Psyllid ID: psy8528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRDFCIITMIIKTCT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEEEEEEHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccEccccccccccccccccccccccccccEEEEEEEEcccc
Coil and Loop (DISEMBL)
MLSNLAKLASNVVRQNVRslsttqrlnhdalfvhrdtkddnldvkfeftpdnkKRAEAIISIYPVGHERAAVIPLLDLaqrqhgwlpisAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNwctttpcwlrnSDAILEVIKKKCNMMlerqdlepkdMEQIIDDLkagkkpapgpsgytsgigsqsgrFCQAREAyhdmtsltgephgpwdskrdFCIITMIIKTCT
Flexible Loop (DISEMBL)
MLSNLAKLASNVVRqnvrslsttqrlnhdalfvhrdtkddnldvkfeftpdnkkrAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTsltgephgpwdskrdFCIITMIIKTCT
Low Complexity Region (SEG)
MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRDFCIITMIIKTCT
Disordered region (IsUnstruct)
*************************LNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML************************************************************PWDSKRDFCIITMIIKT**
Disordered Region (DISOPRED)
****************************************NLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIIDDLKAGKKPAPGPSGYTS***********AREAYHDMTSLTGEPHGPWDSKRDFCIITMIIKTC*
Disordered Region (DISEMBL)
MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRDFCIITMIIKTCT
Disordered Region (DISPRO)
********AS**VRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIIDDLKAGKKPA**************************MTSLTGEPHGPWDSKRDFCIITMIIKTCT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRDFCIITMIIKTCT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q0MQI9	249	NADH dehydrogenase [ubiqu	yes	N/A	0.787	0.759	0.481	2e-52
P04394	249	NADH dehydrogenase [ubiqu	yes	N/A	0.787	0.759	0.477	2e-52
Q9D6J6	248	NADH dehydrogenase [ubiqu	yes	N/A	0.725	0.701	0.491	2e-52
Q0MQI7	249	NADH dehydrogenase [ubiqu	N/A	N/A	0.787	0.759	0.481	4e-52
Q0MQI8	249	NADH dehydrogenase [ubiqu	N/A	N/A	0.787	0.759	0.481	4e-52
Q20719	239	Probable NADH dehydrogena	yes	N/A	0.816	0.820	0.461	6e-52
P19404	249	NADH dehydrogenase [ubiqu	yes	N/A	0.787	0.759	0.481	6e-52
P19234	248	NADH dehydrogenase [ubiqu	yes	N/A	0.762	0.737	0.467	2e-51
P40915	263	NADH-ubiquinone oxidoredu	N/A	N/A	0.866	0.790	0.369	7e-38
Q9ZDH5	177	NADH-quinone oxidoreducta	yes	N/A	0.441	0.598	0.530	7e-28

>sp|Q0MQI9|NDUV2_PANTR NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pan troglodytes GN=NDUFV2 PE=2 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T + N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAKQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Pan troglodytes (taxid: 9598)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: 3

>sp|P04394|NDUV2_BOVIN NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Bos taurus GN=NDUFV2 PE=1 SV=3

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +++R+L  T   N    ALFVHRDT ++N +  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  KHIRNLHKTAVQNGAGGALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q9D6J6|NDUV2_MOUSE NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Mus musculus GN=Ndufv2 PE=1 SV=2

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 139/224 (62%), Gaps = 50/224 (22%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 36  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPIS 95

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LR+SD+I
Sbjct: 96  AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSI 147

Query: 150 LEVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDL 178
           LE +++K  + +                                 +DL PKD+E+IID+L
Sbjct: 148 LETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDEL 207

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           KAGK P PGP         +SGRFC   E    +TSLT  P GP
Sbjct: 208 KAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 240

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQI7|NDUV2_PONPY NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pongo pygmaeus GN=NDUFV2 PE=2 SV=1

 Score =  204 bits (520), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQI8|NDUV2_GORGO NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFV2 PE=2 SV=1

 Score =  204 bits (520), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q20719|NDUV2_CAEEL Probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Caenorhabditis elegans GN=F53F4.10 PE=1 SV=1

 Score =  204 bits (518), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 114/247 (46%), Positives = 147/247 (59%), Gaps = 51/247 (20%)

Query: 8   LASNVVRQNVR-SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           LASNV+ Q  R      +R     L VHRDTK++NL+VKF+FT +N++R +AI+ IYP G
Sbjct: 3   LASNVLLQASRLGEMVIKRGGATGLMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEG 62

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           H+  A+IPLLDLAQRQHGWLPISAMH VA  L +P+MR YEVATFYTMF R+P+G     
Sbjct: 63  HKAGALIPLLDLAQRQHGWLPISAMHEVAKILEVPRMRAYEVATFYTMFNRQPVG----- 117

Query: 127 SILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------------M 160
              +Y L  C TTPC LR ++ I E I+KK  +                          M
Sbjct: 118 ---KYFLQVCATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPM 174

Query: 161 LE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           ++      +DL PKD+ +I+DDLKAG+KPA GP         +SGR   A E + ++TSL
Sbjct: 175 IQINDDYFEDLTPKDVNEILDDLKAGRKPAAGP---------RSGRL--AAEPFGELTSL 223

Query: 216 TGEPHGP 222
              P GP
Sbjct: 224 KETPPGP 230

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P19404|NDUV2_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2

 Score =  204 bits (518), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P19234|NDUV2_RAT NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Rattus norvegicus GN=Ndufv2 PE=1 SV=2

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/233 (46%), Positives = 140/233 (60%), Gaps = 50/233 (21%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           +  Q     ALFVHRDT ++N D  F+FTP+N +R EAI+  YP GH  AAV+P+LDLAQ
Sbjct: 27  TAVQNGAGGALFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQ 86

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTP
Sbjct: 87  RQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTP 138

Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
           C LR+SD+ILE +++K  + +                                 +DL PK
Sbjct: 139 CMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPK 198

Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           D+E+IID+L+AGK P PGP         +SGRFC   E    +TSLT  P GP
Sbjct: 199 DIEEIIDELRAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 240

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P40915|NDUV2_NEUCR NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-24 PE=2 SV=1

 Score =  157 bits (397), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 138/265 (52%), Gaps = 57/265 (21%)

Query: 3   SNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
           + L+   S +   +   LS + R   D L VHR+T D+N D+ F+F+ DN+K  E II  
Sbjct: 18  TRLSTKPSTIAPVSRACLSISARRPSDTLMVHRNTPDNNPDIPFKFSADNEKVIEEIIKR 77

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G 
Sbjct: 78  YPPQYKKAAVMPLLDLGQRQHGFCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVG- 136

Query: 123 ERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM--------------------- 159
                  ++H+  CTTTPC L    SD I++ IK+   +                     
Sbjct: 137 -------KFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLFTFIEVECLGA 189

Query: 160 -----MLE-----RQDLEPKDMEQIIDDLK-----AGKKPAPGPSGYTSGIGSQSGRFCQ 204
                M++      +DL P+ ++Q++  LK       K P PGP         QSGR  Q
Sbjct: 190 CANAPMVQINDDYFEDLTPETIKQVLSALKESVTDVSKAPQPGP---------QSGR--Q 238

Query: 205 AREAYHDMTSLTGEPHGPWDSKRDF 229
             E    +TSLT EP+GP  ++ D 
Sbjct: 239 TCENAAGLTSLTSEPYGPEVTRSDL 263

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q9ZDH5|NUOE_RICPR NADH-quinone oxidoreductase subunit E OS=Rickettsia prowazekii (strain Madrid E) GN=nuoE PE=3 SV=1

 Score =  124 bits (310), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 77/115 (66%), Gaps = 9/115 (7%)

Query: 43  DVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLP 101
           +  F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WL +SA+ YVA+ L +P
Sbjct: 7   NFTFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMP 66

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            MR YEVATFYTMF   PIG        +YH+  CTTTPCWLR SD I+++ +KK
Sbjct: 67  YMRAYEVATFYTMFNLNPIG--------KYHIQVCTTTPCWLRGSDNIMKICEKK 113

NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
91079340	243	PREDICTED: similar to CG5703 CG5703-PA [	0.837	0.827	0.507	3e-60
193669336	240	PREDICTED: probable NADH dehydrogenase [	0.837	0.837	0.509	2e-59
332374938	243	unknown [Dendroctonus ponderosae]	0.770	0.761	0.523	3e-58
194766874	242	GF22392 [Drosophila ananassae] gi|190619	0.845	0.838	0.486	5e-57
195481106	242	GE17674 [Drosophila yakuba] gi|194189041	0.845	0.838	0.486	1e-56
194892023	242	GG19123 [Drosophila erecta] gi|190649229	0.845	0.838	0.486	1e-56
18859877	242	CG5703 [Drosophila melanogaster] gi|1953	0.845	0.838	0.486	1e-56
27820078	269	GH08937p, partial [Drosophila melanogast	0.845	0.754	0.486	2e-56
388514315	241	unknown [Lotus japonicus]	0.841	0.838	0.490	3e-56
195131273	242	GI14890 [Drosophila mojavensis] gi|19390	0.845	0.838	0.478	1e-55

>gi|91079340|ref|XP_969318.1| PREDICTED: similar to CG5703 CG5703-PA [Tribolium castaneum] gi|270004890|gb|EFA01338.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Tribolium castaneum]

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/256 (50%), Positives = 159/256 (62%), Gaps = 55/256 (21%)

Query: 1   MLSNLAKLASNVVRQ-NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           ML+ +  + S + R   VRSL T   L H+A+F HRDT +DN D+ F+FTP+NKKRA+AI
Sbjct: 1   MLTTIKTVGSCLRRTLGVRSLQTASTLQHEAVFNHRDTPEDNPDIPFDFTPENKKRADAI 60

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++IYP GH+RAA+IPLLDLAQRQHGWLPISAMH VA+ LNLP+MRVYEVATFYTMF+RKP
Sbjct: 61  LAIYPEGHKRAAMIPLLDLAQRQHGWLPISAMHKVAEILNLPRMRVYEVATFYTMFMRKP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE----------------- 162
            G        +YH+  CTTTPCWLR SD IL+ I  KCN+ LE                 
Sbjct: 121 TG--------KYHIQVCTTTPCWLRGSDEILDTI--KCNLKLEVGETSSDGMFTLSEVEC 170

Query: 163 ----------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAR 206
                            +DL  KD E+I++DLK  KKP PGP         ++GRF  A 
Sbjct: 171 LGACVNAPMIQVNDDYYEDLTAKDTEEILNDLKNNKKPKPGP---------RNGRF--AA 219

Query: 207 EAYHDMTSLTGEPHGP 222
           E   + T L GEP GP
Sbjct: 220 EPIGEPTCLAGEPPGP 235

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193669336|ref|XP_001946901.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Acyrthosiphon pisum]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/253 (50%), Positives = 159/253 (62%), Gaps = 52/253 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS L K+A  ++  N R+  T+  L HD +F HRDTK+DNLD+KFEF+ +NKKR +AI+
Sbjct: 1   MLS-LNKIAKCLL-SNSRTFQTSAVLKHDTMFNHRDTKEDNLDIKFEFSDENKKRIDAIL 58

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           +IYP GH+RAA+IPLLDLAQRQHGWLPISAMH VAD L+LPKMRVYEVATFYTMF+RKP 
Sbjct: 59  AIYPEGHKRAAMIPLLDLAQRQHGWLPISAMHKVADVLDLPKMRVYEVATFYTMFMRKPT 118

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YHL  CTTTPCWLR SD ++  +KKK ++ +                   
Sbjct: 119 G--------KYHLQVCTTTPCWLRGSDDVISCLKKKLDIGVGETSKDGQWTLSEVECLGA 170

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KD+E IIDDLK GK P PGP         +S R+  A E  
Sbjct: 171 CVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGKTPTPGP---------RSSRY--ASEPM 219

Query: 210 HDMTSLTGEPHGP 222
             +TSL  EP+GP
Sbjct: 220 DGLTSLKEEPYGP 232

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|332374938|gb|AEE62610.1| unknown [Dendroctonus ponderosae]

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/235 (52%), Positives = 148/235 (62%), Gaps = 50/235 (21%)

Query: 16  NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPL 75
            +RSL TT    HD+LFVHRDT +DN D+ FEF+ DNKKR EAI++IYP GH+RAA+IPL
Sbjct: 17  GLRSLQTTASRAHDSLFVHRDTPEDNPDIPFEFSADNKKRVEAILAIYPEGHKRAAMIPL 76

Query: 76  LDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNW 135
           LDLAQRQ+GWLPISAMH+VAD L LPKMRVYEVATFYTMF+RKP G        +YHL  
Sbjct: 77  LDLAQRQYGWLPISAMHHVADILKLPKMRVYEVATFYTMFMRKPTG--------KYHLQV 128

Query: 136 CTTTPCWLRNSDAILEVIKKKCNMMLER-------------------------------Q 164
           CTTTPCWLR S+ IL+ IKK   + +                                 +
Sbjct: 129 CTTTPCWLRGSNEILDTIKKNLGLEVGETSSDKLFTISEVECLGACVNAPMVQINDDYYE 188

Query: 165 DLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
           DL  +D E+I+ DLKAG+KP PGP         +SGR+  A E   + TSL GEP
Sbjct: 189 DLTVQDTEEILADLKAGRKPKPGP---------RSGRY--AAEPIGEPTSLKGEP 232

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194766874|ref|XP_001965549.1| GF22392 [Drosophila ananassae] gi|190619540|gb|EDV35064.1| GF22392 [Drosophila ananassae]

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A    + VR  +R+++T+     D LFVHRDT +DN ++ FEFTP+NKKR EAI+
Sbjct: 1   MLTNCAAKTLSAVRCGIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTPENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILELPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR SD ILE  KK+ ++ +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDEILETCKKQLSIGVGETTKDKKFTISEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I+ DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVSVNDDYYEDLTAKDMQNILADLKADKPSPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL  EP GP
Sbjct: 222 GEPTSLIEEPKGP 234

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195481106|ref|XP_002101517.1| GE17674 [Drosophila yakuba] gi|194189041|gb|EDX02625.1| GE17674 [Drosophila yakuba]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A      VR N+R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 1   MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE------------------ 162
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDDILETCKKQLGIGVGDTTKDKKFTISEVECLGA 172

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I++DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVAINDDYYEDLTAKDMQDILNDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL+ EP GP
Sbjct: 222 GEPTSLSEEPKGP 234

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194892023|ref|XP_001977580.1| GG19123 [Drosophila erecta] gi|190649229|gb|EDV46507.1| GG19123 [Drosophila erecta]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A      VR N+R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 1   MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE------------------ 162
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDDILETCKKQLGIGVGDTTKDKKFTISEVECLGA 172

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I++DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVAINDDYYEDLTAKDMQDILNDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL+ EP GP
Sbjct: 222 GEPTSLSEEPKGP 234

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18859877|ref|NP_573228.1| CG5703 [Drosophila melanogaster] gi|195351760|ref|XP_002042397.1| GM13517 [Drosophila sechellia] gi|195567381|ref|XP_002107239.1| GD15675 [Drosophila simulans] gi|7293367|gb|AAF48745.1| CG5703 [Drosophila melanogaster] gi|194124240|gb|EDW46283.1| GM13517 [Drosophila sechellia] gi|194204644|gb|EDX18220.1| GD15675 [Drosophila simulans] gi|220944522|gb|ACL84804.1| CG5703-PA [synthetic construct] gi|220954400|gb|ACL89743.1| CG5703-PA [synthetic construct]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A      VR N+R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 1   MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE------------------ 162
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDDILETCKKQLGIGVGDTTKDRKFTISEVECLGA 172

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I++DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVAINDDYYEDLTSKDMQDILNDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL+ EP GP
Sbjct: 222 GEPTSLSEEPKGP 234

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27820078|gb|AAL68189.2| GH08937p, partial [Drosophila melanogaster]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A      VR N+R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 28  MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 87

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 88  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQLPNMRVYEVATFYTMFMRKPT 147

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE------------------ 162
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 148 G--------KYHIQVCTTTPCWLRGSDDILETCKKQLGIGVGDTTKDRKFTISEVECLGA 199

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I++DLKA K   PGP         ++GRF  A E  
Sbjct: 200 CVNAPMVAINDDYYEDLTSKDMQDILNDLKADKISPPGP---------RNGRF--ASEPK 248

Query: 210 HDMTSLTGEPHGP 222
            + TSL+ EP GP
Sbjct: 249 GEPTSLSEEPKGP 261

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|388514315|gb|AFK45219.1| unknown [Lotus japonicus]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 124/253 (49%), Positives = 154/253 (60%), Gaps = 51/253 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS+  +L + V  +NVR+  ++  +  D LFVHRDT +DN    FEFT +NKKRA+AI+
Sbjct: 1   MLSSAKRLFA-VASRNVRNFQSSSSVLSDNLFVHRDTPEDNASTPFEFTAENKKRADAIL 59

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+RAA+IPLLDLAQRQHGWLPISAMH VA+ L+LP MRVYEVATFYTMF+RKP 
Sbjct: 60  SIYPEGHKRAAMIPLLDLAQRQHGWLPISAMHKVAEILDLPNMRVYEVATFYTMFMRKPT 119

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR SD +LE  KK+  + +                   
Sbjct: 120 G--------KYHIQVCTTTPCWLRGSDEVLEACKKQIGIGVGETSKDMKFTISEVECLGA 171

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KD E+II  LK G KP P         G ++GRF  A E++
Sbjct: 172 CVNAPMMAVNDDYYEDLTAKDTEEIIQALKNG-KPTPA--------GPRNGRF--ASESH 220

Query: 210 HDMTSLTGEPHGP 222
             +TSLT EP GP
Sbjct: 221 GQLTSLTEEPKGP 233

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195131273|ref|XP_002010075.1| GI14890 [Drosophila mojavensis] gi|193908525|gb|EDW07392.1| GI14890 [Drosophila mojavensis]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/253 (47%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLSN A      VR ++R+++T+     D LFVHRDT +DN ++ FEF+ +NKKR EAI+
Sbjct: 1   MLSNCAAKTLAAVRGSLRAIATSSAQRSDNLFVHRDTPEDNPNIPFEFSAENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILGLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDEILETCKKQLGIGVGETTKDKKFTISEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM++I++DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVSINDDYYEDLTGKDMQEILNDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL  +P GP
Sbjct: 222 GEPTSLIEDPKGP 234

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
FB|FBgn0030853	269	CG5703 [Drosophila melanogaste	0.616	0.550	0.621	7.8e-56
UNIPROTKB|E1BUZ0	246	NDUFV2 "Uncharacterized protei	0.595	0.581	0.6	2.6e-51
UNIPROTKB|F1SM98	249	NDUFV2 "Uncharacterized protei	0.558	0.538	0.604	2.6e-51
UNIPROTKB|E2QVP4	249	NDUFV2 "Uncharacterized protei	0.55	0.530	0.612	5.4e-51
UNIPROTKB|Q0MQI9	249	NDUFV2 "NADH dehydrogenase [ub	0.558	0.538	0.604	6.8e-51
UNIPROTKB|P04394	249	NDUFV2 "NADH dehydrogenase [ub	0.558	0.538	0.590	8.7e-51
MGI|MGI:1920150	248	Ndufv2 "NADH dehydrogenase (ub	0.495	0.479	0.622	1.1e-50
UNIPROTKB|E7EPT4	252	NDUFV2 "NADH dehydrogenase [ub	0.558	0.531	0.604	1.8e-50
UNIPROTKB|P19404	249	NDUFV2 "NADH dehydrogenase [ub	0.558	0.538	0.604	1.8e-50
WB|WBGene00009992	239	F53F4.10 [Caenorhabditis elega	0.587	0.589	0.566	2.6e-49

FB|FBgn0030853 CG5703 [Drosophila melanogaster (taxid:7227)]

 Score = 498 (180.4 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 97/156 (62%), Positives = 116/156 (74%)

Query:     1 MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
             ML+N A      VR N+R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct:    28 MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 87

Query:    61 SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
             SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct:    88 SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQLPNMRVYEVATFYTMFMRKPT 147

Query:   121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             G+        YH+  CTTTPCWLR SD ILE  KK+
Sbjct:   148 GK--------YHIQVCTTTPCWLRGSDDILETCKKQ 175

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS;IBA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS;IBA

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS;IBA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E1BUZ0 NDUFV2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 432 (157.1 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
 Identities = 93/155 (60%), Positives = 112/155 (72%)

Query:     5 LAKLASNVVRQNVRSLSTTQRLNHD--ALFVHRDTKDDNLDVKFEFTPDNKK-RAEAIIS 61
             L   AS  VRQ +R L  T   +    ALFVHRD+ ++N D  FEFTP+NKK R EAIIS
Sbjct:     7 LRAAASGSVRQ-IRYLHKTPACSSSGGALFVHRDSPENNPDTPFEFTPENKKKRIEAIIS 65

Query:    62 IYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121
              YP GH+ AAV+ +LDLAQRQHGWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G
Sbjct:    66 NYPGGHKSAAVMAVLDLAQRQHGWLPISAMNKVAEILEMPPMRVYEVATFYTMYNRKPVG 125

Query:   122 EERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +        YH+  CTTTPC LR+SD+ILE I+KK
Sbjct:   126 K--------YHIQVCTTTPCMLRDSDSILEAIQKK 152

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0048738 "cardiac muscle tissue development" evidence=IEA

UNIPROTKB|F1SM98 NDUFV2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 431 (156.8 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
 Identities = 87/144 (60%), Positives = 108/144 (75%)

Query:    15 QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
             ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct:    20 RHVRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query:    73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
             +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G+        YH
Sbjct:    80 LPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVGK--------YH 131

Query:   133 LNWCTTTPCWLRNSDAILEVIKKK 156
             +  CTTTPC LRNSD+ILE I+KK
Sbjct:   132 IQVCTTTPCMLRNSDSILEAIQKK 155

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

UNIPROTKB|E2QVP4 NDUFV2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 428 (155.7 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
 Identities = 87/142 (61%), Positives = 106/142 (74%)

Query:    17 VRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIP 74
             +R+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAII  YP GH+ AAV+P
Sbjct:    22 IRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIIKNYPEGHKAAAVLP 81

Query:    75 LLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLN 134
             +LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G+        YH+ 
Sbjct:    82 VLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGK--------YHIQ 133

Query:   135 WCTTTPCWLRNSDAILEVIKKK 156
              CTTTPC LRNSD+ILE I+KK
Sbjct:   134 VCTTTPCMLRNSDSILEAIQKK 155

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

UNIPROTKB|Q0MQI9 NDUFV2 "NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial" [Pan troglodytes (taxid:9598)]

 Score = 435 (158.2 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 87/144 (60%), Positives = 109/144 (75%)

Query:    15 QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
             ++VR+L  T + N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct:    20 RHVRNLHKTAKQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query:    73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
             +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G+        YH
Sbjct:    80 LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGK--------YH 131

Query:   133 LNWCTTTPCWLRNSDAILEVIKKK 156
             +  CTTTPC LRNSD+ILE I+KK
Sbjct:   132 IQVCTTTPCMLRNSDSILEAIQKK 155

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|P04394 NDUFV2 "NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
 Identities = 85/144 (59%), Positives = 108/144 (75%)

Query:    15 QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
             +++R+L  T   N    ALFVHRDT ++N +  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct:    20 KHIRNLHKTAVQNGAGGALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query:    73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
             +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G+        YH
Sbjct:    80 LPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVGK--------YH 131

Query:   133 LNWCTTTPCWLRNSDAILEVIKKK 156
             +  CTTTPC LRNSD+ILE I+KK
Sbjct:   132 IQVCTTTPCMLRNSDSILEAIQKK 155

GO:0005739 "mitochondrion" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1920150 Ndufv2 "NADH dehydrogenase (ubiquinone) flavoprotein 2" [Mus musculus (taxid:10090)]

 Score = 416 (151.5 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
 Identities = 79/127 (62%), Positives = 100/127 (78%)

Query:    30 ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
             ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct:    36 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPIS 95

Query:    90 AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
             AM+ VA+ L +P MRVYEVATFYTM+ RKP+G+        YH+  CTTTPC LR+SD+I
Sbjct:    96 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGK--------YHIQVCTTTPCMLRDSDSI 147

Query:   150 LEVIKKK 156
             LE +++K
Sbjct:   148 LETLQRK 154

GO:0003954 "NADH dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO;IBA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISO;IBA

GO:0006810 "transport" evidence=IEA

GO:0007399 "nervous system development" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IBA

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048738 "cardiac muscle tissue development" evidence=ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

UNIPROTKB|E7EPT4 NDUFV2 "NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 431 (156.8 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 87/144 (60%), Positives = 108/144 (75%)

Query:    15 QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
             ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct:    23 RHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 82

Query:    73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
             +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G+        YH
Sbjct:    83 LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGK--------YH 134

Query:   133 LNWCTTTPCWLRNSDAILEVIKKK 156
             +  CTTTPC LRNSD+ILE I+KK
Sbjct:   135 IQVCTTTPCMLRNSDSILEAIQKK 158

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|P19404 NDUFV2 "NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 431 (156.8 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 87/144 (60%), Positives = 108/144 (75%)

Query:    15 QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
             ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct:    20 RHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query:    73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
             +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G+        YH
Sbjct:    80 LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGK--------YH 131

Query:   133 LNWCTTTPCWLRNSDAILEVIKKK 156
             +  CTTTPC LRNSD+ILE I+KK
Sbjct:   132 IQVCTTTPCMLRNSDSILEAIQKK 155

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IMP;NAS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IMP;NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS;IMP

GO:0048738 "cardiac muscle tissue development" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0009055 "electron carrier activity" evidence=NAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

WB|WBGene00009992 F53F4.10 [Caenorhabditis elegans (taxid:6239)]

 Score = 413 (150.4 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 85/150 (56%), Positives = 106/150 (70%)

Query:     8 LASNVVRQNVR-SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
             LASNV+ Q  R      +R     L VHRDTK++NL+VKF+FT +N++R +AI+ IYP G
Sbjct:     3 LASNVLLQASRLGEMVIKRGGATGLMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEG 62

Query:    67 HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
             H+  A+IPLLDLAQRQHGWLPISAMH VA  L +P+MR YEVATFYTMF R+P+G+    
Sbjct:    63 HKAGALIPLLDLAQRQHGWLPISAMHEVAKILEVPRMRAYEVATFYTMFNRQPVGK---- 118

Query:   127 SILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
                 Y L  C TTPC LR ++ I E I+KK
Sbjct:   119 ----YFLQVCATTPCMLRGAETITETIEKK 144

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92ID9	NUOE_RICCN	1, ., 6, ., 9, 9, ., 5	0.5042	0.4583	0.6586	yes	N/A
Q9D6J6	NDUV2_MOUSE	1, ., 6, ., 9, 9, ., 3	0.4910	0.725	0.7016	yes	N/A
P04394	NDUV2_BOVIN	1, ., 6, ., 9, 9, ., 3	0.4771	0.7875	0.7590	yes	N/A
Q9ZDH5	NUOE_RICPR	1, ., 6, ., 9, 9, ., 5	0.5304	0.4416	0.5988	yes	N/A
P29914	NQO2_PARDE	1, ., 6, ., 9, 9, ., 5	0.3222	0.6583	0.6610	yes	N/A
P19234	NDUV2_RAT	1, ., 6, ., 9, 9, ., 3	0.4678	0.7625	0.7379	yes	N/A
P19404	NDUV2_HUMAN	1, ., 6, ., 9, 9, ., 3	0.4813	0.7875	0.7590	yes	N/A
Q20719	NDUV2_CAEEL	1, ., 6, ., 9, 9, ., 3	0.4615	0.8166	0.8200	yes	N/A
Q0MQI9	NDUV2_PANTR	1, ., 6, ., 9, 9, ., 3	0.4813	0.7875	0.7590	yes	N/A
Q68X20	NUOE_RICTY	1, ., 6, ., 9, 9, ., 5	0.5163	0.4625	0.6529	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.99	0.921

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	240
pfam01257	145	pfam01257, Complex1_24kDa, Respiratory-chain NADH	7e-45
PRK07539	154	PRK07539, PRK07539, NADH dehydrogenase subunit E;	1e-43
COG1905	160	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 k	6e-42
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	8e-38
TIGR01958	148	TIGR01958, nuoE_fam, NADH-quinone oxidoreductase,	5e-36
PRK07571	169	PRK07571, PRK07571, bidirectional hydrogenase comp	1e-12
cd03064	80	cd03064, TRX_Fd_NuoE, TRX-like [2Fe-2S] Ferredoxin	6e-06
PRK05988	156	PRK05988, PRK05988, formate dehydrogenase subunit	2e-04
cd02980	77	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2F	0.001

>gnl|CDD|216393 pfam01257, Complex1_24kDa, Respiratory-chain NADH dehydrogenase 24 Kd subunit

 Score =  146 bits (372), Expect = 7e-45
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 41/155 (26%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
            + II+ YP   +R+A+IPLL LAQ Q+G+LP  A+ Y+A+ L +P  RVYEVATFY+MF
Sbjct: 1   IDEIIAKYP--RKRSALIPLLHLAQEQYGYLPDEAIEYIAELLGIPPARVYEVATFYSMF 58

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN----------------- 158
             KP+G+        YH+  CTTTPC LR SD +LE +++K                   
Sbjct: 59  NLKPVGK--------YHIQVCTTTPCHLRGSDELLEALEEKLGIKPGETTPDGKFTLEEV 110

Query: 159 -----------MMLERQ---DLEPKDMEQIIDDLK 179
                      M +      DL P+ +++I++ LK
Sbjct: 111 ECLGACGNAPVMQINDDYYGDLTPEKVDEILEALK 145

Length = 145

>gnl|CDD|181024 PRK07539, PRK07539, NADH dehydrogenase subunit E; Validated

 Score =  143 bits (364), Expect = 1e-43
 Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 41/163 (25%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +     E  I+ YP    R+AVIP L + Q Q GW+P  A+  VAD+L +P + V E
Sbjct: 2   LSAEELAAIEREIAKYP--RPRSAVIPALKIVQEQRGWVPDEAIEAVADYLGMPAIDVEE 59

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK----------- 156
           VATFY+M  R+P+G         + +  CT+TPCWLR  +AIL  +KKK           
Sbjct: 60  VATFYSMIFRQPVGR--------HVIQVCTSTPCWLRGGEAILAALKKKLGIKPGETTAD 111

Query: 157 ---------CN--------MMLERQ---DLEPKDMEQIIDDLK 179
                    C         +M+      DL P+ +++++D+LK
Sbjct: 112 GRFTLLEVECLGACDNAPVVMINDDTYEDLTPEKIDELLDELK 154

Length = 154

>gnl|CDD|224817 COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]

 Score =  139 bits (353), Expect = 6e-42
 Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 10/112 (8%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+ +N +  EAII+ YP   +R+A+IPLL +AQ Q GWLP  A+  +AD L +P+ RV
Sbjct: 3   FAFSAENLELIEAIIAKYP--DKRSALIPLLHIAQEQFGWLPPEAIEEIADMLGIPRARV 60

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC 157
           Y VATFYT F  KP+G         +H+  CT T C L+ S+A+L+ ++KK 
Sbjct: 61  YGVATFYTQFFLKPVGR--------HHIRVCTGTACHLKGSEALLKALEKKL 104

Length = 160

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score =  135 bits (342), Expect = 8e-38
 Identities = 75/204 (36%), Positives = 102/204 (50%), Gaps = 47/204 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP+N   AE  I+ YP G + +AVIPLL  AQ Q GW+  +A+  VAD L++  +RV
Sbjct: 13  FAFTPENAAWAEKQITKYPEGRQASAVIPLLMRAQEQEGWVTRAAIEKVADMLDMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
            EVATFYT F  +P+G        + H+  C TTPC LR S+A++ V K K +       
Sbjct: 73  LEVATFYTQFQLQPVGT-------RAHIQVCGTTPCMLRGSEALMAVCKSKIHAHPHELN 125

Query: 159 ---------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                                + + +   +DL P+ +E+IID   AGK P   P      
Sbjct: 126 ADGTLSWEEVECLGACVNAPMVQIGKDYYEDLTPERLEEIIDAFAAGKGPVVKP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLTGE 218
            G Q GR+  A E    +TSLT E
Sbjct: 180 -GPQIGRY--ASEPAGGLTSLTEE 200

Length = 400

>gnl|CDD|131013 TIGR01958, nuoE_fam, NADH-quinone oxidoreductase, E subunit

 Score =  124 bits (313), Expect = 5e-36
 Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 8/101 (7%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
            E II+ YP   +R+A++P L +AQ Q GW+   A+  VA+ L +P + VYEVATFY+MF
Sbjct: 2   IEEIIAKYPDDQKRSAIMPALMIAQEQKGWVTPEAIAAVAEMLGIPPVWVYEVATFYSMF 61

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +P+G        +YHL  CT  PC LR S+A+L+ ++ K
Sbjct: 62  DTEPVG--------RYHLQVCTNVPCALRGSEALLKYLENK 94

This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria [Energy metabolism, Electron transport]. Length = 148

>gnl|CDD|236053 PRK07571, PRK07571, bidirectional hydrogenase complex protein HoxE; Reviewed

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 8/85 (9%)

Query: 71  AVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQ 130
           A+I +L  AQ   G+L    + YVA  L LP  RVY VATFY +F  KP GE        
Sbjct: 37  ALIEVLHKAQELFGYLERDLLLYVARQLKLPLSRVYGVATFYHLFSLKPSGEHTCVV--- 93

Query: 131 YHLNWCTTTPCWLRNSDAILEVIKK 155
                CT T C+++ S AILE ++ 
Sbjct: 94  -----CTGTACYVKGSAAILEDLEN 113

Length = 169

>gnl|CDD|239362 cd03064, TRX_Fd_NuoE, TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 31/79 (39%)

Query: 131 YHLNWCTTTPCWLRNSDAILEVIKKKCN----------------------------MMLE 162
           + +  CT T C LR ++A+LE ++KK                              MM+ 
Sbjct: 2   HVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMIN 61

Query: 163 RQ---DLEPKDMEQIIDDL 178
                 L P+ ++ I++ L
Sbjct: 62  DDVYGRLTPEKVDAILEAL 80

It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] cluster and also binds the NADH substrate and FMN. Length = 80

>gnl|CDD|180339 PRK05988, PRK05988, formate dehydrogenase subunit gamma; Validated

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 14/111 (12%)

Query: 48  FTPDNKKRAEAIISIYPVGHER--AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
             P +  R  AII+     H+    A++P+L   Q + G++P  A+  +A+ LNL +  V
Sbjct: 3   DEPWDAARIAAIIA----EHKHLEGALLPILHAIQDEFGYVPEDAVPVIAEALNLSRAEV 58

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           + V TFY  F   P G   +K         C    C     DA+    K +
Sbjct: 59  HGVITFYHDFRTHPPGRHVLK--------LCRAEACQAMGGDALAAHAKAR 101

Length = 156

>gnl|CDD|239278 cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 29/77 (37%)

Query: 131 YHLNWCTTTPCWLRNSDAILEVIKKK----------------C--------NMMLERQD- 165
           +H+  CT T C LR ++ +LE ++K+                C         +++     
Sbjct: 1   HHILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGV 60

Query: 166 ----LEPKDMEQIIDDL 178
               + P+D+E+I+++L
Sbjct: 61  WYGRVTPEDVEEIVEEL 77

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG3196|consensus	233		100.0
PRK12373	400	NADH dehydrogenase subunit E; Provisional	100.0
COG1905	160	NuoE NADH:ubiquinone oxidoreductase 24 kD subunit	100.0
PRK07571	169	bidirectional hydrogenase complex protein HoxE; Re	100.0
PRK05988	156	formate dehydrogenase subunit gamma; Validated	100.0
PRK07539	154	NADH dehydrogenase subunit E; Validated	100.0
TIGR01958	148	nuoE_fam NADH-quinone oxidoreductase, E subunit. T	100.0
PF01257	145	2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredo	100.0
cd03081	80	TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin	99.17
cd03083	80	TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd)	99.08
cd03082	72	TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxi	98.93
cd03064	80	TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) fami	98.79
cd02980	77	TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferr	98.47
cd03063	92	TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd)	97.2
cd03062	97	TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) f	96.01
cd00086	59	homeodomain Homeodomain; DNA binding domains invol	85.14
PF00046	57	Homeobox: Homeobox domain not present here.; Inter	84.6
PF06999	230	Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: I	83.79
smart00389	56	HOX Homeodomain. DNA-binding factors that are invo	81.34
PF14297	87	DUF4373: Domain of unknown function (DUF4373)	81.14

>KOG3196|consensus

Probab=100.00  E-value=1.2e-66  Score=453.28  Aligned_cols=194  Identities=58%  Similarity=0.982  Sum_probs=185.9

Q ss_pred             cccccccccccCcceeeccCCCCCCCCccccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy8528          17 VRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVAD   96 (240)
Q Consensus        17 ~~~~~~~~~~~~~~~~~h~~t~~~n~~~~f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~   96 (240)
                      .|.+..+...+ +.|||||||++||.+.+|+|++||++++++||++||.+++++||||+|+++|+|+||||.+||++||+
T Consensus         9 ~r~l~~~~v~r-~~l~~h~dt~en~~~~~feFt~eN~~rvkAIla~YP~~~k~~AliPLLDLAQRQ~GWlpiSAM~~VA~   87 (233)
T KOG3196|consen    9 IRRLHLAVVLR-QPLFVHRDTPENNPDLPFEFTPENQKRVKAILAIYPEGHKAGALIPLLDLAQRQHGWLPISAMNEVAE   87 (233)
T ss_pred             HHhhhHHHHhh-cccccccCCcccCCCCCcccCHHHHHHHHHHHHHCcccccccchhhhhHHHHHhcCCcCHHHHHHHHH
Confidence            36666666655 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCChhhHHHHhhhccCCccccCCcccccccccEEEEecCChhhhhcCHHHHHHHHHHHcCc-----------------
Q psy8528          97 FLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM-----------------  159 (240)
Q Consensus        97 ~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI-----------------  159 (240)
                      .+++|+++||||||||+||+++|+|        ||||+||++||||++|+++|.+++++.||+                 
T Consensus        88 ~~~v~~mrvyevatfYtmf~r~p~g--------Ky~v~VC~ttpC~lrg~d~i~ea~~k~lgi~~Gett~d~~Ftl~e~e  159 (233)
T KOG3196|consen   88 VLEVPPMRVYEVATFYTMFFRKPVG--------KYHVQVCTTTPCMLRGSDDILEACKKQLGIKVGETTKDGLFTLEEVE  159 (233)
T ss_pred             HHcCChHHHHHHHHHHHHhhccCCC--------CceEEEecCcHHhhhccHHHHHHHHHHhCccccccccccceeeecch
Confidence            9999999999999999999999999        999999999999999999999999999999                 


Q ss_pred             ---------e--Ee---ecCCCHHhHHHHHHHHhcCCCCCCCCCCCCCCCcCcCCCccccccCCCCCCccCCCCCCCCCC
Q psy8528         160 ---------M--LE---RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDS  225 (240)
Q Consensus       160 ---------m--v~---y~~Ltpe~i~~IL~~lk~g~~p~~gp~g~~~~~~~~~gr~~~~~e~~~g~t~l~~~~~~~~~~  225 (240)
                               |  ||   |||+|++++.+||++|++||.|++||         ||||+  +|||.||+|||+++|+||||+
T Consensus       160 ClGaCvnaPmi~IND~yyedlt~k~l~eIle~L~~~k~pp~Gp---------rngR~--a~eP~Gg~tsL~~~P~~PgF~  228 (233)
T KOG3196|consen  160 CLGACVNAPMIAINDDYYEDLTPKKLVEILEDLKAGKKPPAGP---------RNGRF--ASEPKGGLTSLKEEPKGPGFG  228 (233)
T ss_pred             hhhhhccCceeeecchhhccCCHHHHHHHHHHHhcCCCCCCCC---------CCCcc--ccCCCCCccccccCCCCCCch
Confidence                     3  33   99999999999999999999999999         99999  999999999999999999999


Q ss_pred             Ccccc
Q psy8528         226 KRDFC  230 (240)
Q Consensus       226 ~~~~~  230 (240)
                      +|+.+
T Consensus       229 ~q~~~  233 (233)
T KOG3196|consen  229 LQAAL  233 (233)
T ss_pred             hcccC
Confidence            99763

>PRK12373 NADH dehydrogenase subunit E; Provisional

Probab=100.00  E-value=6.8e-50  Score=377.86  Aligned_cols=160  Identities=48%  Similarity=0.773  Sum_probs=154.4

Q ss_pred             CCccccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCC
Q psy8528          42 LDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG  121 (240)
Q Consensus        42 ~~~~f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G  121 (240)
                      ++.+|+|++++++++++||++||.++++++|||+||++|+++||||+++|++||+.||||+++||||||||+||+++|+|
T Consensus         9 ~p~~f~f~~e~~~~i~~ii~~yp~~~~~salIplL~~~Qe~~GyIp~~ai~~VAe~Lgvp~~~V~eVATFYtmF~~~P~G   88 (400)
T PRK12373          9 QPDSFAFTPENAAWAEKQITKYPEGRQASAVIPLLMRAQEQEGWVTRAAIEKVADMLDMAYIRVLEVATFYTQFQLQPVG   88 (400)
T ss_pred             CCccccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhcccccCCC
Confidence            77899999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccc-EEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecCCCHH
Q psy8528         122 EERIKSILQ-YHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQDLEPK  169 (240)
Q Consensus       122 ~~~~~~~~K-~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~Ltpe  169 (240)
                              | |||+||+|++||++|+++|+++|+++|||                            |||   |++||++
T Consensus        89 --------k~~~I~VC~~t~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCLGaC~~APv~~Ind~~y~~LTpe  160 (400)
T PRK12373         89 --------TRAHIQVCGTTPCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECLGACVNAPMVQIGKDYYEDLTPE  160 (400)
T ss_pred             --------CceEEEEcCChHHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEECCEEeCCCCHH
Confidence                    9 89999999999999999999999999998                            666   9999999


Q ss_pred             hHHHHHHHHhcCCCCC--CCCCCCCCCCcCcCCCccccccCCCCCCccCCCCC
Q psy8528         170 DMEQIIDDLKAGKKPA--PGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPH  220 (240)
Q Consensus       170 ~i~~IL~~lk~g~~p~--~gp~g~~~~~~~~~gr~~~~~e~~~g~t~l~~~~~  220 (240)
                      ++++||++|++|+.|+  |||         |+||+  +|||.+|+|||+++..
T Consensus       161 ~v~~IL~~l~ag~~~~~~~g~---------~~~r~--~~~p~~g~t~l~~~~~  202 (400)
T PRK12373        161 RLEEIIDAFAAGKGPVVKPGP---------QIGRY--ASEPAGGLTSLTEEAG  202 (400)
T ss_pred             HHHHHHHHHhCCCCCCCCCCC---------CCCcc--ccCCCCCCcccCCCCC
Confidence            9999999999999988  898         99999  9999999999998643

>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]

Probab=100.00  E-value=1.5e-42  Score=293.93  Aligned_cols=128  Identities=47%  Similarity=0.862  Sum_probs=123.6

Q ss_pred             cccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCCccc
Q psy8528          45 KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEER  124 (240)
Q Consensus        45 ~f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~  124 (240)
                      .|.|++++.+++++++++||  ++|+||||+||++|+++||||++++++||+.||||+++||||||||+||+++|+|   
T Consensus         2 ~~~~~~~~~~~~~~~i~~yp--~~rsAlip~L~~aQ~~~G~l~~~ai~~iA~~L~i~~~~v~~VaTFY~~f~~~P~G---   76 (160)
T COG1905           2 TFAFSAENLELIEAIIAKYP--DKRSALIPLLHIAQEQFGWLPPEAIEEIADMLGIPRARVYGVATFYTQFFLKPVG---   76 (160)
T ss_pred             CcccchhHHHHHHHHHHHCc--cchhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHheeeeeeehhhccCcCC---
Confidence            35599999999999999999  6999999999999999999999999999999999999999999999999999999   


Q ss_pred             ccccccEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecCCCHHhHHH
Q psy8528         125 IKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQDLEPKDMEQ  173 (240)
Q Consensus       125 ~~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~Ltpe~i~~  173 (240)
                           ||+|+||+||+||++|+++|+++|+++|||                            |||   |+++|||++.+
T Consensus        77 -----r~~i~VC~~t~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~v~ClGaC~~AP~vmind~~~~~lt~e~l~e  151 (160)
T COG1905          77 -----RHHIRVCTGTACHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECLGACGQAPVVMINDDVYGRLTPEKLEE  151 (160)
T ss_pred             -----CeEEEEeCCcHHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEeeeeeecccccCCEEEECCchhccCCHHHHHH
Confidence                 999999999999999999999999999998                            777   99999999999


Q ss_pred             HHHHHhcCC
Q psy8528         174 IIDDLKAGK  182 (240)
Q Consensus       174 IL~~lk~g~  182 (240)
                      ||+++++++
T Consensus       152 il~~~~~~~  160 (160)
T COG1905         152 ILEKLKAKK  160 (160)
T ss_pred             HHHHHhcCC
Confidence            999999874

>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed

Probab=100.00  E-value=2.8e-39  Score=275.73  Aligned_cols=127  Identities=30%  Similarity=0.444  Sum_probs=122.3

Q ss_pred             CccccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCCc
Q psy8528          43 DVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE  122 (240)
Q Consensus        43 ~~~f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~  122 (240)
                      +....++++..+++++|+++||  +++++|||+||++|+++||||++++++||+.||||+++||||||||+||+++|+| 
T Consensus        11 ~~~~~~~~~~~~~i~~ii~~~~--~~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l~v~~a~V~gVatFY~~f~~~P~G-   87 (169)
T PRK07571         11 SATHPSGDKRFKVLEATMKRNQ--YRQDALIEVLHKAQELFGYLERDLLLYVARQLKLPLSRVYGVATFYHLFSLKPSG-   87 (169)
T ss_pred             CccCcCcHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHHHHHccccCcCCCC-
Confidence            4567899999999999999998  5899999999999999999999999999999999999999999999999999999 


Q ss_pred             ccccccccEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecCCCHHhH
Q psy8528         123 ERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQDLEPKDM  171 (240)
Q Consensus       123 ~~~~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~Ltpe~i  171 (240)
                             ||+|+||+|++|+++|+++|+++++++|||                            |||   |++||++++
T Consensus        88 -------k~~I~VC~g~aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~ClG~C~~AP~~~Vn~~~~~~lt~e~v  160 (169)
T PRK07571         88 -------EHTCVVCTGTACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCLGACGIAPAVVFDGKVAGKQTPESV  160 (169)
T ss_pred             -------CEEEEEcCChHHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecccCccCCCCeEEECCEEeCCCCHHHH
Confidence                   999999999999999999999999999998                            677   999999999


Q ss_pred             HHHHHHHh
Q psy8528         172 EQIIDDLK  179 (240)
Q Consensus       172 ~~IL~~lk  179 (240)
                      ++||++|+
T Consensus       161 ~~il~~~~  168 (169)
T PRK07571        161 LEKVQGWL  168 (169)
T ss_pred             HHHHHHHh
Confidence            99999985

>PRK05988 formate dehydrogenase subunit gamma; Validated

Probab=100.00  E-value=1.9e-38  Score=266.93  Aligned_cols=122  Identities=29%  Similarity=0.515  Sum_probs=116.5

Q ss_pred             CHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCCccccccc
Q psy8528          49 TPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI  128 (240)
Q Consensus        49 t~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~  128 (240)
                      +|...+++++|+++||  +++++|||+||++|+++||||++++++||+.||||+++||+|||||+||+++|+|       
T Consensus         4 ~~~~~~~i~~ii~~y~--~~~~~li~~L~~vQ~~~G~Ip~e~~~~iA~~l~v~~~~V~~vatFY~~f~~~p~G-------   74 (156)
T PRK05988          4 EPWDAARIAAIIAEHK--HLEGALLPILHAIQDEFGYVPEDAVPVIAEALNLSRAEVHGVITFYHDFRTHPPG-------   74 (156)
T ss_pred             chhHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhccCCCCCC-------
Confidence            4567788999999998  5899999999999999999999999999999999999999999999999999999       


Q ss_pred             ccEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecCCCHHhHHHHHHH
Q psy8528         129 LQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQDLEPKDMEQIIDD  177 (240)
Q Consensus       129 ~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~Ltpe~i~~IL~~  177 (240)
                       ||+|+||+|++|+++|+++|+++++++|||                            |||   |++||++++++||++
T Consensus        75 -k~~I~VC~~~~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~aP~~~in~~~~~~lt~~~~~~il~~  153 (156)
T PRK05988         75 -RHVLKLCRAEACQAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACSPAAMLDGEVHGRLDPQRLDALLAE  153 (156)
T ss_pred             -CEEEEEeCCchhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEECCEEeCCCCHHHHHHHHHH
Confidence             999999999999999999999999999998                            677   999999999999999


Q ss_pred             Hhc
Q psy8528         178 LKA  180 (240)
Q Consensus       178 lk~  180 (240)
                      +++
T Consensus       154 ~~~  156 (156)
T PRK05988        154 ARR  156 (156)
T ss_pred             hhC
Confidence            874

>PRK07539 NADH dehydrogenase subunit E; Validated

Probab=100.00  E-value=1.7e-37  Score=259.20  Aligned_cols=122  Identities=43%  Similarity=0.867  Sum_probs=117.2

Q ss_pred             CCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccc
Q psy8528          48 FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKS  127 (240)
Q Consensus        48 ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~  127 (240)
                      |+++..+++++|+++||  +++++|||+||++|+++||||+++|++||+.||+|+++||+|||||+||+++|+|      
T Consensus         2 ~~~~~~~~~~~i~~~~~--~~~~~ll~~L~~vQ~~~g~ip~~~~~~iA~~l~v~~~~v~~v~tFY~~f~~~p~g------   73 (154)
T PRK07539          2 LSAEELAAIEREIAKYP--RPRSAVIPALKIVQEQRGWVPDEAIEAVADYLGMPAIDVEEVATFYSMIFRQPVG------   73 (154)
T ss_pred             CCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHHHHHHHHhhhCcCCCC------
Confidence            78888999999999998  5899999999999999999999999999999999999999999999999999999      


Q ss_pred             cccEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecCCCHHhHHHHHH
Q psy8528         128 ILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQDLEPKDMEQIID  176 (240)
Q Consensus       128 ~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~Ltpe~i~~IL~  176 (240)
                        ||+|+||++++|+++|+++|+++|+++|||                            +||   |+++|++++++||+
T Consensus        74 --k~~I~VC~g~~C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~gPvv~V~~~~y~~vt~e~v~~il~  151 (154)
T PRK07539         74 --RHVIQVCTSTPCWLRGGEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNAPVVMINDDTYEDLTPEKIDELLD  151 (154)
T ss_pred             --CEEEEEcCCchHHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCCCEEEECCEEeCCCCHHHHHHHHH
Confidence              999999999999999999999999999995                            566   99999999999999


Q ss_pred             HHh
Q psy8528         177 DLK  179 (240)
Q Consensus       177 ~lk  179 (240)
                      +++
T Consensus       152 ~~~  154 (154)
T PRK07539        152 ELK  154 (154)
T ss_pred             hcC
Confidence            875

>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit

Probab=100.00  E-value=2.9e-37  Score=256.06  Aligned_cols=117  Identities=40%  Similarity=0.798  Sum_probs=111.0

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccccccEEEE
Q psy8528          55 RAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLN  134 (240)
Q Consensus        55 ~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~  134 (240)
                      ++++|+++||.+.++++|||+||++|+++||||++++++||+.||||+++||+|||||+||+++|+|        ||+|+
T Consensus         1 ~~~~i~~~~~~~~~~~~li~~L~~vQ~~~G~i~~~~~~~iA~~l~~~~~~v~~v~tFY~~f~~~p~g--------k~~I~   72 (148)
T TIGR01958         1 LIEEIIAKYPDDQKRSAIMPALMIAQEQKGWVTPEAIAAVAEMLGIPPVWVYEVATFYSMFDTEPVG--------RYHLQ   72 (148)
T ss_pred             ChHHHHHHCCCCCChhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHHHHHhHHhhcCcCCCC--------CEEEE
Confidence            4689999999534899999999999999999999999999999999999999999999999999999        99999


Q ss_pred             ecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecCCCHHhHHHHHHHHh
Q psy8528         135 WCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQDLEPKDMEQIIDDLK  179 (240)
Q Consensus       135 VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~Ltpe~i~~IL~~lk  179 (240)
                      ||++++|+++|+++|+++|+++||+                            |||   |+++|++++++||++++
T Consensus        73 VC~g~~C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~aP~v~V~~~~y~~vt~e~v~~il~~~~  148 (148)
T TIGR01958        73 VCTNVPCALRGSEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNAPVMMINDDYYEFLTPEKLDELLERYE  148 (148)
T ss_pred             EcCCchhhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCCCEEEECCEEeCCCCHHHHHHHHHhcC
Confidence            9999999999999999999999996                            666   99999999999999874

This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.

>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=100.00  E-value=4.9e-37  Score=253.95  Aligned_cols=114  Identities=36%  Similarity=0.754  Sum_probs=100.7

Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccccccEEEEe
Q psy8528          56 AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNW  135 (240)
Q Consensus        56 i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~V  135 (240)
                      |++||++||  +++++|||+||++|+++||||++++++||+.|+||+++||+|||||+||+++|.|        ||+|.|
T Consensus         1 i~~i~~~~~--~~~~~ll~~L~~~Q~~~g~i~~~~~~~iA~~l~i~~~~v~~v~tFY~~f~~~p~g--------k~~I~V   70 (145)
T PF01257_consen    1 IEEIIARYP--SKRSALLPILHEVQEEYGYIPEEALEEIAEALGIPPAEVYGVATFYSMFRLEPKG--------KHHIRV   70 (145)
T ss_dssp             -HHHHHTS----GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHHHSSSS-SSS----------SEEEEE
T ss_pred             ChHHHHHCC--CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHcccCCCC--------CcEEEe
Confidence            689999999  5899999999999999999999999999999999999999999999999999999        999999


Q ss_pred             cCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecCCCHHhHHHHHHHHh
Q psy8528         136 CTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQDLEPKDMEQIIDDLK  179 (240)
Q Consensus       136 C~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~Ltpe~i~~IL~~lk  179 (240)
                      |+|++|+++|+++|+++++++||+                            +||   |+++|||++++||++||
T Consensus        71 C~g~~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~ClG~C~~aP~v~V~~~~y~~vt~e~v~~il~~lk  145 (145)
T PF01257_consen   71 CTGTSCHLRGAEELLEALEEELGIKPGETTEDGKFTLEETGCLGACDQAPVVMVDGEWYGNVTPEKVDEILEELK  145 (145)
T ss_dssp             E-SHHHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSSSSGGGSSEEEECCCEEESSSCCHHHHHHHHH-
T ss_pred             CCCchHHhCCCHHHHHHHHHHhCCcccccCCCceEEEEECCCccccCCCCEEEECCEEECCCCHHHHHHHHHhcC
Confidence            999999999999999999999986                            677   99999999999999986

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....

>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH

Probab=99.17  E-value=4e-11  Score=90.26  Aligned_cols=49  Identities=18%  Similarity=0.514  Sum_probs=45.5

Q ss_pred             cEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecCCCHHhHHHHHHHH
Q psy8528         130 QYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQDLEPKDMEQIIDDL  178 (240)
Q Consensus       130 K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~Ltpe~i~~IL~~l  178 (240)
                      ||+|+||++++|+++|+++|+++++++|++                            +||   |+++|||++++||++|
T Consensus         1 ~~~i~vC~~~~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~ClG~C~~gP~~~v~~~~~~~~~~e~i~~il~~~   80 (80)
T cd03081           1 RHVLKLCRAEACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPAAMIDGEVHGRVDPEKFDALLAEL   80 (80)
T ss_pred             CeEEEEcCChHHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeecCccCCCCEEEECCEEECCCCHHHHHHHHHcC
Confidence            699999999999999999999999999985                            566   9999999999999864

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat

>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16

Probab=99.08  E-value=1.6e-10  Score=86.91  Aligned_cols=49  Identities=14%  Similarity=0.357  Sum_probs=45.2

Q ss_pred             cEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecCCCHHhHHHHHHHH
Q psy8528         130 QYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQDLEPKDMEQIIDDL  178 (240)
Q Consensus       130 K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~Ltpe~i~~IL~~l  178 (240)
                      ||+|+||++++|+++|+++|+++|+++|++                            +|+   |+++|++++++|++.+
T Consensus         1 ~~~i~vC~~~~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gClG~C~~~P~v~V~~~~y~~v~~~~v~~iv~~~   80 (80)
T cd03083           1 KYRIYLSDSITDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCTGLCDQGPALLINNRVFTRLTPGRIDQIAELI   80 (80)
T ss_pred             CEEEEEcCChHHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEeceecCcCCCCeEEECCEEECCCCHHHHHHHHhcC
Confidence            699999999999999999999999999985                            455   9999999999999864

HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved

>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens

Probab=98.93  E-value=1.8e-09  Score=80.41  Aligned_cols=47  Identities=9%  Similarity=0.328  Sum_probs=43.7

Q ss_pred             EEEEecCChhhhhcCHHHHHHHHHHHcCc--------------------eEe---ecCCCHHhHHHHHHH
Q psy8528         131 YHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------MLE---RQDLEPKDMEQIIDD  177 (240)
Q Consensus       131 ~~I~VC~~t~C~lrGs~~Il~~l~~~LgI--------------------mv~---y~~Ltpe~i~~IL~~  177 (240)
                      |+|+||++++|+++|+++|+++|+++|++                    +||   |+++|++++++++++
T Consensus         2 ~~I~vC~~~~C~~~Ga~~l~~~l~~~L~~~~v~l~~~~ClG~C~~gP~v~V~~~~~~~~t~~~i~~~~~~   71 (72)
T cd03082           2 LTVRVCDSLSCAMAGAEELLAALEAGLGPEGVRVVRAPCVGRCERAPAALVGQRPVDGATPAAVAAAVEA   71 (72)
T ss_pred             eEEEEcCChHHHHCCHHHHHHHHHHHhCCCeEEEEecCcCCccCCCCeEEECCEEeCCcCHHHHHHHHhc
Confidence            78999999999999999999999999997                    666   999999999999864

W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen

>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes

Probab=98.79  E-value=1e-08  Score=76.38  Aligned_cols=49  Identities=33%  Similarity=0.662  Sum_probs=44.1

Q ss_pred             cEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecCCCHHhHHHHHHHH
Q psy8528         130 QYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQDLEPKDMEQIIDDL  178 (240)
Q Consensus       130 K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~Ltpe~i~~IL~~l  178 (240)
                      ||+|.||.+++|+.+|++++++++++++++                            +|+   |+++|++++++|+++|
T Consensus         1 ~~~v~vC~~~~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~ClG~C~~gP~v~v~g~~y~~vt~~~i~~i~~~~   80 (80)
T cd03064           1 KHVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMINDDVYGRLTPEKVDAILEAL   80 (80)
T ss_pred             CEEEEECCCcHHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCcCcCCCCCEEEECCEEECCCCHHHHHHHHHhC
Confidence            689999999999999999999999998763                            344   9999999999999864

It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu

>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

Probab=98.47  E-value=2.2e-07  Score=67.63  Aligned_cols=47  Identities=30%  Similarity=0.636  Sum_probs=42.3

Q ss_pred             EEEEecCChhhhhcCHHHHHHHHHHHcCc------------------------eEe-----ecCCCHHhHHHHHHH
Q psy8528         131 YHLNWCTTTPCWLRNSDAILEVIKKKCNM------------------------MLE-----RQDLEPKDMEQIIDD  177 (240)
Q Consensus       131 ~~I~VC~~t~C~lrGs~~Il~~l~~~LgI------------------------mv~-----y~~Ltpe~i~~IL~~  177 (240)
                      |+|.||++++|+.+|+++|+++|++.++.                        +|+     |+++|++++++||++
T Consensus         1 ~~I~VC~~~~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg~C~~~P~v~i~~~~~~y~~v~~~~~~~il~~   76 (77)
T cd02980           1 HHILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGVWYGRVTPEDVEEIVEE   76 (77)
T ss_pred             CEEEEccCCCcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCcCcccCCCEEEEeCCCeEEccCCHHHHHHHHHh
Confidence            58999999999999999999999998764                        344     999999999999986

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.

>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH

Probab=97.20  E-value=0.00061  Score=53.51  Aligned_cols=48  Identities=13%  Similarity=0.194  Sum_probs=41.3

Q ss_pred             EEEecCChhhhhcCHHHHHHHHHHHcC-----c-----------------eE-------eecCCCHHhHHHHHHHHh
Q psy8528         132 HLNWCTTTPCWLRNSDAILEVIKKKCN-----M-----------------ML-------ERQDLEPKDMEQIIDDLK  179 (240)
Q Consensus       132 ~I~VC~~t~C~lrGs~~Il~~l~~~Lg-----I-----------------mv-------~y~~Ltpe~i~~IL~~lk  179 (240)
                      +|.||.+|.|...||++++++|++++.     +                 .|       -|+++|||++.+|+++.-
T Consensus         2 ~I~Vc~gT~ciAaGA~~V~~al~~ei~~~gl~v~v~~tGC~G~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~   78 (92)
T cd03063           2 RIYVPRDAAALALGADEVAEAIEAEAAARGLAATIVRNGSRGMYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGA   78 (92)
T ss_pred             EEEEeCChhhhhhCHHHHHHHHHHHHHHcCCeEEEEEecCceecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHh
Confidence            589999999999999999999999774     2                 12       199999999999998843

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c

>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity

Probab=96.01  E-value=0.016  Score=45.24  Aligned_cols=54  Identities=17%  Similarity=0.314  Sum_probs=41.9

Q ss_pred             EEEEecCC----hhhhhcCHHHHHHHHHHHcC------c----------------eE-----e---ecCCCHHhHHHHHH
Q psy8528         131 YHLNWCTT----TPCWLRNSDAILEVIKKKCN------M----------------ML-----E---RQDLEPKDMEQIID  176 (240)
Q Consensus       131 ~~I~VC~~----t~C~lrGs~~Il~~l~~~Lg------I----------------mv-----~---y~~Ltpe~i~~IL~  176 (240)
                      .+|.||++    ..|...| .+|+++|++++.      +                +|     +   |+.++|+++++|++
T Consensus         2 ~~ilVCth~rrd~~C~~~g-~~l~~~l~~~l~~~~~~~v~v~~~~clG~c~~gp~vvvyP~~~g~wy~~v~p~~v~~Iv~   80 (97)
T cd03062           2 PLVLVCTHGKRDKRCGICG-PPLAAELRAELPEHGPGGVRVWEVSHVGGHKFAGNVIIYPKGDGIWYGRVTPEHVPPIVD   80 (97)
T ss_pred             CEEEEeCCCCCCcChhhcC-HHHHHHHHHHHHHhCCCceEEEeCCcCCccCcCCEEEEEeCCCeeEEeecCHHHHHHHHH
Confidence            48999995    5698888 689999998874      3                33     3   77999999999998


Q ss_pred             HHhcCCCCC
Q psy8528         177 DLKAGKKPA  185 (240)
Q Consensus       177 ~lk~g~~p~  185 (240)
                      +.-.+..+-
T Consensus        81 ~hl~~g~~v   89 (97)
T cd03062          81 RLILGGKII   89 (97)
T ss_pred             HHhcCCcCC
Confidence            765554443

The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.

>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner

Probab=85.14  E-value=2.3  Score=28.71  Aligned_cols=38  Identities=13%  Similarity=0.061  Sum_probs=32.0

Q ss_pred             ccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH
Q psy8528          70 AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE  107 (240)
Q Consensus        70 salIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye  107 (240)
                      ..-+.+|..+-..+.|.+.+.++.+|+.+||+..+|..
T Consensus         9 ~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~   46 (59)
T cd00086           9 PEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKI   46 (59)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence            34567777777778899999999999999999998864

>PF00046 Homeobox: Homeobox domain not present here

Probab=84.60  E-value=1.9  Score=29.47  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528          72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY  106 (240)
Q Consensus        72 lIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy  106 (240)
                      -+.+|..+=+...|++.+.++.||..|||+..+|.
T Consensus        11 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~   45 (57)
T PF00046_consen   11 QLKVLEEYFQENPYPSKEEREELAKELGLTERQVK   45 (57)
T ss_dssp             HHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHH
T ss_pred             HHHHHHHHHHHhccccccccccccccccccccccc
Confidence            34555555556789999999999999999999985

; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....

>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity []

Probab=83.79  E-value=2.7  Score=36.72  Aligned_cols=57  Identities=19%  Similarity=0.333  Sum_probs=43.0

Q ss_pred             cEEEEecCCh----hhhhcCHHHHHHHHHHHcC--------c----------------eE-----e---ecCCCHHhHHH
Q psy8528         130 QYHLNWCTTT----PCWLRNSDAILEVIKKKCN--------M----------------ML-----E---RQDLEPKDMEQ  173 (240)
Q Consensus       130 K~~I~VC~~t----~C~lrGs~~Il~~l~~~Lg--------I----------------mv-----~---y~~Ltpe~i~~  173 (240)
                      +.+|-||+-.    -|...| ..|.+++++.+.        |                +.     +   |++|+|++++.
T Consensus       132 ~~~iLVCtHg~RD~rCg~~G-p~l~~~l~~~~~~~~l~~~~V~~iSHiGGHkfAgNvIiy~~~~p~g~wyGrv~p~~v~~  210 (230)
T PF06999_consen  132 KPLILVCTHGKRDKRCGILG-PPLARELEKELRERGLSRDRVWEISHIGGHKFAGNVIIYSKPKPDGIWYGRVTPEDVEG  210 (230)
T ss_pred             CCEEEEcCCCCcCCchhccc-HHHHHHHHHHhhhcCCccceEEEecccccceecCeEEEEecCCCcEEEEEeeCHHHHHH
Confidence            7899999854    788887 345555555432        2                22     2   89999999999


Q ss_pred             HHHH-HhcCCCCCCC
Q psy8528         174 IIDD-LKAGKKPAPG  187 (240)
Q Consensus       174 IL~~-lk~g~~p~~g  187 (240)
                      |++. +.+|+..+..
T Consensus       211 iv~~t~~~g~vi~~~  225 (230)
T PF06999_consen  211 IVDATILDGKVIPEL  225 (230)
T ss_pred             HHHHHHhCCcCcCcc
Confidence            9999 9999987764

>smart00389 HOX Homeodomain

Probab=81.34  E-value=3.6  Score=27.60  Aligned_cols=37  Identities=14%  Similarity=0.078  Sum_probs=30.2

Q ss_pred             cHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH
Q psy8528          71 AVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE  107 (240)
Q Consensus        71 alIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye  107 (240)
                      .-+.+|..+-..+-|.+.+.+..+|+.+|++..+|..
T Consensus        10 ~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~   46 (56)
T smart00389       10 EQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKV   46 (56)
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence            4566777776667799999999999999999887753

DNA-binding factors that are involved in the transcriptional regulation of key developmental processes

>PF14297 DUF4373: Domain of unknown function (DUF4373)

Probab=81.14  E-value=4.7  Score=30.49  Aligned_cols=65  Identities=18%  Similarity=0.240  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCC-CCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528          53 KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGW-LPISAMHYVADFLNLPKMRVYEVATFYTMFIRK  118 (240)
Q Consensus        53 ~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~-Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k  118 (240)
                      -.+++.+.++|.. .--+..+-+|-.+=++.|| ++-+.+..+|+.++++...|.+|+.=|..|+..
T Consensus        11 D~ki~~l~~~~G~-~G~~~y~~ll~~iy~~~~y~~~~~~~~~~a~~~~~~~~~v~~II~~~~LF~~~   76 (87)
T PF14297_consen   11 DPKIRRLMAEYGC-EGYGIYWYLLEYIYKQGGYYLWWDKLFLIARKLGVSEEYVEEIINEYGLFDIE   76 (87)
T ss_pred             CHHHHHHHHHcCC-chHHHHHHHHHHHHcCCCeEeeHHHHHHHHHHHCcCHHHHHHHHHHhCCcccC
Confidence            4678889999974 2345677788888777775 677779999999999999999999988788743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
2fug_2	181	Crystal Structure Of The Hydrophilic Domain Of Resp		3e-07

>pdb|2FUG|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F  D +   E   + YP    RAA++PLL   Q++ GW+    +  +A  +      V  
Sbjct: 3   FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMG 62
Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           VA+FY+ +   P G        +YHL  C T  C L  ++ +
Sbjct: 63  VASFYSYYQFVPTG--------KYHLQVCATLSCKLAGAEEL 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
3i9v_2	181	NADH-quinone oxidoreductase subunit 2; electron tr	5e-62
2auv_A	85	Potential NAD-reducing hydrogenase subunit; thiore	8e-07

>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2* Length = 181

 Score =  191 bits (487), Expect = 5e-62
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 40/173 (23%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F  D +   E   + YP    RAA++PLL   Q++ GW+    +  +A  +      V  
Sbjct: 3   FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMG 62

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK----------- 156
           VA+FY+ +   P G+        YHL  C T  C L  ++ + + + +            
Sbjct: 63  VASFYSYYQFVPTGK--------YHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPD 114

Query: 157 ---------CN-------MML-----ERQDLEPKDMEQIIDDLKAGKKPAPGP 188
                    C        ++        + +    +E ++  L+AGK+     
Sbjct: 115 GLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGKRLEEIE 167

>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans} Length = 85

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 8/39 (20%)

Query: 118 KPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            P G+        Y ++ C  T C+++ +D ++   K++
Sbjct: 2   VPKGK--------YPISVCMGTACFVKGADKVVHAFKEQ 32

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3i9v_2	181	NADH-quinone oxidoreductase subunit 2; electron tr	100.0
2auv_A	85	Potential NAD-reducing hydrogenase subunit; thiore	99.19
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	98.87

>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*

Probab=100.00  E-value=7.2e-42  Score=292.07  Aligned_cols=132  Identities=26%  Similarity=0.525  Sum_probs=124.7

Q ss_pred             ccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccc
Q psy8528          46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERI  125 (240)
Q Consensus        46 f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~  125 (240)
                      +.|++++.+++++||++||.++++++|||+||++|+++||||+++|++||+.|+||+++||||||||+||+++|+|    
T Consensus         1 m~~~~~~~~~i~~ii~~y~~~~~~~~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~~VatFY~~f~~~P~g----   76 (181)
T 3i9v_2            1 MGFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTG----   76 (181)
T ss_dssp             --CTTTCHHHHHHHHTTSCTTCCGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHTTCSSCCSSCCC----
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHHHHHhHHhhcCCCCCC----
Confidence            4699999999999999999777999999999999999999999999999999999999999999999999999999    


Q ss_pred             cccccEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe----ecCCCHHhHHH
Q psy8528         126 KSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE----RQDLEPKDMEQ  173 (240)
Q Consensus       126 ~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~----y~~Ltpe~i~~  173 (240)
                          ||+|+||++++|+++||++|+++|+++||+                            +||    |+++|||++++
T Consensus        77 ----k~~I~VC~gt~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V~~~~~y~~vt~e~v~~  152 (181)
T 3i9v_2           77 ----KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEA  152 (181)
T ss_dssp             ----SEEEEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSSSCCBCCCCHHHHHH
T ss_pred             ----CEEEEECCCchhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEECCEEEEcCCCHHHHHH
Confidence                999999999999999999999999999985                            455    99999999999


Q ss_pred             HHHHHhcCCCCC
Q psy8528         174 IIDDLKAGKKPA  185 (240)
Q Consensus       174 IL~~lk~g~~p~  185 (240)
                      ||++|++|+++.
T Consensus       153 Il~~l~~g~~ve  164 (181)
T 3i9v_2          153 LLAGLRAGKRLE  164 (181)
T ss_dssp             HHHHHHTTCCGG
T ss_pred             HHHHHHcCCChh
Confidence            999999998753

>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}

Probab=99.19  E-value=9.2e-12  Score=92.63  Aligned_cols=54  Identities=20%  Similarity=0.602  Sum_probs=49.0

Q ss_pred             cccCCcccccccccEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecC
Q psy8528         117 RKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQD  165 (240)
Q Consensus       117 ~kP~G~~~~~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~  165 (240)
                      ++|+|        ||+|.||++++|+.+||++|+++|+++|++                            +|+   |++
T Consensus         1 ~~p~g--------~~~I~VC~g~~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~~~~y~~   72 (85)
T 2auv_A            1 MVPKG--------KYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGEKVYGN   72 (85)
T ss_dssp             CCSCC--------SBCEECCCCHHHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEGGGCCCC
T ss_pred             CCCCC--------CEEEEECCCchHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEECCEEECC
Confidence            47889        999999999999999999999999999864                            555   999


Q ss_pred             CCHHhHHHHHHHH
Q psy8528         166 LEPKDMEQIIDDL  178 (240)
Q Consensus       166 Ltpe~i~~IL~~l  178 (240)
                      +|||++++||+++
T Consensus        73 vt~e~v~~il~~~   85 (85)
T 2auv_A           73 VTPGQVKKILAEY   85 (85)
T ss_dssp             SSSSHHHHHHHHC
T ss_pred             CCHHHHHHHHHhC
Confidence            9999999999863

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A

Probab=98.87  E-value=1.6e-09  Score=84.24  Aligned_cols=56  Identities=21%  Similarity=0.469  Sum_probs=48.3

Q ss_pred             ccEEEEecCC--------hhhhhcCHHHHHHHHHHHcCc-------------------------eE--e---ecCCCHHh
Q psy8528         129 LQYHLNWCTT--------TPCWLRNSDAILEVIKKKCNM-------------------------ML--E---RQDLEPKD  170 (240)
Q Consensus       129 ~K~~I~VC~~--------t~C~lrGs~~Il~~l~~~LgI-------------------------mv--~---y~~Ltpe~  170 (240)
                      +||+|.||++        ++|+.+||++|+++|+++|++                         +|  +   |+++|+++
T Consensus         2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P~~~~y~~vt~e~   81 (110)
T 1m2d_A            2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPED   81 (110)
T ss_dssp             -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCGGG
T ss_pred             CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEeCCEEEecCCHHH
Confidence            4899999999        899999999999999997643                         56  3   99999999


Q ss_pred             HHHHHHH-HhcCCCC
Q psy8528         171 MEQIIDD-LKAGKKP  184 (240)
Q Consensus       171 i~~IL~~-lk~g~~p  184 (240)
                      +++||++ +.+|+++
T Consensus        82 v~~il~~~l~~g~~v   96 (110)
T 1m2d_A           82 VDEIVEKHLKGGEPV   96 (110)
T ss_dssp             HHHHHHHTTTTSCCC
T ss_pred             HHHHHHHHHHCCcCh
Confidence            9999998 6777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d2fug21	178	c.47.1.21 (2:3-180) NADH-quinone oxidoreductase ch	7e-30

>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: NQO2-like
domain: NADH-quinone oxidoreductase chain 2, NQO2
species: Thermus thermophilus [TaxId: 274]

 Score =  107 bits (269), Expect = 7e-30
 Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 40/173 (23%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F  D +   E   + YP    RAA++PLL   Q++ GW+    +  +A  +      V  
Sbjct: 1   FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMG 60

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN--------- 158
           VA+FY+ +        +     +YHL  C T  C L  ++ + + + +            
Sbjct: 61  VASFYSYY--------QFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPD 112

Query: 159 -------------------MMLERQ----DLEPKDMEQIIDDLKAGKKPAPGP 188
                              + +  +     +    +E ++  L+AGK+     
Sbjct: 113 GLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGKRLEEIE 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d2fug21	178	NADH-quinone oxidoreductase chain 2, NQO2 {Thermus	100.0
d1m2da_	101	Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolic	98.41
d2craa1	58	Homeobox protein hox-b13 {Human (Homo sapiens) [Ta	81.47
d2e1oa1	57	Homeobox protein prh {Human (Homo sapiens) [TaxId:	81.45

>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: NQO2-like
domain: NADH-quinone oxidoreductase chain 2, NQO2
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.6e-42  Score=291.27  Aligned_cols=141  Identities=26%  Similarity=0.497  Sum_probs=131.4

Q ss_pred             CCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccc
Q psy8528          48 FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKS  127 (240)
Q Consensus        48 ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~  127 (240)
                      |++++.+.|++||++||.++++++|||+||++|+++||||+++|++||+.|+||+++||||||||+||+++|+|      
T Consensus         1 f~~~~~~~i~~ii~~Yp~~~~~~ali~~L~~iQ~~~Gyip~~al~~iA~~l~v~~a~V~~vatFY~~f~~~p~g------   74 (178)
T d2fug21           1 FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTG------   74 (178)
T ss_dssp             CTTTTHHHHHHHHHTSCSSCGGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHHHSSSSCSSCCC------
T ss_pred             CCHHHHHHHHHHHHHCCCccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHCCCHHHHHHHHHhcchhcccccc------
Confidence            77889999999999999878899999999999999999999999999999999999999999999999999999      


Q ss_pred             cccEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---e-cCCCHHhHHHHH
Q psy8528         128 ILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---R-QDLEPKDMEQII  175 (240)
Q Consensus       128 ~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y-~~Ltpe~i~~IL  175 (240)
                        ||+|+||++++|+++|+++|+++++++|||                            +||   | ++||++++++||
T Consensus        75 --k~~i~VC~~~~C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle~v~ClG~C~~APa~~In~~~y~~~lt~e~~~~il  152 (178)
T d2fug21          75 --KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALL  152 (178)
T ss_dssp             --SEEEEEECSHHHHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEEEESCCSCTTSSSCEECSSSSBCCSCCHHHHHHHH
T ss_pred             --cceeEecCchhhhhccchhhHHHHHhhcccccccccCCCCEEEEEeeccCccCCCCeEEEcCEEecCCCCHHHHHHHH
Confidence              999999999999999999999999999998                            566   5 789999999999


Q ss_pred             HHHhcCCCCCCCCCCCCCCCcCcCCCc
Q psy8528         176 DDLKAGKKPAPGPSGYTSGIGSQSGRF  202 (240)
Q Consensus       176 ~~lk~g~~p~~gp~g~~~~~~~~~gr~  202 (240)
                      ++|++|+.++..+     +.| ++||.
T Consensus       153 ~~lr~~~~~~~~~-----~~~-~~~~~  173 (178)
T d2fug21         153 AGLRAGKRLEEIE-----LPG-KCGHH  173 (178)
T ss_dssp             HHHHTTCCGGGCC-----CSS-CCCSS
T ss_pred             HHHHcCCCCCCCC-----CCC-CCCCc
Confidence            9999999887765     223 56666

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.41  E-value=1.3e-07  Score=71.05  Aligned_cols=54  Identities=22%  Similarity=0.506  Sum_probs=45.7

Q ss_pred             EEEecCCh--------hhhhcCHHHHHHHHHHHcCc-------------------------eEe-----ecCCCHHhHHH
Q psy8528         132 HLNWCTTT--------PCWLRNSDAILEVIKKKCNM-------------------------MLE-----RQDLEPKDMEQ  173 (240)
Q Consensus       132 ~I~VC~~t--------~C~lrGs~~Il~~l~~~LgI-------------------------mv~-----y~~Ltpe~i~~  173 (240)
                      ||.||+++        +|..+|+++++++++++|+.                         +|.     |+++|++++++
T Consensus         3 Hi~VC~~~r~~~~~~~~C~~~G~~~v~~~l~~~l~~~~~~~~~v~v~~tgClG~C~~gP~v~i~P~~~~Y~~v~~e~v~~   82 (101)
T d1m2da_           3 HVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPEDVDE   82 (101)
T ss_dssp             EEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCGGGHHH
T ss_pred             EEEEeCCCCCCCCCCCcchhcCHHHHHHHHHHHhhhhcCCCCcEEEEEccCCcccCCCceEEEcCCccEEecCCHHHHHH
Confidence            58999997        59999999999999988753                         342     99999999999


Q ss_pred             HHHH-HhcCCCCC
Q psy8528         174 IIDD-LKAGKKPA  185 (240)
Q Consensus       174 IL~~-lk~g~~p~  185 (240)
                      ||++ |..|+++.
T Consensus        83 Iv~~hl~~g~~ve   95 (101)
T d1m2da_          83 IVEKHLKGGEPVE   95 (101)
T ss_dssp             HHHHTTTTSCCCG
T ss_pred             HHHHHHHCCcCch
Confidence            9998 67777653

>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-b13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.47  E-value=1.2  Score=29.19  Aligned_cols=27  Identities=4%  Similarity=0.085  Sum_probs=23.0

Q ss_pred             HHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528          80 QRQHGWLPISAMHYVADFLNLPKMRVY  106 (240)
Q Consensus        80 Q~q~G~Lp~~am~~VA~~L~lp~~~Vy  106 (240)
                      =+.+.|.+.+....+|+.|||++.+|.
T Consensus        20 F~~~~yp~~~~r~~LA~~l~l~~~qV~   46 (58)
T d2craa1          20 YAANKFITKDKRRKISAATSLSERQIT   46 (58)
T ss_dssp             HHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred             HhhcCCCCHHHHHHHHHHcCCCHHHee
Confidence            334558999999999999999999885

>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein prh
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.45  E-value=1.2  Score=28.89  Aligned_cols=32  Identities=19%  Similarity=0.214  Sum_probs=25.3

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528          75 LLDLAQRQHGWLPISAMHYVADFLNLPKMRVY  106 (240)
Q Consensus        75 lL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy  106 (240)
                      +|..+=+.+.|++.+....+|+.|||++.+|.
T Consensus        14 ~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~   45 (57)
T d2e1oa1          14 ELEKKFETQKYLSPPERKRLAKMLQLSERQVK   45 (57)
T ss_dssp             HHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence            33333345669999999999999999999875