDWYSILGADPSAN--ISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED   85 (155)
T ss_dssp             CCSHHHHHHTCCTTCC--HHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred             CCCChhHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence            4579999999999977  599999999999999999998764 4788889999999999999999999999999998876


Q ss_pred             CccccCccCCHHHHHHHHHHhHHH
Q psy8513         131 SIEEDSKGTDQKLLMEILMLNEEL  154 (183)
Q Consensus       131 ~~~~~~~~~d~~fLme~me~~E~l  154 (183)
                      .+.. .+..+++|+|++|+++|+.
T Consensus        86 ~~~~-~~~~~~~~~~~~m~~~e~~  108 (155)
T 2l6l_A           86 DLRN-VGPVDAQVYLEEMSWNEGD  108 (155)
T ss_dssp             HHHT-TCSSSEEEETTTSEEETTT
T ss_pred             hccc-cccccceeeHHHhccccCC
Confidence            6554 3567889999999998754

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.80  E-value=2e-19  Score=129.26  Aligned_cols=78  Identities=22%  Similarity=0.253  Sum_probs=69.5

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCC
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSN-KNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNI  130 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~-~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~  130 (183)
                      ...|||+||||+++++  ..+|+++||+|++++|||++.. .++.++..+.+.|..|++||++|+||.+|+.|+..+.|.
T Consensus        14 ~~~~~y~iLgv~~~as--~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   91 (94)
T 1wjz_A           14 LKKDWYSILGADPSAN--MSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP   91 (94)
T ss_dssp             SCSCHHHHTTCCTTCC--HHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred             CCCChHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence            4579999999998865  5999999999999999999874 356677888999999999999999999999999998875


Q ss_pred             C
Q psy8513         131 S  131 (183)
Q Consensus       131 ~  131 (183)
                      .
T Consensus        92 ~   92 (94)
T 1wjz_A           92 S   92 (94)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=4.1e-18  Score=119.60  Aligned_cols=70  Identities=26%  Similarity=0.398  Sum_probs=61.2

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL  127 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l  127 (183)
                      ...|||++|||+++++  ..+|+++||+|++++|||++...    .+.+.+.|..|++||++|+||.+|+.|+...
T Consensus         7 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   76 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQAS--SEAIKKAYRKLALKWHPDKNPEN----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYG   76 (82)
T ss_dssp             SSCCHHHHTTCCTTCC--HHHHHHHHHHHHTTSCTTTCSTT----HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred             CCcCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence            4579999999999865  59999999999999999998653    3456789999999999999999999998643

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=4.2e-18  Score=124.02  Aligned_cols=72  Identities=17%  Similarity=0.247  Sum_probs=62.9

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCC
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNI  130 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~  130 (183)
                      ...|||+||||+++++  ..+|+++||+|++++|||++.....     +.+.|..|++||++|+||.+|+.|+..|.+.
T Consensus        15 ~~~~~Y~vLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   86 (99)
T 2yua_A           15 SRTALYDLLGVPSTAT--QAQIKAAYYRQCFLYHPDRNSGSAE-----AAERFTRISQAYVVLGSATLRRKYDRGLLSD   86 (99)
T ss_dssp             CSSHHHHHHTCCTTCC--HHHHHHHHHHHHHHSCTTTCSSCSH-----HHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred             CccCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence            4579999999998865  5999999999999999999976432     5678999999999999999999999876543

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=4.1e-18  Score=118.82  Aligned_cols=70  Identities=21%  Similarity=0.396  Sum_probs=60.6

Q ss_pred             CCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513          51 DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL  127 (183)
Q Consensus        51 ~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l  127 (183)
                      ....|||++|||+++++  ..+|+++||+|++++|||++...+.     +.+.|..|++||++|+||.+|+.|+...
T Consensus         4 ~~~~~~y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   73 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNAS--QKEIKKAYYQLAKKYHPDTNKDDPK-----AKEKFSQLAEAYEVLSDEVKRKQYDAYG   73 (79)
T ss_dssp             SCCSCHHHHHTCCTTCC--HHHHHHHHHHHHHHTCTTTCSSCTT-----HHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred             CCCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence            34579999999999755  5999999999999999999976432     5678999999999999999999998643

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.74  E-value=4.4e-18  Score=125.74  Aligned_cols=74  Identities=24%  Similarity=0.444  Sum_probs=65.9

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQ  128 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~  128 (183)
                      ...|||++|||++++ ++.++|+++||+|++++|||++++  +.++..+.+.|..|++||++|+||.+|+.|+..+.
T Consensus        13 ~~~~~y~iLgv~~~a-~s~~eIk~aYr~l~~~~HPDk~~~--~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           13 GLENCYDVLEVNREE-FDKQKLAKAYRALARKHHPDRVKN--KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTSCHHHHTTCCGGG-CCHHHHHHHHHHHHHHTCGGGCCS--HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCC-CCHHHHHHHHHHHHHHHCcCCCCC--ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            357999999999985 356999999999999999999876  56677889999999999999999999999998664

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=7.7e-18  Score=117.26  Aligned_cols=68  Identities=26%  Similarity=0.414  Sum_probs=59.9

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL  127 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l  127 (183)
                      ...|||++|||+++++  ..+|+++||+|++++|||++...      .+.+.|..|++||++|+||.+|+.|+...
T Consensus         5 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~------~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~   72 (78)
T 2ctp_A            5 SSGDYYEILGVSRGAS--DEDLKKAYRRLALKFHPDKNHAP------GATEAFKAIGTAYAVLSNPEKRKQYDQFG   72 (78)
T ss_dssp             CSCCHHHHHTCCTTCC--HHHHHHHHHHHHTTSCTTTCSSH------HHHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred             CCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence            4579999999999865  59999999999999999998652      25688999999999999999999998654

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=1.2e-17  Score=118.99  Aligned_cols=69  Identities=30%  Similarity=0.357  Sum_probs=60.5

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQ  128 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~  128 (183)
                      ...|||++|||+++++  ..+|+++||+|++++|||++....      +.+.|..|++||++|+||.+|..|+....
T Consensus        15 ~~~d~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   83 (88)
T 2cug_A           15 LDFDPYRVLGVSRTAS--QADIKKAYKKLAREWHPDKNKDPG------AEDRFIQISKAYEILSNEEKRTNYDHYGS   83 (88)
T ss_dssp             SSSCHHHHHTCCTTCC--HHHHHHHHHHHHHHSCTTTCCSTT------HHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CCCCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCcCCCCChh------HHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence            4579999999999865  599999999999999999987642      46789999999999999999999987543

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.72  E-value=1e-17  Score=116.32  Aligned_cols=65  Identities=20%  Similarity=0.439  Sum_probs=58.2

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      .|||++|||+++++  .++|+++||+|++++|||++....      +.+.|..|++||++|+||.+|+.|+..
T Consensus         3 ~~~y~iLgv~~~as--~~~Ik~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~Yd~~   67 (77)
T 1hdj_A            3 KDYYQTLGLARGAS--DEEIKRAYRRQALRYHPDKNKEPG------AEEKFKEIAEAYDVLSDPRKREIFDRY   67 (77)
T ss_dssp             CCSHHHHTCCTTCC--HHHHHHHHHHHHHTTCTTTCCCTT------HHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCcc------HHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            58999999999865  599999999999999999987642      467899999999999999999999864

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=1.5e-17  Score=119.37  Aligned_cols=70  Identities=27%  Similarity=0.442  Sum_probs=61.6

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL  127 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l  127 (183)
                      ...|||++|||+++++.  .+|+++||+|++++|||++....    +.+.+.|..|++||++|+||.+|+.|+...
T Consensus         7 ~~~~~y~iLgv~~~as~--~eIk~ayr~l~~~~HPDk~~~~~----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   76 (92)
T 2dmx_A            7 GMANYYEVLGVQASASP--EDIKKAYRKLALRWHPDKNPDNK----EEAEKKFKLVSEAYEVLSDSKKRSLYDRAG   76 (92)
T ss_dssp             CCCCHHHHHTCCTTCCT--THHHHHHHHHHHHTCTTTCSSCS----HHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred             CCcCHHHHcCCCCCCCH--HHHHHHHHHHHHHHCCCCCCccH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence            34699999999998765  99999999999999999987643    356789999999999999999999998764

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.71  E-value=1.3e-17  Score=114.78  Aligned_cols=64  Identities=25%  Similarity=0.502  Sum_probs=57.1

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ...|||++|||+++++  ..+|+++||+|++++|||++++.        .+.|..|++||++|+||.+|+.|+.
T Consensus         6 ~~~~~y~iLgl~~~a~--~~eIk~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~   69 (73)
T 2och_A            6 KETGYYDVLGVKPDAS--DNELKKAYRKMALKFHPDKNPDG--------AEQFKQISQAYEVLSDEKKRQIYDQ   69 (73)
T ss_dssp             CCCCHHHHHTCCTTCC--HHHHHHHHHHHHHHTCTTTCTTC--------HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCcCH--------HHHHHHHHHHHHHHCCHHHHHHHHh
Confidence            3469999999999865  59999999999999999998653        3679999999999999999999975

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.9e-17  Score=118.00  Aligned_cols=68  Identities=22%  Similarity=0.338  Sum_probs=59.9

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL  127 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l  127 (183)
                      ...|||++|||+++++  .++|+++||+|++++|||++...      .+.+.|..|++||++|+||.+|..|+...
T Consensus         5 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~------~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   72 (88)
T 2ctr_A            5 SSGSYYDILGVPKSAS--ERQIKKAFHKLAMKYHPDKNKSP------DAEAKFREIAEAYETLSDANRRKEYDTLG   72 (88)
T ss_dssp             CCCSHHHHHTCCTTCC--HHHHHHHHHHHHHHTCTTTCCSH------HHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred             CCCCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCcCCCCCh------HHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence            4579999999999865  59999999999999999998731      35689999999999999999999998754

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.71  E-value=1.7e-17  Score=121.20  Aligned_cols=68  Identities=25%  Similarity=0.417  Sum_probs=60.6

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL  127 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l  127 (183)
                      .|||++|||+++++  .++|+++||+|++++|||++...    ++.+.+.|+.||+||++|+||.+|+.|+...
T Consensus         2 ~d~Y~iLgv~~~as--~~eIk~aYr~la~~~HPDk~~~~----~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g   69 (99)
T 2lgw_A            2 ASYYEILDVPRSAS--ADDIKKAYRRKALQWHPDKNPDN----KEFAEKKFKEVAEAYEVLSDKHKREIYDRYG   69 (99)
T ss_dssp             CCHHHHSSSCTTSC--HHHHHHHHHHHHHHTSTTTCCSC----CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCcc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence            58999999999876  49999999999999999998754    2356789999999999999999999999864

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=3.8e-17  Score=121.01  Aligned_cols=69  Identities=23%  Similarity=0.380  Sum_probs=60.3

Q ss_pred             CCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          51 DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        51 ~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      ....+||++|||+++++  .++|+++||+|++++|||++....     .+.+.|+.|++||++|+||.+|+.|+..
T Consensus        14 ~~~~~~Y~vLgv~~~as--~~eIk~aYr~la~~~HPDk~~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   82 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNAT--SDDIKKSYRKLALKYHPDKNPDNP-----EAADKFKEINNAHAILTDATKRNIYDKY   82 (109)
T ss_dssp             SCSCCHHHHHTCCTTCC--HHHHHHHHHHHHHHSCTTTSTTCH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCcCCCCCcH-----HHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            35579999999999865  599999999999999999987642     2568999999999999999999999853

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=3.6e-17  Score=121.62  Aligned_cols=70  Identities=23%  Similarity=0.254  Sum_probs=61.5

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQ  128 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~  128 (183)
                      ...|||++|||+++++  ..+|+++||+|++++|||++.+...     +.+.|..|++||++|+||.+|+.|+..+.
T Consensus        18 ~~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   87 (112)
T 2ctq_A           18 DTEDYYTLLGCDELSS--VEQILAEFKVRALECHPDKHPENPK-----AVETFQKLQKAKEILTNEESRARYDHWRR   87 (112)
T ss_dssp             CCCCHHHHTTCCTTSC--HHHHHHHHHHHHHTTCTTTCTTCST-----HHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCcHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence            4579999999999865  4999999999999999999975432     56889999999999999999999997653

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.68  E-value=6e-17  Score=116.41  Aligned_cols=66  Identities=21%  Similarity=0.376  Sum_probs=58.2

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL  127 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l  127 (183)
                      ...|||++|||+++++  .++|+++||+|++++|||++...        .+.|+.|++||++|+||.+|+.|+...
T Consensus         6 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~~~   71 (92)
T 2o37_A            6 KETKLYDLLGVSPSAN--EQELKKGYRKAALKYHPDKPTGD--------TEKFKEISEAFEILNDPQKREIYDQYG   71 (92)
T ss_dssp             SCCHHHHHHTCCTTCC--HHHHHHHHHHHHHHHCTTSTTCC--------HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred             cCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCh--------HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence            4579999999999855  59999999999999999998654        258999999999999999999998753

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.65  E-value=4.4e-17  Score=119.29  Aligned_cols=67  Identities=22%  Similarity=0.433  Sum_probs=58.9

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL  127 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l  127 (183)
                      .|||+||||+++++  .++|+++||+|++++|||++...+.     +.+.++.|++||++|+||.+|+.|+...
T Consensus         3 ~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~~   69 (103)
T 1bq0_A            3 QDYYEILGVSKTAE--EREIRKAYKRLAMKYHPDRNQGDKE-----AEAKFKEIKEAYEVLTDSQKRAAYDQYG   69 (103)
T ss_dssp             CCSTTTTSSCSSCC--HHHHHHHHHHHHTTTCTTTCTTTCT-----HHHHHHHHTTTTTSTTCSHHHHHTTTST
T ss_pred             CCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCcCCCCCcHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence            69999999999855  5999999999999999999976432     4578999999999999999999998643

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=2.4e-16  Score=112.98  Aligned_cols=63  Identities=22%  Similarity=0.326  Sum_probs=55.0

Q ss_pred             CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q psy8513          52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGL  122 (183)
Q Consensus        52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~  122 (183)
                      ...|||++|||+++++  .++|+++||+|++++|||++....      +.+.|..||+||++|+||.+|+.
T Consensus        25 ~~~~~y~iLgv~~~as--~~eIk~aYr~la~~~HPDk~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGAS--RDEVNKAYRKLAVLLHPDKCVAPG------SEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCC--HHHHHHHHHHHHHHHCTTTCCCTT------HHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCcCCCCCcc------HHHHHHHHHHHHHHHCCcccccC
Confidence            3479999999999765  599999999999999999997643      35679999999999999999874

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.61  E-value=1.4e-16  Score=111.76  Aligned_cols=62  Identities=15%  Similarity=0.215  Sum_probs=55.2

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY  123 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Y  123 (183)
                      ..++|++|||++++..+..+|+++||+|++++|||+.+.         .+.|+.||+||++|+||.+|+.+
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~---------~~~f~~i~~AYe~L~~~~~r~~~   71 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHHhhHHHHHHH
Confidence            358999999999966778999999999999999999753         36899999999999999999874

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.60  E-value=8e-17  Score=120.63  Aligned_cols=63  Identities=16%  Similarity=0.168  Sum_probs=58.0

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .+||+||||+++++.+..+||++||+|++++|||+.+.         .+.|+.||+||++|+||.+|+.|..
T Consensus         8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---------~e~f~~I~~AYevL~d~~~R~~~~~   70 (114)
T 1gh6_A            8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPD   70 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---------TTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred             hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---------HHHHHHHHHHHHHHCCHHHHHHhhh
Confidence            58999999999998888999999999999999999765         2689999999999999999999964

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.59  E-value=9.2e-16  Score=122.89  Aligned_cols=66  Identities=26%  Similarity=0.415  Sum_probs=58.8

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      .|||++|||+++++  .++|+++||+|++++|||++++.+.     +.+.|..|++||++|+||.+|+.|+..
T Consensus         2 ~~~y~~l~~~~~a~--~~~ik~ay~~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~~L~~~~~r~~yd~~   67 (210)
T 3apq_A            2 QNFYSLLGVSKTAS--SREIRQAFKKLALKLHPDKNPNNPN-----AHGDFLKINRAYEVLKDEDLRKKYDKY   67 (210)
T ss_dssp             CCHHHHHTCCTTCC--HHHHHHHHHHHHHHHCGGGCTTCTT-----HHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCChH-----HHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence            58999999999855  5999999999999999999976543     467899999999999999999999874

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.57  E-value=3.4e-16  Score=125.13  Aligned_cols=64  Identities=14%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ..+||++|||+++++.|.++|+++||++++++|||++++.         +.|+.||+||++|+||.+|+.|+.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~---------e~F~~I~~AYevLsdp~kR~~YD~   73 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---------EKMKKMNTLYKKMEDGVKYAHQPD   73 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC---------TTTTHHHHHHHHHHHHHHHHTSCG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH---------HHHHHHHHHHHHhCCHHHHHHHhc
Confidence            4699999999999998889999999999999999997652         678999999999999999999975

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.54  E-value=3.1e-15  Score=107.14  Aligned_cols=64  Identities=16%  Similarity=0.150  Sum_probs=55.6

Q ss_pred             CCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhH
Q psy8513          51 DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKR  120 (183)
Q Consensus        51 ~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~R  120 (183)
                      ....++|++|||+++++.  ++|+++||+|++++|||++...    .+.+.+.|+.|++||++|+|+..|
T Consensus        13 ~~~~~~y~vLgv~~~as~--~eIKkaYrkla~~~HPDk~~~~----~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           13 SILKEVTSVVEQAWKLPE--SERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCS--HHHHHHHHHHHHHTCTTTSSSC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHhCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCc----hHHHHHHHHHHHHHHHHHHhhccc
Confidence            345699999999998776  9999999999999999997653    245678999999999999998777

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.53  E-value=1.2e-15  Score=122.62  Aligned_cols=66  Identities=21%  Similarity=0.280  Sum_probs=58.7

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY  123 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Y  123 (183)
                      .+||++|||++.++  ..+||++||++++++|||++.+.+..  +++.+.|..||+||++|+||.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As--~~eIKkAYRklal~~HPDK~~~~~~e--~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVT--PEQVKKVYRKAVLVVHPDKATGQPYE--QYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSS--HHHHHHHHHHHHHHTCGGGGSSCTTH--HHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCC--HHHHHHHHHHHHHHHCcCcCCCcchH--HHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            58999999998855  59999999999999999999765433  37889999999999999999999876

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.49  E-value=1.4e-14  Score=107.09  Aligned_cols=63  Identities=21%  Similarity=0.306  Sum_probs=55.4

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhcCch
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSN--KNQEEQAISETYSSYLNKAYSILQNPL  118 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~--~~~~e~~~a~~~s~~In~AY~tL~dp~  118 (183)
                      ..+||++||++.   .+..+||++||++++++||||+.+  .++.++..|.+.|+.|++||++|+||.
T Consensus        40 ~~d~Y~vl~~~~---As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM---IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS---CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC---CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            469999999985   456999999999999999999864  356777788999999999999999985

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.46  E-value=1.5e-14  Score=99.36  Aligned_cols=58  Identities=14%  Similarity=0.228  Sum_probs=48.9

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKR  120 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~R  120 (183)
                      ..++|++|||++. +.+.++|+++||+|++++|||+.+.         .+.|+.||+||++|+|+..|
T Consensus        13 ~~~~y~iLgl~~~-~a~~~eIk~ayr~l~~~~HPDk~g~---------~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTEN-TLTKKKLKEVHRKIMLANHPDKGGS---------PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTT-TCCHHHHHHHHHHHHHHHCGGGTCC---------HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCC---------HHHHHHHHHHHHHHhhhhhc
Confidence            3589999999983 3456999999999999999999532         25889999999999998765

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.46  E-value=5.3e-15  Score=128.51  Aligned_cols=66  Identities=18%  Similarity=0.351  Sum_probs=0.0

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      ..|||++|||+++++.  ++||++||+|+++||||++...      .+.+.|+.||+||++|+||.+|+.|+..
T Consensus        27 ~~d~Y~vLgv~~~as~--~eIk~aYr~la~~~HPDk~~~~------~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   92 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDL--KTIKTAYRRLARKYHPDVSKEN------DAEAKFKDLAEAWEVLKDEQRRAEYDQL   92 (329)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCH--HHHHHHHHHHHHHHCCCCCCCh------HHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence            3699999999998765  8999999999999999997643      3568899999999999999999999864

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.37  E-value=1.5e-13  Score=99.23  Aligned_cols=59  Identities=17%  Similarity=0.203  Sum_probs=50.9

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQN  116 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~d  116 (183)
                      .++|++||+++.++  ..+||++||++++++|||++.+.+.  ...|.+.|..|++||++|++
T Consensus        33 ~~~y~~Lgv~~~as--~~eIKkAYRklal~~HPDK~~~~~~--~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVT--PEQVKKVYRKAVLVVHPCKATGQPY--EQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSS--HHHHHHHHHHHHHHTCHHHHTTSTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCchh--HhHHHHHHHHHHHHHHHHHh
Confidence            58999999999866  5999999999999999999876432  24678899999999999975

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.30  E-value=2.3e-13  Score=127.70  Aligned_cols=68  Identities=25%  Similarity=0.392  Sum_probs=37.7

Q ss_pred             CCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          51 DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        51 ~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      ....|||++|||+++++  .++||++||+|++++|||++++.+     .+.+.|..|++||++|+||.+|+.|+.
T Consensus        18 ~~~~~~y~~lg~~~~a~--~~~i~~ay~~l~~~~hpd~~~~~~-----~~~~~f~~i~~ay~~L~~~~~r~~yd~   85 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTAS--SREIRQAFKKLALKLHPDKNPNNP-----NAHGDFLKINRAYEVLKDEDLRKKYDK   85 (780)
T ss_dssp             -----CHHHHTCCTTCC--HHHHHHHHCC----------------------------CTHHHHHHSHHHHHHHTT
T ss_pred             CCCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCh-----HHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence            34579999999999865  599999999999999999986442     256789999999999999999999975

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.80  E-value=5.7e-09  Score=88.32  Aligned_cols=68  Identities=26%  Similarity=0.429  Sum_probs=56.3

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .++|.++|++...+.  .++++.|++++.++|||++..  +.+++.+.+.|..|++||++|+||.+|..|+-
T Consensus       382 ~~~y~~lg~~~~~~~--~~~~~~y~~~~l~~~pd~~~~--~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKK--QEIIKAYRKLALQWHPDNFQN--EEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCT--THHHHHHHHHHHHSCGGGCCS--HHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCH--HHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            489999999988655  899999999999999999854  45577788999999999999999999999974

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.48  E-value=1.2e-07  Score=64.03  Aligned_cols=53  Identities=13%  Similarity=0.095  Sum_probs=42.7

Q ss_pred             hhhhcCccccC-CCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q psy8513          56 YYNVFDMKMQY-LINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNP  117 (183)
Q Consensus        56 ~f~llgl~~~~-~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp  117 (183)
                      -+.||||+++. ..+.++|+++||+|....|||+.++         .-..+.||.|++.|...
T Consensus         6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS---------~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS---------FYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC---------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHHHHH
Confidence            47899999871 2356999999999999999999644         25668899999998643

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=81.64  E-value=0.67  Score=28.50  Aligned_cols=27  Identities=22%  Similarity=0.500  Sum_probs=20.9

Q ss_pred             CCCCCCCCC-CCC----CCcccCCCCCCCcCC
Q psy8513          24 ELKCWNCLK-SLS----GKSLFCQHCSSVQKP   50 (183)
Q Consensus        24 ~~~Cw~C~~-~~~----~~~~fC~~C~~~q~~   50 (183)
                      ...|+.|+. .+.    ...++|+.|+.+.+.
T Consensus         5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e   36 (50)
T 1pft_A            5 QKVCPACESAELIYDPERGEIVCAKCGYVIEE   36 (50)
T ss_dssp             CCSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred             cEeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence            458999998 542    267999999997764

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=81.50  E-value=0.6  Score=31.36  Aligned_cols=25  Identities=24%  Similarity=0.571  Sum_probs=19.3

Q ss_pred             CCCCCCCCCCCC---CcccCCCCCC-CcC
Q psy8513          25 LKCWNCLKSLSG---KSLFCQHCSS-VQK   49 (183)
Q Consensus        25 ~~Cw~C~~~~~~---~~~fC~~C~~-~q~   49 (183)
                      -.|..||..+..   ....|+.|+. |.-
T Consensus        29 Y~C~~CG~~~e~~~~d~irCp~CG~RILy   57 (70)
T 1twf_L           29 YICAECSSKLSLSRTDAVRCKDCGHRILL   57 (70)
T ss_dssp             EECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred             EECCCCCCcceeCCCCCccCCCCCceEeE
Confidence            379999997432   7789999999 543

>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}

Probab=81.25  E-value=0.61  Score=38.63  Aligned_cols=24  Identities=33%  Similarity=0.699  Sum_probs=18.2

Q ss_pred             CCCCCCCC-CC-------CCCcccCCCCCCCc
Q psy8513          25 LKCWNCLK-SL-------SGKSLFCQHCSSVQ   48 (183)
Q Consensus        25 ~~Cw~C~~-~~-------~~~~~fC~~C~~~q   48 (183)
                      .-|++||. ++       +...|+|++|+---
T Consensus        35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey   66 (257)
T 4esj_A           35 SYCPNCGNNPLNHFENNRPVADFYCNHCSEEF   66 (257)
T ss_dssp             CCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred             CcCCCCCChhhhhccCCCcccccccCCcchhh
Confidence            46999999 45       33779999998643

>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}

Probab=80.52  E-value=0.46  Score=26.28  Aligned_cols=13  Identities=54%  Similarity=1.676  Sum_probs=11.1

Q ss_pred             CCCCCCCCCCCCcccCCCCCC
Q psy8513          26 KCWNCLKSLSGKSLFCQHCSS   46 (183)
Q Consensus        26 ~Cw~C~~~~~~~~~fC~~C~~   46 (183)
                      .||+|        ++|..|+.
T Consensus         3 tcwsc--------lvcaacsv   15 (31)
T 2lbz_A            3 TCWSC--------LVCAACSV   15 (31)
T ss_dssp             CTTGG--------GGGGGCCS
T ss_pred             cHHHH--------HHHHHhHH
Confidence            69998        88999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	6e-13
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-05
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	0.002

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 59.3 bits (143), Expect = 6e-13
 Identities = 29/74 (39%), Positives = 48/74 (64%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
           +Y+ +F +  +Y ++   LS +F+ LQ Q HPDKF++ +Q EQ  +   S+ +N+A+  L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 115 QNPLKRGLYLLSLQ 128
           ++PL R  YLLSL 
Sbjct: 62  RHPLMRAEYLLSLH 75

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 52  PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAY 111
                +    + M  L+    + K ++     +HPDK     Q  +  ++     LN A+
Sbjct: 31  AGETKWKP--VGMADLVTPEQVKKVYRKAVLVVHPDK--ATGQPYEQYAKMIFMELNDAW 86

Query: 112 SILQNPLKRGLY 123
           S  +N  ++ LY
Sbjct: 87  SEFENQGQKPLY 98

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 55  NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDK-FSNKNQEEQAISETYSSYLNKAYSI 113
           ++Y++         N +DL +K++ L    HPDK  ++               +++A+ I
Sbjct: 17  DWYSILGADPS--ANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74

Query: 114 LQNPLKRGLY 123
           L N   +  Y
Sbjct: 75  LGNEETKKKY 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.92
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.81
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.76
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.68
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.68
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.54
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.4
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	98.86
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	84.86
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	83.83
d1k3xa3	40	Endonuclease VIII {Escherichia coli [TaxId: 562]}	82.29
d2cona1	66	RNA-binding protein NOB1 (Nin one binding) {Mouse	81.97
d1r2za3	46	DNA repair protein MutM (Fpg) {Bacillus stearother	81.69
d1k82a3	44	DNA repair protein MutM (Fpg) {Escherichia coli [T	81.24
d1tdza3	47	DNA repair protein MutM (Fpg) {Lactococcus lactis	80.27
d2j0151	59	Ribosomal protein L32p {Thermus thermophilus [TaxI	80.16

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.3e-26  Score=157.18  Aligned_cols=76  Identities=38%  Similarity=0.679  Sum_probs=73.8

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcC
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQN  129 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g  129 (183)
                      +|||++|||+++|++|.++|+++||++++++|||++.+.++.++..+.+.++.||+||+||+||.+|+.|++.|.|
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~g   76 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG   76 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999987

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.9e-20  Score=132.50  Aligned_cols=87  Identities=20%  Similarity=0.230  Sum_probs=73.4

Q ss_pred             CCCCCcCCCCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhcCchhHH
Q psy8513          43 HCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNK-NQEEQAISETYSSYLNKAYSILQNPLKRG  121 (183)
Q Consensus        43 ~C~~~q~~~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~-~~~e~~~a~~~s~~In~AY~tL~dp~~Ra  121 (183)
                      +++.........|||+||||+++++  ..+|+++|++|++++|||++... +...+..+.+.|..|++||++|+||.+|.
T Consensus         5 ~~~~~~~~~~~~d~Y~iLgv~~~as--~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~   82 (94)
T d1wjza_           5 SSGMALEQTLKKDWYSILGADPSAN--MSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             CSCSCCSSSSCSCHHHHTTCCTTCC--HHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             cccchhhhhhccChHHHcCCCCCcC--HHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            3444445555679999999999865  49999999999999999998654 55667778899999999999999999999


Q ss_pred             HHHHHhcCCC
Q psy8513         122 LYLLSLQNIS  131 (183)
Q Consensus       122 ~Yll~l~g~~  131 (183)
                      .|++.+.|..
T Consensus        83 ~YD~~~~~~~   92 (94)
T d1wjza_          83 KYDLQRSGPS   92 (94)
T ss_dssp             HHHHHSCCSC
T ss_pred             HHHHccCCCC
Confidence            9999988764

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=9.3e-19  Score=120.26  Aligned_cols=67  Identities=22%  Similarity=0.444  Sum_probs=59.3

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      ..|||++|||+++++.  .+|+++||++++++|||++.+.+.     +.+.|..|++||++|+||.+|+.|+..
T Consensus         2 k~dyY~vLgv~~~As~--~eIk~aYr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~vL~d~~~R~~YD~~   68 (75)
T d1xbla_           2 KQDYYEILGVSKTAEE--REIRKAYKRLAMKYHPDRNQGDKE-----AEAKFKEIKEAYEVLTDSQKRAAYDQY   68 (75)
T ss_dssp             CCCTTTTTCCSSSCCH--HHHHHHHHHHHHHTCCTTCTTTCH-----HHHHHHHHHHHHHHTTSSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCcCH--HHHHHHHHHHHhhhhhhccCCChH-----HHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence            4699999999998764  999999999999999999876543     356799999999999999999999853

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.9e-18  Score=116.25  Aligned_cols=64  Identities=20%  Similarity=0.425  Sum_probs=57.4

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL  125 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll  125 (183)
                      .|||++|||+++++.  ++|+++|+++++++|||++....      +.+.+..|++||++|+||.+|+.|+.
T Consensus         3 kdyY~iLgv~~~as~--~eIk~ay~~l~~~~hPD~~~~~~------~~~~~~~i~~Ay~vLsdp~~R~~YD~   66 (77)
T d1hdja_           3 KDYYQTLGLARGASD--EEIKRAYRRQALRYHPDKNKEPG------AEEKFKEIAEAYDVLSDPRKREIFDR   66 (77)
T ss_dssp             CCSHHHHTCCTTCCH--HHHHHHHHHHHHTTCTTTCCCTT------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CChHHHcCCCCCcCH--HHHHHHHHHHHHHhccccccchh------HHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence            599999999998664  99999999999999999987653      34678999999999999999999985

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.68  E-value=2.8e-18  Score=119.26  Aligned_cols=65  Identities=15%  Similarity=0.213  Sum_probs=58.4

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      ..+||+||||++++..|.++|+++||++++++|||+.+.         .+.|+.||+||++|+|+.+|..|...
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~---------~e~~~~in~Ay~~L~d~~~r~~~~~~   74 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRMNLG   74 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC---------HHHHHHHHHHHHHHCCHHHHHHHccC
Confidence            358999999999998899999999999999999999754         25789999999999999999999653

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.68  E-value=1.3e-18  Score=128.23  Aligned_cols=64  Identities=14%  Similarity=0.139  Sum_probs=58.3

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS  126 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~  126 (183)
                      .+||+||||++++..|.++||++||+|++++|||+.++.         +.|..||+||+||+||.+|+.|+..
T Consensus         8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~---------e~F~~I~~AY~vLsd~~kR~~YD~~   71 (114)
T d1gh6a_           8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---------EKMKKMNTLYKKMEDGVKYAHQPDF   71 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT---------TTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH---------HHHHHHHHHHHHhCCHHHHHHHhcc
Confidence            589999999999988889999999999999999997643         5799999999999999999999753

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=7e-16  Score=110.89  Aligned_cols=67  Identities=19%  Similarity=0.292  Sum_probs=58.5

Q ss_pred             CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q psy8513          53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY  123 (183)
Q Consensus        53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Y  123 (183)
                      ..++|+.||+...  ++.++|+++||++++.+|||++.+.+.  ++.+.+.|..||+||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~--~t~~eIk~aYr~l~~~~HPDk~~~~~~--~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADL--VTPEQVKKVYRKAVLVVHPDKATGQPY--EQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGC--CSHHHHHHHHHHHHHHSCHHHHTTSTT--HHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCcc--CCHHHHHHHHHHHHHHhccccCCChHH--HHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            3478999999986  567999999999999999999876543  456788999999999999999999987

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1e-13  Score=97.68  Aligned_cols=59  Identities=17%  Similarity=0.215  Sum_probs=51.5

Q ss_pred             CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCch
Q psy8513          54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPL  118 (183)
Q Consensus        54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~  118 (183)
                      .++|++||++.+++.  ++|+++||+|+++||||++++.    .+.+.+.|..|++||++|+++.
T Consensus        16 ~~~y~iL~v~~~as~--~eIKkAYrrl~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~~~~   74 (88)
T d1iura_          16 KEVTSVVEQAWKLPE--SERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRLEKQA   74 (88)
T ss_dssp             HHHHHHHHHTTSSCS--HHHHHHHHHHHHHTCTTTSSSC----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCCH--HHHHHHHHHHHHHhccccccch----hhHHHHHHHHHHHHHHHHHHHH
Confidence            599999999998776  9999999999999999997653    3457889999999999997543

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2.6e-09  Score=75.32  Aligned_cols=48  Identities=29%  Similarity=0.388  Sum_probs=43.0

Q ss_pred             cCccCCHHHHHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513         135 DSKGTDQKLLMEILMLNEELDEA---SSEEDLENLQTSIRATIEELTKKVN  182 (183)
Q Consensus       135 ~~~~~d~~fLme~me~~E~le~a---~~~~~l~~l~~~~~~~i~~~~~~l~  182 (183)
                      ..+.+||+|||++|||||+|+++   .+.+.|..+..+++.+++++...|.
T Consensus         7 ~~T~~DpeFLMeqME~RE~lee~~~~~d~~~l~~l~~ei~~~~~~~~~~l~   57 (95)
T d1fpoa2           7 QHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMV   57 (95)
T ss_dssp             SSCCSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999997   4678899999999999999988764

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.86  E-value=0.17  Score=28.72  Aligned_cols=28  Identities=25%  Similarity=0.589  Sum_probs=21.5

Q ss_pred             CCCCCCCCCCCC---CCcccCCCCCCCcCCC
Q psy8513          24 ELKCWNCLKSLS---GKSLFCQHCSSVQKPD   51 (183)
Q Consensus        24 ~~~Cw~C~~~~~---~~~~fC~~C~~~q~~~   51 (183)
                      -+.|++|+....   ...++||.|++-=++.
T Consensus         3 lP~CP~C~seytYedg~l~vCPeC~hEW~~~   33 (38)
T d2akla2           3 LPPCPQCNSEYTYEDGALLVCPECAHEWSPN   33 (38)
T ss_dssp             SCCCTTTCCCCCEECSSSEEETTTTEEECTT
T ss_pred             CCcCCCCCCcceEcCCCEEECCcccCcCCcc
Confidence            468999999754   3889999999855443

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=83.83  E-value=0.11  Score=30.48  Aligned_cols=30  Identities=20%  Similarity=0.606  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCC--CcccCCCCCCCcCCCCCCChhhhcC
Q psy8513          26 KCWNCLKSLSG--KSLFCQHCSSVQKPDPQNNYYNVFD   61 (183)
Q Consensus        26 ~Cw~C~~~~~~--~~~fC~~C~~~q~~~~~~~~f~llg   61 (183)
                      .|.+||.....  .+-.||.|++-|      .||+++.
T Consensus        10 ~C~~CGyi~~g~~aP~~CPvC~~p~------~~Fe~~~   41 (44)
T d1lkoa2          10 RCRNCGYVHEGTGAPELCPACAHPK------AHFELLG   41 (44)
T ss_dssp             EETTTCCEEEEEECCSBCTTTCCBG------GGEEECC
T ss_pred             EcCCCCcEEECCCCCCcCCCCCCcH------HHHeecc
Confidence            69999986543  556999999843      6777764

>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
domain: Endonuclease VIII
species: Escherichia coli [TaxId: 562]

Probab=82.29  E-value=0.17  Score=28.95  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=18.1

Q ss_pred             CCCCCCCCCCCCC------CcccCCCCC
Q psy8513          24 ELKCWNCLKSLSG------KSLFCQHCS   45 (183)
Q Consensus        24 ~~~Cw~C~~~~~~------~~~fC~~C~   45 (183)
                      ...|..|+.++..      ..+|||.|.
T Consensus        12 g~pC~~C~~~I~~~~~~gR~t~~Cp~CQ   39 (40)
T d1k3xa3          12 GEPCERCGSIIEKTTLSSRPFYWCPGCQ   39 (40)
T ss_dssp             TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred             CCccCcCCCEEEEEEECCCCCEEChhhC
Confidence            4589999998653      889999996

>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: NOB1 zinc finger-like
family: NOB1 zinc finger-like
domain: RNA-binding protein NOB1 (Nin one binding)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.97  E-value=0.27  Score=31.21  Aligned_cols=22  Identities=41%  Similarity=1.146  Sum_probs=17.1

Q ss_pred             CCCCCCCCCCCC-CcccCCCCCC
Q psy8513          25 LKCWNCLKSLSG-KSLFCQHCSS   46 (183)
Q Consensus        25 ~~Cw~C~~~~~~-~~~fC~~C~~   46 (183)
                      ..|..|-..... ...|||+||.
T Consensus         9 LrC~aCf~~t~~~~k~FCpkCGn   31 (66)
T d2cona1           9 LRCHGCFKTTSDMNRVFCGHCGN   31 (66)
T ss_dssp             EECSSSCCEESCSSCCSCSSSCC
T ss_pred             eEeeecCcCcCCcccccCcccCC
Confidence            368888886544 7899999996

>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.69  E-value=0.18  Score=29.58  Aligned_cols=23  Identities=17%  Similarity=0.586  Sum_probs=18.4

Q ss_pred             CCCCCCCCCCCCC------CcccCCCCCC
Q psy8513          24 ELKCWNCLKSLSG------KSLFCQHCSS   46 (183)
Q Consensus        24 ~~~Cw~C~~~~~~------~~~fC~~C~~   46 (183)
                      ...|..|+.++..      ..+|||.|..
T Consensus        18 g~~C~~C~~~I~~~~~~gR~t~~Cp~CQK   46 (46)
T d1r2za3          18 GNPCKRCGTPIEKTVVAGRGTHYCPRCQR   46 (46)
T ss_dssp             TSBCTTTCCBCEEEEETTEEEEECTTTCC
T ss_pred             CCccCCCCCeEEEEEECCCcCEEChhhCC
Confidence            4589999998653      8899999963

>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Escherichia coli [TaxId: 562]

Probab=81.24  E-value=0.19  Score=29.23  Aligned_cols=22  Identities=18%  Similarity=0.720  Sum_probs=18.0

Q ss_pred             CCCCCCCCCCCCC------CcccCCCCC
Q psy8513          24 ELKCWNCLKSLSG------KSLFCQHCS   45 (183)
Q Consensus        24 ~~~Cw~C~~~~~~------~~~fC~~C~   45 (183)
                      ...|..|+.++..      ..+||+.|.
T Consensus        16 g~~C~~C~~~I~~~~~~~R~t~~Cp~CQ   43 (44)
T d1k82a3          16 GEPCRVCGTPIVATKHAQRATFYCRQCQ   43 (44)
T ss_dssp             TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred             CCCcCCCCCEEEEEEECCcccEEChhhc
Confidence            4589999998653      889999996

>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Lactococcus lactis [TaxId: 1358]

Probab=80.27  E-value=0.21  Score=29.43  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=18.5

Q ss_pred             CCCCCCCCCCCCC------CcccCCCCCC
Q psy8513          24 ELKCWNCLKSLSG------KSLFCQHCSS   46 (183)
Q Consensus        24 ~~~Cw~C~~~~~~------~~~fC~~C~~   46 (183)
                      ...|..|+.++..      ..+|||.|..
T Consensus        18 g~~C~~C~~~I~~~~~~gR~t~~Cp~CQk   46 (47)
T d1tdza3          18 GEKCSRCGAEIQKIKVAGRGTHFCPVCQQ   46 (47)
T ss_dssp             TSBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred             CCCcCCCCcEEEEEEECCcccEECccccC
Confidence            4589999997653      8899999963

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

Probab=80.16  E-value=0.5  Score=29.19  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=18.7

Q ss_pred             CCCCCCCCCCCCCCCcccCCCCCC
Q psy8513          23 LELKCWNCLKSLSGKSLFCQHCSS   46 (183)
Q Consensus        23 ~~~~Cw~C~~~~~~~~~fC~~C~~   46 (183)
                      .-..|.+||.... +...|++||.
T Consensus        28 ~l~~C~~CG~~~~-pHrvC~~CG~   50 (59)
T d2j0151          28 TLVPCPECKAMKP-PHTVCPECGY   50 (59)
T ss_dssp             CCBCCSSSSSCBC-TTCBCTTTCC
T ss_pred             ceeECCCCCCccc-ceeECCCCCe
Confidence            3457999999754 7889999996