Psyllid ID: psy852
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 891 | 2.2.26 [Sep-21-2011] | |||||||
| P14173 | 480 | Aromatic-L-amino-acid dec | yes | N/A | 0.286 | 0.531 | 0.444 | 3e-67 | |
| O88533 | 480 | Aromatic-L-amino-acid dec | yes | N/A | 0.286 | 0.531 | 0.441 | 7e-67 | |
| P80041 | 486 | Aromatic-L-amino-acid dec | yes | N/A | 0.286 | 0.524 | 0.434 | 8e-67 | |
| P22781 | 480 | Aromatic-L-amino-acid dec | yes | N/A | 0.286 | 0.531 | 0.434 | 1e-66 | |
| P27718 | 487 | Aromatic-L-amino-acid dec | yes | N/A | 0.288 | 0.527 | 0.435 | 4e-66 | |
| P20711 | 480 | Aromatic-L-amino-acid dec | no | N/A | 0.286 | 0.531 | 0.424 | 9e-65 | |
| P48861 | 508 | Aromatic-L-amino-acid dec | N/A | N/A | 0.262 | 0.460 | 0.488 | 2e-64 | |
| Q05733 | 847 | Histidine decarboxylase O | no | N/A | 0.252 | 0.265 | 0.457 | 2e-63 | |
| P05031 | 510 | Aromatic-L-amino-acid dec | no | N/A | 0.286 | 0.5 | 0.419 | 2e-61 | |
| O96567 | 510 | Aromatic-L-amino-acid dec | N/A | N/A | 0.286 | 0.5 | 0.419 | 3e-61 |
| >sp|P14173|DDC_RAT Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 257 bits (656), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 133/299 (44%), Positives = 179/299 (59%), Gaps = 44/299 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ SASE V +LAAR + I +L+ P + + L+ KL+AY S +AHS VE+A ++
Sbjct: 144 IQGSASEATLVALLAARTKMIRQLQAASPELTQAALMEKLVAYTSDQAHSSVERAGLIGG 203
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC--------------- 572
V++K + D S+R A LR+ +++D+ G IPFFV TLGTTSC
Sbjct: 204 VKIKAIPSDGNYSMRAAALREALERDKAAGLIPFFVVVTLGTTSCCSFDNLLEVGPICNQ 263
Query: 573 ----------YRKS-----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
Y S G+E+ADSFN N +KWLL FD S +WV R LT
Sbjct: 264 EGVWLHIDAAYAGSAFICPEFRYLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLT 323
Query: 612 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668
A +DP+YL+H H+ + DYRHW IPL RRFRSLK+WFV R YG+ GLQ YIR+H +
Sbjct: 324 EAFNMDPVYLRHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVK 383
Query: 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727
L+ FE VR+DPRFEI +V LGLVCFRL+ N L N LL+ IN++ ++H+VP
Sbjct: 384 LSHEFESLVRQDPRFEICTEVILGLVCFRLKGSNQL-----NETLLQRINSAKKIHLVP 437
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Rattus norvegicus (taxid: 10116) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 8 |
| >sp|O88533|DDC_MOUSE Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 132/299 (44%), Positives = 178/299 (59%), Gaps = 44/299 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ SASE V +LAAR + I +L+ P + ++ KL+AY S +AHS VE+A ++
Sbjct: 144 IQGSASEATLVALLAARTKVIRQLQAASPEFTQAAIMEKLVAYTSDQAHSSVERAGLIGG 203
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC--------------- 572
++LK + D S+R + LR+ +++D+ G IPFFV TLGTTSC
Sbjct: 204 IKLKAVPSDGNFSMRASALREALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICNQ 263
Query: 573 ----------YRKS-----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
Y S G+E+ADSFN N +KWLL FD S +WV R LT
Sbjct: 264 EGVWLHIDAAYAGSAFICPEFRYLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLT 323
Query: 612 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668
A +DP+YL+H H+ + DYRHW IPL RRFRSLK+WFV R YG+ GLQ YIR+H E
Sbjct: 324 GAFNMDPVYLKHSHQDSGFITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVE 383
Query: 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727
L+ FE VR+DPRFEI +V LGLVCFRL+ N L N LL+ IN++ ++H+VP
Sbjct: 384 LSHEFESLVRQDPRFEICTEVILGLVCFRLKGSNEL-----NETLLQRINSAKKIHLVP 437
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P80041|DDC_PIG Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 130/299 (43%), Positives = 181/299 (60%), Gaps = 44/299 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ SASE V +LAAR + + +L+ P + +G +L KL+AY S +AHS VE+A ++
Sbjct: 144 IQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGG 203
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC--------------- 572
V+LK + D K ++R + L++ +++D+ G IPFFV TLGTTSC
Sbjct: 204 VKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE 263
Query: 573 ----------YRKS-----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
Y S G+E+ADSFN N +KWLL FD S +WV R LT
Sbjct: 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLT 323
Query: 612 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668
A +DP+YL+H H+G+ DYRHW +PL RRFRSLK+WFV R YG+ GLQ YIR+H +
Sbjct: 324 GAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQ 383
Query: 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727
L+ FE V +DPRFE+ +V LGLVCFRL+ + L N LLE IN++ ++H+VP
Sbjct: 384 LSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGL-----NEALLERINSARKIHLVP 437
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Sus scrofa (taxid: 9823) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P22781|DDC_CAVPO Aromatic-L-amino-acid decarboxylase OS=Cavia porcellus GN=DDC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/299 (43%), Positives = 180/299 (60%), Gaps = 44/299 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ SASE V +LAAR + I +L+ P + + ++ KL+AY S +AHS VE+A ++
Sbjct: 144 IQGSASEATLVALLAARTKVIRRLQAASPELTQAAIMEKLVAYASDQAHSSVERAGLIGG 203
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC--------------- 572
VR+K++ D ++R + LR+ +++D+ G IPFFV TLGTT+C
Sbjct: 204 VRMKLIPSDSNFAMRASALREALERDKAAGLIPFFVVATLGTTNCCSFDSLLEVGPICNQ 263
Query: 573 ----------YRKS-----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
Y S G+E+ADSFN N +KWLL FD S +WV R L
Sbjct: 264 EEMWLHIDAAYAGSAFICPEFRHLLDGVEFADSFNFNPHKWLLVNFDCSAMWVKQRTDLI 323
Query: 612 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668
A +DP+YL+HGH+ + DYRHW IPL RRFRSLK+WFV R YG+ GLQ +IR+H +
Sbjct: 324 GAFKLDPVYLKHGHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGIKGLQAHIRKHVQ 383
Query: 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727
LA FE VR+DPRFEI +V LGLVCFRL+ N L N LL+ IN++ ++H+VP
Sbjct: 384 LAHEFESLVRQDPRFEICMEVTLGLVCFRLKGSNQL-----NETLLKRINSARKIHLVP 437
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Cavia porcellus (taxid: 10141) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P27718|DDC_BOVIN Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 178/301 (59%), Gaps = 44/301 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ +ASE V +LAAR + L+ P + + ++ KL+AY S +AHS VEKA ++
Sbjct: 144 IQGTASEATLVALLAARTKVTRHLQAASPELMQAAIMEKLVAYASDQAHSSVEKAGLIGG 203
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC--------------- 572
VRLK + D K ++R + L++ +++D+ G IPFFV TLGTTSC
Sbjct: 204 VRLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE 263
Query: 573 ----------YRKS-----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
Y S G+E+ADSFN N +KWLL FD S +WV R LT
Sbjct: 264 EGLWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLT 323
Query: 612 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668
A +DP+YL+H H+ + DYRHW +PL RRFRSLK+WFV R YG+ GLQ YIR+H +
Sbjct: 324 GAFRLDPVYLRHSHQDSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQ 383
Query: 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728
L+ FE VR+D RFEI +V LGLVCFRL+ N L N LLE IN++ ++H+VP
Sbjct: 384 LSHAFEALVRQDTRFEICAEVILGLVCFRLKGSNKL-----NEALLESINSAKKIHLVPC 438
Query: 729 S 729
S
Sbjct: 439 S 439
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Bos taurus (taxid: 9913) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P20711|DDC_HUMAN Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 178/299 (59%), Gaps = 44/299 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ SASE V +LAAR + I +L+ P + + ++ KL+AY S +AHS VE+A ++
Sbjct: 144 IQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGG 203
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC--------------- 572
V+LK + D ++R + L++ +++D+ G IPFF+ TLGTT+C
Sbjct: 204 VKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNK 263
Query: 573 ----------YRKS-----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
Y S G+E+ADSFN N +KWLL FD S +WV R LT
Sbjct: 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLT 323
Query: 612 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668
A +DP YL+H H+ + DYRHW IPL RRFRSLK+WFV R YG+ GLQ YIR+H +
Sbjct: 324 GAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQ 383
Query: 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727
L+ FE VR+DPRFEI +V LGLVCFRL+ N + N LL+ IN++ ++H+VP
Sbjct: 384 LSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKV-----NEALLQRINSAKKIHLVP 437
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P48861|DDC_MANSE Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/250 (48%), Positives = 161/250 (64%), Gaps = 16/250 (6%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHWQ PRFHAYFP+ NSYPS++ADMLS AI CIGF+W ASP+CTELE ++LDWLG+ +G
Sbjct: 68 VTHWQSPRFHAYFPTANSYPSIVADMLSGAIACIGFTWIASPACTELEVVMLDWLGQMLG 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH 131
LP++FL A + + I+ + A LG + K+ H
Sbjct: 128 LPDQFL--------ARSGGEGGGVIQGTASEATFVALLGAKS--------RMMHRVKEQH 171
Query: 132 PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDET 191
P E +L KL+ YC+++AHS VE+A ++ V+L+ L+PD K LRG TLR+ + +D
Sbjct: 172 PEWTETDILGKLVGYCNQQAHSSVERAGLLGGVKLRSLKPDSKRRLRGDTLREAIDEDIR 231
Query: 192 MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251
G IPF+V TLGTTS C+FD L EIG V D+WLHVD AYAGS+FICPE+R FM G
Sbjct: 232 NGLIPFYVVATLGTTSSCAFDALDEIGDVCNASDIWLHVDAAYAGSAFICPEYRHFMKGV 291
Query: 252 TSFDNLHLSP 261
D+ + +P
Sbjct: 292 EKADSFNFNP 301
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Manduca sexta (taxid: 7130) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|Q05733|DCHS_DROME Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=2 SV=2 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 119/260 (45%), Positives = 162/260 (62%), Gaps = 35/260 (13%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
+THWQ P HAYFP+ NS PS+L DML+DAI C+GF+WA+SP+CTELE IV++WLGK IG
Sbjct: 68 ITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIG 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQN---IIVLTRGQK 128
LP+ FL QS GGGV+Q+ + ++ L G+
Sbjct: 128 LPDAFLHL-------------------------SSQSQGGGVLQTTASEATLVCLLAGRT 162
Query: 129 KI-------HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
+ HP + + ++L+AYCS +AHS VEKAA++ VR++ +E DD ++RG
Sbjct: 163 RAIQRFHERHPGYQDAEINARLVAYCSDQAHSSVEKAALIGLVRMRYIEADDDLAMRGKL 222
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
LR+ ++ D G +PF+V TLGTT CSFDNL EIG V E +WLHVD AYAGS+FIC
Sbjct: 223 LREAIEDDIKQGLVPFWVCATLGTTGSCSFDNLEEIGIVCAEHHLWLHVDAAYAGSAFIC 282
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR ++ G D++ +P
Sbjct: 283 PEFRTWLRGIERADSIAFNP 302
|
Required in photoreceptor transmitter synthesis. Drosophila melanogaster (taxid: 7227) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 177/298 (59%), Gaps = 43/298 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ +ASE V +L A+A+ + ++K++HP DE +L KL+ YCS +AHS VE+A ++
Sbjct: 179 IQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGG 238
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SC-------------- 572
V+L+ ++ ++ + +RGA L + ++QD G IPF+ TLGTT SC
Sbjct: 239 VKLRSVQSEN-HRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK 297
Query: 573 --------------------YRK-SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
YR +GIE ADSFN N +KW+L FD S +W+ D +
Sbjct: 298 HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVV 357
Query: 612 SALVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670
+A VDPLYL+H +G A DYRHW IPL RRFR+LKLWFV+R YG+ LQ +IRRHC A
Sbjct: 358 NAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFA 417
Query: 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728
K F D RFE++ ++ +GLVCFRL+ N + N LL+ IN G +H+VPA
Sbjct: 418 KQFGDLCVADSRFELAAEINMGLVCFRLKGSN-----ERNEALLKRINGRGHIHLVPA 470
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in life span. Drosophila melanogaster (taxid: 7227) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2 | Back alignment and function description |
|---|
Score = 237 bits (605), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 177/298 (59%), Gaps = 43/298 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ +ASE V +L A+A+ + ++K++HP DE +L KL+ YCS +AHS VE+A ++
Sbjct: 179 IQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGG 238
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SC-------------- 572
V+L+ ++ ++ + +RGA L + ++QD G IPF+ TLGTT SC
Sbjct: 239 VKLRSVQSEN-HRMRGAALEKAIEQDLAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK 297
Query: 573 --------------------YRK-SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
YR +GIE ADSFN N +KW+L FD S +W+ D +
Sbjct: 298 HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVV 357
Query: 612 SALVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670
+A VDPLYL+H +G A DYRHW IPL RRFR+LKLWFV+R YG+ LQ +IRRHC A
Sbjct: 358 NAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFA 417
Query: 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728
K F D RFE++ ++ +GLVCFRL+ N + N LL+ IN G +H+VPA
Sbjct: 418 KQFGDLCVADSRFELAAEINMGLVCFRLKGSN-----ERNEALLKRINGRGHIHLVPA 470
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in individual life span. Drosophila simulans (taxid: 7240) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 891 | ||||||
| 328713033 | 664 | PREDICTED: aromatic-L-amino-acid decarbo | 0.381 | 0.512 | 0.536 | 1e-117 | |
| 270013900 | 627 | hypothetical protein TcasGA2_TC012567 [T | 0.322 | 0.457 | 0.566 | 1e-107 | |
| 91090588 | 625 | PREDICTED: similar to aromatic amino aci | 0.322 | 0.459 | 0.567 | 1e-106 | |
| 195331887 | 638 | GM20861 [Drosophila sechellia] gi|194124 | 0.322 | 0.449 | 0.547 | 1e-100 | |
| 158285900 | 642 | AGAP007305-PA [Anopheles gambiae str. PE | 0.322 | 0.447 | 0.553 | 1e-100 | |
| 24586044 | 637 | tyrosine decarboxylase 2 [Drosophila mel | 0.322 | 0.450 | 0.547 | 1e-100 | |
| 195474161 | 632 | GE24598 [Drosophila yakuba] gi|194175461 | 0.322 | 0.454 | 0.547 | 1e-100 | |
| 194864046 | 637 | GG10812 [Drosophila erecta] gi|190662610 | 0.322 | 0.450 | 0.547 | 1e-100 | |
| 195028524 | 638 | GH20147 [Drosophila grimshawi] gi|193903 | 0.322 | 0.449 | 0.544 | 1e-100 | |
| 195121004 | 659 | GI20238 [Drosophila mojavensis] gi|19391 | 0.322 | 0.435 | 0.544 | 1e-99 |
| >gi|328713033|ref|XP_003244978.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 233/434 (53%), Positives = 279/434 (64%), Gaps = 94/434 (21%)
Query: 416 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-----VRS 470
P ++ L ++ + GL Q+++ E + + D EI N ++S
Sbjct: 109 PSCTELETIVLDWLGKAIGLP--QEFLTFSEEASTTIDSVRNDDSETEIHNGKGGGVLQS 166
Query: 471 SASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530
SASECIFVCMLAARAQAI +L+K+HPFV+EGVLLSKLMAYCSKE+HSCVEK AMMAFV+L
Sbjct: 167 SASECIFVCMLAARAQAIKRLRKLHPFVEEGVLLSKLMAYCSKESHSCVEKGAMMAFVKL 226
Query: 531 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC------------------ 572
+ILEPD+ NSLRGATLRQVM+QDE MG IPFFVSTTLGTTSC
Sbjct: 227 RILEPDENNSLRGATLRQVMEQDEAMGLIPFFVSTTLGTTSCCSFDNIPEIGQVCQQFET 286
Query: 573 --------YRKS-----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
Y S G++YADSFN+N NKWLLT FD SCLWV DR+KLT A
Sbjct: 287 VWLHVDAAYAGSAFICPEFRSLMNGVQYADSFNLNTNKWLLTNFDCSCLWVKDRFKLTCA 346
Query: 614 LVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673
LVVDPLYLQHG+ GA+DYRHWGIPLSRRFRSLKLWFV+RTYG+SGLQKYIR HC+LAK F
Sbjct: 347 LVVDPLYLQHGYAGAVDYRHWGIPLSRRFRSLKLWFVLRTYGISGLQKYIRHHCQLAKRF 406
Query: 674 EGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA----- 728
E VR D ++E+ NDV++GLVCFRL+ + ++ N+KLLE IN SG+LHMVP+
Sbjct: 407 ERLVRSDNKYEVLNDVKMGLVCFRLKDDP---TNKLNKKLLETINESGKLHMVPSLVHDK 463
Query: 729 -----------------------------------------SQEQNDEVFELQERKRKD- 746
+EQ DEVFEL ERK+KD
Sbjct: 464 YVIRFCVVAEHATEDDIDYAWKIIKETAVTVLYNEQELTEKREEQVDEVFELSERKKKDN 523
Query: 747 DLAYKRSFFVRMLG 760
DLAY+RSFFVRM+
Sbjct: 524 DLAYRRSFFVRMVS 537
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270013900|gb|EFA10348.1| hypothetical protein TcasGA2_TC012567 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/374 (56%), Positives = 251/374 (67%), Gaps = 87/374 (23%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+++SASEC+ V MLAARAQA+ +LK+ HPFV+EG+LLSKLMAYCSKEAHSCVEKAAM+ F
Sbjct: 145 IQTSASECVLVSMLAARAQALKRLKQQHPFVEEGLLLSKLMAYCSKEAHSCVEKAAMICF 204
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCY------------RK 575
V+L+ILEPD+K+SLRG+TL M++DETMG IPFFVSTTLGTTSC RK
Sbjct: 205 VKLRILEPDEKSSLRGSTLMMAMEEDETMGLIPFFVSTTLGTTSCCSFDNLNEIGPVCRK 264
Query: 576 -------------------------SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
G+EYADSFN N NKWLLT FD S +WV DR +L
Sbjct: 265 FPCVWLHVDGAYAGNAFICPELKYLLSGVEYADSFNTNPNKWLLTNFDCSTMWVRDRIRL 324
Query: 611 TSALVVDPLYLQHGHEGA-IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
TSALVVDPLYLQHG+ A IDYRHWG+PLSRRFRSLKLWFV+R+YG+SGLQKYIR H +L
Sbjct: 325 TSALVVDPLYLQHGYSDATIDYRHWGVPLSRRFRSLKLWFVLRSYGISGLQKYIRHHIKL 384
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
AK+FE V +D RFEI N+V+LGLVCFRL+ +D+ N KLL +INASG+LHMVPA+
Sbjct: 385 AKIFESLVLKDHRFEICNNVKLGLVCFRLKG-----SDKINEKLLCNINASGKLHMVPAN 439
Query: 730 --------------------------------------------QEQNDEVFELQERKRK 745
QEQ DEVFEL ERK+K
Sbjct: 440 VNDKYVIRFCVVAQNATEADIDYAWKVIKDFSEELFDSQALEKEQEQQDEVFELLERKKK 499
Query: 746 DDLAYKRSFFVRML 759
+ LA KRSFFVRM+
Sbjct: 500 ETLAQKRSFFVRMV 513
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91090588|ref|XP_972688.1| PREDICTED: similar to aromatic amino acid decarboxylase [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/372 (56%), Positives = 251/372 (67%), Gaps = 85/372 (22%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+++SASEC+ V MLAARAQA+ +LK+ HPFV+EG+LLSKLMAYCSKEAHSCVEKAAM+ F
Sbjct: 145 IQTSASECVLVSMLAARAQALKRLKQQHPFVEEGLLLSKLMAYCSKEAHSCVEKAAMICF 204
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCY------------RK 575
V+L+ILEPD+K+SLRG+TL M++DETMG IPFFVSTTLGTTSC RK
Sbjct: 205 VKLRILEPDEKSSLRGSTLMMAMEEDETMGLIPFFVSTTLGTTSCCSFDNLNEIGPVCRK 264
Query: 576 -------------------------SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
G+EYADSFN N NKWLLT FD S +WV DR +L
Sbjct: 265 FPCVWLHVDGAYAGNAFICPELKYLLSGVEYADSFNTNPNKWLLTNFDCSTMWVRDRIRL 324
Query: 611 TSALVVDPLYLQHGHEGA-IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
TSALVVDPLYLQHG+ A IDYRHWG+PLSRRFRSLKLWFV+R+YG+SGLQKYIR H +L
Sbjct: 325 TSALVVDPLYLQHGYSDATIDYRHWGVPLSRRFRSLKLWFVLRSYGISGLQKYIRHHIKL 384
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
AK+FE V +D RFEI N+V+LGLVCFRL+ +D+ N KLL +INASG+LHMVPA+
Sbjct: 385 AKIFESLVLKDHRFEICNNVKLGLVCFRLKG-----SDKINEKLLCNINASGKLHMVPAN 439
Query: 730 ------------------------------------------QEQNDEVFELQERKRKDD 747
+EQ DEVFEL ERK+K+
Sbjct: 440 VNDKYVIRFCVVAQNATEADIDYAWKVIKDFSEELFDSQALEKEQQDEVFELLERKKKET 499
Query: 748 LAYKRSFFVRML 759
LA KRSFFVRM+
Sbjct: 500 LAQKRSFFVRMV 511
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195331887|ref|XP_002032630.1| GM20861 [Drosophila sechellia] gi|194124600|gb|EDW46643.1| GM20861 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/367 (54%), Positives = 240/367 (65%), Gaps = 80/367 (21%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+++SASEC+ V MLAARAQA+ +LK HPFV+EG LLSKLMAYCSKEAHSCVEKAAM+ F
Sbjct: 145 IQTSASECVLVTMLAARAQALKRLKAQHPFVEEGHLLSKLMAYCSKEAHSCVEKAAMICF 204
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SCYRKS---------- 576
V+L+ILEPDD SLRG T+ + M++DE G +PFFVSTTLGTT SC +
Sbjct: 205 VKLRILEPDDDASLRGQTIYEAMEEDELQGLVPFFVSTTLGTTGSCAFDNLPEIGKQLQR 264
Query: 577 --------------------------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
+GIEYADSFN N NKWLLT FD S LWV DR +L
Sbjct: 265 FPGVWLHVDAAYAGNSFICPELKPLLKGIEYADSFNTNANKWLLTNFDCSTLWVRDRIRL 324
Query: 611 TSALVVDPLYLQHGH-EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
TSALVVDPLYL+HG+ + AIDYRHWG+PLSRRFRSLKLWFV+R+YG+SGLQ YIR H +L
Sbjct: 325 TSALVVDPLYLKHGYSDAAIDYRHWGVPLSRRFRSLKLWFVLRSYGISGLQHYIRHHIKL 384
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
AK FE V +D RFEI N V+LGLVCFRL+ +D+ N KLL IN SG+LHMVPAS
Sbjct: 385 AKRFEELVLKDKRFEICNQVKLGLVCFRLKG-----SDKLNEKLLSIINESGKLHMVPAS 439
Query: 730 -------------------------------------QEQNDEVFELQERKRKDDLAYKR 752
+EQ+DE+ E+ RK++D LA KR
Sbjct: 440 VGDRYIIRFCAVAQNATAEDIDYAWDIIVDFANELLEKEQHDELSEIMNRKKQDTLAQKR 499
Query: 753 SFFVRML 759
SFFVRM+
Sbjct: 500 SFFVRMV 506
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285900|ref|XP_308519.3| AGAP007305-PA [Anopheles gambiae str. PEST] gi|157020211|gb|EAA03914.4| AGAP007305-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/367 (55%), Positives = 238/367 (64%), Gaps = 80/367 (21%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+++SASEC+ V MLAARAQAI LK+ HPFV+EG LLSKLMAYCSKEAHSCVEKAAM++F
Sbjct: 145 IQTSASECVLVTMLAARAQAIKYLKQQHPFVEEGHLLSKLMAYCSKEAHSCVEKAAMISF 204
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SCYRKS---------- 576
V+L+ILEPD+K LR TL + M++DE G IPFFVSTTLGTT SC
Sbjct: 205 VKLRILEPDEKCCLRADTLIKAMEEDEQQGLIPFFVSTTLGTTGSCAFDDLAEIGEALQR 264
Query: 577 --------------------------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
+GI+YADSFN N NKWLLT FD S LWV DR +L
Sbjct: 265 FPSVWLHVDAAYAGNAFICPELKYLLKGIQYADSFNTNPNKWLLTNFDCSTLWVRDRIRL 324
Query: 611 TSALVVDPLYLQHGH-EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
TSALVVDPLYLQHG+ + AIDYRHWG+PLSRRFRSLKLWFV+R+YG+SGLQ YIR H EL
Sbjct: 325 TSALVVDPLYLQHGYTDSAIDYRHWGVPLSRRFRSLKLWFVLRSYGISGLQAYIRHHIEL 384
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
AK FE V +D RFE+ N+VRLGLVCFRL+ D+ N KLL INASG+LHMVPAS
Sbjct: 385 AKRFEALVLKDSRFEVCNEVRLGLVCFRLKG-----TDRINEKLLSSINASGKLHMVPAS 439
Query: 730 -------------------------------------QEQNDEVFELQERKRKDDLAYKR 752
+EQ DEV E+ +R++ LA KR
Sbjct: 440 VNDTYVIRFCAVAQNAKVEDIDYAWDVITDFASEILEKEQADEVSEIVDRRKTHTLAQKR 499
Query: 753 SFFVRML 759
SFFVRM+
Sbjct: 500 SFFVRMV 506
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24586044|ref|NP_724489.1| tyrosine decarboxylase 2 [Drosophila melanogaster] gi|21645112|gb|AAM70812.1| tyrosine decarboxylase 2 [Drosophila melanogaster] gi|229892359|gb|ACQ89823.1| MIP05841p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/367 (54%), Positives = 239/367 (65%), Gaps = 80/367 (21%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+++SASEC+ V MLAARAQA+ +LK HPFV+EG LLSKLMAYCSKEAHSCVEKAAM+ F
Sbjct: 145 IQTSASECVLVTMLAARAQALKRLKAQHPFVEEGHLLSKLMAYCSKEAHSCVEKAAMICF 204
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SCYRKS---------- 576
V+L+ILEPDD SLRG T+ + M++DE G +PFFVSTTLGTT SC +
Sbjct: 205 VKLRILEPDDDASLRGQTIYEAMEEDELQGLVPFFVSTTLGTTGSCAFDNLPEIGKQLQR 264
Query: 577 --------------------------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
+GIEYADSFN N NKWLLT FD S LWV DR +L
Sbjct: 265 FPGVWLHVDAAYAGNSFICPELKPLLKGIEYADSFNTNPNKWLLTNFDCSTLWVRDRIRL 324
Query: 611 TSALVVDPLYLQHGH-EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
TSALVVDPLYL+HG+ + AIDYRHWG+PLSRRFRSLKLWFV+R+YG+SGLQ YIR H +L
Sbjct: 325 TSALVVDPLYLKHGYSDAAIDYRHWGVPLSRRFRSLKLWFVLRSYGISGLQHYIRHHIKL 384
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
AK FE V +D RFEI N V+LGLVCFRL+ + L N KLL IN SG+LHMVPAS
Sbjct: 385 AKRFEELVLKDKRFEICNQVKLGLVCFRLKGSDKL-----NEKLLSIINESGKLHMVPAS 439
Query: 730 -------------------------------------QEQNDEVFELQERKRKDDLAYKR 752
+EQ+DE+ E+ RK++D LA KR
Sbjct: 440 VGDRYIIRFCAVAQNATAEDIDYAWDIIVDFANELLEKEQHDELSEIMNRKKQDTLAQKR 499
Query: 753 SFFVRML 759
SFFVRM+
Sbjct: 500 SFFVRMV 506
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195474161|ref|XP_002089360.1| GE24598 [Drosophila yakuba] gi|194175461|gb|EDW89072.1| GE24598 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/367 (54%), Positives = 239/367 (65%), Gaps = 80/367 (21%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+++SASEC+ V MLAARAQA+ +LK HPFV+EG LLSKLMAYCSKEAHSCVEKAAM+ F
Sbjct: 145 IQTSASECVLVTMLAARAQALKRLKAQHPFVEEGHLLSKLMAYCSKEAHSCVEKAAMICF 204
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SCYRKS---------- 576
V+L+ILEPDD SLRG T+ + M++DE G +PFFVSTTLGTT SC +
Sbjct: 205 VKLRILEPDDDASLRGQTIYEAMEEDELQGLVPFFVSTTLGTTGSCAFDNLPEIGKQLQR 264
Query: 577 --------------------------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
+GIEYADSFN N NKWLLT FD S LWV DR +L
Sbjct: 265 FPGVWLHVDAAYAGNSFICPELKPLLKGIEYADSFNTNPNKWLLTNFDCSTLWVRDRIRL 324
Query: 611 TSALVVDPLYLQHGH-EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
TSALVVDPLYL+HG+ + AIDYRHWG+PLSRRFRSLKLWFV+R+YG+SGLQ YIR H +L
Sbjct: 325 TSALVVDPLYLKHGYSDAAIDYRHWGVPLSRRFRSLKLWFVLRSYGISGLQHYIRHHIKL 384
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
AK FE V +D RFEI N V+LGLVCFRL+ + L N KLL IN SG+LHMVPAS
Sbjct: 385 AKRFEELVLKDKRFEICNQVKLGLVCFRLKGSDKL-----NEKLLSIINESGKLHMVPAS 439
Query: 730 -------------------------------------QEQNDEVFELQERKRKDDLAYKR 752
+EQ+DE+ E+ RK++D LA KR
Sbjct: 440 VGDRYIIRFCAVAQNATAEDIDYAWDIIVDFANELLEKEQHDELSEIMNRKKQDTLAQKR 499
Query: 753 SFFVRML 759
SFFVRM+
Sbjct: 500 SFFVRMV 506
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194864046|ref|XP_001970743.1| GG10812 [Drosophila erecta] gi|190662610|gb|EDV59802.1| GG10812 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/367 (54%), Positives = 240/367 (65%), Gaps = 80/367 (21%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+++SASEC+ V MLAARAQA+ +LK HPFV+EG LLSKLMAYCSKEAHSCVEKAAM+ F
Sbjct: 145 IQTSASECVLVTMLAARAQALKRLKAQHPFVEEGHLLSKLMAYCSKEAHSCVEKAAMICF 204
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SCYRKS---------- 576
V+L+ILEPDD SLRG T+ + M++DE G +PFFVSTTLGTT SC +
Sbjct: 205 VKLRILEPDDDASLRGQTIYEAMEEDELQGLVPFFVSTTLGTTGSCAFDNLPEIGKQLQR 264
Query: 577 --------------------------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
+GIEYADSFN N NKWLLT FD S LWV DR +L
Sbjct: 265 FPGVWLHVDAAYAGNSFICPELKPLLKGIEYADSFNTNPNKWLLTNFDCSTLWVRDRIRL 324
Query: 611 TSALVVDPLYLQHGH-EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
TSALVVDPLYL+HG+ + AIDYRHWG+PLSRRFRSLKLWFV+R+YG+SGLQ YIR H +L
Sbjct: 325 TSALVVDPLYLKHGYSDAAIDYRHWGVPLSRRFRSLKLWFVLRSYGISGLQHYIRHHIKL 384
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
AK FE V +D RFEI N V+LGLVCFRL+ +D+ N KLL IN SG+LHMVPAS
Sbjct: 385 AKRFEELVLKDKRFEICNQVKLGLVCFRLKG-----SDKLNEKLLSIINESGKLHMVPAS 439
Query: 730 -------------------------------------QEQNDEVFELQERKRKDDLAYKR 752
+EQ+DE+ E+ RK++D LA KR
Sbjct: 440 VGDRYIIRFCAVAQNATAEDIDYAWDIIVDFANELLEKEQHDELSEIMNRKKQDTLAQKR 499
Query: 753 SFFVRML 759
SFFVRM+
Sbjct: 500 SFFVRMV 506
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195028524|ref|XP_001987126.1| GH20147 [Drosophila grimshawi] gi|193903126|gb|EDW01993.1| GH20147 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/367 (54%), Positives = 240/367 (65%), Gaps = 80/367 (21%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+++SASEC+ V MLAARAQA+ +LK HPFV+EG LLSKLMAYCSKEAHSCVEKAAM+ F
Sbjct: 145 IQTSASECVLVTMLAARAQALKRLKAQHPFVEEGHLLSKLMAYCSKEAHSCVEKAAMICF 204
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SCYRKS---------- 576
V+L+ILEPD+ SLRG T+ + M++DE G +PFFVSTTLGTT SC +
Sbjct: 205 VKLRILEPDENASLRGQTIGEAMEEDELQGLVPFFVSTTLGTTGSCSFDNLPEIGSQLKK 264
Query: 577 --------------------------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
+GIEYADSFN N NKWLLT FD S LWV DR +L
Sbjct: 265 FPCVWLHVDAAYAGNSFICPELKPLLKGIEYADSFNTNPNKWLLTNFDCSTLWVRDRIRL 324
Query: 611 TSALVVDPLYLQHGH-EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
TSALVVDPLYL+HG+ + AIDYRHWG+PLSRRFRSLKLWFV+R+YG+SGLQ YIR H +L
Sbjct: 325 TSALVVDPLYLKHGYSDAAIDYRHWGVPLSRRFRSLKLWFVLRSYGISGLQHYIRHHIKL 384
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
AK FE V +D RFEI N V+LGLVCFRL+ +D+ N KLL IN SG+LHMVPAS
Sbjct: 385 AKRFEELVLKDKRFEICNQVKLGLVCFRLKG-----SDKLNEKLLSTINESGKLHMVPAS 439
Query: 730 -------------------------------------QEQNDEVFELQERKRKDDLAYKR 752
+EQ+DE+ E+ RK++D LA KR
Sbjct: 440 VNERYIIRFCAVAQNATAEDIDYAWDIIVDFANELLEKEQHDEITEIINRKKQDTLAQKR 499
Query: 753 SFFVRML 759
SFFVRM+
Sbjct: 500 SFFVRMV 506
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195121004|ref|XP_002005011.1| GI20238 [Drosophila mojavensis] gi|193910079|gb|EDW08946.1| GI20238 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 200/367 (54%), Positives = 239/367 (65%), Gaps = 80/367 (21%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+++SASEC+ V MLAARAQA+ +LK HPFV+EG LLSKLMAYCSKEAHSCVEKAAM+ F
Sbjct: 145 IQTSASECVLVTMLAARAQALKRLKAQHPFVEEGHLLSKLMAYCSKEAHSCVEKAAMICF 204
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SCYRKS---------- 576
V+L+ILEPD+ SLRG T+ + M++DE G +PFFVSTTLGTT SC +
Sbjct: 205 VKLRILEPDENASLRGQTVGEAMEEDELQGLVPFFVSTTLGTTGSCAFDNLPEIGNELKK 264
Query: 577 --------------------------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
+GIEYADSFN N NKWLLT FD S LWV DR +L
Sbjct: 265 FPCVWLHVDAAYAGNSFICPELKPLLKGIEYADSFNTNPNKWLLTNFDCSTLWVRDRIRL 324
Query: 611 TSALVVDPLYLQHGH-EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
TSALVVDPLYL+HG+ + AIDYRHWG+PLSRRFRSLKLWFV+R+YG+SGLQ YIR H +L
Sbjct: 325 TSALVVDPLYLKHGYSDAAIDYRHWGVPLSRRFRSLKLWFVLRSYGISGLQHYIRHHIKL 384
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
AK FE V +D RFEI N V+LGLVCFRL+ + L N KLL IN SG+LHMVPAS
Sbjct: 385 AKRFEELVLKDKRFEICNQVKLGLVCFRLKGTDKL-----NEKLLSAINESGKLHMVPAS 439
Query: 730 -------------------------------------QEQNDEVFELQERKRKDDLAYKR 752
+EQ+DE+ E+ RK++D LA KR
Sbjct: 440 VNERYIIRFCAVAQNATAEDIDYAWDTIVDFANELLEKEQHDEITEIINRKKQDTLAQKR 499
Query: 753 SFFVRML 759
SFFVRM+
Sbjct: 500 SFFVRMV 506
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 891 | ||||||
| FB|FBgn0050446 | 637 | Tdc2 "Tyrosine decarboxylase 2 | 0.252 | 0.353 | 0.597 | 5.6e-143 | |
| WB|WBGene00006562 | 705 | tdc-1 [Caenorhabditis elegans | 0.251 | 0.317 | 0.594 | 2e-130 | |
| UNIPROTKB|P80041 | 486 | DDC "Aromatic-L-amino-acid dec | 0.251 | 0.460 | 0.480 | 4.6e-107 | |
| UNIPROTKB|P20711 | 480 | DDC "Aromatic-L-amino-acid dec | 0.251 | 0.466 | 0.457 | 2.3e-105 | |
| UNIPROTKB|I3L7F0 | 486 | DDC "Aromatic-L-amino-acid dec | 0.251 | 0.460 | 0.476 | 2e-103 | |
| UNIPROTKB|F1PFV0 | 480 | DDC "Uncharacterized protein" | 0.251 | 0.466 | 0.476 | 2e-103 | |
| UNIPROTKB|E1BV90 | 485 | DDC "Uncharacterized protein" | 0.262 | 0.482 | 0.448 | 3.7e-103 | |
| UNIPROTKB|P27718 | 487 | DDC "Aromatic-L-amino-acid dec | 0.251 | 0.459 | 0.480 | 1.2e-102 | |
| RGD|2494 | 480 | Ddc "dopa decarboxylase (aroma | 0.251 | 0.466 | 0.473 | 2.8e-102 | |
| MGI|MGI:94876 | 480 | Ddc "dopa decarboxylase" [Mus | 0.251 | 0.466 | 0.465 | 9e-102 |
| FB|FBgn0050446 Tdc2 "Tyrosine decarboxylase 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 5.6e-143, Sum P(3) = 5.6e-143
Identities = 156/261 (59%), Positives = 184/261 (70%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHWQHPRFHAYFP+GNS+PS+L DML D IGCIGFSWAASP+CTELETIVLDWLGKAIG
Sbjct: 68 VTHWQHPRFHAYFPAGNSFPSILGDMLGDGIGCIGFSWAASPACTELETIVLDWLGKAIG 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ-SVQNIIVLT----RG 126
LP+ FL K +T GGGVIQ S +++T R
Sbjct: 128 LPDHFLAL----KEGST---------------------GGGVIQTSASECVLVTMLAARA 162
Query: 127 Q--KKI---HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
Q K++ HPFV+EG LLSKLMAYCSKEAHSCVEKAAM+ FV+L+ILEPDD SLRG T
Sbjct: 163 QALKRLKAQHPFVEEGHLLSKLMAYCSKEAHSCVEKAAMICFVKLRILEPDDDASLRGQT 222
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFD-VWLHVDGAYAGSSFI 240
+ + M++DE G +PFFVSTTLGTT C+FDNL EIG + F VWLHVD AYAG+SFI
Sbjct: 223 IYEAMEEDELQGLVPFFVSTTLGTTGSCAFDNLPEIGKQLQRFPGVWLHVDAAYAGNSFI 282
Query: 241 CPEFRPFMNGKTSFDNLHLSP 261
CPE +P + G D+ + +P
Sbjct: 283 CPELKPLLKGIEYADSFNTNP 303
|
|
| WB|WBGene00006562 tdc-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 2.0e-130, Sum P(2) = 2.0e-130
Identities = 142/239 (59%), Positives = 172/239 (71%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
+THWQHPRFHAYFP+GNS+PS++ADMLSDAIGC+GFSWAA P+ TELE I+LDW GK IG
Sbjct: 144 ITHWQHPRFHAYFPAGNSFPSIIADMLSDAIGCVGFSWAACPAMTELELIMLDWFGKMIG 203
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH 131
LP +FL GK I+ + N L V+ +++
Sbjct: 204 LPAEFLPLTENGKGGGV-------IQSSASECNFVTLLAA-------RFEVMKELRQRF- 248
Query: 132 PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDET 191
PFV+EG+LLSKL+AYCSKEAHS VEKA M+ V+L+ILE D K LRG TLR +Q+D
Sbjct: 249 PFVEEGLLLSKLIAYCSKEAHSSVEKACMIGMVKLRILETDSKFRLRGDTLRNAIQEDRN 308
Query: 192 MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250
+G IPFFVSTTLGTTSCCSFD L+EIGP+ KE ++WLHVD AY+GS+FICPEFRP MNG
Sbjct: 309 LGLIPFFVSTTLGTTSCCSFDVLSEIGPICKENELWLHVDAAYSGSAFICPEFRPLMNG 367
|
|
| UNIPROTKB|P80041 DDC "Aromatic-L-amino-acid decarboxylase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 603 (217.3 bits), Expect = 4.6e-107, Sum P(2) = 4.6e-107
Identities = 125/260 (48%), Positives = 167/260 (64%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET+++DWLGK +
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQ 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVLTRGQK 128
LPE FL G+ A + GGGVIQ S ++ L +
Sbjct: 128 LPEAFLA----GE------------------AGE----GGGVIQGSASEATLVALLAART 161
Query: 129 KI-------HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
K+ P + +G +L KL+AY S +AHS VE+A ++ V+LK + D K ++R +
Sbjct: 162 KVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASA 221
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
L++ +++D+ G IPFFV TLGTTSCCSFDNL E+GP+ E D+WLHVD AYAGS+FIC
Sbjct: 222 LQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFIC 281
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR +NG D+ + +P
Sbjct: 282 PEFRHLLNGVEFADSFNFNP 301
|
|
| UNIPROTKB|P20711 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 2.3e-105, Sum P(2) = 2.3e-105
Identities = 119/260 (45%), Positives = 164/260 (63%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET+++DWLGK +
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLE 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVLTRGQK 128
LP+ FL N+ GGGVIQ S ++ L +
Sbjct: 128 LPKAFL--------------------------NEKAGEGGGVIQGSASEATLVALLAART 161
Query: 129 K-IH------PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
K IH P + + ++ KL+AY S +AHS VE+A ++ V+LK + D ++R +
Sbjct: 162 KVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASA 221
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
L++ +++D+ G IPFF+ TLGTT+CCSFDNL E+GP+ + D+WLHVD AYAGS+FIC
Sbjct: 222 LQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFIC 281
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR +NG D+ + +P
Sbjct: 282 PEFRHLLNGVEFADSFNFNP 301
|
|
| UNIPROTKB|I3L7F0 DDC "Aromatic-L-amino-acid decarboxylase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 2.0e-103, Sum P(2) = 2.0e-103
Identities = 124/260 (47%), Positives = 161/260 (61%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET+++DWLGK +
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQ 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQN---IIVLTRGQK 128
LPE FL G+ A + GGGVIQ +I L ++
Sbjct: 128 LPEAFLA----GE------------------AGE----GGGVIQGKARKAKLISLCASRR 161
Query: 129 KI-------HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
KI P G L K Y S +AHS VE+A ++ V+LK + D K ++R +
Sbjct: 162 KIGRRLQLREPPYATGAPLEKGKIYPSGQAHSSVERAGLIGGVKLKAIPSDGKFAMRASA 221
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
L++ +++D+ G IPFFV TLGTTSCCSFDNL E+GP+ E D+WLHVD AYAGS+FIC
Sbjct: 222 LQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFIC 281
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR +NG D+ + +P
Sbjct: 282 PEFRHLLNGVEFADSFNFNP 301
|
|
| UNIPROTKB|F1PFV0 DDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 2.0e-103, Sum P(2) = 2.0e-103
Identities = 124/260 (47%), Positives = 165/260 (63%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFPS NSYP++LAD+L AIGCIGFSWAASP+CTELET+++DWLGK +
Sbjct: 68 VTHWHSPFFFAYFPSANSYPALLADILCGAIGCIGFSWAASPACTELETVMMDWLGKMLK 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVLTRGQK 128
LPE FL A Q GGGVIQ S ++ L +
Sbjct: 128 LPEAFL-------------------------AGQVGE-GGGVIQGSASEATLVALLAART 161
Query: 129 KI-------HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
K+ P + +G ++ KL+AY S +AHS VE+A ++ V+LK + D K ++R +
Sbjct: 162 KVTRRLQAASPGLTQGAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASA 221
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
L++ +++D+ G IPFFV TLGTTSCCSFDNL E+GP+ + D+WLH+D AYAGSSFIC
Sbjct: 222 LQEALERDKAEGLIPFFVVATLGTTSCCSFDNLLEVGPICNKEDMWLHIDAAYAGSSFIC 281
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR +NG D+ + +P
Sbjct: 282 PEFRHLLNGVEFADSFNFNP 301
|
|
| UNIPROTKB|E1BV90 DDC "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 3.7e-103, Sum P(2) = 3.7e-103
Identities = 112/250 (44%), Positives = 165/250 (66%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFPS +S+P++LADML IGC+GFSWAASP+CTELET++LDWLGK I
Sbjct: 68 VTHWHSPYFFAYFPSASSFPALLADMLCGGIGCVGFSWAASPACTELETVMLDWLGKMIS 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH 131
LPE+FL G++ I + + A L ++++ + R +K
Sbjct: 128 LPEEFLA----GRDGQGGGVIQGSASEATLVA-----LLAARTKTIRRV----RSEK--- 171
Query: 132 PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDET 191
P + E ++ +L+AY S +AHS VE+AA+++ V++K + DD ++ G+ L++++ +D+
Sbjct: 172 PELTEADIMGRLVAYASDQAHSSVERAALISGVKMKSVPSDDTFAVHGSALKKILDEDKA 231
Query: 192 MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251
G IPFF TLGTT CCSFD L E+GP+ + ++W+H+D AYAGS+FICPEFR F+NG
Sbjct: 232 SGLIPFFFCATLGTTPCCSFDKLLELGPICNKENIWMHIDAAYAGSAFICPEFRHFLNGV 291
Query: 252 TSFDNLHLSP 261
D+ + +P
Sbjct: 292 EFADSFNFNP 301
|
|
| UNIPROTKB|P27718 DDC "Aromatic-L-amino-acid decarboxylase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
Identities = 125/260 (48%), Positives = 166/260 (63%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET+++DWLGK +
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQ 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVLTRGQK 128
LPE FL G+ A + GGGVIQ S ++ L +
Sbjct: 128 LPEAFLA----GE------------------AGE----GGGVIQGTASEATLVALLAART 161
Query: 129 KI--H-----PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
K+ H P + + ++ KL+AY S +AHS VEKA ++ VRLK + D K ++R +
Sbjct: 162 KVTRHLQAASPELMQAAIMEKLVAYASDQAHSSVEKAGLIGGVRLKAIPSDGKFAMRASA 221
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
L++ +++D+ G IPFFV TLGTTSCCSFDNL E+GP+ E +WLHVD AYAGS+FIC
Sbjct: 222 LQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEGLWLHVDAAYAGSAFIC 281
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR +NG D+ + +P
Sbjct: 282 PEFRHLLNGVEFADSFNFNP 301
|
|
| RGD|2494 Ddc "dopa decarboxylase (aromatic L-amino acid decarboxylase)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.8e-102, Sum P(2) = 2.8e-102
Identities = 123/260 (47%), Positives = 164/260 (63%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET+++DWLGK +
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLE 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVLTRGQK 128
LPE FL G+ A + GGGVIQ S ++ L +
Sbjct: 128 LPEAFLA----GR------------------AGE----GGGVIQGSASEATLVALLAART 161
Query: 129 KI-------HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
K+ P + + L+ KL+AY S +AHS VE+A ++ V++K + D S+R A
Sbjct: 162 KMIRQLQAASPELTQAALMEKLVAYTSDQAHSSVERAGLIGGVKIKAIPSDGNYSMRAAA 221
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
LR+ +++D+ G IPFFV TLGTTSCCSFDNL E+GP+ + VWLH+D AYAGS+FIC
Sbjct: 222 LREALERDKAAGLIPFFVVVTLGTTSCCSFDNLLEVGPICNQEGVWLHIDAAYAGSAFIC 281
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR +NG D+ + +P
Sbjct: 282 PEFRYLLNGVEFADSFNFNP 301
|
|
| MGI|MGI:94876 Ddc "dopa decarboxylase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 9.0e-102, Sum P(2) = 9.0e-102
Identities = 121/260 (46%), Positives = 163/260 (62%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET+++DWLGK +
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLE 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVLTRGQK 128
LPE FL G+ A + GGGVIQ S ++ L +
Sbjct: 128 LPEAFLA----GR------------------AGE----GGGVIQGSASEATLVALLAART 161
Query: 129 KI-------HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
K+ P + ++ KL+AY S +AHS VE+A ++ ++LK + D S+R +
Sbjct: 162 KVIRQLQAASPEFTQAAIMEKLVAYTSDQAHSSVERAGLIGGIKLKAVPSDGNFSMRASA 221
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
LR+ +++D+ G IPFFV TLGTTSCCSFDNL E+GP+ + VWLH+D AYAGS+FIC
Sbjct: 222 LREALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICNQEGVWLHIDAAYAGSAFIC 281
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR +NG D+ + +P
Sbjct: 282 PEFRYLLNGVEFADSFNFNP 301
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 891 | |||
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 1e-76 | |
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 2e-72 | |
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 3e-64 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 3e-56 | |
| PLN02880 | 490 | PLN02880, PLN02880, tyrosine decarboxylase | 3e-55 | |
| PLN02880 | 490 | PLN02880, PLN02880, tyrosine decarboxylase | 2e-50 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 3e-50 | |
| PLN02880 | 490 | PLN02880, PLN02880, tyrosine decarboxylase | 1e-49 | |
| PLN02590 | 539 | PLN02590, PLN02590, probable tyrosine decarboxylas | 3e-45 | |
| PLN02590 | 539 | PLN02590, PLN02590, probable tyrosine decarboxylas | 3e-43 | |
| PLN02590 | 539 | PLN02590, PLN02590, probable tyrosine decarboxylas | 8e-41 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 1e-35 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 1e-26 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 2e-23 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 3e-23 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 2e-07 | |
| TIGR03799 | 522 | TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend | 2e-04 | |
| PRK02769 | 380 | PRK02769, PRK02769, histidine decarboxylase; Provi | 2e-04 | |
| TIGR03812 | 373 | TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase | 0.001 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 1e-76
Identities = 112/258 (43%), Positives = 154/258 (59%), Gaps = 37/258 (14%)
Query: 11 QVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAI 70
VT W P FHAYFP+GNSYPS+L DMLSDAI C GF+W +SP+CTELE +V+DWL K +
Sbjct: 33 GVTTWHSPNFHAYFPAGNSYPSLLGDMLSDAINCNGFTWESSPACTELENVVMDWLAKML 92
Query: 71 GLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVL---- 123
GLP++FL GGGV+Q S N++ L
Sbjct: 93 GLPKEFLGSGE----------------------------GGGVLQGGSSESNLLALLAAR 124
Query: 124 TRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLR 183
T+ +++ L KL+AY S +AHS +EKAA++A V L+ + D+ +RG L
Sbjct: 125 TKWIRRMKA--AGKPSLGKLVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMDLE 182
Query: 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243
+ +++D+ G IPFFV TLGTT +FD L E+G + ++D+WLHVD AYAGS+FICPE
Sbjct: 183 KAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAYAGSAFICPE 242
Query: 244 FRPFMNGKTSFDNLHLSP 261
FR ++ G D+ +P
Sbjct: 243 FRHWLFGIERADSFSFNP 260
|
Length = 373 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 2e-72
Identities = 113/269 (42%), Positives = 146/269 (54%), Gaps = 44/269 (16%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
+SE + +LAAR + I ++K L KL+AY S +AHS +EKAA++A V
Sbjct: 110 GGSSESNLLALLAARTKWIRRMKAAGK-----PSLGKLVAYTSDQAHSSIEKAALIAGVE 164
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC----------------- 572
L+ + D+ +RG L + +++D+ G IPFFV TLGTT
Sbjct: 165 LREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYD 224
Query: 573 -------------------YRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
GIE ADSF+ N +KW+L D S LWV D+ L A
Sbjct: 225 LWLHVDAAYAGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQA 284
Query: 614 LVVDPLYLQHGHEG---AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670
L +P YL H + A+DY W IPLSRRFR LKLWFV+R+YG+ GLQ IRRH ELA
Sbjct: 285 LQFNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELA 344
Query: 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLR 699
K FE VR+D RFEI + LGLVCFRL+
Sbjct: 345 KYFEALVRKDSRFEICAERGLGLVCFRLK 373
|
Length = 373 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 3e-64
Identities = 105/270 (38%), Positives = 132/270 (48%), Gaps = 68/270 (25%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVET-------- 319
+SE + +L+AR + I ++K L KL+AY S +AHS +E
Sbjct: 110 GGSSESNLLALLAARTKWIRRMKAAGK-----PSLGKLVAYTSDQAHSSIEKAALIAGVE 164
Query: 320 --------------------------RGHIQSYRDAIF---------------------D 332
G I + A D
Sbjct: 165 LREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYD 224
Query: 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 392
+WLHVD AYAGS+FICPEFR ++ GIE ADSF+ N +KW+L D S LWV D+ L A
Sbjct: 225 LWLHVDAAYAGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQA 284
Query: 393 LVVDPLYLQHGHEG---AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449
L +P YL H + A+DY W IPLSRRFR LKLWFV+R+YG+ GLQ IRRH ELA
Sbjct: 285 LQFNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELA 344
Query: 450 KLFEGKVRRDPRFEISNDVRSSASECIFVC 479
K FE VR+D RFEI + VC
Sbjct: 345 KYFEALVRKDSRFEICAER-----GLGLVC 369
|
Length = 373 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 3e-56
Identities = 68/236 (28%), Positives = 103/236 (43%), Gaps = 38/236 (16%)
Query: 20 FHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMY 79
F A F + P++L +ML+ A I F+W SP+ TE+E V++WL K GLP
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPS----- 55
Query: 80 PPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQS--VQNI---IVLTRGQKKIHPFV 134
GV S ++ ++ R + +
Sbjct: 56 ----------------------------EDADGVFTSGGSESNLLALLAARDRARKRLKA 87
Query: 135 DEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGY 194
G + KL+ CS +AH VEKAA V+++++ D+ + L + +D+ G
Sbjct: 88 GGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGL 147
Query: 195 IPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250
P V T GTT + D L EI +A+++D+WLHVD AY G PE R G
Sbjct: 148 NPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFG 203
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 3e-55
Identities = 112/304 (36%), Positives = 157/304 (51%), Gaps = 54/304 (17%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ +ASE + V +LAAR + + K+ K L KL+ Y S + HS ++KA +A
Sbjct: 151 IQGTASEAVLVVLLAARDRVLRKVGK--------NALEKLVVYASDQTHSALQKACQIAG 202
Query: 528 V---RLKILEPDDKN--SLRGATLRQVMQQDETMGYIPFFVSTTLGTTS----------- 571
+ ++L+ D +L L + + D + G IPFF+ T+GTTS
Sbjct: 203 IHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELG 262
Query: 572 ----------------------C--YRKS-QGIEYADSFNVNVNKWLLTAFDSSCLWVAD 606
C YR G+E ADSFN+N +KW LT FD S LWV D
Sbjct: 263 KIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKD 322
Query: 607 RYKLTSALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYI 663
R L +L +P +L++ A +DY+ W IPL RRFRSLKLW V+R YG+ LQ YI
Sbjct: 323 RNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYI 382
Query: 664 RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQN--NRKLLEDINASG 721
R H +LAK FE V +D RFE+ LVCFRL N + N N LL+ +N+SG
Sbjct: 383 RNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSG 442
Query: 722 RLHM 725
++ +
Sbjct: 443 KIFI 446
|
Length = 490 |
| >gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 2e-50
Identities = 74/136 (54%), Positives = 95/136 (69%), Gaps = 3/136 (2%)
Query: 332 DVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS 391
+W HVD AYAGS+ ICPE+R +++G+E ADSFN+N +KW LT FD S LWV DR L
Sbjct: 269 GMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQ 328
Query: 392 ALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 448
+L +P +L++ A +DY+ W IPL RRFRSLKLW V+R YG+ LQ YIR H +L
Sbjct: 329 SLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKL 388
Query: 449 AKLFEGKVRRDPRFEI 464
AK FE V +D RFE+
Sbjct: 389 AKEFEQLVAQDSRFEV 404
|
Length = 490 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 3e-50
Identities = 76/297 (25%), Positives = 113/297 (38%), Gaps = 81/297 (27%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
S SE + +LAAR +A +LK G + KL+ CS +AH VEKAA V+
Sbjct: 64 SGGSESNLLALLAARDRARKRLKA-----GGGRGIDKLVIVCSDQAHVSVEKAAAYLDVK 118
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS------------------ 571
++++ D+ + L + +D+ G P V T GTT
Sbjct: 119 VRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYD 178
Query: 572 -------CY-----------RKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
Y GIE DS +V+ +K+ L S + V
Sbjct: 179 LWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLV--------- 229
Query: 614 LVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673
R+LKLW +R +G G ++I R +LAK
Sbjct: 230 -----------------------------RALKLWATLRRFGRDGYGEHIDRIVDLAKYL 260
Query: 674 EGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730
+R DP FE+ + L LVCFRL+ L D+ N L + +N G H+ +
Sbjct: 261 AELIRADPGFELLGEPNLSLVCFRLKPSVKL--DELNYDLSDRLNERGGWHVPATTL 315
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-49
Identities = 93/257 (36%), Positives = 137/257 (53%), Gaps = 37/257 (14%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHWQ P + AY+PS +S L +MLS + +GFSW SP+ TELE IVLDWL K +
Sbjct: 77 VTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLN 136
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQN---IIVLTRGQK 128
LPE+FL GGGVIQ + ++VL +
Sbjct: 137 LPEQFL----------------------------STGNGGGVIQGTASEAVLVVLLAARD 168
Query: 129 KIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV---RLKILEPDDKN--SLRGATLR 183
++ V + L KL+ Y S + HS ++KA +A + ++L+ D +L L
Sbjct: 169 RVLRKVGKNAL-EKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLS 227
Query: 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243
+ + D + G IPFF+ T+GTTS + D L E+G +AK +W HVD AYAGS+ ICPE
Sbjct: 228 EAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPE 287
Query: 244 FRPFMNGKTSFDNLHLS 260
+R +++G D+ +++
Sbjct: 288 YRHYIDGVEEADSFNMN 304
|
Length = 490 |
| >gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 3e-45
Identities = 103/302 (34%), Positives = 151/302 (50%), Gaps = 54/302 (17%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ + E + V +LAAR + + K+ K LL +L+ Y S + HS KA ++
Sbjct: 199 IQGTGCEAVLVVVLAARDRILKKVGK--------TLLPQLVVYGSDQTHSSFRKACLIGG 250
Query: 528 VR---LKILEPDDKNS--LRGATLRQVMQQDETMGYIPFFVSTTLGTTSC---------- 572
+ +++L+ D + + +L + + D G+IPFF+ T+GTTS
Sbjct: 251 IHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLG 310
Query: 573 -------------------------YRK-SQGIEYADSFNVNVNKWLLTAFDSSCLWVAD 606
YRK GIE ADSFN+N +KWL S LWV D
Sbjct: 311 NIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKD 370
Query: 607 RYKLTSALVVDPLYLQ---HGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYI 663
RY L AL +P YL+ + ++Y+ W I LSRRFRSLKLW V+R YG L+ +I
Sbjct: 371 RYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFI 430
Query: 664 RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRL--RSENNLIADQNNRKLLEDINASG 721
R H LAK FE V +DP FE+ LVCFRL + ++ NR+LL +N++G
Sbjct: 431 RDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTG 490
Query: 722 RL 723
++
Sbjct: 491 KI 492
|
Length = 539 |
| >gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 165 bits (418), Expect = 3e-43
Identities = 93/272 (34%), Positives = 141/272 (51%), Gaps = 49/272 (18%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
+THWQ P + AY+ S S L +ML+ + +GF+W SP+ TELE IVLDWL K +
Sbjct: 125 ITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQ 184
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSV---QNIIVLTRGQK 128
LP+ FL +T N GGGVIQ ++V+ +
Sbjct: 185 LPDHFL---------STGN-------------------GGGVIQGTGCEAVLVVVLAARD 216
Query: 129 KIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR---LKILEPDDKNS--LRGATLR 183
+I V + LL +L+ Y S + HS KA ++ + +++L+ D + + +L
Sbjct: 217 RILKKVGK-TLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLE 275
Query: 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243
+ + D G+IPFF+ T+GTTS + D L +G +AK++ +WLHVD AYAG++ ICPE
Sbjct: 276 EAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPE 335
Query: 244 FRPFMNG------------KTSFDNLHLSPIW 263
+R F++G K F N SP+W
Sbjct: 336 YRKFIDGIENADSFNMNAHKWLFANQTCSPLW 367
|
Length = 539 |
| >gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 8e-41
Identities = 72/137 (52%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+ +WLHVD AYAG++ ICPE+R F++GIE ADSFN+N +KWL S LWV DRY L
Sbjct: 316 YGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLI 375
Query: 391 SALVVDPLYLQ---HGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447
AL +P YL+ + ++Y+ W I LSRRFRSLKLW V+R YG L+ +IR H
Sbjct: 376 DALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVN 435
Query: 448 LAKLFEGKVRRDPRFEI 464
LAK FE V +DP FE+
Sbjct: 436 LAKHFEDYVAQDPSFEV 452
|
Length = 539 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 1e-35
Identities = 60/257 (23%), Positives = 85/257 (33%), Gaps = 98/257 (38%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHI---- 323
S SE + +L+AR +A +LK G + KL+ CS +AH VE
Sbjct: 64 SGGSESNLLALLAARDRARKRLKA-----GGGRGIDKLVIVCSDQAHVSVEKAAAYLDVK 118
Query: 324 --------------QSYRDAI------------------------FD------------- 332
++ AI D
Sbjct: 119 VRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYD 178
Query: 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 392
+WLHVD AY G PE R GIE DS +V+ +K+ L S + V
Sbjct: 179 LWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLV--------- 229
Query: 393 LVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 452
R+LKLW +R +G G ++I R +LAK
Sbjct: 230 -----------------------------RALKLWATLRRFGRDGYGEHIDRIVDLAKYL 260
Query: 453 EGKVRRDPRFEISNDVR 469
+R DP FE+ +
Sbjct: 261 AELIRADPGFELLGEPN 277
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 1e-26
Identities = 64/292 (21%), Positives = 107/292 (36%), Gaps = 60/292 (20%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKL-MAYCSKEAHSCVEKAAMMAFV 528
S +E + +LAAR + + E CS+ AH EKAA +
Sbjct: 126 SGGTEANLLALLAARERWRKRALA------ESGKPGGKPNIVCSETAHFSFEKAARYLGL 179
Query: 529 RLKILE--PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT---------------- 570
L+ + P D + L + + ++ G V T GTT
Sbjct: 180 GLRRVPTVPTD-YRIDVDALEEAIDENTIGGV----VVGTAGTTDTGSIDDIEELADIAE 234
Query: 571 ---------SCY------------RKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYK 609
+ + R G+E DS V+ +K+ L + D
Sbjct: 235 EYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEA 294
Query: 610 LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
L L+ YL G ++ G R+ +L L+ +R G G +K + R EL
Sbjct: 295 LRRILIFADYYL--PGGGIPNFTILGSRPGRQ--ALALYANLRRLGREGYRKLLDRTLEL 350
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721
A+ ++ + FE+ N+ L +V FRL+ + + +AD L E ++ G
Sbjct: 351 ARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLAD-----LSERLDRRG 397
|
Length = 460 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-23
Identities = 54/238 (22%), Positives = 88/238 (36%), Gaps = 40/238 (16%)
Query: 10 HQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKA 69
++ HPR + P V A++L A+ SP+ ELE V++ L
Sbjct: 54 DELYLDGHPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDL 113
Query: 70 IGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPAN--QPQSLGGGVIQSVQNIIVLTRGQ 127
+G PE+ G T N + + + ++L + I
Sbjct: 114 LGAPEEASGTFTSG--GTEAN-----LLALLAARERWRKRALAESGKPGGKPNI------ 160
Query: 128 KKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE--PDDKNSLRGATLRQV 185
CS+ AH EKAA + L+ + P D + L +
Sbjct: 161 ------------------VCSETAHFSFEKAARYLGLGLRRVPTVPTD-YRIDVDALEEA 201
Query: 186 MQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243
+ ++ G V T GTT S D++ E+ +A+E+ +WLHVD A+ G E
Sbjct: 202 IDENTIGGV----VVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLE 255
|
Length = 460 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 51/259 (19%), Positives = 84/259 (32%), Gaps = 64/259 (24%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKL-MAYCSKEAHSCVE-------- 318
S +E + +L+AR + + E CS+ AH E
Sbjct: 126 SGGTEANLLALLAARERWRKRALA------ESGKPGGKPNIVCSETAHFSFEKAARYLGL 179
Query: 319 ---------TRGHI--QSYRDAI---------------------------------FDVW 334
T I + +AI + +W
Sbjct: 180 GLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIW 239
Query: 335 LHVDGAYAGSSFICPEFR-PFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSAL 393
LHVD A+ G E + G+E DS V+ +K+ L + D L L
Sbjct: 240 LHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRIL 299
Query: 394 VVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 453
+ YL G ++ G R+ +L L+ +R G G +K + R ELA+
Sbjct: 300 IFADYYL--PGGGIPNFTILGSRPGRQ--ALALYANLRRLGREGYRKLLDRTLELARYLA 355
Query: 454 GKVRRDPRFEISNDVRSSA 472
++ + FE+ N+
Sbjct: 356 EELEKLGDFELVNEPELPI 374
|
Length = 460 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 152 HSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211
S AA +A + + P D G + + ++ + T TTS
Sbjct: 52 GSRYWVAAELAGAKPVPV-PVDDAGYGGLDVAIL--EELKAKPNVALIVITPNTTSGGVL 108
Query: 212 DNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPF 247
L EI +AKE+ + L VD A AG + P
Sbjct: 109 VPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIP 144
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 148 SKEAHSCVEKAA-MMAFVR--LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG 204
S+ H + KAA ++ R L ++ D N + LR + P + G
Sbjct: 215 SERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAG 274
Query: 205 TTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250
TT + D L E+ +A+E HVD A+ G++ + +R + G
Sbjct: 275 TTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKG 320
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522 |
| >gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG 204
Y SK+ H V K A + ++ +++ + L +++++ I F +G
Sbjct: 113 LYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIF---ANIG 169
Query: 205 TTSCCSFDNLAEIGPVAKEF---DVWLHVDGAYAGSSFICPEFRPFMNGKTSFD 255
TT + DN+ EI + K+ D ++H D A +G PF+N F
Sbjct: 170 TTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGM------ILPFVNNPPPFS 217
|
Length = 380 |
| >gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 149 KEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQV--MQQDETMGYIPFFVSTTLGTT 206
+ AH EKAA M + L++ ++ V + D T+G + GTT
Sbjct: 113 ESAHFSFEKAAEM--LGLELRYAPLDEDYT-VDVKDVEDLIDDNTIG-----IVGIAGTT 164
Query: 207 SCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICP 242
D++ E+ +A E ++LHVD A+ G F+ P
Sbjct: 165 ELGQIDDIEELSKIALENGIYLHVDAAFGG--FVIP 198
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 891 | |||
| KOG0628|consensus | 511 | 100.0 | ||
| PLN02590 | 539 | probable tyrosine decarboxylase | 100.0 | |
| PLN02880 | 490 | tyrosine decarboxylase | 100.0 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 100.0 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 100.0 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 100.0 | |
| KOG0629|consensus | 510 | 100.0 | ||
| PLN02263 | 470 | serine decarboxylase | 100.0 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 100.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 100.0 | |
| KOG0629|consensus | 510 | 100.0 | ||
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 100.0 | |
| PLN02263 | 470 | serine decarboxylase | 100.0 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 100.0 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.98 | |
| KOG0628|consensus | 511 | 99.97 | ||
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.97 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.96 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.94 | |
| KOG1383|consensus | 491 | 99.94 | ||
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.94 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.93 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.92 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.92 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.91 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.9 | |
| KOG1383|consensus | 491 | 99.89 | ||
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.86 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.85 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.83 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.83 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.83 | |
| KOG1549|consensus | 428 | 99.82 | ||
| PLN02651 | 364 | cysteine desulfurase | 99.82 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.82 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.81 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.81 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.81 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.81 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.8 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.78 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.74 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.73 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.73 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.73 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.73 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.72 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.72 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.71 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.69 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.66 | |
| PLN02651 | 364 | cysteine desulfurase | 99.66 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.65 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.65 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.65 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.63 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.63 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.61 | |
| KOG1549|consensus | 428 | 99.58 | ||
| KOG0630|consensus | 838 | 99.58 | ||
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.58 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.57 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.53 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.52 | |
| KOG0630|consensus | 838 | 99.51 | ||
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.5 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.49 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.46 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.44 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.44 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.44 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.43 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.41 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.39 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.39 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.38 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.37 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.36 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.34 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.33 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.33 | |
| PLN02721 | 353 | threonine aldolase | 99.31 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.31 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.31 | |
| KOG1368|consensus | 384 | 99.29 | ||
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.29 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.26 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.25 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.25 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.24 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.24 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.23 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.22 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.18 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.17 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.17 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.17 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.16 | |
| PLN02721 | 353 | threonine aldolase | 99.15 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.15 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.15 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.14 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.14 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.13 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.11 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.1 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.09 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.08 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.07 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.06 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.06 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.06 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.05 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.03 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.02 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.02 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 98.99 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 98.97 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.94 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 98.94 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 98.92 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 98.9 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.89 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 98.89 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 98.88 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 98.88 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 98.86 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.84 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.83 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 98.82 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 98.81 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 98.81 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 98.8 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 98.79 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 98.78 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.78 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 98.78 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 98.77 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.76 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 98.76 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 98.76 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 98.75 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 98.75 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 98.73 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 98.72 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 98.72 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 98.71 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 98.68 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 98.68 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 98.67 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 98.66 | |
| PLN02509 | 464 | cystathionine beta-lyase | 98.66 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 98.65 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 98.65 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 98.64 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.64 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 98.62 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 98.62 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 98.61 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 98.6 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 98.6 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 98.6 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 98.6 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.6 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 98.6 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 98.6 | |
| KOG1368|consensus | 384 | 98.6 | ||
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 98.6 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 98.59 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 98.58 | |
| PLN02483 | 489 | serine palmitoyltransferase | 98.58 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 98.58 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 98.57 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 98.57 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 98.56 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 98.56 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 98.54 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 98.53 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 98.53 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 98.52 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 98.51 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 98.51 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 98.51 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 98.51 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 98.51 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 98.51 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 98.5 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 98.49 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 98.49 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 98.49 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.48 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.46 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.46 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 98.45 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 98.42 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 98.42 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 98.41 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 98.41 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 98.4 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 98.38 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 98.38 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 98.38 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 98.38 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 98.37 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 98.36 | |
| PLN02822 | 481 | serine palmitoyltransferase | 98.35 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 98.35 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 98.34 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 98.34 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.33 | |
| KOG2862|consensus | 385 | 98.33 | ||
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 98.32 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 98.32 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 98.32 | |
| PLN02822 | 481 | serine palmitoyltransferase | 98.32 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 98.32 | |
| PLN02242 | 418 | methionine gamma-lyase | 98.32 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 98.31 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 98.31 | |
| KOG2040|consensus | 1001 | 98.27 | ||
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 98.27 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 98.26 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 98.26 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.25 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.24 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 98.23 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 98.22 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 98.21 | |
| PLN02483 | 489 | serine palmitoyltransferase | 98.21 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 98.21 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 98.2 | |
| KOG2040|consensus | 1001 | 98.2 | ||
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 98.19 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 98.19 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 98.18 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 98.18 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 98.17 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 98.17 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 98.17 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 98.16 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 98.16 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 98.15 | |
| PLN02452 | 365 | phosphoserine transaminase | 98.14 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 98.13 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.11 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 98.11 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 98.09 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 98.09 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 98.09 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 98.07 | |
| PRK07777 | 387 | aminotransferase; Validated | 98.06 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 98.06 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 98.06 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 98.05 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 98.05 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 98.04 | |
| PLN02656 | 409 | tyrosine transaminase | 98.04 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 98.04 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 98.02 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.02 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 98.02 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 98.01 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 98.01 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 98.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 98.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 98.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 98.0 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 97.98 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 97.98 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 97.98 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 97.97 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 97.97 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 97.96 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 97.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 97.96 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 97.96 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 97.94 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 97.94 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 97.93 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 97.93 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 97.92 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 97.92 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 97.91 | |
| PRK07682 | 378 | hypothetical protein; Validated | 97.91 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 97.91 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 97.91 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 97.9 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.89 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 97.89 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 97.86 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 97.86 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 97.85 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 97.84 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 97.83 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 97.83 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 97.83 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 97.83 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 97.82 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 97.82 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 97.81 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 97.81 | |
| PRK07337 | 388 | aminotransferase; Validated | 97.81 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 97.81 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 97.78 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 97.77 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 97.77 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 97.77 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 97.77 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 97.76 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 97.76 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 97.76 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 97.75 | |
| PLN02452 | 365 | phosphoserine transaminase | 97.75 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 97.74 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 97.74 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 97.74 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 97.73 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 97.73 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 97.73 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 97.73 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 97.72 | |
| PLN02187 | 462 | rooty/superroot1 | 97.72 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 97.72 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 97.7 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 97.7 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 97.69 | |
| PRK07682 | 378 | hypothetical protein; Validated | 97.68 | |
| PRK07777 | 387 | aminotransferase; Validated | 97.68 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 97.68 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 97.68 | |
| PRK07324 | 373 | transaminase; Validated | 97.67 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 97.65 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 97.64 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 97.64 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 97.63 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 97.63 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 97.6 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 97.6 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 97.59 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 97.59 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 97.59 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.59 | |
| PRK07683 | 387 | aminotransferase A; Validated | 97.58 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 97.58 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 97.58 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 97.58 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 97.56 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 97.55 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 97.55 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 97.55 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 97.55 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 97.55 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 97.54 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 97.53 | |
| PRK08175 | 395 | aminotransferase; Validated | 97.53 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 97.52 | |
| PRK07324 | 373 | transaminase; Validated | 97.52 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 97.52 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 97.52 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 97.52 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 97.52 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 97.51 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 97.5 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 97.5 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 97.49 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 97.49 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 97.49 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 97.47 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 97.47 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 97.46 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 97.46 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 97.45 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 97.45 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 97.45 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 97.45 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 97.45 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 97.44 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 97.43 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 97.42 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 97.42 | |
| PLN02368 | 407 | alanine transaminase | 97.41 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 97.41 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 97.41 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 97.4 | |
| PRK08068 | 389 | transaminase; Reviewed | 97.39 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 97.39 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 97.39 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 97.39 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 97.39 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 97.38 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 97.37 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 97.37 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 97.37 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 97.36 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 97.36 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 97.35 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 97.34 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 97.34 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 97.33 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 97.32 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 97.32 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 97.32 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 97.32 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 97.31 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 97.31 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 97.29 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 97.29 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 97.28 | |
| PLN02231 | 534 | alanine transaminase | 97.27 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 97.27 | |
| KOG2467|consensus | 477 | 97.27 | ||
| PRK09148 | 405 | aminotransferase; Validated | 97.26 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 97.25 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 97.25 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 97.25 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 97.25 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 97.24 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 97.24 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 97.24 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 97.24 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 97.22 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 97.21 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 97.21 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 97.2 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 97.2 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 97.2 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 97.2 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 97.19 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 97.18 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 97.18 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 97.18 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 97.17 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 97.16 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 97.16 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 97.16 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 97.16 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 97.16 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 97.15 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 97.15 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.14 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 97.13 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 97.13 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 97.13 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 97.13 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 97.12 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 97.12 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 97.11 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 97.11 | |
| PLN02509 | 464 | cystathionine beta-lyase | 97.11 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 97.1 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 97.1 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 97.09 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 97.09 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 97.08 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 97.08 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 97.08 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 97.07 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 97.06 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 97.05 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 97.04 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 97.02 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 97.01 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 97.01 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 97.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 96.99 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 96.98 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 96.98 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 96.96 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 96.96 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 96.95 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 96.92 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 96.91 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 96.91 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 96.9 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 96.9 | |
| PRK08068 | 389 | transaminase; Reviewed | 96.9 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 96.89 | |
| PRK09148 | 405 | aminotransferase; Validated | 96.89 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 96.89 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 96.88 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 96.88 | |
| PLN02656 | 409 | tyrosine transaminase | 96.87 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 96.86 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 96.86 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 96.84 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 96.82 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 96.82 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 96.81 | |
| PLN02187 | 462 | rooty/superroot1 | 96.79 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 96.79 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 96.78 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 96.78 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 96.77 |
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-69 Score=589.40 Aligned_cols=404 Identities=55% Similarity=0.967 Sum_probs=366.6
Q ss_pred hhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy852 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQG 83 (891)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~ 83 (891)
+-..|+||++||+||+||+|+|+++++|+++|+||+..+++.|++|..||++|+||..+++||++|+|+|+.|+...
T Consensus 60 ~ekiI~PGitHw~hP~fhAyfpa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~--- 136 (511)
T KOG0628|consen 60 LEKIIMPGITHWQHPHFHAYFPAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLG--- 136 (511)
T ss_pred HHHHccCCCcccCCCceeeEccCccchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccC---
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999987522
Q ss_pred CCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHH-----HHHHhc-----cccCCccccccccCCeEEEecCCCCh
Q psy852 84 KNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNII-----VLTRGQ-----KKIHPFVDEGVLLSKLMAYCSKEAHS 153 (891)
Q Consensus 84 ~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~-----~~ar~~-----~~~~~~~~~g~~~~~~~v~~S~~~H~ 153 (891)
.+-+||++|+..+.. ..||.+ +..+|.+.+...+.++++|+|+++|.
T Consensus 137 -----------------------~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahs 193 (511)
T KOG0628|consen 137 -----------------------LGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHS 193 (511)
T ss_pred -----------------------CCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccc
Confidence 223566666544322 225655 23568888888999999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecc
Q psy852 154 CVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGA 233 (891)
Q Consensus 154 Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA 233 (891)
|++|||.+++++++.+++|++..|+.+.|+++|++|.++|.+|++|++|.|||.++++|+|.+|..+|+++
T Consensus 194 sveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~--------- 264 (511)
T KOG0628|consen 194 SVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREE--------- 264 (511)
T ss_pred hHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhhc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccc
Q psy852 234 YAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEA 313 (891)
Q Consensus 234 ~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (891)
T Consensus 265 -------------------------------------------------------------------------------- 264 (511)
T KOG0628|consen 265 -------------------------------------------------------------------------------- 264 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhc
Q psy852 314 HSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSAL 393 (891)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~ 393 (891)
++|||||+||||++++||+++.+++||++|||+++|+|||+.+.++|+.+|+||+..+..++
T Consensus 265 ------------------glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~ 326 (511)
T KOG0628|consen 265 ------------------GLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAF 326 (511)
T ss_pred ------------------CEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeee
Confidence 58999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcc
Q psy852 394 VVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSAS 473 (891)
Q Consensus 394 ~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggs 473 (891)
.++|.||.+...+
T Consensus 327 ~vdp~yL~h~~~~------------------------------------------------------------------- 339 (511)
T KOG0628|consen 327 NVDPLYLKHAYQG------------------------------------------------------------------- 339 (511)
T ss_pred ecChHhhcchhhc-------------------------------------------------------------------
Confidence 9999999765210
Q ss_pred hhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhh
Q psy852 474 ECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQD 553 (891)
Q Consensus 474 ean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d 553 (891)
T Consensus 340 -------------------------------------------------------------------------------- 339 (511)
T KOG0628|consen 340 -------------------------------------------------------------------------------- 339 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccC
Q psy852 554 ETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 633 (891)
Q Consensus 554 ~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~ 633 (891)
..++++.
T Consensus 340 -------------------------------------------------------------------------~~~Dyrh 346 (511)
T KOG0628|consen 340 -------------------------------------------------------------------------SAPDYRH 346 (511)
T ss_pred -------------------------------------------------------------------------cCCCccc
Confidence 0124567
Q ss_pred CcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHH
Q psy852 634 WGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKL 713 (891)
Q Consensus 634 ~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L 713 (891)
|.++++||||+||+|++++.+|.+++++.+++..+||+.|.+.+.+.+.||+.++..+++||||.++. |++|++|
T Consensus 347 wqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~-----N~~ne~L 421 (511)
T KOG0628|consen 347 WQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGD-----NEINEAL 421 (511)
T ss_pred cccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCC-----cHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred HHHHHhCCcEEEeeccccCCeEE-EEec-CCCCHHHHHHHHHHHHHHHHHHHHh
Q psy852 714 LEDINASGRLHMVPASQEQNDEV-FELQ-ERKRKDDLAYKRSFFVRMLGLVCFR 765 (891)
Q Consensus 714 ~~~L~~~G~~~~s~s~~~g~~~l-~sv~-~~tT~edId~li~~L~ei~~~~~~~ 765 (891)
+++++.+|.++++++.+.|++++ ++++ +.|+++||+..++.|.+.++.+.+.
T Consensus 422 l~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 422 LNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred HHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999 8865 4899999999999999998765543
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-68 Score=618.27 Aligned_cols=405 Identities=37% Similarity=0.720 Sum_probs=346.2
Q ss_pred hhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy852 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQG 83 (891)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~ 83 (891)
+.+.|+|+++||+||||++|+++++++++++|+++++++|+++++|..||++++||++|++||++|+|+|+.++. ...+
T Consensus 117 ~~~~i~p~~~~~~hP~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~-~~~~ 195 (539)
T PLN02590 117 VSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLS-TGNG 195 (539)
T ss_pred HHHHHhccCCcCCCCCeeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCccccc-CCCC
Confidence 567799999999999999999999999999999999999999999999999999999999999999999987541 0012
Q ss_pred CCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcccccc-ccCCeEEEecCCCChHHHHHHHHc
Q psy852 84 KNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGV-LLSKLMAYCSKEAHSCVEKAAMMA 162 (891)
Q Consensus 84 ~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~-~~~~~~v~~S~~~H~Sv~kaa~~~ 162 (891)
. |.+++|||+ +|+..+..||++.... .|. ..++++||+|+++|||+.|++++.
T Consensus 196 g---------------------G~~~sGgSe-Anl~al~aAR~~~~~~----~g~~~~~~~vvy~S~~aH~Sv~KAa~il 249 (539)
T PLN02590 196 G---------------------GVIQGTGCE-AVLVVVLAARDRILKK----VGKTLLPQLVVYGSDQTHSSFRKACLIG 249 (539)
T ss_pred c---------------------eEEcCchHH-HHHHHHHHHHHHHHhh----hcccCCCCEEEEecCCchHHHHHHHHHc
Confidence 2 234688885 5677777899864211 121 247889999999999999999875
Q ss_pred CC---eEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCC
Q psy852 163 FV---RLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 163 ~~---~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|. +++.||+|+ +++||+++|+++|+++.++|.+|++|++|+|||.+|+||||.+|+++|++||+|+||||||||+
T Consensus 250 Glg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~ 329 (539)
T PLN02590 250 GIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGN 329 (539)
T ss_pred CCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhh
Confidence 54 799999994 6899999999999999999999999999999999999999999999999997666666666555
Q ss_pred ccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccc
Q psy852 238 SFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 317 (891)
Q Consensus 238 ~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (891)
.+
T Consensus 330 al------------------------------------------------------------------------------ 331 (539)
T PLN02590 330 AC------------------------------------------------------------------------------ 331 (539)
T ss_pred hh------------------------------------------------------------------------------
Confidence 54
Q ss_pred ccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCc
Q psy852 318 ETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP 397 (891)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~ 397 (891)
++|+++++++|++.||||++|+|||+++||+||++++|++..+..++..++
T Consensus 332 -----------------------------~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~ 382 (539)
T PLN02590 332 -----------------------------ICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNP 382 (539)
T ss_pred -----------------------------cChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCH
Confidence 455556677899999999999999999999999999999877777676677
Q ss_pred cccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHH
Q psy852 398 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIF 477 (891)
Q Consensus 398 ~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~ 477 (891)
+|+....+.
T Consensus 383 ~YL~~~~~~----------------------------------------------------------------------- 391 (539)
T PLN02590 383 EYLEFKVSK----------------------------------------------------------------------- 391 (539)
T ss_pred HHhCCcccc-----------------------------------------------------------------------
Confidence 776432000
Q ss_pred HHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcC
Q psy852 478 VCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG 557 (891)
Q Consensus 478 ~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g 557 (891)
T Consensus 392 -------------------------------------------------------------------------------- 391 (539)
T PLN02590 392 -------------------------------------------------------------------------------- 391 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc
Q psy852 558 YIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP 637 (891)
Q Consensus 558 ~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~ 637 (891)
.+..+++.+++++
T Consensus 392 -------------------------------------------------------------------~~~~~d~~d~~i~ 404 (539)
T PLN02590 392 -------------------------------------------------------------------KDTVVNYKDWQIS 404 (539)
T ss_pred -------------------------------------------------------------------cccCCCccccCCC
Confidence 0011245678999
Q ss_pred ccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc--chhhhhhHHHHHH
Q psy852 638 LSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN--NLIADQNNRKLLE 715 (891)
Q Consensus 638 ~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~--~~~~d~ln~~L~~ 715 (891)
+|||+++|++|++|+.+|.+||++++++++++|++|.+.|++.++||++.+|.+++||||+.|.. .++.|++|++|.+
T Consensus 405 lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~ 484 (539)
T PLN02590 405 LSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLA 484 (539)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998752 3457899999999
Q ss_pred HHHhCCcEEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 716 DINASGRLHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 716 ~L~~~G~~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
+|+++|.+|++++.+++++++ +++ ++.|+++||+.+++.|.+.+.
T Consensus 485 ~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~ 531 (539)
T PLN02590 485 AVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHAS 531 (539)
T ss_pred HHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 875 668999999999999998763
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-63 Score=575.68 Aligned_cols=406 Identities=39% Similarity=0.697 Sum_probs=340.8
Q ss_pred hhhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Q psy852 3 LLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQ 82 (891)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~ 82 (891)
.+.+.|+|+++||+||+|++|+++++++++++|+++++.+|+|+.+|+.||++++||+++++||++|+|+|+.+... -.
T Consensus 68 ~~~~~i~~~~~~~~hP~f~~~~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~-~~ 146 (490)
T PLN02880 68 DVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLST-GN 146 (490)
T ss_pred HHHHHHhcCCCCCCCCCeeEeccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcC-CC
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999875310 00
Q ss_pred CCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccc-cccCCeEEEecCCCChHHHHHHHH
Q psy852 83 GKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEG-VLLSKLMAYCSKEAHSCVEKAAMM 161 (891)
Q Consensus 83 ~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g-~~~~~~~v~~S~~~H~Sv~kaa~~ 161 (891)
+. |.+++|||+ +|+..+.+||++.... .| ...++++||+|+++|||+.|++.+
T Consensus 147 ~g---------------------G~~tsggs~-anl~al~~AR~~~~~~----~g~~~~~~~vv~~S~~aH~Sv~Kaa~~ 200 (490)
T PLN02880 147 GG---------------------GVIQGTASE-AVLVVLLAARDRVLRK----VGKNALEKLVVYASDQTHSALQKACQI 200 (490)
T ss_pred Cc---------------------eEEcCccHH-HHHHHHHHHHHHHHHH----hcccccCCeEEEEcCCchHHHHHHHHH
Confidence 11 234678875 6777788899864211 11 124678999999999999999976
Q ss_pred cCC---eEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccC
Q psy852 162 AFV---RLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 162 ~~~---~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG 236 (891)
.|. +++.||+|+ +++||+++|+++|+++.++|.+|++|++|+|||.+|++|||++|+++|+++|+|+||||||||
T Consensus 201 lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg 280 (490)
T PLN02880 201 AGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAG 280 (490)
T ss_pred cCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHH
Confidence 554 689999985 679999999999999999999999999999999999999999999999999766666666655
Q ss_pred CccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccc
Q psy852 237 SSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC 316 (891)
Q Consensus 237 ~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (891)
+.
T Consensus 281 ~~------------------------------------------------------------------------------ 282 (490)
T PLN02880 281 SA------------------------------------------------------------------------------ 282 (490)
T ss_pred HH------------------------------------------------------------------------------
Confidence 44
Q ss_pred cccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccC
Q psy852 317 VETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD 396 (891)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~ 396 (891)
+++|+++..++|++.|||+++|+|||+++|++||++++|++..+...+..+
T Consensus 283 -----------------------------~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~ 333 (490)
T PLN02880 283 -----------------------------CICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTN 333 (490)
T ss_pred -----------------------------HhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccC
Confidence 445555667788889999999999999999999999999876665555556
Q ss_pred ccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhH
Q psy852 397 PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECI 476 (891)
Q Consensus 397 ~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean 476 (891)
+.|+.+..+.
T Consensus 334 ~~Yl~~~~~~---------------------------------------------------------------------- 343 (490)
T PLN02880 334 PEFLKNKASQ---------------------------------------------------------------------- 343 (490)
T ss_pred HHHhcCcccc----------------------------------------------------------------------
Confidence 6665432100
Q ss_pred HHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhc
Q psy852 477 FVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM 556 (891)
Q Consensus 477 ~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~ 556 (891)
T Consensus 344 -------------------------------------------------------------------------------- 343 (490)
T PLN02880 344 -------------------------------------------------------------------------------- 343 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 557 GYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 557 g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
....+++.++++
T Consensus 344 --------------------------------------------------------------------~~~~~~~~~~~i 355 (490)
T PLN02880 344 --------------------------------------------------------------------ANSVVDYKDWQI 355 (490)
T ss_pred --------------------------------------------------------------------ccCCCChhccCc
Confidence 001123446778
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc--chhhhhhHHHHH
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN--NLIADQNNRKLL 714 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~--~~~~d~ln~~L~ 714 (891)
++|||+++|++|++|+.+|.+||++++++++++|+++.+.|++.++|+++.++++++||||+.|.. .+..|.+|+++.
T Consensus 356 ~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~ 435 (490)
T PLN02880 356 PLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLL 435 (490)
T ss_pred CCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999998642 356788999999
Q ss_pred HHHHhCCcEEEeeccccCCeEE-EEecC-CCCHHHHHHHHHHHHHHHH
Q psy852 715 EDINASGRLHMVPASQEQNDEV-FELQE-RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 715 ~~L~~~G~~~~s~s~~~g~~~l-~sv~~-~tT~edId~li~~L~ei~~ 760 (891)
++|+++|.++++.+.++++.++ +|+++ .||++||+.+++.|++++.
T Consensus 436 ~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~ 483 (490)
T PLN02880 436 DAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEAS 483 (490)
T ss_pred HHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 98765 6788999999999998874
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-61 Score=539.26 Aligned_cols=335 Identities=36% Similarity=0.661 Sum_probs=278.1
Q ss_pred hhhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Q psy852 3 LLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQ 82 (891)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~ 82 (891)
.+.+.|.|++.+|+||+|++|++++++++++++++++.++|+|+..|+.+|++++||.++++|+++|+|+|..+.... .
T Consensus 25 ~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~-~ 103 (373)
T PF00282_consen 25 DLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSK-D 103 (373)
T ss_dssp HHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTT-T
T ss_pred HHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccC-C
Confidence 356789999999999999999999999999999999999999999999999999999999999999999997654211 1
Q ss_pred CCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccc-cccc-cCCeEEEecCCCChHHHHHHH
Q psy852 83 GKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVD-EGVL-LSKLMAYCSKEAHSCVEKAAM 160 (891)
Q Consensus 83 ~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~-~g~~-~~~~~v~~S~~~H~Sv~kaa~ 160 (891)
++|+ +|+|||+ +|+..+..||++.. +..+ +|.. .+++++|+|+++|||+.|++.
T Consensus 104 ~~G~---------------------~t~Ggt~-anl~al~aAR~~~~--~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~ 159 (373)
T PF00282_consen 104 AGGV---------------------FTSGGTE-ANLYALLAARERAL--PRSKAKGVEEIPKPVIYVSEQAHYSIEKAAR 159 (373)
T ss_dssp SEEE---------------------EESSHHH-HHHHHHHHHHHHHH--HHHHHHTTTHCSSEEEEEETTS-THHHHHHH
T ss_pred Ccee---------------------EeccchH-HHHHHHHHHHHHHh--hhhhhcccccccccccccccccccHHHHhcc
Confidence 2232 4578875 57777778888642 1111 1211 568999999999999999999
Q ss_pred HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccc
Q psy852 161 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFI 240 (891)
Q Consensus 161 ~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~ 240 (891)
+.|..++.||+|++|+||+++|+++|+++.++|++|++|++|+|||.+|++|||.+|+++|+++++|+||||||||
T Consensus 160 ~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg---- 235 (373)
T PF00282_consen 160 ILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGG---- 235 (373)
T ss_dssp HTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGG----
T ss_pred eeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccc----
Confidence 8888899999999999999999999999999999999999999999999999999999999999655555555555
Q ss_pred cCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccc
Q psy852 241 CPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETR 320 (891)
Q Consensus 241 ~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (891)
T Consensus 236 -------------------------------------------------------------------------------- 235 (373)
T PF00282_consen 236 -------------------------------------------------------------------------------- 235 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCcccc
Q psy852 321 GHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYL 400 (891)
Q Consensus 321 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~ 400 (891)
+.+++|++++++.|++.||||++|+|||+++||+||++++|++..+...+..++.|+
T Consensus 236 -----------------------~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl 292 (373)
T PF00282_consen 236 -----------------------SALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYL 292 (373)
T ss_dssp -----------------------GGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCT
T ss_pred -----------------------cccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhh
Confidence 444555666778899999999999999999999999999999998888888899999
Q ss_pred CCCC---CCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCC
Q psy852 401 QHGH---EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR 469 (891)
Q Consensus 401 ~~~~---~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~it 469 (891)
.+.. +...++.+++++|||++++|++|++||.+|.+||++++++.+++|++|+++|++.++|++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~ 364 (373)
T PF00282_consen 293 GNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPD 364 (373)
T ss_dssp T-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTS
T ss_pred cccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 8653 24577899999999999999999999999999999999999999999999999999999998643
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=530.63 Aligned_cols=399 Identities=21% Similarity=0.266 Sum_probs=318.2
Q ss_pred hhhhHhhccCCCCCCccccccCCCC-CCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCC-CCC----
Q psy852 3 LLFHFLSHQVTHWQHPRFHAYFPSG-NSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLP-EKF---- 76 (891)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~---- 76 (891)
.+.+.++|+++||+||+|++||+++ +.+...+++ +...+|+|++.|+.||++++||++|++||++|+|.+ +.+
T Consensus 75 ~~~~~~~~~~~~~~hP~f~g~~~~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~ 153 (522)
T TIGR03799 75 FLLDKLVAHSVHTASPSFIGHMTSALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKW 153 (522)
T ss_pred HHHHHHHcCCCCCCCCCeEEeccCCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhc
Confidence 3567899999999999999999996 333344777 566899999999999999999999999999999643 222
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccC----Cccc-cccc-------cCCeE
Q psy852 77 LMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH----PFVD-EGVL-------LSKLM 144 (891)
Q Consensus 77 ~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~----~~~~-~g~~-------~~~~~ 144 (891)
++....++ |.+++|||+ +|+..+.+||++.... ..+. +|.. .++++
T Consensus 154 ~~~~~~~~---------------------G~~tsGGS~-ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 211 (522)
T TIGR03799 154 MHSADHSL---------------------GAFCSGGTV-ANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLA 211 (522)
T ss_pred ccCCCCCC---------------------eEEcCchHH-HHHHHHHHHHHHhccccccccccccccchhhhhhccCCceE
Confidence 11100111 335689985 5777788899874211 1121 2322 35789
Q ss_pred EEecCCCChHHHHHHHHcCC---eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFV---RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~---~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
||+|+.+|||+.|++.+.+. +++.||+|++|+||+++|+++|+++.++|.+|++|++|+|||++|++|||++|+++|
T Consensus 212 v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~ 291 (522)
T TIGR03799 212 ILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIA 291 (522)
T ss_pred EEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHH
Confidence 99999999999999976544 899999999999999999999999998999999999999999999999999999999
Q ss_pred HHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhH
Q psy852 222 KEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVL 301 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (891)
+++|+|+||||||||..+
T Consensus 292 ~~~g~~lHVDaA~gg~~~-------------------------------------------------------------- 309 (522)
T TIGR03799 292 QELGCHFHVDAAWGGATL-------------------------------------------------------------- 309 (522)
T ss_pred HHcCCeEEEEchhhhHHH--------------------------------------------------------------
Confidence 999777777777765443
Q ss_pred HHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEE
Q psy852 302 LSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCL 381 (891)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~ 381 (891)
++++++.+++|++.|||+++|+|||+++|++||++
T Consensus 310 ---------------------------------------------~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~l 344 (522)
T TIGR03799 310 ---------------------------------------------LSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMV 344 (522)
T ss_pred ---------------------------------------------hCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEE
Confidence 34455566788888999999999999999999999
Q ss_pred EEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCc
Q psy852 382 WVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPR 461 (891)
Q Consensus 382 ~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~ 461 (891)
++|++..+ ..+...++|+...
T Consensus 345 lvr~~~~~-~~~~~~~~Yl~~~---------------------------------------------------------- 365 (522)
T TIGR03799 345 LFKDPALM-SAIEHHAEYILRK---------------------------------------------------------- 365 (522)
T ss_pred EEeCHHHH-HHhccCcchhcCC----------------------------------------------------------
Confidence 99987432 2233333333110
Q ss_pred cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCc
Q psy852 462 FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSL 541 (891)
Q Consensus 462 ~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~m 541 (891)
T Consensus 366 -------------------------------------------------------------------------------- 365 (522)
T TIGR03799 366 -------------------------------------------------------------------------------- 365 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHhhhhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCcc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYL 621 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl 621 (891)
T Consensus 366 -------------------------------------------------------------------------------- 365 (522)
T TIGR03799 366 -------------------------------------------------------------------------------- 365 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCC
Q psy852 622 QHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSE 701 (891)
Q Consensus 622 ~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~ 701 (891)
...+++.+++++||+++++++|++|+.+|.+||+++++++++++++|.+.|++.|+|+++++|++++||||+.|.
T Consensus 366 -----~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~ 440 (522)
T TIGR03799 366 -----GSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPE 440 (522)
T ss_pred -----CCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeCh
Confidence 000122456778999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c----------------chhhhhhHHHHHHHHHhCCcEEEeecccc-------CCeEE-EEe-cCCCCHHHHHHHHHHH
Q psy852 702 N----------------NLIADQNNRKLLEDINASGRLHMVPASQE-------QNDEV-FEL-QERKRKDDLAYKRSFF 755 (891)
Q Consensus 702 ~----------------~~~~d~ln~~L~~~L~~~G~~~~s~s~~~-------g~~~l-~sv-~~~tT~edId~li~~L 755 (891)
. .+..|++|+++.++++++|.+|++.+.++ +..++ +++ ++.||.+||+.+++.=
T Consensus 441 ~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~ 519 (522)
T TIGR03799 441 EVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQ 519 (522)
T ss_pred hhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHh
Confidence 2 23468899999999999999999988765 34567 775 6689999999987653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=524.51 Aligned_cols=364 Identities=17% Similarity=0.194 Sum_probs=289.3
Q ss_pred hhhhHhhccCCCCCCc-cccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q psy852 3 LLFHFLSHQVTHWQHP-RFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPP 81 (891)
Q Consensus 3 ~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~ 81 (891)
.|.+.+.+++++|+|| ||++||++++++|+++|+++++++|+|+++|+.||++++||+++++|||+|+||+..
T Consensus 68 ~l~~~l~~~sv~~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~------ 141 (608)
T TIGR03811 68 ELSSRLRTESVPWHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNG------ 141 (608)
T ss_pred HHHHHHhcCCCCCCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCC------
Confidence 3567788999999999 999999999999999999999999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC--------cc-------------------
Q psy852 82 QGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP--------FV------------------- 134 (891)
Q Consensus 82 ~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~--------~~------------------- 134 (891)
||+| |+|||+ +|+..+.+||+.+. +| ..
T Consensus 142 --~G~~---------------------TsGGT~-ANl~aL~~AR~~k~-~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~ 196 (608)
T TIGR03811 142 --WGHI---------------------VADGSL-ANLEGLWYARNIKS-LPFAMKEVKPELVAGKSDWELLNMPTKEIMD 196 (608)
T ss_pred --CeEE---------------------eCChHH-HHHHHHHHHHHhhh-ccchhhhccccccccccchhhcccccccccc
Confidence 4554 579985 67888888998641 11 00
Q ss_pred ------------c-----cccccCCe-EEEecCCCChHHHHHHHHcC---CeEEEEecCCCCcccHHHHHHHHHhhhhcC
Q psy852 135 ------------D-----EGVLLSKL-MAYCSKEAHSCVEKAAMMAF---VRLKILEPDDKNSLRGATLRQVMQQDETMG 193 (891)
Q Consensus 135 ------------~-----~g~~~~~~-~v~~S~~~H~Sv~kaa~~~~---~~v~~V~~d~~g~id~~~L~~~l~~~~~~g 193 (891)
+ .|....++ ++++|+.+|||+.|++.+.| .+++.||+|++++||+++|+++|+++.++|
T Consensus 197 l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g 276 (608)
T TIGR03811 197 LLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEK 276 (608)
T ss_pred cccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcC
Confidence 0 01112334 79999999999999997644 389999999999999999999999999999
Q ss_pred CcceEEEeecccCccccccCHHHHHHHH---HHcCC--ceeeeccccCCc--cccCCCCccCCCCcccccCCCCcccccC
Q psy852 194 YIPFFVSTTLGTTSCCSFDNLAEIGPVA---KEFDV--WLHVDGAYAGSS--FICPEFRPFMNGKTSFDNLHLSPIWYER 266 (891)
Q Consensus 194 ~~p~~V~~t~Gtt~~GavDpl~~I~~i~---~~~~~--~lHvDaA~GG~~--~~~~~~~~~~~g~~~~d~~~~s~~~~~~ 266 (891)
.+|++||+|+|||++|+||||++|+++| +++|+ |+||||||||++ +++++..
T Consensus 277 ~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~--------------------- 335 (608)
T TIGR03811 277 TPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDD--------------------- 335 (608)
T ss_pred CCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccc---------------------
Confidence 9999999999999999999999999999 66887 699999999986 3433211
Q ss_pred CCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeecccc-Ccc
Q psy852 267 PSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYA-GSS 345 (891)
Q Consensus 267 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 345 (891)
...||.+.. .. ++ -.+.+. ...
T Consensus 336 ------------------------~~~p~~~~~---~~---------------------~~---------~~~~f~~~~~ 358 (608)
T TIGR03811 336 ------------------------NFIPYDDLQ---EV---------------------HA---------EYGVFTEKKE 358 (608)
T ss_pred ------------------------cccccchhh---cc---------------------cc---------cccccccccc
Confidence 011222111 00 00 000000 011
Q ss_pred ccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCC-cccccccccCCCCC-hhH
Q psy852 346 FICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG-AIDYRHWGIPLSRR-FRS 423 (891)
Q Consensus 346 ~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~sr~-~~~ 423 (891)
.++++.++.++||+.|||||+|||||+++||+||++++||+. +...+...++|+...... ....+.++++|||+ +++
T Consensus 359 ~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~A 437 (608)
T TIGR03811 359 YISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGADIPALLGAYILEGSKAGATA 437 (608)
T ss_pred cccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHH-HHHHHhcCcchhccccccCcccccccceecCCccHHH
Confidence 256788889999999999999999999999999999999985 666788899999764332 22567899999996 679
Q ss_pred HHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHhhcc------CCcccc--ccCCCCCcchhHHHHHH
Q psy852 424 LKLWFVIRTY--GLSGLQKYIRRHCELAKLFEGKVRR------DPRFEI--SNDVRSSASECIFVCML 481 (891)
Q Consensus 424 l~~w~~l~~~--g~~G~~~ii~~~lelAr~l~~~L~~------~~~~eV--v~~itsggsean~~al~ 481 (891)
+++|+++|.+ |.+||++++++++++|+++++.|++ .+.|++ +.+ ++.|++|+.
T Consensus 438 lklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~-----pdlniV~Fr 500 (608)
T TIGR03811 438 ASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTK-----PDFNMVDYV 500 (608)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCC-----CCcceEEEE
Confidence 9999999998 9999999999999999999999988 455665 332 455555543
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=468.23 Aligned_cols=342 Identities=24% Similarity=0.377 Sum_probs=304.7
Q ss_pred hhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q psy852 5 FHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGK 84 (891)
Q Consensus 5 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~ 84 (891)
-+..+..++...||||++...++..+.++.|.+++++.|+|.++|+.+|.++.+|.+|+..+.+++||+.+ ||
T Consensus 89 cr~tl~y~vKTgHprffNQl~~glD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~-------~D 161 (510)
T KOG0629|consen 89 CRDTLKYSVKTGHPRFFNQLSSGLDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEG-------GD 161 (510)
T ss_pred HHHHHHhhhccCCCcchhhhccCCCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCCCC-------CC
Confidence 34567888999999999999999999999999999999999999999999999999999999999999975 57
Q ss_pred CCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcccc-cc-ccCCeEEEecCCCChHHHHHHHHc
Q psy852 85 NATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDE-GV-LLSKLMAYCSKEAHSCVEKAAMMA 162 (891)
Q Consensus 85 g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~-g~-~~~~~~v~~S~~~H~Sv~kaa~~~ 162 (891)
|||+| ||++ +|++++++||.+ .+|++++ |. ..+.+++|+|+++|||+.|++.+.
T Consensus 162 gIf~p---------------------ggsi-sn~Ya~~~Aryk--~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~l 217 (510)
T KOG0629|consen 162 GIFAP---------------------GGSI-SNMYAMNCARYK--NFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFL 217 (510)
T ss_pred ceecC---------------------Cchh-HHHHHHHHHHhh--cCchhhhhhhhcCCcEEEEecccchhhHHHHHHHh
Confidence 88876 7776 578889999987 4888775 44 578999999999999999999643
Q ss_pred ---CCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCcc
Q psy852 163 ---FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSF 239 (891)
Q Consensus 163 ---~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~ 239 (891)
.++++.|++|+.|.|++++||+.|.+++++|..|++|++|+|||+.|+||||..|+++|++|++|+||||||||.++
T Consensus 218 g~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglL 297 (510)
T KOG0629|consen 218 GLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLL 297 (510)
T ss_pred ccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999877777777777666
Q ss_pred ccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccc
Q psy852 240 ICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVET 319 (891)
Q Consensus 240 ~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (891)
+++.
T Consensus 298 mS~k---------------------------------------------------------------------------- 301 (510)
T KOG0629|consen 298 MSRK---------------------------------------------------------------------------- 301 (510)
T ss_pred cChh----------------------------------------------------------------------------
Confidence 5544
Q ss_pred ccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccc
Q psy852 320 RGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLY 399 (891)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y 399 (891)
.|.++.|+++|||++.||||++++|..||++++|+..-|.......+.|
T Consensus 302 -------------------------------~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~Y 350 (510)
T KOG0629|consen 302 -------------------------------HRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIY 350 (510)
T ss_pred -------------------------------hHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhh
Confidence 4456678888999999999999999999999999888777777788999
Q ss_pred cCCCCC---CcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhH
Q psy852 400 LQHGHE---GAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECI 476 (891)
Q Consensus 400 ~~~~~~---~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean 476 (891)
+..+.. ..+|.++.+++|+|+...+|+|..+|+-|..||++.+.+++++|+|+.++|++.++++.+.. +.+|..
T Consensus 351 LFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~---~~pe~~ 427 (510)
T KOG0629|consen 351 LFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFE---LEPEHV 427 (510)
T ss_pred hhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhc---CCCceE
Confidence 987643 66889999999999999999999999999999999999999999999999999999888865 457889
Q ss_pred HHHHHHHHHHH
Q psy852 477 FVCMLAARAQA 487 (891)
Q Consensus 477 ~~al~aAR~~~ 487 (891)
++|+|......
T Consensus 428 nv~fw~vp~~l 438 (510)
T KOG0629|consen 428 NVCFWYVPPSL 438 (510)
T ss_pred EEeeccCchHh
Confidence 99998865443
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=443.06 Aligned_cols=307 Identities=19% Similarity=0.219 Sum_probs=254.6
Q ss_pred hhhhHhhccCCCCCCccccccCCCCCCH-HHHHHHHHHHhcCCCCCccccCh---hHHHHHHHHHHHHHHHcCCCCCCCC
Q psy852 3 LLFHFLSHQVTHWQHPRFHAYFPSGNSY-PSVLADMLSDAIGCIGFSWAASP---SCTELETIVLDWLGKAIGLPEKFLM 78 (891)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~~~~~~p---~~~~~E~~~~~~l~~l~g~~~~~~~ 78 (891)
.+.+.++|+.+| |+|| |...++ ++.+++++...+|+.|+.|..+| .++++|++|++|+++|+|+|+..
T Consensus 81 ~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~-- 152 (470)
T PLN02263 81 RYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNE-- 152 (470)
T ss_pred HHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCCCCCC--
Confidence 356677777777 8999 777777 89999999999999999999999 79999999999999999998642
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH
Q psy852 79 YPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA 158 (891)
Q Consensus 79 ~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka 158 (891)
.|||+ |+|||+ +|+..+..||+.. ++.++|+|+++|||+.||
T Consensus 153 -----------------~~G~v--------tsGGTE-aNL~Al~aARe~~------------~~~vvy~S~~aH~Sv~KA 194 (470)
T PLN02263 153 -----------------YWGYI--------TNCGTE-GNLHGILVGREVF------------PDGILYASRESHYSVFKA 194 (470)
T ss_pred -----------------CeEEE--------eCcHHH-HHHHHHHHHHhhc------------CCcEEEEcCCccHHHHHH
Confidence 13343 578974 6788888899963 234799999999999999
Q ss_pred HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCC-----ceeeecc
Q psy852 159 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDV-----WLHVDGA 233 (891)
Q Consensus 159 a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~-----~lHvDaA 233 (891)
+++.+.+++.||+|++|+||+++|+++|+++. .+|++|++|+|||.+|+||||++|+++|+++|+ |+|||||
T Consensus 195 a~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA 271 (470)
T PLN02263 195 ARMYRMECVKVDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGA 271 (470)
T ss_pred HHhcCCcceEeccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEecc
Confidence 99888899999999999999999999998764 469999999999999999999999999999985 6666666
Q ss_pred ccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccc
Q psy852 234 YAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEA 313 (891)
Q Consensus 234 ~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (891)
|||+++.+.
T Consensus 272 ~GG~~lPf~----------------------------------------------------------------------- 280 (470)
T PLN02263 272 LFGLMMPFV----------------------------------------------------------------------- 280 (470)
T ss_pred chhhHhhhc-----------------------------------------------------------------------
Confidence 666543211
Q ss_pred ccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhc
Q psy852 314 HSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSAL 393 (891)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~ 393 (891)
+..+.+++...+|||++|+|||+++|++||++++|+.. ...+
T Consensus 281 ------------------------------------~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~--~~~~ 322 (470)
T PLN02263 281 ------------------------------------KRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVL 322 (470)
T ss_pred ------------------------------------ccccccCCCcCccEEEECCccccCCCcCEEEEEEehhh--Hhhh
Confidence 11122344455999999999999999999999999753 3567
Q ss_pred ccCccccCCCCCCcccccccccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCc
Q psy852 394 VVDPLYLQHGHEGAIDYRHWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSA 472 (891)
Q Consensus 394 ~~~~~y~~~~~~~~~~~~~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsgg 472 (891)
..++.|+... +.+++|||++. ++++|++|+++|.+||++++++++++|+++.++|++. +++++.+
T Consensus 323 ~~~~~Yl~~~--------d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~----- 388 (470)
T PLN02263 323 SSNVEYLASR--------DATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLN----- 388 (470)
T ss_pred ccChHhhCCC--------CCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeC-----
Confidence 7899999764 45899999984 8999999999999999999999999999999999987 6666644
Q ss_pred chhHHHHHH
Q psy852 473 SECIFVCML 481 (891)
Q Consensus 473 sean~~al~ 481 (891)
++++.++|.
T Consensus 389 p~s~~V~f~ 397 (470)
T PLN02263 389 ELSSTVVFE 397 (470)
T ss_pred CCceEEEEe
Confidence 445555553
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=439.31 Aligned_cols=327 Identities=25% Similarity=0.328 Sum_probs=280.7
Q ss_pred HhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q psy852 7 FLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNA 86 (891)
Q Consensus 7 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~ 86 (891)
.+.+...++.||+++.|......++.+++..+.+.+|+|...|..+|.++++|+++++|+++|+|+|+.. .
T Consensus 51 ~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~-------~-- 121 (460)
T COG0076 51 LIKDELYLDGHPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEA-------S-- 121 (460)
T ss_pred hhcccccccCCcceEEEccCCCCCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCC-------c--
Confidence 3667778888999999999999999999999999999999999999999999999999999999999553 2
Q ss_pred CCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeE
Q psy852 87 TTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 166 (891)
Q Consensus 87 ~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v 166 (891)
|.+|+|||+ +|+..+.+||++.........+.....+.|++|+.+|+|+.|++.+.|..+
T Consensus 122 -------------------G~~t~GgTe-an~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~ 181 (460)
T COG0076 122 -------------------GTFTSGGTE-ANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGL 181 (460)
T ss_pred -------------------eEEEcChHH-HHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCc
Confidence 345789985 566677777776431111111222345589999999999999999888899
Q ss_pred EEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCC
Q psy852 167 KILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFR 245 (891)
Q Consensus 167 ~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~ 245 (891)
+.|++++ +++||+++|+++|++++..| +|++|+|||.+|++|||++|+++|+++++|+||||||||+++.+++++
T Consensus 182 ~~v~~~~~~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~ 257 (460)
T COG0076 182 RRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPD 257 (460)
T ss_pred eeEEeccCccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCcc
Confidence 9999888 89999999999999998766 799999999999999999999999999999999999999998766544
Q ss_pred ccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccc
Q psy852 246 PFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQS 325 (891)
Q Consensus 246 ~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (891)
+
T Consensus 258 ~------------------------------------------------------------------------------- 258 (460)
T COG0076 258 G------------------------------------------------------------------------------- 258 (460)
T ss_pred c-------------------------------------------------------------------------------
Confidence 3
Q ss_pred ccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCC
Q psy852 326 YRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE 405 (891)
Q Consensus 326 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~ 405 (891)
++..+++.||||++|+|||+++|++||++++||++.+...+...+.|+...
T Consensus 259 ---------------------------~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~-- 309 (460)
T COG0076 259 ---------------------------RWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGG-- 309 (460)
T ss_pred ---------------------------hhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCC--
Confidence 123467789999999999999999999999999988888888888888764
Q ss_pred CcccccccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHH
Q psy852 406 GAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLA 482 (891)
Q Consensus 406 ~~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~a 482 (891)
...++++.+||.+ .++++|+.++++|.+||++++++++++|+++++.|++.+.|++++++ +.+.+|+..
T Consensus 310 ---~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p-----~l~~V~fr~ 379 (460)
T COG0076 310 ---GIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP-----ELPIVAFRL 379 (460)
T ss_pred ---CcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC-----ccceEEEEc
Confidence 3457899999998 68999999999999999999999999999999999999889999873 566666654
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-45 Score=415.65 Aligned_cols=377 Identities=16% Similarity=0.186 Sum_probs=291.6
Q ss_pred CCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCC--CCCCCCCCCCCCCCC
Q psy852 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPE--KFLMYPPQGKNATTP 89 (891)
Q Consensus 12 ~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~--~~~~~~~~~~g~~tp 89 (891)
..+..||+|++|+.+++... +.+++...+|+|...|..+|..+++|+++++|+++++|+++ +.. +
T Consensus 37 ld~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~--------~--- 103 (431)
T TIGR01788 37 LDGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEA--------V--- 103 (431)
T ss_pred hcCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCC--------e---
Confidence 36778999999998765544 57888888888877888889888999999999999999983 211 1
Q ss_pred CCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEE
Q psy852 90 NDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKIL 169 (891)
Q Consensus 90 ~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V 169 (891)
+.+|+|||+++++.+.. +|.+.... ...+|....++.||+|+.+|+||.|++.+.+.+++.|
T Consensus 104 ----------------g~~TsGgTEAn~~al~~-ar~~~~~~-~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i 165 (431)
T TIGR01788 104 ----------------GTSTIGSSEAIMLGGLA-MKWRWRKR-MEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREV 165 (431)
T ss_pred ----------------EEEechHHHHHHHHHHH-HHHHHHHH-HHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEE
Confidence 12368999876665433 44321000 0011221235689999999999999998777899999
Q ss_pred ecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc------CCceeeeccccCCccccC
Q psy852 170 EPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF------DVWLHVDGAYAGSSFICP 242 (891)
Q Consensus 170 ~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~------~~~lHvDaA~GG~~~~~~ 242 (891)
|+|++ |+||+++|++.|+++ |++|++|+|||++|++|||++|+++|+++ ++|+||||||||+.+.+
T Consensus 166 ~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~- 238 (431)
T TIGR01788 166 PMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPF- 238 (431)
T ss_pred ecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHH-
Confidence 99986 599999999999876 57999999999999999999999999999 88999999998765411
Q ss_pred CCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccc
Q psy852 243 EFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGH 322 (891)
Q Consensus 243 ~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (891)
T Consensus 239 -------------------------------------------------------------------------------- 238 (431)
T TIGR01788 239 -------------------------------------------------------------------------------- 238 (431)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCC
Q psy852 323 IQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQH 402 (891)
Q Consensus 323 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~ 402 (891)
.+++.+..++ ++.+||+++|+|||+++|++||+|++|++..+...+...++|+..
T Consensus 239 ------------------------~~~~~~~~~~-~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~ 293 (431)
T TIGR01788 239 ------------------------VYPDLEWDFR-LPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGG 293 (431)
T ss_pred ------------------------hCCCchhhcC-CCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCC
Confidence 0011111112 456899999999999999999999999864343322222222211
Q ss_pred CCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHH
Q psy852 403 GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLA 482 (891)
Q Consensus 403 ~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~a 482 (891)
.
T Consensus 294 ~------------------------------------------------------------------------------- 294 (431)
T TIGR01788 294 D------------------------------------------------------------------------------- 294 (431)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEE
Q psy852 483 ARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFF 562 (891)
Q Consensus 483 AR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~ 562 (891)
T Consensus 295 -------------------------------------------------------------------------------- 294 (431)
T TIGR01788 295 -------------------------------------------------------------------------------- 294 (431)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc
Q psy852 563 VSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 563 VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
..+.++++||++
T Consensus 295 --------------------------------------------------------------------~~~~t~~~sR~g 306 (431)
T TIGR01788 295 --------------------------------------------------------------------EPTFTLNFSRPA 306 (431)
T ss_pred --------------------------------------------------------------------CCCcceecCchH
Confidence 001245557875
Q ss_pred -cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhC
Q psy852 643 -RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINAS 720 (891)
Q Consensus 643 -~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~ 720 (891)
+++++|+.|+.+|.+||+++++++++++++|.++|++.++|+++.+ +.+++|||++.+.+. .+..++++.++|+++
T Consensus 307 ~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~--~~~~~~~l~~~L~~~ 384 (431)
T TIGR01788 307 NQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDAD--PGYTLYDLSHRLRER 384 (431)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCC--CCcCHHHHHHHHHHC
Confidence 7889999999999999999999999999999999999999999987 799999999986431 123578899999999
Q ss_pred CcEE---EeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 721 GRLH---MVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 721 G~~~---~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
|+.+ .+++.+++..++ +++.++++.+.++.++++|++++.
T Consensus 385 G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~ 428 (431)
T TIGR01788 385 GWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALA 428 (431)
T ss_pred CCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 9874 556668888888 999999999999999999998874
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=386.69 Aligned_cols=291 Identities=20% Similarity=0.238 Sum_probs=232.9
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccC---hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 16 QHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAAS---PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 16 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~---p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
++..|+||......-++++..|+....|+.+..+..+ ..+.++|+++++|+++++|+++... +|+
T Consensus 22 ~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~------~G~------ 89 (374)
T PLN03032 22 KSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEY------WGY------ 89 (374)
T ss_pred hhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccC------CEE------
Confidence 3567999998887778899999998887666665544 4799999999999999999986531 233
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD 172 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d 172 (891)
+|+|||+++ ...+..+|+.. ++.++|+|+.+|+|+.|++.+.+..++.||+|
T Consensus 90 ---------------fTsGGTEaN-l~al~~ar~~~------------~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d 141 (374)
T PLN03032 90 ---------------ITTCGTEGN-LHGILVGREVF------------PDGILYASRESHYSVFKAARMYRMEAVKVPTL 141 (374)
T ss_pred ---------------EeCchHHHH-HHHHHHHHHhC------------CCcEEEeCCCceeHHHHHHHHcCCCCeEeeeC
Confidence 468998754 45555677642 12369999999999999998777789999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcC-----CceeeeccccCCccccCCCCcc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFD-----VWLHVDGAYAGSSFICPEFRPF 247 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~-----~~lHvDaA~GG~~~~~~~~~~~ 247 (891)
++|+||+++|+++|+++. ..|++|++|+|||++|++|||++|+++|+++| +|+||||||||+.+.+.+.
T Consensus 142 ~~g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~--- 215 (374)
T PLN03032 142 PSGEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR--- 215 (374)
T ss_pred CCCcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCC---
Confidence 999999999999998753 35899999999999999999999999999996 3667777766643211000
Q ss_pred CCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccc
Q psy852 248 MNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYR 327 (891)
Q Consensus 248 ~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (891)
T Consensus 216 -------------------------------------------------------------------------------- 215 (374)
T PLN03032 216 -------------------------------------------------------------------------------- 215 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCc
Q psy852 328 DAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGA 407 (891)
Q Consensus 328 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~ 407 (891)
.|. ++....+||+++|+|||+++|++||+|++|+.. ...+..+++|+...
T Consensus 216 --------------------~~~----~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~--~~~~~~~~~Yl~~~---- 265 (374)
T PLN03032 216 --------------------APE----VTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH--VKALSQNVEYLNSR---- 265 (374)
T ss_pred --------------------Ccc----cCCCcCCcEEEECcccccCCCcCeEEEEEEchh--hHhhccCCcccCCC----
Confidence 111 122235899999999999999999999999753 34466788998753
Q ss_pred ccccccccCCCCC-hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 408 IDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 408 ~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
++|++|||+ ++++++|++|+++|.+||++++++++++|+++.++|++. +++++..
T Consensus 266 ----d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~ 321 (374)
T PLN03032 266 ----DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLN 321 (374)
T ss_pred ----CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEC
Confidence 579999997 579999999999999999999999999999999999885 6777644
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=373.43 Aligned_cols=299 Identities=20% Similarity=0.298 Sum_probs=236.5
Q ss_pred CCccccccCCCCCCH-HHHHHHHHHHhcCCCCCccccCh---hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy852 16 QHPRFHAYFPSGNSY-PSVLADMLSDAIGCIGFSWAASP---SCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND 91 (891)
Q Consensus 16 ~~p~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~~~~~~p---~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~ 91 (891)
+||+++.++|...++ ++.+++++....|+.+.....+. .++++|+++++|+|+++|++++.. +|
T Consensus 20 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~------~G------ 87 (380)
T PRK02769 20 HNQYFNVGYPEAADFDYSALKRFFSFSINNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNES------WG------ 87 (380)
T ss_pred HhhhcccCCCchhhcCHHHHHHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCC------CE------
Confidence 478877777766666 79999999999887664433332 489999999999999999986531 22
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP 171 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~ 171 (891)
+ +|+|||++ |...+..+|+.. ++..||+|+.+|+|+.|++++.+.+.+.|++
T Consensus 88 -------~--------~TsGgTea-n~~a~~~ar~~~------------~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~ 139 (380)
T PRK02769 88 -------Y--------ITNGGTEG-NLYGCYLARELF------------PDGTLYYSKDTHYSVSKIARLLRIKSRVITS 139 (380)
T ss_pred -------E--------EecChHHH-HHHHHHHHHHhC------------CCcEEEeCCCceehHHHHHHHcCCCCceecc
Confidence 2 45899876 555566677642 1246999999999999999877778889999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcC---CceeeeccccCCccccCCCCccC
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFD---VWLHVDGAYAGSSFICPEFRPFM 248 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~---~~lHvDaA~GG~~~~~~~~~~~~ 248 (891)
+++|+||+++|++.|+++ |..|.+|++|+|||++|++|||++|+++|+++| +|+||||||||+.+.+.+..
T Consensus 140 ~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~--- 213 (380)
T PRK02769 140 LPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNP--- 213 (380)
T ss_pred CCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCcc---
Confidence 999999999999999876 667899999999999999999999999999998 58888888877654221100
Q ss_pred CCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccc
Q psy852 249 NGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRD 328 (891)
Q Consensus 249 ~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (891)
T Consensus 214 -------------------------------------------------------------------------------- 213 (380)
T PRK02769 214 -------------------------------------------------------------------------------- 213 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcc
Q psy852 329 AIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 408 (891)
Q Consensus 329 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~ 408 (891)
+.++....+||+++|+|||+++|++||++++|++. + ..+..++.|+..
T Consensus 214 ------------------------~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~-~-~~~~~~~~yl~~------ 261 (380)
T PRK02769 214 ------------------------PPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY-V-ERISVDVDYIGS------ 261 (380)
T ss_pred ------------------------ccCCccCCCCEEEECCcccCCCCCCcEEEEEehhh-h-hhcccCccccCC------
Confidence 01111225899999999999999999999999754 2 234456777753
Q ss_pred cccccccCCCCC-hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHH
Q psy852 409 DYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCM 480 (891)
Q Consensus 409 ~~~~~~~~~sr~-~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al 480 (891)
.+++++|||+ ++++++|++|+++|.+|+++++++++++++|+.++|++ .+++++.+ +.++.++|
T Consensus 262 --~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~-~g~~~~~~-----p~~~~v~f 326 (380)
T PRK02769 262 --RDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA-NGIPAWRN-----PNSITVVF 326 (380)
T ss_pred --CCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEcC-----CCceEEEE
Confidence 2568999997 57899999999999999999999999999999999987 58888865 34445554
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=364.88 Aligned_cols=255 Identities=31% Similarity=0.543 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcc----ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCcccccccc-ccceEEEecc
Q psy852 439 QKYIRRHCELAKLFEGKVRRDPRF----EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVL-LSKLMAYCSK 513 (891)
Q Consensus 439 ~~ii~~~lelAr~l~~~L~~~~~~----eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~-~~~~vI~~S~ 513 (891)
.....-+.++.+++.+.+.-...+ +-.|-+|+|||++|++|+++||+++.++.+. .|.. .++++||+|+
T Consensus 75 P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~------~~~~~~~~~~i~~s~ 148 (373)
T PF00282_consen 75 PAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKA------KGVEEIPKPVIYVSE 148 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHH------HTTTHCSSEEEEEET
T ss_pred cccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhh------ccccccccccccccc
Confidence 344556677788888887653211 2456689999999999999999999876542 2222 5789999999
Q ss_pred cchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh------
Q psy852 514 EAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR------ 574 (891)
Q Consensus 514 ~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~------ 574 (891)
++|||+.|+|.++|+.++.||+|++|+||+++|+++|+++.++|.+|++|++++|||. |.+
T Consensus 149 ~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlH 228 (373)
T PF00282_consen 149 QAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLH 228 (373)
T ss_dssp TS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEE
T ss_pred ccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeee
Confidence 9999999999999999999999999999999999999999999999999999999998 221
Q ss_pred -----------------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCC---CCCccccCC
Q psy852 575 -----------------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH---EGAIDYRHW 634 (891)
Q Consensus 575 -----------------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~---e~~~~~~~~ 634 (891)
++.|+++||||++|+||||++|++||++++|++..+...+...+.|+.+.. ...+++.++
T Consensus 229 VDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~ 308 (373)
T PF00282_consen 229 VDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDY 308 (373)
T ss_dssp EEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEG
T ss_pred ecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccc
Confidence 356789999999999999999999999999999988888888899998543 245678899
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEec
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLR 699 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~ 699 (891)
++++||++++|++|++|+.+|.+||++++++.+++|++|.++|++.+.|++++++.+++||||++
T Consensus 309 tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 309 TLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRYK 373 (373)
T ss_dssp SSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEES
T ss_pred cccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999985
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=320.89 Aligned_cols=286 Identities=21% Similarity=0.299 Sum_probs=245.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccc-cccceEEEecccchHHHHHHHHHcC---ceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGV-LLSKLMAYCSKEAHSCVEKAAMMAF---VRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~-~~~~~vI~~S~~aH~Sv~Kaa~l~g---v~v~~Vp~d~~G~mD~ 543 (891)
+..||+-+|++++.+||.+..+..+. .|. ..+++++|+|+++|||+.|+|+++| -+++.|++|+.|.|++
T Consensus 164 f~pggsisn~Ya~~~Aryk~~Pe~K~------~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~ 237 (510)
T KOG0629|consen 164 FAPGGSISNMYAMNCARYKNFPEVKT------KGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIP 237 (510)
T ss_pred ecCCchhHHHHHHHHHHhhcCchhhh------hhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccch
Confidence 44599999999999999987766442 354 3679999999999999999998655 3899999999999999
Q ss_pred HHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----------------------hhcCCCCccEEEE
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----------------------KSQGIEYADSFNV 587 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----------------------~ldGi~~aDSIs~ 587 (891)
++||+.|-+.+++|.+|++|++|+|||. |.+ .+.|+++|||+|+
T Consensus 238 ~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~Svtw 317 (510)
T KOG0629|consen 238 DDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTW 317 (510)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceee
Confidence 9999999999999999999999999998 532 3678999999999
Q ss_pred cCcccCCcccccEEEEEeCCccchhhhccCCCccccCC---CCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHH
Q psy852 588 NVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH---EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIR 664 (891)
Q Consensus 588 d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~---e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~ 664 (891)
+|||++++|..||++++|....|......++.||...+ +..++.++.+++|+|+.+.+|+|++|+.-|..|+++.++
T Consensus 318 npHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~ 397 (510)
T KOG0629|consen 318 NPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVD 397 (510)
T ss_pred cHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHH
Confidence 99999999999999999999888888888899998653 356788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCc----------chhhhhhHHHHHHHHHhCCcEEEeeccccC
Q psy852 665 RHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSEN----------NLIADQNNRKLLEDINASGRLHMVPASQEQ 732 (891)
Q Consensus 665 ~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~----------~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g 732 (891)
+++++|+||.++|++.++++++.+ |+...|||++.|.. ...+....-.+..++..+|..+++...+..
T Consensus 398 k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~ 477 (510)
T KOG0629|consen 398 KCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGD 477 (510)
T ss_pred HHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEeccccc
Confidence 999999999999999999888644 78889999998863 123444555788889999999888777655
Q ss_pred CeEE--EEecC-CCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV--FELQE-RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l--~sv~~-~tT~edId~li~~L~ei~ 759 (891)
+.-+ .++++ ..+.+|+|.+++.|+.+.
T Consensus 478 ~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 478 KPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred ccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 5433 44444 679999999999998775
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=334.77 Aligned_cols=272 Identities=14% Similarity=0.134 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHH-----HHhhhcc-----Ccc---------------
Q psy852 443 RRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQA-----ISKLKKI-----HPF--------------- 497 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~-----~~~~~~~-----~~~--------------- 497 (891)
.-+.++.+++.+++.=.+ -+|-+|+|||+||+.|||+||+.. .+..... .++
T Consensus 123 ~lE~~vi~~la~l~G~~~---~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~ 199 (608)
T TIGR03811 123 QMEEEVGKEFATLMGYKN---GWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLE 199 (608)
T ss_pred HHHHHHHHHHHHHhCCCC---CCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccccccccc
Confidence 345566667777775322 246689999999999999999864 1110000 000
Q ss_pred ---------c----cccccccce-EEEecccchHHHHHHHHHcCc---eEEEecCCCCCCcCHHHHHHHHHhhhhcCCcc
Q psy852 498 ---------V----DEGVLLSKL-MAYCSKEAHSCVEKAAMMAFV---RLKILEPDDKNSLRGATLRQVMQQDETMGYIP 560 (891)
Q Consensus 498 ---------~----~~g~~~~~~-vI~~S~~aH~Sv~Kaa~l~gv---~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip 560 (891)
. ..|....++ ++++|+.+|||+.|||.++|+ +++.||+|++++||+++|+++|+++.++|..|
T Consensus 200 ~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~ 279 (608)
T TIGR03811 200 SAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPI 279 (608)
T ss_pred ccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCe
Confidence 0 011122333 799999999999999998877 69999999999999999999999999999999
Q ss_pred EEEEecCCccc-------------hh---h-------h------------------------------------------
Q psy852 561 FFVSTTLGTTS-------------CY---R-------K------------------------------------------ 575 (891)
Q Consensus 561 ~~VvataGTT~-------------c~---~-------~------------------------------------------ 575 (891)
++|++++|||. |. + |
T Consensus 280 ~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~ 359 (608)
T TIGR03811 280 LGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEY 359 (608)
T ss_pred EEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccccccccccccccc
Confidence 99999999998 31 1 2
Q ss_pred --------hcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCc-cccCCccccccc-ccch
Q psy852 576 --------SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI-DYRHWGIPLSRR-FRSL 645 (891)
Q Consensus 576 --------ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~-~~~~~ti~~SRr-~~aL 645 (891)
++|+++|||||+|||||+++|++||++++|++. +...+...+.|+.......+ ..+.+++++||+ ++++
T Consensus 360 l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~Al 438 (608)
T TIGR03811 360 ISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAA 438 (608)
T ss_pred ccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHH-HHHHHhcCcchhccccccCcccccccceecCCccHHHH
Confidence 225689999999999999999999999999995 66778889999975432222 457789999996 8899
Q ss_pred HHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhcc------CCCcEE--eCCCceeEEEEEecCCcc---hhhhhhHHH
Q psy852 646 KLWFVIRTY--GLSGLQKYIRRHCELAKLFEGKVRR------DPRFEI--SNDVRLGLVCFRLRSENN---LIADQNNRK 712 (891)
Q Consensus 646 ~lW~~L~~l--G~~G~~~~i~~~~~lA~~L~~~L~~------~~~~ei--l~~~~~~iV~Fr~~~~~~---~~~d~ln~~ 712 (891)
++|++++.+ |.+||++++++++++|++|.+.|++ .+.|++ +.+|++++|||||.+.+. +..|.+|++
T Consensus 439 klW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g~~~l~~~n~ln~~ 518 (608)
T TIGR03811 439 SVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKGNDDLVKMNKLNHA 518 (608)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecCCCccHHHHHHHHHH
Confidence 999999999 9999999999999999999999988 567887 789999999999988764 468999999
Q ss_pred HHHHHH
Q psy852 713 LLEDIN 718 (891)
Q Consensus 713 L~~~L~ 718 (891)
+.+++.
T Consensus 519 i~~~~~ 524 (608)
T TIGR03811 519 FYDYAS 524 (608)
T ss_pred HHHhhc
Confidence 999987
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=323.85 Aligned_cols=265 Identities=16% Similarity=0.145 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
-+.++-+++++++.--+ -+.+|-+|+||||+|++|+++||+.+ ++.++|+|+++|||+.|||
T Consensus 134 ~E~~Vi~wla~L~g~p~-~~~~G~vtsGGTEaNL~Al~aARe~~-----------------~~~vvy~S~~aH~Sv~KAa 195 (470)
T PLN02263 134 FEVGVLDWFARLWEIEK-NEYWGYITNCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAA 195 (470)
T ss_pred HHHHHHHHHHHHhCCCC-CCCeEEEeCcHHHHHHHHHHHHHhhc-----------------CCcEEEEcCCccHHHHHHH
Confidence 44566677777776422 14467799999999999999999953 2347999999999999999
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh----------hhcC--
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR----------KSQG-- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~----------~ldG-- 578 (891)
+++|++++.||+|++|+||+++|+++|++++ ..|++|++++|||. |.+ |+||
T Consensus 196 ~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~ 272 (470)
T PLN02263 196 RMYRMECVKVDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGAL 272 (470)
T ss_pred HhcCCcceEeccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccc
Confidence 9999999999999999999999999998864 46999999999998 321 3443
Q ss_pred ----------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc
Q psy852 579 ----------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 579 ----------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
.+.||||++|+|||+++|++||++++|++. ...+..++.|+... +.++.+||++
T Consensus 273 GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~--~~~~~~~~~Yl~~~--------d~ti~gSR~g 342 (470)
T PLN02263 273 FGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLASR--------DATIMGSRNG 342 (470)
T ss_pred hhhHhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehhh--HhhhccChHhhCCC--------CCCcCCCCCc
Confidence 345999999999999999999999999753 35667788998763 3578999996
Q ss_pred -cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 643 -RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 643 -~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
+++++|++|+.+|.+||++++++++++|++|.++|++. +++++.+|.+++|+|+-+.. . +..+|
T Consensus 343 ~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~~------~--------~~~~g 407 (470)
T PLN02263 343 HAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPKD------E--------EFVRR 407 (470)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCch------H--------Hhhcc
Confidence 58999999999999999999999999999999999997 77777788999999985321 0 12355
Q ss_pred cEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 722 ~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+. ++. . +..+ ++++++.+.+.||+|+++|++..
T Consensus 408 W~-L~~---~-~~~~Hivvmphv~~~~id~fi~DL~~~~ 441 (470)
T PLN02263 408 WQ-LAC---Q-GNIAHVVVMPSVTIEKLDYFLKELVEKR 441 (470)
T ss_pred eE-Ecc---C-CCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 54 222 1 1347 88999899999999999998775
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=328.47 Aligned_cols=246 Identities=24% Similarity=0.310 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH
Q psy852 440 KYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 519 (891)
Q Consensus 440 ~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv 519 (891)
....-+.++...+.+.+... -+..|.+|+||||||+.|+++||+++.+..... .+.....|+||+|..+|+|+
T Consensus 98 ~a~~~E~~~v~~l~~l~~~~--~~~~G~~t~GgTean~lal~aar~~~~~~~~~~-----~~~~~~~P~ii~s~~aH~s~ 170 (460)
T COG0076 98 AAAELEERVVNMLSDLLGAP--EEASGTFTSGGTEANLLALLAARERWRKRALAE-----SGKPGGKPNIVCSETAHFSF 170 (460)
T ss_pred hHHHHHHHHHHHHHHHhCCC--CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhc-----ccccCCCCeEEecCcchhHH
Confidence 45555666777777777653 256788999999999999999999998654321 23345678999999999999
Q ss_pred HHHHHHcCceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----------
Q psy852 520 EKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR----------- 574 (891)
Q Consensus 520 ~Kaa~l~gv~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~----------- 574 (891)
.|+|.++|++.+.+|+++ +++||+++|+++|++++..| +|++++|||. |.+
T Consensus 171 ~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~ 246 (460)
T COG0076 171 EKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAF 246 (460)
T ss_pred HHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccc
Confidence 999999999999999988 89999999999999998876 8999999997 211
Q ss_pred ------------h-hcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc
Q psy852 575 ------------K-SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR 641 (891)
Q Consensus 575 ------------~-ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr 641 (891)
+ ..++++||||++|+|||+++|+|||++++||++.+.+.+.....|+... ...++++.+||+
T Consensus 247 GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~-----~~~~~ti~~sr~ 321 (460)
T COG0076 247 GGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGG-----GIPNFTILGSRP 321 (460)
T ss_pred cceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCC-----CcCceeEeeccc
Confidence 2 4678999999999999999999999999999988888888888888653 345788899997
Q ss_pred c-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCC
Q psy852 642 F-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSE 701 (891)
Q Consensus 642 ~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~ 701 (891)
. +++++|++++.+|.+||+++++++++++++|+++|++.+.|+++++|.+++||||+++.
T Consensus 322 ~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~ 382 (460)
T COG0076 322 GRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDD 382 (460)
T ss_pred hHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCc
Confidence 4 78999999999999999999999999999999999999999999999999999999543
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=308.54 Aligned_cols=187 Identities=34% Similarity=0.580 Sum_probs=151.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDY 99 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~ 99 (891)
|+++++++++.+++++++++..+|+|...|..+|..+++|+++.+|+++++|++... ..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~------~~~~------------- 61 (345)
T cd06450 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSED------ADGV------------- 61 (345)
T ss_pred CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCC------CCEE-------------
Confidence 688999999999999999999999999999999999999999999999999997221 1222
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHHHhccccCCccc-ccc-ccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcc
Q psy852 100 MTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVD-EGV-LLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSL 177 (891)
Q Consensus 100 ~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~-~g~-~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~i 177 (891)
+|+|||.. +...+..++.+.. +..+ .+. ..++.+|++|..+|+|+.+++...+.+++.|++|++|.+
T Consensus 62 --------~t~ggt~a-~~~al~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~ 130 (345)
T cd06450 62 --------FTSGGSES-NLLALLAARDRAR--KRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRM 130 (345)
T ss_pred --------EeCChhHH-HHHHHHHHHHHhh--hhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCc
Confidence 45788754 4444444444311 1111 011 123568999999999999999777889999999999999
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG 236 (891)
|+++|++.+.++.++|..|.+|+++.++|.+|.++|+++|+++|+++|+|+|+|+||++
T Consensus 131 d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 131 DPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred CHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 99999999998777777788999999999999999999999999999888888888743
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=292.28 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=145.7
Q ss_pred ccccccCCCCCCHHHHHHHHHHHh---cCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDA---IGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~---~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
+-|++|-.+.+..|.++..|+..+ +++....|..+..+..+-.++.+++|+++|.++...
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eI----------------- 64 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEI----------------- 64 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeE-----------------
Confidence 569999999999999998887764 333344888899999999999999999999987532
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH---cCCeEEEEec
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKILEP 171 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~---~~~~v~~V~~ 171 (891)
.||||||+++|+.+.+++...... ..+-.|++|..||.||..+++. .|.+|.++||
T Consensus 65 ------------iFTSG~TEsnNlaI~g~~~a~~~~---------~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V 123 (386)
T COG1104 65 ------------IFTSGATESNNLAIKGAALAYRNA---------QKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV 123 (386)
T ss_pred ------------EEecCCcHHHHHHHHhhHHhhhcc---------cCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCC
Confidence 278999999999988753322100 0112399999999999999953 4789999999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
|.+|++|+++|+++|++++ ++|++.++|||+|+++||++|+++|++++++||+||++
T Consensus 124 ~~~G~v~~e~L~~al~~~T------~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQ 180 (386)
T COG1104 124 DSNGLVDLEQLEEALRPDT------ILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQ 180 (386)
T ss_pred CCCCeEcHHHHHHhcCCCc------eEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhh
Confidence 9999999999999999884 79999999999999999999999999999999999988
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-31 Score=296.68 Aligned_cols=261 Identities=16% Similarity=0.175 Sum_probs=210.8
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.+..+++++.+...+. ++++-+||||||+|++|+++||+.. ++.++|+|+.+|+|+.|++++
T Consensus 69 ~~v~~~ia~llg~~~~-~~~G~fTsGGTEaNl~al~~ar~~~-----------------~~~~vi~s~~~H~Sv~kaa~~ 130 (374)
T PLN03032 69 VGVLDWFARLWELEKD-EYWGYITTCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARM 130 (374)
T ss_pred HHHHHHHHHHhCCCCc-cCCEEEeCchHHHHHHHHHHHHHhC-----------------CCcEEEeCCCceeHHHHHHHH
Confidence 3444577777766443 5666799999999999999998742 123799999999999999999
Q ss_pred cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh----------hhcC----
Q psy852 526 AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR----------KSQG---- 578 (891)
Q Consensus 526 ~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~----------~ldG---- 578 (891)
++++++.||+|++|+||+++|+++|++++ ..|++|++++|||. |.+ |+|+
T Consensus 131 lg~~~~~V~~d~~g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg 207 (374)
T PLN03032 131 YRMEAVKVPTLPSGEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFG 207 (374)
T ss_pred cCCCCeEeeeCCCCcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchh
Confidence 99999999999999999999999998753 25888888888886 322 4443
Q ss_pred --------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-cc
Q psy852 579 --------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FR 643 (891)
Q Consensus 579 --------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~ 643 (891)
...||||++|+|||+++|+|||++++|++. .+.+..++.|+... ++|+++||+ ++
T Consensus 208 ~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~--~~~~~~~~~Yl~~~--------d~ti~gSR~g~~ 277 (374)
T PLN03032 208 LMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH--VKALSQNVEYLNSR--------DATIMGSRNGHA 277 (374)
T ss_pred hhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchh--hHhhccCCcccCCC--------CCcccCCCchHH
Confidence 245899999999999999999999999753 34566778898653 468999996 78
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
++++|++|+++|.+||++++++++++|++|.++|++. +++++.+|.+++|+|+-+.. + . +. +|+.
T Consensus 278 ~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~~~-----~----~----~~-~~w~ 342 (374)
T PLN03032 278 PLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERPMD-----E----A----FI-KKWQ 342 (374)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCCCc-----H----h----Hh-heee
Confidence 9999999999999999999999999999999999985 78888888999999997521 1 1 22 3443
Q ss_pred EEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 724 HMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 724 ~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
+++. +..+ ++++++++.+.||+|+++|++
T Consensus 343 -l~~~----~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 343 -LACE----GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred -eccc----CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 2221 1267 999999999999999999875
|
|
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=290.98 Aligned_cols=292 Identities=39% Similarity=0.612 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH
Q psy852 441 YIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 520 (891)
Q Consensus 441 ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~ 520 (891)
++.+.+.+-+.|...=.. +| -|-+++++||++++++++||.+.+++.+..+|...+.....++|+|||+++|+|++
T Consensus 121 WL~kml~LP~~Fl~~~~g-~G---gGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssve 196 (511)
T KOG0628|consen 121 WLGKMLGLPAEFLSLGLG-DG---GGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVE 196 (511)
T ss_pred HHHHHhcCcHHHhccCCC-CC---cceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHH
Confidence 344445555544443322 23 23467889999999999999999999887788888888899999999999999999
Q ss_pred HHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-------------
Q psy852 521 KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR------------- 574 (891)
Q Consensus 521 Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~------------- 574 (891)
|||.++++++|.+|+|+++.|+.+.|+++|++|.++|++||+|++|.|||. |.+
T Consensus 197 ka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAG 276 (511)
T KOG0628|consen 197 KACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAG 276 (511)
T ss_pred HhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhhcCEEEEeehhhcc
Confidence 999999999999999999999999999999999999999999999999998 211
Q ss_pred ----------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccc
Q psy852 575 ----------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRS 644 (891)
Q Consensus 575 ----------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~a 644 (891)
.++|+++|||+++++|||+++.++|+.+++|++..+..++..++.||.+. . +.+ ..-
T Consensus 277 sa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~--~---------~~~--~~D 343 (511)
T KOG0628|consen 277 SAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHA--Y---------QGS--APD 343 (511)
T ss_pred ccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcch--h---------hcc--CCC
Confidence 36889999999999999999999999999999999988888999998752 0 000 011
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 645 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 645 L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
++.|..-. ....++--++|.++..
T Consensus 344 yrhwqipl---------------------------------~rRfRSLKlWfv~R~~----------------------- 367 (511)
T KOG0628|consen 344 YRHWQIPL---------------------------------GRRFRSLKLWFVLRSY----------------------- 367 (511)
T ss_pred cccccccc---------------------------------ccchhhHHHHHHHHHH-----------------------
Confidence 11111110 0000000111111100
Q ss_pred EeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCcccccCCCcccceEEeecccchhhhhhhhHHHHH
Q psy852 725 MVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLE 804 (891)
Q Consensus 725 ~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~~~~~~~~gl~~~r~~~~~~~~~~~~~~~~~~ 804 (891)
--+-+..-+..=.++++.|+++++....|+++++..+||||||+++. ++.|++++.
T Consensus 368 -------------------Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~-----N~~ne~Ll~ 423 (511)
T KOG0628|consen 368 -------------------GVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGD-----NEINEALLN 423 (511)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCC-----cHHHHHHHH
Confidence 11223333344456788899999999999999999999999999995 778889999
Q ss_pred HHHhhccccCCcccHHHHHhhhcccccccceEEEEecc
Q psy852 805 DINASGRLHMVPASFELQERKRKDDLAYKRSFFVRMVS 842 (891)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (891)
.||.+|++|+++... +.-|+.||+-
T Consensus 424 ~in~~g~i~l~~~~l-------------~gk~vlRf~V 448 (511)
T KOG0628|consen 424 RLNSSGRIHLVPASL-------------HGKFVLRFAV 448 (511)
T ss_pred HHHhcCcEEEEEeee-------------cceEEEEEEe
Confidence 999999999998764 3458999864
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=281.73 Aligned_cols=263 Identities=16% Similarity=0.221 Sum_probs=211.8
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
+.+..+++++.+...++ ++++.+|+||||+|++++++||+.. +..+||+|+.+|+|+.|+++
T Consensus 67 e~~~~~~~a~l~g~~~~-~~~G~~TsGgTean~~a~~~ar~~~-----------------~~~~ii~s~~~H~Sv~ka~~ 128 (380)
T PRK02769 67 ERDVMNFFAELFKIPFN-ESWGYITNGGTEGNLYGCYLARELF-----------------PDGTLYYSKDTHYSVSKIAR 128 (380)
T ss_pred HHHHHHHHHHHhCCCCC-CCCEEEecChHHHHHHHHHHHHHhC-----------------CCcEEEeCCCceehHHHHHH
Confidence 33555577777765433 4567799999999999999999732 12479999999999999999
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh--------hhcC-----
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR--------KSQG----- 578 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~--------~ldG----- 578 (891)
+++++.+.||++++|+||+++|+++|+++ +..|.+|++++|||. |++ |+||
T Consensus 129 ~lg~~~~~V~~~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~ 205 (380)
T PRK02769 129 LLRIKSRVITSLPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGM 205 (380)
T ss_pred HcCCCCceeccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccce
Confidence 99999999999999999999999999886 556889999999987 322 2333
Q ss_pred -------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccc
Q psy852 579 -------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRS 644 (891)
Q Consensus 579 -------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~a 644 (891)
.+++|||++|+|||+++|+|||++++|++. + ..+.....|+.. .+.++++||+ +++
T Consensus 206 ~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~-~-~~~~~~~~yl~~--------~d~t~~GSR~g~~~ 275 (380)
T PRK02769 206 ILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY-V-ERISVDVDYIGS--------RDQTISGSRNGHTA 275 (380)
T ss_pred eecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhh-h-hhcccCccccCC--------CCCCccCCCCcHHH
Confidence 246999999999999999999999999763 2 234445677653 2458899996 789
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 645 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 645 L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
+++|++|+.+|.+|++++++++++++++|.++|++ .+++++.+|.+++|+|+.+.. .+. +|+.
T Consensus 276 l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~-~g~~~~~~p~~~~v~f~~~~~----------~~~-----~~w~- 338 (380)
T PRK02769 276 LLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA-NGIPAWRNPNSITVVFPCPSE----------RIW-----KKWH- 338 (380)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEcCCCceEEEEcCCCH----------HHH-----hCee-
Confidence 99999999999999999999999999999999988 589999999999999986421 121 4433
Q ss_pred EeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 725 MVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 725 ~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++. +..+ +++++++|.+.||.++++|.+..
T Consensus 339 l~~~----~~~~hi~~~~~~~~~~~~~f~~dl~~~~ 370 (380)
T PRK02769 339 LATS----GNQAHIITMPHHNKQQIDSLIDELIFDL 370 (380)
T ss_pred Eccc----CCEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 2222 1367 99999999999999999998775
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=292.19 Aligned_cols=290 Identities=26% Similarity=0.442 Sum_probs=212.0
Q ss_pred HHHHHHHHHHhhccCCcc----ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH
Q psy852 445 HCELAKLFEGKVRRDPRF----EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 520 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~----eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~ 520 (891)
+.++.+++.+.+.--+.| .--+-+++||||||++|+++||+++.++... . ..++++||+|+++|+|+.
T Consensus 172 E~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~------~--~~~~~vvy~S~~aH~Sv~ 243 (539)
T PLN02590 172 EIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGK------T--LLPQLVVYGSDQTHSSFR 243 (539)
T ss_pred HHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcc------c--CCCCEEEEecCCchHHHH
Confidence 444555666666422211 1235579999999999999999987643210 1 236789999999999999
Q ss_pred HHHHHcCc---eEEEecCC--CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh--------
Q psy852 521 KAAMMAFV---RLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-------- 574 (891)
Q Consensus 521 Kaa~l~gv---~v~~Vp~d--~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-------- 574 (891)
|||+++|+ +++.||+| .+++||+++|+++|++++++|.+|++|++|+|||. |.+
T Consensus 244 KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVD 323 (539)
T PLN02590 244 KACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVD 323 (539)
T ss_pred HHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEe
Confidence 99998877 69999998 46899999999999999999999999999999998 322
Q ss_pred ---------------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccc
Q psy852 575 ---------------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLS 639 (891)
Q Consensus 575 ---------------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~S 639 (891)
.++|+++||||++|+||||++|++||++++|++..+..++...+.|+....... +-....
T Consensus 324 aA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~----~~~~d~- 398 (539)
T PLN02590 324 AAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKK----DTVVNY- 398 (539)
T ss_pred cchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCccccc----ccCCCc-
Confidence 367899999999999999999999999999999888888888888876432100 000000
Q ss_pred ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 640 RRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 640 Rr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
.. -.+++ +.+ | ..-++--.|+.
T Consensus 399 ------------~d---------------------------~~i~l-sRr------~------------raLklW~~lr~ 420 (539)
T PLN02590 399 ------------KD---------------------------WQISL-SRR------F------------RSLKLWMVLRL 420 (539)
T ss_pred ------------cc---------------------------cCCCC-CCc------h------------HHHHHHHHHHH
Confidence 00 00010 000 0 11122222222
Q ss_pred CCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCcccccCCCcccceEEeeccc--chhhhhh
Q psy852 720 SGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLIADHPLQLGLVCFRLRSE--NNVIADQ 797 (891)
Q Consensus 720 ~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~~~~~~~~gl~~~r~~~~--~~~~~~~ 797 (891)
- -.+-+.+.++..-++++.+.+.+++.+.|++..++.++||||||.+. .++..+.
T Consensus 421 ~-----------------------G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ 477 (539)
T PLN02590 421 Y-----------------------GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNE 477 (539)
T ss_pred H-----------------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHH
Confidence 1 33566777777778888888999999999999999999999999864 2344577
Q ss_pred hhHHHHHHHHhhccccCCcccHHHHHhhhcccccccceEEEEec
Q psy852 798 NNRKLLEDINASGRLHMVPASFELQERKRKDDLAYKRSFFVRMV 841 (891)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (891)
.|++++++++.+|+..+.+... +.-++.||+
T Consensus 478 ln~~l~~~l~~~G~~~vs~t~~-------------~g~~~lR~~ 508 (539)
T PLN02590 478 RNRELLAAVNSTGKIFISHTAL-------------SGKFVLRFA 508 (539)
T ss_pred HHHHHHHHHHhCCCEEEEeeEE-------------CCEEEEEEE
Confidence 8899999999999998877653 234788885
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=268.93 Aligned_cols=290 Identities=28% Similarity=0.442 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHhhccCCcc----ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH
Q psy852 444 RHCELAKLFEGKVRRDPRF----EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 519 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~----eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv 519 (891)
-+.++.+++.+.+.--+.+ .--+-+|+|||++|++|+++||+++.++... .+ .++++||+|+++|||+
T Consensus 123 lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~------~~--~~~~vv~~S~~aH~Sv 194 (490)
T PLN02880 123 LEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK------NA--LEKLVVYASDQTHSAL 194 (490)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcc------cc--cCCeEEEEcCCchHHH
Confidence 3445566666666432221 1235588999999999999999987654221 11 3578999999999999
Q ss_pred HHHHHHcCc---eEEEecCCC--CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-------
Q psy852 520 EKAAMMAFV---RLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR------- 574 (891)
Q Consensus 520 ~Kaa~l~gv---~v~~Vp~d~--~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~------- 574 (891)
.|||+++|+ +++.||+|+ +++||+++|+++|++++++|.+|++|++|+|||. |++
T Consensus 195 ~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHV 274 (490)
T PLN02880 195 QKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHV 274 (490)
T ss_pred HHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEE
Confidence 999998877 489999975 6899999999999999999999999999999998 322
Q ss_pred ----------------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccc
Q psy852 575 ----------------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPL 638 (891)
Q Consensus 575 ----------------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~ 638 (891)
.++|+++||||++|+||||++|++||++++|++..+...+...+.|+.+..+... .+...
T Consensus 275 DaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~----~~~~~ 350 (490)
T PLN02880 275 DAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQAN----SVVDY 350 (490)
T ss_pred ehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCcccccc----CCCCh
Confidence 2577899999999999999999999999999887776777777778765322100 00000
Q ss_pred cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEE-eCCCceeEEEEEecCCcchhhhhhHHHHHHHH
Q psy852 639 SRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEI-SNDVRLGLVCFRLRSENNLIADQNNRKLLEDI 717 (891)
Q Consensus 639 SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~ei-l~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L 717 (891)
..+.+ .+.. | +.+ ++.-.|
T Consensus 351 ------------------------------------------~~~~i~~~rr------~----------~al--klw~~l 370 (490)
T PLN02880 351 ------------------------------------------KDWQIPLGRR------F----------RSL--KLWMVL 370 (490)
T ss_pred ------------------------------------------hccCcCCCCc------c----------cHH--HHHHHH
Confidence 00000 0000 0 001 111111
Q ss_pred HhCCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCcccccCCCcccceEEeeccc--chhhh
Q psy852 718 NASGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLIADHPLQLGLVCFRLRSE--NNVIA 795 (891)
Q Consensus 718 ~~~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~~~~~~~~gl~~~r~~~~--~~~~~ 795 (891)
+.- -.+-+.+.++..-++++.+.+.+++.+.|++..++.+++|||||.+. .+...
T Consensus 371 ~~~-----------------------G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~ 427 (490)
T PLN02880 371 RLY-----------------------GVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNG 427 (490)
T ss_pred HHh-----------------------CHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhH
Confidence 111 23455666665557777777888888889888888999999999763 23345
Q ss_pred hhhhHHHHHHHHhhccccCCcccHHHHHhhhcccccccceEEEEec
Q psy852 796 DQNNRKLLEDINASGRLHMVPASFELQERKRKDDLAYKRSFFVRMV 841 (891)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (891)
+..|++++++++.+|+....... .++.+++|++
T Consensus 428 ~~~n~~l~~~l~~~g~~~v~~t~-------------~~g~~~lR~~ 460 (490)
T PLN02880 428 NKLNHDLLDAVNSSGKIFISHTV-------------LSGKYVLRFA 460 (490)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEE-------------ECCEEEEEEE
Confidence 67788889999988887765433 2345788875
|
|
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=249.31 Aligned_cols=282 Identities=16% Similarity=0.176 Sum_probs=226.2
Q ss_pred HHHHHhcCC-CCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhH
Q psy852 36 DMLSDAIGC-IGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVI 114 (891)
Q Consensus 36 ~~l~~~~n~-~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~ 114 (891)
.+++..+|- |-...+..|..+++|.+++++++.||+-|++.. |-.|+||++
T Consensus 98 ~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~----------------------------g~~t~G~Se 149 (491)
T KOG1383|consen 98 KLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSC----------------------------GCGTVGGSE 149 (491)
T ss_pred hHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCcccc----------------------------Cccccccch
Confidence 344444444 555556899999999999999999999985522 223578886
Q ss_pred HHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC-CCCcccHHHHHHHHHhhhhcC
Q psy852 115 QSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMG 193 (891)
Q Consensus 115 ~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g 193 (891)
+ ....+...|.+.... .| ..++.+++++..|.++.|+++....+++.||+| .+.++|+...++.+++++
T Consensus 150 s-~l~~~k~~~~~r~~~----k~--I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNt--- 219 (491)
T KOG1383|consen 150 S-GLAAKKSYRNRRKAQ----KG--IDKPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENT--- 219 (491)
T ss_pred H-HHHHHHHHHHHHHhc----cC--CCCccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccce---
Confidence 5 333333333322110 01 234558888999999999999888899999999 789999999999999885
Q ss_pred CcceEEEeecccCccccccCHHHHHHHHHH-cCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcch
Q psy852 194 YIPFFVSTTLGTTSCCSFDNLAEIGPVAKE-FDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASE 272 (891)
Q Consensus 194 ~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~-~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~ 272 (891)
++|++.++++.+|.+||+++|.++.-+ |++++|||||.|||+... .++.
T Consensus 220 ---i~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~---------------------~~~~------ 269 (491)
T KOG1383|consen 220 ---IMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPA---------------------GYLN------ 269 (491)
T ss_pred ---EEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccc---------------------cccC------
Confidence 799999999999999999999999998 999999999999988510 0000
Q ss_pred hHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCcccc
Q psy852 273 CIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFR 352 (891)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 352 (891)
..++.
T Consensus 270 ---------------------------------------------------------------------------~~~fd 274 (491)
T KOG1383|consen 270 ---------------------------------------------------------------------------EEEFD 274 (491)
T ss_pred ---------------------------------------------------------------------------ccccc
Confidence 00111
Q ss_pred ccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChh-HHHHHHHHH
Q psy852 353 PFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR-SLKLWFVIR 431 (891)
Q Consensus 353 ~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~-~l~~w~~l~ 431 (891)
. +..++.|++.|+||++++|.++|.+++|++..+...+..++.|++.- +...|+.+||++. .++.|++|.
T Consensus 275 F---r~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~------y~s~TlngSR~g~~va~~wa~~~ 345 (491)
T KOG1383|consen 275 F---RVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGI------YASPTLNGSRPGSQVAAQWAALM 345 (491)
T ss_pred c---CCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCcc------ccCcccccCCcccHHHHHHHHHH
Confidence 1 23457899999999999999999999999998888888999999765 5578999999976 678999999
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCC
Q psy852 432 TYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR 469 (891)
Q Consensus 432 ~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~it 469 (891)
++|.+||.+..+++++.++.+.+.|+.+++|.+++++.
T Consensus 346 ~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~ 383 (491)
T KOG1383|consen 346 SLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPL 383 (491)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCc
Confidence 99999999999999999999999999999999998743
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=242.99 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=127.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc---CCCC--CccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAI---GCIG--FSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~---n~~~--~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~ 92 (891)
.|+++..++. .|..+.+.+...+ |.|. ..+..+..+++.+.++.+.+++++|.++ +.. +
T Consensus 24 vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eI--------v------ 88 (405)
T COG0520 24 VYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEI--------V------ 88 (405)
T ss_pred EEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeE--------E------
Confidence 5888877766 4544445555432 3333 3556677788999999999999999985 321 2
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH-H---cCCeEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-M---AFVRLKI 168 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~---~~~~v~~ 168 (891)
||.|.|..-|.....+.+..+ +...|++|..+|+|..-+.. + .|.+++.
T Consensus 89 ---------------ft~~tT~aln~va~~l~~~~~------------~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~ 141 (405)
T COG0520 89 ---------------FTRGTTEALNLVARGLGRSLK------------PGDEIVVSDLEHHSNIVPWQELAKRTGAKVRV 141 (405)
T ss_pred ---------------EeCChhHHHHHHHHHhhhhhc------------CCCEEEEccCcchhhHHHHHHHHHhcCcEEEE
Confidence 344555444444444443211 22349999999999987773 3 4779999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
||++++|.+|++++++.+.+.+ .+|++|+.+|.+|.+.|+++|+++|+++|+++-||||+
T Consensus 142 i~~~~~g~~~~~~~~~~i~~~T------klvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 142 IPLDDDGLLDLDALEKLITPKT------KLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred EecCCCCCcCHHHHHHhcCCCc------eEEEEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 9999999999999999777764 59999999999999999999999999999999999998
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-22 Score=248.46 Aligned_cols=242 Identities=14% Similarity=0.097 Sum_probs=167.8
Q ss_pred ceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------h
Q psy852 506 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------C 572 (891)
Q Consensus 506 ~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c 572 (891)
+.+|++|..+|.|+.+++.+.|++++.||+|.+|.+|+++|+++|+++. ..+..|+.+.++|. |
T Consensus 590 r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~---~~la~V~it~pst~G~~e~~I~eI~~i~ 666 (954)
T PRK05367 590 RDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHA---DNLAAIMITYPSTHGVFEETIREICEIV 666 (954)
T ss_pred CCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccC---CCeEEEEEEcCCCCeeecCCHHHHHHHH
Confidence 3579999999999999999999999999999999999999999998641 23555555555554 2
Q ss_pred hh-----hhcCC-------------CCccEEEEcCcccCCcccccE-----EEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 573 YR-----KSQGI-------------EYADSFNVNVNKWLLTAFDSS-----CLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 573 ~~-----~ldGi-------------~~aDSIs~d~HK~L~~P~g~G-----~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
++ ++||. .+||++++|+|||+++|.|+| .+++|+. +.+.+.... .... .
T Consensus 667 h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~--l~p~lpg~~---v~~~---~ 738 (954)
T PRK05367 667 HEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH--LAPFLPGHP---VQIA---G 738 (954)
T ss_pred HHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc--ccccCCCCc---cCcC---C
Confidence 32 34442 458999999999999999855 9999853 333222111 0000 0
Q ss_pred cccCCcccccccc----cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEe--CC--CceeEEEEEecCC
Q psy852 630 DYRHWGIPLSRRF----RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS--ND--VRLGLVCFRLRSE 701 (891)
Q Consensus 630 ~~~~~ti~~SRr~----~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil--~~--~~~~iV~Fr~~~~ 701 (891)
+....+...+.++ .+++.|+.++.+|.+|+++..+.++.+|+|+.++|++. +++. ++ +..+=++|++.+.
T Consensus 739 ~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~i~~~~~~ 816 (954)
T PRK05367 739 GETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH--YPVLYTGANGRVAHECILDLRPL 816 (954)
T ss_pred CCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh--cCccccCCCCCcccceEEEeecc
Confidence 0001122222333 34679999999999999999999999999999999874 4442 22 2233344554322
Q ss_pred cchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 702 NNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 702 ~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
. ...+..+..+.++|.+.|+...+-+ ......+ +++...++++|||+++++++++....
T Consensus 817 ~-~~~g~~~~di~krL~d~G~~~~t~~-~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~ 876 (954)
T PRK05367 817 K-ESTGITVDDIAKRLIDYGFHAPTMS-FPVAGTLMVEPTESESKAELDRFCDAMIAIRAEI 876 (954)
T ss_pred c-ccCCCCHHHHHHHHHHCCCeEeecC-CccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHH
Confidence 1 1112356789999999998755422 2224456 88998999999999999999887533
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=250.48 Aligned_cols=260 Identities=17% Similarity=0.177 Sum_probs=181.5
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHhhhccCcccccccc-------ccceEEEecccchHHHHHHHHHcCc---eEEEec
Q psy852 465 SNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVL-------LSKLMAYCSKEAHSCVEKAAMMAFV---RLKILE 534 (891)
Q Consensus 465 v~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~-------~~~~vI~~S~~aH~Sv~Kaa~l~gv---~v~~Vp 534 (891)
.|-+++|||+||++|+++||++..+.........++|+. .++++||+|+.+|+|+.|+++++|+ +++.||
T Consensus 161 ~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp 240 (522)
T TIGR03799 161 LGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIK 240 (522)
T ss_pred CeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEE
Confidence 456899999999999999999876543211223334442 3578999999999999999998776 799999
Q ss_pred CCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----------------------hhcC
Q psy852 535 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----------------------KSQG 578 (891)
Q Consensus 535 ~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----------------------~ldG 578 (891)
+|++|+||+++|+++|+++.+++..|++|++++|||. |++ .++|
T Consensus 241 ~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~g 320 (522)
T TIGR03799 241 TDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKG 320 (522)
T ss_pred eCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcC
Confidence 9999999999999999999888989999999999885 322 2567
Q ss_pred CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 579 IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 579 i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
+++||||++|+|||+++|+|||++++|++..+ +.+...+.|+ . . .++.
T Consensus 321 le~aDSit~d~HK~l~~P~g~G~llvr~~~~~-~~~~~~~~Yl-----~----~----~~~~------------------ 368 (522)
T TIGR03799 321 IERADSVTIDAHKQLYVPMGAGMVLFKDPALM-SAIEHHAEYI-----L----R----KGSK------------------ 368 (522)
T ss_pred chhCCEEEEChhhcCCcCcccEEEEEeCHHHH-HHhccCcchh-----c----C----CCCC------------------
Confidence 78999999999999999999999999998543 3333333331 0 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEEEE
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEVFE 738 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~s 738 (891)
+..-..|.... +...-.+...|..
T Consensus 369 -------------------------------d~~~~~legsR------~~~al~lw~aL~~------------------- 392 (522)
T TIGR03799 369 -------------------------------DLGSHTLEGSR------PGMAMLVYAGLHI------------------- 392 (522)
T ss_pred -------------------------------ccccceeecCc------chHHHHHHHHHHH-------------------
Confidence 00000111100 0011112222221
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCcccccCCCcccceEEeecccc----------------hhhhhhhhHHH
Q psy852 739 LQERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLIADHPLQLGLVCFRLRSEN----------------NVIADQNNRKL 802 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~~~~~~~~gl~~~r~~~~~----------------~~~~~~~~~~~ 802 (891)
...+-++.+++...++++.+.+.+++.+.|++..++.++||||||.++. ++..+..|+++
T Consensus 393 ----lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i 468 (522)
T TIGR03799 393 ----IGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFI 468 (522)
T ss_pred ----HhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHH
Confidence 1345677888888888888999999999999888889999999997642 12234455566
Q ss_pred HHHHHhhccccCCc
Q psy852 803 LEDINASGRLHMVP 816 (891)
Q Consensus 803 ~~~~~~~~~~~~~~ 816 (891)
.++++.+|+.....
T Consensus 469 ~~~~~~~G~~~vs~ 482 (522)
T TIGR03799 469 QKRQREAGKSFVSR 482 (522)
T ss_pred HHHHHhcCCEEEEE
Confidence 66666666555443
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=227.79 Aligned_cols=172 Identities=22% Similarity=0.221 Sum_probs=126.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIED 98 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~ 98 (891)
||++.+.+. ..|.++..+...... +.......|...+++.++.+++++++|.+... ++
T Consensus 23 ~~~~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~--------~~------------ 80 (371)
T PRK13520 23 RILSSMCTE-PHPIARKAHEMFLET-NLGDPGLFPGTAKLEEEAVEMLGELLHLPDAY--------GY------------ 80 (371)
T ss_pred HeeeeeecC-chHHHHHHHHHHHhc-CCCCcccCccHHHHHHHHHHHHHHHhCCCCCC--------eE------------
Confidence 578887665 455555444443322 22222223667888999999999999987542 12
Q ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCccc
Q psy852 99 YMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 178 (891)
Q Consensus 99 ~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id 178 (891)
+++||+.. +...+..++.... .++..|+++..+|+|+.+++...|.+++.||++++|.+|
T Consensus 81 ---------~~~ggt~a-~~~a~~~~~~~~~----------~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d 140 (371)
T PRK13520 81 ---------ITSGGTEA-NIQAVRAARNLAK----------AEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD 140 (371)
T ss_pred ---------EecCcHHH-HHHHHHHHHhhcc----------CCCceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCC
Confidence 34567644 4444444444210 012358899999999999987777899999999999999
Q ss_pred HHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 179 ~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++|+++|+++ +.+|+++.++|.+|.++|+++|+++|+++|+++|||+||+|+.
T Consensus 141 ~~~l~~~i~~~------~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~ 194 (371)
T PRK13520 141 VKAVEDLIDDN------TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFV 194 (371)
T ss_pred HHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHH
Confidence 99999999765 3567788899999999999999999999999999999997654
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=219.92 Aligned_cols=186 Identities=17% Similarity=0.182 Sum_probs=131.6
Q ss_pred HhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q psy852 7 FLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNA 86 (891)
Q Consensus 7 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~ 86 (891)
.+..+.++.+++|++.++.+.+..+ +...+..... .+.......|....++.++.+++++++|.++.. ++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~--------~~ 80 (373)
T TIGR03812 11 EYRSEDLKYSDGRILGSMCTNPHPI-AVKAYDMFIE-TNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAY--------GY 80 (373)
T ss_pred HHHhcCCCCCCCcEEEEEeCCchHH-HHHHHHHHhh-cCCCCcccCccHHHHHHHHHHHHHHHhCCCCCC--------eE
Confidence 3566788889999999998765444 3333333322 221122234667889999999999999997542 11
Q ss_pred CCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeE
Q psy852 87 TTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 166 (891)
Q Consensus 87 ~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v 166 (891)
.+.||+.. +...+...+...... .+...|+++..+|+++.+++...|.++
T Consensus 81 ---------------------~~~g~~~~-~~~~~~~~~~~~~~~--------~~g~~vl~~~~~h~~~~~~~~~~G~~~ 130 (373)
T TIGR03812 81 ---------------------IVSGGTEA-NIQAVRAAKNLAREE--------KRTPNIIVPESAHFSFEKAAEMLGLEL 130 (373)
T ss_pred ---------------------EeccHHHH-HHHHHHHHHHHHhcc--------CCCcEEEECCcchHHHHHHHHHcCCeE
Confidence 23466543 333332223210000 012358889999999999998778899
Q ss_pred EEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 167 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 167 ~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+.++++.++.+|+++|++.+++++ ..++.+.++|.+|.++|+++|.++|+++|+|+|||+|||++.
T Consensus 131 ~~v~~~~~~~~d~~~l~~~l~~~~------~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~ 196 (373)
T TIGR03812 131 RYAPLDEDYTVDVKDVEDLIDDNT------IGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFV 196 (373)
T ss_pred EEEeeCCCCCcCHHHHHHHHhhCc------EEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHH
Confidence 999999999999999999997653 345555589999999999999999999999999999997643
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-21 Score=234.61 Aligned_cols=164 Identities=19% Similarity=0.168 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhcCCCCCccccChh-----HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPS-----CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPAN 104 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~-----~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~ 104 (891)
....+.+++....+.....+...|. ..+++.+.-.|||++.|+|...+
T Consensus 498 k~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~~Sl--------------------------- 550 (939)
T TIGR00461 498 KLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGFDAISL--------------------------- 550 (939)
T ss_pred ccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCccc---------------------------
Confidence 3445667776667666656666676 88999999999999999995321
Q ss_pred CCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHH
Q psy852 105 QPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQ 184 (891)
Q Consensus 105 ~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~ 184 (891)
..++|+ +++++.+..+|..... .|. ..+.+|++|..+|.++.+++.+.|.+++.|++|++|.+|+++|++
T Consensus 551 ---~p~aGA-~gE~agL~aiR~y~~~-----rge-~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~ 620 (939)
T TIGR00461 551 ---QPNSGA-QGEYAGLRVIRSYHES-----RGE-NHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKN 620 (939)
T ss_pred ---CCchHH-HHHHHHHHHHHHHHHh-----cCC-CCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHH
Confidence 124554 4566666566654210 111 246779999999999999998888899999999999999999999
Q ss_pred HHHhhhhcCCcceEEEeecccCccccccC-HHHHHHHHHHcCCceeeeccc
Q psy852 185 VMQQDETMGYIPFFVSTTLGTTSCCSFDN-LAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 185 ~l~~~~~~g~~p~~V~~t~Gtt~~GavDp-l~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+++ .|..+.+|++|.+|| +|.++| |++|+++|+++|.++|||||+
T Consensus 621 ~i~~---~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq 667 (939)
T TIGR00461 621 KAEQ---HGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGAN 667 (939)
T ss_pred HHhh---cCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecC
Confidence 9985 233478999999999 799988 999999999998888888888
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=216.87 Aligned_cols=289 Identities=13% Similarity=0.119 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH
Q psy852 443 RRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA 522 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka 522 (891)
+..-+.-++.+.++++.++ ..+..|+|+||+.+.+-.+.|++.... +...+|.|+++...|.+++|+
T Consensus 120 ~~e~~~Vnm~~~L~~~~~~--~~g~~t~G~Ses~l~~~k~~~~~r~~~-----------k~I~~p~iv~~~~v~~a~eK~ 186 (491)
T KOG1383|consen 120 KLEAECVNMIANLFNAPSD--SCGCGTVGGSESGLAAKKSYRNRRKAQ-----------KGIDKPNIVTPQNVHAAFEKA 186 (491)
T ss_pred HHHHHHHHHHHHHhcCCcc--ccCccccccchHHHHHHHHHHHHHHhc-----------cCCCCccccchHHHHHHHHHH
Confidence 3344555667777776554 677889999999555555555544332 224688999999999999999
Q ss_pred HHHcCceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccch------h-------h------hhc-----
Q psy852 523 AMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC------Y-------R------KSQ----- 577 (891)
Q Consensus 523 a~l~gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c------~-------~------~ld----- 577 (891)
++++.++++.||.| .+++||+..+.++++++ ...|++.+|++.. . + |+|
T Consensus 187 a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eN------ti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~Gg 260 (491)
T KOG1383|consen 187 ARYFEVELREVPLDEGDYRVDPGKVVRMIDEN------TIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGG 260 (491)
T ss_pred HhhEEEEEEeeeccccceEecHHHHHHHhccc------eEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCcc
Confidence 99999999999998 78999999999999986 4567777766651 0 0 222
Q ss_pred ---------------CCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-
Q psy852 578 ---------------GIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR- 641 (891)
Q Consensus 578 ---------------Gi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr- 641 (891)
+.+++.|||.|+||++++|.|.|++++|+++.+...+....+|+.. .+..+|+++||+
T Consensus 261 Fi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg------~y~s~TlngSR~g 334 (491)
T KOG1383|consen 261 FINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGG------IYASPTLNGSRPG 334 (491)
T ss_pred ccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCc------cccCcccccCCcc
Confidence 3578999999999999999999999999999999989999999765 356889999997
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhH-HHHHHHHHhC
Q psy852 642 FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNN-RKLLEDINAS 720 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln-~~L~~~L~~~ 720 (891)
+..+.+|++|..+|.+||.+..+++.+.+++|.+.|+++++|.++++|...++.|.-.. .+ -++.+.|.++
T Consensus 335 ~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~--------~~i~elsd~l~~~ 406 (491)
T KOG1383|consen 335 SQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSND--------VNIFELSDLLRKK 406 (491)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCc--------cchhhhhHHHHhc
Confidence 77889999999999999999999999999999999999999999999777666666432 33 3788888999
Q ss_pred CcEEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHHHHHHhhhccCc
Q psy852 721 GRLHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLGLVCFRLRSENN 771 (891)
Q Consensus 721 G~~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~~~~~~l~~~~~ 771 (891)
|..+-. +.-...+ +++ ..++.++-.|+++.+|++++ +.|.+.+.
T Consensus 407 GW~lna---lq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~----~el~~~p~ 452 (491)
T KOG1383|consen 407 GWILNA---LQFPAAIHICVTRVHAREDVADRFVADIRKVV----EELKSLPE 452 (491)
T ss_pred CcCccc---cCCCCceEEEEEeeeccHHHHHHHHHHHHHHH----HHHHhCCC
Confidence 987422 2222345 554 44666666899999999887 44444443
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-17 Score=205.67 Aligned_cols=244 Identities=13% Similarity=0.037 Sum_probs=162.4
Q ss_pred eEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hh
Q psy852 507 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CY 573 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~ 573 (891)
-+|++|..+|.++.+.+.+.|++++.||+|++|.+|+++|+++|++.+. ...+|+.+.+++. |+
T Consensus 617 ~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~---~ta~V~vt~pSn~gg~e~~I~eI~~iah 693 (993)
T PLN02414 617 NVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKD---NLAALMVTYPSTHGVYEEGIDEICDIIH 693 (993)
T ss_pred CEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCC---CeEEEEEECCCccccccchHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999986321 1233433333332 22
Q ss_pred h-----hhcCC-------------CCccEEEEcCcccCCcccc-----cEEEEEeCCccchhhhccCCCccccCCCCCcc
Q psy852 574 R-----KSQGI-------------EYADSFNVNVNKWLLTAFD-----SSCLWVADRYKLTSALVVDPLYLQHGHEGAID 630 (891)
Q Consensus 574 ~-----~ldGi-------------~~aDSIs~d~HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~ 630 (891)
+ .+||. -++|.+.+++|||+++|.| +|.+++|.. +.+.+ +.+.-..+.....
T Consensus 694 ~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~--L~p~l---Pg~~v~~~~~~~~ 768 (993)
T PLN02414 694 DNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFL---PSHPVVPTGGIPR 768 (993)
T ss_pred HcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchh--hcccC---CCCccccCCCccc
Confidence 2 23432 3589999999999999987 999999874 33222 1111000000000
Q ss_pred ccCCccccccc-------ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--Cce--eEEEEEec
Q psy852 631 YRHWGIPLSRR-------FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND--VRL--GLVCFRLR 699 (891)
Q Consensus 631 ~~~~ti~~SRr-------~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~--~iV~Fr~~ 699 (891)
.......|+++ .-++..|..++.+|.+|+++..++++.+|+|+.++|++..++...++ +.. .++.++
T Consensus 769 r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~-- 846 (993)
T PLN02414 769 PEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLR-- 846 (993)
T ss_pred ccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEecc--
Confidence 00111123332 12357799999999999999999999999999999987443433333 212 234443
Q ss_pred CCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 700 SENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 700 ~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
+. +.+.......+.++|.+.|+...+-+ ......+ ++++.+.+++|||+++++++++....
T Consensus 847 ~l-~~~~g~~~~di~krL~d~Gihapt~~-~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~ 908 (993)
T PLN02414 847 PF-KNTAGIEPEDVAKRLMDYGFHAPTMS-WPVPGTLMIEPTESESKAELDRFCDALISIREEI 908 (993)
T ss_pred cc-ccccCCCHHHHHHHHHHcCcEEeeec-cccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 11 00001234678899998888643322 2345566 99999999999999999999887533
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=196.22 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=123.4
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCCCCC---ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGCIGF---SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNI 96 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~---~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~ 96 (891)
|++|-.+++..+.++..+.....+..+. .+..++.+..+..++.+++++++|.+.+..
T Consensus 2 yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i------------------- 62 (379)
T TIGR03402 2 YLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEI------------------- 62 (379)
T ss_pred cCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeE-------------------
Confidence 7888888888888877766554322222 233456677888899999999999864421
Q ss_pred cccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecCC
Q psy852 97 EDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPDD 173 (891)
Q Consensus 97 ~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d~ 173 (891)
.+++|||...++.+..+..... ++..|+++..+|+|+...+. ..|.+++.|++++
T Consensus 63 ----------~~t~~~t~a~~~al~~~~~~~~------------~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~ 120 (379)
T TIGR03402 63 ----------IFTSGGTESDNTAIKSALAAQP------------EKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE 120 (379)
T ss_pred ----------EEeCcHHHHHHHHHHHHHHhcC------------CCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC
Confidence 1355776543433333221110 12358888999999877653 2578999999999
Q ss_pred CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 174 KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 174 ~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+|.+|+++|++.+++. +.+|+++..+|.+|.+.|+++|+++|+++|+++|+|+++
T Consensus 121 ~g~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~ 175 (379)
T TIGR03402 121 EGRLDLEELRAAITDD------TALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQ 175 (379)
T ss_pred CCcCCHHHHHHhcCCC------cEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcc
Confidence 9999999999998654 468889999999999999999999999999999999988
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-18 Score=195.51 Aligned_cols=170 Identities=14% Similarity=-0.005 Sum_probs=121.8
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc----CCCCCccccChhHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCCCCCCCCcc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAI----GCIGFSWAASPSCTELETIVLDWLGKAIGLP-EKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~~~~~~~~~g~~tp~~~~ 93 (891)
.|++|-.+++....++..+..... |+....+..++.+.++-..+.+.+++++|.+ +...
T Consensus 25 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v---------------- 88 (406)
T PRK09295 25 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEEL---------------- 88 (406)
T ss_pred EEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeE----------------
Confidence 799999888887888766655442 3323345556777777778999999999973 3211
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH----HHcCCeEEEE
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVRLKIL 169 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa----~~~~~~v~~V 169 (891)
.+++|+|...+..+..+.... ..+...|+++..+|+|..... ...+.+++.|
T Consensus 89 -------------~~t~g~t~~l~~~~~~~~~~~-----------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v 144 (406)
T PRK09295 89 -------------VFVRGTTEGINLVANSWGNSN-----------VRAGDNIIISEMEHHANIVPWQMLCARVGAELRVI 144 (406)
T ss_pred -------------EEeCCHHHHHHHHHHHhhhhc-----------CCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEE
Confidence 134555543232222221111 012234888899998864433 3467899999
Q ss_pred ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 170 EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 170 ~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+++++|.+|+++|++.+.++ +.+|+++..+|.+|.+.|+++|+++|+++|+++++|+|+
T Consensus 145 ~~~~~~~~d~~~l~~~i~~~------t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~ 203 (406)
T PRK09295 145 PLNPDGTLQLETLPALFDER------TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQ 203 (406)
T ss_pred ecCCCCCCCHHHHHHhcCCC------cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEccc
Confidence 99999999999999988654 458999999999999999999999999999999999988
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-19 Score=216.62 Aligned_cols=279 Identities=16% Similarity=0.119 Sum_probs=189.3
Q ss_pred CccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChh-----HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy852 17 HPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPS-----CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND 91 (891)
Q Consensus 17 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~-----~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~ 91 (891)
+..++|+ .+....|.+. +.....+.....+-..|. ..+++.+...||++++|++...+ +
T Consensus 500 ~~i~lGs-ct~~~~p~~~--~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d~~sl----------~--- 563 (954)
T PRK05367 500 SMIPLGS-CTMKLNAAAE--MIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYDAVSL----------Q--- 563 (954)
T ss_pred ceeeCCc-CCCcCCHHHH--HHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCCCEEE----------C---
Confidence 3445666 3433444333 333333333333444553 78999999999999999985321 0
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP 171 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~ 171 (891)
.+|| .+++++.+..+|.... .+ |. ..+.+|++|+.+|+|+.+++.+.|.+++.|++
T Consensus 564 -----------------~~~g-a~ge~agL~a~r~~~~-~~----G~-~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~ 619 (954)
T PRK05367 564 -----------------PNAG-AQGEYAGLLAIRAYHE-SR----GE-GHRDVCLIPSSAHGTNPASAVMAGMKVVVVAC 619 (954)
T ss_pred -----------------ccHH-HHHHHHHHHHHHHHhh-cc----CC-CCCCEEEEEchhhhhhHHHHHHCCCEEEEECC
Confidence 1234 3566555555564311 00 11 13567999999999999999888889999999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCC
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~ 251 (891)
|.+|.+|+++|++++++.. ..++.|++|.+||..+..|||.+|+++|+++|+++|||||+++.+..
T Consensus 620 d~~G~iD~~~L~~~i~~~~---~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~----------- 685 (954)
T PRK05367 620 DENGNIDLDDLRAKAEEHA---DNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVG----------- 685 (954)
T ss_pred CCCCCcCHHHHHHHHhccC---CCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccC-----------
Confidence 9999999999999997641 23788999999998444599999999999999888888888432210
Q ss_pred cccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccccccc
Q psy852 252 TSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIF 331 (891)
Q Consensus 252 ~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (891)
T Consensus 686 -------------------------------------------------------------------------------- 685 (954)
T PRK05367 686 -------------------------------------------------------------------------------- 685 (954)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCce-----EEEEeccccchhhcccCccccCCCCCC
Q psy852 332 DVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSS-----CLWVADRYKLTSALVVDPLYLQHGHEG 406 (891)
Q Consensus 332 ~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g-----~~~~r~~~~~~~~~~~~~~y~~~~~~~ 406 (891)
+++ .+-..||.+.+|+|||+++|+++| .+.+|+. +. +|+.....+
T Consensus 686 ---------------l~~------pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~--l~-------p~lpg~~v~ 735 (954)
T PRK05367 686 ---------------LAR------PGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH--LA-------PFLPGHPVQ 735 (954)
T ss_pred ---------------CCC------hhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc--cc-------ccCCCCccC
Confidence 000 011247999999999999999866 8998852 32 222221100
Q ss_pred -cccccccccCCCCCh----hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccC
Q psy852 407 -AIDYRHWGIPLSRRF----RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD 459 (891)
Q Consensus 407 -~~~~~~~~~~~sr~~----~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~ 459 (891)
..+....+...+.++ .+++.|+.++.+|.+|++++++.++.+|+|++++|.+.
T Consensus 736 ~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~ 793 (954)
T PRK05367 736 IAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH 793 (954)
T ss_pred cCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000011122233333 35679999999999999999999999999999999764
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=203.55 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=121.2
Q ss_pred HHHHHHHHhhccCCc-cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 447 ELAKLFEGKVRRDPR-FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~-~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
+..+++++.|...+. =++++.+||||||||++|++++|.++..+.+. +|....+++||+|+.+|+|+.|++++
T Consensus 84 ~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~------~g~~~~~~~ii~s~~~H~sv~ka~~~ 157 (431)
T TIGR01788 84 RCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEA------AGKPTDKPNLVMGSNVQVCWEKFARY 157 (431)
T ss_pred HHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCcEEEEcCcchHHHHHHHHH
Confidence 334467777765311 25777789999999999999999765433211 12222467999999999999999999
Q ss_pred cCceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----------hhcC--
Q psy852 526 AFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----------KSQG-- 578 (891)
Q Consensus 526 ~gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----------~ldG-- 578 (891)
++++++.||+|++ |+||+++|+++|+++ +++|++++|+|. |++ |+|+
T Consensus 158 lg~~v~~i~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq 231 (431)
T TIGR01788 158 FDVELREVPMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAAS 231 (431)
T ss_pred cCceeEEEecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEeccc
Confidence 9999999999986 599999999999875 568888888876 322 2333
Q ss_pred -----------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccC
Q psy852 579 -----------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD 617 (891)
Q Consensus 579 -----------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~ 617 (891)
+++|||+++|+|||+++|+|||++++|++..+.+.+...
T Consensus 232 ~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~ 287 (431)
T TIGR01788 232 GGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFH 287 (431)
T ss_pred HHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheec
Confidence 467899999999999999999999999885554444333
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=198.77 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=144.0
Q ss_pred CCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccc--cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q psy852 13 THWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWA--ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPN 90 (891)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~--~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~ 90 (891)
.|-..|-|+++-.+++..|.++..|+....+-.+..+. .+..+...-..+.+.+|+|+|-++...
T Consensus 39 ~~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dI------------- 105 (428)
T KOG1549|consen 39 HHGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDI------------- 105 (428)
T ss_pred cCCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcE-------------
Confidence 34457889999999999999999888876543333332 344444434568999999999987632
Q ss_pred CccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH-H--cCCeEE
Q psy852 91 DIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-M--AFVRLK 167 (891)
Q Consensus 91 ~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~--~~~~v~ 167 (891)
.||+|+|+++|+.+..++|....+. +-.|++.+.+|.|+.++++ + .+..++
T Consensus 106 ----------------iFts~ATEs~Nlvl~~v~~~~~~~~----------~k~iitl~~eH~~v~~s~~~l~~~g~~Vt 159 (428)
T KOG1549|consen 106 ----------------VFTSGATESNNLVLKGVARFFGDKT----------KKHIITLQTEHPCVLDSCRALQEEGLEVT 159 (428)
T ss_pred ----------------EEeCCchHHHHHHHHHhhccccccc----------cceEEEecccCcchhHHHHHHHhcCeEEE
Confidence 3689999999998888887653211 1159999999999999994 3 467999
Q ss_pred EEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 168 ILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 168 ~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+||++.+|..|++.|++.|+.++ -+|++.+.|++.|.++||+||+++|+++++.+|+|||+
T Consensus 160 ~lpv~~~~~~d~~~~~~~i~~~T------~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQ 220 (428)
T KOG1549|consen 160 YLPVEDSGLVDISKLREAIRSKT------RLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220 (428)
T ss_pred EeccCccccccHHHHHHhcCCCc------eEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhh
Confidence 99999999999999999999975 59999999999999999999999999999999999999
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=195.70 Aligned_cols=277 Identities=16% Similarity=0.107 Sum_probs=195.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCCCCC----ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGCIGF----SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~----~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
|++|-.+++..+.++..+.....+..+. .+..++.+.++..++.+.+++++|.++...
T Consensus 2 Yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v------------------ 63 (364)
T PLN02651 2 YLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEI------------------ 63 (364)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeE------------------
Confidence 7888878888888887776655432222 333456677888889999999999875421
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d 172 (891)
.+++|||...++.+..+.+... .++..|+++..+|+|+...+. ..+.+++.|+++
T Consensus 64 -----------~~t~~~t~a~~~~l~~~~~~~~-----------~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~ 121 (364)
T PLN02651 64 -----------IFTSGATESNNLAIKGVMHFYK-----------DKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK 121 (364)
T ss_pred -----------EEeCCHHHHHHHHHHHHHHhcc-----------CCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccC
Confidence 1456776554544443322211 012358889999999877763 246789999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKT 252 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~ 252 (891)
++|.+|+++|++.|+++ +.+|+++..+|.+|.++|+++|+++|+++|+++|||+|++....
T Consensus 122 ~~~~~d~~~l~~~i~~~------t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~------------- 182 (364)
T PLN02651 122 SDGLVDLDELAAAIRPD------TALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI------------- 182 (364)
T ss_pred CCCcCCHHHHHHhcCCC------cEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCc-------------
Confidence 99999999999999764 35899999999999999999999999999999999998842110
Q ss_pred ccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccc
Q psy852 253 SFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFD 332 (891)
Q Consensus 253 ~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (891)
T Consensus 183 -------------------------------------------------------------------------------- 182 (364)
T PLN02651 183 -------------------------------------------------------------------------------- 182 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccc
Q psy852 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 412 (891)
Q Consensus 333 ~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 412 (891)
. + + ++.+ .+|.+++++||| ++|.++|++++|++... ...|.+.....+. .
T Consensus 183 -~------------~--~----~~~~-~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~----~l~p~~~g~~~~~-----~ 232 (364)
T PLN02651 183 -P------------V--D----VDDL-GVDLMSISGHKI-YGPKGVGALYVRRRPRV----RLEPLMSGGGQER-----G 232 (364)
T ss_pred -c------------c--C----cccC-CCCEEEechhhh-CCCCceEEEEEcCCCCC----CCCccccCCCccC-----C
Confidence 0 0 0 0111 369999999998 79999999999975321 1223332211110 0
Q ss_pred cccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhcc-CCccccccC
Q psy852 413 WGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISND 467 (891)
Q Consensus 413 ~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~-~~~~eVv~~ 467 (891)
+ -.|+.... .+++-.+++.+-. +..++.++..++++++.+.|.+ .++++++++
T Consensus 233 ~-~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~ 287 (364)
T PLN02651 233 R-RSGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGP 287 (364)
T ss_pred c-cCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence 1 13444443 4677788888765 4588899999999999999985 689999975
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-17 Score=188.79 Aligned_cols=171 Identities=12% Similarity=-0.019 Sum_probs=121.1
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCC----CCccccChhHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCCCCCCCCc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAIGCI----GFSWAASPSCTELETIVLDWLGKAIGLP-EKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~n~~----~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~~~~~~~~~g~~tp~~~ 92 (891)
..|++|-..++....++..+....-+.. ...+..+....+.-..+.+.+++++|.+ ++..
T Consensus 20 ~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i--------------- 84 (401)
T PRK10874 20 GVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNI--------------- 84 (401)
T ss_pred eEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEE---------------
Confidence 4699999888877777776655443222 2233345666778888999999999983 3211
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHH----HHHHHcCCeEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----KAAMMAFVRLKI 168 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~----kaa~~~~~~v~~ 168 (891)
.+++|+|..-++....+.... . .+.-.|+++..+|+|.. +.+...|.+++.
T Consensus 85 --------------~~~~~~t~~i~~~~~~~~~~~---~--------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~ 139 (401)
T PRK10874 85 --------------VWTRGTTESINLVAQSYARPR---L--------QPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVK 139 (401)
T ss_pred --------------EEECCHHHHHHHHHHHhhhcc---C--------CCcCEEEECCcchHHHHHHHHHHHHHhCCEEEE
Confidence 134455433232222222110 0 12234888899998853 333456789999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
|+++.+|.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|+++|+++|+++++|+|+
T Consensus 140 v~~~~~~~~d~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 140 LPLGADRLPDVDLLPELITPR------TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred EecCCCCcCCHHHHHHhcCcC------cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 999999999999999998654 358889999999999999999999999999999999988
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-17 Score=186.97 Aligned_cols=170 Identities=15% Similarity=0.030 Sum_probs=118.8
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc----CCCCCccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCcc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAI----GCIGFSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~~ 93 (891)
.|+++-..+..+..++..+..... |+....+..++...+.-.++.+.+++++|.+. +. .
T Consensus 20 ~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~--------v-------- 83 (403)
T TIGR01979 20 VYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEE--------I-------- 83 (403)
T ss_pred EEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCe--------E--------
Confidence 588888777666666555443322 33333344456666677788899999999873 21 1
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHH----HHHHcCCeEEEE
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AAMMAFVRLKIL 169 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~k----aa~~~~~~v~~V 169 (891)
.+++|++..-+..+..+.+... .+...|+++..+|+|... .+...|.+++.|
T Consensus 84 -------------~~~~g~t~~l~~~~~~~~~~~~-----------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v 139 (403)
T TIGR01979 84 -------------VFTRGTTESINLVAYSWGDSNL-----------KAGDEIVISEMEHHANIVPWQLLAERTGATLKFI 139 (403)
T ss_pred -------------EEeCCHHHHHHHHHHHhhhhcC-----------CCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEE
Confidence 1344554322222222222110 122358888999998653 334567899999
Q ss_pred ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 170 EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 170 ~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+++++|.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|+++|+++|+++|+|+|+
T Consensus 140 ~~~~~~~~~~~~l~~~i~~~------~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 198 (403)
T TIGR01979 140 PLDDDGTLDLDDLEKLLTEK------TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQ 198 (403)
T ss_pred ecCCCCCCCHHHHHHHhccC------CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchh
Confidence 99999999999999998654 468899999999999999999999999999888888888
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=186.03 Aligned_cols=170 Identities=16% Similarity=0.083 Sum_probs=122.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHh--c--CCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDA--I--GCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~--~--n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
|++|-..+...+.++..+...+ . |+-...+..++....+..++.+++++++|.+... ..
T Consensus 2 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~v---------- 64 (373)
T cd06453 2 YLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPD-------EI---------- 64 (373)
T ss_pred cccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCC-------eE----------
Confidence 7777777777777777666553 1 2223355667778888889999999999987221 01
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH----HHHcCCeEEEEec
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEP 171 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~ 171 (891)
.+++|++..-+..+..+.+.. .+...|+++..+|++...+ +...+.+++.|++
T Consensus 65 -----------~~~~g~t~a~~~~~~~l~~~~------------~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 121 (373)
T cd06453 65 -----------IFTRNTTEAINLVAYGLGRAN------------KPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPV 121 (373)
T ss_pred -----------EEeCCHHHHHHHHHHHhhhcC------------CCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeec
Confidence 134566543333333333210 0122488889999997543 3345779999999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
|.+|.+|+++|++.+.++ +.+|+++..+|.+|.++|+++|.++|+++|++||+|+|++
T Consensus 122 ~~~~~~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~ 179 (373)
T cd06453 122 DDDGQLDLEALEKLLTER------TKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQS 179 (373)
T ss_pred CCCCCcCHHHHHHHhcCC------ceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhh
Confidence 999999999999999753 4588899999999999999999999999998888888873
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-17 Score=187.97 Aligned_cols=172 Identities=10% Similarity=-0.020 Sum_probs=121.1
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhc----CCCCCccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAI----GCIGFSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~ 92 (891)
..|++|-.+++....++..+..... |+....+..++...+.-..+.+.+++++|.+. +..
T Consensus 17 ~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i--------------- 81 (398)
T TIGR03392 17 TVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENI--------------- 81 (398)
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeE---------------
Confidence 3699998888777777666555432 22222344556667777889999999999852 211
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHH----HHHHcCCeEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AAMMAFVRLKI 168 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~k----aa~~~~~~v~~ 168 (891)
.+++|+|..-++....+.+.. . .+.-.|+++..+|+|... .+...|.+++.
T Consensus 82 --------------~~t~g~t~~l~~~~~~~~~~~---~--------~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~ 136 (398)
T TIGR03392 82 --------------VWTRGTTESINLVAQSYARPR---L--------QPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVK 136 (398)
T ss_pred --------------EEeCChHHHHHHHHHHhhhcc---C--------CCCCEEEECCcchhHHHHHHHHHHHHcCcEEEE
Confidence 134566543333332222110 0 112248888999988533 33456789999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
|+++.++.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|+++|+++|+++++|++++
T Consensus 137 v~~~~~~~~~~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~ 197 (398)
T TIGR03392 137 LPIGADLLPDIRQLPELLTPR------TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQG 197 (398)
T ss_pred EecCCCCCcCHHHHHHHhccC------ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhh
Confidence 999989999999999998654 3588889999999999999999999999999999999883
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-17 Score=182.90 Aligned_cols=172 Identities=15% Similarity=0.047 Sum_probs=115.2
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCC---CCCccccChhHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCCCCCCCCcccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGC---IGFSWAASPSCTELETIVLDWLGKAIGLP-EKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~---~~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
||+|-.+++..+.++..+.....+. ....+..+......-++.+..+.+.+|.. .+. +
T Consensus 2 yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~---------------i--- 63 (382)
T TIGR03403 2 YLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDD---------------I--- 63 (382)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCe---------------E---
Confidence 7888877777777766665544321 11222333334444555666667767652 221 1
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d 172 (891)
.+++|++...++....+.+.... . .++..|+++..+|+|+..++. ..|.+++.||++
T Consensus 64 -----------~~t~g~teal~~~~~~~~~~~~~-~--------~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~ 123 (382)
T TIGR03403 64 -----------IITSCATESNNWVLKGVYFDEIL-K--------GGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPIN 123 (382)
T ss_pred -----------EEeCCHHHHHHHHHHHHHHhhcc-c--------CCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecC
Confidence 14566654433322222211000 0 012348889999999988763 357899999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
++|.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|.++|+++|+++|+|+|++
T Consensus 124 ~~g~~d~~~l~~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~ 180 (382)
T TIGR03403 124 EQGTITAEQVREAITEK------TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQA 180 (382)
T ss_pred CCCCCCHHHHHHhcccC------CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhh
Confidence 99999999999988754 3588899999999999999999999999999889998873
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-18 Score=196.80 Aligned_cols=240 Identities=15% Similarity=0.164 Sum_probs=169.5
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.|+....++....+++++++|.+.... +..++|||-.++...+..+|.++
T Consensus 99 gss~~~~l~~~~e~~~~~~~G~~~~~~----------------------------a~~v~~~Tg~al~laL~alr~~~-- 148 (444)
T TIGR03531 99 GSSLLYKLTNKLVKDFLKLLGLRSIKS----------------------------AFVVPLATGMSLSLCLSALRHKR-- 148 (444)
T ss_pred CccHHHHHHHHHHHHHHHHcCCCCCCE----------------------------EEEECCHHHHHHHHHHHHcCCcC--
Confidence 456778999999999999999973210 01235665222222222233321
Q ss_pred CCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec---CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS 207 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~---d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~ 207 (891)
+ ..+.+|+ +..+|+|+.|++.+.|.+.+.|++ ++++.||+++|+++|++.. .+.+++|+.|.+|..
T Consensus 149 -~-------~gd~VI~-p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~--~kai~~Vv~Tp~t~~ 217 (444)
T TIGR03531 149 -P-------KAKYVIW-PRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIG--PDNILCVLSTTSCFA 217 (444)
T ss_pred -C-------CCCEEEE-ECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhcc--CCCEEEEEEcCCcCC
Confidence 0 1234454 456799999999988889999995 4668999999999998532 133566666777777
Q ss_pred cccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHh
Q psy852 208 CCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAIS 287 (891)
Q Consensus 208 ~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~ 287 (891)
.|..||+++|+++|++||+|+|+|+|||.....
T Consensus 218 ~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~----------------------------------------------- 250 (444)
T TIGR03531 218 PRSPDDIEEIAKICANYDIPHIVNNAYGLQSNK----------------------------------------------- 250 (444)
T ss_pred CcchhCHHHHHHHHHHcCCEEEEECcCcCcChh-----------------------------------------------
Confidence 789999999999999999999999999631110
Q ss_pred hhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccc-cCCC--cccEE
Q psy852 288 KLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFM-NGIE--YADSF 364 (891)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~gi~--~~ds~ 364 (891)
+.+++ ++++ .+|++
T Consensus 251 ---------------------------------------------------------------~~~~~~~g~~~Grad~v 267 (444)
T TIGR03531 251 ---------------------------------------------------------------YMELINKAIKVGRVDAV 267 (444)
T ss_pred ---------------------------------------------------------------hhhhhhccccccCCCeE
Confidence 00000 1111 37999
Q ss_pred EEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHH
Q psy852 365 NVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRR 444 (891)
Q Consensus 365 ~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~ 444 (891)
++|+||++.+|.++|+++++++..... +. ..|.... ....++++|+++..+|.+||++++++
T Consensus 268 v~s~hK~l~~pg~Gg~I~~~d~el~~~-i~--~~y~g~~---------------~~s~~~~~~~~ll~~G~~g~~~li~~ 329 (444)
T TIGR03531 268 VSSTDKNFMVPVGGAIIYSFDENFIQE-IS--KSYPGRA---------------SASPSLDVLITLLSLGSKGYLELLKE 329 (444)
T ss_pred EEeCccCCCCCCCEEEEEECCHHHHHH-HH--HhccCCC---------------CChHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999999999999988765432 22 1222100 11247889999999999999999999
Q ss_pred HHHHHHHHHHhhccC
Q psy852 445 HCELAKLFEGKVRRD 459 (891)
Q Consensus 445 ~lelAr~l~~~L~~~ 459 (891)
..++++++.+.|.+.
T Consensus 330 ~~~~a~~l~~~L~~l 344 (444)
T TIGR03531 330 RKEMYKYLKELLQKL 344 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999763
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=184.17 Aligned_cols=171 Identities=11% Similarity=-0.046 Sum_probs=118.6
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhc--CCC--CCccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAI--GCI--GFSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~--n~~--~~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~ 92 (891)
..|+++-.+++....++..+..... +.| ...+..++....+-.++.+.+++++|.++ ...
T Consensus 33 ~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v--------------- 97 (424)
T PLN02855 33 LVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREI--------------- 97 (424)
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEE---------------
Confidence 5799997777766777766555432 222 22333345555666788899999999853 211
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH----HHcCCeEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVRLKI 168 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa----~~~~~~v~~ 168 (891)
.+++|+|..-+..+..++... . .+...|+++..+|+|...+. ...|.+++.
T Consensus 98 --------------~~t~g~t~al~~i~~~~~~~~---~--------~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~ 152 (424)
T PLN02855 98 --------------VFTRNATEAINLVAYTWGLAN---L--------KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKF 152 (424)
T ss_pred --------------EEeCCHHHHHHHHHHHhhhhc---C--------CCcCEEEECCCccHHHHHHHHHHHHHcCCEEEE
Confidence 134566533222222221110 0 12234888889999875443 345789999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
|+++.++.+|+++|++.+.+. +-+|+++..+|.+|.+.|+++|+++|+++|+++++|+|+
T Consensus 153 v~~~~~~~~~~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~ 212 (424)
T PLN02855 153 VGLTPDEVLDVEQLKELLSEK------TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQ 212 (424)
T ss_pred EecCCCCCcCHHHHHHHhccC------ceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 999988899999999999653 458899999999999999999999999999999999988
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=181.92 Aligned_cols=278 Identities=17% Similarity=0.166 Sum_probs=187.7
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCCCC----ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAIGCIGF----SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~----~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
+.|++|-.+++..+.++..+...+.+..+. .+..+..+.+.-..+.+.+++++|.+++..
T Consensus 4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v---------------- 67 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREI---------------- 67 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeE----------------
Confidence 579999988888888877776654322221 222233345667778899999999865421
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEe
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILE 170 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~ 170 (891)
.+++|||...+..+..+.+... .++..|+++..+|+|+..++. ..+.+++.|+
T Consensus 68 -------------~~~~g~t~a~~~~l~~l~~~~~-----------~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~ 123 (402)
T TIGR02006 68 -------------VFTSGATESNNLAIKGIAHFYK-----------SKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLP 123 (402)
T ss_pred -------------EEeCCHHHHHHHHHHHHHHhhc-----------CCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEc
Confidence 2456776554443333322110 012358888999999988763 2478999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCC
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g 250 (891)
++++|.+|+++|++.+.+. +.+|+++..+|.+|.++|+++|.++|+++|+++|+|+|++.....
T Consensus 124 ~~~~~~~d~~~l~~~l~~~------~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~---------- 187 (402)
T TIGR02006 124 PKSNGLIDLEELKAAIRDD------TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIP---------- 187 (402)
T ss_pred cCCCCcCCHHHHHHhcCCC------CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcc----------
Confidence 9999999999999988654 358999999999999999999999999999988899888321100
Q ss_pred CcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccc
Q psy852 251 KTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAI 330 (891)
Q Consensus 251 ~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (891)
T Consensus 188 -------------------------------------------------------------------------------- 187 (402)
T TIGR02006 188 -------------------------------------------------------------------------------- 187 (402)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccc
Q psy852 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDY 410 (891)
Q Consensus 331 ~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~ 410 (891)
+ + +++ ..+|.+++++||+ ++|.++|++++++..... ..+.+.....+
T Consensus 188 ----------------~--~----~~~-~~~D~~~~s~~K~-~gp~G~G~l~~~~~~~~~----~~~~~~g~~~~----- 234 (402)
T TIGR02006 188 ----------------I--N----VNE-LKVDLMSISGHKI-YGPKGIGALYVRRKPRVR----LEALIHGGGHE----- 234 (402)
T ss_pred ----------------c--C----ccc-cCCCEEEEehhhh-cCCCceEEEEEccCCCCC----CCceecCCCcc-----
Confidence 0 0 011 1479999999995 679999999999653221 12211111100
Q ss_pred ccccc-CCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 411 RHWGI-PLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 411 ~~~~~-~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
..+ .++-.. ..+++-.+++.+- +++.++.++..++++++.+.|++.++++++++
T Consensus 235 --~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~ 290 (402)
T TIGR02006 235 --RGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGD 290 (402)
T ss_pred --CCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 011 133333 2345556666653 57888899999999999999998888877753
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-16 Score=183.89 Aligned_cols=281 Identities=17% Similarity=0.173 Sum_probs=183.1
Q ss_pred cccccC-CCCCCHHHHHHHHHHHhcCCCCCcc---ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 19 RFHAYF-PSGNSYPSVLADMLSDAIGCIGFSW---AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~l~~~~n~~~~~~---~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
.|.+-- +.....|.+...++......+-..| ..+....++..++.+++++++|++...+
T Consensus 71 ~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l----------------- 133 (481)
T PRK04366 71 GFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTL----------------- 133 (481)
T ss_pred ceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEE-----------------
Confidence 455554 3334556666666665211233344 2566677999999999999999974321
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK 174 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~ 174 (891)
..++|+. ..+..+.++|.... .+ |. .++..|+++..+|.+...++...|.+++.|+++++
T Consensus 134 -------------~~~~GA~-a~~~~l~~~r~~~~-~~----Gd-~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~ 193 (481)
T PRK04366 134 -------------QPAAGAH-GELTGLLMIRAYHE-AR----GD-TKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNED 193 (481)
T ss_pred -------------EeCcHHH-HHHHHHHHHHHHhh-cc----Cc-CCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCC
Confidence 1134432 22332233333110 00 00 02345888899999999998888889999999989
Q ss_pred CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc-cCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcc
Q psy852 175 NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-DNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTS 253 (891)
Q Consensus 175 g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-Dpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~ 253 (891)
|.+|+++|++.+.+++ .+|+++..| .+|.+ +|+++|+++|+++|+++|||+|+...++ |
T Consensus 194 ~~~D~e~L~~~i~~~t------~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~----------g--- 253 (481)
T PRK04366 194 GLVDLEALKAAVGEDT------AALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAIL----------G--- 253 (481)
T ss_pred CCcCHHHHHhhcccCC------eEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhc----------c---
Confidence 9999999999987653 467777776 78988 6999999999999988888888721100 0
Q ss_pred cccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccce
Q psy852 254 FDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDV 333 (891)
Q Consensus 254 ~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (891)
T Consensus 254 -------------------------------------------------------------------------------- 253 (481)
T PRK04366 254 -------------------------------------------------------------------------------- 253 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCce-----EEEEeccccchhhcccCccccCCCCCC-c
Q psy852 334 WLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSS-----CLWVADRYKLTSALVVDPLYLQHGHEG-A 407 (891)
Q Consensus 334 ~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g-----~~~~r~~~~~~~~~~~~~~y~~~~~~~-~ 407 (891)
.+.+ +-..+|++++++|||+++|+++| ++++|++. ...+ .+..+....+. .
T Consensus 254 ------------~~~~-------~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~--~~~l--p~~~v~~~g~~~~ 310 (481)
T PRK04366 254 ------------KARP-------GDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEEL--APFL--PVPVVEKDGDRYR 310 (481)
T ss_pred ------------cCCc-------cccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhh--HhhC--CCCeeeccCCcee
Confidence 0000 11147999999999999998765 78888642 2212 11221111000 0
Q ss_pred ccc-cccccCCCCCh-----hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccC
Q psy852 408 IDY-RHWGIPLSRRF-----RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD 459 (891)
Q Consensus 408 ~~~-~~~~~~~sr~~-----~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~ 459 (891)
... +...+.-.|.+ .++++|..+..+|.+|+++++++++++++|++++|.+.
T Consensus 311 l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~ 368 (481)
T PRK04366 311 LDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI 368 (481)
T ss_pred ecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 000 11122222322 35799999999999999999999999999999999876
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-15 Score=169.23 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=124.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc---CCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAI---GCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~---n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
.||++-.+++..+.++..+..... .+....+..+.....+...+.+.+++++|.+++..
T Consensus 2 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i------------------ 63 (381)
T PRK02948 2 IYLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGI------------------ 63 (381)
T ss_pred EeccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeE------------------
Confidence 377887777777777766654332 23334556667778888899999999999865421
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d 172 (891)
.+++|++...++....+.+... .++..|+++..+|+|+...+. ..|.+++.|+++
T Consensus 64 -----------~~~~g~t~a~~~~~~~~~~~~~-----------~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~ 121 (381)
T PRK02948 64 -----------YFTSGGTESNYLAIQSLLNALP-----------QNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVD 121 (381)
T ss_pred -----------EEeCcHHHHHHHHHHHHHHhcc-----------CCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeC
Confidence 1345665433322223322210 022358889999999977763 357799999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++|.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|.++|+++|+++|+|+++
T Consensus 122 ~~~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~ 177 (381)
T PRK02948 122 KSGLIRLVDLERAITPD------TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQ 177 (381)
T ss_pred CCCCCCHHHHHHhcCCC------CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChh
Confidence 99999999999988643 459999999999999999999999999999999999876
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-16 Score=177.45 Aligned_cols=287 Identities=17% Similarity=0.086 Sum_probs=196.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHhc----CCCCCccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAI----GCIGFSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~~~ 94 (891)
|+++-.+++.++.++..+..... |+....+..+....++-+++.+.+++++|.++ ...
T Consensus 2 Yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v----------------- 64 (371)
T PF00266_consen 2 YLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEV----------------- 64 (371)
T ss_dssp EEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEE-----------------
T ss_pred EeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCcccccc-----------------
Confidence 77887777788888777766543 33234556677778888899999999999987 321
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH----HcCCeEEEEe
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILE 170 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~----~~~~~v~~V~ 170 (891)
.+++++|..-+..+..+.+..+ ++..|+++..+|+|...++. ..+.+++.|+
T Consensus 65 ------------~~~~~~t~a~~~~~~~l~~~~~------------~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~ 120 (371)
T PF00266_consen 65 ------------VFTSNGTEALNAVASSLLNPLK------------PGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIP 120 (371)
T ss_dssp ------------EEESSHHHHHHHHHHHHHHHGT------------TTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ------------ccccccchhhhhhhhccccccc------------cccccccccccccccccccccccccchhhhcccc
Confidence 1345666533333333322111 22348888999999985552 3578999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCC
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g 250 (891)
.+.+|.+|++++++.|.++ +.+|++++.+|.+|.+.|+++|+++|+++|+++++|++++-...
T Consensus 121 ~~~~~~~~~~~~~~~l~~~------~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~----------- 183 (371)
T PF00266_consen 121 ADPGGSLDLEDLEEALNPD------TRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCV----------- 183 (371)
T ss_dssp EGTTSSCSHHHHHHHHHTT------ESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS-----------
T ss_pred ccccchhhhhhhhhhhccc------cceEEeecccccccEEeeeceehhhhhccCCceeEechhccccc-----------
Confidence 9999999999999999765 45999999999999999999999999999999999998721110
Q ss_pred CcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccc
Q psy852 251 KTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAI 330 (891)
Q Consensus 251 ~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (891)
T Consensus 184 -------------------------------------------------------------------------------- 183 (371)
T PF00266_consen 184 -------------------------------------------------------------------------------- 183 (371)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchh-hcccCccccCCC--CCCc
Q psy852 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS-ALVVDPLYLQHG--HEGA 407 (891)
Q Consensus 331 ~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~-~~~~~~~y~~~~--~~~~ 407 (891)
. + ++ +. -.+|.+++++|| +++|.+.|++++|++..-.. .......|.... .+..
T Consensus 184 ---~------------i--d~----~~-~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (371)
T PF00266_consen 184 ---P------------I--DL----DE-LGADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYG 240 (371)
T ss_dssp ---S----------------T----TT-TTESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHC
T ss_pred ---c------------c--cc----cc-cccceeeecccc-cCCCCchhhheehhhhhhccccccccccccccccchhcc
Confidence 0 0 00 11 147999999999 99999999999998532110 001111111000 0000
Q ss_pred ccccccccC-CCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 408 IDYRHWGIP-LSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 408 ~~~~~~~~~-~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
.....+.++ |+.+.. .+++..+++.+...|+.++.++..++++++.+.|.+.++++++++
T Consensus 241 ~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~ 302 (371)
T PF00266_consen 241 LADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGP 302 (371)
T ss_dssp HHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSS
T ss_pred cccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeee
Confidence 111122333 334443 467788899998999999999999999999999999999998864
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=175.05 Aligned_cols=278 Identities=14% Similarity=0.134 Sum_probs=188.2
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCC--CCC--ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGC--IGF--SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~--~~~--~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
|+++-..++..+.++..+...+.+. |.. .+..+.....+..++.+++++++|.+.+..
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v------------------ 62 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEV------------------ 62 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeE------------------
Confidence 6777777777777777665554221 211 233455566778889999999999875421
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d 172 (891)
.+++|++...+..+..+..... . ..+..|+++..+|+|+..+.. ..|.+++.|+++
T Consensus 63 -----------~~~~g~t~a~~~~l~~l~~~~~--~--------~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~ 121 (353)
T TIGR03235 63 -----------IFTSGATESNNLAILGLARAGE--Q--------KGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD 121 (353)
T ss_pred -----------EEeCCHHHHHHHHHHHHHHhcc--c--------CCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccC
Confidence 1345665444443333322110 0 012358899999999977763 257799999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKT 252 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~ 252 (891)
+++.+|+++|++.+++. +.+|+++..+|.+|.+.|+++|+++|+++|+++|+|+|++.....
T Consensus 122 ~~~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~------------ 183 (353)
T TIGR03235 122 ESGRIDVDELADAIRPD------TLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKIT------------ 183 (353)
T ss_pred CCCcCCHHHHHHhCCCC------CEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcc------------
Confidence 99999999999988643 468999999999999999999999999999999999987321100
Q ss_pred ccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccc
Q psy852 253 SFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFD 332 (891)
Q Consensus 253 ~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (891)
T Consensus 184 -------------------------------------------------------------------------------- 183 (353)
T TIGR03235 184 -------------------------------------------------------------------------------- 183 (353)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccc
Q psy852 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 412 (891)
Q Consensus 333 ~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 412 (891)
+ +. + -..+|.+++++||| ++|.++|+++++++.... ....|.+......
T Consensus 184 --------------~--~~----~-~~~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~~--~~~~~~~~~~~~~------- 232 (353)
T TIGR03235 184 --------------V--DL----S-ADRIDLISCSGHKI-YGPKGIGALVIRKRGKPK--APLKPIMFGGGQE------- 232 (353)
T ss_pred --------------c--cc----c-ccCCCEEEeehhhc-CCCCceEEEEEccCcccc--cccCceeeCCCCc-------
Confidence 0 00 0 01379999999998 689999999999763211 1123323221110
Q ss_pred ccc-CCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 413 WGI-PLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 413 ~~~-~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
..+ .++... ..+++..+++.+ .+|..++.++..++++++.+.|.+ ++++++++
T Consensus 233 ~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~ 287 (353)
T TIGR03235 233 RGLRPGTLPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGD 287 (353)
T ss_pred CccccCCCChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCC
Confidence 011 233333 235566666665 368889999999999999999988 88888854
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-15 Score=170.56 Aligned_cols=89 Identities=13% Similarity=0.044 Sum_probs=73.2
Q ss_pred EEEecCCCChHHHHHH----HHcCCeE----EEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRL----KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA 215 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v----~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~ 215 (891)
.|+++..+|.|+..++ ...|.++ +.++.+.+|.+|++++++.++... ..+.+|++++.++.+|.+.|++
T Consensus 115 ~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~t~lv~~~~v~~~tG~~~~~~ 191 (406)
T TIGR01814 115 KILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNG---DDIAVILLSGVQYYTGQLFDMA 191 (406)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcC---CCeEEEEEeccccccceecCHH
Confidence 5888899999976654 2345565 577778889999999999886431 2356999999999999999999
Q ss_pred HHHHHHHHcCCceeeecccc
Q psy852 216 EIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 216 ~I~~i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++|++++||++++
T Consensus 192 ~i~~~~~~~g~~~~vD~aq~ 211 (406)
T TIGR01814 192 AITRAAHAKGALVGFDLAHA 211 (406)
T ss_pred HHHHHHHHcCCEEEEEcccc
Confidence 99999999999999999884
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-15 Score=187.22 Aligned_cols=164 Identities=10% Similarity=-0.085 Sum_probs=104.1
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhc-----CCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAI-----GCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
-.||+|-.+++..+..+.+++...+ |+. ..+..+..++++-.++.+.+++++|.++... .-
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~-s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~------~V------- 100 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPH-SQSDSSMRSSDTIESARQQVLEYFNAPPSDY------AC------- 100 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCC-cCcchhhhHHHHHHHHHHHHHHHhCCCccce------EE-------
Confidence 3699998777666666666655432 332 2344566678888889999999999865420 00
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH---cCCeEEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKIL 169 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~---~~~~v~~V 169 (891)
.||+|.|...|+.+..+ + .+ +.-.|+++..+|.|+.-...+ .|.+++.|
T Consensus 101 --------------vFtsnaT~alnlva~~l--------~-~~-----~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v 152 (805)
T PLN02724 101 --------------VFTSGATAALKLVGETF--------P-WS-----SESHFCYTLENHNSVLGIREYALEKGAAAIAV 152 (805)
T ss_pred --------------EEeCChHHHHHHHHHHC--------C-CC-----CCCeEEEeeccccchHHHHHHHHHcCCeEEec
Confidence 24566664434332221 1 00 122477789999998754333 46789999
Q ss_pred ecC--------CCCcccH--HHHHHHHHh----hhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 170 EPD--------DKNSLRG--ATLRQVMQQ----DETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 170 ~~d--------~~g~id~--~~L~~~l~~----~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
+++ +.|.+++ ++|++.++. ....+..+-+|++++.+|++|.+.||+.|..+++.
T Consensus 153 ~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~ 220 (805)
T PLN02724 153 DIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDN 220 (805)
T ss_pred cchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHh
Confidence 887 5566655 667776431 11112234699999999999999999987655543
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=172.18 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=147.1
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.++..+. ...+.+++.|+++.++.+|+++|++.+++. +.+|+++..+|.+|.+.|+++|.+
T Consensus 88 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~------~~~v~~~~~~n~tG~~~~~~~i~~ 161 (376)
T TIGR01977 88 HVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTN------TKLIVVSHASNVTGTILPIEEIGE 161 (376)
T ss_pred EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCC------CeEEEEECCCCCccccCCHHHHHH
Confidence 4788888999886543 334779999999999999999999988643 458889999999999999999999
Q ss_pred HHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchh
Q psy852 220 VAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEG 299 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (891)
+|+++|+++++|+|++....-
T Consensus 162 l~~~~~~~livD~a~~~g~~~----------------------------------------------------------- 182 (376)
T TIGR01977 162 LAQENGIFFILDAAQTAGVIP----------------------------------------------------------- 182 (376)
T ss_pred HHHHcCCEEEEEhhhccCccC-----------------------------------------------------------
Confidence 999999999999988421110
Q ss_pred hHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCce
Q psy852 300 VLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSS 379 (891)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g 379 (891)
+ ++. -..+|.+.+++|||+++|.++|
T Consensus 183 -----------------------------------------------~--~~~-----~~~~D~~~~s~~K~l~~p~g~g 208 (376)
T TIGR01977 183 -----------------------------------------------I--DMT-----ELAIDMLAFTGHKGLLGPQGTG 208 (376)
T ss_pred -----------------------------------------------C--Cch-----hcCCCEEEecccccccCCCCce
Confidence 0 000 0147999999999999999999
Q ss_pred EEEEeccccchhhcccCccccCCCCCCcccccccccC-CCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhc
Q psy852 380 CLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP-LSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 457 (891)
Q Consensus 380 ~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~ 457 (891)
++++++...+.........+-..... ......-.++ ++... ..++++.+++.+...|++++.++..++++++.+.|.
T Consensus 209 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~ 287 (376)
T TIGR01977 209 GLYIREGIKLKPLKSGGTGSHSALID-QPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLR 287 (376)
T ss_pred EEEEcCCcCcCceecCCCcccccccc-ccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence 99998875332211111111000000 0000000111 23333 356788999999999999999999999999999999
Q ss_pred cCCccccccC
Q psy852 458 RDPRFEISND 467 (891)
Q Consensus 458 ~~~~~eVv~~ 467 (891)
+.++++++++
T Consensus 288 ~~~~~~~~~~ 297 (376)
T TIGR01977 288 EINKVKIYGP 297 (376)
T ss_pred cCCCeEEeCC
Confidence 9899988864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-14 Score=162.36 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=117.9
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCCC---CccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCIG---FSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~---~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
.|+++-.+++..+.++..+...+..... ..+..+....++..++.+.+++++|.+....
T Consensus 19 ~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v------------------ 80 (397)
T TIGR01976 19 VFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEV------------------ 80 (397)
T ss_pred EEecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeE------------------
Confidence 7888877777777777666655432211 2233344455677888999999999865421
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH----HHHcCCeEEEEec
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEP 171 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~ 171 (891)
.+++|++...+.....+.... .+...|+++..+|+|+... +...|.+++.+++
T Consensus 81 -----------~~~~~~t~~l~~~~~~~~~~~------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~ 137 (397)
T TIGR01976 81 -----------VFGANATSLTFLLSRAISRRW------------GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARV 137 (397)
T ss_pred -----------EEeCCHHHHHHHHHHHHHhcC------------CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEec
Confidence 123444432222222221111 1222478888899987643 3446789999999
Q ss_pred CC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 172 DD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 172 d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++ ++.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|+++|+++|+++++|+|+
T Consensus 138 ~~~~~~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 195 (397)
T TIGR01976 138 DEATGELHPDDLASLLSPR------TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVH 195 (397)
T ss_pred cccCCCcCHHHHHHhcCCC------ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhh
Confidence 86 7999999999998654 358999999999999999999999999999999999987
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-15 Score=167.69 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=121.0
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhc--CCCCCcccc----ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAI--GCIGFSWAA----SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND 91 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~--n~~~~~~~~----~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~ 91 (891)
+.||+|-.+++..+.++..+..... +..+..+.. +-.+...-..+.+++++++|.+.+..
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v-------------- 69 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREI-------------- 69 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeE--------------
Confidence 4689998888777777776666443 332222211 11122344456788999999875421
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH---cCCeEEE
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKI 168 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~---~~~~v~~ 168 (891)
.+++|||...++.+..+.+... .+...|+++..+|+|+..++.. .+.+++.
T Consensus 70 ---------------~~~~g~t~al~~~l~~l~~~~~-----------~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~ 123 (404)
T PRK14012 70 ---------------VFTSGATESDNLAIKGAAHFYQ-----------KKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 123 (404)
T ss_pred ---------------EEeCCHHHHHHHHHHHHHHhhc-----------CCCCEEEEecCccHHHHHHHHHHHhCCCEEEE
Confidence 1356776544443333332110 0123488889999999877632 4779999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
|++|++|.+|+++|++.|++. +.+|+++..+|.+|.+.|+++|.++|+++|+++|+|+|++
T Consensus 124 v~~~~~g~~d~~~l~~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~ 184 (404)
T PRK14012 124 LDPQSNGIIDLEKLEAAMRDD------TILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQS 184 (404)
T ss_pred EccCCCCcCCHHHHHHhcCCC------CEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchh
Confidence 999999999999999999764 3589999999999999999999999999999999999883
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=164.18 Aligned_cols=264 Identities=13% Similarity=0.125 Sum_probs=174.2
Q ss_pred HHHHHHH-HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH
Q psy852 443 RRHCELA-KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK 521 (891)
Q Consensus 443 ~~~lelA-r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K 521 (891)
...++.+ +.+++.+...++ +++ +++|+|++++.++..+.....+ ++..|+++..+|+++..
T Consensus 42 ~~~~~~~r~~la~~~g~~~~-~v~--~t~~~t~a~~~~l~~~~~~~~~---------------~g~~vl~~~~~h~s~~~ 103 (364)
T PLN02651 42 EDAVEKARAQVAALIGADPK-EII--FTSGATESNNLAIKGVMHFYKD---------------KKKHVITTQTEHKCVLD 103 (364)
T ss_pred HHHHHHHHHHHHHHhCCCCC-eEE--EeCCHHHHHHHHHHHHHHhccC---------------CCCEEEEcccccHHHHH
Confidence 3334434 466677765554 566 7889999999998876543211 12368899999999877
Q ss_pred HHH---HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------hhh-----hhcCC---
Q psy852 522 AAM---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYR-----KSQGI--- 579 (891)
Q Consensus 522 aa~---l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~-----~ldGi--- 579 (891)
.+. ..|++++.+|++++|.+|+++|+++|++++. .+++ .+..|+.. |++ ++|++
T Consensus 104 ~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~----lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~ 179 (364)
T PLN02651 104 SCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTA----LVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAV 179 (364)
T ss_pred HHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcE----EEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhh
Confidence 764 2478999999998999999999999976432 1222 23345444 443 24442
Q ss_pred ---------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccccc-chHHHH
Q psy852 580 ---------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR-SLKLWF 649 (891)
Q Consensus 580 ---------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~-aL~lW~ 649 (891)
-.+|++++++||| ++|.|+|++++|++..- . + .+.+...+.+. .+. .++.... .+.+..
T Consensus 180 g~~~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~-~-l--~p~~~g~~~~~-----~~~-~GT~~~~~~~~l~~ 248 (364)
T PLN02651 180 GKIPVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPRV-R-L--EPLMSGGGQER-----GRR-SGTENTPLVVGLGA 248 (364)
T ss_pred CCcccCcccCCCCEEEechhhh-CCCCceEEEEEcCCCCC-C-C--CccccCCCccC-----Ccc-CCCccHHHHHHHHH
Confidence 2389999999998 68999999999986321 1 1 11111100000 000 1222222 345666
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCC--Cc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 650 VIRTYGLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISND--VR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 650 ~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~--~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
+++.+-. +.+++.++..++++++.+.|++ +++++++++ ++ .++++|.+.+. ..+.+...|.+ +.
T Consensus 249 al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~--i~ 318 (364)
T PLN02651 249 ACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYV-------EGESLLMGLKE--VA 318 (364)
T ss_pred HHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCC-------CHHHHHHHhCC--EE
Confidence 7776654 4588888999999999999986 689999985 22 46999999754 35677777754 55
Q ss_pred EEeecccc-------------------CCeEE-EEecCCCCHHHHH
Q psy852 724 HMVPASQE-------------------QNDEV-FELQERKRKDDLA 749 (891)
Q Consensus 724 ~~s~s~~~-------------------g~~~l-~sv~~~tT~edId 749 (891)
+.+++.+. ...++ +|++++||++|||
T Consensus 319 v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 319 VSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred EEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 44444321 13467 9999999999986
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-14 Score=155.59 Aligned_cols=136 Identities=18% Similarity=0.082 Sum_probs=99.7
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.+|...++..++.+++++++|.++... . .++++|+......+..+ ..
T Consensus 26 ~~~~~~~~~~~~~~~la~~~g~~~~~~-------~---------------------~~~~~~t~al~~~~~~~--~~--- 72 (356)
T cd06451 26 RSPEFLALMDEILEGLRYVFQTENGLT-------F---------------------LLSGSGTGAMEAALSNL--LE--- 72 (356)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCE-------E---------------------EEecCcHHHHHHHHHHh--CC---
Confidence 577788888899999999999954321 0 13456654322222222 11
Q ss_pred CCccccccccCCeEEEecCCCChHH--HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCV--EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC 208 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv--~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~ 208 (891)
+.-.|+++..+|++. ...+...+.+++.|++|+++.+|+++|++.+++. .|.+|+++..+|.+
T Consensus 73 ----------~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~-----~~~~v~i~~~~~~~ 137 (356)
T cd06451 73 ----------PGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQH-----DIKAVTLTHNETST 137 (356)
T ss_pred ----------CCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhcc-----CCCEEEEeccCCCc
Confidence 112366666788873 4455667789999999988999999999999752 14578888899999
Q ss_pred ccccCHHHHHHHHHHcCCceeeeccc
Q psy852 209 CSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 209 GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
|.+.|+++|.++|+++|+++++|+++
T Consensus 138 G~~~~~~~i~~~a~~~~~~li~D~~~ 163 (356)
T cd06451 138 GVLNPLEGIGALAKKHDALLIVDAVS 163 (356)
T ss_pred ccccCHHHHHHHHHhcCCEEEEeeeh
Confidence 99999999999999999999999977
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=180.27 Aligned_cols=248 Identities=15% Similarity=0.086 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcc
Q psy852 55 CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFV 134 (891)
Q Consensus 55 ~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~ 134 (891)
..++-.++.++|++++|++.- .|+| ..++-|-.+.|+.+..+-+.+
T Consensus 566 ~~~~~~~~r~~la~i~g~~~v----------~f~p-----------------naga~ge~a~~~vi~~~~~~~------- 611 (993)
T PLN02414 566 YQEMFEDLGDLLCEITGFDSF----------SLQP-----------------NAGAAGEYAGLMVIRAYHLSR------- 611 (993)
T ss_pred HHHHHHHHHHHHHHHhCCCeE----------EEcC-----------------CCcHHHHHHHHHHHHHHHhcc-------
Confidence 456778899999999999432 2333 222234344444444331111
Q ss_pred ccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH
Q psy852 135 DEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL 214 (891)
Q Consensus 135 ~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl 214 (891)
|. ..+-+|++|..+|.|+..++.+.|.+++.|++|++|.+|+++|++.+++.+. .+.+|++|.+||..|.++||
T Consensus 612 --Gd-~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~---~ta~V~vt~pSn~gg~e~~I 685 (993)
T PLN02414 612 --GD-HHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKD---NLAALMVTYPSTHGVYEEGI 685 (993)
T ss_pred --CC-CCCCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCC---CeEEEEEECCCccccccchH
Confidence 11 1345699999999999999988889999999999999999999999986321 25799999999999999999
Q ss_pred HHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCC
Q psy852 215 AEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHP 294 (891)
Q Consensus 215 ~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (891)
++|+++|+++|+.++||||+. +++.
T Consensus 686 ~eI~~iah~~Galv~vDgAq~------------------------~a~~------------------------------- 710 (993)
T PLN02414 686 DEICDIIHDNGGQVYMDGANM------------------------NAQV------------------------------- 710 (993)
T ss_pred HHHHHHHHHcCCEEEEEecCH------------------------Hhcc-------------------------------
Confidence 999999999999999999981 0000
Q ss_pred ccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCc
Q psy852 295 FVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLT 374 (891)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~ 374 (891)
.+..| +-..+|.+.+++|||+++
T Consensus 711 --------------------------------------------------~l~~p-------~~~GaD~~~~s~HK~f~~ 733 (993)
T PLN02414 711 --------------------------------------------------GLTSP-------GFIGADVCHLNLHKTFCI 733 (993)
T ss_pred --------------------------------------------------CcCCc-------cccCCCEEEecCCccCCc
Confidence 00000 111479999999999998
Q ss_pred cCC-----ceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCCh-------hHHHHHHHHHHhcHHHHHHHH
Q psy852 375 AFD-----SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-------RSLKLWFVIRTYGLSGLQKYI 442 (891)
Q Consensus 375 p~~-----~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~-------~~l~~w~~l~~~g~~G~~~ii 442 (891)
|.+ .|.+.+|+. +...+. ...-....+..+.....-.|++.. .++..|..++.+|.+|+.+..
T Consensus 734 P~G~GGPg~G~l~~~~~--L~p~lP---g~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a 808 (993)
T PLN02414 734 PHGGGGPGMGPIGVKKH--LAPFLP---SHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDAS 808 (993)
T ss_pred CcccCCCCeeeEEEchh--hcccCC---CCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHH
Confidence 886 899999863 322221 111001011011101111255442 245789999999999999999
Q ss_pred HHHHHHHHHHHHhhccC
Q psy852 443 RRHCELAKLFEGKVRRD 459 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~ 459 (891)
+.++.+|+|++++|...
T Consensus 809 ~~a~~nAnYl~~rL~~~ 825 (993)
T PLN02414 809 KIAILNANYMAKRLEGH 825 (993)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999763
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-14 Score=158.63 Aligned_cols=277 Identities=11% Similarity=0.091 Sum_probs=182.0
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH----H
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----A 523 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka----a 523 (891)
+.+.+++.+...+.-+|+ ++.|+++++..++.+. . .+.-.|+++..+|.++..+ +
T Consensus 49 ~~~~la~~~~~~~~~~v~--~~~g~t~al~~~~~~~----~---------------~~gd~vl~~~~~~~~~~~~~~~~~ 107 (376)
T TIGR01977 49 TRQLLAKLFNAPSSAHVV--FTNNATTALNIALKGL----L---------------KEGDHVITTPMEHNSVARPLECLK 107 (376)
T ss_pred HHHHHHHHhCcCCCCeEE--EeCCHHHHHHHHHHhc----c---------------CCCCEEEECcchhhHHHHHHHHHH
Confidence 334555565543332455 6778888887665441 1 1123577888899887544 3
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCC--------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGI-------- 579 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi-------- 579 (891)
...|.+++.++.+.++.+|+++|++++++.+ ..++++. ..|... |+++ +|+.
T Consensus 108 ~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~----~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~ 183 (376)
T TIGR01977 108 EQIGVEITIVKCDNEGLISPERIKRAIKTNT----KLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPI 183 (376)
T ss_pred HHcCcEEEEEecCCCCCcCHHHHHHhcCCCC----eEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCC
Confidence 4458899999999889999999999996532 1222322 244443 4431 2321
Q ss_pred ----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc-cccc-ccchHHHHHHHH
Q psy852 580 ----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP-LSRR-FRSLKLWFVIRT 653 (891)
Q Consensus 580 ----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~-~SRr-~~aL~lW~~L~~ 653 (891)
.++|++++++|||+++|.|+|+++++++..+.+.......+ ..............++ ++.. ...+.++.+++.
T Consensus 184 ~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~ 262 (376)
T TIGR01977 184 DMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGS-HSALIDQPSELPDRFESGTLNTPGIAGLNAGIKF 262 (376)
T ss_pred CchhcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCcc-ccccccccccchhhccCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999999886433222111010 0000000000000011 1111 223678888999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----ceeEEEEEecCCcchhhhhhHHHHHHHHHhC-CcEEEeec
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----RLGLVCFRLRSENNLIADQNNRKLLEDINAS-GRLHMVPA 728 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~s 728 (891)
+...|++++.++..++++++.+.|++.++++++.+. ..++++|++.+. ....+.+.|.+. |+....+.
T Consensus 263 ~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~~gi~v~~g~ 335 (376)
T TIGR01977 263 IEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSEEVADILDEKFDIATRTGL 335 (376)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHHHHHHHHhccCCEEEEccc
Confidence 999999999999999999999999999999998642 367999998643 356788888877 87754433
Q ss_pred cc----------cCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 729 SQ----------EQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 729 ~~----------~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
.+ .....+ ++++.++|++|||+++++|++
T Consensus 336 ~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 336 HCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 21 123466 999999999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-14 Score=161.15 Aligned_cols=274 Identities=15% Similarity=0.176 Sum_probs=173.0
Q ss_pred HHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH
Q psy852 444 RHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA 522 (891)
Q Consensus 444 ~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka 522 (891)
..++.++ .+++.+...++ +|+ +++|+|+++..++...+....+ +...|+++..+|+++..+
T Consensus 47 ~~~~~~r~~la~~~g~~~~-~v~--~~~g~t~a~~~~l~~l~~~~~~---------------~g~~Vi~~~~~h~s~~~~ 108 (402)
T TIGR02006 47 EAVENARNQVAELIGADSR-EIV--FTSGATESNNLAIKGIAHFYKS---------------KGNHIITSKTEHKAVLDT 108 (402)
T ss_pred HHHHHHHHHHHHHhCCCCC-eEE--EeCCHHHHHHHHHHHHHHhhcC---------------CCCEEEECCCccHHHHHH
Confidence 3444444 56666665444 566 7789999999988765432111 223688889999999887
Q ss_pred HHH---cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh-----hhcCC----
Q psy852 523 AMM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR-----KSQGI---- 579 (891)
Q Consensus 523 a~l---~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~-----~ldGi---- 579 (891)
+.. .|++++.||++++|.+|+++|+++|++.+ ..+++. +..|+.. |++ ++|++
T Consensus 109 ~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~----~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g 184 (402)
T TIGR02006 109 CRYLEREGFEVTYLPPKSNGLIDLEELKAAIRDDT----ILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVG 184 (402)
T ss_pred HHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCC----EEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcC
Confidence 643 48899999999999999999999997542 122222 2345544 433 23331
Q ss_pred --------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc-ccccc-cchHHHH
Q psy852 580 --------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP-LSRRF-RSLKLWF 649 (891)
Q Consensus 580 --------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~-~SRr~-~aL~lW~ 649 (891)
..+|++++++||++ +|.|+|+++++++.... + .+.+...+.+ ..++ ++-.. ..+.+..
T Consensus 185 ~~~~~~~~~~~D~~~~s~~K~~-gp~G~G~l~~~~~~~~~--~--~~~~~g~~~~-------~~~~~gt~~~~~~~al~~ 252 (402)
T TIGR02006 185 KIPINVNELKVDLMSISGHKIY-GPKGIGALYVRRKPRVR--L--EALIHGGGHE-------RGMRSGTLPTHQIVGMGE 252 (402)
T ss_pred CcccCccccCCCEEEEehhhhc-CCCceEEEEEccCCCCC--C--CceecCCCcc-------CCccCCCccHHHHHHHHH
Confidence 25899999999965 59999999999763221 0 1111000000 0011 11111 1234445
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc--e-e--EEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 650 VIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR--L-G--LVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 650 ~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~--~-~--iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
+++.+- +++.++.++..++++++.+.|++++++++++++. . + +|+|.. . ..+.+...| +++..
T Consensus 253 al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~--~-------~~~~~~~~l--~~i~v 320 (402)
T TIGR02006 253 AFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY--V-------EGESLIMAL--KDLAV 320 (402)
T ss_pred HHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC--c-------CHHHHHHhc--CCEEE
Confidence 555443 5788888899999999999999999998875432 2 3 355553 2 122344444 35443
Q ss_pred Eeecccc-------------------CCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 725 MVPASQE-------------------QNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 725 ~s~s~~~-------------------g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
.+++.+. ...++ +|++++||++|||+++++|+++++.+.
T Consensus 321 ~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 321 SSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred echhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333221 13567 999999999999999999999885443
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-14 Score=165.35 Aligned_cols=268 Identities=15% Similarity=0.163 Sum_probs=171.9
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHH
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQV 549 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~a 549 (891)
++|+.+.+.++..+|....++ | ...+..|+++..+|++..+.+.+.|++++.+|++.+|.+|+++|+++
T Consensus 136 ~~GA~a~~~~l~~~r~~~~~~----------G-d~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~ 204 (481)
T PRK04366 136 AAGAHGELTGLLMIRAYHEAR----------G-DTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAA 204 (481)
T ss_pred CcHHHHHHHHHHHHHHHhhcc----------C-cCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhh
Confidence 455667777666666533211 0 01245699999999999999999999999999998999999999999
Q ss_pred HHhhhhcCCccEEEEe--cCCcc-c--------hhh-----hhcCC-------------CCccEEEEcCcccCCcccccE
Q psy852 550 MQQDETMGYIPFFVST--TLGTT-S--------CYR-----KSQGI-------------EYADSFNVNVNKWLLTAFDSS 600 (891)
Q Consensus 550 I~~d~~~g~ip~~Vva--taGTT-~--------c~~-----~ldGi-------------~~aDSIs~d~HK~L~~P~g~G 600 (891)
|+++++ .++|.+ ..|.. . |++ ++|+. .++|++++|+|||+++|.|+|
T Consensus 205 i~~~t~----~V~v~~Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~G 280 (481)
T PRK04366 205 VGEDTA----ALMLTNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGG 280 (481)
T ss_pred cccCCe----EEEEeCCCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCC
Confidence 976532 223322 34443 1 332 12321 358999999999999998765
Q ss_pred -----EEEEeCCccchhhhccCCCccc-cCCCCCccc-cCCccccccccc-----chHHHHHHHHHHHhhHHHHHHHHHH
Q psy852 601 -----CLWVADRYKLTSALVVDPLYLQ-HGHEGAIDY-RHWGIPLSRRFR-----SLKLWFVIRTYGLSGLQKYIRRHCE 668 (891)
Q Consensus 601 -----~llvR~~~~L~~~l~~~~~Yl~-~~~e~~~~~-~~~ti~~SRr~~-----aL~lW~~L~~lG~~G~~~~i~~~~~ 668 (891)
++++|++ +.+.+.. .... .+..-.... +...+.-.|.+. +++.|..++.+|.+|++++.++++.
T Consensus 281 gp~~G~l~~~~~--~~~~lp~--~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~ 356 (481)
T PRK04366 281 GPGSGPVGVKEE--LAPFLPV--PVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVL 356 (481)
T ss_pred CCCeeeeeehhh--hHhhCCC--CeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888765 2222210 0000 000000000 111111122222 4789999999999999999999999
Q ss_pred HHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-ccCCeEE-EEecCCCCH
Q psy852 669 LAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS-QEQNDEV-FELQERKRK 745 (891)
Q Consensus 669 lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~-~~g~~~l-~sv~~~tT~ 745 (891)
+++||.++|+++ +++.. .+..+.+.|...... .-+..+.++.++|.+.|+....... ......+ ++++.++|+
T Consensus 357 ~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~ 432 (481)
T PRK04366 357 NANYLKARLKDI--YDLPYDRPCMHEFVLSGKKLK--ETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESK 432 (481)
T ss_pred HHHHHHHHhHhh--CcccCCCCeeEEEEEECcccc--ccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCH
Confidence 999999999987 44432 233344444432110 0022567899999999986331110 1113356 999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy852 746 DDLAYKRSFFVRMLG 760 (891)
Q Consensus 746 edId~li~~L~ei~~ 760 (891)
+|||+++++|+++..
T Consensus 433 edid~l~~~l~~i~~ 447 (481)
T PRK04366 433 ETLDAFIAAMKQIAE 447 (481)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=157.48 Aligned_cols=273 Identities=14% Similarity=0.083 Sum_probs=174.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC---ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy852 26 SGNSYPSVLADMLSDAIGCIGF---SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTP 102 (891)
Q Consensus 26 ~~~~~~~~~~~~l~~~~n~~~~---~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~ 102 (891)
.++..++++..+........+. .+...........+..+.+|+++|.+..
T Consensus 29 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~--------------------------- 81 (387)
T PRK09331 29 GGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEA--------------------------- 81 (387)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcE---------------------------
Confidence 3556666666665554322111 2333333334556667788888887532
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec--CCCCcccHH
Q psy852 103 ANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNSLRGA 180 (891)
Q Consensus 103 ~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~--d~~g~id~~ 180 (891)
.+++||+......+..+. . +.-.|+++..+|+|+..++...|.+++.|++ |+++.+|++
T Consensus 82 ----~~~~g~t~a~~~al~~l~--~-------------~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 142 (387)
T PRK09331 82 ----RVTHGAREGKFAVMHSLC--K-------------KGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPE 142 (387)
T ss_pred ----EEeCCHHHHHHHHHHHhc--C-------------CCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHH
Confidence 134577644333333321 1 1224888899999999988778889999998 788999999
Q ss_pred HHHHHHHhhhh-cCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCC
Q psy852 181 TLRQVMQQDET-MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHL 259 (891)
Q Consensus 181 ~L~~~l~~~~~-~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~ 259 (891)
+|++.+++..+ .+..+.+|+++..++.+|.+.|+++|+++|+++|+++|+|+|++...+
T Consensus 143 ~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~-------------------- 202 (387)
T PRK09331 143 AYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRM-------------------- 202 (387)
T ss_pred HHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCc--------------------
Confidence 99999976421 123467899999999999999999999999999999999998842110
Q ss_pred CcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeec
Q psy852 260 SPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDG 339 (891)
Q Consensus 260 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 339 (891)
| +|+
T Consensus 203 -------~---------------------------------------------------------------------~~~ 206 (387)
T PRK09331 203 -------P---------------------------------------------------------------------VDG 206 (387)
T ss_pred -------C---------------------------------------------------------------------CCH
Confidence 0 000
Q ss_pred cccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCC
Q psy852 340 AYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR 419 (891)
Q Consensus 340 ~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr 419 (891)
.. ..+|.++.++|||+.+|.+.|++++++. ...........|.... ... ++ ..++
T Consensus 207 ------------~~-----~g~D~~~~s~~K~l~~~~~~G~l~~~~~-~i~~~~~~~~~~~~~~----~~~--~~-~~~~ 261 (387)
T PRK09331 207 ------------KK-----LGADFIVGSGHKSMAASAPSGVLATTEE-YADKVFRTSRKFGVKE----VEL--LG-CTLR 261 (387)
T ss_pred ------------HH-----cCCCEEEeeCcccccCCCCEEEEEECHH-HHhhcccccCCCcccc----eee--ec-eecC
Confidence 00 0369999999999999999998888753 2222112222222110 000 00 0122
Q ss_pred ChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 420 RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 420 ~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
...++.+++++..+-.. .+..++..++++++++.|++.++++++.+
T Consensus 262 ~~~~~~~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~l~g~~~~~~ 307 (387)
T PRK09331 262 GAPLVTLMASFPHVVER--VKRWDEEVKKARWFVDELEKIEGFKQLGE 307 (387)
T ss_pred chHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCEEEecc
Confidence 33455666666544222 23566678899999999999999999853
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=159.25 Aligned_cols=289 Identities=15% Similarity=0.173 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccc
Q psy852 437 GLQKYIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEA 515 (891)
Q Consensus 437 G~~~ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~a 515 (891)
-|....+..+|.|| .+++.|++.+. +|+ +|+|+||+|++.+..--.....+ .+-.|++...+
T Consensus 78 ~y~w~~~~~~E~aR~~VAklInAd~~-dIi--Fts~ATEs~Nlvl~~v~~~~~~~--------------~~k~iitl~~e 140 (428)
T KOG1549|consen 78 SYGWKAEDAVEAAREQVAKLINADPS-DIV--FTSGATESNNLVLKGVARFFGDK--------------TKKHIITLQTE 140 (428)
T ss_pred ccchhhhHHHHHHHHHHHHHhCCCCC-cEE--EeCCchHHHHHHHHHhhcccccc--------------ccceEEEeccc
Confidence 37777888899999 88888888777 577 89999999998876533222111 11279999999
Q ss_pred hHHHHHHHH-H--cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhh-----hhcCC
Q psy852 516 HSCVEKAAM-M--AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYR-----KSQGI 579 (891)
Q Consensus 516 H~Sv~Kaa~-l--~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~-----~ldGi 579 (891)
|.|+.++++ + -|++++.||++.+|..|.+.|+++|+.++.. -..++|++..|..+ |++ |+|+.
T Consensus 141 H~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~l-v~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaA 219 (428)
T KOG1549|consen 141 HPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRL-VSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAA 219 (428)
T ss_pred CcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceE-EEEEecccCccccccHHHHHHHhCcCCcEEEeehh
Confidence 999999996 3 4789999999999999999999999997542 22677778888876 543 45553
Q ss_pred ------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHH
Q psy852 580 ------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647 (891)
Q Consensus 580 ------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l 647 (891)
-.+|.+++++|||++.|- +|+||+|... +.+...+.+...+.+... +.-|..- ..++.+
T Consensus 220 QavG~i~vDV~eln~D~~s~s~HK~ygp~~-iGaLYvr~~~---~~~~~~p~~~GGgq~r~~--rsGT~~~---~~~~~~ 290 (428)
T KOG1549|consen 220 QAVGKIPVDVQELNADFLSISAHKIYGPPG-IGALYVRRKR---PRLRVEPPLSGGGQERGL--RSGTVAT---PLAVGL 290 (428)
T ss_pred hhcCCccccHHHcCchheeeecccccCCCc-ceEEEEccCC---CcccccCcccCCcccccc--ccCCcCc---hhhhhh
Confidence 237999999999999555 9999999721 122223333332221110 0000000 001111
Q ss_pred HHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCc---eeEEEEEec---CCc-chhhhhhHHH-----
Q psy852 648 WFVIRTY--GLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVR---LGLVCFRLR---SEN-NLIADQNNRK----- 712 (891)
Q Consensus 648 W~~L~~l--G~~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~---~~iV~Fr~~---~~~-~~~~d~ln~~----- 712 (891)
=.+.+.. ....+..+++ ++...+..++.. .++..+.+.+. .+.++|.+. +.. ..+.+.....
T Consensus 291 gsA~e~~~~~~~~~~~~~~---~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~ 367 (428)
T KOG1549|consen 291 GSAAEFVNKEMAYDEAIIK---RLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSAC 367 (428)
T ss_pred HHHHHHHHhhcchhHHHHH---HHHHHHHHHHhhhCchhhccCCcccccccceeeecccccCcchhhhhhhhhhcccchh
Confidence 1222222 2223333333 366666666643 56666655432 256666665 110 0111111111
Q ss_pred ------HHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 713 ------LLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 713 ------L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
....|...|. .....+..+ |+++.+|+++|++++++.+++.+.
T Consensus 368 ~~~~~epsy~l~~~G~-----~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~ 417 (428)
T KOG1549|consen 368 TSASLEPSYVLRAIGV-----DEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVS 417 (428)
T ss_pred hcCCCCcchhhhhcCc-----chhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHH
Confidence 1111111121 112234456 999999999999999999998874
|
|
| >KOG0630|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-13 Score=149.59 Aligned_cols=318 Identities=16% Similarity=0.146 Sum_probs=212.0
Q ss_pred ccceEEEecccchHHHHH-HHHHcCce---EEEecC-CC---CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccchhh-
Q psy852 504 LSKLMAYCSKEAHSCVEK-AAMMAFVR---LKILEP-DD---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCYR- 574 (891)
Q Consensus 504 ~~~~vI~~S~~aH~Sv~K-aa~l~gv~---v~~Vp~-d~---~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~- 574 (891)
...|++|+|+.-|.-... +|+-+|+. +.+++- |. .|+||...+++.|++|.+.|+.|+++++..|++.|.+
T Consensus 229 ~aaPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~Gqn 308 (838)
T KOG0630|consen 229 LAAPTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQN 308 (838)
T ss_pred hcCceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcch
Confidence 468999999999986655 45656653 333332 32 3699999999999999999999999999999998631
Q ss_pred ------------------hhcC------------------CCCccEEEEcCcccCCcccccEEEEEeCCccc-hhhhccC
Q psy852 575 ------------------KSQG------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKL-TSALVVD 617 (891)
Q Consensus 575 ------------------~ldG------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L-~~~l~~~ 617 (891)
|..| .+..||++++.--||++|-..=+++-|.-+.. ..+|..+
T Consensus 309 Dmi~kildi~eahakfWLHasGhaiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg~aaSafesd 388 (838)
T KOG0630|consen 309 DMILKILDICEAHAKFWLHASGHAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEGSAASAFESD 388 (838)
T ss_pred HHHHHHHHHHHHhhheeEeeccchhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeecccccccchhcccC
Confidence 2222 25579999999999999987777776643211 0111111
Q ss_pred CCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--------
Q psy852 618 PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-------- 689 (891)
Q Consensus 618 ~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-------- 689 (891)
.-.+|+..+|++|.+++++|...+.++++..+.+.+-+.+.+.+++++++++..
T Consensus 389 ------------------pi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig~dn~aelaar 450 (838)
T KOG0630|consen 389 ------------------PILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIGHDNGAELAAR 450 (838)
T ss_pred ------------------hHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEeccCCHHHHHHH
Confidence 123788999999999999999999999999999999999999999999998621
Q ss_pred -----------------ceeEEEEEecCCc--------------------------------chhhhhhHHHHHHHHHhC
Q psy852 690 -----------------RLGLVCFRLRSEN--------------------------------NLIADQNNRKLLEDINAS 720 (891)
Q Consensus 690 -----------------~~~iV~Fr~~~~~--------------------------------~~~~d~ln~~L~~~L~~~ 720 (891)
..++|.+.+.+.. .++.|.+|.+|.+.|..+
T Consensus 451 l~dn~~sPfdvqalfdaaaPtVai~~~~~tsIk~a~q~hkaaaaaaddedA~aiaeke~~deaeY~D~LNaWL~d~Llpd 530 (838)
T KOG0630|consen 451 LSDNIFSPFDVQALFDAAAPTVAIFFDGSTSIKLAGQGHKAAAAAADDEDAEAIAEKEKIDEAEYFDRLNAWLGDGLLPD 530 (838)
T ss_pred HhhccCCcchHhhhhcccCCeEEEEecCceeeeccccccHHHHhhccccchhhcchhhhcchHHHHHHHHHHHhcccccC
Confidence 1256666654431 123455555655555443
Q ss_pred Cc-EEEeeccccCCe--EE-EEec------CCCCHHHHHHHHHHHHHHHHHHHHhhhccCccc-----------ccCCCc
Q psy852 721 GR-LHMVPASQEQND--EV-FELQ------ERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLI-----------ADHPLQ 779 (891)
Q Consensus 721 G~-~~~s~s~~~g~~--~l-~sv~------~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~-----------~~~~~~ 779 (891)
-. +-+......|.+ .+ ||.- ....-+.+++|+..|+....+++.+++++..|+ +--+.|
T Consensus 531 ~~~f~fdtIE~~gn~GiafRfCPLEhgaae~pphidhlerFaqkLea~m~IleaTi~hKakF~eLkd~~~sL~LlPi~eW 610 (838)
T KOG0630|consen 531 CLNFDFDTIEHGGNHGIAFRFCPLEHGAAEQPPHIDHLERFAQKLEAHMDILEATIKHKAKFIELKDCFDSLRLLPIPEW 610 (838)
T ss_pred CCCCCceeeecCCccceeEEecccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceEEeecccc
Confidence 11 001111222222 23 6621 135678999999999999999999999999884 122359
Q ss_pred ccceEEeecccc-----hhhhhhhhHHHHHHHHhhccccCCcccHHHHHhhhcccc------cccceEEEEeccCCccc
Q psy852 780 LGLVCFRLRSEN-----NVIADQNNRKLLEDINASGRLHMVPASFELQERKRKDDL------AYKRSFFVRMVSDPKIY 847 (891)
Q Consensus 780 ~gl~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 847 (891)
.|++.|||-+.. ++.-++..++++.++| -+..++.++....+. .---|.=.+||||-|-.
T Consensus 611 AGiGaV~fiPsivkE~~~e~~nDiaKqeinhLN--------idLVeaLKStDaAFS~Gd~Tr~Gl~CVkFGMlsd~kdl 681 (838)
T KOG0630|consen 611 AGIGAVCFIPSIVKEGNEEDLNDIAKQEINHLN--------IDLVEALKSTDAAFSLGDCTRDGLICVKFGMLSDEKDL 681 (838)
T ss_pred ccccceEecccccccCCHhHhhHHHHHHHhhcc--------HHHHHHHhhhhhhcccCCccccceeEEEeccccchhhH
Confidence 999999996522 2222223334444444 223334444433332 22235556899998753
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=154.63 Aligned_cols=272 Identities=13% Similarity=0.103 Sum_probs=182.4
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----HHc
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMA 526 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~l~ 526 (891)
.+++.+...+.-+|+ +++++|+++..++...+..+. +...|+++...|++...++ ...
T Consensus 51 ~la~~lg~~~~~~v~--~~~~~t~a~~~~~~~l~~~~~----------------~g~~vl~~~~~~~s~~~~~~~~~~~~ 112 (371)
T PF00266_consen 51 ALAKLLGAPPDEEVV--FTSNGTEALNAVASSLLNPLK----------------PGDEVLVTSNEHPSNRYPWEEIAKRK 112 (371)
T ss_dssp HHHHHHTSSTTEEEE--EESSHHHHHHHHHHHHHHHGT----------------TTCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCccccccc--cccccchhhhhhhhccccccc----------------cccccccccccccccccccccccccc
Confidence 566666665535777 778889888888777655421 2336899999999888554 346
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC------------C
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI------------E 580 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi------------~ 580 (891)
|.+++.+|.+.++.+|+++++++|++++. .+ ...+....|+.. |++ .+|+. -
T Consensus 113 g~~v~~i~~~~~~~~~~~~~~~~l~~~~~--lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~ 190 (371)
T PF00266_consen 113 GAEVRVIPADPGGSLDLEDLEEALNPDTR--LVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDEL 190 (371)
T ss_dssp TEEEEEEEEGTTSSCSHHHHHHHHHTTES--EEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTT
T ss_pred hhhhccccccccchhhhhhhhhhhccccc--eEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccccccc
Confidence 89999999999999999999999975432 11 111223455544 444 23432 3
Q ss_pred CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCc--cccCC--CCCccccCCccc-cccccc-chHHHHHHHHH
Q psy852 581 YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLY--LQHGH--EGAIDYRHWGIP-LSRRFR-SLKLWFVIRTY 654 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Y--l~~~~--e~~~~~~~~ti~-~SRr~~-aL~lW~~L~~l 654 (891)
++|.+.+++|| +++|.|+|++++|++. +...-.....+ ..... +..+....+.++ ++.... .+.+..+++.+
T Consensus 191 ~~D~~~~s~~K-l~gp~G~g~l~v~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~ 268 (371)
T PF00266_consen 191 GADFLVFSSHK-LGGPPGLGFLYVRPEA-IERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLL 268 (371)
T ss_dssp TESEEEEESTS-TTSSSTEEEEEEEHHH-HHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeecccc-cCCCCchhhheehhhh-hhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhh
Confidence 58999999999 8889999999999862 22110111111 10000 000000111111 122222 34667788888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC----CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND----VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~----~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
...|++++.++..++++++.+.|+++++++++++ ...++++|.+.+. ..+.+.+.|.++|+....+..+
T Consensus 269 ~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~~~I~~~~G~~~ 341 (371)
T PF00266_consen 269 EEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-------DADDVVKYLEERGIAVSTGSAC 341 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-------SHHHHHHHHHHHTEEEEESTTT
T ss_pred hccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-------CHHHHHHHHhhcCEEEeccCcc
Confidence 8889999999999999999999999999999773 2358999999654 4578888998888887665544
Q ss_pred c--------CCeEE-EEecCCCCHHHHHHH
Q psy852 731 E--------QNDEV-FELQERKRKDDLAYK 751 (891)
Q Consensus 731 ~--------g~~~l-~sv~~~tT~edId~l 751 (891)
. -...+ +|+++++|++|||++
T Consensus 342 ~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 342 AGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp CHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred cHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 3 23567 999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=160.09 Aligned_cols=162 Identities=11% Similarity=0.048 Sum_probs=111.1
Q ss_pred CCCccccccCCCCCCHHHHHHHH------HHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q psy852 15 WQHPRFHAYFPSGNSYPSVLADM------LSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATT 88 (891)
Q Consensus 15 ~~~p~~~~~~~~~~~~~~~~~~~------l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~t 88 (891)
..|+++++.-..+...|..+... ++. +|++.. +.++...+.+.+...++++++|.+... +
T Consensus 67 ~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~--~~~~g~~~~~~e~~~~la~l~g~~~~~--------v--- 132 (447)
T PRK00451 67 EEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQP--EISQGTLQAIFEYQTMICELTGMDVAN--------A--- 132 (447)
T ss_pred CcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCC--ccchHHHHHHHHHHHHHHHHhCCCcce--------E---
Confidence 34788887533333333333333 223 444333 335556777778888999999997542 1
Q ss_pred CCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH----cCC
Q psy852 89 PNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM----AFV 164 (891)
Q Consensus 89 p~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~----~~~ 164 (891)
..++||+. ++..+.+++... ++..|+++..+|.+..+++.. .|.
T Consensus 133 ------------------~~~~g~t~--~~~~~~~a~~~~------------~g~~Vlv~~~~~~~~~~~~~~~~~~~G~ 180 (447)
T PRK00451 133 ------------------SMYDGATA--LAEAALMAVRIT------------KRKKVLVSGAVHPEYREVLKTYLKGQGI 180 (447)
T ss_pred ------------------EecCcHHH--HHHHHHHHHHhc------------CCCEEEEeCccCHHHHHHHHHHHHhCCc
Confidence 13467753 333343444311 122488899999999988743 578
Q ss_pred eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceee
Q psy852 165 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHV 230 (891)
Q Consensus 165 ~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHv 230 (891)
+++.|++|++ ++|+++|++.+.+++ .+|+++.. |.+|.++|+++|+++|+++|+|+++
T Consensus 181 ~~~~v~~~~~-~~d~~~l~~~i~~~t------~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv 238 (447)
T PRK00451 181 EVVEVPYEDG-VTDLEALEAAVDDDT------AAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIV 238 (447)
T ss_pred EEEEecCCCC-CCCHHHHHHhcCCCe------EEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEE
Confidence 9999999988 999999999986543 46677766 7799999999999999999988877
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=148.90 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=111.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCCCCc-ccc--ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCIGFS-WAA--SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~-~~~--~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
..++-...+-..|.++.+.....-..+... +.. ++...++...+.+++++++|.+.+.. .
T Consensus 23 ~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v--------~--------- 85 (398)
T cd00613 23 SFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANA--------S--------- 85 (398)
T ss_pred ccccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccce--------e---------
Confidence 344544556666666666554440111111 111 45566888999999999999864321 1
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcC----CeEEEEec
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF----VRLKILEP 171 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~----~~v~~V~~ 171 (891)
++.+|+.+.+..+..+ +...+ +...|+++...|.+...++...+ .+++.|++
T Consensus 86 ------------~~~~g~~~~~~~~~~~-~~~~~-----------~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~ 141 (398)
T cd00613 86 ------------LQDEATAAAEAAGLAA-IRAYH-----------KRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPS 141 (398)
T ss_pred ------------ccCchHHHHHHHHHHH-Hhccc-----------CCCEEEEcCccCcchHHHHHHhcccCCcEEEEecc
Confidence 1223333333333322 22110 12247888899999988886544 78999999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH-HHHHHHHHHcCCceeeecccc
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL-AEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl-~~I~~i~~~~~~~lHvDaA~G 235 (891)
++++.+|+++|++.+.++ +.+|+++..+ .+|.++|+ ++|+++|+++|+++++|++++
T Consensus 142 ~~~~~~d~~~l~~~i~~~------t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~ 199 (398)
T cd00613 142 DEGGTVDLEALKEEVSEE------VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNL 199 (398)
T ss_pred CCCCCcCHHHHHHhcCCC------eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccc
Confidence 888899999999988654 3467777776 57999985 999999999999888888874
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-13 Score=153.97 Aligned_cols=272 Identities=12% Similarity=0.107 Sum_probs=172.2
Q ss_pred cccCCCCC-CHHHHHHHHHHHh---c--CCCCCcccc-ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 21 HAYFPSGN-SYPSVLADMLSDA---I--GCIGFSWAA-SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~l~~~---~--n~~~~~~~~-~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
+.-.++-+ ..|.++..+.+.+ + ++.+..+.. ......+|..+.+.++++||.+.... +||
T Consensus 37 l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~--------~~~----- 103 (452)
T PTZ00094 37 LELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEW--------GVN----- 103 (452)
T ss_pred eeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccc--------eee-----
Confidence 33334433 3455555555444 2 333334443 45567888889999999999865421 011
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH-Hc---------C
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-MA---------F 163 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~~---------~ 163 (891)
...++|+..+++.+..+.+ +.-.|+++..+|.+....+. +. .
T Consensus 104 -------------~~~~sgt~an~~v~~al~~---------------~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~ 155 (452)
T PTZ00094 104 -------------VQPYSGSPANFAVYTALLQ---------------PHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIY 155 (452)
T ss_pred -------------cCCCchHHHHHHHHHHhcC---------------CCCEEEecccccCCcccccccccccccccceee
Confidence 1125777555444444421 12248888999988765441 11 1
Q ss_pred CeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCC
Q psy852 164 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243 (891)
Q Consensus 164 ~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~ 243 (891)
.++..+++|.+|.+|+++|++.+++.. |-+|++ +.+++|.+.|+++|+++|+++|+++|||+|++-....
T Consensus 156 ~~~~~~~~~~~g~id~~~L~~~l~~~~-----~~lvi~--~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~--- 225 (452)
T PTZ00094 156 FESLPYQVNEKGLIDYDKLEELAKAFR-----PKLIIA--GASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVA--- 225 (452)
T ss_pred eeeeecccCCCCCcCHHHHHHHHHHhC-----CCEEEE--eCCCCCCccCHHHHHHHHHHcCCEEEEeccchhcccc---
Confidence 244566678889999999999997532 334443 3567999999999999999999999999998332210
Q ss_pred CCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccc
Q psy852 244 FRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHI 323 (891)
Q Consensus 244 ~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (891)
.
T Consensus 226 ----------~--------------------------------------------------------------------- 226 (452)
T PTZ00094 226 ----------A--------------------------------------------------------------------- 226 (452)
T ss_pred ----------C---------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEecccc--chhhcccCccccC
Q psy852 324 QSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYK--LTSALVVDPLYLQ 401 (891)
Q Consensus 324 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~--~~~~~~~~~~y~~ 401 (891)
|+ .+ ..+..+|.+++++|||+++|.+ |++++++... +.. ..++. +.
T Consensus 227 --------------~~--------~~------~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~--~~~~~-~~ 274 (452)
T PTZ00094 227 --------------GV--------LP------SPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIEN--KINEA-VF 274 (452)
T ss_pred --------------CC--------CC------CCCCCCcEEEcCCccCCCCCCc-eEEEEecccchHHHH--hhccc-cC
Confidence 00 00 0112479999999999999997 8888875421 111 00100 00
Q ss_pred CCCCCcccccccccCCCCC-hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 402 HGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 402 ~~~~~~~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
.++.|+-. ...+++-.+++.+-..++.++.++..++++++.+.|.+. +++++.
T Consensus 275 -----------p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~ 328 (452)
T PTZ00094 275 -----------PGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVT 328 (452)
T ss_pred -----------CCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEec
Confidence 01223322 245677788888877889999999999999999999774 788774
|
|
| >KOG0630|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-12 Score=140.88 Aligned_cols=200 Identities=20% Similarity=0.311 Sum_probs=149.5
Q ss_pred cCCeEEEecCCCChHHHHH-HHHcCCeEEEEe--c--CC---CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 140 LSKLMAYCSKEAHSCVEKA-AMMAFVRLKILE--P--DD---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 140 ~~~~~v~~S~~~H~Sv~ka-a~~~~~~v~~V~--~--d~---~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
+..+++|+|+..|.-...- |+..|+....|. . |. +|+||...|++.|+++..+|+.|.++++..|++.+|..
T Consensus 229 ~aaPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~Gqn 308 (838)
T KOG0630|consen 229 LAAPTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQN 308 (838)
T ss_pred hcCceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcch
Confidence 5678999999999877654 454443222222 2 22 46999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHcC-CceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhc
Q psy852 212 DNLAEIGPVAKEFD-VWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLK 290 (891)
Q Consensus 212 Dpl~~I~~i~~~~~-~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 290 (891)
|.|-.|.++|+++. .|+|.-|
T Consensus 309 Dmi~kildi~eahakfWLHasG---------------------------------------------------------- 330 (838)
T KOG0630|consen 309 DMILKILDICEAHAKFWLHASG---------------------------------------------------------- 330 (838)
T ss_pred HHHHHHHHHHHHhhheeEeecc----------------------------------------------------------
Confidence 99999999999985 5555544
Q ss_pred ccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCC-CcccEEEEeCC
Q psy852 291 KIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGI-EYADSFNVNVN 369 (891)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi-~~~ds~~~~~H 369 (891)
++...+.|.+-...+-.+ +..||++++.-
T Consensus 331 --------------------------------------------------haiAALt~aepnnil~HV~eqldSMal~ia 360 (838)
T KOG0630|consen 331 --------------------------------------------------HAIAALTCAEPNNILGHVEEQLDSMALNIA 360 (838)
T ss_pred --------------------------------------------------chhhheeecCcccchhHHHHHHhhccchhH
Confidence 111122222211111111 35799999999
Q ss_pred CcCCccCCceEEEEecc--ccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHH
Q psy852 370 KWLLTAFDSSCLWVADR--YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447 (891)
Q Consensus 370 K~~~~p~~~g~~~~r~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~le 447 (891)
-|++.|-..=+++-|-- +.+ ++|..+| -.+|+..+|.+|.+++++|...+.+++.+...
T Consensus 361 lWLGiPSaPiV~LHRPleg~aa-Safesdp------------------i~rekLdaLp~Wta~q~LggKaIadmienAFl 421 (838)
T KOG0630|consen 361 LWLGIPSAPIVLLHRPLEGSAA-SAFESDP------------------ILREKLDALPLWTALQALGGKAIADMIENAFL 421 (838)
T ss_pred HHhCCCCCceEEeecccccccc-hhcccCh------------------HHHHhhccchHHHHHHHhcccHHHHHHHHHHH
Confidence 99999988777776632 111 1222222 23567889999999999999999999999999
Q ss_pred HHHHHHHhhccCCcccccc
Q psy852 448 LAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~ 466 (891)
+++-+.+.+.+++++++++
T Consensus 422 l~kilfe~aSa~~eiemig 440 (838)
T KOG0630|consen 422 LCKILFEGASACEEIEMIG 440 (838)
T ss_pred HHHHHHHHhhcCCceeEec
Confidence 9999999999999999996
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-12 Score=143.52 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=78.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCC--cccHHHHHHHHHhhhhc-CCcceEEEeecccCccccccCHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN--SLRGATLRQVMQQDETM-GYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g--~id~~~L~~~l~~~~~~-g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
.|+++..+|+++..++...|.+++.|++|.++ .+|+++|++.+++..++ +..+.+|+++..+|.+|.++|+++|+++
T Consensus 85 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~ 164 (361)
T cd06452 85 WVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKV 164 (361)
T ss_pred EEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHH
Confidence 47888899999998887778899999998765 99999999999753221 2236688889999999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++|+|+||+
T Consensus 165 ~~~~~~~vivD~a~~ 179 (361)
T cd06452 165 CHEYGVPLLLNGAYT 179 (361)
T ss_pred HHHcCCeEEEECCcc
Confidence 999999999999983
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-12 Score=149.43 Aligned_cols=251 Identities=12% Similarity=0.123 Sum_probs=159.7
Q ss_pred CCCCcc-hhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC---CCCCCcCH
Q psy852 468 VRSSAS-ECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRG 543 (891)
Q Consensus 468 itsggs-ean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~---d~~G~mD~ 543 (891)
.++++| .++.+|+.++|.+.. .++. |+++..+|+|+.||+.+.|++++.||+ ++++.||+
T Consensus 128 ~v~~~Tg~al~laL~alr~~~~---------------~gd~-VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~ 191 (444)
T TIGR03531 128 VVPLATGMSLSLCLSALRHKRP---------------KAKY-VIWPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDV 191 (444)
T ss_pred EECCHHHHHHHHHHHHcCCcCC---------------CCCE-EEEECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCH
Confidence 345677 788888888764210 1233 445556799999999999999999985 46689999
Q ss_pred HHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----hh----------------cCCC--CccEEEE
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----KS----------------QGIE--YADSFNV 587 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~l----------------dGi~--~aDSIs~ 587 (891)
++|+++|++... ..+++|+++.+|+. |.+ ++ .|.+ ++|++++
T Consensus 192 e~Le~aIt~~~~--kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~ 269 (444)
T TIGR03531 192 EDIERAIEEIGP--DNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVS 269 (444)
T ss_pred HHHHHHHHhccC--CCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEE
Confidence 999999985321 23555555554431 332 11 2332 5899999
Q ss_pred cCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHH
Q psy852 588 NVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHC 667 (891)
Q Consensus 588 d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~ 667 (891)
|+|||+.+|.++|++++++++.+.. +.. .|... .....++.+|++++.+|.+++++++++..
T Consensus 270 s~hK~l~~pg~Gg~I~~~d~el~~~-i~~--~y~g~---------------~~~s~~~~~~~~ll~~G~~g~~~li~~~~ 331 (444)
T TIGR03531 270 STDKNFMVPVGGAIIYSFDENFIQE-ISK--SYPGR---------------ASASPSLDVLITLLSLGSKGYLELLKERK 331 (444)
T ss_pred eCccCCCCCCCEEEEEECCHHHHHH-HHH--hccCC---------------CCChHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999999999988866543 221 12110 01134688999999999999999999999
Q ss_pred HHHHHHHHHhccCC---CcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHHhC---CcEEEeecc--ccCC-e---
Q psy852 668 ELAKLFEGKVRRDP---RFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDINAS---GRLHMVPAS--QEQN-D--- 734 (891)
Q Consensus 668 ~lA~~L~~~L~~~~---~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~---G~~~~s~s~--~~g~-~--- 734 (891)
++++++.+.|+++. +-+++..|... -+++.+.... +.....+...|-.+ |--++.+.. .-++ +
T Consensus 332 ~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~----~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~ 407 (444)
T TIGR03531 332 EMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK----GKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKG 407 (444)
T ss_pred HHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc----ccCHHHHHHHHHhCCCCCceeecCCCceEECCEEeec
Confidence 99999999998752 34555433221 1222222110 22344555556443 322222221 0011 0
Q ss_pred -----------EE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 735 -----------EV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 735 -----------~l-~sv~~~tT~edId~li~~L~ei 758 (891)
++ +...-.++++|||.+++.|++.
T Consensus 408 ~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 408 YGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred ccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 11 2222358999999999888763
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-12 Score=154.49 Aligned_cols=282 Identities=14% Similarity=0.074 Sum_probs=177.8
Q ss_pred CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCC
Q psy852 460 PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN 539 (891)
Q Consensus 460 ~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G 539 (891)
-|.+...-...+|+.+++.++.+.|.....+.. ..+-+|++|..+|.+.--.+.+.|++++.||+|++|
T Consensus 556 tGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge-----------~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G 624 (954)
T PRK12566 556 TGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQ-----------SQRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDG 624 (954)
T ss_pred HCCCeEeecCCchHHHHHHHHHHHHHHHHhcCC-----------CCCCEEEecccccccCHHHHHHCCCEEEEeccCCCC
Confidence 344555323346678888899998875543211 235579999999977766677889999999999999
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEE-E-ecCCccc---------hhh-----hhcC-------------CCCccEEEEcCc
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFV-S-TTLGTTS---------CYR-----KSQG-------------IEYADSFNVNVN 590 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~V-v-ataGTT~---------c~~-----~ldG-------------i~~aDSIs~d~H 590 (891)
.+|+++|+++|++... ...-+++ . ++.|... |++ ++|| --+||.+.+++|
T Consensus 625 ~iDle~L~a~I~~~~~-~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~H 703 (954)
T PRK12566 625 NVDLDDLKAKAAAAGD-RLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLH 703 (954)
T ss_pred CcCHHHHHHHhhccCC-CEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCC
Confidence 9999999999984221 1111111 1 2334322 222 2333 245899999999
Q ss_pred ccCCcccccEEEEEeC---CccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHhhHHHHHHHH
Q psy852 591 KWLLTAFDSSCLWVAD---RYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRH 666 (891)
Q Consensus 591 K~L~~P~g~G~llvR~---~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~G~~~~i~~~ 666 (891)
||+++|.|.|..+++. ++.|.+.+...+. ... +......+.....+.-. .-++..|..++.+|.+ +.+.-..+
T Consensus 704 Ktf~~P~G~GGP~vG~iav~~~L~pfLp~~P~-~d~-~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~a 780 (954)
T PRK12566 704 KTFCIPHGGGGPGMGPIGVRAHLAPFVANHPV-VPV-EGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVA 780 (954)
T ss_pred cccCcCccCCCCccchhhhhhhhhhhccCCCC-cCC-CCCCCCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHH
Confidence 9999999999998886 3333332221111 000 00000101111111111 1146789999999999 88888889
Q ss_pred HHHHHHHHHHhccCCCcEEe-CC---C---ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EE
Q psy852 667 CELAKLFEGKVRRDPRFEIS-ND---V---RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FE 738 (891)
Q Consensus 667 ~~lA~~L~~~L~~~~~~eil-~~---~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~s 738 (891)
+.+|+|+.++|.+. +++. .+ + ++.+.++.+++. .......+.++|.+.|+...+- .......+ ++
T Consensus 781 ilnAnYla~rL~~~--~~v~~~~~~~~~~hEfii~~~~l~~~----~g~~~~dvakRL~d~Gihapt~-~fPv~~~LmIe 853 (954)
T PRK12566 781 ILSANYLANQLGGA--FPVLYRGRNERVAHECILDLRPLKAQ----TGISEEDVAKRLMDYGFHAPTM-SFPVPGTLMVE 853 (954)
T ss_pred HHHHHHHHHHhHhh--CCCCcCCCCCCeeeEEEEEccccccc----cCCCHHHHHHHHHHCCcEEeEE-eeccCCEEEEE
Confidence 99999999999873 4443 22 1 223333334321 0123366888888888764332 23345566 99
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 739 LQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ei~~~~~ 763 (891)
++.+.+++|||+++++++++.....
T Consensus 854 pTE~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 854 PTESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred eeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886443
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-12 Score=141.90 Aligned_cols=252 Identities=10% Similarity=0.008 Sum_probs=161.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC
Q psy852 53 PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP 132 (891)
Q Consensus 53 p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~ 132 (891)
+....+-..+.+.+++++|.++... .+ .+++|||...+..+..+.+
T Consensus 31 ~~~~~~~~~~r~~la~l~~~~~~~~-------~i--------------------~~t~~~t~al~~~~~~l~~------- 76 (363)
T TIGR02326 31 SDYNIVVEQIRQQLLALATAEEGYT-------SV--------------------LLQGSGTFAVEAVIGSAVP------- 76 (363)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCce-------EE--------------------EEcCCCHHHHHHHHHhcCC-------
Confidence 5566677778999999999975310 00 1356776443333333211
Q ss_pred ccccccccCCeEEEecCCCChHH-HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 133 FVDEGVLLSKLMAYCSKEAHSCV-EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 133 ~~~~g~~~~~~~v~~S~~~H~Sv-~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
.++-+++++...|.+. .+.+...+.+++.|+++.++.+|+++|++.+.+..+ +.+|+++...|.+|.+
T Consensus 77 -------~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG~~ 145 (363)
T TIGR02326 77 -------KDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPA----ITHIALVHCETTTGIL 145 (363)
T ss_pred -------CCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCC----ccEEEEEeecCCcccc
Confidence 0223456666666663 455566678999999999999999999999876421 2367888889999999
Q ss_pred cCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcc
Q psy852 212 DNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKK 291 (891)
Q Consensus 212 Dpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 291 (891)
.|+++|+++|+++|++++||++++- ..
T Consensus 146 ~~i~~I~~l~~~~g~~livD~~~~~-g~---------------------------------------------------- 172 (363)
T TIGR02326 146 NPIEAVAKLAHRHGKVTIVDAMSSF-GG---------------------------------------------------- 172 (363)
T ss_pred CcHHHHHHHHHHcCCEEEEEccccc-cC----------------------------------------------------
Confidence 9999999999999999999987720 00
Q ss_pred cCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCc
Q psy852 292 IHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKW 371 (891)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~ 371 (891)
..+ . ++.+ .+|.+..++|||
T Consensus 173 -----------------------------------------~~~--------------~----~~~~-~~D~~~~s~~K~ 192 (363)
T TIGR02326 173 -----------------------------------------IPI--------------D----IAEL-HIDYLISSANKC 192 (363)
T ss_pred -----------------------------------------ccc--------------c----hhhc-CccEEEecCccc
Confidence 000 0 0001 368999999999
Q ss_pred CCccCCceEEEEeccccchhhcc-cCccccCCCC---CCcccccccccCCCCC-hhHHHHHHHHHHhcHH-HHHHHHHHH
Q psy852 372 LLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGH---EGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS-GLQKYIRRH 445 (891)
Q Consensus 372 ~~~p~~~g~~~~r~~~~~~~~~~-~~~~y~~~~~---~~~~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~-G~~~ii~~~ 445 (891)
+++|.+.|+++++++. +..... ..+.|+.... ......+.+.+ +.+ ...+++..+++.+-.+ |+.++.++.
T Consensus 193 l~~p~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--t~~~~~~~al~~al~~l~~~g~~~~~~~~~ 269 (363)
T TIGR02326 193 IQGVPGFGFVIARQAE-LAACKGNARSLSLDLYDQWRCMEDNHGKWRF--TSPTHVVHAFAQALLELEKEGGVAARHQRY 269 (363)
T ss_pred cccCCcceEEEECHHH-HHHhhcCCCceeecHHHHHHHHhccCCCCCC--CCcHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 9999999999998652 111110 1111110000 00000000111 112 2345677788887666 588899999
Q ss_pred HHHHHHHHHhhccCCcccccc
Q psy852 446 CELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~ 466 (891)
.++++++.+.|.+. +++++.
T Consensus 270 ~~~~~~l~~~L~~~-g~~~~~ 289 (363)
T TIGR02326 270 QQNQKTLVAGMRAL-GFEPLL 289 (363)
T ss_pred HHHHHHHHHHHHHc-CCeecc
Confidence 99999999999775 667664
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-11 Score=139.99 Aligned_cols=265 Identities=15% Similarity=0.158 Sum_probs=162.5
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH---cC
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AF 527 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l---~g 527 (891)
.+++.+...+. +++ +++|+|+++..++.+......+ +...|+++..+|+++..++.. .|
T Consensus 57 ~ia~~~g~~~~-~v~--~~~g~t~al~~~l~~l~~~~~~---------------~gd~Vi~~~~~~~s~~~~~~~~~~~g 118 (404)
T PRK14012 57 QIADLIGADPR-EIV--FTSGATESDNLAIKGAAHFYQK---------------KGKHIITSKTEHKAVLDTCRQLEREG 118 (404)
T ss_pred HHHHHcCcCcC-eEE--EeCCHHHHHHHHHHHHHHhhcC---------------CCCEEEEecCccHHHHHHHHHHHhCC
Confidence 56666655443 455 6789999999988776432211 123588899999999877643 48
Q ss_pred ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh-----hhcCC------------
Q psy852 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR-----KSQGI------------ 579 (891)
Q Consensus 528 v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~-----~ldGi------------ 579 (891)
++++.|++|++|.+|+++|+++|++++. .+++. +..|... |++ ++|+.
T Consensus 119 ~~~~~v~~~~~g~~d~~~l~~~i~~~t~----lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~ 194 (404)
T PRK14012 119 FEVTYLDPQSNGIIDLEKLEAAMRDDTI----LVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSK 194 (404)
T ss_pred CEEEEEccCCCCcCCHHHHHHhcCCCCE----EEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCccc
Confidence 8999999999999999999999976432 12222 2235544 433 12321
Q ss_pred CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc-cccccc-chHHHHHHHHHHHh
Q psy852 580 EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP-LSRRFR-SLKLWFVIRTYGLS 657 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~-~SRr~~-aL~lW~~L~~lG~~ 657 (891)
..+|.+++++||+ ++|.|+|+++++++.... ..+.+...+.+. .+. ++.... .+.+-.++..+ ..
T Consensus 195 ~~~D~~~~s~~K~-~gp~g~G~l~~~~~~~~~----~~~~~~g~~~~~-------~~~~gt~~~~~~~~l~~al~~~-~~ 261 (404)
T PRK14012 195 LKVDLMSFSAHKI-YGPKGIGALYVRRKPRVR----LEAQMHGGGHER-------GMRSGTLPTHQIVGMGEAARIA-KE 261 (404)
T ss_pred CCCCEEEEehhhc-cCCCceEEEEEecCCCCC----CCceecCCCccC-------CccCCCcCHHHHHHHHHHHHHH-Hh
Confidence 2489999999994 568899999999764221 111111100000 000 011110 11111233222 34
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc--
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ-- 730 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~-- 730 (891)
++.+..++..++++++.+.|++++++.+..+. ....++|.+.+. ..+...|. ++...++..+
T Consensus 262 ~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~--~~~i~~g~~~~~ 330 (404)
T PRK14012 262 EMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG---------ESLIMALK--DLAVSSGSACTS 330 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH---------HHHHHhCC--CeEEEchhhhCC
Confidence 56777888899999999999999988876432 122456665321 24455553 3322222111
Q ss_pred -----------------cCCeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 731 -----------------EQNDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 731 -----------------~g~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
.....+ +++++++|++|||+++++|++++..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~ 379 (404)
T PRK14012 331 ASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGK 379 (404)
T ss_pred CCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 112466 9999999999999999999998753
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-11 Score=139.08 Aligned_cols=109 Identities=8% Similarity=0.006 Sum_probs=79.5
Q ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-C--ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 648 WFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISND-V--RL-GLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 648 W~~L~~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~--~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
-.+|+.+-.. |++++.++..++++++.+.|++.++++++.+ + .. .+++|++++.+ ......+...|.++|+
T Consensus 258 ~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~----~~~~~~~~~~l~~~~i 333 (378)
T PRK03080 258 LDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ----AAVDAAAVAKLLRENG 333 (378)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCch----HHHHHHHHHHHHHcCC
Confidence 4577777777 8999999999999999999999988887642 2 23 58999986410 0234456667766776
Q ss_pred EEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 723 LHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 723 ~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+...+........+ +|++.++|++|||+++++|+++..
T Consensus 334 ~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~ 372 (378)
T PRK03080 334 AVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFE 372 (378)
T ss_pred eeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 64443222223456 999999999999999999998763
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-12 Score=145.24 Aligned_cols=254 Identities=13% Similarity=0.056 Sum_probs=166.7
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.++.+.++-.++.+++++++|.+.... + .++++|+...+.....+. +
T Consensus 36 ~~~~~~~~~~~~~~~l~~~~g~~~~~~--------v--------------------i~~~~gt~a~~~a~~~~~--~--- 82 (401)
T PLN02409 36 RSPAFPALTKELLEDVKYIFKTKSGTP--------F--------------------IFPTTGTGAWESALTNTL--S--- 82 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCE--------E--------------------EEeCCcHHHHHHHHHhcC--C---
Confidence 377888899999999999999864311 0 123455432211111111 1
Q ss_pred CCccccccccCCeEEEecCCCChHHH--HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVE--KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC 208 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~--kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~ 208 (891)
+.-.|+++...|++.. ..+...|.+++.|+.+.++.+|+++|++.++++.. ..+.+|++++.+|.|
T Consensus 83 ----------~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~--~~~k~v~~~~~~~~t 150 (401)
T PLN02409 83 ----------PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTN--HKIKAVCVVHNETST 150 (401)
T ss_pred ----------CCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcC--CCccEEEEEeecccc
Confidence 1223677778898763 44455678999999987777999999999986320 124588889999999
Q ss_pred ccccCHHHHHHH--HHHcCCceeeecccc-CCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHH
Q psy852 209 CSFDNLAEIGPV--AKEFDVWLHVDGAYA-GSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQA 285 (891)
Q Consensus 209 GavDpl~~I~~i--~~~~~~~lHvDaA~G-G~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (891)
|.+.|+++|.++ |+++|++++||++++ |...
T Consensus 151 G~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~---------------------------------------------- 184 (401)
T PLN02409 151 GVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALD---------------------------------------------- 184 (401)
T ss_pred cccCCHHHHHHHHhhhccCcEEEEEcccccCCcc----------------------------------------------
Confidence 999999999999 999998888888872 0000
Q ss_pred HhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEE
Q psy852 286 ISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFN 365 (891)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~ 365 (891)
+. ++.+ .+|.+.
T Consensus 185 -------------------------------------------------id------------------~~~~-~~D~~~ 196 (401)
T PLN02409 185 -------------------------------------------------FR------------------MDEW-GVDVAL 196 (401)
T ss_pred -------------------------------------------------cc------------------cccc-CccEEE
Confidence 00 0000 369999
Q ss_pred EeCCCcCCccCCceEEEEeccccchhhcc--cCccccCCCCCCccccccc-cc-CCCCCh-hHHHHHHHHHHhcHHHHHH
Q psy852 366 VNVNKWLLTAFDSSCLWVADRYKLTSALV--VDPLYLQHGHEGAIDYRHW-GI-PLSRRF-RSLKLWFVIRTYGLSGLQK 440 (891)
Q Consensus 366 ~~~HK~~~~p~~~g~~~~r~~~~~~~~~~--~~~~y~~~~~~~~~~~~~~-~~-~~sr~~-~~l~~w~~l~~~g~~G~~~ 440 (891)
.++|||+++|.+.|+++++++. +..... ..+.|..... ..++... +. .++-+. ..+++-.+++.+-..|+++
T Consensus 197 ~s~~K~l~~P~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~ 273 (401)
T PLN02409 197 TGSQKALSLPTGLGIVCASPKA-LEASKTAKSPRVFFDWAD--YLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLEN 273 (401)
T ss_pred EcCccccCcCCCcceeEECHHH-HHHHhcCCCCCeecCHHH--HHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999987652 211111 1222221000 0000000 00 112122 2346677788888889999
Q ss_pred HHHHHHHHHHHHHHhhccCCccccccC
Q psy852 441 YIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 441 ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
+.++..++++++.+.|.+. +++++.+
T Consensus 274 i~~~~~~l~~~l~~~L~~~-g~~~~~~ 299 (401)
T PLN02409 274 VIARHARLGEATRLAVEAW-GLKLCTK 299 (401)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCeeccC
Confidence 9999999999999999875 7888753
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=139.85 Aligned_cols=235 Identities=13% Similarity=0.052 Sum_probs=151.0
Q ss_pred EEEecccchHHHHHHHHHcC----ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc------------
Q psy852 508 MAYCSKEAHSCVEKAAMMAF----VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS------------ 571 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~g----v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~------------ 571 (891)
.|+++...|.+...++.+.+ .+++.+|.++++.+|+++|++++.+++ .++++...+++.
T Consensus 110 ~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t-----~~viv~~~~~~G~~~~~l~~i~~l 184 (398)
T cd00613 110 KVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV-----AALMVQYPNTLGVFEDLIKEIADI 184 (398)
T ss_pred EEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe-----EEEEEECCCCCceecchHHHHHHH
Confidence 58889999999988887665 899999998888999999999986532 222222222222
Q ss_pred hhhh-----hcC------------CCCccEEEEcCcccCCcccc-----cEEEEEeCCccchhhhccCCCcccc-CCC-C
Q psy852 572 CYRK-----SQG------------IEYADSFNVNVNKWLLTAFD-----SSCLWVADRYKLTSALVVDPLYLQH-GHE-G 627 (891)
Q Consensus 572 c~~~-----ldG------------i~~aDSIs~d~HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~~Yl~~-~~e-~ 627 (891)
|+++ +|+ ...+|+++.++|||+ .|+| +|++++++. .+ +.+.....+... ... .
T Consensus 185 a~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ 261 (398)
T cd00613 185 AHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKKE-LV-RFLPGRLVGVTKDAEGNR 261 (398)
T ss_pred HHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccC-CCCCCCCCceeEEEEhhh-hH-hhCCCCeeccccccCCCc
Confidence 4332 333 124799999999999 8864 557776653 22 222111001000 000 0
Q ss_pred Cc--cc-----------cCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEE
Q psy852 628 AI--DY-----------RHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLV 694 (891)
Q Consensus 628 ~~--~~-----------~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV 694 (891)
.+ ++ +...+...-...+...|..++.++.+|++++.++..+++++|.++|++++.......+..++|
T Consensus 262 ~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v 341 (398)
T cd00613 262 AFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEF 341 (398)
T ss_pred ceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEE
Confidence 00 00 000001111233457788888899999999999999999999999998866553334456778
Q ss_pred EEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 695 CFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 695 ~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
+|++.+.. +....++.+.|.++|+.... ....+...+ ++++.++|++|||+++++|
T Consensus 342 ~~~~~~~~----~~~~~~~~~~L~~~gi~~~~-~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 342 VLRLPPLY----GIRAEDLAKALIDGGFHAPT-MYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred EEEcCCcc----hHHHHHHHHhhhhcCccccc-cccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 88875310 12456788888888876322 112344567 9999999999999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=134.88 Aligned_cols=258 Identities=15% Similarity=0.130 Sum_probs=174.2
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH---
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM--- 524 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~--- 524 (891)
+.+++++.+.. ..++ +..+||.+|.++|.+.-. +.-.++|...+|........
T Consensus 40 ~e~~~ae~~g~---~a~~--Fv~sGT~aN~lal~~~~~-------------------~~~~vi~~~~aHi~~~E~Ga~~~ 95 (342)
T COG2008 40 LEQRIAELFGK---EAAL--FVPSGTQANQLALAAHCQ-------------------PGESVICHETAHIYTDECGAPEF 95 (342)
T ss_pred HHHHHHHHhCC---ceEE--EecCccHHHHHHHHHhcC-------------------CCCeEEEeccccceecccCcHHH
Confidence 34456666654 2445 778899999999887431 12249999999999888653
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhh-hcCCccEEEEec----CCccc-----------hhh-----hhcCC----
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDE-TMGYIPFFVSTT----LGTTS-----------CYR-----KSQGI---- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~-~~g~ip~~Vvat----aGTT~-----------c~~-----~ldGi---- 579 (891)
+.++..+.+...++|.|++++++..|..+. ..-..|+++.-+ .||.. |++ |+||.
T Consensus 96 ~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~n 175 (342)
T COG2008 96 FGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLAN 175 (342)
T ss_pred HcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHH
Confidence 345565666666899999999999988632 333446665432 24433 554 68872
Q ss_pred -------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchH
Q psy852 580 -------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLK 646 (891)
Q Consensus 580 -------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~ 646 (891)
.++||++|++-|.++.|. |++++-+.+..+++ .|.+.- .-++-|..+-|.
T Consensus 176 A~valg~~~~~~~~~~D~v~~~~tK~g~~~~--gAiv~gn~~~~~~a-----~~~rK~----------~Ggl~~k~r~la 238 (342)
T COG2008 176 ALVALGVALKTIKSYVDSVSFCLTKGGGAPV--GAIVFGNRDFAKRA-----RRWRKR----------AGGLMRKARFLA 238 (342)
T ss_pred HHHHcCCCHHHHHhhCCEEEEecccCCccee--eeEEEcCHHHHHHH-----HHHHHH----------hcccHhhhhHHH
Confidence 678999999999999998 77888887655432 111100 001223333222
Q ss_pred -HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE
Q psy852 647 -LWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHM 725 (891)
Q Consensus 647 -lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~ 725 (891)
+|.. ++..+-+....+|..++|++|++.|.+.+++++..+++.|+|-.+++.. ..+.|...|..+-
T Consensus 239 A~~~~--~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~-----------~i~~l~~~~~~~~ 305 (342)
T COG2008 239 AQGLY--ALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPES-----------AIEALRLAGALFY 305 (342)
T ss_pred HHHHH--HHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChH-----------HHHHHHhhchhhe
Confidence 2222 3344446667778888899999999999999999999999998888532 2256666665544
Q ss_pred eeccccCC-eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 726 VPASQEQN-DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 726 s~s~~~g~-~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+.-.... +.+ |++++.||++|||+++..++++.
T Consensus 306 ~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 306 RGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred eeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 33222222 456 99999999999999999998764
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=141.90 Aligned_cols=268 Identities=12% Similarity=0.070 Sum_probs=166.0
Q ss_pred HHHHhhccCCcccc-ccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH-H---
Q psy852 451 LFEGKVRRDPRFEI-SNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-M--- 525 (891)
Q Consensus 451 ~l~~~L~~~~~~eV-v~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~-l--- 525 (891)
.+++.+...+. ++ .+-..++|+++|+.++.+.- + +.-.|+++...|.+....+. +
T Consensus 88 ~~a~lf~a~~~-~~~~~~~~~sgt~an~~v~~al~----~---------------~gd~Ii~~~~ehg~~l~~~~~l~~~ 147 (452)
T PTZ00094 88 RALEAFGLDPE-EWGVNVQPYSGSPANFAVYTALL----Q---------------PHDRIMGLDLPSGGHLTHGFYTAKK 147 (452)
T ss_pred HHHHHhCCCcc-cceeecCCCchHHHHHHHHHHhc----C---------------CCCEEEecccccCCccccccccccc
Confidence 44444554333 22 22223788999999877641 0 12358888888877654432 1
Q ss_pred ------cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhh-----hhcC--------
Q psy852 526 ------AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYR-----KSQG-------- 578 (891)
Q Consensus 526 ------~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~-----~ldG-------- 578 (891)
.++++..+++|.+|.+|+++|++++++.. ....++.....|... |++ ++|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~--~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~ 225 (452)
T PTZ00094 148 KVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFR--PKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVA 225 (452)
T ss_pred ccccceeeeeeeecccCCCCCcCHHHHHHHHHHhC--CCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhcccc
Confidence 12345567788889999999999997532 112222223344433 433 1222
Q ss_pred -------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHH
Q psy852 579 -------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFV 650 (891)
Q Consensus 579 -------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~ 650 (891)
+.++|.+++++|||+++|.| |++++++.. .. .+.. .+... ..+ ++.++-. ...+.+..+
T Consensus 226 ~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~-~~-~l~~---~~~~~--~~p-----~~~G~~~~~~iaal~~a 292 (452)
T PTZ00094 226 AGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKV-KP-DIEN---KINEA--VFP-----GLQGGPHNHQIAAIAVQ 292 (452)
T ss_pred CCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEeccc-ch-HHHH---hhccc--cCC-----CCCCCchHHHHHHHHHH
Confidence 23589999999999999998 888887642 11 1110 00000 000 0111111 234556677
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC---CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee
Q psy852 651 IRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND---VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 651 L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~---~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~ 727 (891)
++.+...+++++.++..+++++|.+.|++. +++++.+ ....+|.|...+. ..+.+...|.+.|++....
T Consensus 293 l~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~gI~vs~~ 364 (452)
T PTZ00094 293 LKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFGI-------TGSKMEKLLDAVNISVNKN 364 (452)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCCC-------CHHHHHHHHHHCCcEEecc
Confidence 777767788888899999999999999885 8888742 2345666665433 4567888888889885322
Q ss_pred cccc-----CCeEE-EEecCCCC----HHHHHHHHHHHHHHHHH
Q psy852 728 ASQE-----QNDEV-FELQERKR----KDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 728 s~~~-----g~~~l-~sv~~~tT----~edId~li~~L~ei~~~ 761 (891)
.... ....+ ++++.+|| ++||+++++.|.+++..
T Consensus 365 ~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 365 TIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred cCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1111 12456 99888776 99999999999998864
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-11 Score=148.58 Aligned_cols=198 Identities=18% Similarity=0.122 Sum_probs=142.8
Q ss_pred CeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 142 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 142 ~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
+-+|++|..+|.+..-++...|.+++.|++|++|.+|+++|++.+++.. ....+|++|..++..+..+||++|++++
T Consensus 591 r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~---~~laaVmiT~Pnt~Gv~e~~V~eI~~ia 667 (954)
T PRK12566 591 RDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAG---DRLSCLMITYPSTHGVYEEGIREICEVV 667 (954)
T ss_pred CCEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccC---CCEEEEEEEecCcCceecchHHHHHHHH
Confidence 4568899999988877777788999999999999999999999997422 1257899999999888889999999999
Q ss_pred HHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhH
Q psy852 222 KEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVL 301 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (891)
+++|..+++|||.. +++.
T Consensus 668 h~~Galv~vDgA~~------------------------~a~~-------------------------------------- 685 (954)
T PRK12566 668 HQHGGQVYMDGANL------------------------NAQV-------------------------------------- 685 (954)
T ss_pred HHcCCEEEEEeeCh------------------------hhcc--------------------------------------
Confidence 99999999999981 0000
Q ss_pred HHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEE
Q psy852 302 LSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCL 381 (891)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~ 381 (891)
.+..| +-..||.+.+++|||+++|-+.|..
T Consensus 686 -------------------------------------------~l~~P-------g~~GADi~~~s~HKtf~~P~G~GGP 715 (954)
T PRK12566 686 -------------------------------------------GLARP-------ADIGADVSHMNLHKTFCIPHGGGGP 715 (954)
T ss_pred -------------------------------------------CCCCh-------hhcCCCEEEecCCcccCcCccCCCC
Confidence 00000 1125799999999999999999988
Q ss_pred EEec---cccchhhcccCccccCCCCCCcccccccccCCCCC----hh---HHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q psy852 382 WVAD---RYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR----FR---SLKLWFVIRTYGLSGLQKYIRRHCELAKL 451 (891)
Q Consensus 382 ~~r~---~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~----~~---~l~~w~~l~~~g~~G~~~ii~~~lelAr~ 451 (891)
.+.- +..+...+...|. .. .++. ..+ ++.+. .. ++..|..++.+|.+ +.+....++.+|+|
T Consensus 716 ~vG~iav~~~L~pfLp~~P~-~d--~~G~-~~r----~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnY 786 (954)
T PRK12566 716 GMGPIGVRAHLAPFVANHPV-VP--VEGP-DPN----NGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANY 786 (954)
T ss_pred ccchhhhhhhhhhhccCCCC-cC--CCCC-CCC----CCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHH
Confidence 8765 2222222221221 00 0110 001 12221 12 56889999999999 99999999999999
Q ss_pred HHHhhccCCccccc
Q psy852 452 FEGKVRRDPRFEIS 465 (891)
Q Consensus 452 l~~~L~~~~~~eVv 465 (891)
++++|.+ ++++.
T Consensus 787 la~rL~~--~~~v~ 798 (954)
T PRK12566 787 LANQLGG--AFPVL 798 (954)
T ss_pred HHHHhHh--hCCCC
Confidence 9999976 44444
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.1e-11 Score=137.68 Aligned_cols=236 Identities=12% Similarity=0.072 Sum_probs=151.6
Q ss_pred EEEecccchHHHHHHHHH----cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc--------hh
Q psy852 508 MAYCSKEAHSCVEKAAMM----AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS--------CY 573 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l----~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~--------c~ 573 (891)
.|+++..+|.+..+++.. .|++++.+|++++ ++|+++|+++|+++++ .+++. +..|+.. |+
T Consensus 156 ~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~t~----~v~l~~pn~tG~v~~l~~I~~~a~ 230 (447)
T PRK00451 156 KVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDDTA----AVVVQYPNFFGVIEDLEEIAEIAH 230 (447)
T ss_pred EEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCCeE----EEEEECCCCCCeeCCHHHHHHHHH
Confidence 588899999999998763 5889999999988 9999999999976432 22222 2234433 43
Q ss_pred hh-----h--c----------CCCCccEEEEcCccc-----CCcccccEEEEEeCCccchhhhccC-----------CCc
Q psy852 574 RK-----S--Q----------GIEYADSFNVNVNKW-----LLTAFDSSCLWVADRYKLTSALVVD-----------PLY 620 (891)
Q Consensus 574 ~~-----l--d----------Gi~~aDSIs~d~HK~-----L~~P~g~G~llvR~~~~L~~~l~~~-----------~~Y 620 (891)
++ + | +--.+|.+..++||| +++| ++|+++++++. + +.+... ..|
T Consensus 231 ~~~~~~iv~~d~~~~g~~~~~~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~-~-~~~~~~~~g~~~~~~~~~~~ 307 (447)
T PRK00451 231 AGGALFIVGVDPVSLGLLKPPGEYGADIVVGEGQPLGIPLSFGGP-YLGFFATRKKL-V-RQMPGRLVGETVDADGKRGF 307 (447)
T ss_pred HCCCEEEEEcChHHhccCCCcccCCCCEEEECCCcCCCCCCCCCC-CchHHHhhHHH-H-hhCCCCEeeeecccCCCeee
Confidence 32 1 2 234579999999998 5566 79999887642 2 211100 001
Q ss_pred cccC-C-CCCccccC-Cccccccc-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEE
Q psy852 621 LQHG-H-EGAIDYRH-WGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF 696 (891)
Q Consensus 621 l~~~-~-e~~~~~~~-~ti~~SRr-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~F 696 (891)
.... . ........ ....+++. ..++..+..++.++.+|++++.++..++++++.++|+++++++++..+....+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v 387 (447)
T PRK00451 308 VLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVV 387 (447)
T ss_pred EeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEE
Confidence 0000 0 00000000 00011111 2235666677788999999999999999999999999999999874444455666
Q ss_pred EecCCcchhhhhhHHHHHHHHHhCCcEEEe--eccc-cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 697 RLRSENNLIADQNNRKLLEDINASGRLHMV--PASQ-EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 697 r~~~~~~~~~d~ln~~L~~~L~~~G~~~~s--~s~~-~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
++. . ...++.++|.++|+.... .... .....+ ++++.++|++|||+++++|+++.
T Consensus 388 ~~~-~-------~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 388 RLP-K-------PAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred ecC-C-------CHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 652 1 246788889888765211 1111 112356 99999999999999999998753
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=129.91 Aligned_cols=278 Identities=11% Similarity=0.012 Sum_probs=174.6
Q ss_pred HHHHhhccCCc-cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-HHHHHHHcCc
Q psy852 451 LFEGKVRRDPR-FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC-VEKAAMMAFV 528 (891)
Q Consensus 451 ~l~~~L~~~~~-~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S-v~Kaa~l~gv 528 (891)
.+++.++..++ -+|+ +++|+|+++..++...-. .++-+++.+...|.+ +.+.+...|+
T Consensus 43 ~la~l~~~~~~~~~i~--~t~~~t~al~~~~~~l~~------------------~~~~vlv~~~~~~~~~~~~~a~~~g~ 102 (363)
T TIGR02326 43 QLLALATAEEGYTSVL--LQGSGTFAVEAVIGSAVP------------------KDGKLLVVINGAYGARIVQIAEYLGI 102 (363)
T ss_pred HHHHHhCCCCCceEEE--EcCCCHHHHHHHHHhcCC------------------CCCeEEEEeCChhhHHHHHHHHHcCC
Confidence 55555665443 2466 788999998877655311 123356666666666 3566777889
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc--------hhhh-----hcCC------------CC
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS--------CYRK-----SQGI------------EY 581 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~--------c~~~-----ldGi------------~~ 581 (891)
+++.||++.++.+|+++|+++|+++.... ...++. +..|+.. |+++ +|++ -.
T Consensus 103 ~~~~v~~~~~~~~d~~~l~~~l~~~~~~~-~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~ 181 (363)
T TIGR02326 103 PHHVVDTGEVEPPDVVEVEAILAADPAIT-HIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELH 181 (363)
T ss_pred ceEEEeCCCCCCCCHHHHHHHHhhCCCcc-EEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcC
Confidence 99999999999999999999998643211 122222 2345544 4331 2321 14
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCccccccc-----ccchHHHHHHHHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRR-----FRSLKLWFVIRTYG 655 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr-----~~aL~lW~~L~~lG 655 (891)
+|.+..++|||+++|.|+|+++++++. +...... ...|+... ..+..... ..+.++ ...+.+..+++.+.
T Consensus 182 ~D~~~~s~~K~l~~p~G~G~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~ft~~~~~~~al~~al~~l~ 257 (363)
T TIGR02326 182 IDYLISSANKCIQGVPGFGFVIARQAE-LAACKGNARSLSLDLY--DQWRCMED-NHGKWRFTSPTHVVHAFAQALLELE 257 (363)
T ss_pred ccEEEecCccccccCCcceEEEECHHH-HHHhhcCCCceeecHH--HHHHHHhc-cCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 799999999999999999999998762 2211100 00010000 00000000 001111 22345666777776
Q ss_pred Hh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--cee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc
Q psy852 656 LS-GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--RLG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE 731 (891)
Q Consensus 656 ~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~ 731 (891)
.+ +++++.++..++++++.+.|++. +++++.++ ..+ +++|++.+.. +.....+.+.|.++|+.+..+...
T Consensus 258 ~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~L~~~gi~v~~g~~~- 331 (363)
T TIGR02326 258 KEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDP----DYRFADFYQRLKEQGFVIYPGKVS- 331 (363)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCC----CCCHHHHHHHHHHCCEEEECCcCC-
Confidence 65 58888899999999999999886 77776543 344 4678875320 113457888898899886544332
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
....+ ++++.+++.+|+++++++|++++
T Consensus 332 ~~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 332 QVDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 33456 98877889999999999998765
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.7e-10 Score=127.46 Aligned_cols=159 Identities=15% Similarity=0.096 Sum_probs=105.6
Q ss_pred CCCCCccccccCCCCCCHHHHHHHHHHHh--cCCC--CCcccc--ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q psy852 13 THWQHPRFHAYFPSGNSYPSVLADMLSDA--IGCI--GFSWAA--SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNA 86 (891)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~--~n~~--~~~~~~--~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~ 86 (891)
.++.+-+|++... -|.+...+...+ ++.+ +..... .+...++|+ .|++++|.+..
T Consensus 57 ~~~~~~~YL~l~~----~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~~----------- 117 (407)
T PRK07179 57 IILQSNDYLNLSG----HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK----KLAAFTGFESC----------- 117 (407)
T ss_pred EEeecCCccCCCC----CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH----HHHHHhCCCcE-----------
Confidence 4566777888763 344444444332 1212 122222 245667774 77777887532
Q ss_pred CCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeE
Q psy852 87 TTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 166 (891)
Q Consensus 87 ~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v 166 (891)
.++++|+.++...+..+++. .-.|+++..+|+|+...+...+.++
T Consensus 118 --------------------~~~~sG~~An~~~l~~l~~~---------------g~~v~~~~~~h~s~~~~~~~~g~~~ 162 (407)
T PRK07179 118 --------------------LLCQSGWAANVGLLQTIADP---------------NTPVYIDFFAHMSLWEGVRAAGAQA 162 (407)
T ss_pred --------------------EEECCHHHHHHHHHHHhCCC---------------CCEEEEECCcCHHHHHHHHHCCCeE
Confidence 13568876554433333211 1237788999999988877666665
Q ss_pred EEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 167 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 167 ~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
..++ ..|+++|++.+++.. +.+|++...++.+|.+.|+++|+++|+++|+++|+|.|++
T Consensus 163 ~~~~-----~~d~~~l~~~l~~~~-----~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~ 221 (407)
T PRK07179 163 HPFR-----HNDVDHLRRQIERHG-----PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHS 221 (407)
T ss_pred EEec-----CCCHHHHHHHHHhcC-----CeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECccc
Confidence 4432 369999999986531 4577788899999999999999999999999999999994
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-10 Score=128.80 Aligned_cols=273 Identities=13% Similarity=0.050 Sum_probs=165.7
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++.+.. +. ++ +++|++++|..++.+.- + +.-.|+++..+|+++..++.+.|+++
T Consensus 71 ~lA~~~g~-~~--~~--~~~g~t~a~~~al~~l~----~---------------~gd~Vlv~~~~h~s~~~~~~~~G~~~ 126 (387)
T PRK09331 71 DLAEFLGM-DE--AR--VTHGAREGKFAVMHSLC----K---------------KGDYVVLDGLAHYTSYVAAERAGLNV 126 (387)
T ss_pred HHHHHhCC-Cc--EE--EeCCHHHHHHHHHHHhc----C---------------CCCEEEECCCchHHHHHHHHHcCCEE
Confidence 45555544 32 23 57899999988776641 1 12258889999999999888889999
Q ss_pred EEecC--CCCCCcCHHHHHHHHHhhhhc-CCccEEEE--ec---CCccc--------hhh-----hhcCC----------
Q psy852 531 KILEP--DDKNSLRGATLRQVMQQDETM-GYIPFFVS--TT---LGTTS--------CYR-----KSQGI---------- 579 (891)
Q Consensus 531 ~~Vp~--d~~G~mD~~~Le~aI~~d~~~-g~ip~~Vv--at---aGTT~--------c~~-----~ldGi---------- 579 (891)
+.+|. ++++.+|+++|+++|++.... +..+-+|+ .. .|+.. |++ ++|+.
T Consensus 127 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~ 206 (387)
T PRK09331 127 REVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDG 206 (387)
T ss_pred EEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCH
Confidence 99998 788999999999999763211 11122222 22 33332 433 23321
Q ss_pred --CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 580 --EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
.++|.+++++|||+++|.+.|+++++++ .+.........|.... ... ++. ..+...++.++.++..+-..
T Consensus 207 ~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~-~i~~~~~~~~~~~~~~----~~~--~~~-~~~~~~~~~~~aal~~~~~~ 278 (387)
T PRK09331 207 KKLGADFIVGSGHKSMAASAPSGVLATTEE-YADKVFRTSRKFGVKE----VEL--LGC-TLRGAPLVTLMASFPHVVER 278 (387)
T ss_pred HHcCCCEEEeeCcccccCCCCEEEEEECHH-HHhhcccccCCCcccc----eee--ece-ecCchHHHHHHHHHHHHHHH
Confidence 2489999999999999999999888653 2322111111121100 000 000 01222344455555433221
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcc--hhhhhhHHHHHHHHHhCCcEEEeeccccCC
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENN--LIADQNNRKLLEDINASGRLHMVPASQEQN 733 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~--~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~ 733 (891)
.+.+++.+++++++.+.|+++++++++.+ ...+++.|..+.... .........+.+.|.+.|+....+ ...
T Consensus 279 --~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~---~~~ 353 (387)
T PRK09331 279 --VKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKP---GAT 353 (387)
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEcc---CCc
Confidence 23566778899999999999999999853 245677787642210 011122356888998889862211 122
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 734 DEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 734 ~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.++.+.+...|++|+++++++|+++..
T Consensus 354 ~i~ri~~~g~t~~di~~l~~aL~~i~~ 380 (387)
T PRK09331 354 KEFKLSTYGLTWEQVEYVADAFKEIAE 380 (387)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 333333334689999999999998763
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-10 Score=130.50 Aligned_cols=254 Identities=14% Similarity=0.030 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC
Q psy852 53 PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP 132 (891)
Q Consensus 53 p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~ 132 (891)
+...++-..+.+.+++++|.++.... + .+++||+......+..+...
T Consensus 27 ~~~~~~~~~~~~~la~~~~~~~~~~~-------i--------------------~~~~~gt~~l~~~~~~~~~~------ 73 (355)
T TIGR03301 27 SEFNDVTDQVRDRLLALAGGDDNHTC-------V--------------------LLQGSGTFAVEATIGSLVPR------ 73 (355)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcE-------E--------------------EEeCCcHHHHHHHHHhccCC------
Confidence 34457778889999999999864210 0 12456654322222222100
Q ss_pred ccccccccCCeEEEecCCCChH-HHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 133 FVDEGVLLSKLMAYCSKEAHSC-VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 133 ~~~~g~~~~~~~v~~S~~~H~S-v~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
++-+++.+...+.+ +..++...|.+++.|+.+.++.+|+++|++.+++.. .+.+|+.+..+|.+|.+
T Consensus 74 --------~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~~~~G~~ 141 (355)
T TIGR03301 74 --------DGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADP----DITHVATVHHETTTGIL 141 (355)
T ss_pred --------CCeEEEECCCchhhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCC----CceEEEEEecCCcccch
Confidence 12234454444444 345556677899999998889999999999987532 24577788889999999
Q ss_pred cCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcc
Q psy852 212 DNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKK 291 (891)
Q Consensus 212 Dpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 291 (891)
.|+++|+++|+++++++++|++++-.. .
T Consensus 142 ~~~~~i~~l~~~~~~~livD~~~s~g~-~--------------------------------------------------- 169 (355)
T TIGR03301 142 NPLEAIAKVARSHGAVLIVDAMSSFGA-I--------------------------------------------------- 169 (355)
T ss_pred hHHHHHHHHHHHcCCEEEEEeccccCC-c---------------------------------------------------
Confidence 999999999999999999998661000 0
Q ss_pred cCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCc
Q psy852 292 IHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKW 371 (891)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~ 371 (891)
. .. ++.. .+|.+..++|||
T Consensus 170 ------------------------------------------~--------------~~----~~~~-~~d~~~~s~~K~ 188 (355)
T TIGR03301 170 ------------------------------------------P--------------ID----IEEL-DVDALIASANKC 188 (355)
T ss_pred ------------------------------------------c--------------cc----hhhc-CccEEEecCCcc
Confidence 0 00 0000 368999999999
Q ss_pred CCccCCceEEEEeccccchhhcccCccccCCCCCCccccc--ccccCCCCCh-hHHHHHHHHHHhcHHH-HHHHHHHHHH
Q psy852 372 LLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYR--HWGIPLSRRF-RSLKLWFVIRTYGLSG-LQKYIRRHCE 447 (891)
Q Consensus 372 ~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~sr~~-~~l~~w~~l~~~g~~G-~~~ii~~~le 447 (891)
+++|-+.|+++++++. +........+|..+.. ..+.+. ......+-+. ...++..+++.+-.+| +.+..++..+
T Consensus 189 l~~~~G~g~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~ 266 (355)
T TIGR03301 189 LEGVPGFGFVIARRDL-LEASAGNARSLYLDLY-DQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRR 266 (355)
T ss_pred cccCCceeEEEECHHH-HHHhhCCCCCceeeHH-HHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9999889999887642 2111111111110000 000000 0001111122 2345677888887776 8889999999
Q ss_pred HHHHHHHhhccCCccccccC
Q psy852 448 LAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~ 467 (891)
+++++.+.|++. +++++.+
T Consensus 267 ~~~~~~~~L~~~-g~~~~~~ 285 (355)
T TIGR03301 267 NRELLVDGLRAL-GFQPLLP 285 (355)
T ss_pred HHHHHHHHHHHc-CCeeecC
Confidence 999999999875 6776543
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-10 Score=127.73 Aligned_cols=246 Identities=14% Similarity=0.148 Sum_probs=153.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH---HHHcCceEEEecCCCCCCcCHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA---AMMAFVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka---a~l~gv~v~~Vp~d~~G~mD~~ 544 (891)
++++|+++++.++.+.... +.-.|++++.+|+++.+. +...|++++.+|.++++.+|++
T Consensus 60 ~~~~Gs~a~~~~l~~~~~~------------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~ 121 (353)
T PLN02721 60 FVPSGTMGNLISVLVHCDV------------------RGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLD 121 (353)
T ss_pred EecCccHHHHHHHHHHccC------------------CCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHH
Confidence 4567888888676653210 122488888999988773 4567899999999999999999
Q ss_pred HHHHHHHhhhhcC---CccEEEEec----CCccc-----------hhhh-----hc-----------C------CCCccE
Q psy852 545 TLRQVMQQDETMG---YIPFFVSTT----LGTTS-----------CYRK-----SQ-----------G------IEYADS 584 (891)
Q Consensus 545 ~Le~aI~~d~~~g---~ip~~Vvat----aGTT~-----------c~~~-----ld-----------G------i~~aDS 584 (891)
+|++.|++....+ ...++++.+ .|++. |.++ +| + ...+|+
T Consensus 122 ~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~ 201 (353)
T PLN02721 122 AIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADS 201 (353)
T ss_pred HHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCE
Confidence 9999998532111 112233221 34432 3321 12 1 236899
Q ss_pred EEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHH
Q psy852 585 FNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIR 664 (891)
Q Consensus 585 Is~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~ 664 (891)
+++++|||+++|. |++++.+++.+.........+ ..+ .+.. .+.......+.+...+.++
T Consensus 202 ~~~s~sK~l~~~~--G~~~~~~~~~~~~~~~~~~~~------------~~~---~~~~---~~~~~~~~~~l~~~~~~~~ 261 (353)
T PLN02721 202 VSVCLSKGLGAPV--GSVIVGSKSFIRKAKRLRKTL------------GGG---MRQV---GVLAAAALVALQENVPKLE 261 (353)
T ss_pred EEEecccccCCce--eeEEecCHHHHHhHHHHHHhc------------CCC---eehh---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999875 445555554332211110000 000 0000 1111111112223333455
Q ss_pred HHHHHHHHHHHHhccCCCcEE-eCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCC
Q psy852 665 RHCELAKLFEGKVRRDPRFEI-SNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQER 742 (891)
Q Consensus 665 ~~~~lA~~L~~~L~~~~~~ei-l~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~ 742 (891)
+..++++++.+.|++++++++ +.++..+.+.|++.... ......+.+.|.+.|+.+... +...+ ++++.+
T Consensus 262 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~gi~v~~~----~~~~lR~~~~~~ 333 (353)
T PLN02721 262 DDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGS----RITAEKLCKSLEEHGVLLMPG----NSSRIRVVTHHQ 333 (353)
T ss_pred HHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCc----cccHHHHHHHHHhCCcEEecC----CCceEEEEecCc
Confidence 667788999999999888876 66677888999985310 124567899999889885433 33456 999989
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy852 743 KRKDDLAYKRSFFVRML 759 (891)
Q Consensus 743 tT~edId~li~~L~ei~ 759 (891)
++++||++++++|++++
T Consensus 334 ~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 334 ISDSDVQYTLSCFQQAA 350 (353)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999998765
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-10 Score=129.26 Aligned_cols=242 Identities=13% Similarity=0.116 Sum_probs=154.5
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH---
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM--- 524 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~--- 524 (891)
+.+.+++.+...+. +|+ +++|+++++..++.+...... ..++..|+++..+|+++..+..
T Consensus 47 ~r~~la~~~g~~~~-~v~--~~~g~t~a~~~~l~~l~~~~~--------------~~g~~~vi~~~~~~~s~~~~~~~~~ 109 (353)
T TIGR03235 47 ARKQVAEALGADTE-EVI--FTSGATESNNLAILGLARAGE--------------QKGKKHIITSAIEHPAVLEPIRALE 109 (353)
T ss_pred HHHHHHHHhCCCCC-eEE--EeCCHHHHHHHHHHHHHHhcc--------------cCCCCeeeEcccccHHHHHHHHHHH
Confidence 33466666665444 566 778999999888766543210 0123469999999999877764
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh-----hhcCC---------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR-----KSQGI--------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~-----~ldGi--------- 579 (891)
..|++++.||.++++.+|+++|++++++++ ..+++. +..|+.. |++ ++|+.
T Consensus 110 ~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~----~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~ 185 (353)
T TIGR03235 110 RNGFTVTYLPVDESGRIDVDELADAIRPDT----LLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVD 185 (353)
T ss_pred hcCCEEEEEccCCCCcCCHHHHHHhCCCCC----EEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccc
Confidence 358899999999999999999999986532 122222 2345543 433 23431
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc-cchHHHHHHHHHH
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYG 655 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~-~aL~lW~~L~~lG 655 (891)
..+|++++++||| ++|.|+|+++++++..... ...+.+...... ..+. .++... ..+.+..+++.+
T Consensus 186 ~~~~~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~~~--~~~~~~~~~~~~-----~~~~-~gt~~~~~~~al~~al~~~- 255 (353)
T TIGR03235 186 LSADRIDLISCSGHKI-YGPKGIGALVIRKRGKPKA--PLKPIMFGGGQE-----RGLR-PGTLPVHLIVGMGEAAEIA- 255 (353)
T ss_pred ccccCCCEEEeehhhc-CCCCceEEEEEccCccccc--ccCceeeCCCCc-----Cccc-cCCCChHHHHHHHHHHHHH-
Confidence 3589999999999 5699999999998732111 111111111100 0000 111111 123445555543
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
.++.+++.++..++++++.+.|++ ++++++.++. .++++|.+.+. ..+.+.+.|.+ ++.+..+..
T Consensus 256 ~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~v~~~L~~-~i~v~~g~~ 323 (353)
T TIGR03235 256 RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDGV-------NSEALIVNLRA-DAAVSTGSA 323 (353)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCCc-------CHHHHHHHHhC-CeEEEchhh
Confidence 367888899999999999999988 8999986543 46899987543 35678888864 766554443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-09 Score=133.45 Aligned_cols=246 Identities=15% Similarity=0.078 Sum_probs=177.1
Q ss_pred ceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC----Cccc---------h
Q psy852 506 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL----GTTS---------C 572 (891)
Q Consensus 506 ~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata----GTT~---------c 572 (891)
+.+|++|..+|.+.-+++.+.|++++.||+|++|.+|+++|+++|++. +..+.+|+.+. |... |
T Consensus 578 R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~---~~~taaV~iT~pst~G~~e~~I~eI~~ia 654 (939)
T TIGR00461 578 RNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQH---GDELAAVMVTYPSTHGVFEPTIQHACDIV 654 (939)
T ss_pred CCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhc---CCceEEEEEEeCCcCceecccHHHHHHHH
Confidence 568999999999999999999999999999999999999999999862 22344454433 4432 2
Q ss_pred hh-----hhcC-------------CCCccEEEEcCcccCCccccc-----EEEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 573 YR-----KSQG-------------IEYADSFNVNVNKWLLTAFDS-----SCLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 573 ~~-----~ldG-------------i~~aDSIs~d~HK~L~~P~g~-----G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
++ ++|| -.+||.+.+|+||++++|.|+ |.+.+|+. +.+.+....-. ...+...
T Consensus 655 h~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~lPg~~v~-~t~d~~g- 730 (939)
T TIGR00461 655 HSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFLPKHDVV-SMITGIG- 730 (939)
T ss_pred HHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh--chhhcCCCccc-ccccCCC-
Confidence 22 2333 346899999999999988877 99999965 43333221110 0000000
Q ss_pred cccCCcccccccccc----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----ceeEEEEEecCC
Q psy852 630 DYRHWGIPLSRRFRS----LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----RLGLVCFRLRSE 701 (891)
Q Consensus 630 ~~~~~ti~~SRr~~a----L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----~~~iV~Fr~~~~ 701 (891)
...+.+...++.++. ++.|+.|+.+|.+|+++..+.++.+|+|+.++|++ +++++.+. ..+-++|++.+.
T Consensus 731 req~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~ 808 (939)
T TIGR00461 731 GSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPL 808 (939)
T ss_pred CccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccch
Confidence 001122334455554 89999999999999999999999999999999987 56776542 345688888653
Q ss_pred cchhhhhhHHHHHHHHHhCCcEEEeec-cccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 702 NNLIADQNNRKLLEDINASGRLHMVPA-SQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 702 ~~~~~d~ln~~L~~~L~~~G~~~~s~s-~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
.++.+..+..+.++|.+.|+...+.+ .+.+ .+ +.+.-.++++|||++++++.++.....
T Consensus 809 -~~~~g~~~~dIakrL~d~G~hapt~~~pv~g--~lmiepTE~eskeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 809 -KAKTGIEAIDVAKRLQDYGFHAPTLSFPVPG--TLMVEPTESESLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred -hhhcCCCHHHHHHHHHhCCeeccccCCccCC--eEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 23456778999999999998754433 2233 45 777778899999999999999875433
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.6e-11 Score=125.71 Aligned_cols=257 Identities=14% Similarity=0.147 Sum_probs=176.3
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH---H
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---M 524 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa---~ 524 (891)
+-++.++...+-.++ |-.+||..|++|+..--.+ +.--|++.+.+|.-...+. .
T Consensus 61 LE~~vA~l~GKEAgL-----Fv~SGTmgNllaIm~Hc~~------------------rg~eii~gd~~HI~~~E~gg~s~ 117 (384)
T KOG1368|consen 61 LEQRVAELFGKEAGL-----FVPSGTMGNLLAIMVHCHQ------------------RGSEIIVGDRAHIHRYEQGGISQ 117 (384)
T ss_pred HHHHHHHHhCcccee-----eecccccccHHHHHHHhcC------------------CCceEEeccchheeehhccChhh
Confidence 344555555543432 4557899999998764321 2335999999998776665 3
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhh--cCCccEEEE--ec---CCccc------------hhh-----hhcC--
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDET--MGYIPFFVS--TT---LGTTS------------CYR-----KSQG-- 578 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~--~g~ip~~Vv--at---aGTT~------------c~~-----~ldG-- 578 (891)
+.++.+++|...++|.||++++|++|....- .....-+|+ +| .|... |.+ |+||
T Consensus 118 l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGAR 197 (384)
T KOG1368|consen 118 LAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGAR 197 (384)
T ss_pred hccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhh
Confidence 5788999999999999999999999985321 112222333 22 23222 332 5676
Q ss_pred ---------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccccc
Q psy852 579 ---------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR 643 (891)
Q Consensus 579 ---------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~ 643 (891)
.+.+||+++++.|.|++|. |.+++.+++++.++- +++. ++ ..
T Consensus 198 i~NAavasgV~vk~i~~~fDSVsiCLSKglgAPV--GSViVG~k~FI~kA~-----~~RK-----------al-----GG 254 (384)
T KOG1368|consen 198 IFNAAVASGVPVKKICSAFDSVSICLSKGLGAPV--GSVIVGSKDFIDKAR-----HFRK-----------AL-----GG 254 (384)
T ss_pred hhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCc--ccEEEccHHHHHHHH-----HHHH-----------Hh-----cC
Confidence 2668999999999999998 568888887665431 1110 00 11
Q ss_pred chHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 644 SLKLWFVIRTYGLSGLQK---YIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~---~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
++++-.+|...+...+++ .+++.++.|+.|++.+.+.+++++-.+ .+.|+|...+... .-..+.+...+.+
T Consensus 255 GmRQsGvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~-----~~~~~~l~~~~~k 329 (384)
T KOG1368|consen 255 GMRQSGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQA-----RLTAEELCKFLEK 329 (384)
T ss_pred chhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccc-----cCCHHHHHHHHHH
Confidence 344445555555444443 566779999999999998888998655 7888888776543 3456789999999
Q ss_pred CCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHH
Q psy852 720 SGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 720 ~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei 758 (891)
.|+..+.+.+.+ ..+++++.+|.++++.++.++.+.
T Consensus 330 ~gi~lm~~~s~r---~Rivlh~Qvt~~~ve~~~~~~~k~ 365 (384)
T KOG1368|consen 330 NGILLMGGASRR---IRIVLHHQVTDEDVEYVKSVLSKK 365 (384)
T ss_pred CCeEEeeccccc---eEEEEEEecCHHHHHHHHHHHHHH
Confidence 999877765543 229999999999999999999643
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-10 Score=126.53 Aligned_cols=283 Identities=10% Similarity=0.002 Sum_probs=170.7
Q ss_pred HHHHHHHHhhccCCc-cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-HHHHHH
Q psy852 447 ELAKLFEGKVRRDPR-FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC-VEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~-~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S-v~Kaa~ 524 (891)
++.+.+++.+...+. .+++ +++|+|+++..++...-. .+.-+++.+...+.+ ...++.
T Consensus 35 ~~~~~la~~~~~~~~~~~i~--~~~~gt~~l~~~~~~~~~------------------~~~~vi~~~~~~~~~~~~~~a~ 94 (355)
T TIGR03301 35 QVRDRLLALAGGDDNHTCVL--LQGSGTFAVEATIGSLVP------------------RDGKLLVLINGAYGERLAKICE 94 (355)
T ss_pred HHHHHHHHHhcCCCCCcEEE--EeCCcHHHHHHHHHhccC------------------CCCeEEEECCCchhhHHHHHHH
Confidence 344466666665444 2344 577888888877655321 012235455544444 456677
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc--------hhhh-----hcCC----------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS--------CYRK-----SQGI---------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~--------c~~~-----ldGi---------- 579 (891)
..|.+++.+|.+.++.+|+++|++++.+..+.. ....+. +..|+.. |+++ +|+.
T Consensus 95 ~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~-~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~ 173 (355)
T TIGR03301 95 YLGIPHTDLNFSEYEPPDLNRIEEALAADPDIT-HVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDI 173 (355)
T ss_pred HcCCceEEEecCCCCCCCHHHHHHHHHhCCCce-EEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccch
Confidence 889999999998889999999999998642211 111111 2345543 4332 2221
Q ss_pred --CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccC--Cccccccc-ccchHHHHHHHHH
Q psy852 580 --EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH--WGIPLSRR-FRSLKLWFVIRTY 654 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~--~ti~~SRr-~~aL~lW~~L~~l 654 (891)
-.+|.+..++|||+++|.|+|+++++++. +.........|..+.. ..+.... .....+-. .....+..+++.+
T Consensus 174 ~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~ 251 (355)
T TIGR03301 174 EELDVDALIASANKCLEGVPGFGFVIARRDL-LEASAGNARSLYLDLY-DQWAYMEKTGKWRFTPPTHTVYAFAQALEEL 251 (355)
T ss_pred hhcCccEEEecCCcccccCCceeEEEECHHH-HHHhhCCCCCceeeHH-HHHHHhhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 24799999999999999999999988652 2221101111100000 0000000 00000111 1123456677777
Q ss_pred HHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc--ee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 655 GLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVR--LG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 655 G~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~--~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
..+| +.+..++..++++++.+.|++. +++++.++. .+ +++|++++.. +....++.++|.++|++...+...
T Consensus 252 ~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~i~~~~~~ 326 (355)
T TIGR03301 252 EAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDP----DFDFDDFYQELKERGFVIYPGKLT 326 (355)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCC----cchHHHHHHHHHHCCEEEECCccc
Confidence 7776 8888899999999999999886 677765432 33 5678875321 123467889999999875443322
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
. ...+ |+++.+++++|++++++.|+++
T Consensus 327 ~-~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 327 L-ADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred c-ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 2 2566 9998889999999999999864
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-11 Score=134.56 Aligned_cols=264 Identities=29% Similarity=0.439 Sum_probs=206.6
Q ss_pred HHHHHHHHHhhccC-CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccc-cccceEEEecccchHHHHHHH
Q psy852 446 CELAKLFEGKVRRD-PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGV-LLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 446 lelAr~l~~~L~~~-~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~-~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
-+.++++.+.+... +.-+++ +++|+|++|++++.+++.+..++.+. .+. ..++.+|+++..+|+++.+++
T Consensus 41 ~~~~~~~~~~~g~~~~~~~~~--~t~ggt~a~~~al~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~h~~~~~~~ 112 (345)
T cd06450 41 AEVVNWLAKLFGLPSEDADGV--FTSGGSESNLLALLAARDRARKRLKA------GGGRGIDKLVIVCSDQAHVSVEKAA 112 (345)
T ss_pred HHHHHHHHHHhCCCCCCCCEE--EeCChhHHHHHHHHHHHHHhhhhhhc------ccccccCCeEEEEcCcchhHHHHHH
Confidence 34455666666542 223455 88999999999999998865443221 111 124579999999999999999
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----hhcC-------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----KSQG------- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~ldG------- 578 (891)
.+++.+++.||+++++.+|+++|+++|+++.+++..+.+|+.+.+++. |++ ++|+
T Consensus 113 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~ 192 (345)
T cd06450 113 AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLL 192 (345)
T ss_pred HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHh
Confidence 988999999999999999999999999886666655666665554433 333 2232
Q ss_pred -----------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHH
Q psy852 579 -----------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647 (891)
Q Consensus 579 -----------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l 647 (891)
++.+|++++|+|||+++|++||+++++ ++++
T Consensus 193 ~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~--------------------------------------~~~~ 234 (345)
T cd06450 193 PFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR--------------------------------------ALKL 234 (345)
T ss_pred hChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH--------------------------------------HHHH
Confidence 247999999999999999999988664 6789
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee
Q psy852 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 648 W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~ 727 (891)
|.+++.++..|+++++++..++++++.+.|++.++++++.+++.++|+|++.+.. +.+..+.++.++|.++|.+++.+
T Consensus 235 ~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~--~~~~~~~~i~~~L~~~g~~~~~~ 312 (345)
T cd06450 235 WATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSV--KLDELNYDLSDRLNERGGWHVPA 312 (345)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcc--hhhHHHHHHHHHHHhcCCEEEEe
Confidence 9999999999999999999999999999999999999988888999999996520 11235678999999998776766
Q ss_pred ccccCCeEE-EEecCC-CCHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEV-FELQER-KRKDDLAYKRSFFVR 757 (891)
Q Consensus 728 s~~~g~~~l-~sv~~~-tT~edId~li~~L~e 757 (891)
....+...+ ++++.+ +|.+|||+++++|++
T Consensus 313 ~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 313 TTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred eEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 555556677 998875 699999999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=125.78 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=74.6
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC------CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK------NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~------g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I 217 (891)
.|+++..+|.|+..++.+.+.++++++++.+ +.+|+++|++.+++.. .+.+|++|.. |.+|.+.|+++|
T Consensus 101 ~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~----~~k~v~l~~p-~~~G~~~dl~~I 175 (294)
T cd00615 101 KILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHP----DAKAAVITNP-TYYGICYNLRKI 175 (294)
T ss_pred EEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCC----CceEEEEECC-CCCCEecCHHHH
Confidence 4888889999999999888888898887532 4799999999997532 2456777766 579999999999
Q ss_pred HHHHHHcCCceeeeccccCCc
Q psy852 218 GPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++|+++|++++||+|||..+
T Consensus 176 ~~~~~~~g~~livDeA~~~~~ 196 (294)
T cd00615 176 VEEAHHRGLPVLVDEAHGAHF 196 (294)
T ss_pred HHHHHhcCCeEEEECcchhhh
Confidence 999999999999999997544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-09 Score=122.67 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=77.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhc-CCcceEEEeecccCccccccCHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETM-GYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~-g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
.|+++..+|+|...++...+.+++.++.+ .++.+|+++|++.+++.... +..+.+|+++..++.+|.+.|+++|+++
T Consensus 92 ~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~l 171 (370)
T TIGR02539 92 WVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKV 171 (370)
T ss_pred EEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHH
Confidence 47788899999998888888899999986 35889999999999753221 1235688888899999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++++|.|++
T Consensus 172 a~~~~~~livDea~~ 186 (370)
T TIGR02539 172 CREKGVPLLLNCAYT 186 (370)
T ss_pred HHHcCCeEEEECccc
Confidence 999999999999983
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-10 Score=127.34 Aligned_cols=252 Identities=14% Similarity=0.052 Sum_probs=157.6
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccC
Q psy852 52 SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH 131 (891)
Q Consensus 52 ~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~ 131 (891)
++...+....+.+.+++++|.++... -+ ..+++|+..-+..+..+. ..
T Consensus 32 ~~~~~~~~~~~~~~l~~l~~~~~~~~-------~i--------------------~~~~~gt~~l~~~~~~l~--~~--- 79 (368)
T PRK13479 32 DDDFNALTASVRAKLVAIATGEEGYT-------CV--------------------PLQGSGTFSVEAAIGSLV--PR--- 79 (368)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCCCce-------EE--------------------EEcCCcHHHHHHHHHhcc--CC---
Confidence 35556778889999999999864310 00 124566543333233221 11
Q ss_pred CccccccccCCeEEEecCCCChHH--HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccc
Q psy852 132 PFVDEGVLLSKLMAYCSKEAHSCV--EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCC 209 (891)
Q Consensus 132 ~~~~~g~~~~~~~v~~S~~~H~Sv--~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~G 209 (891)
++- +++....+|.. .+.+...|.+++.|+++.++.+|+++|++.+++..+ +.+|.++..+|.+|
T Consensus 80 ---------~~~-vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG 145 (368)
T PRK13479 80 ---------DGK-VLVPDNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPR----ITHVALVHCETTTG 145 (368)
T ss_pred ---------CCe-EEEEeCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCC----CcEEEEEcccCccc
Confidence 122 33333445544 355566778999999998889999999999875321 34778889999999
Q ss_pred cccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhh
Q psy852 210 SFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKL 289 (891)
Q Consensus 210 avDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (891)
.+.|+++|.++|+++|+++++|++++ +...
T Consensus 146 ~~~~~~~i~~l~~~~~~~livDa~~~-~g~~------------------------------------------------- 175 (368)
T PRK13479 146 ILNPLDEIAAVAKRHGKRLIVDAMSS-FGAI------------------------------------------------- 175 (368)
T ss_pred cccCHHHHHHHHHHcCCEEEEEcccc-cCCc-------------------------------------------------
Confidence 99999999999999999999997661 0000
Q ss_pred cccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCC
Q psy852 290 KKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVN 369 (891)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~H 369 (891)
..++ ... .+|.+..++|
T Consensus 176 ----------------------------------------------------------~~~~----~~~-~~d~~v~s~~ 192 (368)
T PRK13479 176 ----------------------------------------------------------PIDI----AEL-GIDALISSAN 192 (368)
T ss_pred ----------------------------------------------------------cccc----ccc-CceEEEecCc
Confidence 0000 000 3588899999
Q ss_pred CcCCccCCceEEEEeccccchhhcccCccccCCCC-CCc--ccccccccCCCCC-hhHHHHHHHHHHhcHH-HHHHHHHH
Q psy852 370 KWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH-EGA--IDYRHWGIPLSRR-FRSLKLWFVIRTYGLS-GLQKYIRR 444 (891)
Q Consensus 370 K~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~-~~~--~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~-G~~~ii~~ 444 (891)
||+++|.+.|+++++++. +........+|..+.. .-. .....+.+ +.. ...+.+..+++.+-.+ ++.+.+++
T Consensus 193 K~l~g~~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~l~~al~~l~~~~~~~~~~~~ 269 (368)
T PRK13479 193 KCIEGVPGFGFVIARRSE-LEACKGNSRSLSLDLYDQWAYMEKTGQWRF--TPPTHVVAAFYQALLELEEEGGVPARGAR 269 (368)
T ss_pred cccccCCCceEEEECHHH-HHHhhcCCCCeeecHHHHHhhhcccCCCCC--CCcHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 999999999999997642 1111111111111000 000 00001111 112 2345677888877655 57888899
Q ss_pred HHHHHHHHHHhhccCCcccccc
Q psy852 445 HCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~ 466 (891)
..++++++.+.|.+. +++++.
T Consensus 270 ~~~~~~~l~~~L~~~-g~~~~~ 290 (368)
T PRK13479 270 YANNQRTLVAGMRAL-GFEPLL 290 (368)
T ss_pred HHHHHHHHHHHHHHc-CCcccC
Confidence 999999999999876 677663
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-09 Score=119.82 Aligned_cols=270 Identities=12% Similarity=0.043 Sum_probs=163.1
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~ 529 (891)
+.+++.+.. + +++ +++|+++++..++.+.. + +.-.|+++..+|++...++...|++
T Consensus 51 ~~la~~~g~-~--~i~--~~~g~t~al~~~l~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~g~~ 106 (361)
T cd06452 51 HDLAEFLGM-D--EAR--VTPGAREGKFAVMHSLC----E---------------KGDWVVVDGLAHYTSYVAAERAGLN 106 (361)
T ss_pred HHHHHHcCC-c--eEE--EeCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCcchHHHHHHHhcCCE
Confidence 344444443 2 344 67889999887776531 1 1224788889999999888888999
Q ss_pred EEEecCCCCC--CcCHHHHHHHHHhhhhc---CCccEEEEec---CCccc--------hhh-----hhcCC---------
Q psy852 530 LKILEPDDKN--SLRGATLRQVMQQDETM---GYIPFFVSTT---LGTTS--------CYR-----KSQGI--------- 579 (891)
Q Consensus 530 v~~Vp~d~~G--~mD~~~Le~aI~~d~~~---g~ip~~Vvat---aGTT~--------c~~-----~ldGi--------- 579 (891)
++.+|.+.++ .+|+++|++++++..+. ....++++.. .|+.. |++ .+|+.
T Consensus 107 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~ 186 (361)
T cd06452 107 VREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVS 186 (361)
T ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCC
Confidence 9999998765 99999999999753221 1112222221 34332 333 12321
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccc--cccccchHHHHHHHHH
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPL--SRRFRSLKLWFVIRTY 654 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~--SRr~~aL~lW~~L~~l 654 (891)
..+|.+..++||++++|.++|+++.+++ .+.........| . ....+..+ ++...++.++.++..+
T Consensus 187 ~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~-~~~~l~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~al~~~ 256 (361)
T cd06452 187 GKELGADFIVGSGHKSMAASAPIGVLATTEE-WADIVFRTSQMF-K--------IKEVELLGCTLRGAPLVTLMASFPHV 256 (361)
T ss_pred HHHcCCCEEEecCCccccCCCCeEEEEECHH-HHHHHhcccccc-c--------cceeeeeccccCchHHHHHHHHHHHH
Confidence 1379999999999999999998888643 332221111111 1 00011111 1122344555555443
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC--CCceeEEEEEecCCcch--hhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN--DVRLGLVCFRLRSENNL--IADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~--~~~~~iV~Fr~~~~~~~--~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
. ...+.+++..+++++|.+.|+++++++++. +...|++.|+....... ..+.....+.+.|.++|+.. .. ..
T Consensus 257 -~-~~~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~-~~-~~ 332 (361)
T cd06452 257 -K-ERVKRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHG-IK-PG 332 (361)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceE-Ec-CC
Confidence 2 223456666778899999999999999874 34567888887521100 00112236889998899872 11 11
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
. ..++ +++ ...|++|++.++++|+++.
T Consensus 333 ~-~~~~ri~~-~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 333 L-TRYFKLST-YGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred C-ceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence 1 2344 555 2358999999999998653
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-09 Score=121.99 Aligned_cols=283 Identities=11% Similarity=0.048 Sum_probs=170.2
Q ss_pred HHHHHHHHHhhccCCc-cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH--HHH
Q psy852 446 CELAKLFEGKVRRDPR-FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV--EKA 522 (891)
Q Consensus 446 lelAr~l~~~L~~~~~-~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv--~Ka 522 (891)
-++.+.+++.+...+. .+++ +++++++++..++...-. .++-+++.+ ..++.. .+.
T Consensus 40 ~~~~~~l~~l~~~~~~~~~i~--~~~~gt~~l~~~~~~l~~------------------~~~~vlv~~-~~~~~~~~~~~ 98 (368)
T PRK13479 40 ASVRAKLVAIATGEEGYTCVP--LQGSGTFSVEAAIGSLVP------------------RDGKVLVPD-NGAYGARIAQI 98 (368)
T ss_pred HHHHHHHHHHhCCCCCceEEE--EcCCcHHHHHHHHHhccC------------------CCCeEEEEe-CCchHHHHHHH
Confidence 3344455666655332 3344 677888888877665411 012234433 334332 466
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc--------hhhh-----hcCC--------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS--------CYRK-----SQGI-------- 579 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~--------c~~~-----ldGi-------- 579 (891)
+...|++++.||.+.++.+|+++|++++++.... ....+.. +..|+.. |+++ +|+.
T Consensus 99 ~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~-~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~ 177 (368)
T PRK13479 99 AEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRI-THVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPI 177 (368)
T ss_pred HHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCC-cEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccc
Confidence 7778899999999888899999999999764211 1122222 2345543 4331 2221
Q ss_pred ----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCc-cccCCCCC--ccccCCccccccc-ccchHHHHHH
Q psy852 580 ----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLY-LQHGHEGA--IDYRHWGIPLSRR-FRSLKLWFVI 651 (891)
Q Consensus 580 ----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Y-l~~~~e~~--~~~~~~ti~~SRr-~~aL~lW~~L 651 (891)
..+|.+..+.|||+++|.|+|+++++++. +.........| +....... .....+.+ +-. ...+.+..++
T Consensus 178 ~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~l~~al 254 (368)
T PRK13479 178 DIAELGIDALISSANKCIEGVPGFGFVIARRSE-LEACKGNSRSLSLDLYDQWAYMEKTGQWRF--TPPTHVVAAFYQAL 254 (368)
T ss_pred cccccCceEEEecCccccccCCCceEEEECHHH-HHHhhcCCCCeeecHHHHHhhhcccCCCCC--CCcHHHHHHHHHHH
Confidence 24799999999999999999999997652 22111111111 10000000 00000000 111 1234566777
Q ss_pred HHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc--e-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee
Q psy852 652 RTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR--L-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 652 ~~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~--~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~ 727 (891)
+.+..+ ++++.+++..++++++.+.|++. +++++.++. . .+++|.+.... +...+++.+.|.++|+.+..+
T Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~gi~v~~g 329 (368)
T PRK13479 255 LELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADP----AYDFKEFYERLKEQGFVIYPG 329 (368)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCC----CcCHHHHHHHHHHCCEEEecC
Confidence 766555 47888899999999999999887 777764432 2 46788865321 113468899999999885433
Q ss_pred ccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 728 s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
. ......+ ++.+.++|++|+++++++|+++.
T Consensus 330 ~-~~~~~~iRis~~~~~t~edi~~~l~~L~~~l 361 (368)
T PRK13479 330 K-LTQVDTFRIGCIGDVDAADIRRLVAAIAEAL 361 (368)
T ss_pred C-CCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 2 2223456 88777889999999999999876
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-09 Score=122.43 Aligned_cols=279 Identities=10% Similarity=0.026 Sum_probs=167.8
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH--HHHHHHcCc
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV--EKAAMMAFV 528 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv--~Kaa~l~gv 528 (891)
.+++.+...++-.++ +++++++++..++... .+ +.-.|+++...|++. ...+...|.
T Consensus 50 ~l~~~~g~~~~~~vi--~~~~gt~a~~~a~~~~----~~---------------~Gd~Vlv~~~~~~~~~~~~~~~~~g~ 108 (401)
T PLN02409 50 DVKYIFKTKSGTPFI--FPTTGTGAWESALTNT----LS---------------PGDKVVSFRIGQFSLLWIDQMQRLNF 108 (401)
T ss_pred HHHHHhCCCCCCEEE--EeCCcHHHHHHHHHhc----CC---------------CCCEEEEeCCCchhHHHHHHHHHcCC
Confidence 444444443332444 5567777766555331 11 112366667788765 355566788
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc----------hhhh-----hcCC-----------
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS----------CYRK-----SQGI----------- 579 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~----------c~~~-----ldGi----------- 579 (891)
+++.++.+.++.+|+++|++++++++......++++ +..|... |+++ +|++
T Consensus 109 ~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~ 188 (401)
T PLN02409 109 DVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMD 188 (401)
T ss_pred ceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccccc
Confidence 999999987777999999999987421111222222 2345543 2221 3332
Q ss_pred -CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc--CCCccccCC-CCCccccCCcccccccc-cchHHHHHHHHH
Q psy852 580 -EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV--DPLYLQHGH-EGAIDYRHWGIPLSRRF-RSLKLWFVIRTY 654 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~--~~~Yl~~~~-e~~~~~~~~ti~~SRr~-~aL~lW~~L~~l 654 (891)
-.+|.+.+++|||+++|.|+|+++++++. +...... .+.|..-.. ......+.+. ..+=.+ ..+.+-.+++.+
T Consensus 189 ~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~Tp~~~~~~al~~al~~~ 266 (401)
T PLN02409 189 EWGVDVALTGSQKALSLPTGLGIVCASPKA-LEASKTAKSPRVFFDWADYLKFYKLGTYW-PYTPSIQLLYGLRAALDLI 266 (401)
T ss_pred ccCccEEEEcCccccCcCCCcceeEECHHH-HHHHhcCCCCCeecCHHHHHHHHhcCCCC-CCCccHHHHHHHHHHHHHH
Confidence 14799999999999999999999987662 2221111 111211000 0000000000 001111 123555666777
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC---ce-eEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeecc
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV---RL-GLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPAS 729 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~---~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~ 729 (891)
-..|++++.++..++++++.+.|++. +++++.+. .+ .+++|+++.. ...+++.+.|.+ .|+....+..
T Consensus 267 ~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~------~~~~~l~~~l~~~~~i~i~~G~~ 339 (401)
T PLN02409 267 FEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEG------IDSAEIVKNAWKKYNLSLGLGLN 339 (401)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCC------CCHHHHHHHHHHhCCEEEEcCCC
Confidence 77899999999999999999999886 78988642 23 5677887421 234567777754 5665444443
Q ss_pred ccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 730 QEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 730 ~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+.++ ++.+.+++.+||..++++|++..
T Consensus 340 ~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l 370 (401)
T PLN02409 340 KVAGKVFRIGHLGNVNELQLLGALAGVEMVL 370 (401)
T ss_pred cccCCEEEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 3234556 99888999999999999999875
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=121.50 Aligned_cols=257 Identities=13% Similarity=0.058 Sum_probs=157.7
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH---H
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA---A 523 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka---a 523 (891)
++.+.+++.+. +. +++ +++||++++..++.+... +.-.|+++...|+++.++ +
T Consensus 36 ~l~~~~a~~~g--~~-~~~--~~~~gt~a~~~~~~~l~~-------------------~gd~v~~~~~~~~~~~~~~~~~ 91 (338)
T cd06502 36 KLEARAAELFG--KE-AAL--FVPSGTAANQLALAAHTQ-------------------PGGSVICHETAHIYTDEAGAPE 91 (338)
T ss_pred HHHHHHHHHhC--CC-eEE--EecCchHHHHHHHHHhcC-------------------CCCeEEEecCcceeeecCCcHH
Confidence 33445555555 22 344 567889998877765321 122477889999887664 3
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhc---CCccEEEEe--cCCccc-----------hhh-----hhcC----
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETM---GYIPFFVST--TLGTTS-----------CYR-----KSQG---- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~---g~ip~~Vva--taGTT~-----------c~~-----~ldG---- 578 (891)
.+.|++++.+|.+. +.+|+++|++++++.... ....++++. +.|+.. |++ ++|+
T Consensus 92 ~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~ 170 (338)
T cd06502 92 FLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLA 170 (338)
T ss_pred HHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHH
Confidence 46789999999865 889999999999753211 111222221 234421 332 1232
Q ss_pred -------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccch
Q psy852 579 -------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSL 645 (891)
Q Consensus 579 -------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL 645 (891)
...+|.++.++|||++.|. |.+++.+++.+.........+ + .+-+..++
T Consensus 171 ~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~ 232 (338)
T cd06502 171 NAAAALGVALKTYKSGVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQA--------------G--GGMRQSGF 232 (338)
T ss_pred HHHHhcCCCHHHHHhcCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHh--------------C--CChhhHHH
Confidence 1357999999999999886 445555554332211110000 0 01112233
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH---hCCc
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN---ASGR 722 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~---~~G~ 722 (891)
.++..+..+...++.+.+++..++++++.+.|++.+ +. +.++..|++.+++.+. +.....+.+.+. +.|+
T Consensus 233 ~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~-~~~~~~~~~~v~~~~~-----~~~~~~l~~~l~~~~~~gi 305 (338)
T cd06502 233 LAAAGLAALENDLWLRRLRHDHEMARRLAEALEELG-GL-ESEVQTNIVLLDPVEA-----NAVFVELSKEAIERRGEGV 305 (338)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcC-CC-cccccCCeEEEecCCc-----cHHHHHHHHHHHHhhhCCE
Confidence 445555556555678888999999999999999874 33 3456788999987532 233444555543 5687
Q ss_pred EEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 723 LHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 723 ~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
.+... +...+ |+++.++|++|++++++++++
T Consensus 306 ~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 306 LFYAW----GEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred EEEec----CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 64322 11456 999999999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-09 Score=116.60 Aligned_cols=299 Identities=15% Similarity=0.120 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH
Q psy852 442 IRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK 521 (891)
Q Consensus 442 i~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K 521 (891)
+.-.+++-..+.++|.++-|+.-+.--...|+..=+.+|++.|.....+.. ..+-++++++.||=..-.
T Consensus 104 vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~-----------~~R~~~LIP~SAHGTNPA 172 (496)
T COG1003 104 VQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGE-----------GHRNICLIPDSAHGTNPA 172 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCC-----------CcCcEEEeeccccCCChh
Confidence 344455666677778777777666533345577888899999987654321 246689999999999999
Q ss_pred HHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc------hhh--------hhcCC------
Q psy852 522 AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS------CYR--------KSQGI------ 579 (891)
Q Consensus 522 aa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~------c~~--------~ldGi------ 579 (891)
.|.+.|.+++.|++|++|.+|+++|++.++++.+ -++|. +|.|-.. |.- .+||.
T Consensus 173 SAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~A----alMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~v 248 (496)
T COG1003 173 SAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNLA----ALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIV 248 (496)
T ss_pred hHhhcCceEEEEecCCCCCccHHHHHHHhcccee----EEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhh
Confidence 9999999999999999999999999999996543 33333 3556554 321 24442
Q ss_pred -------CCccEEEEcCcccCCcccc-----cEEEEEeCCccchhhhccCCCccccCC-CCCccccCCccccccc----c
Q psy852 580 -------EYADSFNVNVNKWLLTAFD-----SSCLWVADRYKLTSALVVDPLYLQHGH-EGAIDYRHWGIPLSRR----F 642 (891)
Q Consensus 580 -------~~aDSIs~d~HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~~Yl~~~~-e~~~~~~~~ti~~SRr----~ 642 (891)
-++|-+-++.||.+.+|-| .|=+-++.. |.+.+-....|...+. ...++. ..++.-++. +
T Consensus 249 G~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~--L~pfLP~p~~~~~~~~y~~~~~~-~~s~g~~~a~~Gs~ 325 (496)
T COG1003 249 GLARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAH--LAPFLPGPVVYHDVGEYRLDYDG-KKSIGVSAAPYGSA 325 (496)
T ss_pred ccccccccccceEEeecccccccCCCCCCCCCCceehHhh--ccccCCCCcccCCCccccccCCC-CccceeeccccCcc
Confidence 4489999999999988865 555666644 3332221101100000 000111 122222222 2
Q ss_pred cc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 643 RS-LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 643 ~a-L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
.. ...|+.++.+|.+|+++.-+..+-+|+|+..+|+. .++++-.+. -.=+.|..++. .+........+.++|.
T Consensus 326 ~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~l-~~~~Gv~~~DvAKrLl 402 (496)
T COG1003 326 SILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARPL-KKETGVRALDVAKRLL 402 (496)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechHh-HhhcCCcHHHHHHHHH
Confidence 22 46899999999999999999999999999999986 566642222 22223333321 1223445678899999
Q ss_pred hCCcEEEeec-cccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMVPA-SQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 719 ~~G~~~~s~s-~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
+-|+.-.+-+ .+.-.+.+ |-....-+++++|++++++.++.+.
T Consensus 403 D~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~E 447 (496)
T COG1003 403 DYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREE 447 (496)
T ss_pred hcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9887521111 11112233 4444456999999999999999853
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-09 Score=117.63 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSL 109 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~ 109 (891)
.|-++..+.....+.+...+...+...++|..+.++++..+|.+.... .+ .++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-------~~--------------------~~~ 65 (350)
T cd00609 13 PPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE-------EI--------------------VVT 65 (350)
T ss_pred CHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcc-------eE--------------------EEe
Confidence 344444444345556666667778888999999999999988643311 00 123
Q ss_pred cchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccH--HHHHHHHH
Q psy852 110 GGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRG--ATLRQVMQ 187 (891)
Q Consensus 110 ~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~--~~L~~~l~ 187 (891)
.||+ +++..++..... +...|+++..+|+++..++...+.+++.|+.++++.++. +.++..+.
T Consensus 66 ~~~t-~a~~~~~~~~~~--------------~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 130 (350)
T cd00609 66 NGAQ-EALSLLLRALLN--------------PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKT 130 (350)
T ss_pred cCcH-HHHHHHHHHhCC--------------CCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcC
Confidence 4554 333322222211 123488889999999999988888999999999888876 55554433
Q ss_pred hhhhcCCcceEEEeecccCccccccCHHHHH---HHHHHcCCceeeeccccCCc
Q psy852 188 QDETMGYIPFFVSTTLGTTSCCSFDNLAEIG---PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 188 ~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~---~i~~~~~~~lHvDaA~GG~~ 238 (891)
. .+.+|+++..++.+|.+.|++++. ++|+++|+++++|+|++++.
T Consensus 131 ~------~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~ 178 (350)
T cd00609 131 P------KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELV 178 (350)
T ss_pred c------cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhce
Confidence 2 255777888999999999977665 89999999999999997654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=122.89 Aligned_cols=174 Identities=12% Similarity=0.017 Sum_probs=116.9
Q ss_pred cCCCCCCccccccCCCCCCHHHHHHHHHHHhcC-CCCCccccChh----HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q psy852 11 QVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIG-CIGFSWAASPS----CTELETIVLDWLGKAIGLPEKFLMYPPQGKN 85 (891)
Q Consensus 11 ~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n-~~~~~~~~~p~----~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g 85 (891)
...+|.+-.|+++-.++...++++..+.....+ ++...+..+.. ++.+-.+.-+.+|+++|.+....
T Consensus 5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~-------- 76 (370)
T PRK05937 5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFI-------- 76 (370)
T ss_pred ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEE--------
Confidence 356899999999988887778777666665322 21112333333 45666677888999999864321
Q ss_pred CCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCe
Q psy852 86 ATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 165 (891)
Q Consensus 86 ~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~ 165 (891)
+++|. .. |...+ .... .+.-.|+++..+|.|+..++......
T Consensus 77 ----------------------~~sG~-~a-~~~~~---~~~~-----------~~~d~ii~d~~~H~sv~~~~~~~~~~ 118 (370)
T PRK05937 77 ----------------------VPSGY-MA-NLGLC---AHLS-----------SVTDYVLWDEQVHISVVYSLSVISGW 118 (370)
T ss_pred ----------------------ECChH-HH-HHHHH---HHhC-----------CCCCEEEEEhhhhHHHHHHHHHcCCc
Confidence 23333 32 32211 1110 01234777799999999998653322
Q ss_pred EEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 166 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 166 v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
.+.. +..|+++|++.|++..+.+..+.+|+++..++.+|.+.|+++|+++|+++|+++|||+|++
T Consensus 119 ~~~~-----~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~ 183 (370)
T PRK05937 119 HQSF-----RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHA 183 (370)
T ss_pred eEEe-----cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCcc
Confidence 2222 4578999999998654333335677788999999999999999999999999999999994
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-09 Score=125.57 Aligned_cols=274 Identities=11% Similarity=0.059 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHhcCCCC-----Cccc-cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q psy852 30 YPSVLADMLSDAIGCIG-----FSWA-ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPA 103 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~-----~~~~-~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~ 103 (891)
-|++...+.+.+.|-.+ ..+. +.....++|..+.+...++||....... +
T Consensus 47 s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~--------~---------------- 102 (475)
T PLN03226 47 SRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWG--------V---------------- 102 (475)
T ss_pred CHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeE--------E----------------
Confidence 34555444444433332 2222 3456789999999999999998765321 0
Q ss_pred CCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEe---cC---CCChHHHHHHHHcCCeE--E--EEecC-
Q psy852 104 NQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYC---SK---EAHSCVEKAAMMAFVRL--K--ILEPD- 172 (891)
Q Consensus 104 ~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~---S~---~~H~Sv~kaa~~~~~~v--~--~V~~d- 172 (891)
....+.|+..+......+.+ +.-.|++ +. ..|-+......+....+ . ..+.|
T Consensus 103 --nv~~~SG~~AN~av~~aL~~---------------pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~ 165 (475)
T PLN03226 103 --NVQPLSGSPANFAVYTALLQ---------------PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE 165 (475)
T ss_pred --ecCcCchHHHHHHHHHHhCC---------------CCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC
Confidence 01124565443333333321 1122444 22 34555444333322221 1 22334
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKT 252 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~ 252 (891)
++|.+|+++|++.+.+.. |-+|++ |.+.+|..-|+++|+++|+++|++++||+|++-.++..
T Consensus 166 ~~g~iD~d~Le~~l~~~~-----pklIv~--~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~----------- 227 (475)
T PLN03226 166 STGLIDYDKLEKKAMLFR-----PKLIIA--GASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAA----------- 227 (475)
T ss_pred CCCCcCHHHHHHHHhhcC-----CeEEEE--ecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccC-----------
Confidence 579999999999987542 444544 34558899999999999999999999999883222100
Q ss_pred ccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccc
Q psy852 253 SFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFD 332 (891)
Q Consensus 253 ~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (891)
T Consensus 228 -------------------------------------------------------------------------------- 227 (475)
T PLN03226 228 -------------------------------------------------------------------------------- 227 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhccc-CccccCCCCCCcccc-
Q psy852 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDY- 410 (891)
Q Consensus 333 ~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~-~~~y~~~~~~~~~~~- 410 (891)
|+ ..+| +..+|.++.++|||+.+|.+ |++++++.. ...+.. ...|... ...++.
T Consensus 228 -----~~------~~~p--------~~~~Div~~t~hK~L~GP~G-g~I~~~~~~--~~~~~~g~~~~~d~--~~~i~~a 283 (475)
T PLN03226 228 -----QE------AASP--------FEYCDVVTTTTHKSLRGPRG-GMIFFRKGP--KPPKGQGEGAVYDY--EDKINFA 283 (475)
T ss_pred -----CC------CCCC--------CCCCeEEEecCcccccCCCc-eEEEEchhh--cccccCCCccHHHH--HHHhccc
Confidence 00 0001 12589999999999999998 777776542 111100 0000000 000110
Q ss_pred cccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 411 RHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 411 ~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
....++++-.. ...++..+++.+-..++.++.++..+++++|++.|.+ .+++++.+
T Consensus 284 ~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G~~l~~~ 340 (475)
T PLN03226 284 VFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KGYKLVTG 340 (475)
T ss_pred cCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CCCEEEcC
Confidence 01123333222 3567788899888888999999999999999999988 78998853
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-09 Score=121.07 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=69.9
Q ss_pred EEEecCCCChHHHHH---HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcC-CcceEEEeec-ccCccccccC---HH
Q psy852 144 MAYCSKEAHSCVEKA---AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG-YIPFFVSTTL-GTTSCCSFDN---LA 215 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka---a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g-~~p~~V~~t~-Gtt~~GavDp---l~ 215 (891)
.|+++..+|+++.+. +...|.+++.++.|++|.+|+++|++.+++....+ ..+.+|+++. =++.+|.+-| ++
T Consensus 82 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~ 161 (353)
T PLN02721 82 EVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTD 161 (353)
T ss_pred eEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHH
Confidence 388888899988873 45678899999999999999999999997532211 1244555544 3556787655 78
Q ss_pred HHHHHHHHcCCceeeeccc
Q psy852 216 EIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 216 ~I~~i~~~~~~~lHvDaA~ 234 (891)
+|.++|+++|+++|+|+|+
T Consensus 162 ~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 162 KVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred HHHHHHHHcCCEEEEEchh
Confidence 9999999999999999987
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-09 Score=117.74 Aligned_cols=271 Identities=13% Similarity=0.126 Sum_probs=162.5
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+.. +. ++ ++++|++++..++.+.+. .+.-.|+++..+|.+...++...|
T Consensus 23 ~~~~la~~~~~-~~--~~--~~~sgt~al~~~l~~l~~------------------~~gd~vl~~~~~~~~~~~~~~~~g 79 (352)
T cd00616 23 FEKAFAEYLGV-KY--AV--AVSSGTAALHLALRALGI------------------GPGDEVIVPSFTFVATANAILLLG 79 (352)
T ss_pred HHHHHHHHhCC-Ce--EE--EECCHHHHHHHHHHHcCC------------------CCCCEEEeCCcchHHHHHHHHHcC
Confidence 33455555543 32 33 456889998888766421 012358899999999999888889
Q ss_pred ceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcCC-------------C
Q psy852 528 VRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQGI-------------E 580 (891)
Q Consensus 528 v~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldGi-------------~ 580 (891)
++++.+++++ ++.+|+++|++++++.+ ..++++...|... |+++ +|+. .
T Consensus 80 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~----~~v~~~~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~ 155 (352)
T cd00616 80 ATPVFVDIDPDTYNIDPELIEAAITPRT----KAIIPVHLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGT 155 (352)
T ss_pred CeEEEEecCCCcCCcCHHHHHHhcCcCC----eEEEEECCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEccc
Confidence 9999999987 79999999999886432 2334445566554 4331 2211 1
Q ss_pred CccEEEEc--CcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 581 YADSFNVN--VNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 581 ~aDSIs~d--~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
..|..+++ +|||+.+|. .|++++++++.+...-.. ...+.... ..+........-+...+..+ +.....+
T Consensus 156 ~~d~~~~S~~~~K~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~aa--~~~~~l~ 228 (352)
T cd00616 156 FGDAGAFSFHPTKNLTTGE-GGAVVTNDEELAERARLLRNHGRDRDR----FKYEHEILGYNYRLSEIQAA--IGLAQLE 228 (352)
T ss_pred CcceeEEcCCCCCCCcccC-ceEEEECCHHHHHHHHHHHHcCCCCCC----CccccceeeeccCcCHHHHH--HHHHHHH
Confidence 13555555 559995443 366666665433221110 00000000 00000011111112222222 2223456
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc---
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS--- 729 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~--- 729 (891)
++.+..++..++++++.+.|+++++++++.++ ...+++|++.+.. ......+.+.|.+.|+.....+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~L~~~gI~~~~~~~~~~ 304 (352)
T cd00616 229 KLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEA----GESRDELIEALKEAGIETRVHYPPLH 304 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcC----CCCHHHHHHHHHHCCCCeeeecCccc
Confidence 77888889999999999999999999987643 2468888886310 12456788889888874221110
Q ss_pred cc--------------------CCeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 730 QE--------------------QNDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 730 ~~--------------------g~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
.. ...++ +++++++|++||++++++|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 305 HQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred cCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 00 01456 88999999999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-09 Score=121.72 Aligned_cols=271 Identities=12% Similarity=0.074 Sum_probs=157.0
Q ss_pred HHHHhhccCCccccccCCCCC-cchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce
Q psy852 451 LFEGKVRRDPRFEISNDVRSS-ASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsg-gsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~ 529 (891)
.+++.+...+.-+++ +++| +|+++..++... ..+. .+..+|+++.-.|-+.+-+ .-.|++
T Consensus 52 ~l~~l~~~~~~~~vv--f~~gs~T~a~~~~~~~l----~~~~------------~~~~~i~~g~~~~~~~~~a-~~~g~~ 112 (355)
T cd00611 52 DLRELLNIPDNYKVL--FLQGGATGQFAAVPLNL----LGDK------------GTADYVVTGAWSAKAAKEA-KRYGGV 112 (355)
T ss_pred HHHHHhCCCCCceEE--EEcCCchHHHHHHHHhc----CCCC------------CeEEEEECCHHHHHHHHHH-HhcCCC
Confidence 444445432334677 6666 888877665553 1000 1234577777777664433 334788
Q ss_pred EEEecCCCCCCc-C-HHHHHHHHHhhhhcCCccE-EEEecCCccc---hhh-----hhcCC----------CCccEEEEc
Q psy852 530 LKILEPDDKNSL-R-GATLRQVMQQDETMGYIPF-FVSTTLGTTS---CYR-----KSQGI----------EYADSFNVN 588 (891)
Q Consensus 530 v~~Vp~d~~G~m-D-~~~Le~aI~~d~~~g~ip~-~VvataGTT~---c~~-----~ldGi----------~~aDSIs~d 588 (891)
++.++++++|.. + ++..+..+.++++ .+.+ ++.+..|+.. +.. .+|++ +..|-...+
T Consensus 113 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--lV~~~h~~t~tG~~~~~i~~~~g~~~~VDa~qs~g~~~idv~~~~~~~ss 190 (355)
T cd00611 113 VVIVAAKEEGKYTKIPDVETWDLAPDAA--YVHYCSNETIHGVEFDEVPDTGGVPLVADMSSNILSRPIDVSKFGVIYAG 190 (355)
T ss_pred cEEEecccccCCCCCCCHhhcCCCCCCC--EEEEeCCcccccEEcceecccCCCeEEEEccccccCCCCCHHHhCEEEee
Confidence 899998766544 5 3333333433211 1111 1112233332 222 24443 223534444
Q ss_pred CcccCCcccccEEEEEeCCcc--chhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHh-hHHHHHH
Q psy852 589 VNKWLLTAFDSSCLWVADRYK--LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS-GLQKYIR 664 (891)
Q Consensus 589 ~HK~L~~P~g~G~llvR~~~~--L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~-G~~~~i~ 664 (891)
+||+++ |.|.|++++|++.. +.+. .+.+..... ...... ..++=. ...+.+..+++.+-.+ |++++.+
T Consensus 191 ~~K~lG-P~G~g~l~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~--~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~ 262 (355)
T cd00611 191 AQKNLG-PAGVTVVIVRKDLLGKARKI---TPSMLNYKT--HADNNS--LYNTPPTFAIYMMGLVLKWLKEQGGVEAMEK 262 (355)
T ss_pred cccccC-CCceEEEEECHHHHhhcccC---CCCcccHHH--HHhcCC--CCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999775 99999999987632 1111 111111000 000000 011111 2246788899999888 7999999
Q ss_pred HHHHHHHHHHHHhccCCCcE-EeCC--Cce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEe
Q psy852 665 RHCELAKLFEGKVRRDPRFE-ISND--VRL-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FEL 739 (891)
Q Consensus 665 ~~~~lA~~L~~~L~~~~~~e-il~~--~~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv 739 (891)
+..++++++.+.|+++|++. ...+ ... .+++|.+.+. .+...+...+.++|++ .+........+ +|+
T Consensus 263 ~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~------~l~~~~~~~~~r~G~~--~~~~~~~~g~vR~S~ 334 (355)
T cd00611 263 RNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE------ELEKEFLKEAEAAGMI--GLKGHRSVGGIRASI 334 (355)
T ss_pred HHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh------hhhHHHHHHHHHCCCc--ccCCCcccCeEEEEc
Confidence 99999999999999998863 2222 134 4699998653 2445666778889986 22222223467 999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei 758 (891)
++++|++|||+++++|+++
T Consensus 335 ~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 335 YNALSLEGVQALADFMKEF 353 (355)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999985
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.7e-10 Score=123.30 Aligned_cols=89 Identities=26% Similarity=0.344 Sum_probs=67.5
Q ss_pred EEEecCCCChHHHHH---HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhc-CCcceEEEeecccCcccc---ccCHHH
Q psy852 144 MAYCSKEAHSCVEKA---AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM-GYIPFFVSTTLGTTSCCS---FDNLAE 216 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka---a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~-g~~p~~V~~t~Gtt~~Ga---vDpl~~ 216 (891)
.|+++..+|+++.++ +.+.|.+++.++.+. +.+|+++|++++++..+. ...+.+|+++..|+. |. .+++++
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~ 150 (338)
T cd06502 73 SVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKA 150 (338)
T ss_pred eEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHH
Confidence 477888999987653 345678999999865 889999999999753211 112456777666664 54 577889
Q ss_pred HHHHHHHcCCceeeeccc
Q psy852 217 IGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 217 I~~i~~~~~~~lHvDaA~ 234 (891)
|+++|+++|+++|+|+|+
T Consensus 151 i~~~~~~~~~~livDea~ 168 (338)
T cd06502 151 ISALAKENGLPLHLDGAR 168 (338)
T ss_pred HHHHHHHcCCeEeechHH
Confidence 999999999999999987
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-10 Score=127.30 Aligned_cols=259 Identities=14% Similarity=0.020 Sum_probs=155.9
Q ss_pred HHHHHHHHHHhc---CCCCCccccC---hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q psy852 31 PSVLADMLSDAI---GCIGFSWAAS---PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPAN 104 (891)
Q Consensus 31 ~~~~~~~l~~~~---n~~~~~~~~~---p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~ 104 (891)
++++..+..... |.....+..+ +.+.++-.++.+.+++++|.+.... -
T Consensus 12 ~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~-------v------------------- 65 (355)
T cd00611 12 EEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYK-------V------------------- 65 (355)
T ss_pred HHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCce-------E-------------------
Confidence 455555444332 5555556666 6778889999999999999854321 1
Q ss_pred CCCcccc-hhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcc-cHHHH
Q psy852 105 QPQSLGG-GVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSL-RGATL 182 (891)
Q Consensus 105 ~~~~~~g-Gt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~i-d~~~L 182 (891)
.+++| ||..-++...++... ..+...|+++...|.+..- +...+.+++.++++++|.. ++.++
T Consensus 66 --vf~~gs~T~a~~~~~~~l~~~------------~~~~~~i~~g~~~~~~~~~-a~~~g~~~~~~~~~~~g~~~~~~~~ 130 (355)
T cd00611 66 --LFLQGGATGQFAAVPLNLLGD------------KGTADYVVTGAWSAKAAKE-AKRYGGVVVIVAAKEEGKYTKIPDV 130 (355)
T ss_pred --EEEcCCchHHHHHHHHhcCCC------------CCeEEEEECCHHHHHHHHH-HHhcCCCcEEEecccccCCCCCCCH
Confidence 23445 665545545544211 0123456666666666433 3334678999998776544 53333
Q ss_pred H-HHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCc
Q psy852 183 R-QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSP 261 (891)
Q Consensus 183 ~-~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~ 261 (891)
+ ..+.++ +-+|++|+.+|.+|.+- . ++++.+|+.+.|||++.
T Consensus 131 ~~~~~~~~------~~lV~~~h~~t~tG~~~--~---~i~~~~g~~~~VDa~qs-------------------------- 173 (355)
T cd00611 131 ETWDLAPD------AAYVHYCSNETIHGVEF--D---EVPDTGGVPLVADMSSN-------------------------- 173 (355)
T ss_pred hhcCCCCC------CCEEEEeCCcccccEEc--c---eecccCCCeEEEEcccc--------------------------
Confidence 2 333322 34899999999999982 2 34455888888888871
Q ss_pred ccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccc
Q psy852 262 IWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAY 341 (891)
Q Consensus 262 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 341 (891)
.++..+++.
T Consensus 174 -------~g~~~idv~---------------------------------------------------------------- 182 (355)
T cd00611 174 -------ILSRPIDVS---------------------------------------------------------------- 182 (355)
T ss_pred -------ccCCCCCHH----------------------------------------------------------------
Confidence 111111100
Q ss_pred cCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCCh
Q psy852 342 AGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 421 (891)
Q Consensus 342 ~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~ 421 (891)
..|-....+||+ ++|.|.|++++|++..-. .-...+.|.... .... .....++-..
T Consensus 183 ------------------~~~~~~ss~~K~-lGP~G~g~l~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~~Tpn~ 238 (355)
T cd00611 183 ------------------KFGVIYAGAQKN-LGPAGVTVVIVRKDLLGK-ARKITPSMLNYK--THAD--NNSLYNTPPT 238 (355)
T ss_pred ------------------HhCEEEeecccc-cCCCceEEEEECHHHHhh-cccCCCCcccHH--HHHh--cCCCCCCChH
Confidence 113233449996 579999999998753211 001112222110 0000 0011223233
Q ss_pred -hHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCcc
Q psy852 422 -RSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRF 462 (891)
Q Consensus 422 -~~l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~ 462 (891)
...++..+++++-.+ |++++.+++.++++++.+.|.+.|++
T Consensus 239 ~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl 281 (355)
T cd00611 239 FAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF 281 (355)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 457889999999998 79999999999999999999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-09 Score=121.75 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHhcCCC--CC--c-c-ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy852 29 SYPSVLADMLSDAIGCI--GF--S-W-AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTP 102 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~--~~--~-~-~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~ 102 (891)
..|.++..+.....+.. +. + + ...+....+|..+.+++++++|.+....
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i------------------------- 91 (416)
T PRK00011 37 VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANV------------------------- 91 (416)
T ss_pred CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceee-------------------------
Confidence 45677766655543221 11 1 1 1345677888889999999999865311
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHH---HHHH--cCCeEEEEecC-CCCc
Q psy852 103 ANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK---AAMM--AFVRLKILEPD-DKNS 176 (891)
Q Consensus 103 ~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~k---aa~~--~~~~v~~V~~d-~~g~ 176 (891)
..++|+......+..+ -. +.-.|+++..+|.+... .... .+.+++.+++| +++.
T Consensus 92 -----~~~sgt~al~~~l~~l--~~-------------~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 151 (416)
T PRK00011 92 -----QPHSGSQANAAVYFAL--LK-------------PGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGL 151 (416)
T ss_pred -----ecCCchHHHHHHHHHh--cC-------------CCCEEEEeccccCCccccccccccccceeeEeecCcCcccCC
Confidence 1234553222212221 11 12237777777765432 1112 24577888887 4689
Q ss_pred ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 177 id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+|+++|++.+++.. |-+|+++ .+..|...|+++|+++|+++|+++++|+|+
T Consensus 152 ~d~~~l~~~i~~~~-----~k~v~~~--~~~~~~~~~~~~I~~la~~~~~~livD~a~ 202 (416)
T PRK00011 152 IDYDEVEKLALEHK-----PKLIIAG--ASAYSRPIDFKRFREIADEVGAYLMVDMAH 202 (416)
T ss_pred cCHHHHHHHHHhcC-----CCEEEEC--CCcCCCccCHHHHHHHHHHcCCEEEEECcc
Confidence 99999999997531 2344443 356788889999999999999999999987
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-09 Score=117.67 Aligned_cols=82 Identities=9% Similarity=0.025 Sum_probs=69.9
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.++..++...|.+++.+++++ ++.+|+++|++.+++. +.+|+++ +.+|.+.|+++|.++|+
T Consensus 60 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~---~~~G~~~~~~~i~~l~~ 130 (352)
T cd00616 60 EVIVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAITPR------TKAIIPV---HLYGNPADMDAIMAIAK 130 (352)
T ss_pred EEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcCcC------CeEEEEE---CCCCCcCCHHHHHHHHH
Confidence 488899999999998877788999999987 7999999999988543 2355544 46899999999999999
Q ss_pred HcCCceeeeccc
Q psy852 223 EFDVWLHVDGAY 234 (891)
Q Consensus 223 ~~~~~lHvDaA~ 234 (891)
++|+++++|+|+
T Consensus 131 ~~~i~li~D~a~ 142 (352)
T cd00616 131 RHGLPVIEDAAQ 142 (352)
T ss_pred HcCCeEEEECCC
Confidence 999999999988
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-08 Score=116.49 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=52.0
Q ss_pred CeEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 164 VRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 164 ~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+++.-++| ++|.+|++++++.+.+.+ | .|+++.+++. +.+.|+++|+++|+++|+++.||+|+
T Consensus 193 ~~~~~y~vd~~~g~iD~d~l~~~~~~~~-----p-lvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH 257 (493)
T PRK13580 193 FHQRSYGVDPDTGLLDYDEIAALAREFK-----P-LILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAH 257 (493)
T ss_pred eeeEecccCcccCccCHHHHHHHHhhcC-----C-EEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECch
Confidence 355666677 569999999999998764 3 5666677777 55779999999999999999999998
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-08 Score=119.68 Aligned_cols=280 Identities=13% Similarity=0.089 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhcCCC-----CCcc-ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q psy852 30 YPSVLADMLSDAIGCI-----GFSW-AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPA 103 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~-----~~~~-~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~ 103 (891)
-|+++..+-+.+.|-. +.-| ..+....++|..+.+...++||.+.... | .|+.
T Consensus 161 S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~-------g--------aNVQ------ 219 (586)
T PLN02271 161 CRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKW-------G--------VNVQ------ 219 (586)
T ss_pred CHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCccccc-------c--------ccee------
Confidence 3555555555554433 2233 3456678999999999999999885421 1 0111
Q ss_pred CCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecC---CCChHHH------HHHHHcCCeEEEEe--cC
Q psy852 104 NQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSK---EAHSCVE------KAAMMAFVRLKILE--PD 172 (891)
Q Consensus 104 ~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~---~~H~Sv~------kaa~~~~~~v~~V~--~d 172 (891)
..+|+..+.+....+ -+ +...|+... -.|.+-. +.+...+..+..++ +|
T Consensus 220 -----p~SGs~AN~aV~~AL--l~-------------PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d 279 (586)
T PLN02271 220 -----PYSCTSANFAVYTGL--LL-------------PGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVN 279 (586)
T ss_pred -----eccHHHHHHHHHHHh--cC-------------CCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccc
Confidence 125654433333333 11 122344433 3455542 11122344445555 75
Q ss_pred -CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCC
Q psy852 173 -DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251 (891)
Q Consensus 173 -~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~ 251 (891)
++|.+|.++|++.+... .|-+|++...+.. ..-|+++|+++|+++|+++++|+|+.-.++
T Consensus 280 ~~~g~IDyd~lek~a~~~-----rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLI------------ 340 (586)
T PLN02271 280 PQTGYIDYDKLEEKALDF-----RPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLV------------ 340 (586)
T ss_pred cccCccCHHHHHHHhhhc-----CCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECccccccc------------
Confidence 67999999999865443 2667777554443 778899999999999999999998821110
Q ss_pred cccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccccccc
Q psy852 252 TSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIF 331 (891)
Q Consensus 252 ~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (891)
T Consensus 341 -------------------------------------------------------------------------------- 340 (586)
T PLN02271 341 -------------------------------------------------------------------------------- 340 (586)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCC-------C
Q psy852 332 DVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHG-------H 404 (891)
Q Consensus 332 ~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~-------~ 404 (891)
++..+. .-+.+||.++.+.|||+.+|.+ |++++|++.. ... .+...... .
T Consensus 341 ----------a~g~~~--------sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~--~~~--~g~~gs~s~~~~~~d~ 397 (586)
T PLN02271 341 ----------AAKECV--------NPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPK--LRK--QGMLLSHGDDNSHYDF 397 (586)
T ss_pred ----------ccCcCC--------CCCcCCcEEEeCCcccCCCCCc-eEEEeccccc--ccc--cCCccccccccccHHH
Confidence 000000 1123589999999999999999 8888876432 111 11111111 0
Q ss_pred CCccccc-ccccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHH
Q psy852 405 EGAIDYR-HWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIF 477 (891)
Q Consensus 405 ~~~~~~~-~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~ 477 (891)
...++.. -.+++++-... ..++-.+++..-...|.++.++.+++|+.|++.|.+ .||+|+. |+|+.-+
T Consensus 398 ~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~-~G~~vv~----ggTdnHl 467 (586)
T PLN02271 398 EEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLR-RKCRLVT----GGTDNHL 467 (586)
T ss_pred HHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-CCCeEee----CCCCcce
Confidence 1112211 12666666554 456778888888888899999999999999999977 4888884 6665433
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.6e-09 Score=119.28 Aligned_cols=264 Identities=15% Similarity=0.108 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecc
Q psy852 435 LSGLQKYIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSK 513 (891)
Q Consensus 435 ~~G~~~ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~ 513 (891)
.......+...++-|| .+++.+++.+.-+|+ +|.|.|+++.....+....+ .+...|++|.
T Consensus 57 ~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIv--ft~~tT~aln~va~~l~~~~----------------~~gdeIv~s~ 118 (405)
T COG0520 57 AHTLAEEATDLYEAAREAVARFLNADSSDEIV--FTRGTTEALNLVARGLGRSL----------------KPGDEIVVSD 118 (405)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhCCCCCCeEE--EeCChhHHHHHHHHHhhhhh----------------cCCCEEEEcc
Confidence 3345666777888888 667777776534777 78899999776655432211 1224699999
Q ss_pred cchHHHHHHHH----HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----h
Q psy852 514 EAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----K 575 (891)
Q Consensus 514 ~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ 575 (891)
.+|+|..-... -.|.+++.+|.+++|.+|.+++++.+++.++ .+ .-.|.+..|+.. |++ .
T Consensus 119 ~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tk--lvais~vSn~tG~~~pv~~I~~la~~~ga~v~ 196 (405)
T COG0520 119 LEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTK--LVALSHVSNVTGTVNPVKEIAELAHEHGALVL 196 (405)
T ss_pred CcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCce--EEEEECccccccccchHHHHHHHHHHcCCEEE
Confidence 99998877664 3488999999999999999999998877543 22 223445566665 444 2
Q ss_pred hcCC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCC---------CCCccccCC
Q psy852 576 SQGI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH---------EGAIDYRHW 634 (891)
Q Consensus 576 ldGi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~---------e~~~~~~~~ 634 (891)
+||. -.+|.+.+++||||++|.|+|+||+|++.. +.+ +++...+. ...+....+
T Consensus 197 VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l--~~l---~P~~~gg~~~~~~~~~~~~~~~~~p~ 271 (405)
T COG0520 197 VDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELL--EEL---EPFLGGGGMIEYVSRDEGVTLAELPL 271 (405)
T ss_pred EECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHH--hhc---CCcccCCCceeeecccccccccCcch
Confidence 5553 248999999999999999999999998732 111 11211111 011222223
Q ss_pred ccccccc--ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC---ceeEEEEEecCCcchhhhhh
Q psy852 635 GIPLSRR--FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV---RLGLVCFRLRSENNLIADQN 709 (891)
Q Consensus 635 ti~~SRr--~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~---~~~iV~Fr~~~~~~~~~d~l 709 (891)
.++.+-+ ..++.+-.+++.+-..|+.++.++..++++++.+.|+++|++++++++ ..++++|.+.+. .
T Consensus 272 rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~-------~ 344 (405)
T COG0520 272 RFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI-------H 344 (405)
T ss_pred hhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC-------C
Confidence 3333333 335677789999999999999999999999999999999999999875 589999999865 6
Q ss_pred HHHHHHHHHhCCcEEEeeccc
Q psy852 710 NRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~s~~ 730 (891)
++.+...|.++|++...+..+
T Consensus 345 ~~dv~~~L~~~gI~vr~g~~c 365 (405)
T COG0520 345 PHDVATLLDEKGIAVRAGHHC 365 (405)
T ss_pred HHHHHHHHHhCCeEEEecccc
Confidence 789999999999765555443
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=121.33 Aligned_cols=286 Identities=15% Similarity=0.156 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecc
Q psy852 435 LSGLQKYIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSK 513 (891)
Q Consensus 435 ~~G~~~ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~ 513 (891)
.-.++..+++.++.|| .+++.|...| -+|+ +|||+||+|+.++..+-.....+. .+-.|++|.
T Consensus 35 ~H~~G~~A~~~ve~AR~~iA~llga~~-~eIi--FTSG~TEsnNlaI~g~~~a~~~~~-------------~~~HIIts~ 98 (386)
T COG1104 35 LHSFGREARKAVEEAREQIAKLLGADP-EEII--FTSGATESNNLAIKGAALAYRNAQ-------------KGKHIITSA 98 (386)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHhCCCC-CeEE--EecCCcHHHHHHHHhhHHhhhccc-------------CCCeEEEcc
Confidence 3477889999999999 8889998888 5888 899999999999987544333221 122599999
Q ss_pred cchHHHHHHHHHc---CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hh
Q psy852 514 EAHSCVEKAAMMA---FVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KS 576 (891)
Q Consensus 514 ~aH~Sv~Kaa~l~---gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~l 576 (891)
.+|.||...++.+ |.++.++|+|++|++|+++|+++|++++ .++ .++++++.|+.+ |++ |+
T Consensus 99 iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T--~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 99 IEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDT--ILVSIMHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred cccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCc--eEEEEEecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 9999999999865 8899999999999999999999999874 344 788899999998 544 55
Q ss_pred cCC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc--cCCCccccCCCCCccccCCcccccccc
Q psy852 577 QGI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV--VDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 577 dGi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~--~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
|.+ -.+|.+|+|+||+.+ |+|+|++|+|+...+.+.+. +|+..+++++++++.+.+++..+
T Consensus 177 DAvQa~Gkipi~~~~~~vD~ls~SaHK~~G-pkGiGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~---- 251 (386)
T COG1104 177 DAVQAVGKIPIDLEELGVDLLSFSAHKFGG-PKGIGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAA---- 251 (386)
T ss_pred ehhhhcCceeccccccCcceEEeehhhccC-CCceEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHH----
Confidence 542 148999999999655 99999999998887777765 56777788777666544444333
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-CCcEEeCCC---ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 643 RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD-PRFEISNDV---RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 643 ~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~-~~~eil~~~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
.+..+.+.....+...+.++|.+.|++. |++.+...+ -.++++|.|++. ..+.+...|+
T Consensus 252 ----------~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-------~gE~ll~~L~ 314 (386)
T COG1104 252 ----------EIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV-------EGESLLLALD 314 (386)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC-------cHHHHHHhcc
Confidence 4667778888889999999999999976 889887654 258999999866 6788999999
Q ss_pred hCCcEEEeeccccCC-------------------eEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMVPASQEQN-------------------DEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 719 ~~G~~~~s~s~~~g~-------------------~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..|++.++++.|..+ ..+ ||++++||++|||++++.++++++
T Consensus 315 ~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~ 376 (386)
T COG1104 315 LAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIK 376 (386)
T ss_pred ccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 999999988866443 467 999999999999999999999984
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-09 Score=117.38 Aligned_cols=157 Identities=21% Similarity=0.298 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q psy852 26 SGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQ 105 (891)
Q Consensus 26 ~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~ 105 (891)
|++..|.++..|.....+. ..|...|.+.++|.. +++++|.+...
T Consensus 4 SD~~~~~m~~a~~~a~~gd--~~Yg~D~~~~~l~~~----i~~l~g~e~a~----------------------------- 48 (290)
T PF01212_consen 4 SDTPTPAMLEAMAAANVGD--DAYGEDPTTARLEER----IAELFGKEAAL----------------------------- 48 (290)
T ss_dssp -SSS-HHEEHHHHHTTSB---CCTTSSHHHHHHHHH----HHHHHTSSEEE-----------------------------
T ss_pred ccCCCHHHHHHHHccccCC--cccCCChhHHHHHHH----HHHHcCCCEEE-----------------------------
Confidence 4445667777774433333 357788999888875 56788887531
Q ss_pred CCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH---HHcCCeEEEEecCCCCcccHHHH
Q psy852 106 PQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---MMAFVRLKILEPDDKNSLRGATL 182 (891)
Q Consensus 106 ~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa---~~~~~~v~~V~~d~~g~id~~~L 182 (891)
|+.+||..+...+..+.+.. -.|++...+|..+...- .+.|.+++.|+.+++|.||+++|
T Consensus 49 --f~~sGT~An~~al~~~~~~~---------------~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l 111 (290)
T PF01212_consen 49 --FVPSGTMANQLALRAHLRPG---------------ESVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDL 111 (290)
T ss_dssp --EESSHHHHHHHHHHHHHHTT---------------EEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHH
T ss_pred --EeCCCChHHHHHHHHHHhcC---------------CceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHH
Confidence 34578876655554444321 13888888998885432 45788999999888899999999
Q ss_pred HHHHHhhhhcCCcceEEEeecccCcc-ccc---cCHHHHHHHHHHcCCceeeeccc
Q psy852 183 RQVMQQDETMGYIPFFVSTTLGTTSC-CSF---DNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 183 ~~~l~~~~~~g~~p~~V~~t~Gtt~~-Gav---Dpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++.+.......-.|.+|+++--|+.. |.+ +.|++|.++|+++|+++|+|||.
T Consensus 112 ~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGAR 167 (290)
T PF01212_consen 112 EAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGAR 167 (290)
T ss_dssp HHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETT
T ss_pred HHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhh
Confidence 99998843322346788888877664 554 67778888999999999999997
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=121.33 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccc
Q psy852 60 TIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVL 139 (891)
Q Consensus 60 ~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~ 139 (891)
.+.-+..|+++|-+..+ |..+||+++|...+..+- .
T Consensus 69 ~eAe~~aA~~fGAd~t~-------------------------------flvnGsT~g~~a~i~a~~-~------------ 104 (417)
T PF01276_consen 69 KEAEELAARAFGADKTF-------------------------------FLVNGSTSGNQAMIMALC-R------------ 104 (417)
T ss_dssp HHHHHHHHHHHTESEEE-------------------------------EESSHHHHHHHHHHHHHT-T------------
T ss_pred HHHHHHHHHhcCCCeEE-------------------------------EEecCchHHHHHHHHHhc-C------------
Confidence 44456789999998764 234677666655443221 1
Q ss_pred cCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC-----CCcccH-----HHHHHHHHhhhhcCCcceEEEeecccCccc
Q psy852 140 LSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-----KNSLRG-----ATLRQVMQQDETMGYIPFFVSTTLGTTSCC 209 (891)
Q Consensus 140 ~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-----~g~id~-----~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~G 209 (891)
+.-.|++...+|-||..++.+.+...++|++.. -+.+++ +.++++|++....+. |.+|++|.- |--|
T Consensus 105 -~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~-~~~vvlt~P-TY~G 181 (417)
T PF01276_consen 105 -PGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKA-PRLVVLTSP-TYYG 181 (417)
T ss_dssp -TTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHC-ESEEEEESS--TTS
T ss_pred -CCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccC-ceEEEEeCC-CCCe
Confidence 223499999999999999999999999988742 235677 999999987643222 456777766 6779
Q ss_pred cccCHHHHHHHHHHcCCceeeeccccCCcccc
Q psy852 210 SFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241 (891)
Q Consensus 210 avDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~ 241 (891)
.+-|+++|+++|+++++.|+||-|||+.+.|+
T Consensus 182 v~~di~~I~~~~h~~~~~llvDEAhGah~~F~ 213 (417)
T PF01276_consen 182 VCYDIKEIAEICHKHGIPLLVDEAHGAHFGFH 213 (417)
T ss_dssp EEE-HHHHHHHHCCTECEEEEE-TT-TTGGCS
T ss_pred EEECHHHHHHHhcccCCEEEEEccccccccCC
Confidence 99999999999999999999999999988764
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-09 Score=105.63 Aligned_cols=89 Identities=26% Similarity=0.177 Sum_probs=70.6
Q ss_pred EEecCCCChHHH-HHHHHcCCeEEEEecCCCCcccHH--HHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 145 AYCSKEAHSCVE-KAAMMAFVRLKILEPDDKNSLRGA--TLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H~Sv~-kaa~~~~~~v~~V~~d~~g~id~~--~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
|+++..+|++.. ..+...+.+++.++.+.++..+.+ .+++.. .+..|.+++++..++.+|..+|+++|+++|
T Consensus 44 v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~ 118 (170)
T cd01494 44 VIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDVAILEELK-----AKPNVALIVITPNTTSGGVLVPLKEIRKIA 118 (170)
T ss_pred EEEeecccceehhhHHHhcCCEEEEeccCCCCccchhhhhhhhcc-----ccCceEEEEEecCcCCCCeEcCHHHHHHHH
Confidence 788888898888 666777889999998876654443 443322 234478999999999999999999999999
Q ss_pred HHcCCceeeeccccCCc
Q psy852 222 KEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~~ 238 (891)
+++++++|+|+|++++.
T Consensus 119 ~~~~~~li~D~a~~~~~ 135 (170)
T cd01494 119 KEYGILLLVDAASAGGA 135 (170)
T ss_pred HHcCCEEEEeccccccc
Confidence 99999999999996544
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-08 Score=116.40 Aligned_cols=163 Identities=14% Similarity=0.089 Sum_probs=97.9
Q ss_pred ccccCCCCC-CHHHHHHHHHHHhcC-----CCCCcc-ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 20 FHAYFPSGN-SYPSVLADMLSDAIG-----CIGFSW-AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 20 ~~~~~~~~~-~~~~~~~~~l~~~~n-----~~~~~~-~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
++..+++.+ ..|.+...+...+.. ..+..+ ...+...++|..+.+++++++|.+....
T Consensus 21 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v--------------- 85 (402)
T cd00378 21 TLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANV--------------- 85 (402)
T ss_pred CeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceee---------------
Confidence 555555444 456666666554321 222222 2455667888889999999999874311
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH-----HHHcCCeEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA-----AMMAFVRLK 167 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka-----a~~~~~~v~ 167 (891)
..++|+......+..+ .. +...|+++..+|.+.... +...|.++.
T Consensus 86 ---------------~~~sgt~a~~~~l~~l--~~-------------~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~ 135 (402)
T cd00378 86 ---------------QPHSGSQANLAVYFAL--LE-------------PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFE 135 (402)
T ss_pred ---------------ecCCcHHHHHHHHHHh--cC-------------CCCEEEEecCccCccccccccccccccceeEE
Confidence 1234553222222222 11 112366666666544222 333455666
Q ss_pred EEecCC---CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 168 ILEPDD---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 168 ~V~~d~---~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.++++. ++.+|+++|++.+.+.. |-+|+.+. +.+|...|+++|+++|+++|+++++|+++
T Consensus 136 ~~~~~~~~~~~~id~~~l~~~i~~~~-----~~~v~~~~--~~~~~~~~~~~I~~l~~~~~~~li~D~a~ 198 (402)
T cd00378 136 SVPYGVDPETGLIDYDALEKMALEFK-----PKLIVAGA--SAYPRPIDFKRFREIADEVGAYLLVDMAH 198 (402)
T ss_pred EecCCcCcccCCcCHHHHHHHHHhCC-----CCEEEecC--cccCCCcCHHHHHHHHHhcCCEEEEEccc
Confidence 666542 68999999999986432 23444433 34578889999999999999999999986
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-08 Score=109.35 Aligned_cols=256 Identities=14% Similarity=0.074 Sum_probs=154.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~mD~~~ 545 (891)
+++|++++|..++.+... +.-.|+++...|++...++.+.|++++.+|.+ .++.+|+++
T Consensus 71 i~~g~~~a~~~~~~~l~~-------------------~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 131 (370)
T TIGR02539 71 VTHGAREGKFAVMHALCK-------------------EGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEG 131 (370)
T ss_pred EECChHHHHHHHHHHhhC-------------------CCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHH
Confidence 357889998776655311 12257888999999998888899999999986 468999999
Q ss_pred HHHHHHhhhhc---CCccEEEEec---CCccc--------hhh----------hhcCC-------CCccEEEEcCcccCC
Q psy852 546 LRQVMQQDETM---GYIPFFVSTT---LGTTS--------CYR----------KSQGI-------EYADSFNVNVNKWLL 594 (891)
Q Consensus 546 Le~aI~~d~~~---g~ip~~Vvat---aGTT~--------c~~----------~ldGi-------~~aDSIs~d~HK~L~ 594 (891)
|+++|++.... +...++++.. .|+.. |++ |..|. ..+|.+..++|||++
T Consensus 132 l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~ 211 (370)
T TIGR02539 132 YGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMA 211 (370)
T ss_pred HHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCccccc
Confidence 99999753221 1112232222 34332 332 11221 247999999999999
Q ss_pred cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc-ccc-ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy852 595 TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI-PLS-RRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672 (891)
Q Consensus 595 ~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti-~~S-Rr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~ 672 (891)
.+.++|+++.+++ .+ +.+.....|.. +..... ..+ ....+..++.++... ...-+..++..+++++
T Consensus 212 ~~g~~G~l~~~~~-~i-~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~al~~~--~~~l~~~~~~~~~~~~ 279 (370)
T TIGR02539 212 ASGPCGVLGMSEE-WE-DIVLRKSRYSP--------VKEVELLGCTSRGAPIVTMMASFPHV--VERVKRWDEEVKKTRW 279 (370)
T ss_pred CCCCEEEEEECHH-HH-hhhcccccCCc--------cceeeeecccccccHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 7777898887644 22 22222111111 000000 011 111233344444321 2222334555677889
Q ss_pred HHHHhccCCCcEEe--CCCceeEEEEEecCCcc--hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHH
Q psy852 673 FEGKVRRDPRFEIS--NDVRLGLVCFRLRSENN--LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDD 747 (891)
Q Consensus 673 L~~~L~~~~~~eil--~~~~~~iV~Fr~~~~~~--~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~ed 747 (891)
|.+.|++. +++++ .+...++|.|+++.... ..-+.....+.+.|.++|++.+.+ .....+ ++++ ..|++|
T Consensus 280 l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~---~~~~~iRis~~-~~t~e~ 354 (370)
T TIGR02539 280 FVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRS---GQTKYFKLSVY-GLTKEQ 354 (370)
T ss_pred HHHHHHhC-CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccC---CcceEEEEEec-CCCHHH
Confidence 99999987 68874 35678899998743210 000223457889999999862222 123356 8874 459999
Q ss_pred HHHHHHHHHHHH
Q psy852 748 LAYKRSFFVRML 759 (891)
Q Consensus 748 Id~li~~L~ei~ 759 (891)
+++++++|+++.
T Consensus 355 i~~l~~~L~~~~ 366 (370)
T TIGR02539 355 VEYVVDSFEEIV 366 (370)
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=113.70 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=63.2
Q ss_pred EEecCCCChHHH-----HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 145 AYCSKEAHSCVE-----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~-----kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
|+++. .|+... .++.+.|.+++.+++ ++.+|+++|+++|.+.++ +++.++.-.+.+|.+.|+++|++
T Consensus 102 Vi~~~-~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~-----ai~~v~~~~~~~g~~~~~~~i~~ 173 (363)
T TIGR01437 102 VVLPK-GHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTA-----AILYIKSHHCVQKSMLSVEDAAQ 173 (363)
T ss_pred EEEEC-ccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhce-----EEEEEecCCCCcCCcCCHHHHHH
Confidence 44543 666543 344667888888876 467999999999987652 34445555668899999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++|+|+|++
T Consensus 174 ~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 174 VAQEHNLPLIVDAAAE 189 (363)
T ss_pred HHHHcCCeEEEECCCC
Confidence 9999999999999993
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=118.23 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=99.3
Q ss_pred HHHHHhcCCC---CCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccch
Q psy852 36 DMLSDAIGCI---GFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGG 112 (891)
Q Consensus 36 ~~l~~~~n~~---~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gG 112 (891)
.|+..+.+.| -..|...|.+..+|. .+++++|. .. .+ |+.+|
T Consensus 15 ~m~eam~~a~~~~~~~YG~D~~~~~~e~----~~ae~~g~-~a---------~~---------------------Fv~sG 59 (342)
T COG2008 15 EMREALAAANAVGDDVYGEDPTTNALEQ----RIAELFGK-EA---------AL---------------------FVPSG 59 (342)
T ss_pred HHHHHHHhccccCCCCCCCCHHHHHHHH----HHHHHhCC-ce---------EE---------------------EecCc
Confidence 4444444444 334566788888876 66778887 32 12 34578
Q ss_pred hHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH---HHcCCeEEEEecCCCCcccHHHHHHHHHhh
Q psy852 113 VIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---MMAFVRLKILEPDDKNSLRGATLRQVMQQD 189 (891)
Q Consensus 113 t~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa---~~~~~~v~~V~~d~~g~id~~~L~~~l~~~ 189 (891)
|..|...+....+. .--|+|-+.+|......- .++++..+.+....+|.|++++++..|..+
T Consensus 60 T~aN~lal~~~~~~---------------~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~ 124 (342)
T COG2008 60 TQANQLALAAHCQP---------------GESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPD 124 (342)
T ss_pred cHHHHHHHHHhcCC---------------CCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCC
Confidence 75544444333321 113888899998886643 234455555555689999999999998863
Q ss_pred -hhcCCcceEEEeecccCccccccCHH---HHHHHHHHcCCceeeeccc
Q psy852 190 -ETMGYIPFFVSTTLGTTSCCSFDNLA---EIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 190 -~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~~i~~~~~~~lHvDaA~ 234 (891)
.-.-..|.++..|.-| +.|++-|++ +|.++|+++|++||+|||-
T Consensus 125 d~~~~~~~~~~~e~~~t-e~GtVy~l~el~~i~~~~k~~~l~LHmDGAR 172 (342)
T COG2008 125 DIHHAPTPLAVLENTAT-EGGTVYPLDELEAISAVCKEHGLPLHMDGAR 172 (342)
T ss_pred CcccCCCceEEEeeccC-CCceecCHHHHHHHHHHHHHhCCceeechHH
Confidence 1223447788888887 899996665 5667899999999999997
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-08 Score=110.78 Aligned_cols=248 Identities=20% Similarity=0.210 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcc
Q psy852 55 CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFV 134 (891)
Q Consensus 55 ~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~ 134 (891)
..+|-.+.-+||+++-|++.-.+. | .+|. ++-++++.+.|..-..
T Consensus 107 ~l~li~~Lq~~L~~ITG~DavsLQ----------P-------------------~AGA--qGE~aGll~Ir~YHe~---- 151 (496)
T COG1003 107 YLELIYELQEWLKEITGMDAVSLQ----------P-------------------NAGA--QGEYAGLLAIRAYHES---- 151 (496)
T ss_pred HHHHHHHHHHHHHHhcCCceeecc----------C-------------------CCCc--chhhHHHHHHHHHHHH----
Confidence 456777888999999999875432 1 1121 3344444444443100
Q ss_pred ccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc-cC
Q psy852 135 DEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-DN 213 (891)
Q Consensus 135 ~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-Dp 213 (891)
.|. ..+-++++.+.+|-...-+|.++|.+|+.|++|++|.+|+++|++++.+.+ ..+.+|.-|| .|.+ .+
T Consensus 152 -rG~-~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~------AalMiTnPsT-~GvFE~~ 222 (496)
T COG1003 152 -RGE-GHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNL------AALMITNPST-LGVFEED 222 (496)
T ss_pred -cCC-CcCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhccce------eEEEeccCcc-cccchhh
Confidence 011 145678999999999999999999999999999999999999999998654 6888888876 5776 78
Q ss_pred HHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccC
Q psy852 214 LAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIH 293 (891)
Q Consensus 214 l~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (891)
|.+|++|.+++|..|-.|||- +|+. .|
T Consensus 223 I~ei~~ivH~~Gg~vY~DGAN------------------------lNA~----------------vG------------- 249 (496)
T COG1003 223 IREICEIVHEAGGQVYYDGAN------------------------LNAI----------------VG------------- 249 (496)
T ss_pred HHHHHHHHHHcCCEEEecCcc------------------------hhhh----------------hc-------------
Confidence 999999999999888888876 1221 00
Q ss_pred CccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCC
Q psy852 294 PFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLL 373 (891)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~ 373 (891)
..-.|--.+|-+-+|.||.+-
T Consensus 250 -----------------------------------------------------------~~rPGd~G~DV~HlNLHKTF~ 270 (496)
T COG1003 250 -----------------------------------------------------------LARPGDMGFDVVHLNLHKTFC 270 (496)
T ss_pred -----------------------------------------------------------cccccccccceEEeecccccc
Confidence 001122357999999999987
Q ss_pred ccCC-----ceEEEEeccccchhhcccCccccCCCCCC---cccccccccCCCCC----hhH-HHHHHHHHHhcHHHHHH
Q psy852 374 TAFD-----SSCLWVADRYKLTSALVVDPLYLQHGHEG---AIDYRHWGIPLSRR----FRS-LKLWFVIRTYGLSGLQK 440 (891)
Q Consensus 374 ~p~~-----~g~~~~r~~~~~~~~~~~~~~y~~~~~~~---~~~~~~~~~~~sr~----~~~-l~~w~~l~~~g~~G~~~ 440 (891)
+|-+ .|=+.++.. |...+.. |. ..+.... ..+.. .++.-++. +.. +..|+.++.+|.+|+++
T Consensus 271 iPHGGGGPG~GPvgVk~~--L~pfLP~-p~-~~~~~~~y~~~~~~~-~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ 345 (496)
T COG1003 271 IPHGGGGPGAGPVGVKAH--LAPFLPG-PV-VYHDVGEYRLDYDGK-KSIGVSAAPYGSASILPIAWAYIRMMGADGLKQ 345 (496)
T ss_pred cCCCCCCCCCCceehHhh--ccccCCC-Cc-ccCCCccccccCCCC-ccceeeccccCcchHHHHHHHHHHHHhHHHHHH
Confidence 7765 445666632 3322211 11 1111100 01111 22222332 233 47899999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCccccc
Q psy852 441 YIRRHCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 441 ii~~~lelAr~l~~~L~~~~~~eVv 465 (891)
.-+..+=+|+|++++|+. .+++.
T Consensus 346 ase~AvLNANYia~rL~~--~y~~~ 368 (496)
T COG1003 346 ASEVAVLNANYIARRLKG--YYPVP 368 (496)
T ss_pred HHHHHHHhHHHHHHHhhh--cCccc
Confidence 999999999999999985 45554
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.5e-08 Score=111.46 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=70.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.|+..++.+.+.+.+.++ .+|+++|++.+.+..+.+..+.+|+.....+.+|.+.|+++|+++|++
T Consensus 124 ~vi~~~~~~~s~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~ 198 (393)
T TIGR01822 124 AIISDALNHASIIDGVRLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADK 198 (393)
T ss_pred EEEEeccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHH
Confidence 488889999999988876555544332 489999999998754333346788888788999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.+|+
T Consensus 199 ~~~~li~De~~~ 210 (393)
T TIGR01822 199 YDALVMVDECHA 210 (393)
T ss_pred cCCEEEEECCcc
Confidence 999999999983
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-08 Score=107.97 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|+++..++...+.+++.++ .+|++.+++.+++.. ....+.+|+++..++.+|.+.|+++|+++|++
T Consensus 87 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~ 160 (349)
T cd06454 87 LIISDSLNHASIIDGIRLSGAKKRIFK-----HNDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKK 160 (349)
T ss_pred EEEEehhhhHHHHHHHHHcCCceEEec-----CCCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccCHHHHHHHHHH
Confidence 377788899999888877677777775 358889998887642 12346788888888999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|++++
T Consensus 161 ~~~~livD~a~~ 172 (349)
T cd06454 161 YGAILFVDEAHS 172 (349)
T ss_pred cCCEEEEEcccc
Confidence 999999999994
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=7e-08 Score=111.96 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=66.1
Q ss_pred EEEecCCCChHHHHHH-H---HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa-~---~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+....+ + -.|.+++.++++ |+++|++.|++.+ .+|++...++.+|.+.|+++|++
T Consensus 105 ~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~~~T------klV~~e~~~np~g~v~Di~~I~~ 173 (433)
T PRK08134 105 HIVASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DIDGWRAAIRPNT------RLLFGETLGNPGLEVLDIPTVAA 173 (433)
T ss_pred EEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHhcCCCC------eEEEEECCCcccCcccCHHHHHH
Confidence 3888889998776655 2 256788888875 8999999997654 46777778899999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++++|+||
T Consensus 174 la~~~gi~livD~t~ 188 (433)
T PRK08134 174 IAHEAGVPLLVDSTF 188 (433)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999988
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.8e-07 Score=102.75 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=67.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
+|++....|.|+..++...+.+++.++. .|+++|++.++... +..+.+|++...++.+|.+.|+++|.++|++
T Consensus 133 ~I~~~~~~H~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~ 205 (406)
T PRK13393 133 VILSDELNHASMIEGIRHSRAEKRIFRH-----NDPADLERKLSDLD--PHRPKLVAFESVYSMDGDIAPIAEICDVAEK 205 (406)
T ss_pred EEEEccchhHHHHHHHHHcCCeEEEeCC-----CCHHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhCHHHHHHHHHH
Confidence 4777788999999988776667766663 37888888776431 1235688888899999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+++++++|.|++
T Consensus 206 ~~~~livDea~~ 217 (406)
T PRK13393 206 HGAMTYLDEVHA 217 (406)
T ss_pred cCCEEEEECCcc
Confidence 988888888874
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-07 Score=105.61 Aligned_cols=273 Identities=9% Similarity=0.001 Sum_probs=148.5
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH-----HHH
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV-----EKA 522 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv-----~Ka 522 (891)
..+++++.+.. + .++ +++|+|++++.++.+.-. +..+..-+..... ....-.|+++. .|+.. ..+
T Consensus 50 ~~~~~a~~~g~-~--~~~--~~~g~t~al~~al~al~~---~Gd~~~~~~~~~s-~~~~~eVi~~~-~~~~~~~~~~~~~ 119 (363)
T TIGR01437 50 TGEYIANLLGV-E--DAV--IVSSASAGIAQSVAAVIT---RGNRYLVENLHDS-KIEVNEVVLPK-GHNVDYGAPVETM 119 (363)
T ss_pred HHHHHHHhhCC-C--eEE--EEcCHHHHHHHHHHHHhc---CCCcchhhccccc-ccccceEEEEC-ccchhcCCchHHH
Confidence 44455555543 2 334 688999999998877521 0000000000000 01111344544 56543 344
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCCC------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGIE------ 580 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi~------ 580 (891)
+.+.|.+++.++. ++.+|+++|+++|.+.++ ..++|+. ..|+.. |+++ +|+..
T Consensus 120 ~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~---ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~~ 194 (363)
T TIGR01437 120 VRLGGGKVVEAGY--ANECSAEQLEAAITEKTA---AILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQK 194 (363)
T ss_pred HHhcCCeEEEEcC--CCCCCHHHHHHhcChhce---EEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchHH
Confidence 4678888888876 457999999999987643 2222322 134332 4432 33321
Q ss_pred ----CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH
Q psy852 581 ----YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL 656 (891)
Q Consensus 581 ----~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~ 656 (891)
++|.+.+|+|||+.+|. .|+++.+ ++.+.. ... + ..+. ...++.+. ...+.+..++..+-.
T Consensus 195 ~~~~g~D~~~~S~~K~l~gp~-~G~l~~~-~~~i~~-~~~---~-~~~~-------~~~~~~~~-~~~~gl~aAl~~~~~ 259 (363)
T TIGR01437 195 YYRLGADLVIYSGAKAIEGPT-SGLVLGK-KKYIEW-VKL---Q-SKGI-------GRAMKVGK-ENILGLTAALEQYLS 259 (363)
T ss_pred HHHcCCCEEEEeCCcccCCCc-eEEEEEc-HHHHHH-HHh---c-cCCC-------cceeccCH-HHHHHHHHHHHHHHc
Confidence 37999999999999998 7876654 333322 110 0 0000 00000000 112455556665543
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc-EEEeec
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-------RLGLVCFRLRSENNLIADQNNRKLLEDINASGR-LHMVPA 728 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~-~~~s~s 728 (891)
.+. +.++...+.++++.++|+++++++++.++ ....|.|..... +....++.+.|.+.|. ++....
T Consensus 260 ~~~-~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~-----g~~~~~l~~~L~~~~~~I~~r~~ 333 (363)
T TIGR01437 260 TGK-ESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESEL-----GMTAADVVQALRQGEPAIYTRGY 333 (363)
T ss_pred cCc-ccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCC-----CCCHHHHHHHHhcCCCCEEEeee
Confidence 332 33334445677899999999999887432 124566665322 2346788999987774 222221
Q ss_pred cccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 729 SQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 729 ~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
......+ +.+.. ++++|+|.++++|+++
T Consensus 334 -~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 334 -KANEGIIEIDPRS-VTGGQLDIIVERIREI 362 (363)
T ss_pred -eecCCeEEEEeec-CCHHHHHHHHHHHHHh
Confidence 1122233 55543 5699999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-06 Score=100.78 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=66.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
+|++....|.|+..++...+..+..++. .|+++|++.++... ...+.+|++...++.+|.+-|+++|.++|++
T Consensus 133 ~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~ 205 (402)
T TIGR01821 133 VIFSDELNHASMIEGIRHSGAEKFIFRH-----NDVAHLEKLLQSVD--PNRPKIIAFESVYSMDGDIAPIEEICDLADK 205 (402)
T ss_pred EEEEcchHhHHHHHHHHHcCCeEEEECC-----CCHHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccCHHHHHHHHHH
Confidence 4666667899998888766666655543 37788888886431 1135688888899999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.|++
T Consensus 206 ~~~~livDea~~ 217 (402)
T TIGR01821 206 YGALTYLDEVHA 217 (402)
T ss_pred cCCEEEEeCccc
Confidence 998888888884
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.9e-08 Score=111.60 Aligned_cols=82 Identities=13% Similarity=0.034 Sum_probs=63.7
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+....+ ...|.++++++ +.. |+++|+++|++.+ -+|++..-+|.+|.+.||++|++
T Consensus 110 ~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~~---d~e~l~~~l~~~t------k~V~~e~~~Np~~~v~di~~I~~ 179 (437)
T PRK05613 110 HIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-NPD---DPESWQAAVQPNT------KAFFGETFANPQADVLDIPAVAE 179 (437)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCeEEEEEC-CCC---CHHHHHHhCCccC------eEEEEECCCCCCCcccCHHHHHH
Confidence 4888899999885433 23567888887 332 8999999887653 24555566677889999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+.++||+|++
T Consensus 180 la~~~gi~livD~t~a 195 (437)
T PRK05613 180 VAHRNQVPLIVDNTIA 195 (437)
T ss_pred HHHHcCCeEEEECCCc
Confidence 9999999999999984
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-08 Score=112.67 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=146.4
Q ss_pred ceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCcCHHHHHH-HHHhhhhcCCccEEEE--ecCCccc--hhh-----
Q psy852 506 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQ-VMQQDETMGYIPFFVS--TTLGTTS--CYR----- 574 (891)
Q Consensus 506 ~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~mD~~~Le~-aI~~d~~~g~ip~~Vv--ataGTT~--c~~----- 574 (891)
-.+|..+...|-+.+-+-+++ .. ..++.+. .|..+..++++ +|+++. ....++- ++.|... -.+
T Consensus 94 ~l~i~~G~fg~r~~~~a~~~g-~~-~~~~~~~~~g~~~~~~~~~~~l~~~~---~~V~~th~eTstGv~~~~i~~i~g~l 168 (360)
T PRK05355 94 ADYVDTGSWSKKAIKEAKKYG-EV-NVAASSEDDGFTYIPPLDEWQLSDDA---AYVHYTSNETIDGTEFHELPDTGDVP 168 (360)
T ss_pred EEEEECCHHHHHHHHHHHHhC-Cc-eEEecccccCCCCCCChhhccCCCCC---CEEEEccCCCcceEecCcccccCCCc
Confidence 456788888888866555665 33 5566554 67777767666 665432 1122221 1223332 000
Q ss_pred -hhcCC----------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCccccccc-
Q psy852 575 -KSQGI----------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRR- 641 (891)
Q Consensus 575 -~ldGi----------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr- 641 (891)
.+|++ +..|.+.+++||+++ |-|.|+++++++.. .. +.. ...|+.-..... .....++=.
T Consensus 169 ~vVDavss~g~~~idv~~~d~~~~ssqK~lg-P~Glg~l~~s~~~l-~~-~~~~~~~~~~~~~~~~----~~~~~~Tp~~ 241 (360)
T PRK05355 169 LVADMSSDILSRPIDVSKFGLIYAGAQKNIG-PAGLTIVIVREDLL-GR-ALPSIPSMLDYKTHAD----NDSMYNTPPT 241 (360)
T ss_pred EEEEcCccccCccCCHHHccEEEEecccccc-CCceEEEEECHHHH-hh-cccCCChHHHHHHHHh----cCCccCCCcH
Confidence 13332 335899999999986 99999999998742 11 111 112222110000 000011111
Q ss_pred ccchHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--Cce-eEEEEEecCCcchhhhhhHHHHHHHH
Q psy852 642 FRSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISND--VRL-GLVCFRLRSENNLIADQNNRKLLEDI 717 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L 717 (891)
.....+-.+|+.+-.+ |++++.++..++++++.+.|++++.+..+.+ ..+ .+++|++++. .+...+...+
T Consensus 242 ~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~~ 315 (360)
T PRK05355 242 FAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE------ELDKKFLAEA 315 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh------HHHHHHHHHH
Confidence 2235677888888888 8999999999999999999999874444333 234 5799998642 2335666788
Q ss_pred HhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 718 NASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 718 ~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.++|+....+. ...+.+ +|+.+++|.+|||+++++|+++.
T Consensus 316 ~~~Gi~~~~~~--~~~g~vRiS~~~~nt~eei~~l~~~l~~~~ 356 (360)
T PRK05355 316 KAAGLVGLKGH--RSVGGMRASIYNAMPLEGVQALVDFMKEFE 356 (360)
T ss_pred HHCCCcccCCC--CccCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 88998842222 223456 99999999999999999999865
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-07 Score=108.28 Aligned_cols=158 Identities=10% Similarity=0.084 Sum_probs=96.5
Q ss_pred ccccCCCCCCHHHHHHH-HHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccc
Q psy852 20 FHAYFPSGNSYPSVLAD-MLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIED 98 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~ 98 (891)
|.+...-..+ +++-.. |..+..+- .+|..+|...++|..+ ++++|.+.-
T Consensus 40 ~iDLltDsgT-~aMs~~q~a~~~~GD--e~yag~~s~~~lE~~v----a~~~G~~~a----------------------- 89 (450)
T TIGR02618 40 YIDLLTDSGT-NAMSDKQWAGLMMGD--EAYAGSRNFYHLERTV----RELYGFKYV----------------------- 89 (450)
T ss_pred EEEcccCCCc-HHHHHHHHHHhhhcc--hhhcCCCcHHHHHHHH----HHHHCCCeE-----------------------
Confidence 4454433333 444333 44444443 3588899999999865 456677642
Q ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH-HHcCCeEEEEecC-----
Q psy852 99 YMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MMAFVRLKILEPD----- 172 (891)
Q Consensus 99 ~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa-~~~~~~v~~V~~d----- 172 (891)
..+++|+..-++ + .+.. ++. .+ .| +...|++...+. ...|...+-|++|
T Consensus 90 --------v~v~sGT~Al~l--l--~~l~------l~p----GD-eV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~ 144 (450)
T TIGR02618 90 --------VPTHQGRGAENL--L--SQIA------IKP----GD-YV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDA 144 (450)
T ss_pred --------EEcCCHHHHHHH--H--HHhC------CCC----cC-EE--CCceeHHHHHHHHHhCCeEEEeeeccccccc
Confidence 135677643232 1 1111 011 11 23 557888887774 5556555555433
Q ss_pred -----CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc-ccc---cCHHHHHHHHHHcCCceeeeccc
Q psy852 173 -----DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-CSF---DNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 173 -----~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~-Gav---Dpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+|.||+++|++.|++.. ..+.+ +|+++..++.. |.. .++.+|.++|++||++||.|||.
T Consensus 145 ~~~~p~~GniD~~~Le~aI~~~~-~~~~~-lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR 213 (450)
T TIGR02618 145 QLNIPFKGNVDLKKLQKLIDEVG-ADKIP-YICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATR 213 (450)
T ss_pred ccCCCCCCCcCHHHHHHHhcccc-CcccC-ceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 369999999999998532 12334 44444444544 666 78999999999999999999998
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.4e-08 Score=108.38 Aligned_cols=279 Identities=10% Similarity=0.031 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCccccccCCC-CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccch
Q psy852 438 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH 516 (891)
Q Consensus 438 ~~~ii~~~lelAr~l~~~L~~~~~~eVv~~it-sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH 516 (891)
|.++.+...+..+++.+ .-+..+++ ++ ++||+++-.++...-. .. ..-.++..+..+|
T Consensus 35 f~~~~~~~~~~l~~l~~---~~~~~~v~--~~~gsgT~a~ea~~~nl~~----~~------------~~~l~i~~G~fg~ 93 (349)
T TIGR01364 35 FEAVANEAESDLRELLN---IPDNYEVL--FLQGGATGQFAAVPLNLLA----EG------------KVADYIVTGAWSK 93 (349)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCceEE--EEcCCchHHHHHHHHhcCC----CC------------CeEEEEECCHHHH
Confidence 44555555555555444 22234565 44 4488776655443211 00 1235677888888
Q ss_pred HHHHHHHHHcCceEEEecCCCCC----CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc---hhh-----hhcCC--
Q psy852 517 SCVEKAAMMAFVRLKILEPDDKN----SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS---CYR-----KSQGI-- 579 (891)
Q Consensus 517 ~Sv~Kaa~l~gv~v~~Vp~d~~G----~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~---c~~-----~ldGi-- 579 (891)
-..+-+-+++. +..++.++.+ ..|++.++ ++. ....++++ .+.|... +.. .+|++
T Consensus 94 r~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~v~~th~ETstGv~~~~l~~~~~~l~iVDavss 165 (349)
T TIGR01364 94 KAAKEAKKYGV--VNVVASGKEGNYTKIPDPSTWE--ISE----DAAYVHYCANETIHGVEFRELPDVKNAPLVADMSSN 165 (349)
T ss_pred HHHHHHHHhCC--cEEEeccccCCCCCCCCHHhcC--CCC----CCCEEEEcCCCCcccEecceecccCCCeEEEEcccc
Confidence 88655555544 6666654333 35555544 111 11122222 1223331 211 24442
Q ss_pred --------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHH
Q psy852 580 --------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFV 650 (891)
Q Consensus 580 --------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~ 650 (891)
+..|.+.+++||+++ |-|.|+++++++.. ...-...+.|..-.. ........++=. .....+..+
T Consensus 166 ~g~~~id~~~~d~~~~ssqK~lg-P~Glg~l~~s~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~Tp~~~~i~al~~a 239 (349)
T TIGR01364 166 ILSRPIDVSKFGLIYAGAQKNIG-PAGLTVVIVRKDLL-GRASRITPSMLNYKI----HAENDSMYNTPPTFAIYVSGLV 239 (349)
T ss_pred ccCccCCHHHccEEEEecccccC-CCceEEEEECHHHH-hhcccCCCCcchHHH----HHhcCCCCCCCcHHHHHHHHHH
Confidence 335899999999986 99999999998732 111011112211000 000000011111 223567788
Q ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CC--ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE
Q psy852 651 IRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISN-DV--RL-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHM 725 (891)
Q Consensus 651 L~~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~--~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~ 725 (891)
|+.+-.+ |++++.++..++++++.+.|++.+++.... ++ .+ .+++|.+++. .+..++...+.++|++..
T Consensus 240 l~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~~~~~Gi~~~ 313 (349)
T TIGR01364 240 FKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE------ELEKRFLKEAEERGLVSL 313 (349)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh------hHhHHHHHHHHHCCCccc
Confidence 8888888 799999999999999999999998876553 22 33 5789998643 233566678888998422
Q ss_pred eeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 726 VPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 726 s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+.. ....+ +|+.+++|.+|||+++++|+++.
T Consensus 314 ~~~~--~~g~vRvS~~~~nt~edid~l~~al~~~~ 346 (349)
T TIGR01364 314 KGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFQ 346 (349)
T ss_pred CCcc--ccCeeEEECcCCCCHHHHHHHHHHHHHHH
Confidence 2222 12356 99999999999999999999865
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-08 Score=112.59 Aligned_cols=268 Identities=18% Similarity=0.190 Sum_probs=196.0
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+...+. .++ +++|++++|..++.+++.... .++..|+++..+|+++.+++...
T Consensus 63 ~~~~~la~~~g~~~~-~~~--~~~ggt~a~~~a~~~~~~~~~---------------~~~~~vl~~~~~h~s~~~~~~~~ 124 (371)
T PRK13520 63 EAVEMLGELLHLPDA-YGY--ITSGGTEANIQAVRAARNLAK---------------AEKPNIVVPESAHFSFDKAADML 124 (371)
T ss_pred HHHHHHHHHhCCCCC-CeE--EecCcHHHHHHHHHHHHhhcc---------------CCCceEEecCcchHHHHHHHHHc
Confidence 555666766654332 333 578999999999888765311 02346899999999999999888
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc--------hhh-----hhcC----------
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS--------CYR-----KSQG---------- 578 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~--------c~~-----~ldG---------- 578 (891)
|++++.||++.++.+|+++|+++|++++ ..|+. ..|+.. |++ ++|+
T Consensus 125 g~~~~~v~~~~~~~~d~~~l~~~i~~~~------~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~ 198 (371)
T PRK13520 125 GVELRRAPLDDDYRVDVKAVEDLIDDNT------IGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFL 198 (371)
T ss_pred CceEEEecCCCCCcCCHHHHHHHHhhCC------EEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhh
Confidence 9999999999999999999999998642 22222 234433 433 1222
Q ss_pred ---------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHH
Q psy852 579 ---------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLW 648 (891)
Q Consensus 579 ---------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW 648 (891)
...+|++++++|||+++|.++|++++++++.+. .+.....|+.... .+...++|+ ...+.+|
T Consensus 199 ~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~-~l~~~~~~~~~~~-------~~~~~gt~~~~~~~~~~ 270 (371)
T PRK13520 199 DDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLD-ALAVDTPYLTSKK-------QATLTGTRSGAGVAATY 270 (371)
T ss_pred cCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHH-hhcccCccccCCC-------CcceEeeccChHHHHHH
Confidence 246899999999999999999999998775432 2332334443221 122344554 4467899
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
.+++.++.+|+++..++..+++++|.+.|++. +++++.++..++|+|.+. ..+++.++|.++|+.... +
T Consensus 271 ~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~---------~~~~v~~~L~~~gi~v~~-~ 339 (371)
T PRK13520 271 AVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLNIVAFDDP---------NPDEVREKLRERGWRVSV-T 339 (371)
T ss_pred HHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceEEEEecC---------CHHHHHHHHHHCCceecc-C
Confidence 99999999999999999999999999999987 888555667889999875 246788888888976432 2
Q ss_pred cccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 SQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 ~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
....++ +++++++|++||+++++.|+++.
T Consensus 340 --~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 340 --RCPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred --CCCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 233456 99999999999999999998764
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=115.80 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=82.6
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CC---Cccc-----HHHHHHHHHhhh----hcCCcceEEEeecccCccc
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DK---NSLR-----GATLRQVMQQDE----TMGYIPFFVSTTLGTTSCC 209 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~---g~id-----~~~L~~~l~~~~----~~g~~p~~V~~t~Gtt~~G 209 (891)
.|++...+|-|+..++.+.+...++|++. +. |.++ ++.++++|++.. +++.+|..|++|.. |--|
T Consensus 247 ~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~G 325 (755)
T PRK15029 247 VVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDG 325 (755)
T ss_pred EEEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcc
Confidence 48999999999999999999999998753 22 3455 999999997632 23456778888877 6779
Q ss_pred cccCHHHHHHHHHHcCCceeeeccccCCccccCCC
Q psy852 210 SFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEF 244 (891)
Q Consensus 210 avDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~ 244 (891)
.+-|+++|+++|++++++||||-|||+++.|++.+
T Consensus 326 v~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~ 360 (755)
T PRK15029 326 VCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY 360 (755)
T ss_pred eeeCHHHHHHHHHhcCCeEEEECccccccccCccc
Confidence 99999999999999999999999999998876643
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-07 Score=104.82 Aligned_cols=252 Identities=19% Similarity=0.153 Sum_probs=167.6
Q ss_pred ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccc
Q psy852 50 AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKK 129 (891)
Q Consensus 50 ~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~ 129 (891)
..+|.+..+-.++++.|.++++-.+.+.. ..+++||..--+++.++..
T Consensus 31 h~s~~F~~~~~~~~~~L~~v~~t~~~~~~----------------------------ll~gsGt~amEAav~sl~~---- 78 (383)
T COG0075 31 HRSPDFVGIMKEVLEKLRKVFGTENGDVV----------------------------LLSGSGTLAMEAAVASLVE---- 78 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCcEE----------------------------EEcCCcHHHHHHHHHhccC----
Confidence 57899999999999999999997743211 1234454322222222211
Q ss_pred cCCccccccccCCeEEEecCCCChH--HHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCc
Q psy852 130 IHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS 207 (891)
Q Consensus 130 ~~~~~~~g~~~~~~~v~~S~~~H~S--v~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~ 207 (891)
+...|++....=|+ +...+...+.+++.|.+...-.+|+++++++|+++.. .-.|.+++.-|.
T Consensus 79 -----------pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~----~~~V~~vH~ETS 143 (383)
T COG0075 79 -----------PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPD----IKAVAVVHNETS 143 (383)
T ss_pred -----------CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCC----ccEEEEEeccCc
Confidence 11123333333333 3344455677999999887778999999999995531 239999999999
Q ss_pred cccccCHHHHHHHHHHcCCceeeec--cccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHH
Q psy852 208 CCSFDNLAEIGPVAKEFDVWLHVDG--AYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQA 285 (891)
Q Consensus 208 ~GavDpl~~I~~i~~~~~~~lHvDa--A~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (891)
||..+|+++|+++|++||..+.||| ++||-
T Consensus 144 TGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~------------------------------------------------ 175 (383)
T COG0075 144 TGVLNPLKEIAKAAKEHGALLIVDAVSSLGGE------------------------------------------------ 175 (383)
T ss_pred ccccCcHHHHHHHHHHcCCEEEEEecccCCCc------------------------------------------------
Confidence 9999999999999999999999999 55442
Q ss_pred HhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEE
Q psy852 286 ISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFN 365 (891)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~ 365 (891)
++++|- + .+|-+.
T Consensus 176 ------------------------------------------------~~~vd~-----------w--------giDv~i 188 (383)
T COG0075 176 ------------------------------------------------PLKVDE-----------W--------GIDVAI 188 (383)
T ss_pred ------------------------------------------------ccchhh-----------c--------CccEEE
Confidence 222221 0 358888
Q ss_pred EeCCCcCCccCCceEEEEeccccchhhcccC-c-cccCCCCC-CcccccccccCCCCChh-HHHHHHHHHHhcHHHHHHH
Q psy852 366 VNVNKWLLTAFDSSCLWVADRYKLTSALVVD-P-LYLQHGHE-GAIDYRHWGIPLSRRFR-SLKLWFVIRTYGLSGLQKY 441 (891)
Q Consensus 366 ~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~-~-~y~~~~~~-~~~~~~~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~i 441 (891)
...+|.+.+|-+-|++.+.++..- ...... + -|+.-... ..++- ....+.+-+.. -.++-.+++.+-.+|++++
T Consensus 189 tgSQK~l~~PPGla~v~~S~~a~e-~~~~~~~~~~ylDL~~~~~~~~~-~~~~p~Tppv~~i~aL~~al~~i~~EGle~r 266 (383)
T COG0075 189 TGSQKALGAPPGLAFVAVSERALE-AIEERKHPSFYLDLKKWLKYMEK-KGSTPYTPPVNLIYALREALDLILEEGLEAR 266 (383)
T ss_pred ecCchhccCCCccceeEECHHHHH-HHhcCCCCceeecHHHHHHHHhh-cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 888999999999999999876322 112222 2 23321110 00100 00111111222 3567788999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcccccc
Q psy852 442 IRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 442 i~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
.++..++++++.+.+.+ -|++++.
T Consensus 267 ~~RH~~~~~a~r~~~~a-lGl~~~~ 290 (383)
T COG0075 267 IARHRRLAEALRAGLEA-LGLELFA 290 (383)
T ss_pred HHHHHHHHHHHHHHHHH-cCCcccc
Confidence 99999999999999987 4677775
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-07 Score=107.32 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=101.3
Q ss_pred cccCCCCC-CHHHHHHHHHHHhcCCCCCcc------ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 21 HAYFPSGN-SYPSVLADMLSDAIGCIGFSW------AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~l~~~~n~~~~~~------~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
+..+++.+ ..|.+...+...+.+..+..+ .+.|...++|..+.+.+++++|-+....
T Consensus 31 ~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv---------------- 94 (416)
T PRK13034 31 LELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANV---------------- 94 (416)
T ss_pred eeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEE----------------
Confidence 34444443 447777777777544443322 1357788999989999999998764310
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHH-HHHHHH--cCCeE--EE
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCV-EKAAMM--AFVRL--KI 168 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv-~kaa~~--~~~~v--~~ 168 (891)
++++|+..+...+..+ -. +.-.|++....|.+. ...+.. .+..+ ..
T Consensus 95 --------------~~~SG~~A~~~~l~al--~~-------------~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~ 145 (416)
T PRK13034 95 --------------QPHSGSQANGAVYLAL--LK-------------PGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQ 145 (416)
T ss_pred --------------ecCCcHHHHHHHHHHh--cC-------------CCCEEEEcCccceeeeecCCcceeccceeeeEE
Confidence 1346654433333332 11 223488888899873 222221 12122 34
Q ss_pred EecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 169 LEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 169 V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
.++|. .+.+|+++|++.+.... |-+|+.+ ++..|..-|+.+|.++|+++|+++++|+|++
T Consensus 146 ~~~~~~~~~~d~~~le~~l~~~~-----~klVi~~--~~~~g~~~dl~~l~~la~~~g~~livD~Aha 206 (416)
T PRK13034 146 YGVDRLTGLIDYDEVEELAKEHK-----PKLIIAG--FSAYPRELDFARFREIADEVGALLMVDMAHI 206 (416)
T ss_pred cccccccCCcCHHHHHHHHhhcC-----CeEEEEC--CCccccccCHHHHHHHHHHcCCEEEEeCccc
Confidence 44443 46799999999886531 3455433 3456888899999999999999999999883
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-07 Score=105.47 Aligned_cols=254 Identities=11% Similarity=0.083 Sum_probs=148.8
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEe---cc---cchHHHHHHHHHcCce--EE--EecCC-CC
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYC---SK---EAHSCVEKAAMMAFVR--LK--ILEPD-DK 538 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~---S~---~aH~Sv~Kaa~l~gv~--v~--~Vp~d-~~ 538 (891)
++|+.+|+.++.+.-. +.-.|++ +. ..|-++..++.+.... +. +.+.+ ++
T Consensus 107 ~SG~~AN~av~~aL~~-------------------pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~ 167 (475)
T PLN03226 107 LSGSPANFAVYTALLQ-------------------PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDEST 167 (475)
T ss_pred CchHHHHHHHHHHhCC-------------------CCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCC
Confidence 6778898887766411 1123444 22 4455555444443332 22 23333 67
Q ss_pred CCcCHHHHHHHHHhhhhcCCcc-EEEE-ec-CCccc--------hhh----------hhcC----------CCCccEEEE
Q psy852 539 NSLRGATLRQVMQQDETMGYIP-FFVS-TT-LGTTS--------CYR----------KSQG----------IEYADSFNV 587 (891)
Q Consensus 539 G~mD~~~Le~aI~~d~~~g~ip-~~Vv-at-aGTT~--------c~~----------~ldG----------i~~aDSIs~ 587 (891)
|.+|+++|++++.+.. | ++|+ .+ .|... |++ |.-| ++.+|.++.
T Consensus 168 g~iD~d~Le~~l~~~~-----pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~ 242 (475)
T PLN03226 168 GLIDYDKLEKKAMLFR-----PKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTT 242 (475)
T ss_pred CCcCHHHHHHHHhhcC-----CeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEe
Confidence 9999999999987531 2 2233 11 12111 333 2112 247999999
Q ss_pred cCcccCCcccccEEEEEeCCccchhhhccC-C---CccccCCCCCccc-cCCcccccc-cccchHHHHHHHHHHHhhHHH
Q psy852 588 NVNKWLLTAFDSSCLWVADRYKLTSALVVD-P---LYLQHGHEGAIDY-RHWGIPLSR-RFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 588 d~HK~L~~P~g~G~llvR~~~~L~~~l~~~-~---~Yl~~~~e~~~~~-~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~ 661 (891)
+.||||.+|.| |++++++. .... +... . +|.. ..+. ....++++= ......+..+++.+-..++++
T Consensus 243 t~hK~L~GP~G-g~I~~~~~-~~~~-~~~g~~~~~d~~~-----~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~ 314 (475)
T PLN03226 243 TTHKSLRGPRG-GMIFFRKG-PKPP-KGQGEGAVYDYED-----KINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKA 314 (475)
T ss_pred cCcccccCCCc-eEEEEchh-hccc-ccCCCccHHHHHH-----HhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHH
Confidence 99999999999 78888654 2211 1100 0 1100 0000 001122221 122456677788777778888
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec------cccCCe
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA------SQEQND 734 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s------~~~g~~ 734 (891)
+.++..+++++|.+.|++ .++.++.+ .+.+++.+.+.+. +-...++.+.|.+.|+..-... ......
T Consensus 315 ~~~~~~~na~~L~~~L~~-~G~~l~~~~t~~hi~lv~~~~~-----gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~g 388 (475)
T PLN03226 315 YQKQVKANAAALANRLMS-KGYKLVTGGTDNHLVLWDLRPL-----GLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGG 388 (475)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCEEEcCCCCCCEEEEEccCC-----CCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCC
Confidence 899999999999999998 69999864 3356766666543 2234567777888887732221 111111
Q ss_pred EEE----EecCCCCHHHHHHHHHHHHHHHHH
Q psy852 735 EVF----ELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 735 ~l~----sv~~~tT~edId~li~~L~ei~~~ 761 (891)
+.+ .++...+++|++++.+.|.+++..
T Consensus 389 iRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 389 VRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred cccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 124 256678999999999999988854
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-07 Score=108.26 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=66.3
Q ss_pred EEecCCCChHHHHHH-HHcCCeEEEEecCC----------CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccc----
Q psy852 145 AYCSKEAHSCVEKAA-MMAFVRLKILEPDD----------KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCC---- 209 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa-~~~~~~v~~V~~d~----------~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~G---- 209 (891)
|+.+ ..||....+. .+.|.+++.+++++ .|.+|+++|++.+.+... ..+.+|+++.-+|.+|
T Consensus 119 Vii~-~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~--~~tk~Ivl~~p~NptGG~v~ 195 (460)
T PRK13238 119 VVPS-NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA--ENVPFIVMTITNNSAGGQPV 195 (460)
T ss_pred EEcc-CCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCC--CceeEEEEecCCCCCCCcCC
Confidence 4444 4487776665 56788999999863 255999999999975310 1245888888888887
Q ss_pred cccCHHHHHHHHHHcCCceeeeccc
Q psy852 210 SFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 210 avDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
..+++++|+++|+++|++|+.|+|+
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Daa~ 220 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDAAR 220 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECcc
Confidence 3566889999999999999999977
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-06 Score=98.64 Aligned_cols=86 Identities=10% Similarity=0.179 Sum_probs=68.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.+++|+ ++.+|+++|++.+++.. ...+-+|+.+ +.+|...|+++|+++|+
T Consensus 71 ~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~t~~v~~~---~~~G~~~~~~~i~~l~~ 145 (380)
T TIGR03588 71 RVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAK--GKLPKAIVPV---DFAGKSVDMQAIAALAK 145 (380)
T ss_pred EEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhccc--CCCceEEEEe---CCCCccCCHHHHHHHHH
Confidence 488888899999888877888999999974 67899999999997421 0113344433 34799999999999999
Q ss_pred HcCCceeeeccc
Q psy852 223 EFDVWLHVDGAY 234 (891)
Q Consensus 223 ~~~~~lHvDaA~ 234 (891)
++|++|.+|+|+
T Consensus 146 ~~~~~lI~D~a~ 157 (380)
T TIGR03588 146 KHGLKIIEDASH 157 (380)
T ss_pred HcCCEEEEECCC
Confidence 999999999988
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-07 Score=103.05 Aligned_cols=245 Identities=11% Similarity=0.006 Sum_probs=152.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+++ ++.|+++++..++.++.. ..-+|+++..+|.++..++...+.+++.+|.++++.++
T Consensus 61 ~~~--~~~~~t~a~~~~~~~~~~-------------------~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 119 (350)
T cd00609 61 EIV--VTNGAQEALSLLLRALLN-------------------PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFL 119 (350)
T ss_pred eEE--EecCcHHHHHHHHHHhCC-------------------CCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCc
Confidence 445 567888888777666521 12358899999999999999999999999999888887
Q ss_pred H--HHHHHHHHhhhhcCCccEEEEec---CCccc-----------hhh-----hhcC-------------------CCCc
Q psy852 543 G--ATLRQVMQQDETMGYIPFFVSTT---LGTTS-----------CYR-----KSQG-------------------IEYA 582 (891)
Q Consensus 543 ~--~~Le~aI~~d~~~g~ip~~Vvat---aGTT~-----------c~~-----~ldG-------------------i~~a 582 (891)
. +.+++.++.. ...+++... .|... |++ .+|+ ....
T Consensus 120 ~~~~~~~~~~~~~----~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~ 195 (350)
T cd00609 120 LDLELLEAAKTPK----TKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYER 195 (350)
T ss_pred cCHHHHHhhcCcc----ceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCc
Confidence 7 5555554332 112222221 22221 322 1222 1225
Q ss_pred cEEEEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 583 DSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 583 DSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
|.+..+.||+++ .+.++|+++++++... +.+.....+.. ++ ........++..++... +++++
T Consensus 196 ~~~~~s~~K~~~~~g~~~G~i~~~~~~~~-~~~~~~~~~~~-----------~~---~~~~~~~~~~~~l~~~~-~~~~~ 259 (350)
T cd00609 196 VIVLRSFSKTFGLPGLRIGYLIAPPEELL-ERLKKLLPYTT-----------SG---PSTLSQAAAAAALDDGE-EHLEE 259 (350)
T ss_pred EEEEeecccccCCcccceEEEecCHHHHH-HHHHHHHHhcc-----------cC---CChHHHHHHHHHHhCcH-HHHHH
Confidence 777889999998 5567899988774332 22221111110 00 11122233444444433 67888
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc--CCeEE-EE
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--QNDEV-FE 738 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--g~~~l-~s 738 (891)
..++..++++++.+.|++.+...+..+.....++|++.+. ...+.+.+.|.+.|+....+.... +...+ ++
T Consensus 260 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~ 333 (350)
T cd00609 260 LRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLS 333 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEE
Confidence 8889999999999999987665543344456777777532 123455666677787654433322 55567 88
Q ss_pred ecCCCCHHHHHHHHHHHH
Q psy852 739 LQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ 756 (891)
++.+ .+||++++++|+
T Consensus 334 ~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 334 FATP--EEELEEALERLA 349 (350)
T ss_pred eeCC--HHHHHHHHHHhh
Confidence 8877 999999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-07 Score=106.08 Aligned_cols=79 Identities=9% Similarity=0.095 Sum_probs=63.8
Q ss_pred EEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+.... +...|.+++.++++ |++++++.+++. +.+|++...+|.+|.+.|+++|+++
T Consensus 103 Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~------tklV~ie~p~NptG~v~dl~~I~~l 171 (390)
T PRK08133 103 VVSSRSLFGSTVSLFEKIFARFGIETTFVDLT-----DLDAWRAAVRPN------TKLFFLETPSNPLTELADIAALAEI 171 (390)
T ss_pred EEEccCcchhHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCCcCCHHHHHHH
Confidence 77788888766543 23457788888875 789999888654 3477777889999999999999999
Q ss_pred HHHcCCceeeeccc
Q psy852 221 AKEFDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~~~~lHvDaA~ 234 (891)
|+++|+++++|.++
T Consensus 172 a~~~gi~livD~t~ 185 (390)
T PRK08133 172 AHAAGALLVVDNCF 185 (390)
T ss_pred HHHcCCEEEEECCC
Confidence 99999999999988
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.8e-07 Score=108.09 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=77.9
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--C---CcccH-----HHHHHHHHhhhhcCCcceEEEeecccCccccccC
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--K---NSLRG-----ATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN 213 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~---g~id~-----~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp 213 (891)
.|++...+|-|+..++.+.|...+++++.- . |.|+. +.++++|++.... ++|..+++|.. |--|.+-|
T Consensus 237 ~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi~yd 314 (713)
T PRK15399 237 TLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGLLYN 314 (713)
T ss_pred EEEeecccHHHHHHHHHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCceeeC
Confidence 488999999999999999999999987642 2 34566 8899999875432 45778888888 77899999
Q ss_pred HHHHHHHHHHcCCce-eeeccccCCccccCCC
Q psy852 214 LAEIGPVAKEFDVWL-HVDGAYAGSSFICPEF 244 (891)
Q Consensus 214 l~~I~~i~~~~~~~l-HvDaA~GG~~~~~~~~ 244 (891)
+++|.++| |+.+ |+|-||||++.|+|.+
T Consensus 315 ~~~I~~~~---g~~~ilvDEAhgah~~F~p~~ 343 (713)
T PRK15399 315 TDWIKQTL---DVPSIHFDSAWVPYTHFHPIY 343 (713)
T ss_pred HHHHHHHh---CCCEEEEeccchhhhhcCccc
Confidence 99999999 6665 9999999998776543
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-06 Score=100.63 Aligned_cols=83 Identities=7% Similarity=0.033 Sum_probs=68.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.|++|.+ +.+|+++|++.+.+.+ .+|+. ++.+|...|+++|.++|+
T Consensus 75 ~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~t------kav~~---~~~~G~~~d~~~i~~~a~ 145 (379)
T PRK11658 75 EVITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRT------KAIIP---VHYAGAPADLDAIRAIGE 145 (379)
T ss_pred EEEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCC------eEEEE---eCCCCCcCCHHHHHHHHH
Confidence 4888889999998888777889999999865 4699999999987543 24442 335799999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++++|+|++
T Consensus 146 ~~gi~vi~D~a~a 158 (379)
T PRK11658 146 RYGIPVIEDAAHA 158 (379)
T ss_pred HcCCeEEEECCCc
Confidence 9999999999983
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.4e-08 Score=108.34 Aligned_cols=239 Identities=12% Similarity=0.001 Sum_probs=149.0
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccC
Q psy852 52 SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH 131 (891)
Q Consensus 52 ~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~ 131 (891)
+|.+.++-..+.+.|.+++|.|.+.. -+| .+++||..-++...++....
T Consensus 32 ~~~f~~~~~~~~~~l~~l~~~~~~~~-------v~~--------------------~~gsgT~a~ea~~~nl~~~~---- 80 (349)
T TIGR01364 32 SKEFEAVANEAESDLRELLNIPDNYE-------VLF--------------------LQGGATGQFAAVPLNLLAEG---- 80 (349)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCce-------EEE--------------------EcCCchHHHHHHHHhcCCCC----
Confidence 56667899999999999999854320 111 12447655444444442211
Q ss_pred CccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCC----cccHHHHHHHHHhhhhcCCcceEEEeecccCc
Q psy852 132 PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN----SLRGATLRQVMQQDETMGYIPFFVSTTLGTTS 207 (891)
Q Consensus 132 ~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g----~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~ 207 (891)
.+-+++.++..+|-...-+-+.+ . +..+.+++.+ .+|+++++. .+ .+-+|.+|+..|.
T Consensus 81 --------~~~l~i~~G~fg~r~~~~a~~~g-~-~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~v~~th~ETs 142 (349)
T TIGR01364 81 --------KVADYIVTGAWSKKAAKEAKKYG-V-VNVVASGKEGNYTKIPDPSTWEI--SE------DAAYVHYCANETI 142 (349)
T ss_pred --------CeEEEEECCHHHHHHHHHHHHhC-C-cEEEeccccCCCCCCCCHHhcCC--CC------CCCEEEEcCCCCc
Confidence 12345666777777754444444 4 6666665444 345554441 11 2459999999999
Q ss_pred cccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHh
Q psy852 208 CCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAIS 287 (891)
Q Consensus 208 ~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~ 287 (891)
||...| ++++.+++.+.|||+.+ .++..++
T Consensus 143 tGv~~~-----~l~~~~~~l~iVDavss---------------------------------~g~~~id------------ 172 (349)
T TIGR01364 143 HGVEFR-----ELPDVKNAPLVADMSSN---------------------------------ILSRPID------------ 172 (349)
T ss_pred ccEecc-----eecccCCCeEEEEcccc---------------------------------ccCccCC------------
Confidence 999977 66666788888998771 1111000
Q ss_pred hhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEe
Q psy852 288 KLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVN 367 (891)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~ 367 (891)
+ + ..|.+.++
T Consensus 173 ---------------------------------------------------------------~----~---~~d~~~~s 182 (349)
T TIGR01364 173 ---------------------------------------------------------------V----S---KFGLIYAG 182 (349)
T ss_pred ---------------------------------------------------------------H----H---HccEEEEe
Confidence 0 0 13789999
Q ss_pred CCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCCh-hHHHHHHHHHHhcHH-HHHHHHHHH
Q psy852 368 VNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLS-GLQKYIRRH 445 (891)
Q Consensus 368 ~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~-G~~~ii~~~ 445 (891)
+||++ +|-|.|+++++++..-. .-...+.|.... .........++-+. ...++-.+|+++-.+ |+.++.++.
T Consensus 183 sqK~l-gP~Glg~l~~s~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~ 256 (349)
T TIGR01364 183 AQKNI-GPAGLTVVIVRKDLLGR-ASRITPSMLNYK----IHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRN 256 (349)
T ss_pred ccccc-CCCceEEEEECHHHHhh-cccCCCCcchHH----HHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99976 59999999999753211 111122222110 00001122233333 356888999999988 799999999
Q ss_pred HHHHHHHHHhhccCCccccc
Q psy852 446 CELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv 465 (891)
.++++++.+.|.+.+++...
T Consensus 257 ~~l~~~l~~~l~~~~gl~~~ 276 (349)
T TIGR01364 257 QAKAQLLYDTIDNSNGFYRN 276 (349)
T ss_pred HHHHHHHHHHHHhCCCeecc
Confidence 99999999999999876444
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=113.29 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=77.1
Q ss_pred EEEecCCCChHHHHH-HHHcCCeEEEEecC--CC---CcccHHH-----HHHHHHhh---hhcCCcc-eEEEeecccCcc
Q psy852 144 MAYCSKEAHSCVEKA-AMMAFVRLKILEPD--DK---NSLRGAT-----LRQVMQQD---ETMGYIP-FFVSTTLGTTSC 208 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka-a~~~~~~v~~V~~d--~~---g~id~~~-----L~~~l~~~---~~~g~~p-~~V~~t~Gtt~~ 208 (891)
.|++...+|-|+..+ +.+.|...+++++. +. |.|+.+. ++++|++. ..+...| .++++|.. |--
T Consensus 216 ~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYd 294 (720)
T PRK13578 216 LVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYD 294 (720)
T ss_pred EEEeecccHHHHHHHHHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCc
Confidence 488999999999996 67888899998764 32 4467555 88888765 2223355 47777776 667
Q ss_pred ccccCHHHHHHH-HHHcCCceeeeccccCCccccCCC
Q psy852 209 CSFDNLAEIGPV-AKEFDVWLHVDGAYAGSSFICPEF 244 (891)
Q Consensus 209 GavDpl~~I~~i-~~~~~~~lHvDaA~GG~~~~~~~~ 244 (891)
|.+-|+++|+++ ++.++ +||+|-|||+++.|+|.|
T Consensus 295 G~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~ 330 (720)
T PRK13578 295 GTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMM 330 (720)
T ss_pred ceeecHHHHHHHhhccCC-cEEEeCcchhhhccCccc
Confidence 999999999998 67777 999999999998876643
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-07 Score=105.01 Aligned_cols=85 Identities=5% Similarity=-0.013 Sum_probs=60.9
Q ss_pred cCCCChHHHHHH-HHcCCeEEEEec----------CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc----cc
Q psy852 148 SKEAHSCVEKAA-MMAFVRLKILEP----------DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS----FD 212 (891)
Q Consensus 148 S~~~H~Sv~kaa-~~~~~~v~~V~~----------d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga----vD 212 (891)
+..+|++-.++. ...|...+-|.+ ..+|.||++.|++.|++... ..+.+|+++..++..|. .+
T Consensus 121 p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~--~~~~lV~a~itvn~~GGqpvs~~ 198 (460)
T PRK13237 121 PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGA--ENIAYICLAVTVNLAGGQPVSMA 198 (460)
T ss_pred CCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccC--CccCceEEEEecccCCCeeCCHH
Confidence 777888888874 455553333321 23699999999999975321 22335666666676642 46
Q ss_pred CHHHHHHHHHHcCCceeeeccc
Q psy852 213 NLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 213 pl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++.+|.++|+++|++||.|||.
T Consensus 199 ~m~~I~elA~~~Gl~Vi~DaAr 220 (460)
T PRK13237 199 NMRAVRELCDKHGIKVFFDATR 220 (460)
T ss_pred hHHHHHHHHHHcCCEEEEECcc
Confidence 8999999999999999999988
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=106.84 Aligned_cols=262 Identities=12% Similarity=-0.019 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..|.++..+......... ...-++.+.++-.++.+.+++++|.+++.. - .+
T Consensus 14 ~~~~v~~a~~~~~~~~~~-~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~-------v---------------------~f 64 (361)
T TIGR01366 14 VRLEQLQALTTTAASLFG-TSHRQAPVKNLVGRVREGLAELFSLPDGYE-------V---------------------IL 64 (361)
T ss_pred CCHHHHHHHHhcCccccc-cCcCChHHHHHHHHHHHHHHHHhCCCCCce-------E---------------------EE
Confidence 447777765533222222 224567788999999999999999965410 1 12
Q ss_pred -ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHH-HHHHHH---cCCeEEEEecCCCCcccHHHHH
Q psy852 109 -LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCV-EKAAMM---AFVRLKILEPDDKNSLRGATLR 183 (891)
Q Consensus 109 -~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv-~kaa~~---~~~~v~~V~~d~~g~id~~~L~ 183 (891)
+++||..-+....++... .. ++++.-+|.+- .+.+.+ .+ ++..++++....++.+
T Consensus 65 ~~gs~T~a~~~~~~~l~~~--------------~~--l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~--- 124 (361)
T TIGR01366 65 GNGGATAFWDAATFGLIEK--------------KS--LHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPGSAPEPQ--- 124 (361)
T ss_pred ECCchhHHHHHHHHhcccc--------------cc--cEEecCHHHHHHHHHHHhhhccC-CceEEecCCCCCCCCc---
Confidence 245765544444443211 11 22223333222 222222 23 6777777654444432
Q ss_pred HHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCccc
Q psy852 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIW 263 (891)
Q Consensus 184 ~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~ 263 (891)
+.+ .+-+|++|+.+|.+|.+.|+++| ++++|+.+.|||++.
T Consensus 125 --~~~------~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs---------------------------- 165 (361)
T TIGR01366 125 --ADP------GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSG---------------------------- 165 (361)
T ss_pred --cCC------CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCcc----------------------------
Confidence 222 24599999999999999999998 478899999999871
Q ss_pred ccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccC
Q psy852 264 YERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAG 343 (891)
Q Consensus 264 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 343 (891)
.++..+ .
T Consensus 166 -----~g~~~i-------------------------------------------------------------d------- 172 (361)
T TIGR01366 166 -----AGGLPV-------------------------------------------------------------D------- 172 (361)
T ss_pred -----ccCCCC-------------------------------------------------------------C-------
Confidence 111111 0
Q ss_pred ccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEecccc--chhhccc---CccccCCCCCCcccccccccCCC
Q psy852 344 SSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYK--LTSALVV---DPLYLQHGHEGAIDYRHWGIPLS 418 (891)
Q Consensus 344 ~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~--~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~s 418 (891)
++ .+|.+.+++||+++.|-+.++++++++.. +...... .|.|+.-.... .+.......++
T Consensus 173 -----------v~---~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~-~~~~~~~t~~t 237 (361)
T TIGR01366 173 -----------IA---ETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAV-DNSLKNQTYNT 237 (361)
T ss_pred -----------HH---HCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHH-hccccCCCCCC
Confidence 01 26999999999988885555555565421 1111100 01222110000 00000111222
Q ss_pred CChhH-HHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 419 RRFRS-LKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 419 r~~~~-l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
-+... +++-.+++++-.+ |+..+.++..++++++++.|.+.+.++++.
T Consensus 238 p~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~ 287 (361)
T TIGR01366 238 PAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFV 287 (361)
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 22333 3677889988887 699999999999999999999988766663
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-07 Score=102.63 Aligned_cols=158 Identities=9% Similarity=0.096 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccc
Q psy852 32 SVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGG 111 (891)
Q Consensus 32 ~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~g 111 (891)
..+.+.+..........|...+...++++.+.+++.+.+|.+-. |+.++ .|+|
T Consensus 49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------------~~~i~--------------~t~G 101 (391)
T PRK08361 49 KNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVD-------------VDNVI--------------VTAG 101 (391)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------------cccEE--------------EeCC
Confidence 44445555444433333433455678888899998888776422 11111 2445
Q ss_pred hhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhh
Q psy852 112 GVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQD 189 (891)
Q Consensus 112 Gt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~ 189 (891)
++. +....+.. --. +.-.|++..-+|.+....+...|.+++.+++|++ +.+|+++|++.+++.
T Consensus 102 ~~~-al~~~~~~-l~~-------------~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 166 (391)
T PRK08361 102 AYE-ATYLAFES-LLE-------------EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKR 166 (391)
T ss_pred hHH-HHHHHHHH-hcC-------------CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccc
Confidence 543 32222211 111 1123777778898888888777889999999864 479999999988754
Q ss_pred hhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCC
Q psy852 190 ETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 190 ~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+-+|+++..+|.+|.+-| +++|+++|+++++++++|.+|+.+
T Consensus 167 ------~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~ 211 (391)
T PRK08361 167 ------TRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHF 211 (391)
T ss_pred ------cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccc
Confidence 236667778999999999 889999999999999999999543
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=107.03 Aligned_cols=81 Identities=9% Similarity=0.042 Sum_probs=66.0
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+..+.+ ...+.+++.++++ |++++++++++. +.+|.++..+|.+|.+-|+++|++
T Consensus 87 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~~~le~~i~~~------tklv~le~psnptg~v~dl~~I~~ 155 (378)
T TIGR01329 87 EIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT-----DLDKVKAALGPK------TKLVLLESPTNPLQKIVDIRKISE 155 (378)
T ss_pred EEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCeeecHHHHHH
Confidence 4777788888876643 2357788888764 889999888643 358888889999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++.||+|++
T Consensus 156 la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 156 MAHAQNALVVVDNTMM 171 (378)
T ss_pred HHHHcCCEEEEECCCc
Confidence 9999999999999883
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.9e-08 Score=108.59 Aligned_cols=258 Identities=13% Similarity=0.009 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHHhcC---CCCCcc---ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy852 29 SYPSVLADMLSDAIG---CIGFSW---AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTP 102 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n---~~~~~~---~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~ 102 (891)
..+.++..|.....+ .....+ ..++.+.++-.++.+.+++++|.|++.. -+|
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~-------v~~--------------- 71 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYK-------VLF--------------- 71 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcE-------EEE---------------
Confidence 456777777766532 222222 3456667899999999999999854320 111
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHH
Q psy852 103 ANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGAT 181 (891)
Q Consensus 103 ~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~ 181 (891)
.+++|+..--+..+++.... .+-+++.++..+|-+...+-+.+ .. ..++++. .|..+..+
T Consensus 72 -----~~gsgt~~~Ea~~~nl~~~g------------~~~l~i~~G~fg~r~~~~a~~~g-~~-~~~~~~~~~g~~~~~~ 132 (360)
T PRK05355 72 -----LQGGASLQFAMVPMNLLGGG------------KKADYVDTGSWSKKAIKEAKKYG-EV-NVAASSEDDGFTYIPP 132 (360)
T ss_pred -----EcCCchHHHHHHHHhcCCCC------------CeEEEEECCHHHHHHHHHHHHhC-Cc-eEEecccccCCCCCCC
Confidence 12344321112223331110 12355677778888755444555 33 6666654 78888777
Q ss_pred HHH-HHHhhhhcCCcceEEEeecccCcccccc-CHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCC
Q psy852 182 LRQ-VMQQDETMGYIPFFVSTTLGTTSCCSFD-NLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHL 259 (891)
Q Consensus 182 L~~-~l~~~~~~g~~p~~V~~t~Gtt~~GavD-pl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~ 259 (891)
+++ .++++ +-+|.+|+..|.||.+. ||.+| +|+.+.|||++.
T Consensus 133 ~~~~~l~~~------~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss------------------------ 176 (360)
T PRK05355 133 LDEWQLSDD------AAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSD------------------------ 176 (360)
T ss_pred hhhccCCCC------CCEEEEccCCCcceEecCccccc------CCCcEEEEcCcc------------------------
Confidence 777 56443 45999999999999997 77777 788999999771
Q ss_pred CcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeec
Q psy852 260 SPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDG 339 (891)
Q Consensus 260 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 339 (891)
.++..++
T Consensus 177 ---------~g~~~id---------------------------------------------------------------- 183 (360)
T PRK05355 177 ---------ILSRPID---------------------------------------------------------------- 183 (360)
T ss_pred ---------ccCccCC----------------------------------------------------------------
Confidence 1111110
Q ss_pred cccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhccc-CccccCCCCCCcccccccccCCC
Q psy852 340 AYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLS 418 (891)
Q Consensus 340 ~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~s 418 (891)
++ ..|.+.+++||++ +|-|.|+++++++..-. +.. .+.|+..... . ......++
T Consensus 184 ---------------v~---~~d~~~~ssqK~l-gP~Glg~l~~s~~~l~~--~~~~~~~~~~~~~~--~--~~~~~~~T 238 (360)
T PRK05355 184 ---------------VS---KFGLIYAGAQKNI-GPAGLTIVIVREDLLGR--ALPSIPSMLDYKTH--A--DNDSMYNT 238 (360)
T ss_pred ---------------HH---HccEEEEeccccc-cCCceEEEEECHHHHhh--cccCCChHHHHHHH--H--hcCCccCC
Confidence 01 1378999999976 59999999999763211 111 1223221100 0 01112233
Q ss_pred CCh-hHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCc
Q psy852 419 RRF-RSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPR 461 (891)
Q Consensus 419 r~~-~~l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~ 461 (891)
-+. ...++-.+|+++-.+ |+.++.++..++++++.+.|++.+.
T Consensus 239 p~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~ 283 (360)
T PRK05355 239 PPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDF 283 (360)
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333 356888999999888 8999999999999999999999774
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-07 Score=104.51 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=64.0
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+....+ ...+.++..++.+ |++++++.+++. +.+|++...+|.+|.+.|+++|++
T Consensus 81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~e~~~np~g~~~dl~~i~~ 149 (369)
T cd00614 81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD-----DPEALEAAIKPE------TKLVYVESPTNPTLKVVDIEAIAE 149 (369)
T ss_pred EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHH
Confidence 3777778887766543 2346688888765 588888888643 347777888899999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++++|.||+
T Consensus 150 la~~~g~~livD~t~~ 165 (369)
T cd00614 150 LAHEHGALLVVDNTFA 165 (369)
T ss_pred HHHHcCCEEEEECCCc
Confidence 9999999999999984
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-07 Score=102.53 Aligned_cols=79 Identities=9% Similarity=0.087 Sum_probs=61.8
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+..... ...+.+++.++ .+|++++++++++. +-+|.++..+|.+|.+-|+++|.++
T Consensus 107 Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~~~------tklV~lesp~NptG~v~dl~~I~~l 175 (398)
T PRK07504 107 VVAARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVRPN------TKVFFLESPTNPTLEVIDIAAVAKI 175 (398)
T ss_pred EEEcCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcCcC------ceEEEEECCCCCCcEecCHHHHHHH
Confidence 667666666544333 23466777774 37899999988654 3488888899999999999999999
Q ss_pred HHHcCCceeeeccc
Q psy852 221 AKEFDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~~~~lHvDaA~ 234 (891)
|+++|+++++|+||
T Consensus 176 a~~~gi~lvvD~a~ 189 (398)
T PRK07504 176 ANQAGAKLVVDNVF 189 (398)
T ss_pred HHHcCCEEEEECCc
Confidence 99999999999988
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-06 Score=100.20 Aligned_cols=204 Identities=12% Similarity=0.118 Sum_probs=126.6
Q ss_pred eEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecC---Cccc--------hhh----------h----h------
Q psy852 529 RLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTL---GTTS--------CYR----------K----S------ 576 (891)
Q Consensus 529 ~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata---GTT~--------c~~----------~----l------ 576 (891)
+.+..++| ++|.+|+++|++.+.+. .|.+++..+ |... |.+ | +
T Consensus 194 ~~~~y~vd~~~g~iD~d~l~~~~~~~-----~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~ 268 (493)
T PRK13580 194 HQRSYGVDPDTGLLDYDEIAALAREF-----KPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFT 268 (493)
T ss_pred eeEecccCcccCccCHHHHHHHHhhc-----CCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECchhhceeccccch
Confidence 56666676 56999999999999874 345554422 2221 322 1 1
Q ss_pred ---cCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHH
Q psy852 577 ---QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT 653 (891)
Q Consensus 577 ---dGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~ 653 (891)
....++|.++++.||++.+|.| |++++++. +.+.+....+|+.++. +. -.....-.+++.
T Consensus 269 ~~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~--l~~~L~~a~P~i~gg~----------l~----p~iAA~avAl~e 331 (493)
T PRK13580 269 GDEDPVPHADIVTTTTHKTLRGPRG-GLVLAKKE--YADAVDKGCPLVLGGP----------LP----HVMAAKAVALAE 331 (493)
T ss_pred hhcCCCCCCcEEEeCChhhccCCCe-EEEEecHH--HHHHHhhCCCcccCCC----------cc----HHHHHHHHHHHH
Confidence 1234789999999999988996 77777644 2222211123333211 00 011112223444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE---eecc
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHM---VPAS 729 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~---s~s~ 729 (891)
+-...+.+..++..+++++|.+.|++. +|.++. ..+.++|.+.+.+. +.....+.+.|.+.|++.. .|+.
T Consensus 332 ~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~-----~~~g~~a~~~L~e~GI~vn~i~~Ptv 405 (493)
T PRK13580 332 ARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSF-----GLTGRQAESALLDAGIVTNRNSIPSD 405 (493)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCH-----HHHHHHHHHHHHHCCeEEccccCCCC
Confidence 433456778889999999999999884 777764 35678998888543 2222356678889998732 2222
Q ss_pred ccC---CeEE-EEecC----CCCHHHHHHHHHHHHHHHH
Q psy852 730 QEQ---NDEV-FELQE----RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 730 ~~g---~~~l-~sv~~----~tT~edId~li~~L~ei~~ 760 (891)
..+ ..-+ ++++. ..+++||+.+++.|.++..
T Consensus 406 p~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~ 444 (493)
T PRK13580 406 PNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS 444 (493)
T ss_pred CCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence 233 3445 77655 4479999999999988774
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-07 Score=96.58 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=82.5
Q ss_pred CeEEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcC-CcceEEEeecccCccccccCHHHHH
Q psy852 142 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMG-YIPFFVSTTLGTTSCCSFDNLAEIG 218 (891)
Q Consensus 142 ~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g-~~p~~V~~t~Gtt~~GavDpl~~I~ 218 (891)
...|+.-..+||+..-|+...|.++..||-. ++..++++...+.|++-+++| ..|.+...|+...+.|.+.|.+.|+
T Consensus 100 gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva 179 (382)
T COG1103 100 GDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVA 179 (382)
T ss_pred CCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHH
Confidence 3457777899999999998888899999953 578999999999999987665 7789999999999999999999999
Q ss_pred HHHHHcCCceeeeccc
Q psy852 219 PVAKEFDVWLHVDGAY 234 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~ 234 (891)
+||++||+++.+.+||
T Consensus 180 ~ic~e~gvPlllN~AY 195 (382)
T COG1103 180 KICREYGVPLLLNCAY 195 (382)
T ss_pred HHHHHcCCceEeecce
Confidence 9999999988888887
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-07 Score=104.81 Aligned_cols=271 Identities=15% Similarity=0.152 Sum_probs=192.1
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+...+. .++ +++|++++++.++.+++...... .+...|+++..+|+++.+++...
T Consensus 63 ~~~~~la~~~g~~~~-~~~--~~~g~~~~~~~~~~~~~~~~~~~-------------~~g~~vl~~~~~h~~~~~~~~~~ 126 (373)
T TIGR03812 63 EVVGSLGNLLHLPDA-YGY--IVSGGTEANIQAVRAAKNLAREE-------------KRTPNIIVPESAHFSFEKAAEML 126 (373)
T ss_pred HHHHHHHHHhCCCCC-CeE--EeccHHHHHHHHHHHHHHHHhcc-------------CCCcEEEECCcchHHHHHHHHHc
Confidence 344566777665333 222 46688999988887765432110 01236889999999999999988
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc--------hhh-----hhcC-------------
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS--------CYR-----KSQG------------- 578 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~--------c~~-----~ldG------------- 578 (891)
|++++.+|.+.++.+|+++|++++++++ ...+++. +..|+.. |++ ++|+
T Consensus 127 G~~~~~v~~~~~~~~d~~~l~~~l~~~~---~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~ 203 (373)
T TIGR03812 127 GLELRYAPLDEDYTVDVKDVEDLIDDNT---IGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKG 203 (373)
T ss_pred CCeEEEEeeCCCCCcCHHHHHHHHhhCc---EEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcC
Confidence 9999999999999999999999997642 0111121 2344433 332 1222
Q ss_pred -----C----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHH
Q psy852 579 -----I----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLW 648 (891)
Q Consensus 579 -----i----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW 648 (891)
+ ..+|++++|+|||+++|.++|.+++++++.+. .+.....|+.... .+...++|. ...+.+|
T Consensus 204 ~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~-~l~~~~~~~~~~~-------~~~~~gt~~~~~~~~~~ 275 (373)
T TIGR03812 204 YNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLK-YLSVDAPYLTVKK-------QATITGTRSGASAAATY 275 (373)
T ss_pred CCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHh-hhcccCcccCCCC-------CcceEeechhHHHHHHH
Confidence 1 26799999999999999999999988776443 2322234443211 223345664 4567899
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
.+++.++.+|+++..++..+++++|.+.|++++ ++.+.++..++|+|++++ ...+.+.|.++|+++. ..
T Consensus 276 ~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~v~~~~~~---------~~~v~~~L~~~gi~v~-~~ 344 (373)
T TIGR03812 276 AVIKYLGREGYRKIVAECMENTRYLVEELKKIG-FEPVIEPVLNIVAFEVDD---------PEEVRKKLRDRGWYVS-VT 344 (373)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEcCCCceEEEEEeCC---------HHHHHHHHHHCCceec-cC
Confidence 999999999999999999999999999999974 554445678999998852 2468888888897743 22
Q ss_pred cccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 729 SQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 729 ~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
....++ ++++.++|++|+|+++++|++
T Consensus 345 --~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 345 --RCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred --CCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 234567 999999999999999999976
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-06 Score=96.85 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=68.3
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.+...++.+.+.+++.++. .|+++|++.++... ..+.++++....|.+|.++|+++|+++|++
T Consensus 125 ~V~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~~---~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~ 196 (385)
T PRK05958 125 LIVSDKLNHASLIDGARLSRARVRRYPH-----NDVDALEALLAKWR---AGRALIVTESVFSMDGDLAPLAELVALARR 196 (385)
T ss_pred EEEEeCccCHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhcc---CCCeEEEEEecccCCCCcCCHHHHHHHHHH
Confidence 4777888999999988877778888875 38899999886531 124566666667889999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.+|+
T Consensus 197 ~~~~li~De~~~ 208 (385)
T PRK05958 197 HGAWLLVDEAHG 208 (385)
T ss_pred hCCEEEEECccc
Confidence 999999999994
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.9e-06 Score=94.80 Aligned_cols=254 Identities=10% Similarity=0.037 Sum_probs=150.2
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~ 529 (891)
+.+++.+.. +. .+ +++|++++|..++.+. . .+.-.|+++..+|.++..++.+.+.+
T Consensus 90 ~~ia~~~g~-~~-~i---i~~~~~~a~~~~~~~l----~---------------~~gd~vi~~~~~~~s~~~~~~~~~~~ 145 (393)
T TIGR01822 90 AKIAAFLGT-ED-TI---LYASCFDANGGLFETL----L---------------GAEDAIISDALNHASIIDGVRLCKAK 145 (393)
T ss_pred HHHHHHhCC-Cc-EE---EECchHHHHHHHHHHh----C---------------CCCCEEEEeccccHHHHHHHHhcCCc
Confidence 456666654 22 23 3457788888554332 1 11235888999999999888876665
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE-----ecCCccc--------hhhh-----hc--------------
Q psy852 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS-----TTLGTTS--------CYRK-----SQ-------------- 577 (891)
Q Consensus 530 v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv-----ataGTT~--------c~~~-----ld-------------- 577 (891)
.+.++ .+|+++|+++|.+....+..+.+|+ +..|... |++| +|
T Consensus 146 ~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~ 220 (393)
T TIGR01822 146 RYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRG 220 (393)
T ss_pred eEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCc
Confidence 54433 4899999999987433221222332 2334443 4331 11
Q ss_pred -----CC-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCccccccc-ccchHHHH
Q psy852 578 -----GI-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWF 649 (891)
Q Consensus 578 -----Gi-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~ 649 (891)
++ ..+|.++.++||+++++ ..|+++.+. ... +.+.. ...|.. .++.. ........
T Consensus 221 ~~~~~~~~~~~di~~~s~sK~l~g~-r~G~~~~~~-~~~-~~l~~~~~~~~~--------------~~~~~~~~~~a~~~ 283 (393)
T TIGR01822 221 SHELCGVMGRVDIITGTLGKALGGA-SGGFTTARK-EVV-ELLRQRSRPYLF--------------SNSLPPAVVGASIK 283 (393)
T ss_pred hHHhcCCCCCCeEEEEEChHHhhCC-CcEEEEeCH-HHH-HHHHHhCcccee--------------cCCCCHHHHHHHHH
Confidence 11 14789999999998765 457766543 222 22211 111211 11111 11112233
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 650 VIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 650 ~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
+++.+ +..++..++..++++++.+.|++. ++++. ++..+++.+.+.+ ......+.+.|.++|+... +..
T Consensus 284 al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~------~~~~~~l~~~L~~~gI~v~-~~~ 352 (393)
T TIGR01822 284 VLEML--EASNELRDRLWANTRYFRERMEAA-GFDIK-PADHPIIPVMLYD------AVLAQRFARRLLEEGIYVT-GFF 352 (393)
T ss_pred HHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCC------HHHHHHHHHHHHHCCeeEe-eeC
Confidence 33332 345566778889999999999875 67664 3345577776642 1245678889988897644 322
Q ss_pred c----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 730 Q----EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 730 ~----~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
. .+...+ ++++..+|++||+++++.|+++.+
T Consensus 353 ~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 388 (393)
T TIGR01822 353 YPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGR 388 (393)
T ss_pred CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 1 233456 999999999999999999998753
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-07 Score=105.24 Aligned_cols=177 Identities=14% Similarity=0.154 Sum_probs=122.5
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+..+.+ ...+.+++.++. .|++++++++.+. +.+|+++..+|.+|.+.||++|++
T Consensus 173 ~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~-----~d~e~l~~ai~~~------TklV~lesPsNPtG~i~Dl~~I~~ 241 (464)
T PLN02509 173 EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-----TNLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKIAE 241 (464)
T ss_pred EEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC-----CCHHHHHHhCCcC------CeEEEEECCCCCCCCHHHHHHHHH
Confidence 3777888887776443 235667777753 3688898888654 348888999999999999999999
Q ss_pred HHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchh
Q psy852 220 VAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEG 299 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (891)
+|+++|+++.+|.||+.....
T Consensus 242 lAk~~g~~lIVD~A~a~~~~~----------------------------------------------------------- 262 (464)
T PLN02509 242 MAHAQGALVLVDNSIMSPVLS----------------------------------------------------------- 262 (464)
T ss_pred HHHHcCCEEEEECCccccccC-----------------------------------------------------------
Confidence 999999999999998422110
Q ss_pred hHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--
Q psy852 300 VLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD-- 377 (891)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~-- 377 (891)
. +. + ..+|-+..++|||+.+|-+
T Consensus 263 ------------------------------------------------~----pl--~-~gaDivv~S~tK~l~G~gdv~ 287 (464)
T PLN02509 263 ------------------------------------------------R----PL--E-LGADIVMHSATKFIAGHSDVM 287 (464)
T ss_pred ------------------------------------------------C----hh--h-cCCcEEEecCcccccCCCccc
Confidence 0 00 0 1369999999999999876
Q ss_pred ceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhc
Q psy852 378 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 457 (891)
Q Consensus 378 ~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~ 457 (891)
.|++.+++...... +. .+... ......+...|+.++ |.+-+..++++..++|+++++.|+
T Consensus 288 gG~v~~~~~~l~~~-~~----~~~~~-------------~g~~l~p~~A~l~lr--~L~tL~~R~~r~~~nA~~la~~L~ 347 (464)
T PLN02509 288 AGVLAVKGEKLAKE-VY----FLQNS-------------EGSGLAPFDCWLCLR--GIKTMALRIEKQQENARKIAMYLS 347 (464)
T ss_pred eeEEEeccHHHHHH-HH----HHHHh-------------cCCCcCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHh
Confidence 77777765432111 10 00000 001134556676665 445667899999999999999999
Q ss_pred cCCccccc
Q psy852 458 RDPRFEIS 465 (891)
Q Consensus 458 ~~~~~eVv 465 (891)
++|.++-+
T Consensus 348 ~~p~V~~V 355 (464)
T PLN02509 348 SHPRVKKV 355 (464)
T ss_pred cCCCccEE
Confidence 99987533
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-06 Score=100.14 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=61.1
Q ss_pred EEecCCCChHHHH----HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~k----aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+... .+...+.+++.++.+ |++++++.+++. +.+|.+...+|.+|.+.|+++|.++
T Consensus 96 Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~~i~~~------tklV~le~p~np~g~~~dl~~I~~l 164 (380)
T TIGR01325 96 VVASRSLFGSTVGFISEILPRFGIEVSFVDPT-----DLNAWEAAVKPN------TKLVFVETPSNPLGELVDIAALAEL 164 (380)
T ss_pred EEEecCCcchHHHHHHHHHHHhCCEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCeeeCHHHHHHH
Confidence 5556666654322 333456788888765 788888877543 3477788889999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++++|.||+
T Consensus 165 a~~~gi~livD~a~~ 179 (380)
T TIGR01325 165 AHAIGALLVVDNVFA 179 (380)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999983
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.4e-07 Score=101.81 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=60.6
Q ss_pred EEecCCCChHHHH----HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~k----aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+... .+...|.+++.++.+ |++++++.+.+. +.+|.+...+|.+|.+-|+++|+++
T Consensus 101 Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-----d~e~l~~~i~~~------tklV~le~p~Np~G~v~dl~~I~~l 169 (391)
T TIGR01328 101 LISDECLYGCTFALLEHALTKFGIQVDFINMA-----IPEEVKAHIKDN------TKIVYFETPANPTMKLIDMERVCRD 169 (391)
T ss_pred EEEecCcchHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHH
Confidence 6666666644332 233356788888765 789999888654 3477777788999999999999999
Q ss_pred HHHcCCceeeeccc
Q psy852 221 AKEFDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~~~~lHvDaA~ 234 (891)
|+++|+++++|.|+
T Consensus 170 a~~~gi~livD~a~ 183 (391)
T TIGR01328 170 AHSQGVKVIVDNTF 183 (391)
T ss_pred HHHcCCEEEEECCC
Confidence 99999999999988
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.1e-07 Score=102.48 Aligned_cols=271 Identities=15% Similarity=0.163 Sum_probs=182.3
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH--
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM-- 525 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l-- 525 (891)
+.+.+++.+...++ +|+ +++|+|+++..++........ ++.+|+++..+|+++...+..
T Consensus 47 ~r~~la~~~g~~~~-~i~--~t~~~t~a~~~al~~~~~~~~----------------~~~~vv~~~~~~~s~~~~~~~~~ 107 (379)
T TIGR03402 47 AREQVAKLLGAEPD-EII--FTSGGTESDNTAIKSALAAQP----------------EKRHIITTAVEHPAVLSLCQHLE 107 (379)
T ss_pred HHHHHHHHhCCCCC-eEE--EeCcHHHHHHHHHHHHHHhcC----------------CCCeEEEcccccHHHHHHHHHHH
Confidence 33467777765544 566 788999999988877543210 123688999999998776643
Q ss_pred -cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCcc-EEEEecCCccc--------hhh-----hhcCC-----------
Q psy852 526 -AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIP-FFVSTTLGTTS--------CYR-----KSQGI----------- 579 (891)
Q Consensus 526 -~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip-~~VvataGTT~--------c~~-----~ldGi----------- 579 (891)
.|++++.||.+.+|.+|+++|+++|++++. .+. ..+.+..|+.. |++ ++|++
T Consensus 108 ~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~--lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~ 185 (379)
T TIGR03402 108 KQGYKVTYLPVDEEGRLDLEELRAAITDDTA--LVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLK 185 (379)
T ss_pred HcCCEEEEEccCCCCcCCHHHHHHhcCCCcE--EEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcc
Confidence 588999999998999999999999976421 111 11223345544 444 24442
Q ss_pred -CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc-cccccc-chHHHHHHHHHHH
Q psy852 580 -EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP-LSRRFR-SLKLWFVIRTYGL 656 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~-~SRr~~-aL~lW~~L~~lG~ 656 (891)
..+|++++++|| +++|.|+|++++|+...+.+.+ . .+.. ..... ++-.+. .+.+-.+++. ..
T Consensus 186 ~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~~~p~~------~-g~~~------~~~~~~gt~~~~~~~~l~~al~~-~~ 250 (379)
T TIGR03402 186 EMNIDMLSLSGHK-LHGPKGVGALYIRKGTRFRPLL------R-GGHQ------ERGRRAGTENVPGIVGLGKAAEL-AT 250 (379)
T ss_pred cCCCCEEEEcHHH-cCCCCceEEEEECCCCCCCCcc------c-CCcc------CCCcCCCCccHHHHHHHHHHHHH-HH
Confidence 258999999999 6789999999998764332211 1 0000 00000 111111 1233444443 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccC
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQ 732 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g 732 (891)
+.+++..++..++++++.+.|++ ++++++..++. .++++|.+... ..+++...|.+.|+.+..++.+..
T Consensus 251 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gI~v~~g~~c~~ 323 (379)
T TIGR03402 251 EHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI-------EGEAILLLLDMEGICASSGSACTS 323 (379)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC-------CHHHHHHhhccCCEEEEchhhcCC
Confidence 56788888899999999999986 89999887543 46898988644 346788888888988766654321
Q ss_pred -------------------CeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 733 -------------------NDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 733 -------------------~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
...+ +|++++||++|||++++.|++++..
T Consensus 324 ~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 324 GSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIAR 372 (379)
T ss_pred CCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 2467 9999999999999999999988743
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.7e-07 Score=107.21 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=79.9
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--C---Cccc-----HHHHHHHHHhhhhcCCcceEEEeecccCccccccC
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--K---NSLR-----GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN 213 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~---g~id-----~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp 213 (891)
.|++...+|-|+..++.+.|...+++++.- . |.|+ .+.++++|++.-.. +.|..+++|.. |--|.+-|
T Consensus 237 ~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~p-TYdG~~yd 314 (714)
T PRK15400 237 TVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYN 314 (714)
T ss_pred EEEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEECC-CCccEecC
Confidence 488999999999999999999999988653 2 3456 89999999875432 45778888888 77899999
Q ss_pred HHHHHHHHHHcCCceeeeccccCCccccCCC
Q psy852 214 LAEIGPVAKEFDVWLHVDGAYAGSSFICPEF 244 (891)
Q Consensus 214 l~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~ 244 (891)
+++|+++|+.++ +|+|-|||+++.|+|.+
T Consensus 315 ~~~I~~~~~~~~--ilvDEAwgah~~F~p~~ 343 (714)
T PRK15400 315 TDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (714)
T ss_pred HHHHHHHhCCCC--EEEEccchhhhccCccc
Confidence 999999999887 79999999998876543
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-06 Score=97.09 Aligned_cols=173 Identities=10% Similarity=0.003 Sum_probs=106.1
Q ss_pred CCccEEEEcCcccCCcccccEEEEEeCCcc--chhhhccC---CCccccCCCCCccccCCccccccccc-chHHHHHHHH
Q psy852 580 EYADSFNVNVNKWLLTAFDSSCLWVADRYK--LTSALVVD---PLYLQHGHEGAIDYRHWGIPLSRRFR-SLKLWFVIRT 653 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P~g~G~llvR~~~~--L~~~l~~~---~~Yl~~~~e~~~~~~~~ti~~SRr~~-aL~lW~~L~~ 653 (891)
+.+|.+.+++|||++.|-|.++++++++.. +.+..... +.|+.-... .......+-..+=... .+.+-.+++.
T Consensus 174 ~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~-~~~~~~~~t~~tp~i~~i~~l~~al~~ 252 (361)
T TIGR01366 174 AETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTA-VDNSLKNQTYNTPAIATLALLAEQIDW 252 (361)
T ss_pred HHCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHH-HhccccCCCCCCchHHHHHHHHHHHHH
Confidence 348999999999999997877777776532 11111000 112110000 0000000000111111 1356677888
Q ss_pred HHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-C--cee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 654 YGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISND-V--RLG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 654 lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~--~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
+-.+ |++.+.++..++++++.+.|++.+.++++.+ + .+. +.+|.+. . +.....+.+.|.+.|+....+.
T Consensus 253 l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~-~-----g~~~~~v~~~L~~~gI~i~~~~ 326 (361)
T TIGR01366 253 MNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFV-D-----DIDAATVAKILRANGIVDTEPY 326 (361)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECC-C-----ccCHHHHHHHHHHCCCeeccCc
Confidence 8777 6999999999999999999999987776532 2 121 2334442 2 2245678888988898753332
Q ss_pred cccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 SQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 ~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..-+..++ ++.+.++|.+||++++++|++++
T Consensus 327 ~~l~~~~vRis~~~~~t~~di~~l~~al~~~~ 358 (361)
T TIGR01366 327 RKLGRNQLRVAMFPAIDPDDVEALTECVDWVV 358 (361)
T ss_pred cccCCCcEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 11123456 99999999999999999999875
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-06 Score=98.09 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=59.8
Q ss_pred EEEecCCCChHHHHHHH-H---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM-M---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+....+. . .+.++..++. .|++++++++++. +-+|.+...+|.+|.+-|+++|.+
T Consensus 102 ~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~-----~d~~~l~~~i~~~------tklV~lesp~NptG~v~dl~~I~~ 170 (386)
T PRK06767 102 HIICSNGLYGCTYGFLEVLEEKFMITHSFCDM-----ETEADIENKIRPN------TKLIFVETPINPTMKLIDLKQVIR 170 (386)
T ss_pred EEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC-----CCHHHHHHhhCcC------ceEEEEeCCCCCCceecCHHHHHH
Confidence 37777777766655442 2 2344544443 3789999888653 347788888999999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++++|.||
T Consensus 171 la~~~g~~vivD~a~ 185 (386)
T PRK06767 171 VAKRNGLLVIVDNTF 185 (386)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999888888888
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-06 Score=99.16 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=116.7
Q ss_pred EEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+...... +...+.+++.++. .|+++|++.+++. +-+|.+..-+|.+|.+.|+++|+++
T Consensus 102 Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~~i~~~------tklV~l~~P~NPtG~v~dl~~I~~l 170 (405)
T PRK08776 102 LVVPHDAYGGSWRLFNALAKKGHFALITADL-----TDPRSLADALAQS------PKLVLIETPSNPLLRITDLRFVIEA 170 (405)
T ss_pred EEEccCCchHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCccCCHHHHHHH
Confidence 56666666553222 2334567777654 3889999888643 3467777888999999999999999
Q ss_pred HHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhh
Q psy852 221 AKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGV 300 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (891)
|+++|+++.+|.+|.....
T Consensus 171 a~~~gi~vIvD~a~a~~~~------------------------------------------------------------- 189 (405)
T PRK08776 171 AHKVGALTVVDNTFLSPAL------------------------------------------------------------- 189 (405)
T ss_pred HHHcCCEEEEECCCccccc-------------------------------------------------------------
Confidence 9999998889988821100
Q ss_pred HHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--c
Q psy852 301 LLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD--S 378 (891)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~--~ 378 (891)
. ++. . ..+|-+..++||++.+|-+ .
T Consensus 190 ----------------------------------------------~----~pl-~--~gaDivv~S~tK~l~g~~~~~~ 216 (405)
T PRK08776 190 ----------------------------------------------Q----KPL-E--FGADLVLHSTTKYINGHSDVVG 216 (405)
T ss_pred ----------------------------------------------C----Ccc-c--ccCCEEEecCceeecCCCCceE
Confidence 0 000 0 1368899999999998864 5
Q ss_pred eEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhcc
Q psy852 379 SCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR 458 (891)
Q Consensus 379 g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~ 458 (891)
|+++.+++.... .+.....+ .+. ...++..|..+ .|.+.+..++++..+++..+++.|++
T Consensus 217 G~vv~~~~~l~~-~l~~~~~~-------------~g~----~~s~~~a~l~~--~gl~tl~~r~~~~~~na~~la~~L~~ 276 (405)
T PRK08776 217 GAVVARDAELHQ-QLVWWANA-------------LGL----TGSPFDAFLTL--RGLRTLDARLRVHQENADAIAALLDG 276 (405)
T ss_pred EEEEeCCHHHHH-HHHHHHHh-------------cCC----CCCHHHHHHHH--hhhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 777776543222 11100000 011 12456677766 46677888999999999999999999
Q ss_pred CCcccc
Q psy852 459 DPRFEI 464 (891)
Q Consensus 459 ~~~~eV 464 (891)
+|.++-
T Consensus 277 ~p~v~~ 282 (405)
T PRK08776 277 HAAVNQ 282 (405)
T ss_pred CCCeeE
Confidence 987653
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=6e-06 Score=94.08 Aligned_cols=263 Identities=14% Similarity=0.158 Sum_probs=150.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCcCHHHHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLR 547 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~mD~~~Le 547 (891)
.++|++++..++.+..- .+.-.|+++...|.+...++...|.+++.+++++ ++.+|+++|+
T Consensus 50 ~~sgt~al~~~l~al~~------------------~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~ 111 (380)
T TIGR03588 50 FNSATSALHIACLALGV------------------GPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALE 111 (380)
T ss_pred EcCHHHHHHHHHHHcCC------------------CCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHH
Confidence 34678887777665310 0122488888889998888888899999999964 6889999999
Q ss_pred HHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcCC-----CCccEEEEcCc--ccCCccc
Q psy852 548 QVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQGI-----EYADSFNVNVN--KWLLTAF 597 (891)
Q Consensus 548 ~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldGi-----~~aDSIs~d~H--K~L~~P~ 597 (891)
++|++.......-++++...|+.. |+++ .+|. +..|...+|+| ||+.+|
T Consensus 112 ~~i~~~~~~~t~~v~~~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~- 190 (380)
T TIGR03588 112 KKLAAAKGKLPKAIVPVDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTA- 190 (380)
T ss_pred HHhhcccCCCceEEEEeCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCccccc-
Confidence 999842111112333444567654 4331 1110 14599999998 888776
Q ss_pred ccEEEEEeCCccchhhhccCCCccccCC-------CC--CccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHH
Q psy852 598 DSSCLWVADRYKLTSALVVDPLYLQHGH-------EG--AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668 (891)
Q Consensus 598 g~G~llvR~~~~L~~~l~~~~~Yl~~~~-------e~--~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~ 668 (891)
.-|++++.+++.....-........... .. .+.....+... +...+. +++-....+.+.+++++..+
T Consensus 191 ~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~--~m~~l~--aa~g~~qL~~l~~~~~~r~~ 266 (380)
T TIGR03588 191 EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNY--RMTDIQ--AALGLSQLKKLDRFVAKRRE 266 (380)
T ss_pred CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeecccccc--CccHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3455666665433221110000000000 00 00000111111 112221 11111224567889999999
Q ss_pred HHHHHHHHhccCCCcEEeCCCc-----eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe---ecc----cc---C-
Q psy852 669 LAKLFEGKVRRDPRFEISNDVR-----LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV---PAS----QE---Q- 732 (891)
Q Consensus 669 lA~~L~~~L~~~~~~eil~~~~-----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s---~s~----~~---g- 732 (891)
+++++.+.|.+++++++..++. ..+..+++.... ......+.+.|.++|+.... +.. .. .
T Consensus 267 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~ 342 (380)
T TIGR03588 267 IAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEF----GCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGD 342 (380)
T ss_pred HHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcC----CCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCc
Confidence 9999999999998877654321 123333343210 12456888889888875221 100 00 0
Q ss_pred ----------CeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 733 ----------NDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 733 ----------~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
..++ +.+++..|++||++++++|+++
T Consensus 343 ~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 343 GDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKV 379 (380)
T ss_pred CCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 1345 6678889999999999999875
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.8e-07 Score=101.60 Aligned_cols=80 Identities=8% Similarity=0.056 Sum_probs=64.2
Q ss_pred EEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++..+|.+.... +...|.+++.|+.+ |++++++++++.+ -+|+++..+|.+|.+.|+++|.++
T Consensus 95 Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~t------klV~l~~p~NptG~~~dl~~I~~l 163 (390)
T PRK08064 95 VLISEDVYGGTYRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIKPNT------KLFYVETPSNPLLKVTDIRGVVKL 163 (390)
T ss_pred EEEccCccchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCc------eEEEEECCCCCCcEeccHHHHHHH
Confidence 77777778755433 33457788888864 6888988886543 488889999999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|+||+
T Consensus 164 a~~~g~~vvvD~a~~ 178 (390)
T PRK08064 164 AKAIGCLTFVDNTFL 178 (390)
T ss_pred HHHcCCEEEEECCCC
Confidence 999999999999883
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.7e-06 Score=95.61 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=70.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|++.+.+|++...++.+.+.+++.++. +|+++|++.+++....+..+.+|+.....+.+|.+.|+++|.++|++
T Consensus 128 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~ 202 (397)
T PRK06939 128 AIISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADK 202 (397)
T ss_pred EEEEEhhhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHH
Confidence 4778889999999888777777777754 58999999887643223345677766677889999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+++++++|.+|+
T Consensus 203 ~~~~li~De~~~ 214 (397)
T PRK06939 203 YDALVMVDDSHA 214 (397)
T ss_pred hCCEEEEECccc
Confidence 999999999993
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.9e-06 Score=91.57 Aligned_cols=219 Identities=7% Similarity=-0.004 Sum_probs=131.6
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc--------hhh
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS--------CYR 574 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~--------c~~ 574 (891)
.|+++...|.++..++...|.+++.++. +|+++|+++|++.... ..+.+|+. ..|+.. |++
T Consensus 87 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~-~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~ 160 (349)
T cd06454 87 LIISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREARRP-YGKKLIVTEGVYSMDGDIAPLPELVDLAKK 160 (349)
T ss_pred EEEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhhcc-CCCeEEEEeccccCCCCccCHHHHHHHHHH
Confidence 4777888999998888888888887763 5889999999864311 12223322 234433 433
Q ss_pred h-----hcC--------------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 575 K-----SQG--------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 575 ~-----ldG--------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
+ +|+ ...+|.+..++||+++.|. |+++. ++..+.........|..
T Consensus 161 ~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g--G~i~~-~~~~~~~~~~~~~~~~~------- 230 (349)
T cd06454 161 YGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG--GYIAG-SKELIDYLRSYARGFIF------- 230 (349)
T ss_pred cCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC--CEEEC-CHHHHHHHHHhchhhhc-------
Confidence 1 111 1246888999999998643 55544 33333221111111110
Q ss_pred cccCCcccccc-cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhh
Q psy852 630 DYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQ 708 (891)
Q Consensus 630 ~~~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ 708 (891)
.++- ....+.+..+++.+-. +.+..++..++++++.+.|++. +++++.++...+.++.+.+ +.
T Consensus 231 -------~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~------~~ 294 (349)
T cd06454 231 -------STSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDD------PA 294 (349)
T ss_pred -------cCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCC------hH
Confidence 0011 1112233344444322 4566778889999999999876 6777665555555565431 22
Q ss_pred hHHHHHHHHHhCCcEEEeecc---ccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 709 NNRKLLEDINASGRLHMVPAS---QEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 709 ln~~L~~~L~~~G~~~~s~s~---~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
..+++.+.|.++|+....... ..+...+ ++++.+++++||+++++.|+++
T Consensus 295 ~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 295 KAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 457889999888987543211 1223566 9999999999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-06 Score=101.08 Aligned_cols=81 Identities=15% Similarity=0.025 Sum_probs=62.8
Q ss_pred EEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+....+. ..+.+++.++ |. -|++++++++++. +.+|++...+|.+|.+-|+++|+++
T Consensus 111 Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~---~d~e~l~~ai~~~------tklV~ie~~sNp~G~v~Dl~~I~~l 180 (436)
T PRK07812 111 IVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP---DDLDAWRAAVRPN------TKAFFAETISNPQIDVLDIPGVAEV 180 (436)
T ss_pred EEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---CCHHHHHHhCCCC------CeEEEEECCCCCCCeecCHHHHHHH
Confidence 6777777877665442 2455666664 33 2899999888654 3588888899999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.||+|++
T Consensus 181 a~~~gi~liVD~t~a 195 (436)
T PRK07812 181 AHEAGVPLIVDNTIA 195 (436)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999883
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-06 Score=96.07 Aligned_cols=246 Identities=11% Similarity=0.022 Sum_probs=136.7
Q ss_pred CcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH-----HHHcCceEEEecC--CC-CCCcC
Q psy852 471 SASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA-----AMMAFVRLKILEP--DD-KNSLR 542 (891)
Q Consensus 471 ggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka-----a~l~gv~v~~Vp~--d~-~G~mD 542 (891)
+|++++..++.+.- + +.-.|+++...|.+.... +...|.+++.++. +. ++.+|
T Consensus 89 sgt~a~~~~l~~l~----~---------------~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id 149 (402)
T cd00378 89 SGSQANLAVYFALL----E---------------PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLID 149 (402)
T ss_pred CcHHHHHHHHHHhc----C---------------CCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcC
Confidence 56888887666541 1 111355555555433221 3445666666665 32 69999
Q ss_pred HHHHHHHHHhhhhcCCccEEE-EecCCccc--------hhhh-----hcC---------------CCCccEEEEcCcccC
Q psy852 543 GATLRQVMQQDETMGYIPFFV-STTLGTTS--------CYRK-----SQG---------------IEYADSFNVNVNKWL 593 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~V-vataGTT~--------c~~~-----ldG---------------i~~aDSIs~d~HK~L 593 (891)
+++|++++.+.. ...+++ ....|+.. |+++ +|+ +..+|.+..++|||+
T Consensus 150 ~~~l~~~i~~~~---~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l 226 (402)
T cd00378 150 YDALEKMALEFK---PKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTL 226 (402)
T ss_pred HHHHHHHHHhCC---CCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCC
Confidence 999999996421 112222 22334432 3331 222 124698999999999
Q ss_pred CcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy852 594 LTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673 (891)
Q Consensus 594 ~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L 673 (891)
.+|.+ |++++.++............+... + +-......+..++..+-..++.+..++..++++++
T Consensus 227 ~G~~g-g~i~~~~~~~~~~l~~~~~~~~~~-----------~---~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 291 (402)
T cd00378 227 RGPRG-GLILTRKGELAKKINSAVFPGLQG-----------G---PHLHVIAAKAVALKEALEPEFKAYAKQVVENAKAL 291 (402)
T ss_pred CCCCc-eEEEeccHHHHHHHHHHhCccccC-----------C---chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77765 555555433332211111111100 0 00001111222233333336677888899999999
Q ss_pred HHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe---eccc---cCCeEE-EEecC----
Q psy852 674 EGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV---PASQ---EQNDEV-FELQE---- 741 (891)
Q Consensus 674 ~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s---~s~~---~g~~~l-~sv~~---- 741 (891)
.+.|++. +++++. +...+.+++++.+.. .....+.+.|.+.|+.... +... .+...+ ++++.
T Consensus 292 ~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~-----~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~ 365 (402)
T cd00378 292 AEALKER-GFKVVSGGTDNHLVLVDLRPKG-----ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTR 365 (402)
T ss_pred HHHHHhC-CCeEeecCCCCeEEEEeCCccC-----CCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHh
Confidence 9999886 788764 345678888886331 1234566667778877432 1111 123345 77655
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 742 ~tT~edId~li~~L~ei~ 759 (891)
..+++||+.+++.|+++.
T Consensus 366 ~~~~~di~~~~~~l~~~~ 383 (402)
T cd00378 366 GMGEEEMEEIADFIARAL 383 (402)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 347999999999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.9e-07 Score=100.60 Aligned_cols=281 Identities=16% Similarity=0.174 Sum_probs=149.0
Q ss_pred cCCCCCCH-HHHHHHHHHHhcCCCC-----Cc-cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 23 YFPSGNSY-PSVLADMLSDAIGCIG-----FS-WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 23 ~~~~~~~~-~~~~~~~l~~~~n~~~-----~~-~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
-.++-+.. |.+...+-+.+.|-.. .. |.......++|..+.+...+|||.+++.++ .|
T Consensus 25 LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~---------------an 89 (399)
T PF00464_consen 25 LIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWY---------------AN 89 (399)
T ss_dssp -CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEE---------------EE
T ss_pred ccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccce---------------EE
Confidence 34444433 4444444444444332 22 234577889999999999999999855321 00
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEe-cCCCChHHHHHH-H-----H-cCCeEE
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYC-SKEAHSCVEKAA-M-----M-AFVRLK 167 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~-S~~~H~Sv~kaa-~-----~-~~~~v~ 167 (891)
+. ..+|+.++......+.+.. .+++.+- +.-.|.|--... . . ...+++
T Consensus 90 ----vq-------p~SGs~An~av~~aLl~pG-------------D~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~ 145 (399)
T PF00464_consen 90 ----VQ-------PHSGSQANLAVYMALLKPG-------------DTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESV 145 (399)
T ss_dssp --------------SSHHHHHHHHHHHHT-TT--------------EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEE
T ss_pred ----ee-------cCCchHHHHHHHHHHHhhc-------------CcEEecChhhcccccccccccccccccccceEEEE
Confidence 11 1466544333333332211 1111221 233465543222 1 1 134777
Q ss_pred EEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCc
Q psy852 168 ILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRP 246 (891)
Q Consensus 168 ~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~ 246 (891)
..++| +++.||.+++++.+++.+ |-+|++ |.+..--.-|++++.+||++.|..+++|+|+=
T Consensus 146 ~y~~d~~~~~ID~d~l~~~a~~~k-----PklIi~--G~S~y~~~~d~~~~reIad~vga~l~~D~sH~----------- 207 (399)
T PF00464_consen 146 PYPVDPDTGLIDYDELEKLAKEHK-----PKLIIC--GASSYPRPIDFKRFREIADEVGAYLMADISHI----------- 207 (399)
T ss_dssp EEEB-TTTSSB-HHHHHHHHHHH-------SEEEE--E-SSTSS---HHHHHHHHHHTT-EEEEE-TTT-----------
T ss_pred eeeeecCCCeECHHHHHHHHhhcC-----CCEEEE--CchhccCccCHHHHHHHHHhcCcEEEeccccc-----------
Confidence 88998 789999999999998764 656654 44445566889999999999999999999880
Q ss_pred cCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccc
Q psy852 247 FMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSY 326 (891)
Q Consensus 247 ~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (891)
.|+
T Consensus 208 --~GL--------------------------------------------------------------------------- 210 (399)
T PF00464_consen 208 --AGL--------------------------------------------------------------------------- 210 (399)
T ss_dssp --HHH---------------------------------------------------------------------------
T ss_pred --ccc---------------------------------------------------------------------------
Confidence 010
Q ss_pred cccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcc--cCccccCCCC
Q psy852 327 RDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV--VDPLYLQHGH 404 (891)
Q Consensus 327 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~--~~~~y~~~~~ 404 (891)
-+++.+-+ -+++||.++.+.||.+.+|-+ |+++++...+-...-. .++.|-
T Consensus 211 --------------Ia~g~~~~--------P~~~ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~l~---- 263 (399)
T PF00464_consen 211 --------------IAGGLFPN--------PFPYADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEIDEELA---- 263 (399)
T ss_dssp --------------HHTTSS----------GCCTSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHH----
T ss_pred --------------eehheecC--------ccccceEEEeeccccccccCc-eEEEEcCCccccCCcccccHHHHH----
Confidence 01111111 134689999999999999987 8888883221100000 000000
Q ss_pred CCcccc-cccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 405 EGAIDY-RHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 405 ~~~~~~-~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
..++. .-.+++++-.. ...++-.+++..-...+.++.++.+++|+.|++.|.+ .|++|+.
T Consensus 264 -~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~-~G~~v~~ 325 (399)
T PF00464_consen 264 -EKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQE-RGFKVVT 325 (399)
T ss_dssp -HHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TT-EEGG
T ss_pred -HHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhh-CCcEEEE
Confidence 00110 01122333333 3445667777777778899999999999999999988 5889884
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.1e-08 Score=102.23 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=64.6
Q ss_pred EEecCCCChHHHHHH---HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcce--EEEeecccCccc-cccCHHH--
Q psy852 145 AYCSKEAHSCVEKAA---MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPF--FVSTTLGTTSCC-SFDNLAE-- 216 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa---~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~--~V~~t~Gtt~~G-avDpl~~-- 216 (891)
|++...+|--...+. .+++..++.|...++|.||++++|+++....-.-+-|. +|+.--=-+.+| .+-||++
T Consensus 99 ii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~ 178 (384)
T KOG1368|consen 99 IIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELD 178 (384)
T ss_pred EEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHH
Confidence 777788885544433 46788999999999999999999999985432222333 444432223335 8888775
Q ss_pred -HHHHHHHcCCceeeeccc
Q psy852 217 -IGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 217 -I~~i~~~~~~~lHvDaA~ 234 (891)
|.++|+++|+.+|+|||-
T Consensus 179 ~v~~lak~~glkLH~DGAR 197 (384)
T KOG1368|consen 179 RVKALAKRHGLKLHMDGAR 197 (384)
T ss_pred HHHHHHhccCCeeecchhh
Confidence 556899999999999997
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=102.70 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=60.5
Q ss_pred EEecCCCCh------HHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCc--cc--cccCH
Q psy852 145 AYCSKEAHS------CVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--CC--SFDNL 214 (891)
Q Consensus 145 v~~S~~~H~------Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~--~G--avDpl 214 (891)
|++|..+|. ++...+...|.+++.++++ +..|+++++++|.+.+ .+|..+.-+|. .| .+-|+
T Consensus 163 VIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~T------~lv~~~h~sN~~~~G~~~~~dl 234 (454)
T TIGR00474 163 VIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITENT------ALLLKVHTSNYRIVGFTEEVSI 234 (454)
T ss_pred EEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcCC------EEEEEEccCcccccCCCCCCCH
Confidence 788877663 3433344467788888654 4568999999997654 35555555554 46 57899
Q ss_pred HHHHHHHHHcCCceeeecccc
Q psy852 215 AEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 215 ~~I~~i~~~~~~~lHvDaA~G 235 (891)
++|+++|+++|+.+.+|++.|
T Consensus 235 ~~I~~la~~~g~~vivD~~sG 255 (454)
T TIGR00474 235 AELVALGREHGLPVMEDLGSG 255 (454)
T ss_pred HHHHHHHHHcCCeEEEECCCc
Confidence 999999999999999999864
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-06 Score=99.59 Aligned_cols=81 Identities=16% Similarity=0.100 Sum_probs=61.9
Q ss_pred EEEecCCCChHHHHHHHH---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
.|+++...|.+....+.. .+.+++.++ +|+++|++.+++. .+-+|.+...+|.+|.+-|+++|+++
T Consensus 94 ~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~------~d~~~l~~~i~~~-----~tklV~ie~p~NPtG~v~dl~~I~~l 162 (385)
T PRK08574 94 RVVLPMEAYGTTLRLLKSLEKFGVKVVLAY------PSTEDIIEAIKEG-----RTKLVFIETMTNPTLKVIDVPEVAKA 162 (385)
T ss_pred EEEEcCCCchhHHHHHHHhhccCcEEEEEC------CCHHHHHHhcCcc-----CceEEEEECCCCCCCEecCHHHHHHH
Confidence 377888889888776632 345665553 3578888888651 13466678888999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.||+
T Consensus 163 a~~~gi~livD~t~a 177 (385)
T PRK08574 163 AKELGAILVVDNTFA 177 (385)
T ss_pred HHHcCCEEEEECCCC
Confidence 999999999999883
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.5e-06 Score=93.90 Aligned_cols=262 Identities=14% Similarity=0.141 Sum_probs=164.6
Q ss_pred HHHHHHHHHHhcC-----CCCCc-cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q psy852 31 PSVLADMLSDAIG-----CIGFS-WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPAN 104 (891)
Q Consensus 31 ~~~~~~~l~~~~n-----~~~~~-~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~ 104 (891)
+++...+-+.+.| -++-. |..+-...++|..+++...+|||.......
T Consensus 40 ~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQ-------------------------- 93 (413)
T COG0112 40 PAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQ-------------------------- 93 (413)
T ss_pred HHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccC--------------------------
Confidence 4555444444443 23333 346778899999999999999999754211
Q ss_pred CCCcccchhHHHHHHHHHHHHhcccc---CCccccccccCCeEEEecCCCChHHHHHHHHcC--CeEEEEecC-CCCccc
Q psy852 105 QPQSLGGGVIQSVQNIIVLTRGQKKI---HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF--VRLKILEPD-DKNSLR 178 (891)
Q Consensus 105 ~~~~~~gGt~~~~~~~~~~ar~~~~~---~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~--~~v~~V~~d-~~g~id 178 (891)
-.+|+..|.+....+ -+.+. ...+..|. -.+|-+ ...+.| .+++.-++| +++.||
T Consensus 94 ----PhSGs~AN~av~~Al--l~pGDtimgm~l~~GG----------HltHg~---~v~~sG~~~~~v~Y~vd~et~~ID 154 (413)
T COG0112 94 ----PHSGSQANQAVYLAL--LQPGDTIMGLDLSHGG----------HLTHGS---PVNFSGKLFNVVSYGVDPETGLID 154 (413)
T ss_pred ----CCCchHHHHHHHHHH--cCCCCeEecccCCCCC----------cccCCC---CCCccceeEEeEecccccccCccC
Confidence 134553333222222 22110 01111111 112321 111111 467777899 569999
Q ss_pred HHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCC
Q psy852 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLH 258 (891)
Q Consensus 179 ~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~ 258 (891)
.|++++.+.+.+ |-+|+ +|.+..--.-|++++.+||++.|.++-+|.|+ +.|+
T Consensus 155 yD~~~k~a~e~k-----PK~ii--~G~SaY~r~id~~~~reIad~VGA~L~~DmAH-------------iaGL------- 207 (413)
T COG0112 155 YDEVEKLAKEVK-----PKLII--AGGSAYSRPIDFKRFREIADEVGAYLMVDMAH-------------VAGL------- 207 (413)
T ss_pred HHHHHHHHHHhC-----CCEEE--ECccccccccCHHHHHHHHHHhCceEEehHHH-------------HHHH-------
Confidence 999999998875 66655 47777788889999999999999999999988 1111
Q ss_pred CCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEee
Q psy852 259 LSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVD 338 (891)
Q Consensus 259 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 338 (891)
T Consensus 208 -------------------------------------------------------------------------------- 207 (413)
T COG0112 208 -------------------------------------------------------------------------------- 207 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCC
Q psy852 339 GAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLS 418 (891)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~s 418 (891)
-+++.+. +-+++||-+|-+.||.+.+|-+ |++++++.+..+. + +..-. +++++.
T Consensus 208 --VA~G~~p--------~P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kk-i--n~aVF------------Pg~qgg 261 (413)
T COG0112 208 --IAGGVHP--------NPLPHADVVTTTTHKTLRGPRG-GIILTNDEELAKK-I--NSAVF------------PGLQGG 261 (413)
T ss_pred --HhcccCC--------CCCCccceEeCCcccCCCCCCc-eEEEeccHHHHHH-h--hhhcC------------CccCCC
Confidence 0111111 2356799999999999999998 8888887322221 1 11111 122222
Q ss_pred CChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchh
Q psy852 419 RRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASEC 475 (891)
Q Consensus 419 r~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsea 475 (891)
-... ..+.-.+++---.-+|.+..++.+++|+.|++.|.+ .|+++++ |+|+.
T Consensus 262 pl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~-~G~~vvs----GgTdn 314 (413)
T COG0112 262 PLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKE-RGFKVVS----GGTDN 314 (413)
T ss_pred hHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH-cCCeEec----CCccc
Confidence 2222 334556677777889999999999999999999987 7888884 66654
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.9e-06 Score=96.49 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=67.9
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcC-------CcceEEEeecccCccccccCHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG-------YIPFFVSTTLGTTSCCSFDNLAE 216 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g-------~~p~~V~~t~Gtt~~GavDpl~~ 216 (891)
.|++.+.+|.|+..++.+.|.+++.++.+ |+++|++.+++....+ ...++|++....+.+|.+.|+++
T Consensus 187 ~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~ 261 (489)
T PLN02483 187 LIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPE 261 (489)
T ss_pred EEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHH
Confidence 47888999999999998888899999865 5677877776432211 11235555555588999999999
Q ss_pred HHHHHHHcCCceeeecccc
Q psy852 217 IGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 217 I~~i~~~~~~~lHvDaA~G 235 (891)
|+++|++|++++.+|.|++
T Consensus 262 I~~la~~~~~~livDEa~s 280 (489)
T PLN02483 262 IVAVCKKYKAYVYLDEAHS 280 (489)
T ss_pred HHHHHHHcCCEEEEECcCc
Confidence 9999999999999999994
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-06 Score=97.67 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=61.6
Q ss_pred EEecCCCChHHHHHH-HH---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA-MM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa-~~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+....+ .. .+.+++.++. .|+++|++.+.+. +-+|.+...+|.+|.+.|+++|+++
T Consensus 103 Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~~~dl~~I~~l 171 (388)
T PRK07811 103 IVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDAVRAAITPR------TKLIWVETPTNPLLSITDIAALAEL 171 (388)
T ss_pred EEEcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHHHHHhcCcC------CeEEEEECCCCCcceecCHHHHHHH
Confidence 777777877655444 22 2456666554 4899999988664 3477788888999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.||+
T Consensus 172 a~~~gi~lIvD~a~a 186 (388)
T PRK07811 172 AHDAGAKVVVDNTFA 186 (388)
T ss_pred HHHcCCEEEEECCCC
Confidence 999999999998883
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.8e-06 Score=95.88 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=67.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++...|.|+..++...+.++..++.+ |.++|++.++.... ..+.+|+++..+|.+|.+-|+++|.++|++
T Consensus 134 ~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~--~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~ 206 (410)
T PRK13392 134 VILSDALNHASMIEGIRRSGAEKQVFRHN-----DLADLEEQLASVDP--DRPKLIAFESVYSMDGDIAPIEAICDLADR 206 (410)
T ss_pred EEEEehhhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhccC--CCCEEEEEeCCCCCCcccccHHHHHHHHHH
Confidence 57777779999988887777777766532 56677777754321 235688888899999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+++++.+|.||+
T Consensus 207 ~~~~livDea~~ 218 (410)
T PRK13392 207 YNALTYVDEVHA 218 (410)
T ss_pred cCCEEEEECCcc
Confidence 999999999995
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-06 Score=98.52 Aligned_cols=81 Identities=11% Similarity=0.179 Sum_probs=61.6
Q ss_pred EEEecCCCChHHHHHH-H---HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa-~---~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+....+ . ..+.+++.++. .|++++++++.+. +-+|.++..+|.+|.+-|+++|++
T Consensus 94 ~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-----~d~e~l~~~i~~~------tklV~lesP~NPtG~v~dl~~I~~ 162 (388)
T PRK08861 94 LIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ-----SDAAALDAALAKK------PKLILLETPSNPLVRVVDIAELCQ 162 (388)
T ss_pred EEEEcCCchHHHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCcccCHHHHHH
Confidence 3777777777655443 2 23456666642 4889999888654 347888888999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++.+|.||+
T Consensus 163 la~~~gi~vIvDea~~ 178 (388)
T PRK08861 163 KAKAVGALVAVDNTFL 178 (388)
T ss_pred HHHHcCCEEEEECCcc
Confidence 9999998888888883
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-06 Score=96.92 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=60.3
Q ss_pred EEecCCCChHHH----HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~----kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+.. +.+...|.+++.++.+ |++++++.+. . +-+|.+..-|+.++.+.|+++|+++
T Consensus 105 Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~-~------tklV~ie~pt~~~~~~~dl~~i~~l 172 (389)
T PRK05968 105 IVAVRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKALP-G------AKLLYLESPTSWVFELQDVAALAAL 172 (389)
T ss_pred EEEeCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhcc-c------CCEEEEECCCCCCCcHHHHHHHHHH
Confidence 677777777653 3334457788888654 8899988872 2 2366667788889999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+.+++|+|++
T Consensus 173 a~~~gi~vivD~a~a 187 (389)
T PRK05968 173 AKRHGVVTMIDNSWA 187 (389)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999883
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-06 Score=99.61 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=65.3
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+....+. -.|+++.+++. .|.++++++|++++ -+|.+...+|.+|.+-||++|++
T Consensus 103 ~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~~~T------rlV~~EtpsNp~~~v~DI~~Ia~ 171 (395)
T PRK08114 103 HVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP-----LIGADIAKLIQPNT------KVVFLESPGSITMEVHDVPAIVA 171 (395)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCCCc------eEEEEECCCCCCCEeecHHHHHH
Confidence 37888888888876652 24678888764 36788999887653 58999999999999999999999
Q ss_pred HHHHcC--Cceeeecccc
Q psy852 220 VAKEFD--VWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~--~~lHvDaA~G 235 (891)
+|++++ +.+.||++|+
T Consensus 172 ia~~~g~g~~lvVDnT~a 189 (395)
T PRK08114 172 AVRSVNPDAVIMIDNTWA 189 (395)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 999984 8888888883
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-06 Score=93.92 Aligned_cols=86 Identities=13% Similarity=0.124 Sum_probs=67.1
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.+|+.....|.|+..++...+.++..++. .|+++|++.++... ...+.+|++...++.+|.+.|+++|.++|+
T Consensus 133 ~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~--~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~ 205 (407)
T PRK09064 133 CVIFSDELNHASMIEGIRRSRCEKHIFRH-----NDVAHLEELLAAAD--PDRPKLIAFESVYSMDGDIAPIAEICDLAD 205 (407)
T ss_pred CEEEEeCcchHHHHHHHHHcCCcEEEECC-----CCHHHHHHHHHhcc--CCCCeEEEEeCCCCCCccccCHHHHHHHHH
Confidence 35666677899998887766666655553 37889998886431 123567888888999999999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++++|.|++
T Consensus 206 ~~~~~livDEa~~ 218 (407)
T PRK09064 206 KYNALTYLDEVHA 218 (407)
T ss_pred HcCCEEEEECCCc
Confidence 9999999999995
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-06 Score=97.84 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=63.4
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+....+ ...|.+++.++. .|+++++++|++. +-+|.+..-+|.+|.+-|+++|++
T Consensus 105 ~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~v~dl~~I~~ 173 (398)
T PRK08249 105 RVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIAKG------CDLLYLETPTNPTLKIVDIERLAA 173 (398)
T ss_pred EEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCccCCHHHHHH
Confidence 3788888888764433 234666666553 5899999988754 347777788899999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++++|.||+
T Consensus 174 la~~~gi~livD~t~a 189 (398)
T PRK08249 174 AAKKVGALVVVDNTFA 189 (398)
T ss_pred HHHHcCCEEEEECCcC
Confidence 9999999999999984
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-06 Score=97.07 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=63.4
Q ss_pred EEecCCCC---hHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 145 AYCSKEAH---SCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H---~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
|+++...| .++...+...|.+++.++++ |+++|++.+++. +.+|++...+|.+|.+.|+++|+++|
T Consensus 89 Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-----d~e~l~~~l~~~------tklV~vesp~NptG~v~dl~~I~~la 157 (397)
T PRK05939 89 LVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-----DVQNVAAAIRPN------TRMVFVETIANPGTQVADLAGIGALC 157 (397)
T ss_pred EEECCCccccHHHHHHHHHhcCCEEEEECCC-----CHHHHHHhCCCC------CeEEEEECCCCCCCCHHhHHHHHHHH
Confidence 66666654 34445554567788888763 899999988654 35778888999999999999999999
Q ss_pred HHcCCceeeecccc
Q psy852 222 KEFDVWLHVDGAYA 235 (891)
Q Consensus 222 ~~~~~~lHvDaA~G 235 (891)
+++|+++++|++|+
T Consensus 158 ~~~gi~livD~t~a 171 (397)
T PRK05939 158 RERGLLYVVDNTMT 171 (397)
T ss_pred HHcCCEEEEECCcc
Confidence 99999999999883
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-06 Score=95.76 Aligned_cols=80 Identities=8% Similarity=0.005 Sum_probs=62.2
Q ss_pred EEEecCCCChHHH----HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~----kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+.. +.+...|.+++.++.+ |++++++++++.+ -+|.+...+|.+|.+-|+++|++
T Consensus 111 ~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~t------klV~~esp~Nptg~v~dl~~I~~ 179 (403)
T PRK07810 111 RLVAARSLFGSCFVVCNEILPRWGVETVFVDGE-----DLSQWEEALSVPT------QAVFFETPSNPMQSLVDIAAVSE 179 (403)
T ss_pred EEEEccCCcchHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcCc------eEEEEECCCCCCCeecCHHHHHH
Confidence 3777766663332 2333457788888743 8999999987653 47888889999999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++.||.||
T Consensus 180 la~~~g~~vivD~a~ 194 (403)
T PRK07810 180 LAHAAGAKVVLDNVF 194 (403)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999988
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.4e-06 Score=94.83 Aligned_cols=245 Identities=9% Similarity=0.045 Sum_probs=139.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-HHHHHHH--cCceE--EEecCCC-CCCcC
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC-VEKAAMM--AFVRL--KILEPDD-KNSLR 542 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S-v~Kaa~l--~gv~v--~~Vp~d~-~G~mD 542 (891)
.++|+.+|..++.+. .+ +.-.|+++...|.+ +...+.. .+..+ +..+.|. .+.+|
T Consensus 96 ~~SG~~A~~~~l~al----~~---------------~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 156 (416)
T PRK13034 96 PHSGSQANGAVYLAL----LK---------------PGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLID 156 (416)
T ss_pred cCCcHHHHHHHHHHh----cC---------------CCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcC
Confidence 457788888777663 11 22358888888877 3333332 12222 3444443 47799
Q ss_pred HHHHHHHHHhhhhcCCccEEEEec---CCccc--------hhhh-----hcC---------------CCCccEEEEcCcc
Q psy852 543 GATLRQVMQQDETMGYIPFFVSTT---LGTTS--------CYRK-----SQG---------------IEYADSFNVNVNK 591 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c~~~-----ldG---------------i~~aDSIs~d~HK 591 (891)
+++|++.++... +-+|+.+ .|... |+++ +|+ +..+|.++++.||
T Consensus 157 ~~~le~~l~~~~-----~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K 231 (416)
T PRK13034 157 YDEVEELAKEHK-----PKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHK 231 (416)
T ss_pred HHHHHHHHhhcC-----CeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcc
Confidence 999999986521 2223322 23221 3331 221 2568999999999
Q ss_pred cCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc-cchHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy852 592 WLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELA 670 (891)
Q Consensus 592 ~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA 670 (891)
|+.+|.| |+++..++. +...+.. ++.+ +...+... ....+...+...-..+..+..++..+++
T Consensus 232 ~l~g~~G-G~v~~~~~~-~~~~~~~---~~~~-----------~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a 295 (416)
T PRK13034 232 TLRGPRG-GMILTNDEE-IAKKINS---AVFP-----------GLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANA 295 (416)
T ss_pred cCCCCCC-eEEEECcHH-HHHHHHh---hcCC-----------cccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 9988886 555554442 2111110 0111 00111111 1111222222222223445678899999
Q ss_pred HHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee---cccc---CCeEE-EEecC-
Q psy852 671 KLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP---ASQE---QNDEV-FELQE- 741 (891)
Q Consensus 671 ~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~---s~~~---g~~~l-~sv~~- 741 (891)
++|.++|++. ++.++.+ .+++++.+.+... +.....+.+.|.+.|+..... .... ....+ ++++.
T Consensus 296 ~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~-----~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~ 369 (416)
T PRK13034 296 QALAEVLKER-GYDLVSGGTDNHLLLVDLRPK-----GLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAG 369 (416)
T ss_pred HHHHHHHHHc-CCEeccCCCCCcEEEEEcCCC-----CCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHH
Confidence 9999999887 8888753 4677777776533 224456668888899874321 0000 12345 77665
Q ss_pred ---CCCHHHHHHHHHHHHHHH
Q psy852 742 ---RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 742 ---~tT~edId~li~~L~ei~ 759 (891)
..+++||+++++.|++++
T Consensus 370 t~~~~~~~di~~l~~~l~~~~ 390 (416)
T PRK13034 370 TTRGFGEAEFREIANWILDVL 390 (416)
T ss_pred HhCCCCHHHHHHHHHHHHHHH
Confidence 667999999999999886
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-06 Score=96.84 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=60.5
Q ss_pred EEecCCCChHHHH----HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~k----aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+... .+...|.+++.|+++ |+++|++++++. +-+|.+...+|.+|.+-|+++|+++
T Consensus 107 Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~------tklV~le~p~NPtG~~~di~~I~~l 175 (403)
T PRK07503 107 VIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISDK------TRMVYFETPANPNMRLVDIAAVAEI 175 (403)
T ss_pred EEEccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCcc------CcEEEEeCCCCCCCeeeCHHHHHHH
Confidence 6666666644332 233356788888764 789999988654 3366667789999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.||+
T Consensus 176 a~~~gi~lIvD~a~a 190 (403)
T PRK07503 176 AHGAGAKVVVDNTYC 190 (403)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999883
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.1e-06 Score=95.33 Aligned_cols=273 Identities=12% Similarity=0.138 Sum_probs=180.3
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH---HcC
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAF 527 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~---l~g 527 (891)
.+++.+...+.-+|+ +++|++|++..++.+.......+ .++..|+++..+|+++..++. ..|
T Consensus 50 ~~~~~~~~~~~~~i~--~t~g~teal~~~~~~~~~~~~~~-------------~~~~~vi~~~~e~ps~~~~~~~~~~~G 114 (382)
T TIGR03403 50 KLYKGINARDLDDII--ITSCATESNNWVLKGVYFDEILK-------------GGKNHIITTEVEHPAVRATCAFLESLG 114 (382)
T ss_pred HHHHHcCcCCCCeEE--EeCCHHHHHHHHHHHHHHhhccc-------------CCCCEEEEcCCccHHHHHHHHHHHHCC
Confidence 444455542222666 78899999998877653211100 112369999999999888764 368
Q ss_pred ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC------------CC
Q psy852 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI------------EY 581 (891)
Q Consensus 528 v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi------------~~ 581 (891)
++++.||++++|.+|+++|++++++++. .+ ...+.+..|+.. |++ ++|++ .+
T Consensus 115 ~~v~~v~~~~~g~~d~~~l~~~i~~~t~--lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~ 192 (382)
T TIGR03403 115 VEVTYLPINEQGTITAEQVREAITEKTA--LVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAG 192 (382)
T ss_pred CEEEEEecCCCCCCCHHHHHHhcccCCe--EEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccC
Confidence 8999999999999999999999976431 11 111234566654 333 12321 35
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccc-hHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRS-LKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~a-L~lW~~L~~lG~~G~~ 660 (891)
+|++++++||| ++|.|+|++++|+...+.+.+... .++. . ... ++-.+.+ +.+..+++.+ .+.++
T Consensus 193 ~D~~~~s~~K~-~gp~G~g~l~vr~~~~~~p~~~g~-~~~~-----~--~~~----gt~~~~~~~al~~al~~~-~~~~~ 258 (382)
T TIGR03403 193 VDFLSFSAHKF-HGPKGVGGLYIRKGVELTPLFHGG-EHMG-----G--RRS----GTLNVPYIVAMGEAMRLA-NEYLD 258 (382)
T ss_pred CCEEEEcchhh-CCCCceEEEEECCCCCCCCcccCC-CCCC-----C--ccc----CCcChHHHHHHHHHHHHH-HHhHH
Confidence 89999999998 569999999999875333211100 0000 0 001 1111112 2444455433 34577
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCC--c-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc------
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDV--R-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE------ 731 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~------ 731 (891)
...++..+++++|.+.|+++++++++.+. . .++++|.+.+. ..+.+...|.++|+...+++.+.
T Consensus 259 ~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~~~gI~v~~g~~c~~~~~~~ 331 (382)
T TIGR03403 259 FEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV-------EGEAMLWDLNKAGIAASTGSACASEDLEA 331 (382)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC-------CHHHHHHhhccCCEEEEchhccCCCCCCc
Confidence 77888999999999999999999998653 2 46888988643 35677778888999877654331
Q ss_pred -------------CCeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 732 -------------QNDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 732 -------------g~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
....+ +|+++++|++|||+++++|+++++.
T Consensus 332 ~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~ 375 (382)
T TIGR03403 332 NPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQR 375 (382)
T ss_pred CHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 12457 9999999999999999999988743
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.9e-06 Score=95.51 Aligned_cols=80 Identities=10% Similarity=0.147 Sum_probs=60.3
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+....+ ...|.++..++.+ +.+.+++.+++. +-+|.++..+|.+|.+.||++|+++
T Consensus 103 Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-----~~e~l~~~l~~~------TklV~lespsNPtg~v~dl~~I~~l 171 (394)
T PRK09028 103 LLMVDSCYEPTRDLCDKILKGFGIETTYYDPM-----IGEGIRELIRPN------TKVLFLESPGSITMEVQDVPTLSRI 171 (394)
T ss_pred EEEECCCcHHHHHHHHHhhhhcceEEEEECCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHHH
Confidence 666666776665533 1245677666543 457788877654 3588889999999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.||.+|+
T Consensus 172 a~~~g~~lvvD~t~a 186 (394)
T PRK09028 172 AHEHDIVVMLDNTWA 186 (394)
T ss_pred HHHcCCEEEEECCcc
Confidence 999999888898884
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-06 Score=95.98 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=59.2
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+...-+ ...+.++..++.+ +.++|++.+++. +-+|+++..+|.+|.+.||++|+++
T Consensus 92 Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~-----~~e~l~~~i~~~------tklV~lesp~Np~g~~~dl~~I~~l 160 (377)
T TIGR01324 92 VLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL-----IGEDIATLIQPN------TKVLFLEAPSSITFEIQDIPAIAKA 160 (377)
T ss_pred EEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCcHHHHHHHHHH
Confidence 667776766554433 2245677666542 227788877654 3488888899999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.||.+|+
T Consensus 161 a~~~g~~livD~t~a 175 (377)
T TIGR01324 161 ARNPGIVIMIDNTWA 175 (377)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999888888884
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=97.57 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=60.6
Q ss_pred EEEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+.... +...|.+++.++.+ +.++|++.+++. +-+|++...+|.+|.+.|+++|++
T Consensus 106 ~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-----~~~~l~~~i~~~------tklV~le~p~Np~~~~~di~~I~~ 174 (394)
T PRK07050 106 DVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-----IGAGIADLIQPN------TRLIWLEAPGSVTMEVPDVPAITA 174 (394)
T ss_pred EEEEecCCcccHHHHHHHHHHhcCeEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCccHhhHHHHHH
Confidence 377777787765542 34456788877643 446788777654 347777778889999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++++|+||
T Consensus 175 ia~~~gi~livD~a~ 189 (394)
T PRK07050 175 AARARGVVTAIDNTY 189 (394)
T ss_pred HHHHcCCEEEEECCc
Confidence 999999888888888
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-05 Score=91.90 Aligned_cols=227 Identities=9% Similarity=0.004 Sum_probs=132.4
Q ss_pred EEEecccchHHHHH---HHHH--cCceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEE-EecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEK---AAMM--AFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFV-STTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~K---aa~l--~gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~V-vataGTT~--------c 572 (891)
.|+++..+|.+... ...+ .+.+++.+|.+ +++.+|+++|+++|++.. ...+++ ....|+.. |
T Consensus 113 ~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~---~k~v~~~~~~~~~~~~~~~I~~la 189 (416)
T PRK00011 113 TILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHK---PKLIIAGASAYSRPIDFKRFREIA 189 (416)
T ss_pred EEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcC---CCEEEECCCcCCCccCHHHHHHHH
Confidence 47777777765322 1122 24577888887 458999999999997521 112222 23344332 3
Q ss_pred hhh-----hcC---------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCcccc
Q psy852 573 YRK-----SQG---------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYR 632 (891)
Q Consensus 573 ~~~-----ldG---------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~ 632 (891)
+++ +|+ +..+|.++.++|||+.+|.| |++++.+++...........+..
T Consensus 190 ~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~~~~~~~---------- 258 (416)
T PRK00011 190 DEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSAVFPGIQ---------- 258 (416)
T ss_pred HHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHHhCcccc----------
Confidence 331 222 22478999999999977764 56666544333221111111100
Q ss_pred CCcccccccc-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhH
Q psy852 633 HWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNN 710 (891)
Q Consensus 633 ~~ti~~SRr~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln 710 (891)
.+... ....++.++.....+++.+.+++..++++++.+.|++. ++++.. ....+++.+.+.+. ....
T Consensus 259 -----~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~~-----~~~~ 327 (416)
T PRK00011 259 -----GGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRSK-----GLTG 327 (416)
T ss_pred -----CCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCccc-----CCCH
Confidence 00011 11233444444555678889999999999999999986 687753 23457888887532 1134
Q ss_pred HHHHHHHHhCCcEEEeec-cc-----cCCeEE-EEec----CCCCHHHHHHHHHHHHHHH
Q psy852 711 RKLLEDINASGRLHMVPA-SQ-----EQNDEV-FELQ----ERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 711 ~~L~~~L~~~G~~~~s~s-~~-----~g~~~l-~sv~----~~tT~edId~li~~L~ei~ 759 (891)
..+.+.|.+.|+...... .. .....+ ++.. ...|++|+++++++|+++.
T Consensus 328 ~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~ 387 (416)
T PRK00011 328 KEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVL 387 (416)
T ss_pred HHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHH
Confidence 567888888898743211 01 011224 5432 2468999999999999875
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.8e-06 Score=92.71 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=69.7
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC---CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~---~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~ 218 (891)
|++..-+|......+...+.+++.++.+. ++.+|+++|++.+.+. +.+|+.+..+|.||.+- ++++|+
T Consensus 111 vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~p~NPtG~~~~~~~~~~l~ 184 (382)
T PRK06108 111 VVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPR------TRALFINSPNNPTGWTASRDDLRAIL 184 (382)
T ss_pred EEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCcc------ceEEEEECCCCCCCcccCHHHHHHHH
Confidence 66667788888888877788999999874 3469999999888543 34666677899999765 578899
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++++++++|.+|+++
T Consensus 185 ~~~~~~~~~li~De~y~~~ 203 (382)
T PRK06108 185 AHCRRHGLWIVADEVYERL 203 (382)
T ss_pred HHHHHCCcEEEEehhhhhh
Confidence 9999999999999999654
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.9e-06 Score=95.32 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=63.1
Q ss_pred CCCChHHHHHH-HHcCCeEEEEecCC----------CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc-ccc---cC
Q psy852 149 KEAHSCVEKAA-MMAFVRLKILEPDD----------KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-CSF---DN 213 (891)
Q Consensus 149 ~~~H~Sv~kaa-~~~~~~v~~V~~d~----------~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~-Gav---Dp 213 (891)
...||....++ .+.|...+.+++++ .|.||+++|++.|.+... ..+.+|+++..+|.+ |.+ ++
T Consensus 97 ~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~--~~~~~I~v~~p~N~~gG~~~s~~~ 174 (431)
T cd00617 97 SNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGA--ENIPYIVLTITNNTAGGQPVSMAN 174 (431)
T ss_pred cCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccC--CCccEEEEECCcCCCCCccCCHHH
Confidence 45787766655 56788999998873 356999999999975411 124467777777766 665 46
Q ss_pred HHHHHHHHHHcCCceeeeccc
Q psy852 214 LAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 214 l~~I~~i~~~~~~~lHvDaA~ 234 (891)
+++|.++|+++|++||.|+|.
T Consensus 175 l~~i~eia~~~gi~li~DaAr 195 (431)
T cd00617 175 LREVRELAHKYGIPVVLDAAR 195 (431)
T ss_pred HHHHHHHHHHcCCEEEEEchh
Confidence 778899999999999999995
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=91.56 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=70.3
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~ 218 (891)
.|+++.-+|.....++...|.+++.++.+. .+.+|++.|++.+++.. .+|+++.-+|.+|.+ +++++|+
T Consensus 117 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~NPtG~~~~~~~~~~l~ 190 (393)
T PRK05764 117 EVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKT------KALILNSPSNPTGAVYSPEELEAIA 190 (393)
T ss_pred EEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccc------eEEEEECCCCCCCcccCHHHHHHHH
Confidence 377777888888888777788999999974 45789999999886432 355666778899998 4588999
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|.+|+.
T Consensus 191 ~~a~~~~~~ii~De~y~~ 208 (393)
T PRK05764 191 DVAVEHDIWVLSDEIYEK 208 (393)
T ss_pred HHHHHCCcEEEEeccccc
Confidence 999999999999999954
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=93.85 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=62.2
Q ss_pred EEEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|...... +...+.+++.|+++ |+++|++++++. +-+|+++.-+|.+|.+-|+++|++
T Consensus 105 ~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-----d~e~l~~ai~~~------tklV~l~sp~NPtG~v~di~~I~~ 173 (431)
T PRK08248 105 EIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-----DPENFEAAITDK------TKALFAETIGNPKGDVLDIEAVAA 173 (431)
T ss_pred EEEEccCchhhHHHHHHHHHHhCCEEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHH
Confidence 377777777554332 33457788888763 889999888653 346667778889999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++.+|++++
T Consensus 174 la~~~gi~vIvD~t~a 189 (431)
T PRK08248 174 IAHEHGIPLIVDNTFA 189 (431)
T ss_pred HHHHcCCEEEEeCCCC
Confidence 9999999999999883
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-06 Score=98.94 Aligned_cols=83 Identities=14% Similarity=0.049 Sum_probs=61.0
Q ss_pred EEecCCCChHH------HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCc--cc--cccCH
Q psy852 145 AYCSKEAHSCV------EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--CC--SFDNL 214 (891)
Q Consensus 145 v~~S~~~H~Sv------~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~--~G--avDpl 214 (891)
|++|..+|+++ ...+...|.+++.|+++ +..++++++++|.+.+ .+|..++-+|. +| ..-|+
T Consensus 168 VIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~T------klV~~vh~sN~~i~G~~~~~dl 239 (464)
T PRK04311 168 VIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINENT------ALLLKVHTSNYRIEGFTKEVSL 239 (464)
T ss_pred EEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCccC------eEEEEEcCCCccccccCCcCCH
Confidence 78888877743 22334457788888653 4568999999997654 35666665654 45 56799
Q ss_pred HHHHHHHHHcCCceeeecccc
Q psy852 215 AEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 215 ~~I~~i~~~~~~~lHvDaA~G 235 (891)
++|+++|+++|+++.+|++.|
T Consensus 240 ~eI~~lak~~gi~vivD~gsG 260 (464)
T PRK04311 240 AELAALGKEHGLPVVYDLGSG 260 (464)
T ss_pred HHHHHHHHHcCCeEEEECCCc
Confidence 999999999999999999764
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.4e-06 Score=94.26 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=63.3
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+..+.. ...+.+++.++++ |++++++++++. +.+|.+..-+|.+|.+-|+++|+++
T Consensus 105 VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~------tklV~vesp~NptG~v~dl~~I~~l 173 (427)
T PRK05994 105 FIAARKLYGGSINQFGHAFKSFGWQVRWADAD-----DPASFERAITPR------TKAIFIESIANPGGTVTDIAAIAEV 173 (427)
T ss_pred EEEecCcchhHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHH
Confidence 777777777654432 3356788888764 789999888653 3477778888999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.|++
T Consensus 174 a~~~gi~livD~a~a 188 (427)
T PRK05994 174 AHRAGLPLIVDNTLA 188 (427)
T ss_pred HHHcCCEEEEECCcc
Confidence 999999999999883
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-06 Score=94.56 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=61.8
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+....+ ...+.+++.++. .|++++++++++.+ -+|.+..-+|.+|.+.|+++|+++
T Consensus 91 Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~-----~d~~~l~~ai~~~t------klV~le~P~NPtg~~~dl~~I~~l 159 (377)
T PRK07671 91 VILTDDVYGGTYRVMTKVLNRFGIEHTFVDT-----SNLEEVEEAIRPNT------KAIYVETPTNPLLKITDIKKISTI 159 (377)
T ss_pred EEECCCccchHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCCCC------eEEEEECCCCCCCcccCHHHHHHH
Confidence 677777776454432 224667777764 38999999887643 477778888999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++++|.||+
T Consensus 160 a~~~g~~lvvD~a~~ 174 (377)
T PRK07671 160 AKEKGLLTIVDNTFM 174 (377)
T ss_pred HHHcCCEEEEECCCC
Confidence 999999999999884
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.4e-06 Score=91.30 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=59.6
Q ss_pred EEecCCCChHHHHH--H-HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHH---H
Q psy852 145 AYCSKEAHSCVEKA--A-MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEI---G 218 (891)
Q Consensus 145 v~~S~~~H~Sv~ka--a-~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I---~ 218 (891)
|+++...|.+...+ + ..++.+++.+++++++.+|+++|++++.+....+..+.+|++. |+.+|++-|.++| +
T Consensus 76 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~--np~~G~v~~~~~l~~i~ 153 (333)
T PRK10534 76 YIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLE--NTHNGKVLPREYLKQAW 153 (333)
T ss_pred eEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEe--cCCCCeecCHHHHHHHH
Confidence 56666677544432 2 3344677888888889999999999886532111123344443 5567999888766 5
Q ss_pred HHHHHcCCceeeeccc
Q psy852 219 PVAKEFDVWLHVDGAY 234 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~ 234 (891)
++|+++++++++|.|+
T Consensus 154 ~~~~~~~~~lvvDEA~ 169 (333)
T PRK10534 154 EFTRERNLALHVDGAR 169 (333)
T ss_pred HHHHHcCCeEEeeHHH
Confidence 6788889999999987
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.7e-06 Score=94.64 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=60.9
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+....+ ...+.+++.++. .|++++++++++. +-+|.+...+|.+|.+.|+++|+++
T Consensus 91 Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~-----~d~e~l~~ai~~~------t~lV~lesP~Nptg~~~di~~I~~l 159 (380)
T PRK06176 91 VLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT-----SDLSQIKKAIKPN------TKALYLETPSNPLLKITDLAQCASV 159 (380)
T ss_pred EEEcCCChhHHHHHHHHHHHhcCeEEEEcCC-----CCHHHHHHhcCcC------ceEEEEECCCCCCceecCHHHHHHH
Confidence 666666665554333 234667777764 3899999888654 3477777789999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.||+
T Consensus 160 a~~~gi~vivD~t~a 174 (380)
T PRK06176 160 AKDHGLLTIVDNTFA 174 (380)
T ss_pred HHHcCCEEEEECCcc
Confidence 999999999999883
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.3e-06 Score=93.50 Aligned_cols=177 Identities=14% Similarity=0.125 Sum_probs=120.4
Q ss_pred EEEecCCCChHHHHHH-H---HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa-~---~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+....+ . .++.++..++ ..|++++++.+++. +-+|.++..+|.+|.+-|+++|.+
T Consensus 93 ~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~e~l~~~l~~~------tklV~l~sP~NPtG~v~di~~I~~ 161 (386)
T PRK08045 93 LLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICH 161 (386)
T ss_pred EEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCHHHHHHhcccC------CeEEEEECCCCCCCEecCHHHHHH
Confidence 4777777777654433 2 2444666653 36899999888654 347777899999999999999999
Q ss_pred HHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchh
Q psy852 220 VAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEG 299 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (891)
+|+++|+++.+|.||+.....
T Consensus 162 ia~~~g~~vivDeay~~~~~~----------------------------------------------------------- 182 (386)
T PRK08045 162 LAREAGAVSVVDNTFLSPALQ----------------------------------------------------------- 182 (386)
T ss_pred HHHHcCCEEEEECCCCccccC-----------------------------------------------------------
Confidence 999999988899988321100
Q ss_pred hHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--
Q psy852 300 VLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD-- 377 (891)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~-- 377 (891)
. ++ + ..+|-+..+.|||+.+|-+
T Consensus 183 ------------------------------------------------~----pl-~--~gaDivv~S~tK~l~G~~d~~ 207 (386)
T PRK08045 183 ------------------------------------------------N----PL-A--LGADLVLHSCTKYLNGHSDVV 207 (386)
T ss_pred ------------------------------------------------C----ch-h--hCCCEEEeecceeccCCCCce
Confidence 0 00 0 1368889999999988876
Q ss_pred ceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhc
Q psy852 378 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 457 (891)
Q Consensus 378 ~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~ 457 (891)
.|+++.+++. +...+.....++ +. ...++..|+.++.+. -+...+++..++|..+++.|+
T Consensus 208 ~G~vi~~~~~-~~~~l~~~~~~~-------------g~----~~~p~~~~l~~rgl~--tl~~R~~~~~~na~~la~~L~ 267 (386)
T PRK08045 208 AGVVIAKDPD-VVTELAWWANNI-------------GV----TGGAFDSYLLLRGLR--TLVPRMELAQRNAQAIVKYLQ 267 (386)
T ss_pred eEEEEeCcHH-HHHHHHHHHHhc-------------CC----CCCHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHH
Confidence 6777665543 211111100111 11 134566787777665 488999999999999999999
Q ss_pred cCCccccc
Q psy852 458 RDPRFEIS 465 (891)
Q Consensus 458 ~~~~~eVv 465 (891)
++|.++-+
T Consensus 268 ~~p~v~~V 275 (386)
T PRK08045 268 TQPLVKKL 275 (386)
T ss_pred cCCCEeEE
Confidence 99987644
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.5e-05 Score=86.03 Aligned_cols=216 Identities=13% Similarity=0.064 Sum_probs=124.0
Q ss_pred eEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhc--CCccEEE---EecCCccc--------hh
Q psy852 507 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM--GYIPFFV---STTLGTTS--------CY 573 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~--g~ip~~V---vataGTT~--------c~ 573 (891)
-.|+++..+|.|+..++.+........ +..|+++|+++|++.... ..+.+++ .+..|+.. |+
T Consensus 96 d~ii~d~~~H~sv~~~~~~~~~~~~~~-----~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~ 170 (370)
T PRK05937 96 DYVLWDEQVHISVVYSLSVISGWHQSF-----RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSK 170 (370)
T ss_pred CEEEEEhhhhHHHHHHHHHcCCceEEe-----cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHH
Confidence 368888999999999987653322223 346899999999864321 1222222 23345544 44
Q ss_pred h-----hhcCC-------------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 574 R-----KSQGI-------------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 574 ~-----~ldGi-------------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
+ ++|++ +..+-+..+++|+++ |.|+|+++.++. ..........|....
T Consensus 171 ~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g-~~G~~vl~~~~~--~~~~~~~~~~~~~s~----- 242 (370)
T PRK05937 171 KYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALG-SMGAALLSSSEV--KQDLMLNSPPLRYST----- 242 (370)
T ss_pred HcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhh-cCceEEEcCHHH--HHHHHHhCCCCeecC-----
Confidence 3 12221 112234566779775 788887655331 111110111222110
Q ss_pred cccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhh
Q psy852 630 DYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQN 709 (891)
Q Consensus 630 ~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~l 709 (891)
+. -+...+.+..+++.+-..+ ....++..+++++|.+.|.... + ..++.|.+.+. .
T Consensus 243 -----~~---~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~-------~-~~~~~i~~~~~-------~ 298 (370)
T PRK05937 243 -----GL---PPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSAA-------P-GCVQPIFLPGI-------S 298 (370)
T ss_pred -----CC---CHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCCC-------C-CCEEEEEeCCh-------h
Confidence 10 1122334445666665555 4456778888999988886421 0 11233555432 3
Q ss_pred HHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 710 NRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++.+.+.|.+.|+.....+ ......+ |+++.++|++|||+++++|+++..
T Consensus 299 ~~~~~~~L~~~gi~v~~~~-~~~~~~iRis~~~~~t~edid~l~~~L~~~~~ 349 (370)
T PRK05937 299 EQELYSKLVETGIRVGVVC-FPTGPFLRVNLHAFNTEDEVDILVSVLATYLE 349 (370)
T ss_pred HHHHHHHHHHCCeeEEeeC-CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888988998643322 2234467 999999999999999999998764
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.4e-05 Score=87.60 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=67.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++...|.+...++.+.+.++..++ .+|++++++.+.+... ..+.+|+.....+.+|.+.|+++|.++|++
T Consensus 119 ~vi~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~ 191 (385)
T TIGR01825 119 IVLSDELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENPS--YGKKLIVTDGVFSMDGDVAPLPEIVELAER 191 (385)
T ss_pred EEEEEccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhcc--CCCeEEEEecCCcCCCCccCHHHHHHHHHH
Confidence 477778899999888777666665553 5889999988875421 224566667677889999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
||+++++|.+|+
T Consensus 192 ~~~~li~De~~~ 203 (385)
T TIGR01825 192 YGAVTYVDDAHG 203 (385)
T ss_pred hCCEEEEECccc
Confidence 999999999994
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-05 Score=89.80 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=59.6
Q ss_pred EEecCCCChHHH----HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~----kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+.. ..+...|.+++.++. .|+++|++++++. +-+|.+..-+|.+|.+.++++|+++
T Consensus 93 Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~-----~d~~~l~~~i~~~------tklv~le~P~NP~~~~~dl~~I~~l 161 (366)
T PRK08247 93 LIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT-----ASLKAIEQAITPN------TKAIFIETPTNPLMQETDIAAIAKI 161 (366)
T ss_pred EEEecCCcCcHHHHHHHHhhccCceEEEECC-----CCHHHHHHhcccC------ceEEEEECCCCCCCcHHHHHHHHHH
Confidence 555555554432 223345678888775 3899999988654 3477777777889999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.+|+
T Consensus 162 a~~~g~~lIvD~t~~ 176 (366)
T PRK08247 162 AKKHGLLLIVDNTFY 176 (366)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999888888883
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.9e-07 Score=100.33 Aligned_cols=208 Identities=15% Similarity=0.097 Sum_probs=126.4
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH--
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-- 523 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-- 523 (891)
.++.+.+++.+.. +. .+ +..+||.+|.+++.+.-. +.-.|++...+|..+....
T Consensus 32 ~~l~~~i~~l~g~-e~--a~--f~~sGT~An~~al~~~~~-------------------~~~~vi~~~~aHi~~~E~ga~ 87 (290)
T PF01212_consen 32 ARLEERIAELFGK-EA--AL--FVPSGTMANQLALRAHLR-------------------PGESVICADTAHIHFDETGAI 87 (290)
T ss_dssp HHHHHHHHHHHTS-SE--EE--EESSHHHHHHHHHHHHHH-------------------TTEEEEEETTEHHHHSSTTHH
T ss_pred HHHHHHHHHHcCC-CE--EE--EeCCCChHHHHHHHHHHh-------------------cCCceeccccceeeeeccchh
Confidence 3444566666655 22 12 566899999999877542 1234899999999886643
Q ss_pred -HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----C--Cccc-----------hhh-----hhcCC-
Q psy852 524 -MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----L--GTTS-----------CYR-----KSQGI- 579 (891)
Q Consensus 524 -~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----a--GTT~-----------c~~-----~ldGi- 579 (891)
.+.|.+++.||.+++|.||+++|++.+++.......|-+|+.+ . |+.. |++ |+||.
T Consensus 88 ~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGAR 167 (290)
T PF01212_consen 88 EELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGAR 167 (290)
T ss_dssp HHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETT
T ss_pred hHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhh
Confidence 3678999999998889999999999998854322335555432 2 4433 444 57763
Q ss_pred ----------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccccc
Q psy852 580 ----------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR 643 (891)
Q Consensus 580 ----------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~ 643 (891)
.++|++++++.|.+++|. |.+++-+++.+...... ..++.. ++.-+ ++-
T Consensus 168 l~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~-~k~~gg-----------~~~~~-G~~ 232 (290)
T PF01212_consen 168 LANAAAALGVSLAEIAAGADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQ-RKRLGG-----------GMRQA-GVL 232 (290)
T ss_dssp HHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHH-HHHHTH-----------HHHHT-THH
T ss_pred HHHhhhcccccHHHHhhhCCEEEEEEEccccccc--ceEEEechHHHHHHHHH-HHHhcc-----------Ceeec-cee
Confidence 779999999999999998 66777666544432211 000000 00000 000
Q ss_pred -chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeE
Q psy852 644 -SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGL 693 (891)
Q Consensus 644 -aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~i 693 (891)
+..++......+.+.....+++..++|++|.+.|+..+. .+..++..|.
T Consensus 233 ~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~~-~~~~~~~tn~ 282 (290)
T PF01212_consen 233 AAAELYQFAALRALELWLERARHANAMAKRLAAGLEALGG-VLPRPVETNQ 282 (290)
T ss_dssp HHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEECE-EEETTSS-HH
T ss_pred eeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCC-cccCCCCCcE
Confidence 001111122233344467788899999999999988654 3555555543
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-05 Score=88.88 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=67.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|+++.-++......+...+.+++.++++++|.+|++.|++.+.+. +.+|+++..+|.+|.+-|++++.++|+.+
T Consensus 98 v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~l~~~~ 171 (346)
T TIGR01141 98 VLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDK------PKLVFLCSPNNPTGNLLSRSDIEAVLERT 171 (346)
T ss_pred EEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 666555554444455667889999999999999999999976433 34677778899999999999999999987
Q ss_pred --CCceeeecccc
Q psy852 225 --DVWLHVDGAYA 235 (891)
Q Consensus 225 --~~~lHvDaA~G 235 (891)
++++.+|.+|+
T Consensus 172 ~~~~~ii~D~~y~ 184 (346)
T TIGR01141 172 PEDALVVVDEAYG 184 (346)
T ss_pred CCCcEEEEECchh
Confidence 88899999984
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-05 Score=88.91 Aligned_cols=249 Identities=12% Similarity=0.075 Sum_probs=145.7
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCc
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV 528 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv 528 (891)
-+.+++.++..+. +|+ +++|+++++..++.+.. . +.-.|+++.-.+......+...|.
T Consensus 60 r~~ia~~~~~~~~-~i~--~~~G~~~~l~~~~~~l~----~---------------~gd~v~~~~p~y~~~~~~~~~~g~ 117 (346)
T TIGR01141 60 KQALADYYGVDPE-QIL--LGNGSDEIIELLIRAFL----E---------------PGDAVLVPPPTYSMYEISAKIHGA 117 (346)
T ss_pred HHHHHHHhCcChH-HEE--EcCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCCHHHHHHHHHHcCC
Confidence 3444445543233 566 67888888766654421 0 112366666666655666677899
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-------hcCC--------C--
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-------SQGI--------E-- 580 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-------ldGi--------~-- 580 (891)
+++.+|.++++.+|++.|++++.+.+ ..++++ +..|++. |..+ +|.+ .
T Consensus 118 ~~~~~~~~~~~~~d~~~l~~~~~~~~----~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~ 193 (346)
T TIGR01141 118 EVVKVPLDEDGQLDLEDILVAIDDKP----KLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTL 193 (346)
T ss_pred eEEEeccCCCCCCCHHHHHHhcCCCC----CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHH
Confidence 99999999889999999999875432 122322 3345544 2110 1111 0
Q ss_pred -----Ccc-EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHH
Q psy852 581 -----YAD-SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT 653 (891)
Q Consensus 581 -----~aD-SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~ 653 (891)
..+ -+..+.+||++.| ..+|+++.++. +.+.+..... .++. + .+.+..+...
T Consensus 194 ~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~--~~~~~~~~~~-------------~~~~--~----~~~~~~~~~~ 252 (346)
T TIGR01141 194 PLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAE--IIDALNKVRA-------------PFNL--S----RLAQAAAIAA 252 (346)
T ss_pred HHHhhCCCEEEEehhhHhhhchhhhceeeecCHH--HHHHHHhccC-------------CCCC--C----HHHHHHHHHH
Confidence 012 3355789999655 45898887432 2222211000 0110 1 1122222222
Q ss_pred HHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccC
Q psy852 654 YGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQ 732 (891)
Q Consensus 654 lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g 732 (891)
+-.. .+.+..++..++++++.+.|++.+++++. ++..+.++|.+.. ..+++.+.|.+.|+....+....+
T Consensus 253 l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~--------~~~~~~~~L~~~gI~v~~g~~f~~ 323 (346)
T TIGR01141 253 LRDDDFIEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR--------DADALFEALLEKGIIVRDLNSYPG 323 (346)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC--------CHHHHHHHHHHCCeEEEeCCCcCC
Confidence 2211 36667777888899999999988888864 4456678887742 346788889899977554432211
Q ss_pred -CeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 733 -NDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 733 -~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
...+ ++++ +++|+++++++|+
T Consensus 324 ~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 324 LPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred CCCeEEEecC---CHHHHHHHHHHhC
Confidence 3456 8765 7899999998763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.3e-05 Score=87.03 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=64.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhh--------cCCcceEEEeecccCccccccCHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDET--------MGYIPFFVSTTLGTTSCCSFDNLA 215 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~--------~g~~p~~V~~t~Gtt~~GavDpl~ 215 (891)
.|++.+..|.|+..++.+.+.++++++.+ |.+++++.++.... ....+.+|++-...+.+|.+-|++
T Consensus 84 ~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~ 158 (392)
T PLN03227 84 LLVVDRGVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLK 158 (392)
T ss_pred EEEEeccccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHH
Confidence 58899999999988887766677766643 24445544332211 112345666666778899999999
Q ss_pred HHHHHHHHcCCceeeecccc
Q psy852 216 EIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 216 ~I~~i~~~~~~~lHvDaA~G 235 (891)
+|.++|+++|+++++|-+++
T Consensus 159 ~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 159 ELVALKEEFHYRLILDESFS 178 (392)
T ss_pred HHHHHHHHcCCEEEEECccc
Confidence 99999999999999999995
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.9e-05 Score=84.75 Aligned_cols=216 Identities=11% Similarity=0.104 Sum_probs=130.7
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC----Cccc--------hhhh
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL----GTTS--------CYRK 575 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata----GTT~--------c~~~ 575 (891)
.|+++...|.+...++.+.+.+++.+|. .|+++|++.+++... ...++++.+. |+.. |+++
T Consensus 125 ~V~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~~~--~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~ 197 (385)
T PRK05958 125 LIVSDKLNHASLIDGARLSRARVRRYPH-----NDVDALEALLAKWRA--GRALIVTESVFSMDGDLAPLAELVALARRH 197 (385)
T ss_pred EEEEeCccCHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhccC--CCeEEEEEecccCCCCcCCHHHHHHHHHHh
Confidence 5778889999999998888888888876 389999999975311 1223333322 3222 4331
Q ss_pred -----hc-----C--------------CC-Ccc-EEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCC
Q psy852 576 -----SQ-----G--------------IE-YAD-SFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGA 628 (891)
Q Consensus 576 -----ld-----G--------------i~-~aD-SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~ 628 (891)
+| | +. ..| -+..+.||+++. .| |+++. ++... +.+. ....|..
T Consensus 198 ~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G-g~~~~-~~~~~-~~~~~~~~~~~~------ 267 (385)
T PRK05958 198 GAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGS-SG-AAVLG-SETLI-DYLINRARPFIF------ 267 (385)
T ss_pred CCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhccc-CC-cEEEc-CHHHH-HHHHHhCcccee------
Confidence 11 1 11 123 346788999974 33 55544 33222 2211 1111110
Q ss_pred ccccCCccccc-ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhh
Q psy852 629 IDYRHWGIPLS-RRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIAD 707 (891)
Q Consensus 629 ~~~~~~ti~~S-Rr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d 707 (891)
..+ -.......+.+++.+... .+..++..++++++.+.|++. ++++. ++..++++|.++. .
T Consensus 268 --------~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~------~ 329 (385)
T PRK05958 268 --------TTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRAL-GFQLM-DSQSAIQPLIVGD------N 329 (385)
T ss_pred --------cCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC------H
Confidence 011 112233444555544322 566778888999999999875 46654 4566788888742 2
Q ss_pred hhHHHHHHHHHhCCcEEEeec--c-ccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 708 QNNRKLLEDINASGRLHMVPA--S-QEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 708 ~ln~~L~~~L~~~G~~~~s~s--~-~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
....++.+.|.+.|+.+.... . ..+..++ ++++.+++++|++++++.|+++
T Consensus 330 ~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 330 ERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred HHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 345678899988998854311 1 1234567 9999889999999999998764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.9e-05 Score=89.02 Aligned_cols=87 Identities=8% Similarity=0.132 Sum_probs=67.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhc----CCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM----GYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~----g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
+|++....|+|+..++.+.+.++++++.+ |.++|+..+++..+. .....+|++..-.+.+|.+-|+++|++
T Consensus 195 ~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~ 269 (481)
T PLN02822 195 IIVADEGVHWGIQNGLYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVR 269 (481)
T ss_pred EEEEeCCccHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHH
Confidence 46677889999999988888888888765 456677666543221 122256666666777999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|++||+++.+|-+++
T Consensus 270 l~~k~~~~LIvDEa~s 285 (481)
T PLN02822 270 LKEKYRFRVLLDESNS 285 (481)
T ss_pred HHHHcCCEEEEECCcc
Confidence 9999999999999995
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00012 Score=83.32 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=130.8
Q ss_pred eEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc--------hh
Q psy852 507 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS--------CY 573 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~--------c~ 573 (891)
..|++.+..|++...++.+.+.+++.++. +|+++|++.+++....+..+.+|+. ..|+.. |.
T Consensus 127 d~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~ 201 (397)
T PRK06939 127 DAIISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLAD 201 (397)
T ss_pred CEEEEEhhhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHH
Confidence 35888899999999988888887777765 5899999998763222212233332 123322 43
Q ss_pred hh--------------h--c--------CC-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCC
Q psy852 574 RK--------------S--Q--------GI-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEG 627 (891)
Q Consensus 574 ~~--------------l--d--------Gi-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~ 627 (891)
++ + . ++ +.+|.+..++||+++++ ..|+++.+.+ .+ +.+.. ...|..
T Consensus 202 ~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~-r~G~v~~~~~-~~-~~l~~~~~~~~~----- 273 (397)
T PRK06939 202 KYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGA-SGGYTAGRKE-VI-DWLRQRSRPYLF----- 273 (397)
T ss_pred HhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCcc-CceEEEeCHH-HH-HHHHHhCccccc-----
Confidence 31 0 0 11 23578888999999655 4577766533 22 22221 111110
Q ss_pred CccccCCcccccc-cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhh
Q psy852 628 AIDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIA 706 (891)
Q Consensus 628 ~~~~~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~ 706 (891)
.++- ......+..+++.+. ...+..++..++++++.+.|++. ++++.. +..+++.+.+.+
T Consensus 274 ---------~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~~~~~~~------ 334 (397)
T PRK06939 274 ---------SNSLAPAIVAASIKVLELLE--ESDELRDRLWENARYFREGMTAA-GFTLGP-GEHPIIPVMLGD------ 334 (397)
T ss_pred ---------cCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCcCC-CCCCEEEEEECC------
Confidence 0011 111222333444432 12456677788899999999875 455543 344555444432
Q ss_pred hhhHHHHHHHHHhCCcEEEeeccc----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 707 DQNNRKLLEDINASGRLHMVPASQ----EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 707 d~ln~~L~~~L~~~G~~~~s~s~~----~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.....++.+.|.++|+... +... .+...+ ++++...+++||+++++.|++++.
T Consensus 335 ~~~~~~~~~~L~~~gI~v~-~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~ 392 (397)
T PRK06939 335 AKLAQEFADRLLEEGVYVI-GFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGK 392 (397)
T ss_pred HHHHHHHHHHHHHCCceEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 1245678899988898755 3221 223456 888888899999999999987763
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.8e-05 Score=88.37 Aligned_cols=290 Identities=11% Similarity=0.044 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccccccCCC-CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecc
Q psy852 435 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSK 513 (891)
Q Consensus 435 ~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~it-sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~ 513 (891)
-+.+.++-.-+++.|+.+. ..... +....++ .+|+.||+.++++. .+ +.-.|+..+
T Consensus 189 ~~~iD~iE~la~era~~lF---~~~~~-~~gaNVQp~SGs~AN~aV~~AL----l~---------------PGD~IL~ld 245 (586)
T PLN02271 189 NQYIDQIERLCCERALAAF---GLDSE-KWGVNVQPYSCTSANFAVYTGL----LL---------------PGDRIMGLD 245 (586)
T ss_pred ChhHHHHHHHHHHHHHHHh---CCccc-ccccceeeccHHHHHHHHHHHh----cC---------------CCCEEEEec
Confidence 4445555566666666554 21110 1101122 27789999888764 11 112233322
Q ss_pred ---cchHHHH------HHHHHcCceEEEec--CC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc----------
Q psy852 514 ---EAHSCVE------KAAMMAFVRLKILE--PD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS---------- 571 (891)
Q Consensus 514 ---~aH~Sv~------Kaa~l~gv~v~~Vp--~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~---------- 571 (891)
-.|.+.. +-+...++.+..+| +| ++|.+|.++|++..... .|-+|+...-...
T Consensus 246 l~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~-----rPKLII~g~Saypr~~D~~~i~e 320 (586)
T PLN02271 246 SPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDF-----RPKILICGGSSYPREWDYARFRQ 320 (586)
T ss_pred CCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhc-----CCeEEEECchhccCcCCHHHHHH
Confidence 3455543 12233455455555 64 67999999999855332 2444544222211
Q ss_pred -hhh----------hhcC----------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccC-----C
Q psy852 572 -CYR----------KSQG----------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHG-----H 625 (891)
Q Consensus 572 -c~~----------~ldG----------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~-----~ 625 (891)
|.+ |..| +.++|.++.+.||||.+|.| |+++++++.. +............ .
T Consensus 321 IAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~--~~~~g~~gs~s~~~~~~d~ 397 (586)
T PLN02271 321 IADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPK--LRKQGMLLSHGDDNSHYDF 397 (586)
T ss_pred HHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEeccccc--ccccCCccccccccccHHH
Confidence 322 2222 46799999999999999999 8888876522 1111000000000 0
Q ss_pred CCCccccC-Ccccccccc-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCc
Q psy852 626 EGAIDYRH-WGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSEN 702 (891)
Q Consensus 626 e~~~~~~~-~ti~~SRr~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~ 702 (891)
+...+..- .+++++-.. ...++..+++......+++..++.+++|+.|++.|.+. +|.+++. .+.++|...+.+.+
T Consensus 398 ~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~g 476 (586)
T PLN02271 398 EEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGTDNHLLLWDLTTLG 476 (586)
T ss_pred HHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCcccC
Confidence 00001111 133433322 23455667777777788999999999999999999884 8888753 45677777775542
Q ss_pred chhhhhhHHHHHHHHHhCCcEEEeecc------ccCCeEEEE----ecCCCCHHHHHHHHHHHHHHHHH
Q psy852 703 NLIADQNNRKLLEDINASGRLHMVPAS------QEQNDEVFE----LQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 703 ~~~~d~ln~~L~~~L~~~G~~~~s~s~------~~g~~~l~s----v~~~tT~edId~li~~L~ei~~~ 761 (891)
-.....-..|.+.|+..---+. ....++.+. +.....++|++++.+.|.+++++
T Consensus 477 -----~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~~ 540 (586)
T PLN02271 477 -----LTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQI 540 (586)
T ss_pred -----CCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 1234455556667765211110 011112232 44567889999999999988763
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8e-05 Score=85.15 Aligned_cols=281 Identities=12% Similarity=0.040 Sum_probs=159.5
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++-+.+++.+... . ++ .++|||+++..++.+.. . .+.-.|+++..+|.+...++..
T Consensus 36 ~~le~~la~~~g~~-~--~v--~~~sgt~al~lal~al~---~---------------~~Gd~Viv~~~~~~~~~~~~~~ 92 (379)
T PRK11658 36 QALEQAFCQLTGNQ-H--AI--AVSSATAGMHITLMALG---I---------------GPGDEVITPSLTWVSTLNMIVL 92 (379)
T ss_pred HHHHHHHHHHhCCC-e--EE--EECCHHHHHHHHHHHcC---C---------------CCCCEEEECCCcHHHHHHHHHH
Confidence 33444555555442 2 23 35788999888876531 0 0122588889999999888888
Q ss_pred cCceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcC-------------
Q psy852 526 AFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQG------------- 578 (891)
Q Consensus 526 ~gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldG------------- 578 (891)
.|++++.+++|.+ +.+|+++|+++|.+.++ .++++...|... |+++ .|+
T Consensus 93 ~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tk----av~~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~ 168 (379)
T PRK11658 93 LGATPVMVDVDRDTLMVTPEAIEAAITPRTK----AIIPVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHI 168 (379)
T ss_pred cCCEEEEEecCCCcCCcCHHHHHHhcccCCe----EEEEeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeec
Confidence 8999999999865 46999999999976422 233455567664 4331 111
Q ss_pred -CCCccEEEEcCcccCCcccccEEEEEeCCccchhh--hccCCCccccC----CCCCccccCCcccccccccchHHHHHH
Q psy852 579 -IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA--LVVDPLYLQHG----HEGAIDYRHWGIPLSRRFRSLKLWFVI 651 (891)
Q Consensus 579 -i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~--l~~~~~Yl~~~----~e~~~~~~~~ti~~SRr~~aL~lW~~L 651 (891)
-..++.++++++|.+.++- -|+++..+++...+. +...-.+.... ....+.+..+.+ +-.++--.+=+++
T Consensus 169 g~~g~~~~Sf~~~K~l~~g~-GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~--G~n~~~~~l~AAl 245 (379)
T PRK11658 169 GARGTAIFSFHAIKNITCAE-GGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTP--GYKYNLADINAAI 245 (379)
T ss_pred CCCCCEEEeCCCCCcCcccC-ceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeecc--ccccCcCHHHHHH
Confidence 1234778999999886542 344444444433221 11111111000 000000000001 1011112233455
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-----eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE-
Q psy852 652 RTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-----LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHM- 725 (891)
Q Consensus 652 ~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~- 725 (891)
...-.+++.+..++..++++++.+.|++++...+..+.. ..+.+|++.+.. .+....++.+.|.+.|+...
T Consensus 246 ~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~L~~~gI~~~~ 322 (379)
T PRK11658 246 ALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEER---CGISRDALMEALKERGIGTGL 322 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCcc---ccCCHHHHHHHHHHCCCCCcc
Confidence 556678899999999999999999999876432322211 245667764210 01235678888888886411
Q ss_pred --eecc----cc--------------CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 726 --VPAS----QE--------------QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 726 --s~s~----~~--------------g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+.. .. ....+ +-+++..|++|+++++++|+++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 323 HFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred cCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 0100 00 01123 44677899999999999999864
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.3e-06 Score=95.01 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCChHHHHHH-HHcCCeEEEEec----------CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCc-cc---cccCH
Q psy852 150 EAHSCVEKAA-MMAFVRLKILEP----------DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-CC---SFDNL 214 (891)
Q Consensus 150 ~~H~Sv~kaa-~~~~~~v~~V~~----------d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~-~G---avDpl 214 (891)
..||-.-++. .+.|...+.+++ +.+|.||++.|++.|++.-. +.++ ++..+..+|. -| ..+++
T Consensus 129 n~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~-~~i~-~v~~tlt~N~~GGqpvslenl 206 (467)
T TIGR02617 129 NYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGP-NNVP-YIVATITCNSAGGQPVSLANL 206 (467)
T ss_pred EEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCC-CCce-eeeeeEEEecCCCEEeCHHHH
Confidence 3444433333 566766665532 24699999999999986411 1223 3333333333 34 34778
Q ss_pred HHHHHHHHHcCCceeeeccc
Q psy852 215 AEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 215 ~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+|.++|++||+.+|+|||-
T Consensus 207 r~V~~la~~~GIplhLDgAR 226 (467)
T TIGR02617 207 KAVYEIAKKYDIPVVMDSAR 226 (467)
T ss_pred HHHHHHHHHcCCcEEEEhHH
Confidence 88999999999999999988
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=85.89 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=96.9
Q ss_pred HHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHH
Q psy852 36 DMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ 115 (891)
Q Consensus 36 ~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~ 115 (891)
.-+..++|.|+.. ..||.+..|=.++++-+-..|.=..+... .+.+.|+
T Consensus 30 ~~V~~A~~~~~lg-h~sPe~~qIm~~v~egikyVFkT~n~~tf----------------------------~isgsGh-- 78 (385)
T KOG2862|consen 30 GRVQEAMSRPSLG-HMSPEFVQIMDEVLEGIKYVFKTANAQTF----------------------------VISGSGH-- 78 (385)
T ss_pred HHHHHhhcCCccc-cCCHHHHHHHHHHHHHHHHHhccCCCceE----------------------------EEecCCc--
Confidence 4444555555544 37899999999999999998865443210 0112232
Q ss_pred HHHHHHHHHHhccccCCccccccccCC-eEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCC
Q psy852 116 SVQNIIVLTRGQKKIHPFVDEGVLLSK-LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGY 194 (891)
Q Consensus 116 ~~~~~~~~ar~~~~~~~~~~~g~~~~~-~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~ 194 (891)
+ ...+.+.+.- .|. .+ +++.+..-.|-...-+ +--|.+|..|+.|.-....++.+++.+.+.+
T Consensus 79 ~-g~E~al~N~l---ePg-------d~vLv~~~G~wg~ra~D~~-~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~---- 142 (385)
T KOG2862|consen 79 S-GWEAALVNLL---EPG-------DNVLVVSTGTWGQRAADCA-RRYGAEVDVVEADIGQAVPLEEITEKLSQHK---- 142 (385)
T ss_pred c-hHHHHHHhhc---CCC-------CeEEEEEechHHHHHHHHH-HhhCceeeEEecCcccCccHHHHHHHHHhcC----
Confidence 1 1122221111 111 11 1222222333322222 2245689999888888899999999998854
Q ss_pred cceEEEeecccCccccccC-HHHHHHHHHHcCCceeeecc
Q psy852 195 IPFFVSTTLGTTSCCSFDN-LAEIGPVAKEFDVWLHVDGA 233 (891)
Q Consensus 195 ~p~~V~~t~Gtt~~GavDp-l~~I~~i~~~~~~~lHvDaA 233 (891)
|.+|.+|.|.|.||..+| ++.+.++|++|+..+.||+.
T Consensus 143 -p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~V 181 (385)
T KOG2862|consen 143 -PKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTV 181 (385)
T ss_pred -CceEEEEecCccccccchHHHHHHHHhhcCCeEEEEech
Confidence 889999999999999999 77778999999999999984
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=91.48 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=119.3
Q ss_pred EEEecCCCChHHHHHH-H---HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa-~---~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...+.+....+ . .++.++..++. .|+++|++++++. +-+|.++..+|.+|.+-|+++|++
T Consensus 92 ~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~-----~d~~~l~~ai~~~------tklV~l~~p~NPtG~~~dl~~I~~ 160 (382)
T TIGR02080 92 LLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ-----GDEQALRAALAQK------PKLVLIETPSNPLLRVVDIAKICH 160 (382)
T ss_pred EEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcCcC------ceEEEEECCCCCCCEecCHHHHHH
Confidence 3777777776654433 2 23445555532 3789999988654 347778889999999999999999
Q ss_pred HHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchh
Q psy852 220 VAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEG 299 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (891)
+|+++|+++.+|.||.-+...
T Consensus 161 la~~~g~~vvvD~a~~~~~~~----------------------------------------------------------- 181 (382)
T TIGR02080 161 LAKAVGAVVVVDNTFLSPALQ----------------------------------------------------------- 181 (382)
T ss_pred HHHHcCCEEEEECCCcccccC-----------------------------------------------------------
Confidence 999999999999988211100
Q ss_pred hHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--
Q psy852 300 VLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD-- 377 (891)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~-- 377 (891)
. ++ + ..+|-+..+++||+.++-+
T Consensus 182 ------------------------------------------------~----pl-~--~gaDivv~S~sK~l~G~~~~~ 206 (382)
T TIGR02080 182 ------------------------------------------------N----PL-A--LGADLVLHSCTKYLNGHSDVI 206 (382)
T ss_pred ------------------------------------------------C----ch-h--hCCCEEEeecceeccCCCCce
Confidence 0 00 0 0358888999999988765
Q ss_pred ceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhc
Q psy852 378 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 457 (891)
Q Consensus 378 ~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~ 457 (891)
.|+++.++...... +.....|+ +-...++..|..++ |.+-+..++++..++|..+++.|+
T Consensus 207 ~G~i~~~~~~~~~~-l~~~~~~~-----------------g~~~sp~~a~l~lr--~l~tl~~R~~~~~~na~~~a~~L~ 266 (382)
T TIGR02080 207 AGAVIAKDPQVAEE-LAWWANNL-----------------GVTGGAFDSYLTLR--GLRTLVARMRLQQRNAQAIVEYLQ 266 (382)
T ss_pred eEEEEeCCHHHHHH-HHHHHHcc-----------------CCCCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHH
Confidence 67777766532221 11111111 11134667788866 556677778888899999999999
Q ss_pred cCCcccccc
Q psy852 458 RDPRFEISN 466 (891)
Q Consensus 458 ~~~~~eVv~ 466 (891)
++|.++-+.
T Consensus 267 ~~p~v~~V~ 275 (382)
T TIGR02080 267 TQPLVKKIY 275 (382)
T ss_pred hCCCeeEEE
Confidence 999876443
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-05 Score=90.12 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=61.3
Q ss_pred EEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+.... +...+.+++.++.+ |++++++.+++. +-+|++...+|.+|.+-|+++|+++
T Consensus 106 Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~e~l~~~i~~~------tklI~iesP~NPtG~v~dl~~I~~l 174 (400)
T PRK06234 106 VVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NLEEVRNALKAN------TKVVYLETPANPTLKVTDIKAISNI 174 (400)
T ss_pred EEEecCccchHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHHhccC------CeEEEEECCCCCCCCcCCHHHHHHH
Confidence 66666666554333 34467788888754 799999988754 3477778899999999999999999
Q ss_pred HHHc--CCceeeeccc
Q psy852 221 AKEF--DVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~--~~~lHvDaA~ 234 (891)
|+++ ++++.+|.||
T Consensus 175 a~~~~~~i~livDea~ 190 (400)
T PRK06234 175 AHENNKECLVFVDNTF 190 (400)
T ss_pred HHhcCCCCEEEEECCC
Confidence 9997 7888888887
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.5e-05 Score=79.88 Aligned_cols=260 Identities=14% Similarity=0.080 Sum_probs=158.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~mD~~~ 545 (891)
+|-|+.|+-+..+.+... ..-.|++-..+||+-.-||...|.++..||.. +.+.++++.
T Consensus 81 ~t~GARe~KfavMhal~~-------------------~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~ 141 (382)
T COG1103 81 VTAGAREAKFAVMHALCK-------------------EGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEG 141 (382)
T ss_pred ecccchhhHHHHHHHhcc-------------------CCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHH
Confidence 677888777766655322 22358888999999999999999999999963 679999999
Q ss_pred HHHHHHhhhhcC-CccEEEEe-----cCCccc--------hhh-----hh-----------cCC-CCccEEEEcCcccCC
Q psy852 546 LRQVMQQDETMG-YIPFFVST-----TLGTTS--------CYR-----KS-----------QGI-EYADSFNVNVNKWLL 594 (891)
Q Consensus 546 Le~aI~~d~~~g-~ip~~Vva-----taGTT~--------c~~-----~l-----------dGi-~~aDSIs~d~HK~L~ 594 (891)
..+.|++-..++ ..|.+... +.|... |++ .+ .+- -++|+|.-|+||.|-
T Consensus 142 y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmA 221 (382)
T COG1103 142 YAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMA 221 (382)
T ss_pred HHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchh
Confidence 999999977765 43443332 334433 544 11 221 458999999999999
Q ss_pred cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 595 TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 595 ~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
+..+||++-++.+- -...+.....+....+ ....+.| +|.+..+.+-+++-+. .+. -+..+...+.+++|.
T Consensus 222 As~PiGvl~~~eE~-ae~V~r~Sg~~~~~KE---vellGCT---~rGapivTlmASfP~V-~eR-VkrWdeEv~kaR~fv 292 (382)
T COG1103 222 ASAPIGVLAMSEEW-AEIVLRRSGRAFPKKE---VELLGCT---VRGAPIVTLMASFPHV-VER-VKRWDEEVEKARWFV 292 (382)
T ss_pred ccCCeeEEeehhHH-HHHHHhhcccccccce---eeeeccc---ccCchHHHHHhcCHHH-HHH-HHHHHHHHHHHHHHH
Confidence 99999999887652 1112222212211111 1111111 2333333333332221 111 233456688999999
Q ss_pred HHhccCCCcEEeCC-C-ceeEEEEEecCCc--chhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHH
Q psy852 675 GKVRRDPRFEISND-V-RLGLVCFRLRSEN--NLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLA 749 (891)
Q Consensus 675 ~~L~~~~~~eil~~-~-~~~iV~Fr~~~~~--~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId 749 (891)
+.|.++.+++.++. | +-.++-|.-+... .++.....--|++.|.++|+.=+ ...-...+ .|+ +..+.|+|+
T Consensus 293 ~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI---~~G~Tk~~K~sv-yGl~~Eqve 368 (382)
T COG1103 293 AELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGI---QPGQTKYFKLSV-YGLSWEQVE 368 (382)
T ss_pred HHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCcccc---ccCceeEEEEEe-ecCCHHHHH
Confidence 99999999988764 3 3446666653321 01111112245666766665411 11112233 332 467999999
Q ss_pred HHHHHHHHHH
Q psy852 750 YKRSFFVRML 759 (891)
Q Consensus 750 ~li~~L~ei~ 759 (891)
..++++++++
T Consensus 369 ~V~~afkeI~ 378 (382)
T COG1103 369 YVVDAFKEIA 378 (382)
T ss_pred HHHHHHHHHH
Confidence 9999999987
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00017 Score=85.13 Aligned_cols=272 Identities=11% Similarity=0.073 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH
Q psy852 443 RRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA 522 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka 522 (891)
.-..++.+.+++.+..-+ .++ +++|++ ++..++.+ +.+ +.-+|++....|+++..+
T Consensus 154 ~~~~~Lee~La~~~~~~~--~i~--~s~G~~-a~~sai~a----~~~---------------~gd~Ii~d~~~H~s~~~~ 209 (481)
T PLN02822 154 DVHLDCETKIAKFLGTPD--SIL--YSYGLS-TIFSVIPA----FCK---------------KGDIIVADEGVHWGIQNG 209 (481)
T ss_pred HHHHHHHHHHHHHhCCCC--EEE--ECCHHH-HHHHHHHH----hCC---------------CCCEEEEeCCccHHHHHH
Confidence 345667777777776432 344 344444 44333321 111 223577888899999999
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhc----CCc-cEEEE----ecCCccc--------hhhh----------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM----GYI-PFFVS----TTLGTTS--------CYRK---------- 575 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~----g~i-p~~Vv----ataGTT~--------c~~~---------- 575 (891)
+.+.+.+++.+|.+ |.++|+..+++.... ... .++|+ ...|... |.++
T Consensus 210 ~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~ 284 (481)
T PLN02822 210 LYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESN 284 (481)
T ss_pred HHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCc
Confidence 99988888888875 567777777653222 112 23333 2234433 4331
Q ss_pred ----hc----------CC--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccc
Q psy852 576 ----SQ----------GI--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLS 639 (891)
Q Consensus 576 ----ld----------Gi--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~S 639 (891)
+. |+ ...|-++.+.+|.++.+- |+++ .+++.+.........| ++..+
T Consensus 285 s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G--G~i~-g~~~ii~~~~~~~~~~--------------~fsa~ 347 (481)
T PLN02822 285 SFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG--GFCT-GSARVVDHQRLSSSGY--------------VFSAS 347 (481)
T ss_pred cccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC--eEEE-cCHHHHHHHHhcCCce--------------eeccc
Confidence 11 12 256888999999987433 5554 4433332211111111 11111
Q ss_pred ccccchHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCC-cc-hhhhhhHHHHHHH
Q psy852 640 RRFRSLKLWFVIRTYG-LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSE-NN-LIADQNNRKLLED 716 (891)
Q Consensus 640 Rr~~aL~lW~~L~~lG-~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~-~~-~~~d~ln~~L~~~ 716 (891)
- .++.+.+++..+- .+...+..++..+++++|.+.|++.+++.+..++...++.+++.+. +. ..-....+.+.+.
T Consensus 348 l--Pp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~ 425 (481)
T PLN02822 348 L--PPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADR 425 (481)
T ss_pred c--CHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHH
Confidence 1 1122223322221 1223567788899999999999998888887777888999998542 10 0112345678888
Q ss_pred HH-hCCcEEEee--cccc---CCeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 717 IN-ASGRLHMVP--ASQE---QNDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 717 L~-~~G~~~~s~--s~~~---g~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
|. +.|++.... +... ....+ ++++...|++||+++++.|+++...+
T Consensus 426 Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 426 MLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASV 478 (481)
T ss_pred HHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 87 778875532 2221 12346 88888889999999999999887543
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-05 Score=87.54 Aligned_cols=238 Identities=14% Similarity=0.133 Sum_probs=137.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH--HHH-cCceEEEecCCCCCCcCHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA--AMM-AFVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka--a~l-~gv~v~~Vp~d~~G~mD~~ 544 (891)
++.||+++++.++.+... +.-.|+++...|.+...+ +.. ++++.+.++.++++.+|++
T Consensus 54 v~~~g~~a~~~~l~~~~~-------------------~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 114 (333)
T PRK10534 54 FLPTGTQANLVALLSHCE-------------------RGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLD 114 (333)
T ss_pred EeCchHHHHHHHHHHhcC-------------------CCCeeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHH
Confidence 567888888888775311 111355777777544443 233 4468888888888999999
Q ss_pred HHHHHHHhhhhc--C-CccEEEEecCCccc-----------hhh-----hhc-----------CC------CCccEEEEc
Q psy852 545 TLRQVMQQDETM--G-YIPFFVSTTLGTTS-----------CYR-----KSQ-----------GI------EYADSFNVN 588 (891)
Q Consensus 545 ~Le~aI~~d~~~--g-~ip~~VvataGTT~-----------c~~-----~ld-----------Gi------~~aDSIs~d 588 (891)
+|++++.+.... + ...++.+...|+.. |.+ .+| +. ...|.+.++
T Consensus 115 ~l~~~i~~~~~~~~~~~lv~l~np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s 194 (333)
T PRK10534 115 KVAAKIKPDDIHFARTRLLSLENTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTIC 194 (333)
T ss_pred HHHHhhcccCcCcccceEEEEecCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEE
Confidence 999998652111 1 12222233345543 322 112 11 234777889
Q ss_pred CcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHH
Q psy852 589 VNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668 (891)
Q Consensus 589 ~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~ 668 (891)
++|.++.| .|..++.+++.+.........+ +...+ ..++.+.+.+..+ +...+.+++..+
T Consensus 195 ~SK~~~~~--~G~~~~~~~~~i~~~~~~~~~~--------------~~~~~--~~~~~~a~~~~~l--~~~~~~~~~~~~ 254 (333)
T PRK10534 195 LSKGLGTP--VGSLLVGNRDYIKRARRWRKMT--------------GGGMR--QAGILAAAGLYAL--KHNVARLQEDHD 254 (333)
T ss_pred eEcCCCCc--ccceEEcCHHHHHHHHHHHHHh--------------CCchh--hHHHHHHHHHHHH--HhhHHHHHHHHH
Confidence 99988877 5755555655433211111000 00000 0111122222222 122355556666
Q ss_pred HHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHH
Q psy852 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDD 747 (891)
Q Consensus 669 lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~ed 747 (891)
.++++.+.|++. ++++. ++..+.+.+++.+. ....+.+.|.++|++...+ ..+ ++.+..+|.++
T Consensus 255 ~r~~l~~~L~~~-g~~~~-~~~~nfv~~~~~~~-------~~~~~~~~l~~~gi~v~~~------~~~rl~~~~r~t~e~ 319 (333)
T PRK10534 255 NAAWLAEQLREA-GADVM-RQDTNMLFVRVGEE-------QAAALGEYMRERNVLINAS------PIVRLVTHLDVSREQ 319 (333)
T ss_pred HHHHHHHHHHhC-CCccC-CCCceEEEEECCch-------hHHHHHHHHHHcCeeecCC------ceEEEEEEeCCCHHH
Confidence 788999999986 77765 34788888887521 2456778888999885322 134 66655679999
Q ss_pred HHHHHHHHHHHH
Q psy852 748 LAYKRSFFVRML 759 (891)
Q Consensus 748 Id~li~~L~ei~ 759 (891)
++++++.|++..
T Consensus 320 ~~~~~~~l~~~~ 331 (333)
T PRK10534 320 LAEVVAHWRAFL 331 (333)
T ss_pred HHHHHHHHHHHh
Confidence 999999998543
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-05 Score=91.12 Aligned_cols=80 Identities=9% Similarity=0.065 Sum_probs=59.2
Q ss_pred EEecCCCChHHHHHH-----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA-----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa-----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
|+++...+......+ +..+.+++.++.+ |+++|++++++. .+.+|++..-+|.+|.+-|+++|++
T Consensus 118 Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~dl~~I~~ 187 (418)
T PLN02242 118 VVASNTLYGGTHALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVVPG-----KTKVLYFESISNPTLTVADIPELAR 187 (418)
T ss_pred EEEcCCcHHHHHHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcCcC-----CCEEEEEecCCCCCCcccCHHHHHH
Confidence 666665544444333 2245566666543 899999888653 1347778888899999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++++|.||
T Consensus 188 la~~~gi~livDea~ 202 (418)
T PLN02242 188 IAHEKGVTVVVDNTF 202 (418)
T ss_pred HHHHhCCEEEEECCC
Confidence 999999999999988
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.6e-05 Score=84.57 Aligned_cols=88 Identities=16% Similarity=0.097 Sum_probs=70.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i 220 (891)
.|+++.-.+......+...|.+++.++.|+++.+|+++|++.+++. +-+|+++..+|.||.+-| +++|+++
T Consensus 115 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~klv~~~~p~NPtG~~~~~~~~~~i~~~ 188 (389)
T PRK05957 115 EIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPK------TRAIVTISPNNPTGVVYPEALLRAVNQI 188 (389)
T ss_pred EEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcC------ceEEEEeCCCCCCCcCcCHHHHHHHHHH
Confidence 3666665555555555666889999999988899999999988653 336667778999999988 8899999
Q ss_pred HHHcCCceeeeccccCC
Q psy852 221 AKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~ 237 (891)
|+++|+++.+|.+|+.+
T Consensus 189 a~~~~~~li~De~y~~~ 205 (389)
T PRK05957 189 CAEHGIYHISDEAYEYF 205 (389)
T ss_pred HHHcCcEEEEeccchhc
Confidence 99999999999999544
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.6e-05 Score=82.95 Aligned_cols=215 Identities=9% Similarity=0.046 Sum_probs=127.9
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe----cCCccc--------hhhh
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST----TLGTTS--------CYRK 575 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva----taGTT~--------c~~~ 575 (891)
.|+++...|.+...++.+.+.+++.++. +|+++|++++++.... ..-++++. ..|+.. |.++
T Consensus 102 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~-~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~ 175 (360)
T TIGR00858 102 LILSDALNHASLIDGCRLSGARVRRYRH-----NDVEHLERLLEKNRGE-RRKLIVTDGVFSMDGDIAPLPQLVALAERY 175 (360)
T ss_pred EEEEEccccHHHHHHHHhcCCceEEecC-----CCHHHHHHHHHHcccC-CCeEEEEeCCccCCCCCcCHHHHHHHHHHc
Confidence 5777888999999998888888887774 6899999998753211 11222222 223332 4331
Q ss_pred -----hc-----C--------------C--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCC
Q psy852 576 -----SQ-----G--------------I--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGA 628 (891)
Q Consensus 576 -----ld-----G--------------i--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~ 628 (891)
+| | + ...|-+..+.||+++.+ | |+++.. ++.. +.+. ....+.
T Consensus 176 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~-g-G~~~~~-~~~~-~~~~~~~~~~~------- 244 (360)
T TIGR00858 176 GAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSY-G-AYVAGS-QALI-DYLINRARTLI------- 244 (360)
T ss_pred CcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhcc-C-cEEEcC-HHHH-HHHHHhCccce-------
Confidence 11 1 1 13466778999988753 3 665543 3222 2221 111110
Q ss_pred ccccCCcccccc-cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhh
Q psy852 629 IDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIAD 707 (891)
Q Consensus 629 ~~~~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d 707 (891)
...+- .+....+..+++.+. ...+..++..++++++.+.|++. ++++. ++..+++.+.+.+.
T Consensus 245 -------~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~------ 307 (360)
T TIGR00858 245 -------FSTALPPAVAAAALAALELIQ--EEPWRREKLLALIARLRAGLEAL-GFTLM-PSCTPIVPVIIGDN------ 307 (360)
T ss_pred -------ecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHc-CCccC-CCCCCEEEEEeCCH------
Confidence 00011 111223334444332 23566788889999999999886 46654 44567888887421
Q ss_pred hhHHHHHHHHHhCCcEEEeecc---ccCCeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 708 QNNRKLLEDINASGRLHMVPAS---QEQNDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 708 ~ln~~L~~~L~~~G~~~~s~s~---~~g~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
...+++.++|.+.|++...... ..+...+ ++++.+++++|++++++.|+
T Consensus 308 ~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 308 ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 2356788999889987543211 1234457 99999999999999998763
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=8e-05 Score=86.68 Aligned_cols=288 Identities=17% Similarity=0.183 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccccc-CCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEeccc
Q psy852 436 SGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKE 514 (891)
Q Consensus 436 ~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~-~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~ 514 (891)
.||+++++ .+.+.|-++-||+-+. ++.|| -..-..+|.+.|.....+.. ..+-+.+++..
T Consensus 578 qGY~~lf~-------~Le~~Lc~iTG~D~~s~QPNsG-A~GEYaGL~~IRaY~~~kge-----------~hRnvClIPvS 638 (1001)
T KOG2040|consen 578 QGYQQLFT-------ELEKDLCEITGFDSFSLQPNSG-AQGEYAGLRVIRAYLESKGE-----------GHRNVCLIPVS 638 (1001)
T ss_pred hhHHHHHH-------HHHHHhheeecccceeecCCCC-cccchhhHHHHHHHHHhccC-----------CcceeEEEeec
Confidence 46666554 4556666666666554 33344 45567778888887654421 24668899999
Q ss_pred chHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc------hh---h-----hhcC
Q psy852 515 AHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS------CY---R-----KSQG 578 (891)
Q Consensus 515 aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~------c~---~-----~ldG 578 (891)
||-..-..|.|.|.++++|.+|.+|.+|..+|++.-++... .+.-++|. .|.|... |. + .+||
T Consensus 639 AHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~-~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDG 717 (1001)
T KOG2040|consen 639 AHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKD-NLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDG 717 (1001)
T ss_pred ccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhh-hhheeEEecccccccccccHHHHHHHHHhcCCEEEecC
Confidence 99998889999999999999999999999999999887644 23333332 2344433 42 2 2555
Q ss_pred C-------------CCccEEEEcCcccCCcccccE-----EEEEeCCccchhhhccCCCccccCCCCCcc---cc---CC
Q psy852 579 I-------------EYADSFNVNVNKWLLTAFDSS-----CLWVADRYKLTSALVVDPLYLQHGHEGAID---YR---HW 634 (891)
Q Consensus 579 i-------------~~aDSIs~d~HK~L~~P~g~G-----~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~---~~---~~ 634 (891)
. -++|---++.||.+..|-|-| =+-+|.. |. +||.+- ++.+ .. ..
T Consensus 718 ANMNAqVGlc~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~H--La-------pfLP~H--pVvs~~~~~~~~~~ 786 (1001)
T KOG2040|consen 718 ANMNAQVGLCRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LA-------PFLPSH--PVVSPGRPEDTSPV 786 (1001)
T ss_pred CCccceecccCCccccccceeecccceeeecCCCCCCCCCccchhhh--cc-------ccCCCC--CccCCCCCCCCCCc
Confidence 2 347999999999988876533 3344433 22 222211 0110 01 11
Q ss_pred ccccccccc---chHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEe----cCCcchhh
Q psy852 635 GIPLSRRFR---SLKL-WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRL----RSENNLIA 706 (891)
Q Consensus 635 ti~~SRr~~---aL~l-W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~----~~~~~~~~ 706 (891)
+.-.+-+|. .|++ |+.++.+|..|+...-+-.+-+|+|++++|+++ ++++-....+.|.-.| ++. ....
T Consensus 787 gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEFIlD~r~f-K~~a 863 (1001)
T KOG2040|consen 787 GSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEFILDLRPF-KKTA 863 (1001)
T ss_pred cceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeeeeeechhh-cccc
Confidence 111222333 3554 999999999999999999999999999999884 5554333333443222 111 0111
Q ss_pred hhhHHHHHHHHHhCCcEEEeec-cccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 707 DQNNRKLLEDINASGRLHMVPA-SQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 707 d~ln~~L~~~L~~~G~~~~s~s-~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+-....+..+|.+-|+- .|+ ++.-.+.+ +-....-+.+++|+|++++-.+-
T Consensus 864 gieavDvAKRL~DYgFH--aPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIr 916 (1001)
T KOG2040|consen 864 GIEAVDVAKRLMDYGFH--APTMSWPVAGTLMIEPTESEDKAELDRFCDALISIR 916 (1001)
T ss_pred CCcHHHHHHHHHhccCC--CCccccccCCceEeccCccccHHHHHHHHHHHHHHH
Confidence 23355788889887753 222 12222234 44444568889999999987665
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.4e-05 Score=85.77 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=60.5
Q ss_pred EEecCCCChHHH----HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~----kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+.. ..+...+.+++.++.+ |+++|++.+.+. +.+|.+...+|.+|.+.|+++|+++
T Consensus 99 Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~------t~~V~le~p~NPtg~v~dl~~I~~l 167 (418)
T TIGR01326 99 IVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DPEEFEKAIDEN------TKAVFAETIGNPAINVPDIEAIAEV 167 (418)
T ss_pred EEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHH
Confidence 666666664432 2334457788888753 899999988654 2366667778899999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++++|.+|+
T Consensus 168 a~~~~i~livD~t~~ 182 (418)
T TIGR01326 168 AHAHGVPLIVDNTFA 182 (418)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999884
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00024 Score=81.72 Aligned_cols=262 Identities=10% Similarity=0.047 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++.+.+++.+.. +. .++ .++|+++|..++..++.. .++.+|+.....|.++..++.
T Consensus 93 ~~~l~~~la~~~g~-~~-~~~---~~sG~~an~~ai~~l~~~-----------------~~~~~i~~~~~~h~s~~~~~~ 150 (407)
T PRK09064 93 HVELERELADLHGK-EA-ALV---FTSGYVSNDATLSTLAKL-----------------IPDCVIFSDELNHASMIEGIR 150 (407)
T ss_pred HHHHHHHHHHHhCC-Cc-EEE---ECcHHHHHHHHHHHHhCC-----------------CCCCEEEEeCcchHHHHHHHH
Confidence 34555666666653 32 233 345678888877665421 023356777778999988887
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC---Cccc--------hhhh-----hc-----C-----
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL---GTTS--------CYRK-----SQ-----G----- 578 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata---GTT~--------c~~~-----ld-----G----- 578 (891)
+.+.++..++. .|+++|++.++.........+++.... |+.. |.++ +| |
T Consensus 151 ~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~ 225 (407)
T PRK09064 151 RSRCEKHIFRH-----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPR 225 (407)
T ss_pred HcCCcEEEECC-----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCC
Confidence 77777666654 278899998874321111122222222 3322 3331 11 1
Q ss_pred ---------C-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHH
Q psy852 579 ---------I-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647 (891)
Q Consensus 579 ---------i-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l 647 (891)
+ +..|-+..+.+|.++.+ | |+++. +++.+ +.+. ....|. ++.. .-+..+...
T Consensus 226 g~g~~~~~~~~~~~div~~t~sKa~g~~-G-G~~~~-~~~~~-~~l~~~~~~~~------------~t~~-~~~~~~~aa 288 (407)
T PRK09064 226 GGGIAERDGLMDRIDIIEGTLAKAFGVM-G-GYIAG-SAALV-DAVRSYAPGFI------------FTTS-LPPAIAAAA 288 (407)
T ss_pred CCChHHhcCCCCCCeEEEEecchhhhcc-C-ceEec-CHHHH-HHHHHhCcccc------------ccCc-CCHHHHHHH
Confidence 1 23466767889988754 2 55443 33222 2111 111111 0100 112223334
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEe
Q psy852 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMV 726 (891)
Q Consensus 648 W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s 726 (891)
..+++.+... ....++..+++++|.+.|++. +++++. +..+++.|.+.. +.....+.++|.+ .|++...
T Consensus 289 ~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~iv~i~~~~------~~~~~~l~~~L~~~~gi~v~~ 358 (407)
T PRK09064 289 LASIRHLKES--NEERERHQERAAKLKAALDAA-GIPVMP-NESHIVPVMVGD------PEKCKKASDMLLEEHGIYVQP 358 (407)
T ss_pred HHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeCC------HHHHHHHHHHHHHhCCEEEee
Confidence 4555554433 234567788999999999885 566654 346777777632 1345678888865 5877432
Q ss_pred ec--c-ccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 727 PA--S-QEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 727 ~s--~-~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.. . ..+...+ ++++..+|++|+|+++++|+++.+
T Consensus 359 ~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~ 396 (407)
T PRK09064 359 INYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWA 396 (407)
T ss_pred ECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 21 1 1244567 999999999999999999998763
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0001 Score=82.34 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=68.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.+...++.+.+.+++.++. +|+++|++.+++.. +..+.+|+....++.+|.+.|+++|.++|++
T Consensus 102 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~ 174 (360)
T TIGR00858 102 LILSDALNHASLIDGCRLSGARVRRYRH-----NDVEHLERLLEKNR--GERRKLIVTDGVFSMDGDIAPLPQLVALAER 174 (360)
T ss_pred EEEEEccccHHHHHHHHhcCCceEEecC-----CCHHHHHHHHHHcc--cCCCeEEEEeCCccCCCCCcCHHHHHHHHHH
Confidence 4777788999999888777778877763 68999999887532 1124566666677899999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++.+|.+++
T Consensus 175 ~~~~li~De~~~ 186 (360)
T TIGR00858 175 YGAWLMVDDAHG 186 (360)
T ss_pred cCcEEEEECccc
Confidence 999999999994
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.8e-05 Score=82.82 Aligned_cols=270 Identities=14% Similarity=0.078 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-----
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC----- 518 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S----- 518 (891)
--..+...++-.|.+.++ |++. .++|..|+.-.+.|-.+..+.+ .+++|+..-.-
T Consensus 77 lp~~lgdklApLiGA~~~-Evvv---~dtts~nl~k~L~aalr~~~~r----------------~vIv~E~~~fpTdly~ 136 (407)
T COG3844 77 LPERLGDKLAPLIGARAG-EVVV---TDTTSINLFKVLAAALRPQEGR----------------RVIVSEGDNFPTDLYI 136 (407)
T ss_pred chhHHHHHhhhhhcCCCC-ceEE---eCCcchHHHHHHHHHhccCCCc----------------eEEeecCCCCCcchhh
Confidence 334566777888887777 5552 2345566666555544332211 24444443221
Q ss_pred HHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc------hhh------------h
Q psy852 519 VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS------CYR------------K 575 (891)
Q Consensus 519 v~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~------c~~------------~ 575 (891)
.+--+.+.++ --|..+++.|.+++++++++.+ +|+. -.|... |.. |
T Consensus 137 a~g~~~~~~~-----~~~~~~~~~P~~~~~~~~dd~A------vV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAH 205 (407)
T COG3844 137 AEGLADLLGI-----GYDLEGVIAPRALEEAITDDVA------VVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAH 205 (407)
T ss_pred hcchhhhhcc-----cccceeeeChHHHHHhhccceE------EEEeccccccccceeeHHHHHHHHHhcCceEEeehhc
Confidence 1112223322 2355678889999999998743 2221 123221 222 2
Q ss_pred hcC-------CCCccEEEEcCcccC-CcccccEEEEEeCCccchhhhccCCCccccCCCCCcccc-CC-ccccccccc--
Q psy852 576 SQG-------IEYADSFNVNVNKWL-LTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYR-HW-GIPLSRRFR-- 643 (891)
Q Consensus 576 ldG-------i~~aDSIs~d~HK~L-~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~-~~-ti~~SRr~~-- 643 (891)
-.| -.+||+-..|.||+| ++|-+.+.+++.++. .......-..|+.+... +... .+ ..++.|+|.
T Consensus 206 saGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h-~e~~~~~lsgW~gha~p--f~m~~~y~p~~ga~rf~~g 282 (407)
T COG3844 206 SAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRH-RERSWPPLSGWWGHARP--FAMEEVYAPGPGARRFLCG 282 (407)
T ss_pred ccCCcceeecccCCCeeeeeeceeccCCCCCceeEEecccc-ccccccccccccCCCCc--chhhhccCcCccccceeeC
Confidence 222 256899999999999 567777788876552 22222223456554321 1000 01 123344444
Q ss_pred ------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-C--CcEEeCCC----ceeEEEEEecCCcchhhhhhH
Q psy852 644 ------SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD-P--RFEISNDV----RLGLVCFRLRSENNLIADQNN 710 (891)
Q Consensus 644 ------aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~-~--~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln 710 (891)
...+-.+|...+.-++.+.-++.+.|+.+|.+.++.. + ++++..|. .-+-|+|.++ ..
T Consensus 283 t~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp---------~~ 353 (407)
T COG3844 283 TQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP---------HG 353 (407)
T ss_pred CcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC---------cH
Confidence 2355667777888889999999999999999999875 3 57777654 3478999985 45
Q ss_pred HHHHHHHHhCCcEEEeeccccCCeEE-EEecC-CCCHHHHHHHHHHHHHHHH
Q psy852 711 RKLLEDINASGRLHMVPASQEQNDEV-FELQE-RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 711 ~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~-~tT~edId~li~~L~ei~~ 760 (891)
.++.+.|.+.|++ ...+...++ |.+.+ |++-+||-.+++.|+++.+
T Consensus 354 ~~V~qaLi~rGVi----gD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~ 401 (407)
T COG3844 354 YQVMQALIDRGVI----GDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLD 401 (407)
T ss_pred HHHHHHHHHcCcc----ccccCCCeeeecCccceechhHHHHHHHHHHHHHH
Confidence 7899999999998 666677788 88877 8999999999999998874
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00011 Score=85.35 Aligned_cols=80 Identities=11% Similarity=-0.018 Sum_probs=58.6
Q ss_pred EEecCCCChHHHHHH-HH---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA-MM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa-~~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+......+ .. .+.++..++. .|+++|++.+++.+ .+|.+...+|.+|.+-|+++|.++
T Consensus 100 Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~-----~d~e~le~ai~~~t------klV~lesp~NPtG~v~dl~~I~~l 168 (425)
T PRK06084 100 IVSVAKLYGGTYNLLAHTLPRIGIETRFAAH-----DDIAALEALIDERT------KAVFCESIGNPAGNIIDIQALADA 168 (425)
T ss_pred EEEeCCCcchHHHHHHHhcccceeEEEEECC-----CCHHHHHHHhccCC------cEEEEeCCCCCCCeecCHHHHHHH
Confidence 555555554444433 22 2445555543 38999999987643 367778888999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++++++.+|.||+
T Consensus 169 a~~~~i~vVvD~a~a 183 (425)
T PRK06084 169 AHRHGVPLIVDNTVA 183 (425)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999984
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0001 Score=84.50 Aligned_cols=87 Identities=10% Similarity=-0.045 Sum_probs=68.6
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEE-ecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKIL-EPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V-~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-++.+....+...+.+++.+ +.+++ +.+|++.|++.+.+. +-+|+++..+|.||.+-+ +++|+
T Consensus 119 ~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~ 192 (398)
T PRK08363 119 EILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEK------TKAIAVINPNNPTGALYEKKTLKEIL 192 (398)
T ss_pred EEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcc------eEEEEEECCCCCCCcCcCHHHHHHHH
Confidence 47777778888888777666677777 56655 469999999887543 236666788999999877 88999
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|.||+.
T Consensus 193 ~~a~~~~~~li~Deay~~ 210 (398)
T PRK08363 193 DIAGEHDLPVISDEIYDL 210 (398)
T ss_pred HHHHHcCeEEEEhhhhhh
Confidence 999999999999999954
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00024 Score=81.82 Aligned_cols=262 Identities=9% Similarity=0.028 Sum_probs=147.3
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++.+.+++.+.. +. .++ + ++|+++|..++...-. . .+..+|+++...|.++..++.
T Consensus 93 ~~~Le~~la~~~g~-~~-~i~--~-~sG~~a~~~~i~~l~~-----~------------~~g~~vi~~~~~h~s~~~~~~ 150 (410)
T PRK13392 93 HVLLERELADLHGK-ES-ALL--F-TSGYVSNDAALSTLGK-----L------------LPGCVILSDALNHASMIEGIR 150 (410)
T ss_pred HHHHHHHHHHHhCC-CC-EEE--E-CcHHHHHHHHHHHHhc-----C------------CCCCEEEEehhhhHHHHHHHH
Confidence 34666777777764 33 334 2 3457888777653211 0 012367778889999988888
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hc-----------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQ----------- 577 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ld----------- 577 (891)
+.|.+++.++.+ |.++|++.++.........+++.. ..|+.. |.++ +|
T Consensus 151 ~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~ 225 (410)
T PRK13392 151 RSGAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGAR 225 (410)
T ss_pred HcCCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCC
Confidence 888887776542 567777777653221222223322 234433 3321 11
Q ss_pred --C-------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHH
Q psy852 578 --G-------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLW 648 (891)
Q Consensus 578 --G-------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW 648 (891)
| .+.+|-++.+.+|+++.+- |++.. +++...........|.. +... -+.....+.
T Consensus 226 g~g~~~~~~~~~~~div~~tlsK~~g~~G--G~~~~-~~~~~~~l~~~~~~~~~------------s~~~-~~~~~~a~~ 289 (410)
T PRK13392 226 GGGIAERDGLMDRIDMIQGTLAKAFGCLG--GYIAA-SADLIDFVRSFAPGFIF------------TTAL-PPAVAAGAT 289 (410)
T ss_pred CCchhhhccCCCCCcEEEEEChHhhhccc--chhhc-CHHHHHHHHHhCcchhc------------cCcC-CHHHHHHHH
Confidence 1 1245766778999888753 44433 33322211112222211 0000 011122333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEee
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVP 727 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~ 727 (891)
.+|+.+.. .....++..++++++.+.|++. ++++. +++.+++.+.+. . +....++.++|. +.|++....
T Consensus 290 aaL~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~-~-----~~~~~~~~~~L~~~~GI~v~~~ 359 (410)
T PRK13392 290 AAIRHLKT--SQTERDAHQDRVAALKAKLNAN-GIPVM-PSPSHIVPVMVG-D-----PTLCKAISDRLMSEHGIYIQPI 359 (410)
T ss_pred HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeC-C-----HHHHHHHHHHHHHhCCEEEeee
Confidence 44544332 2344566788899999999885 67654 455677666653 1 223567888886 578774322
Q ss_pred --cc-ccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 728 --AS-QEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 728 --s~-~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.. ..+...+ ++++...|++|+|+++++|+++.
T Consensus 360 ~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~ 395 (410)
T PRK13392 360 NYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIW 395 (410)
T ss_pred CCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 11 1244567 99999999999999999998875
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-05 Score=90.42 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=138.6
Q ss_pred ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCccccc
Q psy852 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDN 256 (891)
Q Consensus 177 id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~ 256 (891)
+|++++++++++.+ -+|.+...+|.+|.+-|+++|+++|+++|+++.+|.||+..+..
T Consensus 124 ~d~~~l~~~i~~~T------klV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~---------------- 181 (364)
T PRK07269 124 NTEEELIAAIEEDT------DIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQ---------------- 181 (364)
T ss_pred CCHHHHHHhcCcCc------eEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC----------------
Confidence 58999999987543 48888889999999999999999999999999999998321100
Q ss_pred CCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEE
Q psy852 257 LHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLH 336 (891)
Q Consensus 257 ~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (891)
T Consensus 182 -------------------------------------------------------------------------------- 181 (364)
T PRK07269 182 -------------------------------------------------------------------------------- 181 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--ceEEEEeccccchhhcccCccccCCCCCCcccccccc
Q psy852 337 VDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 414 (891)
Q Consensus 337 ~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~--~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 414 (891)
++. . ..+|-+..+.||++.++-+ .|+++.++...... +.. +.. ..
T Consensus 182 ---------------~pl-~--~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~-~~~---~~~----------~~- 228 (364)
T PRK07269 182 ---------------RPI-E--LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEK-LFY---NLN----------TT- 228 (364)
T ss_pred ---------------Cch-h--hCCcEEEecCceeccCCCcccceEEEeCcHHHHHH-HHH---HHH----------Hh-
Confidence 000 0 1479999999999998876 67777766532221 110 000 00
Q ss_pred cCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhcc
Q psy852 415 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKI 494 (891)
Q Consensus 415 ~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~ 494 (891)
+-...++..|..++.+.. +..++++..++|..+++.|.++|.++-+.-+-.||.-+....-..+-.++....+
T Consensus 229 ---G~~~s~~~a~l~~~~L~t--L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~~~~~~~f~~~l~-- 301 (364)
T PRK07269 229 ---GAVLSPFDSYLLMRGLKT--LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVADETRIPHILNSLK-- 301 (364)
T ss_pred ---CCCCCHHHHHHHHcCCCc--HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECCHHHHHHHHHhCC--
Confidence 112356778877766654 8889999999999999999999987655533334433322210111112222221
Q ss_pred Cccccccccc---cceEEEecccchHHHHHHHHH-cCc--eEEEecCCCCCCcCHHHHHHHHHh
Q psy852 495 HPFVDEGVLL---SKLMAYCSKEAHSCVEKAAMM-AFV--RLKILEPDDKNSLRGATLRQVMQQ 552 (891)
Q Consensus 495 ~~~~~~g~~~---~~~vI~~S~~aH~Sv~Kaa~l-~gv--~v~~Vp~d~~G~mD~~~Le~aI~~ 552 (891)
...-+... ..+++......|..+..-.+. .|+ .++++-+ |.=|+++|.+=|++
T Consensus 302 --~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsv---GlE~~~dli~dl~~ 360 (364)
T PRK07269 302 --VFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSI---GIEDARDLIADLKQ 360 (364)
T ss_pred --cceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEe---ccCCHHHHHHHHHH
Confidence 11111111 122232334566655433332 343 5677766 55567777655544
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0005 Score=81.41 Aligned_cols=223 Identities=11% Similarity=0.094 Sum_probs=132.3
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcC--------CccEEEEec----CCccc----
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG--------YIPFFVSTT----LGTTS---- 571 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g--------~ip~~Vvat----aGTT~---- 571 (891)
.|++.+..|.|+..++++.|.+++.+|.+ |+++|++.|++....+ ...++++.. .|+..
T Consensus 187 ~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~ 261 (489)
T PLN02483 187 LIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPE 261 (489)
T ss_pred EEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHH
Confidence 58899999999999999999999999864 5788888876532211 012333321 23332
Q ss_pred ----hhhh-----h-------------------cCC--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCc
Q psy852 572 ----CYRK-----S-------------------QGI--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLY 620 (891)
Q Consensus 572 ----c~~~-----l-------------------dGi--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Y 620 (891)
|+++ + -++ ..+|-+..+++|.++.+ | |+++ .+++.+. .+. ....+
T Consensus 262 I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~-G-G~i~-~~~~li~-~l~~~~~~~ 337 (489)
T PLN02483 262 IVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSC-G-GYIA-GSKELIQ-YLKRTCPAH 337 (489)
T ss_pred HHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccC-c-eEEE-cCHHHHH-HHHHhCccc
Confidence 3321 0 111 34688888999998753 3 5554 4443332 222 11111
Q ss_pred cccCCCCCccccCCcccccccccchHHHHHHHHH-HH---hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEE
Q psy852 621 LQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY-GL---SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF 696 (891)
Q Consensus 621 l~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l-G~---~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~F 696 (891)
.... + .-+..+...-.+|+.+ +. +-..++.++..+++++|.+.|++. ++++..+....++.+
T Consensus 338 ~~~~----------~---~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l 403 (489)
T PLN02483 338 LYAT----------S---MSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPI 403 (489)
T ss_pred cccC----------C---cCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEE
Confidence 1000 0 0001111111223322 11 223456778889999999999987 777776555567666
Q ss_pred EecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 697 RLRSENNLIADQNNRKLLEDINASGRLHMVPASQ----EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 697 r~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~----~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+... .....+.+.|.++|+.++. ... .+...+ ++++...|++|||++++.|+++..
T Consensus 404 ~l~~~------~~~~~~~~~Ll~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~ 465 (489)
T PLN02483 404 MLYNP------AKIPAFSRECLKQNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVGD 465 (489)
T ss_pred EECCH------HHHHHHHHHHHHCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 65321 2344678888888987552 221 222456 999988899999999999998874
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00015 Score=82.68 Aligned_cols=83 Identities=7% Similarity=0.078 Sum_probs=69.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCC-cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN-SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g-~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.+++|+++ .+|+++|++.+++.+ -+|+.+ +.+|...|+.+|.++|+
T Consensus 73 ~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~t------k~i~~~---~~~G~~~~~~~i~~la~ 143 (375)
T PRK11706 73 EVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKT------RAIVPV---HYAGVACEMDTIMALAK 143 (375)
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCC------eEEEEe---CCCCCccCHHHHHHHHH
Confidence 48888899999999988888899999999774 799999999886532 244443 35799999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++.+|+|++
T Consensus 144 ~~~i~vIeD~a~a 156 (375)
T PRK11706 144 KHNLFVVEDAAQG 156 (375)
T ss_pred HcCCEEEEECccc
Confidence 9999999999983
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.2e-05 Score=86.64 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=50.6
Q ss_pred HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 157 KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 157 kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
..+...|.+++.++.+++ +.+++.+++ .+-+|.+...+|.+|.+-|+++|+++|+++|+++++|.||+
T Consensus 103 ~~~~~~G~~v~~~~~~~~-----~~l~~~~~~------~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~ 170 (376)
T PRK06460 103 DYLKNWGVNVDASNPGSD-----NIIEKAKSK------RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFS 170 (376)
T ss_pred HHHHhhCcEEEEECCCCH-----HHHHHhcCC------CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcC
Confidence 444556778888876532 334333322 24578889999999999999999999999999999999883
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.7e-05 Score=88.50 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=75.0
Q ss_pred CCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc-cCHHHHHH
Q psy852 141 SKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-DNLAEIGP 219 (891)
Q Consensus 141 ~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-Dpl~~I~~ 219 (891)
.+-+.+++..+|-....++.++|.+++.|.+|.+|.||..+|++..++...+ -..+.+|.-+|. |.+ ..|.+|++
T Consensus 629 hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~---Laa~MvTYPST~-GvfE~~i~d~cd 704 (1001)
T KOG2040|consen 629 HRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDN---LAALMVTYPSTH-GVFEEGIDDICD 704 (1001)
T ss_pred cceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhh---hheeEEeccccc-ccccccHHHHHH
Confidence 3556777788999998888899999999999999999999999998876543 468888998775 666 56999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+.+++|--+-.|||-
T Consensus 705 ~iHehGGQVYlDGAN 719 (1001)
T KOG2040|consen 705 IIHEHGGQVYLDGAN 719 (1001)
T ss_pred HHHhcCCEEEecCCC
Confidence 999998777777765
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00021 Score=83.46 Aligned_cols=83 Identities=7% Similarity=0.063 Sum_probs=67.9
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
-.|+++..+|.+...++...|..++.+++| .++.+|++++++.+...+ .+|+++. ..|...++++|.++|
T Consensus 112 d~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~t------kaVi~~~---~~G~p~dl~~I~~la 182 (438)
T PRK15407 112 DEVITVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPKT------KAIMIAH---TLGNPFDLAAVKAFC 182 (438)
T ss_pred CEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCC------eEEEEeC---CCCChhhHHHHHHHH
Confidence 348888999999998887778899999987 578899999999886543 3444443 256678999999999
Q ss_pred HHcCCceeeeccc
Q psy852 222 KEFDVWLHVDGAY 234 (891)
Q Consensus 222 ~~~~~~lHvDaA~ 234 (891)
+++|++|.+|+|+
T Consensus 183 ~~~gi~vIeDaa~ 195 (438)
T PRK15407 183 DKHNLWLIEDNCD 195 (438)
T ss_pred HHCCCEEEEECcc
Confidence 9999999999988
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00014 Score=83.46 Aligned_cols=163 Identities=10% Similarity=-0.015 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..|.+...+...+-..+ .+.......+++.++.+.|++++|.+.+.. .+
T Consensus 53 ~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v-----------------------------~~ 101 (413)
T cd00610 53 NHPEVVEALKEQLAKLT--HFSLGFFYNEPAVELAELLLALTPEGLDKV-----------------------------FF 101 (413)
T ss_pred CCHHHHHHHHHHHHhCc--CccCcccCCHHHHHHHHHHHHhCCCCCCEE-----------------------------EE
Confidence 45666665555542211 111111235667777888888887432211 13
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcC------------CeEEEEecCC---
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF------------VRLKILEPDD--- 173 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~------------~~v~~V~~d~--- 173 (891)
+.||+. .+...+.++|.... .+-+++....-|.+..-++.+.+ .+++.+|.+.
T Consensus 102 ~~sgse-a~~~al~~~~~~~~-----------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (413)
T cd00610 102 VNSGTE-AVEAALKLARAYTG-----------RKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYR 169 (413)
T ss_pred cCcHHH-HHHHHHHHHHHHcC-----------CCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCcccc
Confidence 467765 45555555664311 12345555666777665554322 2466777663
Q ss_pred ---CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 174 ---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 174 ---~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+...|++.|++.+++. +..+.+|+++-..+.+|.+-| +++|.++|++||+++++|-+++|+
T Consensus 170 ~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~ 237 (413)
T cd00610 170 PPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGF 237 (413)
T ss_pred chhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 3456999999988753 223567777878888899887 999999999999999999999763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00022 Score=81.76 Aligned_cols=271 Identities=11% Similarity=0.052 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
...++++.+.+.+..... +++ ++.||+|+|..++..+|.... .+.+++....-|-+..-+.
T Consensus 80 ~~~~l~~~l~~~~~~~~~-~v~--~~~sgsea~~~al~~~~~~~~----------------~~~ii~~~~~yhg~~~~~~ 140 (413)
T cd00610 80 PAVELAELLLALTPEGLD-KVF--FVNSGTEAVEAALKLARAYTG----------------RKKIISFEGAYHGRTLGAL 140 (413)
T ss_pred HHHHHHHHHHHhCCCCCC-EEE--EcCcHHHHHHHHHHHHHHHcC----------------CCeEEEECCCcCCccHHHH
Confidence 345666666666652122 455 678999999999999885311 2235556666776665554
Q ss_pred HHcC------------ceEEEecCCC------CCCcCHHHHHHHHHhhhhcCCccEEEE----ecCCccc----------
Q psy852 524 MMAF------------VRLKILEPDD------KNSLRGATLRQVMQQDETMGYIPFFVS----TTLGTTS---------- 571 (891)
Q Consensus 524 ~l~g------------v~v~~Vp~d~------~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~---------- 571 (891)
.+.+ .++..+|.++ +...|+++|++++++.. +.+-++++ .+.|.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~~~~vi~~p~~~~~G~~~~~~~~l~~l~ 218 (413)
T cd00610 141 SLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHP--EEVAAVIVEPIQGEGGVIVPPPGYLKALR 218 (413)
T ss_pred HhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCC--CCEEEEEEccccCCCCCccCCHHHHHHHH
Confidence 4322 2456666653 34458888888887521 12222222 2234432
Q ss_pred --hhhh-----hc----CC-------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCC
Q psy852 572 --CYRK-----SQ----GI-------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG 627 (891)
Q Consensus 572 --c~~~-----ld----Gi-------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~ 627 (891)
|.++ +| |. -..|-++++ |+++.++++|+++.+++ +.+.+. ...+..
T Consensus 219 ~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~s--K~l~~g~~~g~~~~~~~--~~~~~~-~~~~~~----- 288 (413)
T cd00610 219 ELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLG--KGLGGGLPLGAVLGREE--IMDAFP-AGPGLH----- 288 (413)
T ss_pred HHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEEc--ccccCccccEEEEEcHH--HHHhhc-cCCCCC-----
Confidence 3321 11 11 023666554 99998888999887533 222220 000000
Q ss_pred CccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC-cEEe--CCCceeEEEEEecCCcc-
Q psy852 628 AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPR-FEIS--NDVRLGLVCFRLRSENN- 703 (891)
Q Consensus 628 ~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~-~eil--~~~~~~iV~Fr~~~~~~- 703 (891)
..+.. +-+........+++.+... +..++..++.+++.+.|++... ..++ ......++++.+.+...
T Consensus 289 -----~~t~~-~~~~~~~a~~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 359 (413)
T cd00610 289 -----GGTFG-GNPLACAAALAVLEVLEEE---GLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRAT 359 (413)
T ss_pred -----CCCCC-cCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCc
Confidence 00111 1122233445556655543 4556677778888888776421 1121 12345678888754210
Q ss_pred -hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 704 -LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 704 -~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
..-......+.+.|.+.|+.+..+. ...+ ++++...|++||+++++.|+++
T Consensus 360 ~~~~~~~~~~~~~~l~~~gv~v~~~~----~~~lR~~~~~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 360 KPPDKELAAKIIKAALERGLLLRPSG----GNVIRLLPPLIITEEEIDEGLDALDEA 412 (413)
T ss_pred CCcchHHHHHHHHHHHHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 0001245678888999998743332 3456 8888888999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00018 Score=81.75 Aligned_cols=82 Identities=9% Similarity=0.033 Sum_probs=67.3
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
-|+++..+=.+...+....|.+.+.|++|. .+.||++.+|++|.+.++ -++.|=.+ |..=|+++|.++|+
T Consensus 76 eVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tK----AIipVhl~-----G~~~dm~~i~~la~ 146 (374)
T COG0399 76 EVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTK----AIIPVHLA-----GQPCDMDAIMALAK 146 (374)
T ss_pred EEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCe----EEEEehhc-----cCCCCHHHHHHHHH
Confidence 488888888888888877888999999995 499999999999998753 13333333 44559999999999
Q ss_pred HcCCceeeeccc
Q psy852 223 EFDVWLHVDGAY 234 (891)
Q Consensus 223 ~~~~~lHvDaA~ 234 (891)
+||++|--|+|+
T Consensus 147 ~~~l~vIEDaAq 158 (374)
T COG0399 147 RHGLPVIEDAAQ 158 (374)
T ss_pred HcCCeEEEEcch
Confidence 999999999988
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.1e-05 Score=87.78 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=104.9
Q ss_pred HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCcc
Q psy852 160 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSF 239 (891)
Q Consensus 160 ~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~ 239 (891)
...|.+++.+++++...++++ .. .+-+|....-+|.++.+.|+++|+++|++++ +.||+|+|..+.
T Consensus 125 ~~~Gi~v~fvd~~~~~~~~l~-------~~-----~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~ 190 (384)
T PRK06434 125 KTLGIHVDYIDTDRLNSLDFD-------PS-----NYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYN 190 (384)
T ss_pred HhcCcEEEEECCCChhheeec-------CC-----CeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCccc
Confidence 446789999998754444321 11 1347777888889999999999999999998 457999843221
Q ss_pred ccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccc
Q psy852 240 ICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVET 319 (891)
Q Consensus 240 ~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (891)
.
T Consensus 191 ~------------------------------------------------------------------------------- 191 (384)
T PRK06434 191 Q------------------------------------------------------------------------------- 191 (384)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--ceEEEEeccccchhhcccCc
Q psy852 320 RGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDP 397 (891)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~--~g~~~~r~~~~~~~~~~~~~ 397 (891)
+++ . ..+|-+.+++||++.+|-+ .|+++.++...... +.
T Consensus 192 --------------------------------~pl-~--~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~-~~--- 232 (384)
T PRK06434 192 --------------------------------NPL-D--LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNN-LV--- 232 (384)
T ss_pred --------------------------------Cch-h--cCCCEEEeecccccCCCCCceEEEEecCcHHHHHH-HH---
Confidence 000 0 1479999999999988876 67777665432111 10
Q ss_pred cccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q psy852 398 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 398 ~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv 465 (891)
.+.. .+ +.....+..|..+ .|.+-+..++++..++|..+++.|.++|.++-+
T Consensus 233 -~~~~---------~~----G~~~~~~~A~l~~--~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V 284 (384)
T PRK06434 233 -ERRK---------TL----GSNPDPIQAYLAL--RGLKTLGLRMEKHNKNGMELARFLRDSKKISNV 284 (384)
T ss_pred -HHHH---------hc----CCCCCHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 0000 00 1112355666554 466677889999999999999999999987544
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.9e-05 Score=83.80 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=61.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+-.++..++...|.+++.+++| +++.||+++|++.|.+.++ .|++ +...|...|+.+|.++|+
T Consensus 67 eVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~------ai~~---~h~~G~~~d~~~i~~~~~ 137 (363)
T PF01041_consen 67 EVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTK------AILV---VHLFGNPADMDAIRAIAR 137 (363)
T ss_dssp EEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEE------EEEE---E-GGGB---HHHHHHHHH
T ss_pred eEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCcc------EEEE---ecCCCCcccHHHHHHHHH
Confidence 48899999999999998888999999999 7899999999999998753 3332 244566779999999999
Q ss_pred HcCCceeeeccc
Q psy852 223 EFDVWLHVDGAY 234 (891)
Q Consensus 223 ~~~~~lHvDaA~ 234 (891)
++|++|--|+|+
T Consensus 138 ~~~i~lIeD~a~ 149 (363)
T PF01041_consen 138 KHGIPLIEDAAQ 149 (363)
T ss_dssp HTT-EEEEE-TT
T ss_pred HcCCcEEEcccc
Confidence 999999999988
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.7e-06 Score=93.98 Aligned_cols=279 Identities=14% Similarity=0.109 Sum_probs=187.0
Q ss_pred HHHHHHHhhccC-CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH----HH
Q psy852 448 LAKLFEGKVRRD-PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----KA 522 (891)
Q Consensus 448 lAr~l~~~L~~~-~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~----Ka 522 (891)
+.+.+++.+... +. +|+ +++|+|+++..++.+...... .+.-.|+++..+|++.. ..
T Consensus 72 ~r~~la~~~~~~~~~-~v~--~t~g~t~~l~~~~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~ 133 (406)
T PRK09295 72 VRKQAALFINARSAE-ELV--FVRGTTEGINLVANSWGNSNV---------------RAGDNIIISEMEHHANIVPWQML 133 (406)
T ss_pred HHHHHHHHcCcCCCC-eEE--EeCCHHHHHHHHHHHhhhhcC---------------CCcCEEEECcchhhHHHHHHHHH
Confidence 334677777653 33 666 778999998877655322111 12235888899987653 34
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC---------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI--------- 579 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi--------- 579 (891)
+...|++++.+|.+++|.+|+++|+++++++++ .+ ...+.+..|+.. |++ .+|++
T Consensus 134 ~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~--lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~ 211 (406)
T PRK09295 134 CARVGAELRVIPLNPDGTLQLETLPALFDERTR--LLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVD 211 (406)
T ss_pred HHHcCcEEEEEecCCCCCCCHHHHHHhcCCCcE--EEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccC
Confidence 456789999999999999999999999976422 11 112234456654 433 13331
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC---------CCccccCCccc-ccccc-cch
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE---------GAIDYRHWGIP-LSRRF-RSL 645 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e---------~~~~~~~~ti~-~SRr~-~aL 645 (891)
..+|.+++++|| +++|.|+|+++++++. + +.+ +.+...+.. ..+......++ ++... ..+
T Consensus 212 ~~~~~~D~~~~s~~K-~~gp~G~G~l~~~~~~-~-~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~ 285 (406)
T PRK09295 212 VQALDCDFYVFSGHK-LYGPTGIGILYVKEAL-L-QEM---PPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGII 285 (406)
T ss_pred chhcCCCEEEeehhh-ccCCCCcEEEEEchHh-H-hhC---CCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHH
Confidence 247999999999 5569999999998652 1 111 111111100 00000011122 12222 246
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
.++.+++.+...|++++.++..++++++.+.|+++++++++.+ ...++|+|.+++. ..+.+.+.|.+.|+..
T Consensus 286 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~-------~~~~~~~~L~~~gI~v 358 (406)
T PRK09295 286 GLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH-------HAYDVGSFLDNYGIAV 358 (406)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCc-------CHHHHHHHHHhCCeEE
Confidence 7888888888889999999999999999999999999999875 3468999998643 3466788888899887
Q ss_pred Eeecccc--------CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 725 MVPASQE--------QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 725 ~s~s~~~--------g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+++.+. ...++ +|++.++|++|||+++++|+++.
T Consensus 359 ~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~ 402 (406)
T PRK09295 359 RTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIH 402 (406)
T ss_pred eccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 6665332 12457 99999999999999999999875
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00028 Score=80.13 Aligned_cols=219 Identities=11% Similarity=0.090 Sum_probs=124.5
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----CCccc--------hhhh
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----LGTTS--------CYRK 575 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~--------c~~~ 575 (891)
.|+++...|.+...++.+.++++..++ .+|+++|++.|.+..... .-++++.. .|... |+++
T Consensus 119 ~vi~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~~~-~~~v~~~~v~~~tG~~~~~~~i~~l~~~~ 192 (385)
T TIGR01825 119 IVLSDELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENPSYG-KKLIVTDGVFSMDGDVAPLPEIVELAERY 192 (385)
T ss_pred EEEEEccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhccCC-CeEEEEecCCcCCCCccCHHHHHHHHHHh
Confidence 577888899999888877777666553 588999999887643212 22333332 23222 4331
Q ss_pred -----hc-----C--------------C-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCCc
Q psy852 576 -----SQ-----G--------------I-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAI 629 (891)
Q Consensus 576 -----ld-----G--------------i-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~ 629 (891)
+| | + ...|....+.||+++.+- |+++. +++.+. .+. ....|...
T Consensus 193 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g--G~~~~-~~~~~~-~~~~~~~~~~~~------ 262 (385)
T TIGR01825 193 GAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG--GYAAG-HKELIE-YLKNRARPFLFS------ 262 (385)
T ss_pred CCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC--CEEec-CHHHHH-HHHHhCcccccc------
Confidence 11 1 1 234666789999997643 55543 333222 221 11112100
Q ss_pred cccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhh
Q psy852 630 DYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQN 709 (891)
Q Consensus 630 ~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~l 709 (891)
. ...+.....+..+++.+.. ..+..++..++++++.+.|++. ++++.. +..+++.+.+.+. ..
T Consensus 263 ---~----~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~------~~ 325 (385)
T TIGR01825 263 ---T----AQPPAVVAALAAAVDELQR--SPELMERLWDNTRFFKAGLGKL-GYDTGG-SETPITPVVIGDE------KA 325 (385)
T ss_pred ---C----CCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEECCH------HH
Confidence 0 0001111222233332211 2345666778899999999875 676653 3445666665321 23
Q ss_pred HHHHHHHHHhCCcEEEeec---cccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 710 NRKLLEDINASGRLHMVPA---SQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~s---~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+.+.|.++|++..... ...+...+ ++++..++++||+++++.|++++
T Consensus 326 ~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~ 379 (385)
T TIGR01825 326 AQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVG 379 (385)
T ss_pred HHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 4678888888898743211 11233456 88888999999999999999876
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=9e-05 Score=84.25 Aligned_cols=272 Identities=13% Similarity=0.136 Sum_probs=173.2
Q ss_pred HHHH-HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 446 CELA-KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 446 lelA-r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
++.+ +.+++.+...+. +|+ +++|+++++..++.+...... .+..+|+++..+|+|...++.
T Consensus 45 ~~~~r~~la~~~g~~~~-~i~--~~~g~t~a~~~~~~~~~~~~~---------------~~g~~vv~~~~~h~s~~~~~~ 106 (381)
T PRK02948 45 LQVCRKTFAEMIGGEEQ-GIY--FTSGGTESNYLAIQSLLNALP---------------QNKKHIITTPMEHASIHSYFQ 106 (381)
T ss_pred HHHHHHHHHHHhCCCCC-eEE--EeCcHHHHHHHHHHHHHHhcc---------------CCCCEEEECCcccHHHHHHHH
Confidence 3444 366666654444 566 678899999988776543210 123468899999999877764
Q ss_pred ---HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh-----hhcCC------
Q psy852 525 ---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR-----KSQGI------ 579 (891)
Q Consensus 525 ---l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~-----~ldGi------ 579 (891)
..|.+++.+|++++|.+|+++|++++++.+ ..+++. +..|+.. |++ ++|+.
T Consensus 107 ~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~----~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~ 182 (381)
T PRK02948 107 SLESQGYTVTEIPVDKSGLIRLVDLERAITPDT----VLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKL 182 (381)
T ss_pred HHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCC----EEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhcccc
Confidence 458899999999899999999999986532 122222 2334443 333 23321
Q ss_pred ------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHH
Q psy852 580 ------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT 653 (891)
Q Consensus 580 ------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~ 653 (891)
..+|.+++++||++ +|.|+|+++++++..+.+.... ...+.. +..++.. ....+.+-.+++.
T Consensus 183 ~~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~------~~~~~~--~~~~t~~---~~~~~a~~~al~~ 250 (381)
T PRK02948 183 PIDVFEMGIDSLSVSAHKIY-GPKGVGAVYINPQVRWKPVFPG------TTHEKG--FRPGTVN---VPGIAAFLTAAEN 250 (381)
T ss_pred ccCcccCCCCEEEecHHhcC-CCCcEEEEEEcCCCCCCCcccC------CCCCCC--cCCCCcc---HHHHHHHHHHHHH
Confidence 24799999999975 5999999999876322111000 000000 0001110 0112333444443
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEe--CCC---ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS--NDV---RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil--~~~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
+ .+.+++..++..+++++|.+.|++. ++++. +++ ...+++|.+.+. ...++...|.++|+....++
T Consensus 251 ~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~l~~~gI~v~~g~ 321 (381)
T PRK02948 251 I-LKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIKGI-------EGQYTMLECNRRGIAISTGS 321 (381)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeCCC-------CHHHHHHhcccCCEEEEchH
Confidence 3 2467888899999999999999987 34432 222 235788887643 24567777888898876554
Q ss_pred ccc-------------------CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 729 SQE-------------------QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 729 ~~~-------------------g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+. ....+ +|++.++|++|+|+++++|+++.+
T Consensus 322 ~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 373 (381)
T PRK02948 322 ACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGN 373 (381)
T ss_pred hcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 321 23567 999999999999999999998764
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00041 Score=79.20 Aligned_cols=87 Identities=10% Similarity=-0.064 Sum_probs=71.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
.|++..-+|.....++...|.+++.+++++ ++.+|+++|++.+... +-+|+++..+|.||.+-+ +++|++
T Consensus 113 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~i~~ 186 (387)
T PRK08912 113 EVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPR------TKAVLLNNPLNPAGKVFPREELALLAE 186 (387)
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCcc------ceEEEEeCCCCCcCcccCHHHHHHHHH
Confidence 477777888888888877788999999974 6789999999987543 236666788999999876 667899
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|+++++++.+|.+|+.
T Consensus 187 ~~~~~~~~ii~De~y~~ 203 (387)
T PRK08912 187 FCQRHDAVAICDEVWEH 203 (387)
T ss_pred HHHHCCeEEEEhhhhhh
Confidence 99999999999999953
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.3e-05 Score=87.03 Aligned_cols=264 Identities=13% Similarity=0.043 Sum_probs=155.7
Q ss_pred cccCCCCC-CHHHHHHHHHHHhcCCCCC------ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 21 HAYFPSGN-SYPSVLADMLSDAIGCIGF------SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~l~~~~n~~~~------~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
+.+-|.+. ..+.++..+...++|.++. ...-+|.+.++-.++.+.|.++++.|++.. -+|
T Consensus 9 ~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~-------v~~------ 75 (365)
T PLN02452 9 FNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYE-------VLF------ 75 (365)
T ss_pred EeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCce-------EEE------
Confidence 34444333 5588999999888764421 123478888999999999999999976521 011
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHH---HHHHHHcCCeEEEEe
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCV---EKAAMMAFVRLKILE 170 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv---~kaa~~~~~~v~~V~ 170 (891)
..+|||.+--+..+++.+.. .+ +.|++ ...++- ..+.+++...++. .
T Consensus 76 --------------l~Gsgt~~~ea~~~nl~~~~-------------~~-~l~~~-~G~fg~r~~~~a~~~g~~~~~~-~ 125 (365)
T PLN02452 76 --------------LQGGASTQFAAIPLNLCKPG-------------DK-ADFVV-TGSWSKKAAKEAKKYCKTNVIA-S 125 (365)
T ss_pred --------------EeCccHHHHHHHHHhcCCCC-------------Ce-EEEEE-CCHHHHHHHHHHHHhCCCcEEE-e
Confidence 23667654333344442211 11 23332 344443 2233445433332 2
Q ss_pred cCCCC---cccHHHHHHHHHhhhhcCCcceEEEeecccCcccc-ccCHHHHHHHHHHcCCceeeeccccCCccccCCCCc
Q psy852 171 PDDKN---SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS-FDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRP 246 (891)
Q Consensus 171 ~d~~g---~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga-vDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~ 246 (891)
....+ ..++++++ .+ ..+-.|.+|+-.|.+|. +.|+.++.+ +.+.||++..
T Consensus 126 ~~~~~~~~~~~~~~~~----~~----~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss----------- 180 (365)
T PLN02452 126 GKDEKYTKIPSVSEWE----LT----PDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSN----------- 180 (365)
T ss_pred cCCCCCCCCCChHHcC----CC----CCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCcc-----------
Confidence 22222 45666642 11 11458999999999999 699988863 6788999771
Q ss_pred cCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccc
Q psy852 247 FMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSY 326 (891)
Q Consensus 247 ~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (891)
.++..+++.
T Consensus 181 ----------------------~g~~pidv~------------------------------------------------- 189 (365)
T PLN02452 181 ----------------------FLSKPVDVS------------------------------------------------- 189 (365)
T ss_pred ----------------------ccCcccCHH-------------------------------------------------
Confidence 111111100
Q ss_pred cccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCC
Q psy852 327 RDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG 406 (891)
Q Consensus 327 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~ 406 (891)
..+-+..+.||.+ +|-|.|++++|++..- ..-...|.|+.....
T Consensus 190 ---------------------------------~~~v~~~saqK~l-GP~Gl~~v~vr~~~l~-~~~~~~~~~~~~~~~- 233 (365)
T PLN02452 190 ---------------------------------KYGVIYAGAQKNV-GPSGVTIVIIRKDLIG-NARPITPGMLDYKIH- 233 (365)
T ss_pred ---------------------------------HcCEEEEeccccc-CCCCeEEEEEcHHHHh-hcccCCCchhhHHHH-
Confidence 0122336999966 6999999999976321 111223444432211
Q ss_pred cccccccccCCCCCh-hHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCcc
Q psy852 407 AIDYRHWGIPLSRRF-RSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRF 462 (891)
Q Consensus 407 ~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~ 462 (891)
....+..++-+. ....+-.+++++-.+ |+..+.++..++++++++.|.+.++|
T Consensus 234 ---~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~ 288 (365)
T PLN02452 234 ---AENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF 288 (365)
T ss_pred ---HhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 001122233333 345778889988776 89999999999999999999988876
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.4e-05 Score=85.58 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=55.7
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...++.....+. ..|.+++.|+.++++. .+.+. +-+|.+..-+|.+|.+.|+++|++
T Consensus 91 ~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~--------~~~~~------t~lV~le~p~NPtg~v~di~~I~~ 156 (366)
T PRK07582 91 TVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE--------AALAG------ADLVLAETPSNPGLDVCDLAALAA 156 (366)
T ss_pred EEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH--------HhccC------ceEEEEECCCCCCCCccCHHHHHH
Confidence 37776777766655442 2467888888765431 11122 236667788889999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++.||+||
T Consensus 157 ~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 157 AAHAAGALLVVDNTT 171 (366)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999988
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00018 Score=82.86 Aligned_cols=218 Identities=15% Similarity=0.152 Sum_probs=112.2
Q ss_pred EEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c 572 (891)
.+++|...|+.....++ ..+++++.+|.++++.+| +++ +..+++ ++.|... +
T Consensus 156 ~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~~-----~a~v~vq~Pn~~G~~ed~~~i~~~~ 222 (429)
T PF02347_consen 156 KVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DDD-----TAAVMVQNPNTFGVFEDIKEIADIA 222 (429)
T ss_dssp EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------STT-----EEEEEEESS-TTSB--THHHHHHHH
T ss_pred EEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------ccC-----eEEEEeecCCCCceEeeHHHHHHHH
Confidence 49999999987766553 368899999999888888 222 111222 2344443 1
Q ss_pred hhh------------hc-----CCCCccEEEEcCcccCCcccc-----cEEEEEeCCccchhhhccCCCccccCCCCCcc
Q psy852 573 YRK------------SQ-----GIEYADSFNVNVNKWLLTAFD-----SSCLWVADRYKLTSALVVDPLYLQHGHEGAID 630 (891)
Q Consensus 573 ~~~------------ld-----Gi~~aDSIs~d~HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~ 630 (891)
+++ +- |--+||-+ +.-||-++.|.+ +|.+-+|+. +.+.+-+.--....+.++.
T Consensus 223 h~~gal~~~~ad~~aL~~l~~Pge~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~--l~r~lPGRiVG~t~D~~G~-- 297 (429)
T PF02347_consen 223 HAAGALVIVGADPNALGGLKSPGEYGADIV-VGEHQTFGIPMGFGGPGAGFFAVRED--LVRQLPGRIVGQTKDADGK-- 297 (429)
T ss_dssp HHTT-EEEECGGCCGCCTC--GGGGT-SEE-EECCTTTT---CCC-S--EEEEE-GG--GGGGS-S-EEEEEEBCCCS--
T ss_pred HHcCCEEEEecCHHHHhCcCChhhcCccEE-eeCCCCCcccCCCCCCCeeeEEEhhh--hhhhCCCceeccccccccc--
Confidence 110 11 12347888 778999999976 677888776 3322211100000000111
Q ss_pred ccCCcc--c----cccc------------ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee
Q psy852 631 YRHWGI--P----LSRR------------FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG 692 (891)
Q Consensus 631 ~~~~ti--~----~SRr------------~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~ 692 (891)
..+.+ + --|| +-++..|..+..+|.+|+++..++++.+|.|+.++|++..++.+.+++-..
T Consensus 298 -~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e 376 (429)
T PF02347_consen 298 -RAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFE 376 (429)
T ss_dssp -CCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSS
T ss_pred -ceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcee
Confidence 11111 1 1111 114577888999999999999999999999999999997333333332223
Q ss_pred EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 693 LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 693 iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
.|.....+ ....++.++....| +.. ...... .+ +++.-.+|++|||++++++
T Consensus 377 ~v~~~~~~-------~~~~~l~~~~~~~g-l~~--~~~~~~-~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 377 FVVVFSKD-------KEVEELLKRGIEGG-LNL--RYPDDG-ALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp EEEEESS--------HHHHHHHHTT-----EEE--GGG-SS-EEEEE--TT--HHHHHHHHH--
T ss_pred eeeecCCc-------HHHHHHHHHHHhcC-CCc--cccCCC-eEEEEccCCCCHHHHHHHHhcC
Confidence 33333321 12223555555566 212 222233 56 9999999999999999865
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00092 Score=76.93 Aligned_cols=231 Identities=10% Similarity=0.052 Sum_probs=128.4
Q ss_pred eEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhh---------cCCccEEEEecC----Cccc--
Q psy852 507 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDET---------MGYIPFFVSTTL----GTTS-- 571 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~---------~g~ip~~Vvata----GTT~-- 571 (891)
-.|++++..|.|+..++.+.+.+++.++.. |.+++++.++.... .....++++-+. |...
T Consensus 83 D~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l 157 (392)
T PLN03227 83 DLLVVDRGVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPL 157 (392)
T ss_pred CEEEEeccccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCH
Confidence 368999999999988887777777776653 34555554433211 011222332222 3222
Q ss_pred ------hhhh-----hc----------------------CCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCC
Q psy852 572 ------CYRK-----SQ----------------------GIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP 618 (891)
Q Consensus 572 ------c~~~-----ld----------------------Gi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~ 618 (891)
|+++ +| ....+|-++.+.+|+++ |. |.+++.+++.. +.+..
T Consensus 158 ~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~--gg~v~~~~~~~-~~~~~-- 231 (392)
T PLN03227 158 KELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SV--GGMTVGSEEVV-DHQRL-- 231 (392)
T ss_pred HHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-cc--CcEEecCHHHH-HHHHH--
Confidence 3331 11 12456999999999876 43 33333333222 11110
Q ss_pred CccccCCCCCccccCCcccccccccchHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhccC--C-------CcEEeCC
Q psy852 619 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY-GLSGLQKYIRRHCELAKLFEGKVRRD--P-------RFEISND 688 (891)
Q Consensus 619 ~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l-G~~G~~~~i~~~~~lA~~L~~~L~~~--~-------~~eil~~ 688 (891)
+ .+ ..++ +-...++-.|+++..+ ....-.+.+++..+++++|.+.|++. + ++.+...
T Consensus 232 -~-~~---------~~~~--~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~ 298 (392)
T PLN03227 232 -S-GS---------GYCF--SASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSD 298 (392)
T ss_pred -h-Cc---------Cccc--cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCC
Confidence 0 00 0111 1111233345555433 32334567888899999999999752 2 1122233
Q ss_pred CceeEEEEEecCCcchh---hhhhHHHHHHHHHhCCcEEEe-ec------cccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 689 VRLGLVCFRLRSENNLI---ADQNNRKLLEDINASGRLHMV-PA------SQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 689 ~~~~iV~Fr~~~~~~~~---~d~ln~~L~~~L~~~G~~~~s-~s------~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
+..+++.+.+.+..... -+.....+.+.|.++|++... +. .......+ ++++...|+||||+++++|++
T Consensus 299 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~ 378 (392)
T PLN03227 299 PISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGE 378 (392)
T ss_pred CCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 45678888885321000 011335888899999987532 11 11223456 999999999999999999999
Q ss_pred HHHH
Q psy852 758 MLGL 761 (891)
Q Consensus 758 i~~~ 761 (891)
++..
T Consensus 379 ~~~~ 382 (392)
T PLN03227 379 AVEA 382 (392)
T ss_pred HHHH
Confidence 8753
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0012 Score=76.16 Aligned_cols=160 Identities=9% Similarity=0.035 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..+.+...+....-+.....|.......++-+.+.+|+++..|++.... +.++ .
T Consensus 54 p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~------------~~I~--------------i 107 (405)
T PRK06207 54 PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAA------------DELI--------------I 107 (405)
T ss_pred CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------------CCEE--------------E
Confidence 3455665555544332222333333456788889999999999753210 1111 2
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC-----CCCcccHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-----DKNSLRGATLR 183 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-----~~g~id~~~L~ 183 (891)
|+|++ +.....+.. -.. +...|++..-+++.....+...|.+++.|+++ .+..+|+++|+
T Consensus 108 t~Ga~-~al~~~~~~-l~~-------------~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~ 172 (405)
T PRK06207 108 TPGTQ-GALFLAVAA-TVA-------------RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLE 172 (405)
T ss_pred eCCcH-HHHHHHHHH-hcC-------------CCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHH
Confidence 34443 322211111 111 12236666677777777777778899999886 35789999999
Q ss_pred HHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeecccc
Q psy852 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 184 ~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~G 235 (891)
+.+.+.. -+|+.+.-+|.||.+-+ +++|+++|++++++|.+|-+|+
T Consensus 173 ~~~~~~~------k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~ 221 (405)
T PRK06207 173 EAFKAGV------RVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYS 221 (405)
T ss_pred HhhhhcC------eEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 9886542 36677777999999987 6778888999999999999994
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=90.36 Aligned_cols=274 Identities=14% Similarity=0.086 Sum_probs=180.1
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH----H
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----A 522 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K----a 522 (891)
++.+.+++.+...+.-+++ +++|+++++..++.+..... .+...|+++..+|++... .
T Consensus 47 ~~~~~la~~~~~~~~~~v~--~~~g~t~a~~~~~~~l~~~~----------------~~g~~vl~~~~~~~~~~~~~~~~ 108 (373)
T cd06453 47 AAREKVARFINAPSPDEII--FTRNTTEAINLVAYGLGRAN----------------KPGDEIVTSVMEHHSNIVPWQQL 108 (373)
T ss_pred HHHHHHHHHhCCCCCCeEE--EeCCHHHHHHHHHHHhhhcC----------------CCCCEEEECcchhHHHHHHHHHH
Confidence 3444666666543222455 67899999887776643310 022358889999998643 3
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh-----hhcC--------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR-----KSQG-------- 578 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~-----~ldG-------- 578 (891)
+...|.+++.||.+.++.+|+++|++.++++. ..+++.. ..|+.. |++ ++|+
T Consensus 109 ~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~----~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~ 184 (373)
T cd06453 109 AERTGAKLKVVPVDDDGQLDLEALEKLLTERT----KLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMP 184 (373)
T ss_pred HhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc----eEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCcee
Confidence 44668899999999999999999999997632 1222222 245543 443 2232
Q ss_pred --C--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC--------CCccccCCccc-cccc-ccc
Q psy852 579 --I--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE--------GAIDYRHWGIP-LSRR-FRS 644 (891)
Q Consensus 579 --i--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e--------~~~~~~~~ti~-~SRr-~~a 644 (891)
+ ..+|++++++|||++. .++|+++++++. +. .+. .+..++.. ..+......+. ++.. ...
T Consensus 185 ~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~-~~-~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 258 (373)
T cd06453 185 VDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEEL-LE-EMP---PYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGA 258 (373)
T ss_pred eeccccCCCEEEeccccccCC-CCcEEEEEchHH-hh-cCC---CeecCCCccccccccccccCCCccccCCCCCCHHHH
Confidence 1 2589999999999887 789988887542 21 111 11111000 00000000111 1111 235
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 645 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--RLGLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 645 L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
+.+|.+++.+...|++++.++..++++++.+.|+++++++++.++ ..++++|++.+. ...++.+.|.+.|+
T Consensus 259 ~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~l~~~gi 331 (373)
T cd06453 259 IGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-------HPHDVATILDQYGI 331 (373)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-------CHHHHHHHHHHCCE
Confidence 788999999999999999999999999999999999999988543 467889988532 34678889988898
Q ss_pred EEEeeccc--------cCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 723 LHMVPASQ--------EQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 723 ~~~s~s~~--------~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
.+..+..+ .....+ ++++..+|++|||+++++|
T Consensus 332 ~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 332 AVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 75443321 123456 9999999999999999764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00046 Score=78.34 Aligned_cols=245 Identities=13% Similarity=0.076 Sum_probs=144.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC---CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD---KN 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~---~G 539 (891)
+|+ ++.|+++++..++.+... +.-.|++..-.|......+...|++++.+|.+. ++
T Consensus 86 ~i~--~t~g~~~al~~~~~~l~~-------------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 144 (382)
T PRK06108 86 RIA--VTSSGVQALMLAAQALVG-------------------PGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGW 144 (382)
T ss_pred eEE--EeCChHHHHHHHHHHhcC-------------------CCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCc
Confidence 455 678888887776654311 112366677788888888888899999999863 35
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc----------C------CCC---
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ----------G------IEY--- 581 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld----------G------i~~--- 581 (891)
.+|+++|++.++... ..++++ +-.|++. |.++ +| + ...
T Consensus 145 ~~d~~~l~~~~~~~~----~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~ 220 (382)
T PRK06108 145 TLDLDRLLAAITPRT----RALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEP 220 (382)
T ss_pred cCCHHHHHHhcCccc----eEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCC
Confidence 799999999886421 122222 2345442 3221 11 1 000
Q ss_pred --ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HH
Q psy852 582 --ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GL 656 (891)
Q Consensus 582 --aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~ 656 (891)
-.-+..+.+|.++.| ..+|+++...+ .+ +.+.....|.. .+ ...+.+.++...+ +.
T Consensus 221 ~~~~i~~~S~SK~~g~~G~RiG~~~~~~~-~~-~~~~~~~~~~~-----------~~------~~~~~q~a~~~~l~~~~ 281 (382)
T PRK06108 221 DDRIIFVNSFSKNWAMTGWRLGWLVAPPA-LG-QVLEKLIEYNT-----------SC------VAQFVQRAAVAALDEGE 281 (382)
T ss_pred cCCEEEEeechhhccCcccceeeeeCCHH-HH-HHHHHHHHhcc-----------cC------CChHHHHHHHHHHhCCh
Confidence 123456899977644 56899988543 22 22211001100 00 0112222222333 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCC
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQN 733 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~ 733 (891)
+-+++..++..++.+++.+.|++.+++++..+.....+.+++.+. .....+.+.|. +.|+.+..+... .+.
T Consensus 282 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~------~~~~~~~~~ll~~~gV~v~pg~~f~~~~~ 355 (382)
T PRK06108 282 DFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGV------TDSLALAKRLVDEAGLGLAPGTAFGPGGE 355 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCC------CCHHHHHHHHHHhCCEEEeCchhhCCCCC
Confidence 445677778888899999999888888876543344556677532 13457777775 578875544432 234
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+ ++++. ++++++++++.|++.+
T Consensus 356 ~~~Ris~~~--~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 356 GFLRWCFAR--DPARLDEAVERLRRFL 380 (382)
T ss_pred CEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 566 88876 7899999988887654
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0008 Score=79.03 Aligned_cols=250 Identities=12% Similarity=0.075 Sum_probs=137.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH-HHcCceEEEecCCC---------
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MMAFVRLKILEPDD--------- 537 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-~l~gv~v~~Vp~d~--------- 537 (891)
++.||++++.+++.+. . ..++ |+++ ..|+....+. .+.|.+++.+|+++
T Consensus 98 ~t~ggt~A~~~~~~al----l--------------~pGD--Vii~-~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~ 156 (460)
T PRK13238 98 PTHQGRAAEQILFPVL----I--------------KKGD--VVPS-NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHP 156 (460)
T ss_pred ECCCHHHHHHHHHHHh----C--------------CCCC--EEcc-CCcccchHHHHHHcCCEEEEEecccccccccccc
Confidence 6789999998886542 1 1123 4444 3477665554 57888999998853
Q ss_pred -CCCcCHHHHHHHHHhhhhcCCccEEEE----ecCC-ccc-----------hhhh-----hcC-----------------
Q psy852 538 -KNSLRGATLRQVMQQDETMGYIPFFVS----TTLG-TTS-----------CYRK-----SQG----------------- 578 (891)
Q Consensus 538 -~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ataG-TT~-----------c~~~-----ldG----------------- 578 (891)
.|.+|+++|+++|.+.... .+.++++ +..| +.. |.+| .|+
T Consensus 157 f~g~id~e~Le~~i~~~~~~-~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~ 235 (460)
T PRK13238 157 FKGNFDLEKLEALIEEVGAE-NVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGY 235 (460)
T ss_pred ccCCcCHHHHHHHHhhcCCC-ceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccc
Confidence 2559999999999863211 2333332 2334 332 4331 121
Q ss_pred ------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccC---CCccccCCCCCccccCCccccccccc
Q psy852 579 ------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD---PLYLQHGHEGAIDYRHWGIPLSRRFR 643 (891)
Q Consensus 579 ------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~---~~Yl~~~~e~~~~~~~~ti~~SRr~~ 643 (891)
...+|++++++||.+++|.| |+++.++.+.....-... ..++ .++-...+...
T Consensus 236 ~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~~g~~-----------t~~g~~~~~~~ 303 (460)
T PRK13238 236 KDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILYEGFP-----------TYGGLAGRDME 303 (460)
T ss_pred cCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcccccCCcc-----------cccCcHHHHHH
Confidence 03489999999999999997 888888754333211010 1111 01111111111
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc----chhhhhhHHHHHHHHH-
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN----NLIADQNNRKLLEDIN- 718 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~----~~~~d~ln~~L~~~L~- 718 (891)
|+. ..|+..-. ...++...+.+++|.+.|++. ++.++.+....-|...+.... .+..+ ...+..+|.
T Consensus 304 Ala--~~l~e~~~---~~~~~~~~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~--~~~~a~~L~~ 375 (460)
T PRK13238 304 ALA--VGLYEGMD---EDYLAYRIGQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKFLPHIPAEQFP--AQALACELYL 375 (460)
T ss_pred HHH--hhHHHhhC---hHHHHHHHHHHHHHHHHHHHC-CCCeEccCCceEEEEEchhcCCCCCCCCCc--hHHHHHHHHH
Confidence 111 11111101 123334455679999999885 888887655444444443210 01111 356666664
Q ss_pred hCCcEEEeecc-------ccC------CeEE-EEecC-CCCHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMVPAS-------QEQ------NDEV-FELQE-RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 719 ~~G~~~~s~s~-------~~g------~~~l-~sv~~-~tT~edId~li~~L~ei~ 759 (891)
+.|+..+-+.. ..+ ...+ +++.. --|.+++|.+++.|+++.
T Consensus 376 e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~ 431 (460)
T PRK13238 376 EAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVK 431 (460)
T ss_pred HcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHH
Confidence 57776433221 111 2455 77655 349999999999999876
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00066 Score=77.53 Aligned_cols=143 Identities=13% Similarity=0.045 Sum_probs=95.3
Q ss_pred ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhc
Q psy852 48 SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQ 127 (891)
Q Consensus 48 ~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~ 127 (891)
.|...+...++...+.+++.+..|++...- +. + ..|+||+..-.+.+. +...
T Consensus 56 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~------~~------i--------------~~t~G~~~al~~~~~--~~~~ 107 (387)
T PRK07777 56 QYPPGPGIPELRAAIAAQRRRRYGLEYDPD------TE------V--------------LVTVGATEAIAAAVL--GLVE 107 (387)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------Cc------E--------------EEeCCcHHHHHHHHH--HhcC
Confidence 344445567888888999998888753210 00 1 134566432111111 1111
Q ss_pred cccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC---CcccHHHHHHHHHhhhhcCCcceEEEeecc
Q psy852 128 KKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK---NSLRGATLRQVMQQDETMGYIPFFVSTTLG 204 (891)
Q Consensus 128 ~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~---g~id~~~L~~~l~~~~~~g~~p~~V~~t~G 204 (891)
+...|++..-.|.+...++...+.+++.++.+++ +.+|+++|++.+.+. +-+|+++..
T Consensus 108 -------------~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p 168 (387)
T PRK07777 108 -------------PGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPR------TRALIVNSP 168 (387)
T ss_pred -------------CCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcc------cEEEEEcCC
Confidence 1123666666777777777777788999998765 469999999988643 235566677
Q ss_pred cCcccccc---CHHHHHHHHHHcCCceeeeccccCC
Q psy852 205 TTSCCSFD---NLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 205 tt~~GavD---pl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+|.||.+- ++++|+++|+++++++.+|-+|+++
T Consensus 169 ~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~ 204 (387)
T PRK07777 169 HNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHL 204 (387)
T ss_pred CCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhc
Confidence 89999974 5889999999999999999999543
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.6e-05 Score=86.37 Aligned_cols=142 Identities=7% Similarity=0.012 Sum_probs=99.2
Q ss_pred cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcc
Q psy852 49 WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQK 128 (891)
Q Consensus 49 ~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~ 128 (891)
|.......+++..+.+++.+++|.+.... .. + ..|+||+. .....+. +-..
T Consensus 63 Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~-----~~-i--------------------~~t~G~~~-al~~~~~-~~~~- 113 (386)
T PRK09082 63 YPPMTGVAALREAIAAKTARLYGRQYDAD-----SE-I--------------------TVTAGATE-ALFAAIL-ALVR- 113 (386)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCCC-----Cc-E--------------------EEeCCHHH-HHHHHHH-HHcC-
Confidence 33344567889999999999998753210 00 0 12456642 2221111 1111
Q ss_pred ccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCc
Q psy852 129 KIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS 207 (891)
Q Consensus 129 ~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~ 207 (891)
+...|++..-+|.+...++...|.+++.++++. ++.+|+++|++.+++. +.+|+++.-+|.
T Consensus 114 ------------~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NP 175 (386)
T PRK09082 114 ------------PGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPR------TRLIILNTPHNP 175 (386)
T ss_pred ------------CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCcc------ceEEEEeCCCCC
Confidence 122477778899999888877788999999974 5789999999988643 335666667899
Q ss_pred cccc---cCHHHHHHHHHHcCCceeeeccccCC
Q psy852 208 CCSF---DNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 208 ~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
||.+ +++++|+++|+++++++++|.+|+.+
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~ 208 (386)
T PRK09082 176 SGTVWSAADMRALWQLIAGTDIYVLSDEVYEHI 208 (386)
T ss_pred CCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhh
Confidence 9977 88999999999999999999999644
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.1e-05 Score=85.69 Aligned_cols=273 Identities=11% Similarity=0.052 Sum_probs=169.9
Q ss_pred HhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----HHcCce
Q psy852 454 GKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVR 529 (891)
Q Consensus 454 ~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~l~gv~ 529 (891)
+.+...++ +|+ +++|+|+++..++... + +.. .++.+|+++..+|.|+..++ ...|++
T Consensus 80 ~l~g~~~~-~v~--~~~~~t~~l~~~~~~~---~-~~~------------~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~ 140 (406)
T TIGR01814 80 RLVGAKED-EVV--VMNTLTINLHLLLASF---Y-KPT------------PKRYKILLEAKAFPSDHYAIESQLQLHGLT 140 (406)
T ss_pred cccCCCCC-cEE--EeCCchHHHHHHHHHh---c-CCc------------CCccEEEecCCCCChHHHHHHHHHHhcCCC
Confidence 55665554 566 6778899888776543 1 000 01336889999999865543 345666
Q ss_pred E----EEecCCCCCCcCHHHHHHHHHhhhhc-CCc-cEEEEecCCccc--------hhhh-----hcCC-----------
Q psy852 530 L----KILEPDDKNSLRGATLRQVMQQDETM-GYI-PFFVSTTLGTTS--------CYRK-----SQGI----------- 579 (891)
Q Consensus 530 v----~~Vp~d~~G~mD~~~Le~aI~~d~~~-g~i-p~~VvataGTT~--------c~~~-----ldGi----------- 579 (891)
+ +.++.+.+|.+|++++++.++....+ ..+ ...|....|... |+++ +|++
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~ 220 (406)
T TIGR01814 141 VEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLH 220 (406)
T ss_pred cccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccc
Confidence 6 57777778999999999998643211 111 112333456655 4442 3331
Q ss_pred -CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCcc------ccCCccc-ccccc-cchHHHHH
Q psy852 580 -EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAID------YRHWGIP-LSRRF-RSLKLWFV 650 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~------~~~~ti~-~SRr~-~aL~lW~~ 650 (891)
..+|.+++++||||++|.| |.++++.+.. .........|........++ .....++ ++-.. ..+.+-.+
T Consensus 221 ~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~a 298 (406)
T TIGR01814 221 DWGVDFACWCTYKYLNAGPG-AGAFVHEKHA-HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGS 298 (406)
T ss_pred cCCCCEEEEcCccccCCCCC-eEEEEehhhh-hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHH
Confidence 2489999999999987768 6677655432 11100111221111000000 0000111 11111 12455667
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccC----CCcEEeCCC----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 651 IRTYGLSGLQKYIRRHCELAKLFEGKVRRD----PRFEISNDV----RLGLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 651 L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~----~~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
++.+-..|++++.++...+++++.+.|++. ++++++++. ..++|+|.++ . ..+.+.+.|.++|+
T Consensus 299 l~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~-------~~~~~~~~L~~~gi 370 (406)
T TIGR01814 299 LDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V-------PGKAVFQALIKRGV 370 (406)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C-------CHHHHHHHHHHCCE
Confidence 777777889999999999999999999875 468888753 2468999985 2 24678888988898
Q ss_pred EEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHH
Q psy852 723 LHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 723 ~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~ 759 (891)
+.. ......+ +|+ +.+||++|||+++++|++++
T Consensus 371 ~v~----~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 371 IGD----KREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred EEe----ccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 632 2333467 998 68999999999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.4e-05 Score=89.61 Aligned_cols=277 Identities=13% Similarity=0.096 Sum_probs=183.6
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH----HHHHH
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----KAAMM 525 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~----Kaa~l 525 (891)
+.+++.++..+.=+++ +++|+++++..++.+...... .+...|+++..+|++.. +++..
T Consensus 69 ~~ia~~~~~~~~~~v~--~~~g~t~~l~~~~~~~~~~~~---------------~~g~~vl~~~~~~~s~~~~~~~~~~~ 131 (403)
T TIGR01979 69 EKVAKFINAASDEEIV--FTRGTTESINLVAYSWGDSNL---------------KAGDEIVISEMEHHANIVPWQLLAER 131 (403)
T ss_pred HHHHHHhCcCCCCeEE--EeCCHHHHHHHHHHHhhhhcC---------------CCCCEEEECcchhhHHHHHHHHHHHh
Confidence 4566666654222566 678889997776655432111 12346889999988754 44556
Q ss_pred cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC----------
Q psy852 526 AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI---------- 579 (891)
Q Consensus 526 ~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi---------- 579 (891)
.|++++.+|++++|.+|+++|+++++++++ .+++. +..|+.. |+++ +|+.
T Consensus 132 ~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~----lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~ 207 (403)
T TIGR01979 132 TGATLKFIPLDDDGTLDLDDLEKLLTEKTK----LVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDV 207 (403)
T ss_pred cCcEEEEEecCCCCCCCHHHHHHHhccCCe----EEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCc
Confidence 789999999999999999999999976422 22222 2345543 3331 3321
Q ss_pred --CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCC--------CCCccccCCccc-ccccc-cchHH
Q psy852 580 --EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH--------EGAIDYRHWGIP-LSRRF-RSLKL 647 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~--------e~~~~~~~~ti~-~SRr~-~aL~l 647 (891)
..+|.+++++||++ +|.|+|+++++++ .+ +.+. .+...+. ...+....+.++ ++... ..+.+
T Consensus 208 ~~~~~d~~~~s~~K~~-gp~G~g~l~~~~~-~~-~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 281 (403)
T TIGR01979 208 QALDCDFYVFSGHKMY-GPTGIGVLYGKEE-LL-EQMP---PFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGL 281 (403)
T ss_pred cccCCCEEEEeccccc-CCCCceEEEEchH-HH-hcCC---CeecCCCceeecccCccccCCChhhcCCCCccHHHHHHH
Confidence 24899999999976 5999999998765 22 1111 1111000 000000111122 12222 24678
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----RLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 648 W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
+.+++.+...|++++.++..++++++.++|+++++++++.+. ..++++|++.+. ...++.+.|.+.|+.
T Consensus 282 ~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~gI~ 354 (403)
T TIGR01979 282 GAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGV-------HPHDVGTILDEEGIA 354 (403)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCc-------CHHHHHHHHhhCCEE
Confidence 888888888899999999999999999999999999998654 368999998643 245677888888987
Q ss_pred EEeeccc--------cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 724 HMVPASQ--------EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 724 ~~s~s~~--------~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
...++.+ .....+ +|++.++|++|||+++++|+++..
T Consensus 355 v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~ 400 (403)
T TIGR01979 355 VRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRK 400 (403)
T ss_pred EcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 5543311 113457 999999999999999999998764
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0003 Score=80.79 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=107.1
Q ss_pred EEEecccchHHHH----HHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------h
Q psy852 508 MAYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~----Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c 572 (891)
.|+++...|.+.. +.+...|++++.++.+ |+++|++++. . ...+++.+..|.+. |
T Consensus 104 ~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~-~----tklV~ie~pt~~~~~~~dl~~i~~la 173 (389)
T PRK05968 104 RIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKALP-G----AKLLYLESPTSWVFELQDVAALAALA 173 (389)
T ss_pred EEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhcc-c----CCEEEEECCCCCCCcHHHHHHHHHHH
Confidence 3666666666533 3445578888888754 7888888773 1 12344444444442 2
Q ss_pred hhh-----hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ +|+ + .++|.+..++||++++|-+ .|+++ .+++.+.........++.
T Consensus 174 ~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~-~~~~~~~~l~~~~~~~~g------------ 240 (389)
T PRK05968 174 KRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVA-GSKEHIARINAEAYPYLG------------ 240 (389)
T ss_pred HHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEE-ECHHHHHHHHHHHHHhCC------------
Confidence 221 222 1 2579999999999999865 46554 444333221111111110
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc------------eeEEEEEecCCc
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR------------LGLVCFRLRSEN 702 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~------------~~iV~Fr~~~~~ 702 (891)
. ....+..|.. ..+.+.+..++++..++++++.+.|+++|.++.+..|. .++++|.+.+.
T Consensus 241 -~----~~~~~~A~~~--l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~- 312 (389)
T PRK05968 241 -A----KLSPFEAWLL--LRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG- 312 (389)
T ss_pred -C----CCChHHHHHH--HcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH-
Confidence 0 1123444544 34666778899999999999999999999987665331 35999999631
Q ss_pred chhhhhhHHHHHHHHHhCC
Q psy852 703 NLIADQNNRKLLEDINASG 721 (891)
Q Consensus 703 ~~~~d~ln~~L~~~L~~~G 721 (891)
....++.+.|...+
T Consensus 313 -----~~~~~f~~~L~~~~ 326 (389)
T PRK05968 313 -----IDVRAFADALKLFR 326 (389)
T ss_pred -----HHHHHHHHhCCccE
Confidence 23457777776644
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-05 Score=89.86 Aligned_cols=284 Identities=13% Similarity=0.023 Sum_probs=189.0
Q ss_pred HHHHH-HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH----
Q psy852 445 HCELA-KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV---- 519 (891)
Q Consensus 445 ~lelA-r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv---- 519 (891)
.++.+ +.+++.+...+.-+|+ +++|+|+++..++.+..... ..+.-.|+++..+|++.
T Consensus 61 ~~~~~r~~la~~~g~~~~~~i~--~t~g~t~~l~~~~~~~~~~~---------------~~~gd~Vl~~~~~~~s~~~~~ 123 (398)
T TIGR03392 61 RYELARQQVARFLNAPDAENIV--WTRGTTESINLVAQSYARPR---------------LQPGDEIIVSEAEHHANLIPW 123 (398)
T ss_pred HHHHHHHHHHHHhCCCCCCeEE--EeCChHHHHHHHHHHhhhcc---------------CCCCCEEEECCcchhHHHHHH
Confidence 34433 3666777653222566 67899999887776542100 01123588899999874
Q ss_pred HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhhh-----hcCC------
Q psy852 520 EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYRK-----SQGI------ 579 (891)
Q Consensus 520 ~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~~-----ldGi------ 579 (891)
...+...|++++.+|++.++.+|+++|+++|++.++ .+ ...+.+..|+.. |+++ +|++
T Consensus 124 ~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~--lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~ 201 (398)
T TIGR03392 124 LMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTR--ILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHG 201 (398)
T ss_pred HHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCce--EEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCC
Confidence 344466789999999998899999999999976432 11 112234566665 4331 2321
Q ss_pred ------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC------CCccc--cCCccc-ccccc-c
Q psy852 580 ------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE------GAIDY--RHWGIP-LSRRF-R 643 (891)
Q Consensus 580 ------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e------~~~~~--~~~ti~-~SRr~-~ 643 (891)
-.+|.+++++|| +++|.|+|+++++++ .+. .+. .+...+.. ..+.+ ....++ ++..+ .
T Consensus 202 ~~~~~~~~~d~~~~s~~K-~~gp~G~G~l~~~~~-~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~ 275 (398)
T TIGR03392 202 PPDVQALDIDFYAFSGHK-LYGPTGIGVLYGKTE-LLE-AMP---PWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAG 275 (398)
T ss_pred CCChhhcCCCEEEEeccc-ccCCCceEEEEEcHH-HHh-hCC---CeecCCceEeeccccccccCCChhhccCCCCCHHH
Confidence 147999999999 456889999998755 221 111 11111000 00000 001111 12222 3
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
.+.+..+++.+...|++++.++..++++++.+.|++++++++..++..++++|++.+. .++.+.+.|.++|+.
T Consensus 276 ~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-------~~~~l~~~L~~~gI~ 348 (398)
T TIGR03392 276 VIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-------HHSDLAALLAESGIA 348 (398)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-------CHHHHHHHHHhCCEE
Confidence 4678888888888899988899999999999999999999988777788999998643 356788889889988
Q ss_pred EEeecccc--------CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 724 HMVPASQE--------QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 724 ~~s~s~~~--------g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+..++.+. ...++ +|++.++|++|||+++++|++++.
T Consensus 349 v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~ 394 (398)
T TIGR03392 349 LRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALE 394 (398)
T ss_pred EecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 76665432 13467 999999999999999999998764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.8e-05 Score=85.54 Aligned_cols=89 Identities=10% Similarity=0.152 Sum_probs=70.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~ 218 (891)
.|++++-+|......+...+.+++.+++++ .+.+|+++|++.+++. +.+|+++..+|.||.+ +++++|+
T Consensus 122 ~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~s~~~~~~i~ 195 (409)
T PLN02656 122 NILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQN------TVALVIINPGNPCGNVYSYQHLKKIA 195 (409)
T ss_pred eEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccC------ceEEEEECCCCCCCCCCCHHHHHHHH
Confidence 377777777766666666788999999863 3579999999887543 2466666789999999 6789999
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|++++++|++|.+|+.+.
T Consensus 196 ~~a~~~~~~ii~De~y~~~~ 215 (409)
T PLN02656 196 ETAEKLKILVIADEVYGHLA 215 (409)
T ss_pred HHHHHcCCEEEEehhhhhcc
Confidence 99999999999999996543
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00056 Score=77.91 Aligned_cols=255 Identities=9% Similarity=0.044 Sum_probs=138.5
Q ss_pred HhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEe
Q psy852 454 GKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKIL 533 (891)
Q Consensus 454 ~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~V 533 (891)
+.+...+. +++ ++.|+++++..++.+.-. . ++ .|+++.-.+.....++...|.+++.+
T Consensus 77 ~~l~~~~~-~v~--~~~g~t~al~~~~~~~~~--------------~----gd-~vl~~~p~y~~~~~~~~~~g~~~~~v 134 (380)
T PRK06225 77 KDLGLDDD-EAL--ITAGATESLYLVMRAFLS--------------P----GD-NAVTPDPGYLIIDNFASRFGAEVIEV 134 (380)
T ss_pred HhcCCCCC-cEE--EeCCHHHHHHHHHHHhcC--------------C----CC-EEEEcCCCCcchHHHHHHhCceEEee
Confidence 33433333 566 788999998888765311 0 11 25555555666667777788899999
Q ss_pred cCCC---CCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hcCC------------
Q psy852 534 EPDD---KNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQGI------------ 579 (891)
Q Consensus 534 p~d~---~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ldGi------------ 579 (891)
|++. ++.+|+++|++++.+.+ ..++++. ..|.+. |.++ +|.+
T Consensus 135 ~~~~~~~~~~~d~~~l~~~~~~~~----~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 210 (380)
T PRK06225 135 PIYSEECNYKLTPELVKENMDENT----RLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAA 210 (380)
T ss_pred ccccccCCccCCHHHHHhhcCCCc----eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchh
Confidence 9742 36899999999887532 1222232 245543 3221 1110
Q ss_pred --C-CccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH
Q psy852 580 --E-YADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG 655 (891)
Q Consensus 580 --~-~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG 655 (891)
. ...-...+++|+++.| .-+|+++.++. .+ +.+.. +.. ..++. +. .........|+..
T Consensus 211 ~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~-l~-~~~~~---~~~---------~~~~~--~~-~~~~~a~~~l~~~- 272 (380)
T PRK06225 211 EYAPEHTVTSYSFSKIFGMAGLRIGAVVATPD-LI-EVVKS---IVI---------NDLGT--NV-IAQEAAIAGLKVK- 272 (380)
T ss_pred hcCCCCEEEEeechhhcCCccceeEEEecCHH-HH-HHHHH---HHh---------cccCC--CH-HHHHHHHHHHhcc-
Confidence 1 1122344778999644 34799887543 22 22211 000 00111 11 1111111122211
Q ss_pred HhhH-HHHHHHHHHHHHHHHHHhccCCCcEEe-CCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc---
Q psy852 656 LSGL-QKYIRRHCELAKLFEGKVRRDPRFEIS-NDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ--- 730 (891)
Q Consensus 656 ~~G~-~~~i~~~~~lA~~L~~~L~~~~~~eil-~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~--- 730 (891)
..+ ++..+...++.+.+.+.|++++++.+. .++..+.+.+.+.+. +....++.+.|.+.|+.+..+...
T Consensus 273 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~l~~~l~~~gi~v~~g~~~~~~ 346 (380)
T PRK06225 273 -DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA-----GIDPEDLVEYLLERKIFVRQGTYTSKR 346 (380)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccc-----cCCHHHHHHHHHHCCEEEcCCcccCcC
Confidence 122 222233345566777888877665442 344556777777542 123567888888889765443211
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+...+ +++.. ++++++++++.|+++.+
T Consensus 347 ~~~~~iR~s~~~--~~e~l~~~~~~l~~~~~ 375 (380)
T PRK06225 347 FGDRYIRVSFSI--PREQVEVFCEEFPDVVE 375 (380)
T ss_pred CCCceEEEEeCC--CHHHHHHHHHHHHHHHH
Confidence 123355 87753 78999999999998874
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00037 Score=79.63 Aligned_cols=171 Identities=15% Similarity=0.161 Sum_probs=113.5
Q ss_pred ccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCc--cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q psy852 10 HQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFS--WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNAT 87 (891)
Q Consensus 10 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~--~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~ 87 (891)
+.+++|.+-.|+|.-..+....++...+-....+..+.. .-.++.-.+||+ .||+++|.+..-.
T Consensus 39 ~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~----~lA~f~g~e~al~---------- 104 (388)
T COG0156 39 RKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEE----ELADFLGAEAALL---------- 104 (388)
T ss_pred ceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHH----HHHHHhCCCcEEE----------
Confidence 346788888899886554433333333332223322222 233556677887 5667777775421
Q ss_pred CCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEE
Q psy852 88 TPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLK 167 (891)
Q Consensus 88 tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~ 167 (891)
.++|..+|...+-.+.. ++.+|+.=+..|.|+..++++.+.+++
T Consensus 105 ---------------------f~SGy~AN~~~i~~l~~---------------~~dli~~D~lnHASiidG~rls~a~~~ 148 (388)
T COG0156 105 ---------------------FSSGFVANLGLLSALLK---------------KGDLIFSDELNHASIIDGIRLSRAEVR 148 (388)
T ss_pred ---------------------EcccchhHHHHHHHhcC---------------CCcEEEEechhhhhHHHHHHhCCCcEE
Confidence 13444333322222211 233466667899999999998877666
Q ss_pred EEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 168 ILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 168 ~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
.-+ .-|+++||+.|++..+++..+.+|+.-..=+..|.+=||.+|++++++|+.++-||=|+|
T Consensus 149 ~f~-----HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa 211 (388)
T COG0156 149 RFK-----HNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHA 211 (388)
T ss_pred Eec-----CCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEcccc
Confidence 654 268899999999865444356788888888899999999999999999999999999884
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00043 Score=80.71 Aligned_cols=216 Identities=11% Similarity=0.117 Sum_probs=122.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|++++..++.+. .+ +.-.|+++...|.+...... -.|++++.++++ |+
T Consensus 84 ~~sSGt~Al~~al~~l----l~---------------~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~ 139 (433)
T PRK08134 84 ATASGQAALHLAIATL----MG---------------AGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DI 139 (433)
T ss_pred EeCCHHHHHHHHHHHH----hC---------------CCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CH
Confidence 5778899998887653 11 11248888888877655542 258888888875 89
Q ss_pred HHHHHHHHhhhhcCCccEEEEecCCcc----c--------hhhh-----hcCC-----------CCccEEEEcCcccCCc
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTLGTT----S--------CYRK-----SQGI-----------EYADSFNVNVNKWLLT 595 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~VvataGTT----~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~ 595 (891)
++|+++|++.++ ++++.+.|.. . |+++ +|+. -++|.+.+|+|||++.
T Consensus 140 ~~l~~~i~~~Tk-----lV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g 214 (433)
T PRK08134 140 DGWRAAIRPNTR-----LLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGG 214 (433)
T ss_pred HHHHHhcCCCCe-----EEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCC
Confidence 999999987532 2222233332 2 3332 3432 2589999999999987
Q ss_pred ccc-cEEEEEeCCccc-hh--hhc-cCCCccccC-C--CCCccccCC--------cccccccccchHHHHHHHHHHHhhH
Q psy852 596 AFD-SSCLWVADRYKL-TS--ALV-VDPLYLQHG-H--EGAIDYRHW--------GIPLSRRFRSLKLWFVIRTYGLSGL 659 (891)
Q Consensus 596 P~g-~G~llvR~~~~L-~~--~l~-~~~~Yl~~~-~--e~~~~~~~~--------ti~~SRr~~aL~lW~~L~~lG~~G~ 659 (891)
|-+ .|.+++...... .. .+. ..+.+.... - ........+ ....+-.......|..+ .|.+.+
T Consensus 215 ~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~--~gL~tl 292 (433)
T PRK08134 215 HGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLL--QGIETL 292 (433)
T ss_pred CCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHh--cCCCcH
Confidence 753 566666432211 00 000 000000000 0 000000000 00001112334555444 477889
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCC------C------------ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISND------V------------RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~------~------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
..++++..++|.++.+.|+++|.++-+.- | -.++++|.+++. .....++++.|.-
T Consensus 293 ~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~-----~~~~~~f~~~l~l 365 (433)
T PRK08134 293 PLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGG-----RAAGRKFIESLKL 365 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCC-----HHHHHHHHHhCCc
Confidence 99999999999999999999888753321 1 136999999642 1233455555543
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00021 Score=81.82 Aligned_cols=245 Identities=10% Similarity=0.078 Sum_probs=141.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +++|+++++..++.+.-. +.-.|++.+-+|.+....+...|.+++.+|+|++ +.
T Consensus 95 ~i~--~t~G~~~al~~~~~~l~~-------------------~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 153 (391)
T PRK08361 95 NVI--VTAGAYEATYLAFESLLE-------------------EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQ 153 (391)
T ss_pred cEE--EeCChHHHHHHHHHHhcC-------------------CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCC
Confidence 555 678889998876654310 1124777777888888888888999999998764 57
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------CC---------CCcc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------GI---------EYAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------Gi---------~~aD 583 (891)
+|+++|++.+++.++ .++++ +..|.+. |.++ +| +- ...+
T Consensus 154 ~d~~~l~~~i~~~~~----~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (391)
T PRK08361 154 PDPDELLELITKRTR----MIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNT 229 (391)
T ss_pred CCHHHHHHhcccccE----EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCE
Confidence 999999999876321 22222 2345543 3221 11 10 1124
Q ss_pred EEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH----h
Q psy852 584 SFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL----S 657 (891)
Q Consensus 584 SIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~----~ 657 (891)
-+..+.+|.++.| | +|+++..+ +.+....... .+. .++. ..+.+..+...+.. .
T Consensus 230 i~~~s~SK~~~~~-GlRiG~~~~~~-~~~~~~~~~~-~~~-----------~~~~------~~~~q~~~~~~l~~~~~~~ 289 (391)
T PRK08361 230 ILANSFSKTFAMT-GWRLGFVIAPE-QVIKDMIKLH-AYI-----------IGNV------ASFVQIAGIEALRSKESWK 289 (391)
T ss_pred EEEecCchhcCCc-HhhhhhhccCH-HHHHHHHHHH-hhh-----------ccCC------ChHHHHHHHHHhcCCcccH
Confidence 4667889988766 5 78887743 2222211110 010 0001 11233333333321 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCe
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQND 734 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~ 734 (891)
.+++..+...+..+.+.+.|++.+++++..+.....++.++++. +....++.+.|. +.|+.+..+... .+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~-----~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~ 364 (391)
T PRK08361 290 AVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDET-----GMSSEDFAEWLLEKARVVVIPGTAFGKAGEG 364 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCC-----CCCHHHHHHHHHHhCCEEEcCchhhCCCCCC
Confidence 35555666677788889999888787765543333455566432 113456777775 468875544332 2345
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+ ++++. ++++++..++.|++.+
T Consensus 365 ~iRi~~~~--~~~~l~~al~~l~~~l 388 (391)
T PRK08361 365 YIRISYAT--SKEKLIEAMERMEKAL 388 (391)
T ss_pred EEEEEecC--CHHHHHHHHHHHHHHH
Confidence 66 88763 5677888887777654
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00021 Score=81.25 Aligned_cols=258 Identities=14% Similarity=0.097 Sum_probs=150.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CCCCcCHHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATL 546 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~G~mD~~~L 546 (891)
.+++||.|+.++|.+..- .+.-.|+++...-.+...+....|.+++.+++| +++.||+++|
T Consensus 45 ~~~sgt~Al~~al~~l~~------------------~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~ 106 (363)
T PF01041_consen 45 AVSSGTSALHLALRALGL------------------GPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEAL 106 (363)
T ss_dssp EESSHHHHHHHHHHHTTG------------------GTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHH
T ss_pred EeCChhHHHHHHHHhcCC------------------CcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHH
Confidence 456788888888877321 123368999999999999999999999999998 7899999999
Q ss_pred HHHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcCC---CCccEEEEcCc--ccCCcccc
Q psy852 547 RQVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQGI---EYADSFNVNVN--KWLLTAFD 598 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldGi---~~aDSIs~d~H--K~L~~P~g 598 (891)
+++|.+.+ ..++++-..|... |.++ .+|- ...|.-.||.| |.+.+.-
T Consensus 107 ~~~i~~~t----~ai~~~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~i~~ge- 181 (363)
T PF01041_consen 107 EKAITPKT----KAILVVHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKIITTGE- 181 (363)
T ss_dssp HHHHHTTE----EEEEEE-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSSS-SSS-
T ss_pred HHHhccCc----cEEEEecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCCCCcCCC-
Confidence 99999864 2455666677765 4331 1221 23466666655 7773333
Q ss_pred cEEEEEeCCccchhhhccCCCccccCCCCCccccC-CcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy852 599 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH-WGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKV 677 (891)
Q Consensus 599 ~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~-~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L 677 (891)
-|++++++++.....-..............+.... .+. .++--.+=+++-..-.+.+.+.+++..++++++.+.|
T Consensus 182 GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~----n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L 257 (363)
T PF01041_consen 182 GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGY----NFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREAL 257 (363)
T ss_dssp -EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS------B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCc----ccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 37777777654333221111111100000000000 111 1221122233344456778899999999999999999
Q ss_pred ccCCCcEEeCCCc-e-----eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec--c------ccC-----------
Q psy852 678 RRDPRFEISNDVR-L-----GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA--S------QEQ----------- 732 (891)
Q Consensus 678 ~~~~~~eil~~~~-~-----~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s--~------~~g----------- 732 (891)
..++++..+..+. . ....+++.+.. ......+.+.|.+.|+-..... . ...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~----~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ 333 (363)
T PF01041_consen 258 AGIPGIKPPPIPDGAERSSYYRFPIRLPDEA----LADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPN 333 (363)
T ss_dssp TTGTTEEEEGCGTTTEEBCESSEEEEETCCG----CSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHH
T ss_pred hcCCCcccccccccccccccccccccccccc----cchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHH
Confidence 9999987654322 1 23344554320 0235688999999998632211 0 001
Q ss_pred -----CeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 733 -----NDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 733 -----~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
...+ +-+++..+++|+++++++|+
T Consensus 334 ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 334 AERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp HHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 0145 55778899999999998875
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0072 Score=70.91 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=68.8
Q ss_pred CeEEEecCCCChHHHHHHHHc----CCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHH
Q psy852 142 KLMAYCSKEAHSCVEKAAMMA----FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEI 217 (891)
Q Consensus 142 ~~~v~~S~~~H~Sv~kaa~~~----~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I 217 (891)
..+|+.=...|.|+.-++++. +.++...+ .-|+++|++.|+....+ ..+|++-..-+..|.+=|+.+|
T Consensus 200 ~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~-----HND~~~Le~~L~~~~~~---~~~Vv~EgV~SmdGdiapL~eL 271 (476)
T PLN02955 200 KVAIFSDALNHASIIDGVRLAERQGNVEVFVYR-----HCDMYHLNSLLSSCKMK---RKVVVTDSLFSMDGDFAPMEEL 271 (476)
T ss_pred CcEEEEeccchHHHHHHHHhccccCCceEEEeC-----CCCHHHHHHHHHhCCCC---ceEEEEeCCCCCCCCcCCHHHH
Confidence 445777788999999999775 34555444 34889999999775422 3466666667888999999999
Q ss_pred HHHHHHcCCceeeeccccCCc
Q psy852 218 GPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~~ 238 (891)
.++|++||..+.||=|+|++.
T Consensus 272 ~~L~~~~ga~LiVDEAH~~Gv 292 (476)
T PLN02955 272 SQLRKKYGFLLVIDDAHGTFV 292 (476)
T ss_pred HHHHHHcCcEEEEcccccCce
Confidence 999999999999999996543
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00053 Score=77.11 Aligned_cols=170 Identities=17% Similarity=0.195 Sum_probs=110.6
Q ss_pred CHHHHHHHHHH-HhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q psy852 29 SYPSVLADMLS-DAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQ 107 (891)
Q Consensus 29 ~~~~~~~~~l~-~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~ 107 (891)
.++.++..+.. .....-...|.......+++..+.+++.+--|++.+... . .
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~------~---------------------i 71 (363)
T PF00155_consen 19 PPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEA------N---------------------I 71 (363)
T ss_dssp HHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGE------G---------------------E
T ss_pred chHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccce------E---------------------E
Confidence 44555555554 222222223334445678888888888866666543210 0 1
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHH
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQV 185 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~ 185 (891)
.+++|+.+....+..+.+.. +.-.|++..-.|......+...+..++.++.+ +++.+|+++|++.
T Consensus 72 ~~~~G~~~~~~~~~~~~~~~-------------~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 138 (363)
T PF00155_consen 72 LVTSGAQAALFLLLRLLKIN-------------PGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEA 138 (363)
T ss_dssp EEESHHHHHHHHHHHHHHSS-------------TTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHH
T ss_pred EEecccccchhhhhhccccc-------------ccccceecCCccccccccccccCceeeeccccccccccccccccccc
Confidence 24566544333333333211 12247777888999999998888889998865 7889999999999
Q ss_pred HHhhhhcCCcceEEEeecccCccccccCHHHHHHH---HHHcCCceeeeccccCCc
Q psy852 186 MQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV---AKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 186 l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i---~~~~~~~lHvDaA~GG~~ 238 (891)
+++...++..+.+|+.+-.+|.||.+=+.+++.++ |+++++++-+|-+|+++.
T Consensus 139 l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~ 194 (363)
T PF00155_consen 139 LDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLI 194 (363)
T ss_dssp HHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGB
T ss_pred cccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccc
Confidence 99875554335577777888999988666555554 999999999999996544
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.2e-05 Score=83.80 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=70.1
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|+++.-++......+...|.+++.++.+.++.+|+++|++.+... +.+|+++..+|.+|.+-|++++.++|+++
T Consensus 114 vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~ 187 (361)
T PRK00950 114 VIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEK------TKVIFLCTPNNPTGNLIPEEDIRKILEST 187 (361)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccC------CCEEEEeCCCCCCCCCcCHHHHHHHHHHC
Confidence 555554444445555667889999998888899999999988543 33666678899999999999999999999
Q ss_pred CCceeeeccccCC
Q psy852 225 DVWLHVDGAYAGS 237 (891)
Q Consensus 225 ~~~lHvDaA~GG~ 237 (891)
++++++|.+|+++
T Consensus 188 ~~~li~De~y~~~ 200 (361)
T PRK00950 188 DALVFVDEAYVEF 200 (361)
T ss_pred CcEEEEECchhhh
Confidence 9999999999653
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=85.78 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=68.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|+++.-..+.....+.+.+.+++.++++ .++.+|+++|++.+++.+ .+++++..+|.||.+-| +++|++
T Consensus 144 Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~P~NPtG~v~~~~~l~~i~~ 217 (430)
T PLN00145 144 ILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENT------VAMVIINPNNPCGSVYSYEHLAKIAE 217 (430)
T ss_pred EEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCc------eEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 6666556665556666677788888764 457899999998876543 46777778999999998 788889
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++|++|++|.+|+.+
T Consensus 218 ~a~~~~i~ii~De~Y~~~ 235 (430)
T PLN00145 218 TARKLGILVIADEVYDHL 235 (430)
T ss_pred HHHHcCCEEEEeccchhh
Confidence 999999999999999653
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00098 Score=76.08 Aligned_cols=250 Identities=9% Similarity=0.012 Sum_probs=143.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+++ +++|+++++..++.+.-. +.-.|+++.-.|.....++...|.+++.+|.++ .+.
T Consensus 93 ~i~--~~~g~~~a~~~~~~~~~~-------------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 151 (393)
T PRK05764 93 QVI--VTTGAKQALYNAFMALLD-------------------PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFK 151 (393)
T ss_pred HEE--EeCCcHHHHHHHHHHhcC-------------------CCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCc
Confidence 455 678888888776655311 112477777888888888888899999999863 467
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------CC------------C
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------GI------------E 580 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------Gi------------~ 580 (891)
+|+++|++++++.. ..++++ +..|.+. |.++ +| +- .
T Consensus 152 ~d~~~l~~~l~~~~----~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 227 (393)
T PRK05764 152 LTVEQLEAAITPKT----KALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELR 227 (393)
T ss_pred CCHHHHHHhhCccc----eEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCc
Confidence 99999999986432 122222 2245542 3221 11 10 0
Q ss_pred CccEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--Hh
Q psy852 581 YADSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LS 657 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~ 657 (891)
.-+-...+..|.++.|- -+|+++. +++.+.........+ .-....+.+|.+.+.+. .+
T Consensus 228 ~~~i~~~s~SK~~~~~G~RiG~i~~-~~~~~~~~~~~~~~~------------------~~~~~~~~q~~~~~~l~~~~~ 288 (393)
T PRK05764 228 DRTITVNGFSKAYAMTGWRLGYAAG-PKELIKAMSKLQSHS------------------TSNPTSIAQYAAVAALNGPQD 288 (393)
T ss_pred CCEEEEecCcccccCccceeEEEec-CHHHHHHHHHHHhhc------------------ccCCChHHHHHHHHHHcCChH
Confidence 11233445788887662 2677663 332222111110000 00112345555555553 34
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccccCCeEE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g~~~l 736 (891)
.+.+..+...++++++.+.|++++++.+..+.....+++++.+... .......++.+.|. +.|+.+..+........+
T Consensus 289 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~v 367 (393)
T PRK05764 289 EVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLG-KSITDSLEFAEALLEEAGVAVVPGIAFGAPGYV 367 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccc-cccCCHHHHHHHHHHhCCEEEccccccCCCCEE
Confidence 4455556667788889999998878887654333355556643210 00012356777765 568876554433334456
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++.. ++++++++++.|.+++
T Consensus 368 Ris~~~--~~~~~~~~i~~l~~~~ 389 (393)
T PRK05764 368 RLSYAT--SLEDLEEGLERIERFL 389 (393)
T ss_pred EEEecC--CHHHHHHHHHHHHHHH
Confidence 88764 6899999999998775
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00036 Score=81.18 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=63.9
Q ss_pred EEEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++.....+.... +...|.++..++. .+|+++++++|++.++ +|.+...+|.++.+-|+++|++
T Consensus 102 ~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~----~~d~~~l~~~I~~~Tk------~I~~e~pgnP~~~v~Di~~I~~ 171 (432)
T PRK06702 102 HLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP----NLTADEIVALANDKTK------LVYAESLGNPAMNVLNFKEFSD 171 (432)
T ss_pred EEEECCCchHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHhCCcCCe------EEEEEcCCCccccccCHHHHHH
Confidence 378887777655444 3345678888753 4799999999987542 5555667899999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++-+|.+|+
T Consensus 172 iA~~~gi~livD~T~~ 187 (432)
T PRK06702 172 AAKELEVPFIVDNTLA 187 (432)
T ss_pred HHHHcCCEEEEECCCC
Confidence 9999999999999994
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=76.15 Aligned_cols=146 Identities=10% Similarity=-0.011 Sum_probs=88.9
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|-+++ .|+++..+++|+++.+++ +.+.+.. . . ...+.. +-+........+|+.+..+ +
T Consensus 245 pDi~t~--sK~l~~G~~ig~~~~~~~--~~~~~~~--~--~---------~~~t~~-~~~~~~aaa~a~l~~~~~~---~ 303 (398)
T PRK03244 245 PDVVTL--AKGLGGGLPIGACLAFGP--AADLLTP--G--L---------HGSTFG-GNPVACAAALAVLDTIASE---G 303 (398)
T ss_pred CCEEEE--chhhhCCcccEEEEEcHH--HHhhccC--C--C---------CcCCCC-CCHHHHHHHHHHHHHHHhc---c
Confidence 466666 699997788999998765 2222210 0 0 011111 1122223333444444433 3
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EE
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FE 738 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~s 738 (891)
..++..++.++|.+.|++.. +.++.. ...+++.+.+.+ .....+.++|.++|++.. +. +...+ ++
T Consensus 304 ~~~~~~~~~~~l~~~L~~~~-~~~~~~v~g~g~~~~i~~~~-------~~~~~~~~~l~~~Gv~~~-~~---~~~~iR~~ 371 (398)
T PRK03244 304 LLENAERLGEQLRAGIEALG-HPLVDHVRGRGLLLGIVLTA-------PVAKAVEAAAREAGFLVN-AV---APDVIRLA 371 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCceeeEeeccEEEEEEEec-------cHHHHHHHHHHHCCeEEe-ec---CCCEEEEE
Confidence 45666777888999998752 222211 134566777642 145678899999998743 21 23567 99
Q ss_pred ecCCCCHHHHHHHHHHHHHHHH
Q psy852 739 LQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ei~~ 760 (891)
++...|++||+++++.|++++.
T Consensus 372 p~~~~t~~~i~~~~~~l~~~l~ 393 (398)
T PRK03244 372 PPLIITDAQVDAFVAALPAILD 393 (398)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH
Confidence 9888899999999999998874
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=83.16 Aligned_cols=83 Identities=6% Similarity=0.061 Sum_probs=69.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.|++|++ +.+|+++|++.+++.+ -+|+. ++.+|..-|+.+|.++|+
T Consensus 73 ~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~t------k~Iip---~~~~G~~~d~~~I~~la~ 143 (376)
T TIGR02379 73 EVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHRT------KAIVP---VHYAGVACDMDTIMALAN 143 (376)
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCc------eEEEE---eCCCCCccCHHHHHHHHH
Confidence 4888889999998888777889999999976 5799999999887542 34543 456799999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|++|..|+|++
T Consensus 144 ~~~i~vIeDaa~~ 156 (376)
T TIGR02379 144 KHQLFVIEDAAQG 156 (376)
T ss_pred HCCCEEEEECccc
Confidence 9999999999983
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.2e-05 Score=100.42 Aligned_cols=292 Identities=12% Similarity=0.004 Sum_probs=183.5
Q ss_pred HHHHHHHHH-HHHHhhccCC-ccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH
Q psy852 442 IRRHCELAK-LFEGKVRRDP-RFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 519 (891)
Q Consensus 442 i~~~lelAr-~l~~~L~~~~-~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv 519 (891)
....++.+| .+++.|+..+ .++|+ +|+|+|+++........ + .+.-.|+++...|.|+
T Consensus 76 ~~~~~e~aR~~ia~~lga~~~~~~Vv--FtsnaT~alnlva~~l~--~----------------~~gd~Iv~t~~eH~sv 135 (805)
T PLN02724 76 SSDTIESARQQVLEYFNAPPSDYACV--FTSGATAALKLVGETFP--W----------------SSESHFCYTLENHNSV 135 (805)
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEE--EeCChHHHHHHHHHHCC--C----------------CCCCeEEEeeccccch
Confidence 444566665 7777777654 45677 88999999876643321 0 0112577799999988
Q ss_pred HHHHHH---cCceEEEecCC--------CCCCcCH--HHHHHHHHh----h----hhcCCc-cEEEEecCCccc------
Q psy852 520 EKAAMM---AFVRLKILEPD--------DKNSLRG--ATLRQVMQQ----D----ETMGYI-PFFVSTTLGTTS------ 571 (891)
Q Consensus 520 ~Kaa~l---~gv~v~~Vp~d--------~~G~mD~--~~Le~aI~~----d----~~~g~i-p~~VvataGTT~------ 571 (891)
.-...+ .|++++.+|++ ++|.+++ ++|++.+.+ . ....++ ..++.+..|+..
T Consensus 136 l~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~ 215 (805)
T PLN02724 136 LGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVK 215 (805)
T ss_pred HHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHH
Confidence 744333 47889999886 5566655 667776531 0 000122 223345566655
Q ss_pred -hhh--------------hhcCC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccC
Q psy852 572 -CYR--------------KSQGI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHG 624 (891)
Q Consensus 572 -c~~--------------~ldGi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~ 624 (891)
|.+ ++|+. -.+|.+++++|||+++|.|+|+||+|++. +. .+ .+.|...+
T Consensus 216 ~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~-~~-~l--~p~~~GGg 291 (805)
T PLN02724 216 LIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDA-AK-LL--KKKYFGGG 291 (805)
T ss_pred HHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEEEEehhh-hh-hh--cCCccCCC
Confidence 121 13432 24799999999999999999999999752 11 11 22222221
Q ss_pred CC------CCc----cccCCcccc-cccc-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC------CcEEe
Q psy852 625 HE------GAI----DYRHWGIPL-SRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP------RFEIS 686 (891)
Q Consensus 625 ~e------~~~----~~~~~ti~~-SRr~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~------~~eil 686 (891)
.- ..+ ......++. +..+ ..+.+-.+++.+-..|++++.++...|+++|.+.|++++ +++++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iy 371 (805)
T PLN02724 292 TVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLY 371 (805)
T ss_pred ceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEc
Confidence 10 000 000011221 2222 235677788888888999999999999999999999886 58888
Q ss_pred CCC--------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc---------------------------
Q psy852 687 NDV--------RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--------------------------- 731 (891)
Q Consensus 687 ~~~--------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--------------------------- 731 (891)
++. ..++|+|.+.+.....+. ...+...+...|+...+++.+.
T Consensus 372 g~~~~~~~~~~r~~ivsFnv~~~~~~~v~--~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~ 449 (805)
T PLN02724 372 GNHTFKLEFHIQGPIVTFNLKRADGSWVG--HREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWD 449 (805)
T ss_pred CCCCCCCCcccccCEEEEEEEcCCCCEeC--HHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCc
Confidence 643 468999999875322211 1122333355788877766543
Q ss_pred ------C--CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 ------Q--NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 ------g--~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ .+++ +|+++++|.+|||+++++|++.-
T Consensus 450 ~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 450 DQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred hhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 1 2567 99999999999999999999853
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00043 Score=79.32 Aligned_cols=242 Identities=12% Similarity=0.122 Sum_probs=133.1
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEec--ccchHHHHHHHHH-------cCceEEEecCC-CCC
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCS--KEAHSCVEKAAMM-------AFVRLKILEPD-DKN 539 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S--~~aH~Sv~Kaa~l-------~gv~v~~Vp~d-~~G 539 (891)
.+|+.||+.++.+.-+ ++..++-.+ .-.|.|....... ...+....++| +++
T Consensus 93 ~SGs~An~av~~aLl~------------------pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~ 154 (399)
T PF00464_consen 93 HSGSQANLAVYMALLK------------------PGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTG 154 (399)
T ss_dssp SSHHHHHHHHHHHHT-------------------TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTS
T ss_pred CCchHHHHHHHHHHHh------------------hcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCC
Confidence 5678899887776321 112223222 3346554333322 23477888888 679
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------hhh----------hhcC----------CCCccEEEEc
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------CYR----------KSQG----------IEYADSFNVN 588 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c~~----------~ldG----------i~~aDSIs~d 588 (891)
.+|.+.+++.+++. .|-+|+...-... |.+ |+.| +++||-++.+
T Consensus 155 ~ID~d~l~~~a~~~-----kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~s 229 (399)
T PF00464_consen 155 LIDYDELEKLAKEH-----KPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGS 229 (399)
T ss_dssp SB-HHHHHHHHHHH-------SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEE
T ss_pred eECHHHHHHHHhhc-----CCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEee
Confidence 99999999999874 2444443332222 222 2222 5889999999
Q ss_pred CcccCCcccccEEEEEeCCc------------cchhhhccCCCccccCCCCCccccCCcccccccc-cchHHHHHHHHHH
Q psy852 589 VNKWLLTAFDSSCLWVADRY------------KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYG 655 (891)
Q Consensus 589 ~HK~L~~P~g~G~llvR~~~------------~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~-~aL~lW~~L~~lG 655 (891)
-||.|-+|-| |++++++.. .+.+.+.. -+ -.+.+++=.. +...+..+++...
T Consensus 230 ThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~l~~~I~~---av-----------fP~~qg~~h~~~iaalAval~ea~ 294 (399)
T PF00464_consen 230 THKTLRGPRG-GIILTNKGSKNVDKKGKEIDEELAEKIDS---AV-----------FPGLQGGPHMHRIAALAVALKEAL 294 (399)
T ss_dssp SSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHHHHHHH---HH-----------TTTT-SS--HHHHHHHHHHHHHHT
T ss_pred ccccccccCc-eEEEEcCCccccCCcccccHHHHHHHhcc---cc-----------CCCcccCcchhHHHHHHHHHhccc
Confidence 9999999986 788887221 11111100 00 0011111111 1234455666666
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-c-cC
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS-Q-EQ 732 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~-~-~g 732 (891)
...+++..++.+++|+.|++.|.+ .+|.++. -.+.++|.....+. +.......+.|.+-|+.+-.-+- . ..
T Consensus 295 ~~~fk~Ya~qVv~NAk~La~~L~~-~G~~v~~ggTd~H~vlvd~~~~-----~~~g~~a~~~Le~~gI~vnkn~iP~d~~ 368 (399)
T PF00464_consen 295 SPEFKEYAKQVVKNAKALAEALQE-RGFKVVTGGTDNHQVLVDLRSF-----GIDGKEAEKALEEAGIIVNKNTIPGDRS 368 (399)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH-TT-EEGGGS-SSSEEEEEGGGG-----TS-HHHHHHHHHHTTEE-EEE--TTTST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhh-CCcEEEECCCCCCeEEEEeccc-----ccchHHHHHHHHhcCeeecccccCCCCC
Confidence 667889999999999999999998 4899974 35678888887643 22345666778888987422111 1 11
Q ss_pred ---CeEE-EE----ecCCCCHHHHHHHHHHH
Q psy852 733 ---NDEV-FE----LQERKRKDDLAYKRSFF 755 (891)
Q Consensus 733 ---~~~l-~s----v~~~tT~edId~li~~L 755 (891)
...+ +. +.....++|+.++.+.|
T Consensus 369 ~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 369 PFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp TTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred CCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 1234 55 34567888888776543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00014 Score=83.76 Aligned_cols=88 Identities=11% Similarity=0.164 Sum_probs=69.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|+++.-++......+...+.+++.++++ +++.+|++++++.+.+. +.+|+++..+|.+|.+- ++++|++
T Consensus 123 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~~ 196 (403)
T TIGR01265 123 ILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEK------TVAIVVINPSNPCGSVFSRDHLQKIAE 196 (403)
T ss_pred EEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcC------ccEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 6666667777777776677788888875 35689999999887653 24677778899999995 4899999
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|+++++|.+|+.+.
T Consensus 197 ~a~~~~~~ii~De~y~~~~ 215 (403)
T TIGR01265 197 VARKLGIPIIADEIYGHMV 215 (403)
T ss_pred HHHHCCCEEEEEccccccc
Confidence 9999999999999996543
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=83.53 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=70.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH---HHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA---EIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~ 218 (891)
.|+++.-+|.+....+...+.+++.|+++++ +.+|+++|++.+++.. .+++.+..+|.||.+-+.+ +|+
T Consensus 118 ~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~p~NPtG~~~~~~~~~~l~ 191 (387)
T PRK08960 118 HWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADT------VGALVASPANPTGTLLSRDELAALS 191 (387)
T ss_pred EEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccc------eEEEEECCCCCCCcCcCHHHHHHHH
Confidence 4778888998888888776778999998765 4799999999876542 3566677899999997754 666
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++|+++.+|.+|..+
T Consensus 192 ~~~~~~~~~li~De~Y~~~ 210 (387)
T PRK08960 192 QALRARGGHLVVDEIYHGL 210 (387)
T ss_pred HHHHHcCCEEEEEcccccc
Confidence 6789999999999999553
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00091 Score=76.93 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=62.2
Q ss_pred EEEecCCCChHHHHHH--HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA--MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa--~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
+|+.....|.|+.... ...+.+++.+|.+ |+++|++.+++. +.+++++-+++.+|.+.|+++|.++|
T Consensus 137 vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~~~~~------~~~~vl~~p~~~~G~~~~~~~i~~l~ 205 (402)
T PRK07505 137 HMVFDKNAHASLNILKGICADETEVETIDHN-----DLDALEDICKTN------KTVAYVADGVYSMGGIAPVKELLRLQ 205 (402)
T ss_pred EEEEchhhhHhHHhhhhhhhcCCeEEEeCCC-----CHHHHHHHHhcC------CCEEEEEecccccCCcCCHHHHHHHH
Confidence 5666778999985422 2234577777753 889999888643 23666677888999999999999999
Q ss_pred HHcCCceeeeccc
Q psy852 222 KEFDVWLHVDGAY 234 (891)
Q Consensus 222 ~~~~~~lHvDaA~ 234 (891)
+++++++++|.++
T Consensus 206 ~~~~~~li~DEa~ 218 (402)
T PRK07505 206 EKYGLFLYIDDAH 218 (402)
T ss_pred HHcCCEEEEECcc
Confidence 9999999999998
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.5e-05 Score=86.57 Aligned_cols=276 Identities=10% Similarity=0.004 Sum_probs=173.5
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHHHHc
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAMMA 526 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa~l~ 526 (891)
.+.+++.+...+.-.++ +++++++++..++.+.- . +.-.|+++...|++ +...+...
T Consensus 38 ~~~la~~~g~~~~~~~~--~~~~~t~al~~~~~~~~----~---------------~g~~vl~~~~~~~~~~~~~~~~~~ 96 (356)
T cd06451 38 LEGLRYVFQTENGLTFL--LSGSGTGAMEAALSNLL----E---------------PGDKVLVGVNGVFGDRWADMAERY 96 (356)
T ss_pred HHHHHHHhcCCCCCEEE--EecCcHHHHHHHHHHhC----C---------------CCCEEEEecCCchhHHHHHHHHHh
Confidence 34555555543333344 56677999877775431 1 11236666677876 34556678
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHh-hhhcCCccEEEE---ecCCccc--------hhhh-----hcCC----------
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQ-DETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI---------- 579 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~-d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi---------- 579 (891)
|.+++.+|+++++.+|+++|++.+++ +. ..++++ +..|+.. |+++ +|+.
T Consensus 97 g~~~~~v~~~~~~~~~~~~l~~~i~~~~~----~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~ 172 (356)
T cd06451 97 GADVDVVEKPWGEAVSPEEIAEALEQHDI----KAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRM 172 (356)
T ss_pred CCCeEEeecCCCCCCCHHHHHHHHhccCC----CEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccc
Confidence 89999999988899999999999975 22 122222 2245543 3331 2221
Q ss_pred --CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc--cCC-CccccCCCCCccccCCc-cc-ccccc-cchHHHHHH
Q psy852 580 --EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV--VDP-LYLQHGHEGAIDYRHWG-IP-LSRRF-RSLKLWFVI 651 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~--~~~-~Yl~~~~e~~~~~~~~t-i~-~SRr~-~aL~lW~~L 651 (891)
..+|.+..++|||+++|.|+|+++++++ .+..... ... .|...... ......+ .. ++-.. ....++.++
T Consensus 173 ~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~t~~~~~~~a~~aal 249 (356)
T cd06451 173 DEWGVDVAYTGSQKALGAPPGLGPIAFSER-ALERIKKKTKPKGFYFDLLLL--LKYWGEGYSYPHTPPVNLLYALREAL 249 (356)
T ss_pred cccCccEEEecCchhccCCCCcceeEECHH-HHHHHHhcCCCCceeecHHHH--HhhhcccCCCCCCChHHHHHHHHHHH
Confidence 2479999999999999999999999865 2222211 111 11110000 0000000 00 01111 124667888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc--eeEE-EEEecCCcchhhhhhHHHHHHHHHhC-CcEEEee
Q psy852 652 RTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR--LGLV-CFRLRSENNLIADQNNRKLLEDINAS-GRLHMVP 727 (891)
Q Consensus 652 ~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~--~~iV-~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~ 727 (891)
+.+...++++..++..++++++.+.|++. ++++..++. .+.+ ++++.+. .....+.+.|.+. |+....+
T Consensus 250 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~~gI~~~~g 322 (356)
T cd06451 250 DLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEG------VDGDEVVRRLMKRYNIEIAGG 322 (356)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCC------CCHHHHHHHHHHhCCEEEecc
Confidence 88888899999999999999999999987 788875432 4444 4555321 2356788899888 8875544
Q ss_pred ccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 728 s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
........+ ++++.++|++||++++++|++++
T Consensus 323 ~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 323 LGPTAGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred cccccCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 333333466 99999999999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00067 Score=76.49 Aligned_cols=247 Identities=9% Similarity=0.036 Sum_probs=137.7
Q ss_pred HHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEE
Q psy852 452 FEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLK 531 (891)
Q Consensus 452 l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~ 531 (891)
+++.+...++-+|+ +++|+++++..++.+.- + +...|++..-.+.....++...|++++
T Consensus 72 ia~~~~~~~~~~I~--~t~G~~~~i~~~~~~~~----~---------------~gd~vlv~~P~y~~~~~~~~~~g~~~~ 130 (356)
T PRK04870 72 LRAAMGVPAGADVL--LGNGSDELIQLLALACA----K---------------PGATVLAPEPGFVMYRMSAKLAGLEFV 130 (356)
T ss_pred HHHHhCcCCCCcEE--EcCCHHHHHHHHHHHhc----C---------------CCCEEEECCCCHHHHHHHHHHcCCEEE
Confidence 33444332322455 67787777766554321 0 122466777778888888889999999
Q ss_pred EecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCCCCcc------------
Q psy852 532 ILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGIEYAD------------ 583 (891)
Q Consensus 532 ~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi~~aD------------ 583 (891)
.+|.++++.+|+++|++++.... ...++++ +-.|++. +... +|.+ +.|
T Consensus 131 ~i~~~~~~~~d~~~l~~~~~~~~---~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~-y~~~~~~~~~~~~~~ 206 (356)
T PRK04870 131 GVPLTADFTLDLPAMLAAIAEHR---PALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEA-YQPFAGDSWLPRLAR 206 (356)
T ss_pred EecCCCCCCCCHHHHHHHhhcCC---CCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECC-chhhcCcchHHHHhh
Confidence 99999889999999999986521 1223333 3345554 1100 1110 001
Q ss_pred ----EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-Hh
Q psy852 584 ----SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LS 657 (891)
Q Consensus 584 ----SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~ 657 (891)
-+.-+..|+ +.| .-+|+++... +.+........ .+. ...+.++++...+. .+
T Consensus 207 ~~~vi~~~S~SK~-~~~GlRiG~~i~~~-~~i~~~~~~~~--------------~~~------~~~~~q~~a~~~l~~~~ 264 (356)
T PRK04870 207 FPNLLVMRTVSKL-GLAGLRLGYLAGHP-AWIAELDKVRP--------------PYN------VNVLTQATALFALEHVD 264 (356)
T ss_pred CCCEEEEecchhh-hhHHHhhhhhhCCH-HHHHHHHHccC--------------CCc------CCHHHHHHHHHHHhCHH
Confidence 112233442 211 1133333211 11111000000 011 11222333222221 23
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc--CCeE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--QNDE 735 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--g~~~ 735 (891)
.+++..++..+.++++.+.|++.+++.+. ++..+.+.+++. ....+.+.|.++|+.+..+.... ....
T Consensus 265 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~l~~~gI~v~~~~~f~~~~~~~ 334 (356)
T PRK04870 265 VLDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVP---------DAAAVFDGLKTRGVLVKNLSGMHPLLANC 334 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC---------CHHHHHHHHHHCCEEEEECCCCCCCCCCe
Confidence 36777778888999999999988888764 556667777764 13567888888998865443321 2345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei 758 (891)
+ ++++ +.+++++++++|+++
T Consensus 335 iRis~~---~~~~~~~l~~al~~~ 355 (356)
T PRK04870 335 LRVTVG---TPEENAQFLAALKAA 355 (356)
T ss_pred EEEeCC---CHHHHHHHHHHHHHh
Confidence 6 8776 789999999999864
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00071 Score=77.11 Aligned_cols=148 Identities=19% Similarity=0.079 Sum_probs=89.7
Q ss_pred CccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 581 YADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
.+|-+..++|||+++|-| .|+++.++++... .+..-..+. +. ....+..|..++ |..-
T Consensus 183 g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~-~l~~~~~~~-------------g~----~~~~~~a~l~~r--~l~t 242 (366)
T PRK07582 183 GADLVVASDTKALTGHSDLLLGYVAGRDPELMA-AVERWRLLA-------------GA----IPGPFEAWLAHR--SLGT 242 (366)
T ss_pred CCcEEEecccccccCCCCeeEEEEEcCcHHHHH-HHHHHHHHh-------------CC----CCCHHHHHHHHh--cccc
Confidence 479999999999999877 4777766554322 221100010 00 012344565554 4456
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeC------CC-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISN------DV-----------RLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~------~~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
+..++++..++++.+++.|+++|.++-+. .| ..++|+|.+.+ .+.+.+.|+..+
T Consensus 243 l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~---------~~~~~~~~~~l~ 313 (366)
T PRK07582 243 LGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD---------AAAAERFVAASR 313 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC---------HHHHHHHHHhCC
Confidence 77888999999999999999999876432 23 25799999952 122333333333
Q ss_pred cEEEeec------------cc---cCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 722 RLHMVPA------------SQ---EQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 722 ~~~~s~s------------~~---~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
++....+ .. -....+ +|++....++.|+.+.++|++
T Consensus 314 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 314 LVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALDA 365 (366)
T ss_pred cceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 3322100 01 112456 999988777777777777653
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0021 Score=72.16 Aligned_cols=238 Identities=11% Similarity=-0.008 Sum_probs=137.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +|+|+++++..++.+.-. +.-.|+++.-.+......+...|++++.+|.++++.+|
T Consensus 79 ~I~--it~G~~~al~~~~~~l~~-------------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d 137 (353)
T PRK05387 79 QVF--VGNGSDEVLAHAFLAFFN-------------------HDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSID 137 (353)
T ss_pred HEE--EcCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCC
Confidence 566 788999988877665311 11236666666666666677889999999998889999
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh------hc-------CC--------CCccEEEEcCc
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK------SQ-------GI--------EYADSFNVNVN 590 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~------ld-------Gi--------~~aDSIs~d~H 590 (891)
+++|++. . . -++++ +-.|.+. |... +| +- ..-.-+..++.
T Consensus 138 ~~~l~~~----~---~-~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~S 209 (353)
T PRK05387 138 VEDYLRP----N---G-GIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFS 209 (353)
T ss_pred HHHHHhc----C---C-EEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehh
Confidence 9998641 1 1 12222 2345554 1110 11 10 00124555677
Q ss_pred ccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-HhhHHHHHHHHHH
Q psy852 591 KWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LSGLQKYIRRHCE 668 (891)
Q Consensus 591 K~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~G~~~~i~~~~~ 668 (891)
|.++.| .-+|+++. +++.+ +.+....... ..++ ...+.++++...+. .+.+++..++..+
T Consensus 210 K~~~~~GlR~G~~~~-~~~~~-~~l~~~~~~~----------~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 271 (353)
T PRK05387 210 KSRSLAGLRVGFAIG-HPELI-EALNRVKNSF----------NSYP------LDRLAQAGAIAAIEDEAYFEETRAKVIA 271 (353)
T ss_pred Hhhcchhhhceeeec-CHHHH-HHHHHhhccC----------CCCC------cCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 776645 44666654 22222 1111100000 0011 11234444444443 2345666777788
Q ss_pred HHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHH
Q psy852 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDD 747 (891)
Q Consensus 669 lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~ed 747 (891)
.++++.+.|++. ++++. ++..+.+++++.+. ...++.+.|.++|+.+...........+ ++++ +.++
T Consensus 272 ~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~ 339 (353)
T PRK05387 272 TRERLVEELEAL-GFEVL-PSKANFVFARHPSH-------DAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEE 339 (353)
T ss_pred HHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCC-------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHH
Confidence 889999999887 67654 44566777776432 3567888898899875322111223456 8776 6799
Q ss_pred HHHHHHHHHHHH
Q psy852 748 LAYKRSFFVRML 759 (891)
Q Consensus 748 Id~li~~L~ei~ 759 (891)
+++++++|+++.
T Consensus 340 ~~~~~~~L~~~~ 351 (353)
T PRK05387 340 MEALVDALKEIL 351 (353)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=82.47 Aligned_cols=247 Identities=11% Similarity=0.084 Sum_probs=139.1
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++...-.++ +|+ ++.|++|++..++.+. ... ++-.|+++.-++......++..|.++
T Consensus 65 ~~a~~~g~~~~-~I~--~~~Gs~e~i~~~~~~~----~~~--------------g~~~vli~~P~y~~y~~~~~~~G~~~ 123 (351)
T PRK01688 65 NYAAYAGVKPE-QVL--VSRGADEGIELLIRAF----CEP--------------GKDAILYCPPTYGMYSVSAETIGVEI 123 (351)
T ss_pred HHHHHhCCCHH-HEE--EcCCHHHHHHHHHHHh----cCC--------------CCCEEEEcCCCHHHHHHHHHHcCCEE
Confidence 33344333333 566 6789999887766542 100 11246777778888888888899999
Q ss_pred EEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhh----hhcCC--CCc------c-
Q psy852 531 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYR----KSQGI--EYA------D- 583 (891)
Q Consensus 531 ~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~----~ldGi--~~a------D- 583 (891)
+.+|.++++.+|+++|+++++ . ...++++ +-.|+.. |.+ .+|.. +.+ +
T Consensus 124 ~~v~~~~~~~~d~~~l~~~~~-~----~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~ 198 (351)
T PRK01688 124 RTVPTLDNWQLDLPAIADNLD-G----VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGW 198 (351)
T ss_pred EEeecCCCCCCCHHHHHHhcc-C----CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHH
Confidence 999998889999999998873 2 1123333 3356654 111 01111 000 0
Q ss_pred -------EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH-
Q psy852 584 -------SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY- 654 (891)
Q Consensus 584 -------SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l- 654 (891)
-+.-+++|+++.| .-+|.++...+ .+......... +.+ + .+.+-++...+
T Consensus 199 ~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~-~i~~l~~~~~~--------------~~v--~----~~~~~~a~~~L~ 257 (351)
T PRK01688 199 LAEYPHLVILRTLSKAFALAGLRCGFTLANEE-VINLLLKVIAP--------------YPL--S----TPVADIAAQALS 257 (351)
T ss_pred HhhCCCEEEEecchHhhcCHHHHHhHHhCCHH-HHHHHHhccCC--------------CCC--C----HHHHHHHHHHHh
Confidence 0112233544422 23444443211 11110000000 111 1 11111222222
Q ss_pred --HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-c
Q psy852 655 --GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ-E 731 (891)
Q Consensus 655 --G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~-~ 731 (891)
+.+-+++.++...+.++++.+.|+++++++.+.++..+-+.+++. ..+.+.+.|.++|+.+...... .
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~---------~~~~l~~~L~~~gi~vr~~~~~~~ 328 (351)
T PRK01688 258 PQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT---------ASSAVFKSLWDQGIILRDQNKQPG 328 (351)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC---------CHHHHHHHHHHCCeEEEECCCcCC
Confidence 234456667777788899999999888876555666777777764 2367888899999876544322 1
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
....+ ++++ +.+|+++++++|+
T Consensus 329 ~~~~iRis~~---~~~e~~~l~~al~ 351 (351)
T PRK01688 329 LSNCLRITIG---TREECQRVIDALR 351 (351)
T ss_pred CCCeEEEeCC---CHHHHHHHHHhhC
Confidence 13456 8887 6799999998873
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0015 Score=75.45 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=51.8
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|++|...|+.....+. ..+.+++.++++++|..| .++ ++.|+++.-| ..|.|+++.+|++
T Consensus 156 ~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~~------~a~v~vq~Pn-~~G~~ed~~~i~~ 220 (429)
T PF02347_consen 156 KVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DDD------TAAVMVQNPN-TFGVFEDIKEIAD 220 (429)
T ss_dssp EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------STT------EEEEEEESS--TTSB--THHHHHH
T ss_pred EEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------ccC------eEEEEeecCC-CCceEeeHHHHHH
Confidence 48999999998877653 257799999999999988 222 5788888886 5799999999999
Q ss_pred HHHHcCCceee
Q psy852 220 VAKEFDVWLHV 230 (891)
Q Consensus 220 i~~~~~~~lHv 230 (891)
+++++|..+-+
T Consensus 221 ~~h~~gal~~~ 231 (429)
T PF02347_consen 221 IAHAAGALVIV 231 (429)
T ss_dssp HHHHTT-EEEE
T ss_pred HHHHcCCEEEE
Confidence 99999855433
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0004 Score=79.14 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=116.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH----HHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka----a~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|+.++..++.+... +.-.|+++...|.+.... +...|++++.++.+ |+
T Consensus 60 ~~~sG~~Ai~~~l~~l~~-------------------~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~ 115 (369)
T cd00614 60 AFSSGMAAISTVLLALLK-------------------AGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD-----DP 115 (369)
T ss_pred EEcCHHHHHHHHHHHHcC-------------------CCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC-----CH
Confidence 456778888888766411 112467777777665443 34567888888775 58
Q ss_pred HHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~P 596 (891)
++|++++++.+ ..+++.. ..|... |+++ +|+ + -.+|.+..+.+|++++|
T Consensus 116 ~~l~~~i~~~~----~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~ 191 (369)
T cd00614 116 EALEAAIKPET----KLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGH 191 (369)
T ss_pred HHHHHhcCCCC----eEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCChhhhCCcEEEeccceeccCC
Confidence 88888886521 1222211 123222 3331 222 1 25899999999999987
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|+++.++++... .+.....+ ++ -....+..|..++ +.+.+..++++..++++++.
T Consensus 192 ~~~~gG~v~~~~~~l~~-~l~~~~~~-------------~g----~~~~p~~a~~~l~--~l~tl~~r~~~~~~na~~la 251 (369)
T cd00614 192 SDVIAGVVVGSGEALIQ-RLRFLRLA-------------LG----TILSPFDAWLLLR--GLKTLPLRMERHSENALKVA 251 (369)
T ss_pred CCceEEEEEeCcHHHHH-HHHHHHHh-------------hC----CCCCHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 53 6777765533222 11110000 00 0122445566655 44667788999999999999
Q ss_pred HHhccCCCcEEeCCC-----------------ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 675 GKVRRDPRFEISNDV-----------------RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 675 ~~L~~~~~~eil~~~-----------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+.|++.+.++-+.-| ..++++|.+.+. .....++.+.|.
T Consensus 252 ~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~-----~~~~~~f~~~l~ 307 (369)
T cd00614 252 EFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGG-----LEAAKKFLNALK 307 (369)
T ss_pred HHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCC-----HHHHHHHHHcCC
Confidence 999998876543222 357999999742 233445555554
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0011 Score=75.45 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=158.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-CCcCHHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATL 546 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G~mD~~~L 546 (891)
.+++||.++.++|.+.- + .+.-.|+++...=.+-..+..+.|.+.+.|.+|++ +-||++.|
T Consensus 54 a~~sgT~AL~laL~al~---i---------------g~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~i 115 (374)
T COG0399 54 AVSSGTAALHLALLALA---I---------------GPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLI 115 (374)
T ss_pred EecChHHHHHHHHHhcC---C---------------CCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHH
Confidence 35678888888887532 1 12225888888888887777889999999999965 89999999
Q ss_pred HHHHHhhhhcCCccEEEEecCCccc--------hhhh--------------------hcCCCCccEEEEcCcccCCcccc
Q psy852 547 RQVMQQDETMGYIPFFVSTTLGTTS--------CYRK--------------------SQGIEYADSFNVNVNKWLLTAFD 598 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~VvataGTT~--------c~~~--------------------ldGi~~aDSIs~d~HK~L~~P~g 598 (891)
|++|.+.++ -++.+-.+|-.. |.+| +-....+-++||-++|-+.+= .
T Consensus 116 e~aIt~~tK----AIipVhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittg-E 190 (374)
T COG0399 116 EAAITPRTK----AIIPVHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTG-E 190 (374)
T ss_pred HHHcccCCe----EEEEehhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCcccc-C
Confidence 999998632 445555566654 3321 112455788899999977654 4
Q ss_pred cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy852 599 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 678 (891)
Q Consensus 599 ~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~ 678 (891)
=|+++..|++.....-......+..+....+..-..+... |..- +=+++.....+.+.+..++..+++++..+.|+
T Consensus 191 GGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~--rm~~--iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~ 266 (374)
T COG0399 191 GGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNY--RLTE--IQAAIGLAQLERLDEINERRREIAQIYAEALK 266 (374)
T ss_pred ceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeeccccc--CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777765443322111111111000001111111111 1111 11334445567788888899999999999999
Q ss_pred cCCCcEEeCCCceeEEEEEecCCc-chhhhhhHHHHHHHHHhCCcE---EEeecc----cc----------------CCe
Q psy852 679 RDPRFEISNDVRLGLVCFRLRSEN-NLIADQNNRKLLEDINASGRL---HMVPAS----QE----------------QND 734 (891)
Q Consensus 679 ~~~~~eil~~~~~~iV~Fr~~~~~-~~~~d~ln~~L~~~L~~~G~~---~~s~s~----~~----------------g~~ 734 (891)
+.+++.+..++....-++...... +.. ......+.+.|++.|+. +..+.- .+ ...
T Consensus 267 ~~~~~~~p~~~~~~~~~~~~~~i~~~~~-~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r 345 (374)
T COG0399 267 GLPGITLPPEPDGAVHAWHLYTILVDEE-GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSER 345 (374)
T ss_pred cCCCccccCCCCCceeeeeeeEEEecCC-CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhC
Confidence 988877654443332222221110 000 23446788899988654 222210 00 011
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+ +-+++.++.+|+++++++|+++.
T Consensus 346 ~l~LP~~p~l~~~~~~~V~~~l~~~~ 371 (374)
T COG0399 346 ILSLPLHPNLSEEDVDRVIEALKEVL 371 (374)
T ss_pred eEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 23 44677899999999999999876
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.7e-05 Score=85.49 Aligned_cols=283 Identities=12% Similarity=0.064 Sum_probs=188.9
Q ss_pred HHHHHHH-HHHHHhhcc-CCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH-
Q psy852 443 RRHCELA-KLFEGKVRR-DPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV- 519 (891)
Q Consensus 443 ~~~lelA-r~l~~~L~~-~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv- 519 (891)
...++.+ +.+++.+.. .++ +|+ +++|+|+++...+.+.-... ..+.-.|+++..+|++.
T Consensus 62 ~~~~~~~r~~la~~~g~~~~~-~i~--~~~~~t~~i~~~~~~~~~~~---------------~~~gd~vl~~~~~~~s~~ 123 (401)
T PRK10874 62 TARYEAAREQVAQLLNAPDAK-NIV--WTRGTTESINLVAQSYARPR---------------LQPGDEIIVSEAEHHANL 123 (401)
T ss_pred HHHHHHHHHHHHHHcCCCCCC-EEE--EECCHHHHHHHHHHHhhhcc---------------CCCcCEEEECCcchHHHH
Confidence 3334444 467777765 333 566 67788998777665431100 01223588889999774
Q ss_pred ---HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------hhh-----hhcCC-
Q psy852 520 ---EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYR-----KSQGI- 579 (891)
Q Consensus 520 ---~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~-----~ldGi- 579 (891)
.+.+...|++++.||.+.++.+|+++|+++|+++++ .+++ .+..|+.. |++ .+|++
T Consensus 124 ~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~----lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 124 VPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTR----ILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcE----EEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 344566789999999998899999999999976432 2233 23456554 333 23332
Q ss_pred -----------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC---CC---ccc--cCCccc-cc
Q psy852 580 -----------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE---GA---IDY--RHWGIP-LS 639 (891)
Q Consensus 580 -----------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e---~~---~~~--~~~ti~-~S 639 (891)
-.+|.+++++||+ ++|.|+|+++++++ .+.. + ..+...+.. .. +.. ..+.++ ++
T Consensus 200 ~~g~~~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~-~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt 273 (401)
T PRK10874 200 GAVHFPADVQALDIDFYAFSGHKL-YGPTGIGVLYGKSE-LLEA-M---SPWQGGGKMLTEVSFDGFTPQSAPWRFEAGT 273 (401)
T ss_pred ccccccCCchhcCCCEEEEecccc-cCCCccEEEEEchH-HHhc-C---CCeecCCcceEeeccCccCCCCChhhccCCC
Confidence 1379999999995 56999999998755 2211 1 111111000 00 000 001111 12
Q ss_pred cc-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 640 RR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 640 Rr-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
.. ...+.+..+++.+...|+.+..++..++++++.+.|+++++++++.++..++++|.+.+. ..+++.+.|.
T Consensus 274 ~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~ 346 (401)
T PRK10874 274 PNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-------HHSDLVTLLA 346 (401)
T ss_pred cCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-------CHHHHHHHHH
Confidence 22 234678888888888899888899999999999999999999998777888999998643 3467888888
Q ss_pred hCCcEEEeecccc--------CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMVPASQE--------QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 719 ~~G~~~~s~s~~~--------g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++|+.+..++.+. ....+ +|++.++|++|||+++++|+++++
T Consensus 347 ~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~ 397 (401)
T PRK10874 347 EYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALE 397 (401)
T ss_pred HCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 8999876655332 23567 999999999999999999998774
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.001 Score=75.56 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=68.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++.+-+++.....+...+.+++.++++ +++.+|+++|++.+.+. +.+|+.+..+|.||.+-+ +++|+
T Consensus 107 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~s~~~~~~l~ 180 (378)
T PRK07682 107 EVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAK------TKAILLCSPNNPTGAVLNKSELEEIA 180 (378)
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcc------cEEEEEECCCCCcCcCcCHHHHHHHH
Confidence 37777778877777777677788888875 35789999999988643 335556667999999854 88999
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|-+|+.
T Consensus 181 ~~~~~~~~~ii~De~y~~ 198 (378)
T PRK07682 181 VIVEKHDLIVLSDEIYAE 198 (378)
T ss_pred HHHHHcCcEEEEehhhhh
Confidence 999999999999999954
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0018 Score=75.70 Aligned_cols=289 Identities=9% Similarity=0.057 Sum_probs=156.8
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++-+.+++.+... .++ ++++||+++..++.++...+..+. + ..+.-.|+++..+|.+...++...
T Consensus 67 ~fe~~lA~~~g~~---~~v--~~~sGt~al~~aL~al~~~~~~~~---------~-~~pGd~VIv~~~t~~a~~~~v~~~ 131 (438)
T PRK15407 67 AFEKKLAEFLGVR---YAL--LVNSGSSANLLAFSALTSPKLGDR---------A-LKPGDEVITVAAGFPTTVNPIIQN 131 (438)
T ss_pred HHHHHHHHHhCCC---eEE--EECCHHHHHHHHHHHHhhcccccc---------C-CCCCCEEEECCCCcHHHHHHHHHc
Confidence 3445555555542 244 567889999998876533221110 1 112335888999999998888888
Q ss_pred CceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcC--C-
Q psy852 527 FVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQG--I- 579 (891)
Q Consensus 527 gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldG--i- 579 (891)
|.+++.++++ .++.+|+++|++++.+.+ ..++++...|... |.++ .+| +
T Consensus 132 G~~pv~vdvd~~~~~id~~~le~~i~~~t----kaVi~~~~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G 207 (438)
T PRK15407 132 GLVPVFVDVELPTYNIDASLLEAAVSPKT----KAIMIAHTLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTG 207 (438)
T ss_pred CCEEEEEecCCCcCCcCHHHHHHHcCcCC----eEEEEeCCCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeee
Confidence 8899999887 468899999999987532 2344444566654 3331 122 1
Q ss_pred CCccEEE--EcCcccCCcccccEEEEEeCCccchhh--hcc-CCC---------ccccC-CCC----Ccccc-CCcc-cc
Q psy852 580 EYADSFN--VNVNKWLLTAFDSSCLWVADRYKLTSA--LVV-DPL---------YLQHG-HEG----AIDYR-HWGI-PL 638 (891)
Q Consensus 580 ~~aDSIs--~d~HK~L~~P~g~G~llvR~~~~L~~~--l~~-~~~---------Yl~~~-~e~----~~~~~-~~ti-~~ 638 (891)
...|--+ |.+.|-+.+--| |++++++++..... +.. ... +.... ... .+.+. .+.. ..
T Consensus 208 ~~gd~~~fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T PRK15407 208 TFGDIATLSFYPAHHITMGEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHL 286 (438)
T ss_pred ccCceEEEeCCCCCCccccCc-eEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccc
Confidence 1124444 445565543223 77777766533211 111 000 00000 000 00000 0000 00
Q ss_pred cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCc-EEeCC-Ccee----EEEEEecCCcchhhhhhHHH
Q psy852 639 SRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRF-EISND-VRLG----LVCFRLRSENNLIADQNNRK 712 (891)
Q Consensus 639 SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~-eil~~-~~~~----iV~Fr~~~~~~~~~d~ln~~ 712 (891)
+-.++-=.+.+++-....+.+.+.+++..++++++.+.|.++++. .+... +... ...+++.+.. ...-.+
T Consensus 287 G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~Rd~ 362 (438)
T PRK15407 287 GYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDA----GFTRVE 362 (438)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcC----CCCHHH
Confidence 001122234445555567778889999999999999999887753 23221 2211 2223332210 112457
Q ss_pred HHHHHHhCCcEEE---e-ecc----cc-------C---------CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 713 LLEDINASGRLHM---V-PAS----QE-------Q---------NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 713 L~~~L~~~G~~~~---s-~s~----~~-------g---------~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.+.|.++|+-.. . +.. .. . ...+ +-+++..|++|++.++++|++..
T Consensus 363 l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~ 434 (438)
T PRK15407 363 LVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFF 434 (438)
T ss_pred HHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 8889998887421 1 100 00 0 1123 33566789999999999999876
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00082 Score=77.39 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=63.8
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...+.+....+ ...|.++..++.+ +.+++++++++.+ -+|.++..+|.++.+.||++|++
T Consensus 105 ~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~-----~~e~l~~al~~~T------klV~lesPsNP~l~v~dl~~I~~ 173 (395)
T PRK05967 105 HALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE-----IGAGIAKLMRPNT------KVVHTEAPGSNTFEMQDIPAIAE 173 (395)
T ss_pred EEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC-----CHHHHHHhcCcCc------eEEEEECCCCCCCcHHHHHHHHH
Confidence 4788888887776533 3356788887543 3477888886543 48888888888999999999999
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|+++|+++.||.+|+.
T Consensus 174 la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 174 AAHRHGAIVMMDNTWAT 190 (395)
T ss_pred HHHHhCCEEEEECCccC
Confidence 99999999999999843
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.002 Score=73.59 Aligned_cols=259 Identities=9% Similarity=0.064 Sum_probs=141.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-CCcCHHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATL 546 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G~mD~~~L 546 (891)
+++|++.++..++.+.- . .+.-.|+++...|.+...++...|.+++.+++|++ +.+|+++|
T Consensus 51 ~~~sgt~al~~~l~~~~---~---------------~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~l 112 (375)
T PRK11706 51 LTPSCTAALEMAALLLD---I---------------QPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLI 112 (375)
T ss_pred EECCHHHHHHHHHHHhC---C---------------CCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHH
Confidence 56788888766654320 0 12235888999999999999889999999999877 48999999
Q ss_pred HHHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcCC---CCccEEEEcCc--ccCCcccc
Q psy852 547 RQVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQGI---EYADSFNVNVN--KWLLTAFD 598 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldGi---~~aDSIs~d~H--K~L~~P~g 598 (891)
++++++.+ ..++++...|+.. |.++ .+|- ...|.-++|.| |.+....
T Consensus 113 e~~i~~~t----k~i~~~~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~g~- 187 (375)
T PRK11706 113 EAAITPKT----RAIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGE- 187 (375)
T ss_pred HHhcCCCC----eEEEEeCCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCccccccC-
Confidence 99997632 2233445567654 3331 1111 11355556666 9886533
Q ss_pred cEEEEEeCCccchhh--hcc---CCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy852 599 SSCLWVADRYKLTSA--LVV---DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673 (891)
Q Consensus 599 ~G~llvR~~~~L~~~--l~~---~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L 673 (891)
-|++++.+++...+. +.. .......+....+.... +..+-+...+- +++-......+.+..++..++++++
T Consensus 188 gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~--aa~~~~ql~~l~~~~~~R~~~~~~~ 263 (375)
T PRK11706 188 GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVD--IGSSYLPSELQ--AAYLWAQLEAADRINQRRLALWQRY 263 (375)
T ss_pred CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeee--cccccCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666555433211 110 00000000000000000 11111111111 1221222344777788888999999
Q ss_pred HHHhccCCC---cEEeCCC-c----eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe---ecc-------c---c-
Q psy852 674 EGKVRRDPR---FEISNDV-R----LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV---PAS-------Q---E- 731 (891)
Q Consensus 674 ~~~L~~~~~---~eil~~~-~----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s---~s~-------~---~- 731 (891)
.+.|.++++ +++...+ . ...+.+++.+ .....++.+.|.++|+.... +.. . .
T Consensus 264 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~ 337 (375)
T PRK11706 264 YDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRD------LEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHG 337 (375)
T ss_pred HHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECC------cCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCC
Confidence 999988762 4332111 1 1233344432 12456888899999875211 100 0 0
Q ss_pred --------CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 --------QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 --------g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
....+ +-+++..+++|++.++++|++..
T Consensus 338 ~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 338 EDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred CChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 01133 44677899999999999998753
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0014 Score=76.00 Aligned_cols=156 Identities=10% Similarity=-0.008 Sum_probs=88.7
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-+++ -|+++.. +++|+++.+++ +.+.+...... .. .....|.. +.+......-.+++.+..+
T Consensus 262 pDi~~~--~K~l~gG~~p~~av~~~~~--i~~~~~~~~~~------~~-~~~~~T~~-~np~~~aaa~a~l~~l~~~--- 326 (423)
T PRK05964 262 PDIMCL--SKGLTGGYLPLAATLCTAE--IFEAFYSDDRA------KA-FMHSPSYT-ANPLACAAANASLDLFEDE--- 326 (423)
T ss_pred CCeeee--ehhhhcCcccceEEEEcHH--HHHhhhcCCcc------cc-cccCCCCC-cCHHHHHHHHHHHHHHHhc---
Confidence 576666 4999887 68898777644 22222110000 00 00011111 1222222333344444333
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
+..++..++.++|.+.|++...+..+.+ ....++.|.+.+... +.....+.+.|.++|++... . + ..+ +
T Consensus 327 ~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~---~~~~~~l~~~l~~~Gv~v~~-~---~-~~lR~ 398 (423)
T PRK05964 327 PVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVL---ERDGPALRAFALERGVLLRP-L---G-NTIYL 398 (423)
T ss_pred CHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcc---hhHHHHHHHHHHHCCeEEEe-c---C-CEEEE
Confidence 3456777788888888876543333322 123456777753210 12466888899999987432 1 2 356 9
Q ss_pred EecCCCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~~ 760 (891)
+++..+|++|||.+++.+++.+.
T Consensus 399 ~p~l~~t~edId~~v~~l~~al~ 421 (423)
T PRK05964 399 MPPYIITAEELDRITDAIVEVAD 421 (423)
T ss_pred eCCcccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999998763
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0023 Score=73.11 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=63.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC-CCCc--ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNS--LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~--id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
|+++.-.+......+...+.+++.|+++ ++|. .|+++|++.+++. +.+|+++..+|.+|.+-+ +++|+
T Consensus 115 Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~ 188 (397)
T PRK07568 115 ILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPK------TKAILISNPGNPTGVVYTKEELEMLA 188 (397)
T ss_pred EEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCcc------ceEEEEECCCCCCCccCCHHHHHHHH
Confidence 5555444443444446667899999987 3443 3578998887653 236677778999999875 78899
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++++++++|.+|+++
T Consensus 189 ~~~~~~~~~ii~De~y~~~ 207 (397)
T PRK07568 189 EIAKKHDLFLISDEVYREF 207 (397)
T ss_pred HHHHHCCcEEEEeccchhc
Confidence 9999999999999999654
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.004 Score=70.94 Aligned_cols=87 Identities=9% Similarity=0.077 Sum_probs=68.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-++.....++...|.+++.||++++ ..+|+++|++.+.+. +-+|.++..+|.||.+-+ +++|+
T Consensus 117 ~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~i~~P~NPtG~~~~~~~~~~i~ 190 (383)
T TIGR03540 117 IVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKK------AKLMFINYPNNPTGAVAPLKFFKELV 190 (383)
T ss_pred EEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcccc------ceEEEEeCCCCCcCccCCHHHHHHHH
Confidence 4677666666666667777889999999753 457999999887543 346666677999999988 68889
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|-+|+.
T Consensus 191 ~~a~~~~~~ii~De~y~~ 208 (383)
T TIGR03540 191 EFAKEYNIIVCHDNAYSE 208 (383)
T ss_pred HHHHHcCEEEEEecchhh
Confidence 999999999999999943
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.7e-05 Score=86.30 Aligned_cols=281 Identities=16% Similarity=0.124 Sum_probs=184.4
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH----HH
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AM 524 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka----a~ 524 (891)
.+.+++.+...+.-+|+ +++|+|+++..++........ .+...|+++..+|++.... +.
T Consensus 82 r~~la~~~~~~~~~~v~--~t~g~t~al~~i~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~a~ 144 (424)
T PLN02855 82 RKKVAAFINASTSREIV--FTRNATEAINLVAYTWGLANL---------------KPGDEVILSVAEHHSNIVPWQLVAQ 144 (424)
T ss_pred HHHHHHHcCCCCCCEEE--EeCCHHHHHHHHHHHhhhhcC---------------CCcCEEEECCCccHHHHHHHHHHHH
Confidence 34666677664333677 778999997766543211000 1223588888888875433 34
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC-----------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI----------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi----------- 579 (891)
..|++++.+|++.++.+|+++|++.|++.++ .+ ...+.+..|+.. |++ .+|+.
T Consensus 145 ~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~--lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~ 222 (424)
T PLN02855 145 KTGAVLKFVGLTPDEVLDVEQLKELLSEKTK--LVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQ 222 (424)
T ss_pred HcCCEEEEEecCCCCCcCHHHHHHHhccCce--EEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCch
Confidence 5689999999988888999999999976321 11 112233456654 433 12321
Q ss_pred -CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC--CCc-c---cc--CCcc-ccccc-ccchHHH
Q psy852 580 -EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE--GAI-D---YR--HWGI-PLSRR-FRSLKLW 648 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e--~~~-~---~~--~~ti-~~SRr-~~aL~lW 648 (891)
..+|.+.+++||+ ++|.|+|+++++++. +.. + ..+...+.. ..+ + +. ...+ .++.. ...+.++
T Consensus 223 ~~~~d~~~~s~~K~-~gp~G~G~l~~~~~~-~~~-~---~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~ 296 (424)
T PLN02855 223 TLGADFLVASSHKM-CGPTGIGFLWGKSDL-LES-M---PPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLG 296 (424)
T ss_pred hcCCCEEEeecccc-cCCCccEEEEEchhh-hhc-C---CCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHH
Confidence 2379999999995 569999999998652 211 1 111111100 000 0 00 0011 11222 2235788
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC------ceeEEEEEecCCcchhhhhhHHHHHHHHHhC-C
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV------RLGLVCFRLRSENNLIADQNNRKLLEDINAS-G 721 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G 721 (891)
.+++.+...|++++.++..++++++.+.|+++++++++++. ..++|+|.+++. ..+.+.+.|.++ |
T Consensus 297 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-------~~~~v~~~L~~~~g 369 (424)
T PLN02855 297 AAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-------HPTDLSTFLDQQHG 369 (424)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-------CHHHHHHHhcccCC
Confidence 88888888899999999999999999999999999998643 358999998643 345788888877 8
Q ss_pred cEEEeecccc-------C-CeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQE-------Q-NDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 722 ~~~~s~s~~~-------g-~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
+...+++.+. + ...+ +|+++++|++|||+++++|++++..
T Consensus 370 I~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 370 VAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred EEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 8766554221 1 2457 9999999999999999999988753
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0007 Score=78.98 Aligned_cols=196 Identities=12% Similarity=0.075 Sum_probs=108.0
Q ss_pred EEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCc----cc--------
Q psy852 508 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGT----TS-------- 571 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGT----T~-------- 571 (891)
.|+++...|.+..... .-.|++++.++ +.. |+++|+++|++.++ ++++-+.+. ..
T Consensus 110 ~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~~---d~e~l~~~l~~~tk-----~V~~e~~~Np~~~v~di~~I~~l 180 (437)
T PRK05613 110 HIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-NPD---DPESWQAAVQPNTK-----AFFGETFANPQADVLDIPAVAEV 180 (437)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCeEEEEEC-CCC---CHHHHHHhCCccCe-----EEEEECCCCCCCcccCHHHHHHH
Confidence 5888888988875433 34688888887 332 89999999876432 222323332 22
Q ss_pred hhh-----hhcCC-----------CCccEEEEcCcccCCcc-cccEEEEEeCCccc-hhhhcc--CCCccccCCCC--Cc
Q psy852 572 CYR-----KSQGI-----------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKL-TSALVV--DPLYLQHGHEG--AI 629 (891)
Q Consensus 572 c~~-----~ldGi-----------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L-~~~l~~--~~~Yl~~~~e~--~~ 629 (891)
|++ .+|+. -++|.+++|.|||++++ -+.|.+++.++..- ...... --.++-..... ..
T Consensus 181 a~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (437)
T PRK05613 181 AHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGL 260 (437)
T ss_pred HHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccc
Confidence 333 13331 25899999999999876 34566666433210 000000 00000000000 00
Q ss_pred ---cccC----------CcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC------C-
Q psy852 630 ---DYRH----------WGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND------V- 689 (891)
Q Consensus 630 ---~~~~----------~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~------~- 689 (891)
+++. +....+-...+...|+.+ -|.+-+.-++++..++|.++++.|+++|.++-+.- |
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~--rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~ 338 (437)
T PRK05613 261 KYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTA--QGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPW 338 (437)
T ss_pred cccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCcc
Confidence 0000 000011112245556554 48888999999999999999999999998753321 1
Q ss_pred ------c-----eeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 690 ------R-----LGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 690 ------~-----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+ -++++|.+++. .....++++.|+-
T Consensus 339 ~~~~~~~~~~g~gg~~sf~l~~~-----~~~~~~f~~~l~l 374 (437)
T PRK05613 339 YATKEKLGLKYTGSVLSFDIKGG-----KDEAWAFIDALKL 374 (437)
T ss_pred HHHHHHhcCCCCceEEEEEecCC-----HHHHHHHHHhCCc
Confidence 1 35999999642 1233455555543
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00038 Score=79.42 Aligned_cols=87 Identities=13% Similarity=-0.025 Sum_probs=67.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-++......+...|.+++.|+.|+ .+.+|+++|++.+++. +.+|+++..+|.+|.+-+ +++|++
T Consensus 117 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~i~~ 190 (386)
T PRK07550 117 VILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPR------TRAIALVTPNNPTGVVYPPELLHELYD 190 (386)
T ss_pred EEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhccc------CcEEEEeCCCCCCCcccCHHHHHHHHH
Confidence 66666565555555567788999999974 3568999999988753 234455567899998876 789999
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|++++++|++|.+|+.+
T Consensus 191 ~~~~~~~~iI~Dd~y~~~ 208 (386)
T PRK07550 191 LARRHGIALILDETYRDF 208 (386)
T ss_pred HHHHcCeEEEEeccchhh
Confidence 999999999999999654
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0034 Score=70.81 Aligned_cols=238 Identities=9% Similarity=0.081 Sum_probs=133.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+. .+ +.-.|+++.-.......++...|.+++.+|.++++.+|
T Consensus 78 ~i~--it~G~~~~l~~~~~~l----~~---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d 136 (351)
T PRK14807 78 NIF--VGNGSDEIIHLIMLAF----IN---------------KGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYD 136 (351)
T ss_pred cEE--EecCHHHHHHHHHHHh----cC---------------CCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCC
Confidence 555 6788888877665542 11 11135555555555666677889999999998889999
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC-------------C-Ccc-EEEEcCcc
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI-------------E-YAD-SFNVNVNK 591 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi-------------~-~aD-SIs~d~HK 591 (891)
+++|+++++... ...++++ +-.|++. |.++ +|.+ . .-. -+.-+..|
T Consensus 137 ~~~l~~~~~~~~---~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK 213 (351)
T PRK14807 137 VGSFIKVIEKYQ---PKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSK 213 (351)
T ss_pred HHHHHHHhhccC---CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchH
Confidence 999999987521 1123332 2345443 1110 1110 0 001 12233445
Q ss_pred cCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy852 592 WLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670 (891)
Q Consensus 592 ~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA 670 (891)
.++.| .-+|+++. +++ +.+.+.... . ......+.+..+.+.+....+++.++...+.+
T Consensus 214 ~~~~~GlRiG~~v~-~~~-~~~~~~~~~--------------~-----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r 272 (351)
T PRK14807 214 AFGLAGLRVGYAVA-NEN-ILKYLNLVK--------------S-----PYNINSLSQVIALKVLRTGVLKERVNYILNER 272 (351)
T ss_pred hcccchhceeeeec-CHH-HHHHHHHcc--------------C-----CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55433 33444442 111 111111000 0 00112344555555554445677777778888
Q ss_pred HHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-ccCCeEE-EEecCCCCHHHH
Q psy852 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS-QEQNDEV-FELQERKRKDDL 748 (891)
Q Consensus 671 ~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~-~~g~~~l-~sv~~~tT~edI 748 (891)
+++.+.|++.+++.+. ++..+.+.+++. ....+.+.|.+.|+.+..... ......+ +++. +.++.
T Consensus 273 ~~l~~~l~~~~g~~~~-~~~~~~~~i~~~---------~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~---~~~~~ 339 (351)
T PRK14807 273 ERLIKELSKIPGIKVY-PSKTNFILVKFK---------DADYVYQGLLERGILVRDFSKVEGLEGALRITVS---SCEAN 339 (351)
T ss_pred HHHHHHHHhCCCcEEC-cCCccEEEEEcC---------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC---CHHHH
Confidence 8899999888888764 455555666663 135778888888977543221 1223455 7765 67889
Q ss_pred HHHHHHHHHH
Q psy852 749 AYKRSFFVRM 758 (891)
Q Consensus 749 d~li~~L~ei 758 (891)
++++++|+++
T Consensus 340 ~~l~~~l~~~ 349 (351)
T PRK14807 340 DYLINGLKEL 349 (351)
T ss_pred HHHHHHHHHh
Confidence 9999999865
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00063 Score=76.15 Aligned_cols=79 Identities=14% Similarity=0.017 Sum_probs=61.6
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~ 221 (891)
|++..-++.+....+...+.+++.++ |++.|++.+.+ . -+|+++..+|.+|.+-+ +++|+++|
T Consensus 89 vl~~~p~y~~~~~~~~~~g~~~~~~~-------d~~~l~~~~~~-~------~~v~i~~p~NPtG~~~~~~~~~~l~~~a 154 (330)
T TIGR01140 89 VLVLAPTYSEYARAWRAAGHEVVELP-------DLDRLPAALEE-L------DVLVLCNPNNPTGRLIPPETLLALAARL 154 (330)
T ss_pred EEEeCCCcHHHHHHHHHcCCEEEEeC-------CHHHHHhhccc-C------CEEEEeCCCCCCCCCCCHHHHHHHHHHh
Confidence 55556677777777777778888887 88999887732 1 26666778999999999 66677888
Q ss_pred HHcCCceeeeccccCC
Q psy852 222 KEFDVWLHVDGAYAGS 237 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~ 237 (891)
+++|+++++|.+|+++
T Consensus 155 ~~~~~~ii~De~y~~~ 170 (330)
T TIGR01140 155 RARGGWLVVDEAFIDF 170 (330)
T ss_pred HhcCCEEEEECccccc
Confidence 9999999999999543
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0018 Score=73.18 Aligned_cols=215 Identities=9% Similarity=0.010 Sum_probs=127.1
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh--
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR-- 574 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~-- 574 (891)
.|+++.-.+......+...|.+++.+|. .++.+|+++|++++++.. ..++++ +..|++. |..
T Consensus 110 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~v~l~~p~nptG~~~~~~~l~~l~~~~~ 184 (367)
T PRK02731 110 EVIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVTPRT----RLVFIANPNNPTGTYLPAEEVERFLAGVP 184 (367)
T ss_pred EEEEecCCHHHHHHHHHHcCCeEEEecc-cCCCCCHHHHHHHhCCCC----cEEEEeCCCCCCCcCCCHHHHHHHHHhCC
Confidence 4666666666666666778899999998 457899999999986421 122222 2345554 111
Q ss_pred -----hhcC--------------CC----CccEE-EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 575 -----KSQG--------------IE----YADSF-NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 575 -----~ldG--------------i~----~aDSI-s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
.+|. +. .-+.| .-+..|.++.| ..+|+++..++ +.+.+.....
T Consensus 185 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~--~~~~l~~~~~---------- 252 (367)
T PRK02731 185 PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPE--IIDALNRVRQ---------- 252 (367)
T ss_pred CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHH--HHHHHHHccC----------
Confidence 0111 00 01122 22567877544 56788876532 2222211000
Q ss_pred cccCCcccccccccchHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhh
Q psy852 630 DYRHWGIPLSRRFRSLKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQ 708 (891)
Q Consensus 630 ~~~~~ti~~SRr~~aL~lW~~L~~lG~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ 708 (891)
.+. ...+.++++...+-... +++..++..++.+++.+.|++. ++.+. ++..+.+++++.+. .
T Consensus 253 ---~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~------~ 315 (367)
T PRK02731 253 ---PFN------VNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDG------K 315 (367)
T ss_pred ---CCC------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCC------C
Confidence 001 11344555555554333 4566666677888888989886 66655 45667888887321 2
Q ss_pred hHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 709 NNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 709 ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...++.+.|.+.|+.+..+........+ ++++ +.+++++++++|+++.
T Consensus 316 ~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~ 364 (367)
T PRK02731 316 DAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFL 364 (367)
T ss_pred CHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHH
Confidence 4567888998899875544333223456 8875 7899999999998865
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00019 Score=81.97 Aligned_cols=85 Identities=6% Similarity=0.077 Sum_probs=69.7
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i 220 (891)
|+++.-+|......+...|.+++.|++++ ++.+|++.|++.+++. +.+|+++..+|.||.+ +++++|+++
T Consensus 117 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~NPTG~~~s~~~~~~i~~~ 190 (384)
T PRK12414 117 VIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPR------TRMIIVNTPHNPSATVFSAADLARLAQL 190 (384)
T ss_pred EEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcc------cEEEEEcCCCCCCCcCCCHHHHHHHHHH
Confidence 66777778777777776778999999874 5689999999988643 3466667789999997 678899999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++++++.+|.+|+
T Consensus 191 a~~~~~~ii~De~Y~ 205 (384)
T PRK12414 191 TRNTDIVILSDEVYE 205 (384)
T ss_pred HHHCCeEEEEhhhhh
Confidence 999999999999994
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00048 Score=78.96 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=70.2
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~i 220 (891)
|++..-++......+...|.+++.++++++ +.+|++.|++.+++.. ..+-+|+++..+|.||.+- ++++|+++
T Consensus 118 vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~ 194 (391)
T PRK07309 118 VLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG---DKLKAVILNYPANPTGVTYSREQIKALADV 194 (391)
T ss_pred EEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC---CCeEEEEEECCCCCCCcCcCHHHHHHHHHH
Confidence 666666777777777777889999998765 4799999999986531 1234666677899999874 58899999
Q ss_pred HHHcCCceeeeccccCC
Q psy852 221 AKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~ 237 (891)
|+++++++++|.+|+.+
T Consensus 195 ~~~~~~~ii~D~~y~~~ 211 (391)
T PRK07309 195 LKKYDIFVISDEVYSEL 211 (391)
T ss_pred HHHcCcEEEEEccccce
Confidence 99999999999999543
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0045 Score=70.53 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=142.8
Q ss_pred HHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC--Cccc--------hhhh-----hcCC----
Q psy852 519 VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL--GTTS--------CYRK-----SQGI---- 579 (891)
Q Consensus 519 v~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata--GTT~--------c~~~-----ldGi---- 579 (891)
+.+-+...|.+++.+.++..-.+|+++++++|+++..- ...++|-++. |... |++| +|++
T Consensus 95 ~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~-~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~G 173 (383)
T COG0075 95 FAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDI-KAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLG 173 (383)
T ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCc-cEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCC
Confidence 44555667889999999877889999999999964321 1233333332 3332 3333 4443
Q ss_pred --------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccC-C-CccccCCC-CCc---cccCCcccccccccch
Q psy852 580 --------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD-P-LYLQHGHE-GAI---DYRHWGIPLSRRFRSL 645 (891)
Q Consensus 580 --------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~-~-~Yl~~~~e-~~~---~~~~~ti~~SRr~~aL 645 (891)
=++|-+....+|.+++|-|.|++.++++.. ....... + -|+.=... ..+ ....+|.+- ---.
T Consensus 174 g~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~-e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv---~~i~ 249 (383)
T COG0075 174 GEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERAL-EAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPV---NLIY 249 (383)
T ss_pred CcccchhhcCccEEEecCchhccCCCccceeEECHHHH-HHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCH---HHHH
Confidence 137999999999999999999999987742 1111111 1 23320000 000 011122211 0123
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--RL-GLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
.+-.+|+.+-.+|++++++++..+++++.+.+++. +|+++.++ .+ .+++|+.+.. .+ ...+...+.+++.
T Consensus 250 aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g----~~--~~~~~~~~~~~~g 322 (383)
T COG0075 250 ALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEG----VD--DKKVRRALLKEYG 322 (383)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCC----CC--cHHHHHHHHHhCC
Confidence 56678889999999999999999999999999986 78887644 23 5667776432 11 2233335555533
Q ss_pred EEEeecc-ccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 723 LHMVPAS-QEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 723 ~~~s~s~-~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+.+.+.. .-...++ |..+-..+.+|+..++.+|+..+.
T Consensus 323 ~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~ 362 (383)
T COG0075 323 VEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALR 362 (383)
T ss_pred EEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 3344433 2222344 764448899999999999998774
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0029 Score=72.49 Aligned_cols=276 Identities=9% Similarity=0.097 Sum_probs=148.1
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
+..+++++.... + .++ +++|+++++..++.+.. ..+.-.|+++...|.+...++...
T Consensus 35 ~~e~~la~~~g~-~--~~v--~~~sgt~aL~~~l~al~------------------~~pGd~Viv~~~t~~~~~~~~~~~ 91 (376)
T TIGR02379 35 RCETWLENRTGT-K--KAL--LTPSCTAALEMAALLLD------------------IQPGDEVIMPSYTFVSTANAFVLR 91 (376)
T ss_pred HHHHHHHHHhCC-C--eEE--EeCCHHHHHHHHHHHcC------------------CCCcCEEEECCCCcHHHHHHHHHc
Confidence 334455555443 2 244 56788888776655421 012235888889999998888888
Q ss_pred CceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcC--C-
Q psy852 527 FVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQG--I- 579 (891)
Q Consensus 527 gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldG--i- 579 (891)
|.+++.+++|++ +.+|+++|++++++.++ .++++...|+.. |+++ .+| +
T Consensus 92 G~~~v~vd~d~~~~~~d~~~le~~i~~~tk----~Iip~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g 167 (376)
T TIGR02379 92 GAKIVFVDIRPDTMNIDETLIESAITHRTK----AIVPVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALG 167 (376)
T ss_pred CCEEEEEecCCCcCCCCHHHHHHhcCcCce----EEEEeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccC
Confidence 999999999876 68999999999876422 233445566654 3331 222 1
Q ss_pred CCccEEEEcCc--ccCCcccccEEEEEeCCccchhhhccCCCccccC-----CCCCccccCCcccccccccchHHHHHHH
Q psy852 580 EYADSFNVNVN--KWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHG-----HEGAIDYRHWGIPLSRRFRSLKLWFVIR 652 (891)
Q Consensus 580 ~~aDSIs~d~H--K~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~-----~e~~~~~~~~ti~~SRr~~aL~lW~~L~ 652 (891)
...|.-+||+| |-+..-...|++++.+++.....-.......... ....+.+...+.. . +..-+. +++-
T Consensus 168 ~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n-~-~~~~~~--Aa~g 243 (376)
T TIGR02379 168 SIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSS-Y-LPSELQ--AAYL 243 (376)
T ss_pred CCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeeccc-C-CccHHH--HHHH
Confidence 11244445544 4443211357788877654432211110000000 0000000001110 0 111121 1222
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCC--C-cEEeC-CCce----eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 653 TYGLSGLQKYIRRHCELAKLFEGKVRRDP--R-FEISN-DVRL----GLVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 653 ~lG~~G~~~~i~~~~~lA~~L~~~L~~~~--~-~eil~-~~~~----~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
.-..+.+.+.+++..+++++..+.|...+ + +++.. ++.. ...++++.+. ....++.+.|.++|+..
T Consensus 244 ~~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~r~~l~~~L~~~gI~~ 317 (376)
T TIGR02379 244 WAQLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDE------DDRNELIKYLKEQEIMA 317 (376)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCc------CCHHHHHHHHHHCCCCc
Confidence 22345677778888888888888887754 2 22221 1111 2333444321 13468888999988752
Q ss_pred Ee---ecc-------c---cC---------CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 725 MV---PAS-------Q---EQ---------NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 725 ~s---~s~-------~---~g---------~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.. +.. . .+ ...+ +-+++..|++|+++++++|++..
T Consensus 318 ~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 318 VFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred cccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 11 100 0 00 1234 55778899999999999998753
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0015 Score=75.19 Aligned_cols=215 Identities=13% Similarity=0.133 Sum_probs=123.6
Q ss_pred EEecccchHHHH----HHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hh
Q psy852 509 AYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CY 573 (891)
Q Consensus 509 I~~S~~aH~Sv~----Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~ 573 (891)
|+++...|.+.. +.+...|++++.++.+ |+++|++++++.++ .+++. +..|... |+
T Consensus 95 Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~tk----lV~l~~p~NptG~~~dl~~I~~la~ 165 (390)
T PRK08064 95 VLISEDVYGGTYRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIKPNTK----LFYVETPSNPLLKVTDIRGVVKLAK 165 (390)
T ss_pred EEEccCccchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCce----EEEEECCCCCCcEeccHHHHHHHHH
Confidence 666777665433 3334568888888874 68888888865321 22222 1234332 22
Q ss_pred hh-----hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 574 RK-----SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 574 ~~-----ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
++ +|+ + -++|-+..++|||+++|-+ .|++++++++........... +
T Consensus 166 ~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~--------------~- 230 (390)
T PRK08064 166 AIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNS--------------F- 230 (390)
T ss_pred HcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHh--------------c-
Confidence 21 121 1 2479999999999999987 588887765433221101000 0
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcE-EeCC-----C-----------ceeEEEEEe
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFE-ISND-----V-----------RLGLVCFRL 698 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~e-il~~-----~-----------~~~iV~Fr~ 698 (891)
+-...+...|..+ .|..-+..++++..+++..+.+.|++.|.+. +.-+ | ..++|+|.+
T Consensus 231 ---g~~~~~~~a~l~~--~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~ 305 (390)
T PRK08064 231 ---GAVLGVQDCWLVL--RGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTL 305 (390)
T ss_pred ---CCCCCHHHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEE
Confidence 1111223455543 4666678899999999999999999887653 2211 1 236999999
Q ss_pred cCCcchhhhhhHHHHHHHHHhCCcEEEee--------------ccc-------cC--CeEE-EEecCCCCHHHHHHHHHH
Q psy852 699 RSENNLIADQNNRKLLEDINASGRLHMVP--------------ASQ-------EQ--NDEV-FELQERKRKDDLAYKRSF 754 (891)
Q Consensus 699 ~~~~~~~~d~ln~~L~~~L~~~G~~~~s~--------------s~~-------~g--~~~l-~sv~~~tT~edId~li~~ 754 (891)
.+. + ...++++.|.--......+ +.. .| ...+ +|++.+.+++.|+.+.++
T Consensus 306 ~~~-----~-~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~A 379 (390)
T PRK08064 306 QSE-----E-AVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQA 379 (390)
T ss_pred CCH-----H-HHHHHHHhCCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 532 1 2223344332210011111 000 11 3466 999999888888888888
Q ss_pred HHHH
Q psy852 755 FVRM 758 (891)
Q Consensus 755 L~ei 758 (891)
|+++
T Consensus 380 l~~~ 383 (390)
T PRK08064 380 LSYV 383 (390)
T ss_pred HHhc
Confidence 8764
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00034 Score=79.91 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=70.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-+|.+....+...+.+++.+++|. ++.+|+++|++.+.+.+ .+|+.+..+|.||.+-+ +++|+
T Consensus 116 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~i~ 189 (388)
T PRK07337 116 EVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERT------RGVLLASPSNPTGTSIAPDELRRIV 189 (388)
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccc------eEEEEECCCCCCCcCcCHHHHHHHH
Confidence 377778888888877766677899999875 46899999999886532 35666778999999766 67888
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|-+|.+
T Consensus 190 ~~a~~~~~~ii~De~y~~ 207 (388)
T PRK07337 190 EAVRARGGFTIVDEIYQG 207 (388)
T ss_pred HHHHHCCCEEEEeccccc
Confidence 899999999999999954
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0013 Score=74.48 Aligned_cols=245 Identities=15% Similarity=0.170 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC---CCCCCcCHHHHHHHH
Q psy852 474 ECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVM 550 (891)
Q Consensus 474 ean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~---d~~G~mD~~~Le~aI 550 (891)
.+..+||.+.| ..++. -.|+.+...|+|-.||+...|.+++.||. .+.-..|++++++.|
T Consensus 86 m~l~l~l~~l~--~r~~a---------------~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i 148 (389)
T PF05889_consen 86 MSLTLCLLALR--MRPKA---------------KYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKI 148 (389)
T ss_dssp HHHHHHHHHHH--HHCT-----------------EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHH
T ss_pred cHHHHHHHHHh--cccCC---------------ceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHH
Confidence 67888899988 22221 14888999999999999999999999985 234567899999999
Q ss_pred HhhhhcCCcc-EEEEec-CCccc------------hhh----h----hcCC---------------CCccEEEEcCcccC
Q psy852 551 QQDETMGYIP-FFVSTT-LGTTS------------CYR----K----SQGI---------------EYADSFNVNVNKWL 593 (891)
Q Consensus 551 ~~d~~~g~ip-~~Vvat-aGTT~------------c~~----~----ldGi---------------~~aDSIs~d~HK~L 593 (891)
++. |..+ ++|..+ .+... |++ | .-|+ .++|-+.=+.-|=+
T Consensus 149 ~~~---G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF 225 (389)
T PF05889_consen 149 EEL---GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNF 225 (389)
T ss_dssp HHH---CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHH
T ss_pred HHh---CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCE
Confidence 664 3333 333322 12111 333 1 1244 78899999999999
Q ss_pred CcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc--cchHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy852 594 LTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF--RSLKLWFVIRTYGLSGLQKYIRRHCELAK 671 (891)
Q Consensus 594 ~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~--~aL~lW~~L~~lG~~G~~~~i~~~~~lA~ 671 (891)
++|.|=+++...++..+.. ....|- +|-+ ..+-+-..|..+|..||...+....++-.
T Consensus 226 ~VPvGgai~As~~~~~i~~---vs~~Yp-----------------GRas~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~ 285 (389)
T PF05889_consen 226 MVPVGGAIMASFDPSGILA---VSKEYP-----------------GRASASPSLDLFITLLSLGCTGYGALLKERKASFP 285 (389)
T ss_dssp CEESSHEEEEESSHHHHHH---HHHTSH-----------------SHBTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcEEEecCHHHHHH---HHHHhh-----------------hhhhcccchHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999988877766543321 111221 2211 23667788999999999999999999999
Q ss_pred HHHHHhccCC---CcEEeCCCc-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE---EEeeccccCC--------eEE
Q psy852 672 LFEGKVRRDP---RFEISNDVR-LGLVCFRLRSENNLIADQNNRKLLEDINASGRL---HMVPASQEQN--------DEV 736 (891)
Q Consensus 672 ~L~~~L~~~~---~~eil~~~~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~---~~s~s~~~g~--------~~l 736 (891)
++.++|++.. +-.++..|. .-.+.|........ .+...-.|...|-.+|+. .+++..-... .++
T Consensus 286 ~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~-~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Yl 364 (389)
T PF05889_consen 286 YLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEI-SQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYL 364 (389)
T ss_dssp HHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTC-CSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEE
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhh-ccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHH
Confidence 9999997631 223333333 33555665433211 113445778888776543 2222111111 345
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.....+++||||.+++.|++++
T Consensus 365 t~AsaiG~~~eevd~~v~rL~k~i 388 (389)
T PF05889_consen 365 TAASAIGMTREEVDYFVKRLDKII 388 (389)
T ss_dssp EEEE-TT--HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHh
Confidence 65667899999999999999876
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0019 Score=72.81 Aligned_cols=212 Identities=10% Similarity=0.056 Sum_probs=118.4
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK- 575 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~- 575 (891)
.|+++.-.+......+...|.+++.+|.+.++.+|+++|++.++... ..++++ +..|+.. |.++
T Consensus 113 ~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 188 (361)
T PRK00950 113 EVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKT----KVIFLCTPNNPTGNLIPEEDIRKILESTD 188 (361)
T ss_pred EEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCC----CEEEEeCCCCCCCCCcCHHHHHHHHHHCC
Confidence 36666656666666777889999999988888999999999886421 122222 3345554 2221
Q ss_pred ----hcCC-------------CCccEE--EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 576 ----SQGI-------------EYADSF--NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 576 ----ldGi-------------~~aDSI--s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
+|.. ...|.+ .-+..|.++.| .-+|+++..++ +...+..... .++
T Consensus 189 ~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~--~~~~~~~~~~-------------~~~ 253 (361)
T PRK00950 189 ALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEW--LIDYYMRAKT-------------PFS 253 (361)
T ss_pred cEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHH--HHHHHHHhcC-------------CCC
Confidence 1111 011211 22566766544 23455543221 1111110000 000
Q ss_pred ccccccccchHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHH
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLL 714 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~ 714 (891)
...+.++.++..+...+ +++..++..++++++.+.|. +.+. ++..+.+++++.+. ...++.
T Consensus 254 ------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~----~~~~-~~~~~~i~~~~~~~-------~~~~~~ 315 (361)
T PRK00950 254 ------LTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP----FKVY-PSEANFVLVDVTPM-------TAKEFC 315 (361)
T ss_pred ------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC----eeEC-CCcceEEEEECCCC-------CHHHHH
Confidence 11234444444443333 45555666666777777765 4443 45567777887422 456888
Q ss_pred HHHHhCCcEEEeeccc--cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 715 EDINASGRLHMVPASQ--EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 715 ~~L~~~G~~~~s~s~~--~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.|.++|+.+..+... .+...+ ++++ +.+++++++++|+++.
T Consensus 316 ~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 316 EELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred HHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 8998899775443332 223456 8876 7789999999998764
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00025 Score=80.08 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=67.2
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC---CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC-HHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD---DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN-LAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d---~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp-l~~I~~i 220 (891)
|+.|...|+|-.|++...|.+++.||.. +.-..|++++++.+++. |..+++.+.|.-+-..+-.-| +.+|+++
T Consensus 104 Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~Iaki 180 (389)
T PF05889_consen 104 VIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAKI 180 (389)
T ss_dssp EEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHHH
T ss_pred EEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHHH
Confidence 7778899999999998888888888852 33456888899888543 555788888888888888855 9999999
Q ss_pred HHHcCCceeeeccc
Q psy852 221 AKEFDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~~~~lHvDaA~ 234 (891)
|++||++..+.+||
T Consensus 181 C~~~~IPhlvNnAY 194 (389)
T PF05889_consen 181 CKEYDIPHLVNNAY 194 (389)
T ss_dssp HHHHT--EEEEGTT
T ss_pred HHHcCCceEEccch
Confidence 99999999999999
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0045 Score=69.82 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=68.2
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|+++.-+.......+...|.+++.|++|+++.+|+++|+++++... +-+|+++..+|.||.+-+.+++.++++++
T Consensus 103 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~-----~k~v~l~~p~NPtG~~~~~~~l~~l~~~~ 177 (351)
T PRK14807 103 VIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQ-----PKLVFLCNPNNPTGSVIEREDIIKIIEKS 177 (351)
T ss_pred EEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 5555555444455556778899999999889999999999886421 23566667899999999999999999998
Q ss_pred CCceeeeccccC
Q psy852 225 DVWLHVDGAYAG 236 (891)
Q Consensus 225 ~~~lHvDaA~GG 236 (891)
+.++-+|.+|+.
T Consensus 178 ~~~~ivDe~y~~ 189 (351)
T PRK14807 178 RGIVVVDEAYFE 189 (351)
T ss_pred CCEEEEeCcchh
Confidence 888888999943
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0071 Score=69.57 Aligned_cols=265 Identities=12% Similarity=0.124 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccc-hHHHHHH
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEA-HSCVEKA 522 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~a-H~Sv~Ka 522 (891)
...++++.+.+.+. .+ .++ ++++|+++|..|+..||.....+ .|...++.+|++-..+ |-+..-+
T Consensus 80 ~~~~l~~~l~~~~~-~~--~~~--~~~SGs~A~e~ai~~a~~~~~~~---------~~~~~~~~~i~~~~~~yhg~~~~~ 145 (401)
T TIGR01885 80 VFGEFAEYVTKLFG-YD--KVL--PMNTGAEAVETAIKLARKWGYKV---------KGIPENQAIIVSAKGNFHGRTLGA 145 (401)
T ss_pred HHHHHHHHHHhhcC-CC--EEE--EeCccHHHHHHHHHHHHHHhhhh---------cCCCCCCCEEEEECCCcCcccHHH
Confidence 34556666666653 12 333 67889999999999999864322 1222234455555555 4343334
Q ss_pred HHHcCc------------eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEE-EEe---cCCccc------------hhh
Q psy852 523 AMMAFV------------RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFF-VST---TLGTTS------------CYR 574 (891)
Q Consensus 523 a~l~gv------------~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~-Vva---taGTT~------------c~~ 574 (891)
..+.+- ++..+|.+ |+++|+++|++.. ..+..+ +-. +.|... |.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~--~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~ 218 (401)
T TIGR01885 146 ISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHG--PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTK 218 (401)
T ss_pred HhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcC--CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHH
Confidence 333221 12223321 5777887776421 122222 211 222221 322
Q ss_pred h-----------------------hcCCCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCcc
Q psy852 575 K-----------------------SQGIEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAID 630 (891)
Q Consensus 575 ~-----------------------ldGi~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~ 630 (891)
+ ..++ ..|.++++ |.+++. +.+|+++.+.. +.+.+.. .+.
T Consensus 219 ~~~lli~DEv~~g~g~~G~~~~~~~~~~-~~di~~~g--K~l~~g~~~ig~v~~~~~--i~~~~~~--~~~--------- 282 (401)
T TIGR01885 219 HNVLLIADEIQTGLGRTGKLLCVDHENV-KPDIVLLG--KALSGGVYPVSAVLADDD--VMLTIKP--GEH--------- 282 (401)
T ss_pred cCCEEEEechhhCCCccchhhHHhhcCC-CCCEEEee--ccccCCCCCcEEEEEcHH--HHhhccC--CCC---------
Confidence 1 1122 25777775 988765 45777776533 2221110 000
Q ss_pred ccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcchhhhh
Q psy852 631 YRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENNLIADQ 708 (891)
Q Consensus 631 ~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ 708 (891)
..+.. +-+........+|+.+..+.+. ++..+++++|.+.|++++ ..++.. ..-.+..+.+..... ..
T Consensus 283 --~~t~~-~~p~~~~aa~a~L~~i~~~~l~---~~~~~~~~~~~~~L~~l~-~~~~~~~~g~g~~~~i~~~~~~~---~~ 352 (401)
T TIGR01885 283 --GSTYG-GNPLACAVAVAALEVLEEEKLA---ENAEKLGEIFRDQLKKLP-KPIITEVRGRGLLNAIVIDESKT---GR 352 (401)
T ss_pred --CCCCC-CCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHhcc-CCceeEEeecCeeEEEEeccCcc---hh
Confidence 11111 1233333344555555444433 466677899999998863 122221 122343444432100 12
Q ss_pred hHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 709 NNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 709 ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...++.+.|.+.|++. .+. +...+ |+++..+|++|||++++.|++..
T Consensus 353 ~~~~l~~~l~~~Gv~v-~~~---~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 353 TAWDLCLKLKEKGLLA-KPT---HGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred HHHHHHHHHHhCCEEE-Eec---CCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 4568888998899774 332 23456 98888899999999999998754
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00023 Score=81.10 Aligned_cols=86 Identities=13% Similarity=0.100 Sum_probs=66.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC---CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~---~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~ 218 (891)
|+++.-++......+...|.+++.++++. ++.+|+++|++.+...+ .+|+++..+|.+|.+ +++.+|+
T Consensus 110 vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NptG~~~~~~~~~~i~ 183 (380)
T PRK06225 110 AVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENT------RLIYLIDPLNPLGSSYTEEEIKEFA 183 (380)
T ss_pred EEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCc------eEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 55555666666666666777899998743 35899999999886542 356666678899986 4599999
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++|+++++|.+|+.
T Consensus 184 ~~a~~~~~~ii~De~y~~ 201 (380)
T PRK06225 184 EIARDNDAFLLHDCTYRD 201 (380)
T ss_pred HHHHHCCcEEEEehhHHH
Confidence 999999999999999954
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00062 Score=78.78 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=70.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~i 220 (891)
|++.+-.+......+...|.+++.|++++ ++.+|+++|++.+.... -+|+++..+|.||.+- .+++|+++
T Consensus 142 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~------k~i~i~~p~NPtG~~~s~~~l~~l~~~ 215 (413)
T PLN00175 142 VILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKT------RAILINTPHNPTGKMFTREELELIASL 215 (413)
T ss_pred EEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCc------eEEEecCCCCCCCcCCCHHHHHHHHHH
Confidence 66666677777777777788999999974 57899999999886532 3666778889999996 57788999
Q ss_pred HHHcCCceeeeccccCC
Q psy852 221 AKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~ 237 (891)
|+++++++++|-+|+.+
T Consensus 216 a~~~~~~ii~De~Y~~l 232 (413)
T PLN00175 216 CKENDVLAFTDEVYDKL 232 (413)
T ss_pred HHHcCcEEEEecccCcc
Confidence 99999999999999554
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00055 Score=78.24 Aligned_cols=259 Identities=11% Similarity=-0.048 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
.+|.+..+- +-+........+|.+.++-.++.+.|.++++.|++.. -+ ..
T Consensus 14 ~~~~~~~~~---~~~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~-------v~--------------------~l 63 (374)
T TIGR01365 14 KRPGWSIEE---LKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYL-------IG--------------------IV 63 (374)
T ss_pred CCchhhHHH---HhhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcE-------EE--------------------EE
Confidence 456653333 3334444446799999999999999999999864420 00 13
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHH---HHHHHcCC-eEEEEecCCCCcccHHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVE---KAAMMAFV-RLKILEPDDKNSLRGATLRQ 184 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~---kaa~~~~~-~v~~V~~d~~g~id~~~L~~ 184 (891)
+++||.+--+...++.... +..++++. .|+-. +.+...+. ++..|+.+..-.+|+++++.
T Consensus 64 ~GsGT~a~Eaa~~nl~~~~-------------g~~vLv~g---~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~ 127 (374)
T TIGR01365 64 PASDTGAVEMALWSMLGCR-------------GVDVLAWE---SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF 127 (374)
T ss_pred CCchHHHHHHHHHHcCCCC-------------CCeEEEEC---HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC
Confidence 4667643223333332110 11223332 55543 44444565 57788766666789999872
Q ss_pred HHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeec--cccCCccccCCCCccCCCCcccccCCCCcc
Q psy852 185 VMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDG--AYAGSSFICPEFRPFMNGKTSFDNLHLSPI 262 (891)
Q Consensus 185 ~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDa--A~GG~~~~~~~~~~~~~g~~~~d~~~~s~~ 262 (891)
. + -|++|+..|.||...|+++|++.+ ++..+.||+ ++||--+
T Consensus 128 ----~-~------~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l----------------------- 171 (374)
T TIGR01365 128 ----K-N------DVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDL----------------------- 171 (374)
T ss_pred ----C-C------CEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCC-----------------------
Confidence 1 1 267999999999999998776432 467788887 3432110
Q ss_pred cccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeecccc
Q psy852 263 WYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYA 342 (891)
Q Consensus 263 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 342 (891)
T Consensus 172 -------------------------------------------------------------------------------- 171 (374)
T TIGR01365 172 -------------------------------------------------------------------------------- 171 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCc-----cccCCCCCCcccccccccCC
Q psy852 343 GSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP-----LYLQHGHEGAIDYRHWGIPL 417 (891)
Q Consensus 343 ~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~-----~y~~~~~~~~~~~~~~~~~~ 417 (891)
.++ .+|-+....+|.+.+|-+.|+++++++..-. .-...+ .|+.....+.+.. +.-.+
T Consensus 172 -----------~~d---~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~-~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~ 234 (374)
T TIGR01365 172 -----------DYH---KLDVVTFSWQKVLGGEGAHGMLILSPRAVAR-LESYTPAWPLPKIFRLTKGGKLNK--KIFEG 234 (374)
T ss_pred -----------Chh---HCcEEEEechhccCCCCceEEEEECHHHHHH-HhhcCCCCCChhhhccccccchhh--hhhcC
Confidence 011 2699999999999999999999998764322 111111 2222111000000 00011
Q ss_pred CCCh-h-HHHHHHH---HHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 418 SRRF-R-SLKLWFV---IRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 418 sr~~-~-~l~~w~~---l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
.-++ - ...+++. ++.+-.+ |+.++.++..++++.+++.+.+...++++.
T Consensus 235 ~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~ 289 (374)
T TIGR01365 235 STINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLA 289 (374)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 1222 1 1233433 4444465 899999999999999999999876566663
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0016 Score=75.02 Aligned_cols=185 Identities=10% Similarity=0.098 Sum_probs=109.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH-H---HcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-~---l~gv~v~~Vp~d~~G~mD~ 543 (891)
++.|+++++..++.+. .+ +.-.|+++...|.+....+ . ..+++++.++. .|+
T Consensus 73 vt~gg~~Ai~~~l~al----l~---------------~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-----~d~ 128 (388)
T PRK08861 73 VTNCGTSALNLWVSAL----LG---------------PDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ-----SDA 128 (388)
T ss_pred EECCHHHHHHHHHHHH----cC---------------CCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC-----CCH
Confidence 5678888888777653 11 1123666666666544433 2 23566666642 477
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~P 596 (891)
+++++++++.++ .+++. +..|+.. |+++ +|. + -+||-+..+.|||+++|
T Consensus 129 e~l~~~i~~~tk----lV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~ 204 (388)
T PRK08861 129 AALDAALAKKPK----LILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGH 204 (388)
T ss_pred HHHHHhcCcCCe----EEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCC
Confidence 888777765321 22221 2233332 2221 111 1 25899999999999999
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|+++.++++.... +. +++. .. +-...+...|..+ .|.+-+.-++++..++|..++
T Consensus 205 ~d~~gG~i~~~~~~~~~~-~~----~~~~---------~~----G~~~~p~~a~l~~--rgl~Tl~lR~~~~~~~a~~~a 264 (388)
T PRK08861 205 SDVIGGVLITKTKEHAEE-LA----WWGN---------CI----GATGTPFDSYMTL--RGIRTLGARMRVHEESAQQIL 264 (388)
T ss_pred CcceeEEEEecHHHHHHH-HH----HHHh---------cc----CCCCChHHHHHHH--hcCCCHHHHHHHHHHHHHHHH
Confidence 76 56666665432221 11 1110 00 1112234456554 488888899999999999999
Q ss_pred HHhccCCCcEEeCC------C-----------ceeEEEEEecC
Q psy852 675 GKVRRDPRFEISND------V-----------RLGLVCFRLRS 700 (891)
Q Consensus 675 ~~L~~~~~~eil~~------~-----------~~~iV~Fr~~~ 700 (891)
+.|+++|.++-+.- | -.++++|.+++
T Consensus 265 ~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (388)
T PRK08861 265 AYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG 307 (388)
T ss_pred HHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence 99999998764321 1 13699999974
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0064 Score=69.81 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEe
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FEL 739 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv 739 (891)
..++..+++++|.+.|++.....+.. ...-.++.|.+.+. +.....+.+.|.+.|+... + .+...+ +++
T Consensus 309 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~-----~~~~~~~~~~L~~~GV~v~-~---~~~~~lR~~p 379 (401)
T PRK00854 309 MIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPE-----AGGARQYCEALKERGLLAK-D---THDHTIRLAP 379 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEEEEecC-----chhHHHHHHHHHHCCeEEe-c---CCCCEEEEeC
Confidence 56677778899999998763221211 22344566665432 1234678888988998742 2 233567 999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei~ 759 (891)
+..+|++|||++++.|++.+
T Consensus 380 ~~~~t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 380 PLVITREQVDWALEQIAKVL 399 (401)
T ss_pred CcccCHHHHHHHHHHHHHHh
Confidence 98999999999999998764
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00021 Score=81.47 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=108.2
Q ss_pred cEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHh-hHH
Q psy852 583 DSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS-GLQ 660 (891)
Q Consensus 583 DSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~-G~~ 660 (891)
|-+..++||.++ |-|.|++++|++.. ...-...+.|+.-... ....+...+=+ +....+-.+|+.+-.+ |++
T Consensus 192 ~v~~~saqK~lG-P~Gl~~v~vr~~~l-~~~~~~~~~~~~~~~~----~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~ 265 (365)
T PLN02452 192 GVIYAGAQKNVG-PSGVTIVIIRKDLI-GNARPITPGMLDYKIH----AENDSLYNTPPCFGIYMCGLVFEDLLAQGGLK 265 (365)
T ss_pred CEEEEecccccC-CCCeEEEEEcHHHH-hhcccCCCchhhHHHH----HhcCCccCChhHHHHHHHHHHHHHHHHccCHH
Confidence 445579999885 99999999987742 1111112223211000 00000001111 2234556677777666 899
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEe-CCC--c-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEIS-NDV--R-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil-~~~--~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
.+.++..+++++|.+.|++.++|... .++ + ..+|+|++.+. + +.+++.+.+.+.|++-..+-.-.++ +
T Consensus 266 ~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~-----~-~~~~f~~~~~~~g~~~~~G~r~~gg--~ 337 (365)
T PLN02452 266 AMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS-----E-LEAEFVKEAAKAGMVQLKGHRSVGG--M 337 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc-----h-hHHHHHHHHHHCCCcccCCccccCc--e
Confidence 99999999999999999998877221 121 2 35899998754 2 7789999999999886555544444 6
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++-+.++.++|+++++.+++..
T Consensus 338 R~s~yna~~~~~v~~L~~~m~~f~ 361 (365)
T PLN02452 338 RASIYNAMPLAGVEKLVAFMKDFQ 361 (365)
T ss_pred EEECcCCCCHHHHHHHHHHHHHHH
Confidence 99888999999999999998764
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0076 Score=69.26 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=70.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCC--cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN--SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g--~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-++......+...|.+++.|++|+++ .+|+++|++.+.+. +-+|+++..+|.||.+-+ +++|+
T Consensus 119 ~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~~~s~~~~~~i~ 192 (399)
T PRK07681 119 IILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADK------AKMMILNFPGNPVPAMAHEDFFKEVI 192 (399)
T ss_pred EEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCcCcCCCHHHHHHHH
Confidence 36666677777777777788899999998653 67999999888543 346677777999999988 77888
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|++++++|-+|-+|+.
T Consensus 193 ~~a~~~~~~iI~De~y~~ 210 (399)
T PRK07681 193 AFAKKHNIIVVHDFAYAE 210 (399)
T ss_pred HHHHHcCeEEEEeccchh
Confidence 899999999999999954
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0045 Score=70.81 Aligned_cols=252 Identities=11% Similarity=0.013 Sum_probs=138.3
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++.+...+. +|+ +++|+++++..++.+. .+ +.-.|+++.-........+...|+++
T Consensus 94 ~ia~~~~~~~~-~I~--~t~Ga~~~i~~~~~~~----~~---------------~gd~Vlv~~P~y~~y~~~~~~~g~~~ 151 (380)
T PLN03026 94 ALAEDSGLESE-NIL--VGCGADELIDLLMRCV----LD---------------PGDKIIDCPPTFGMYVFDAAVNGAEV 151 (380)
T ss_pred HHHHHhCcChh-hEE--EcCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCChHHHHHHHHHcCCEE
Confidence 33444433333 455 6889999887765442 10 11135555555555556667789999
Q ss_pred EEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccchh----hh--------hcC--------------CCC
Q psy852 531 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTSCY----RK--------SQG--------------IEY 581 (891)
Q Consensus 531 ~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~c~----~~--------ldG--------------i~~ 581 (891)
+.+|.++++.+|+++|++++... +...++++ +-.|+..-. +. +|. ++.
T Consensus 152 ~~v~~~~~~~~d~~~l~~~~~~~---~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~~~vi~DeaY~~~~~~~~~~~~~~~ 228 (380)
T PLN03026 152 IKVPRTPDFSLDVPRIVEAVETH---KPKLLFLTSPNNPDGSIISDDDLLKILELPILVVLDEAYIEFSTQESRMKWVKK 228 (380)
T ss_pred EEeecCCCCCcCHHHHHHHHhcc---CCcEEEEeCCCCCCCCCCCHHHHHHHHhcCCEEEEECcchhhcCCcchHHHHHh
Confidence 99999888999999999988421 11223333 234554410 00 010 000
Q ss_pred --ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 582 --ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 582 --aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
-.-+.-+..|.++.| .-+|+++.. ++.+......... +. ...+.+.++...+....
T Consensus 229 ~~~viv~~SfSK~~glaGlRiGy~~~~-~~~i~~l~~~~~~--------------~~------~~~~~q~aa~~aL~~~~ 287 (380)
T PLN03026 229 YDNLIVLRTFSKRAGLAGLRVGYGAFP-LSIIEYLWRAKQP--------------YN------VSVAAEVAACAALSNPK 287 (380)
T ss_pred CCCEEEEecchHhhcCccccceeeecC-HHHHHHHHHhcCC--------------CC------CCHHHHHHHHHHhhCHH
Confidence 012234455655433 234444432 1111111000000 11 12233444444443222
Q ss_pred -HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 659 -LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 659 -~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
+++..++..+.++++.+.|++++.+++ .+...+.+.+++.+. ....++.+.|.+.|+.+..++.......+
T Consensus 288 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~~------~~~~~~~~~l~~~gI~v~~~~~~~~~~~lR 360 (380)
T PLN03026 288 YLEDVKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTSG------RDAKKLKEDLAKMGVMVRHYNSKELKGYIR 360 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCCC------CCHHHHHHHHHHCCeEEEECCCCCCCCEEE
Confidence 455566667788889999988766654 455677888887531 13467888888899875443332234466
Q ss_pred EEecCCCCHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei 758 (891)
++++ +.+++++++++|+++
T Consensus 361 is~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 361 VSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred EecC---CHHHHHHHHHHHHHh
Confidence 8887 678999999998753
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.002 Score=72.56 Aligned_cols=233 Identities=10% Similarity=0.039 Sum_probs=134.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +|.|+++++..++. .. . ++ +++ ..-+-......+...|++++.+|.|+++.+|
T Consensus 77 ~I~--it~Ga~~al~~~~~-----l~-~--------------~~-viv-~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d 132 (349)
T PRK07908 77 EVL--LLAGAAEGFALLAR-----LR-P--------------RR-AAV-VHPSFTEPEAALRAAGIPVHRVVLDPPFRLD 132 (349)
T ss_pred hEE--ECCCHHHHHHHHHh-----cC-C--------------Ce-EEE-eCCCChHHHHHHHHcCCEEEeeccCcccCcC
Confidence 666 78899998775543 11 0 11 222 2222233345566789999999998878899
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh------------hhcC-------CCCccEEEE-cCcc
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR------------KSQG-------IEYADSFNV-NVNK 591 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~------------~ldG-------i~~aDSIs~-d~HK 591 (891)
++++++ . ...++++ +-.|++. |.+ .+.+ ...-+.|.+ +++|
T Consensus 133 ~~~l~~----~----~~~i~l~np~NPTG~~~~~~~l~~l~~~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK 204 (349)
T PRK07908 133 PAAVPD----D----ADLVVIGNPTNPTSVLHPAEQLLALRRPGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTK 204 (349)
T ss_pred hhHhcc----C----CCEEEEcCCCCCCCCCcCHHHHHHHHhcCCEEEEECcchhhccCCccccccccCCCEEEEeeccc
Confidence 986532 1 1122222 3345554 211 1111 112256777 7899
Q ss_pred cCC-cccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHH
Q psy852 592 WLL-TAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669 (891)
Q Consensus 592 ~L~-~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~l 669 (891)
.++ ...-+|+++... +.+ +.+. ....| ... +-...++..| ++..+..-+++..++..++
T Consensus 205 ~~~l~GlRiG~~~~~~-~~~-~~~~~~~~~~--------------~~~-~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 265 (349)
T PRK07908 205 TWSLAGLRVGYALGAP-DVL-ARLTRGRAHW--------------PVG-TLQLEAIAAC--CAPRAVAEAAADAARLAAD 265 (349)
T ss_pred ccCCccceeeeeecCH-HHH-HHHHhcCCCC--------------Ccc-HHHHHHHHHH--hcccchHHHHHHHHHHHHH
Confidence 776 345688888643 222 2221 11111 000 0011112212 1111223455666777888
Q ss_pred HHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc--CCeEE-EEecCCCCHH
Q psy852 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--QNDEV-FELQERKRKD 746 (891)
Q Consensus 670 A~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--g~~~l-~sv~~~tT~e 746 (891)
++++.+.|++. ++++..++..+.+++++++ ...+.+.|.+.|+.+..+.... +...+ ++++ +.+
T Consensus 266 r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~~---------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~---~~~ 332 (349)
T PRK07908 266 RAEMVAGLRAV-GARVVDPAAAPFVLVRVPD---------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR---PRA 332 (349)
T ss_pred HHHHHHHHHhC-CcEeccCCCceEEEEECCc---------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC---CCc
Confidence 88999999887 7887776777888888752 3567778888898765544332 24566 8885 678
Q ss_pred HHHHHHHHHHHHH
Q psy852 747 DLAYKRSFFVRML 759 (891)
Q Consensus 747 dId~li~~L~ei~ 759 (891)
++++++++|+++.
T Consensus 333 ~~~~l~~al~~~~ 345 (349)
T PRK07908 333 EVPVLVQALAEIL 345 (349)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998775
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0014 Score=72.96 Aligned_cols=71 Identities=15% Similarity=0.288 Sum_probs=57.1
Q ss_pred HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 156 EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 156 ~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
..++.-.|+++++|+.+ |++.++++|+++++ .+.+=|.| |.-+.|-|++.|+++|+++|+++.||-+++
T Consensus 119 ~~tl~~~Gi~v~fvd~~-----d~~~~~~aI~~nTk-----avf~Etig-NP~~~v~Die~ia~iAh~~gvpliVDNT~a 187 (426)
T COG2873 119 SHTLKRLGIEVRFVDPD-----DPENFEAAIDENTK-----AVFAETIG-NPGLDVLDIEAIAEIAHRHGVPLIVDNTFA 187 (426)
T ss_pred HHHHHhcCcEEEEeCCC-----CHHHHHHHhCcccc-----eEEEEecc-CCCccccCHHHHHHHHHHcCCcEEEecCCC
Confidence 33444567899998754 48999999999875 45556666 667899999999999999999999999996
Q ss_pred CC
Q psy852 236 GS 237 (891)
Q Consensus 236 G~ 237 (891)
..
T Consensus 188 tp 189 (426)
T COG2873 188 TP 189 (426)
T ss_pred cc
Confidence 54
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0015 Score=75.07 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=116.0
Q ss_pred EEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...-....+-+. -.++++.+++. -|+++|++++++.+ .+|.+-..+|.+.-+-||++|+++
T Consensus 97 iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~-----~d~~~l~~~l~~~t------~~v~~EspsNP~l~v~Dl~~i~~~ 165 (386)
T PF01053_consen 97 IVASDDLYGGTYRLLEELLPRFGVEVTFVDP-----TDLEALEAALRPNT------KLVFLESPSNPTLEVPDLEAIAKL 165 (386)
T ss_dssp EEEESSSSHHHHHHHHHCHHHTTSEEEEEST-----TSHHHHHHHHCTTE------EEEEEESSBTTTTB---HHHHHHH
T ss_pred eEecCCccCcchhhhhhhhcccCcEEEEeCc-----hhHHHHHhhccccc------eEEEEEcCCCcccccccHHHHHHH
Confidence 6666554444443332 25778888754 47899999998854 477888888899999999999999
Q ss_pred HHHcC-CceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchh
Q psy852 221 AKEFD-VWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEG 299 (891)
Q Consensus 221 ~~~~~-~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (891)
|+++| +++.||.+|+..+.+ +|.
T Consensus 166 a~~~g~~~~vVDnT~atp~~~-------------------~pL------------------------------------- 189 (386)
T PF01053_consen 166 AKEHGDILVVVDNTFATPYNQ-------------------NPL------------------------------------- 189 (386)
T ss_dssp HHHTTT-EEEEECTTTHTTTC--------------------GG-------------------------------------
T ss_pred HHHhCCceEEeeccccceeee-------------------ccC-------------------------------------
Confidence 99998 999999999543321 110
Q ss_pred hHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccC--C
Q psy852 300 VLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAF--D 377 (891)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~--~ 377 (891)
- ..||-+.-+.-|++.+.- -
T Consensus 190 -------------------------------------------------------~---~GaDivv~S~TKyl~Ghsdv~ 211 (386)
T PF01053_consen 190 -------------------------------------------------------E---LGADIVVHSATKYLSGHSDVM 211 (386)
T ss_dssp -------------------------------------------------------G---GT-SEEEEETTTTTTTSSSE-
T ss_pred -------------------------------------------------------c---CCceEEEeeccccccCCccee
Confidence 0 037899999999876543 3
Q ss_pred ceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhc
Q psy852 378 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 457 (891)
Q Consensus 378 ~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~ 457 (891)
.|++.+++...+...+......+. -...+...|..++ |..-+.-++++..++|..+++.|+
T Consensus 212 ~G~vv~~~~~~~~~~l~~~~~~~G-----------------~~~~p~da~ll~r--gl~Tl~~R~~~~~~nA~~lA~~L~ 272 (386)
T PF01053_consen 212 GGAVVVNGSSELYDRLREFRRLLG-----------------ATLSPFDAWLLLR--GLRTLPLRMERQNENAEALAEFLE 272 (386)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHT------------------B--HHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECchhhhhhhhcchhhhcC-----------------ccchHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 688887764333322211100000 0124567787776 788899999999999999999999
Q ss_pred cCCccc
Q psy852 458 RDPRFE 463 (891)
Q Consensus 458 ~~~~~e 463 (891)
++|.++
T Consensus 273 ~hp~V~ 278 (386)
T PF01053_consen 273 EHPKVK 278 (386)
T ss_dssp TSTTEE
T ss_pred hCCCCC
Confidence 999876
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00059 Score=78.22 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=70.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-++.....++...|.+++.|++|.+ +.+|+++|++.+.+. +-+|.++.-+|.||.+-+ +++|+
T Consensus 123 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPtG~~~s~~~~~~i~ 196 (394)
T PRK05942 123 VVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQ------AKILYFNYPSNPTTATAPREFFEEIV 196 (394)
T ss_pred EEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcccc------ceEEEEcCCCCCCCCcCCHHHHHHHH
Confidence 3777777777777667667789999998753 469999999988643 346666667999999988 78889
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++++++.+|.+|+.+
T Consensus 197 ~~a~~~~~~iI~De~y~~~ 215 (394)
T PRK05942 197 AFARKYEIMLVHDLCYAEL 215 (394)
T ss_pred HHHHHcCeEEEEeccchhh
Confidence 9999999999999999543
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0053 Score=75.04 Aligned_cols=253 Identities=14% Similarity=0.125 Sum_probs=148.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--C---CCcCH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--K---NSLRG 543 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~---G~mD~ 543 (891)
+.|.|-+|.+++.++-. +.-.|++...+|-|+..++.+.|...+.+++.. . |.+++
T Consensus 217 vNGTS~~n~av~~a~~~-------------------~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~g~I~~ 277 (713)
T PRK15399 217 TNGTSTSNKIVGMYAAP-------------------AGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPR 277 (713)
T ss_pred eCChHHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHHHHHcCCeeEEecccccccCCcCCCCh
Confidence 34667788887776421 223589999999999999999999988887642 2 34566
Q ss_pred -----HHHHHHHHhhhhcCCccEEEEecCCccc--hh------------h-h--------------------hcCCCCcc
Q psy852 544 -----ATLRQVMQQDETMGYIPFFVSTTLGTTS--CY------------R-K--------------------SQGIEYAD 583 (891)
Q Consensus 544 -----~~Le~aI~~d~~~g~ip~~VvataGTT~--c~------------~-~--------------------ldGi~~aD 583 (891)
+.++++|++.... ..|..++.|..|.. |. - + +.+...+|
T Consensus 278 ~~~~~e~I~~~i~~~p~~-~~p~~vvit~pTYdGi~yd~~~I~~~~g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD 356 (713)
T PRK15399 278 REFTRDSIEEKVAATTQA-QWPVHAVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPG 356 (713)
T ss_pred hhccHHHHHHHHHhCCCc-CCceEEEEECCCCCceeeCHHHHHHHhCCCEEEEeccchhhhhcCcccCCcChhhCCCCCC
Confidence 9999999875432 34566777666655 10 0 1 11222478
Q ss_pred EE---EEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 584 SF---NVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 584 SI---s~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.. +-|.||.|.+--.++.+.++.... .+. .+..|+-+.+. .|. +.+ +.+|-....+. -|..| +
T Consensus 357 ~~i~~tQStHKtL~alTQaS~iHvk~~vd-~~~--~n~a~~m~~ST-SPs---Y~L-----mASLD~a~~~m-~~~~G-~ 422 (713)
T PRK15399 357 KVIFETQSTHKMLAAFSQASLIHIKGEYD-EET--FNEAFMMHTST-SPS---YPI-----VASVETAAAML-RGNPG-K 422 (713)
T ss_pred eeeeeeeehhccccccchheeeeecCCCC-HHH--HHHHHHHHcCC-CcH---HHH-----HHHHHHHHHHH-Hhhhh-H
Confidence 77 999999999999999998876411 111 11122211110 000 000 11122111111 11122 4
Q ss_pred HHHHHHHHHHHHHHHHhccCCC------cEEeCCC-----------------------------ceeEEEEEecCCcc--
Q psy852 661 KYIRRHCELAKLFEGKVRRDPR------FEISNDV-----------------------------RLGLVCFRLRSENN-- 703 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~------~eil~~~-----------------------------~~~iV~Fr~~~~~~-- 703 (891)
+.+++.++++..|.++|.++.+ |+++.+. +..-+.+..++.+.
T Consensus 423 ~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g 502 (713)
T PRK15399 423 RLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQG 502 (713)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCccccc
Confidence 4666777777778877777655 5666431 11222222221110
Q ss_pred --hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 704 --LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 704 --~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
++..--...+.+.|.+.|+. ....+.+.+ +.++...|++++++++++|.++-
T Consensus 503 ~~~~~Gi~g~~l~~~L~e~gI~----~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~ 557 (713)
T PRK15399 503 NMSEEGIPAALVAKFLDERGIV----VEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFK 557 (713)
T ss_pred ccccCCCCHHHHHHHHHHcCCE----EEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 01112234666778888987 555555556 77888899999999999998764
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0026 Score=71.92 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=55.2
Q ss_pred HHHHHHHcCCeEEEEecCCCC--cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCcee
Q psy852 155 VEKAAMMAFVRLKILEPDDKN--SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLH 229 (891)
Q Consensus 155 v~kaa~~~~~~v~~V~~d~~g--~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lH 229 (891)
....+...|.+++.++.+++. .+| +++++.+.+. +-+|+++..+|.||.+-+ +++|+++|++++++|-
T Consensus 107 ~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~------~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii 179 (356)
T PRK08056 107 YRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPD------LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALI 179 (356)
T ss_pred HHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCC------CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEE
Confidence 344556778899999987543 444 3454544322 236667888999999988 8889999999999999
Q ss_pred eeccccC
Q psy852 230 VDGAYAG 236 (891)
Q Consensus 230 vDaA~GG 236 (891)
+|.+|..
T Consensus 180 ~De~y~~ 186 (356)
T PRK08056 180 LDEAFID 186 (356)
T ss_pred Eecchhc
Confidence 9999944
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.007 Score=71.25 Aligned_cols=86 Identities=7% Similarity=0.146 Sum_probs=66.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-+.+.....+...|.+++.++.. +++.+|+++|++.+++. +.+|+++.-+|.||.+-+ +++|++
T Consensus 158 Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~------~~~v~i~nP~NPTG~v~s~e~l~~i~~ 231 (462)
T PLN02187 158 ILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADEN------TVAMVVINPNNPCGNVYSHDHLKKVAE 231 (462)
T ss_pred EEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCC------cEEEEEeCCCCCCCCccCHHHHHHHHH
Confidence 5555555555555566677799988874 46789999999887543 346677778899999876 788889
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|++++++|.+|-+|+.
T Consensus 232 ~a~~~~i~iI~DE~Y~~ 248 (462)
T PLN02187 232 TARKLGIMVISDEVYDR 248 (462)
T ss_pred HHHHCCCEEEEeccccc
Confidence 99999999999999944
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0018 Score=73.19 Aligned_cols=235 Identities=11% Similarity=0.050 Sum_probs=133.4
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ ++.|+++++..++.+.-. .+.-.|++..-........+...|++++.+|.++++.+|
T Consensus 79 ~I~--it~Gs~~~i~~~~~~~~~------------------~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~ 138 (354)
T PRK04635 79 QIL--TSRGADEAIELLIRAFCE------------------PGQDSIACFGPTYGMYAISAETFNVGVKALPLTADYQLP 138 (354)
T ss_pred HEE--EeCCHHHHHHHHHHHhcC------------------CCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCC
Confidence 566 788999988876654210 011235555555566667778889999999998889999
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhh---hhcCC--------CCcc--------EEEEcC
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYR---KSQGI--------EYAD--------SFNVNV 589 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~---~ldGi--------~~aD--------SIs~d~ 589 (891)
++.+++ +. +...++++ +-.|+.. |.+ -+|.. ...+ -+.-++
T Consensus 139 ~~~l~~-~~-----~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~ 212 (354)
T PRK04635 139 LDYIEQ-LD-----GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTL 212 (354)
T ss_pred HHHHHh-cc-----CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEech
Confidence 999873 32 11223333 2345554 111 01110 0001 134478
Q ss_pred cccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH---HHhhHHHHHHH
Q psy852 590 NKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY---GLSGLQKYIRR 665 (891)
Q Consensus 590 HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l---G~~G~~~~i~~ 665 (891)
+|+++ ...-+|+++..++ .+.........| +. + ...+..++..+ |.+.+++.++.
T Consensus 213 SK~~~l~GlRlG~~i~~~~-~~~~l~~~~~~~--------------~~--~----~~~~~~a~~~l~~~~~~~~~~~~~~ 271 (354)
T PRK04635 213 SKAFALAGARCGFTLANEE-LIEILMRVIAPY--------------PV--P----LPVSEIATQALSEAGLARMKFQVLD 271 (354)
T ss_pred HHHhhhhHHHHhhhhCCHH-HHHHHHhhcCCC--------------CC--C----HHHHHHHHHHHhcccHHHHHHHHHH
Confidence 89876 3355777766432 222111111111 11 1 11222233333 33445556666
Q ss_pred HHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCC
Q psy852 666 HCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKR 744 (891)
Q Consensus 666 ~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT 744 (891)
..+.++++.+.|++.+++++. ++..+.+.++++ ....+.+.|.+.|+.+...........+ ++++ +
T Consensus 272 ~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~---------~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~---~ 338 (354)
T PRK04635 272 LNAQGARLQAALSMYGGAKVL-EGNGNYVLAKFD---------DVDAVFKALWDAGIVARAYKDPRLANCIRFSFS---N 338 (354)
T ss_pred HHHHHHHHHHHHHhCCCceEC-CCCCcEEEEECC---------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---C
Confidence 777788999999988777765 445555556653 1346777888889875433222223456 8875 7
Q ss_pred HHHHHHHHHHHHH
Q psy852 745 KDDLAYKRSFFVR 757 (891)
Q Consensus 745 ~edId~li~~L~e 757 (891)
.+|+++++++|++
T Consensus 339 ~e~~~~l~~al~~ 351 (354)
T PRK04635 339 RAETDKLIGLIRN 351 (354)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999975
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00024 Score=78.32 Aligned_cols=118 Identities=13% Similarity=0.112 Sum_probs=81.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC------CCcC
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK------NSLR 542 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~------G~mD 542 (891)
++|+|++|..++.+.-. +.-.|+++..+|.|+..++.+.|.+++.++++.+ +.+|
T Consensus 81 ~~Gst~a~~~~l~al~~-------------------~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~ 141 (294)
T cd00615 81 VNGTSSSNKAVILAVCG-------------------PGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIP 141 (294)
T ss_pred cCcHHHHHHHHHHHcCC-------------------CCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcCCCCC
Confidence 56778888877665311 2235888899999999999988998888877432 4799
Q ss_pred HHHHHHHHHhhhhcCCccEEEEe--cCCccc--------hhhh-----hcC-----------------CCCccEEEEcCc
Q psy852 543 GATLRQVMQQDETMGYIPFFVST--TLGTTS--------CYRK-----SQG-----------------IEYADSFNVNVN 590 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vva--taGTT~--------c~~~-----ldG-----------------i~~aDSIs~d~H 590 (891)
+++|++++++... ...++++. ..|+.. |+++ +|+ ...+|.+..++|
T Consensus 142 ~~~l~~~l~~~~~--~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~h 219 (294)
T cd00615 142 PETFKKALIEHPD--AKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTH 219 (294)
T ss_pred HHHHHHHHHhCCC--ceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchh
Confidence 9999999976321 11222221 134433 4331 221 135899999999
Q ss_pred ccCCcccccEEEEEeCC
Q psy852 591 KWLLTAFDSSCLWVADR 607 (891)
Q Consensus 591 K~L~~P~g~G~llvR~~ 607 (891)
|++.+|-++|++++++.
T Consensus 220 K~l~g~~~~~~l~~~~~ 236 (294)
T cd00615 220 KTLPALTQGSMIHVKGD 236 (294)
T ss_pred cccchHhHHHHHHhCCC
Confidence 99998888888888765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0044 Score=69.71 Aligned_cols=217 Identities=12% Similarity=0.018 Sum_probs=139.4
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCC--CCCCcCHHHHHHHHHhhhhcCC-ccEEEEec----CCccc---------
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGY-IPFFVSTT----LGTTS--------- 571 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~mD~~~Le~aI~~d~~~g~-ip~~Vvat----aGTT~--------- 571 (891)
.|++..-.|......+...|.+++.+|.+ .++.+|+++|++.+++...++. ..++++.+ .|++.
T Consensus 95 ~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~ 174 (363)
T PF00155_consen 95 TVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELA 174 (363)
T ss_dssp EEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHH
T ss_pred cceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchh
Confidence 58888899999999999999999999864 7899999999999999766553 33444333 34433
Q ss_pred --hhhh-------------hcC----------C-CCc-cEEEEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccc
Q psy852 572 --CYRK-------------SQG----------I-EYA-DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQ 622 (891)
Q Consensus 572 --c~~~-------------ldG----------i-~~a-DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~ 622 (891)
|.++ ..+ + ... .-+.-+..|.++.| .-.|++++ ++.... .+. ....+
T Consensus 175 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~-~l~~~~~~~-- 250 (363)
T PF00155_consen 175 ELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVA-PPELIE-RLRRFQRSG-- 250 (363)
T ss_dssp HHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEE-EHHHHH-HHHHHHHHT--
T ss_pred hhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccc-hhhhhh-hhhhccccc--
Confidence 2220 001 1 112 25777899988877 56888888 443222 211 11011
Q ss_pred cCCCCCccccCCcccccccccchHHHH---HHHHHHH--hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEE
Q psy852 623 HGHEGAIDYRHWGIPLSRRFRSLKLWF---VIRTYGL--SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFR 697 (891)
Q Consensus 623 ~~~e~~~~~~~~ti~~SRr~~aL~lW~---~L~~lG~--~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr 697 (891)
. . .++.+.+ .+...+. +-+++..++..++++++.+.|++. ++.+..++ .+.+++.
T Consensus 251 ------------~---~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~ 310 (363)
T PF00155_consen 251 ------------L---S---SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPE-AGFFLWV 310 (363)
T ss_dssp ------------T---S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHS-BSSEEEE
T ss_pred ------------c---c---cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeecc-CccEEEE
Confidence 0 0 1122222 2222232 256777778888999999999887 88887655 5555444
Q ss_pred ecCCcchhhhhhHHHHHHHHHhC-CcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 698 LRSENNLIADQNNRKLLEDINAS-GRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 698 ~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
..+. ....++.+.|.++ |+....+........+ +++ ...++++++++++.|
T Consensus 311 ~~~~------~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 311 RLDP------NDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp EESH------HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred Eccc------chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 3221 1467888899887 9886655443336667 998 677999999999765
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0015 Score=75.31 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=97.3
Q ss_pred EEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCHHHHHHHHHhhhh--------------------------cC
Q psy852 508 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDET--------------------------MG 557 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~--------------------------~g 557 (891)
.|+++...|.+....+. -.|++++.++. .|++.++++|+++++ .|
T Consensus 103 ~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g 177 (395)
T PRK08114 103 HVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP-----LIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVN 177 (395)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhC
Confidence 47777778877766653 24777777764 356667776654321 11
Q ss_pred -CccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcc--cccEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 558 -YIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTA--FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 558 -~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P--~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
.++++|.+|.++....+ ... -+||.+..+.|||+++| ...|+++.+ ++.... +... .+ ..
T Consensus 178 ~g~~lvVDnT~a~p~~~~-pl~-~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~-l~~~-~~------------~~ 240 (395)
T PRK08114 178 PDAVIMIDNTWAAGVLFK-ALD-FGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQ-LREN-SY------------LM 240 (395)
T ss_pred CCCEEEEECCCccccccC-HHH-cCCcEEEEcCcccccCCCcceeEEEEcC-HHHHHH-HHHH-HH------------hc
Confidence 12223333322221110 000 24999999999999999 477866543 322111 1100 00 00
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-C-----C-----------ceeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-D-----V-----------RLGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~-----~-----------~~~iV~Fr 697 (891)
+--..+...|..++ |.+-+.-++++..++|..+++.|+++|.++-+. | | -.++++|.
T Consensus 241 ----G~~~~p~~a~l~~r--gl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~ 314 (395)
T PRK08114 241 ----GQMVDADTAYMTSR--GLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFV 314 (395)
T ss_pred ----cCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 11233455665544 778888899999999999999999999876332 1 1 13699999
Q ss_pred ecC
Q psy852 698 LRS 700 (891)
Q Consensus 698 ~~~ 700 (891)
+++
T Consensus 315 l~~ 317 (395)
T PRK08114 315 LKK 317 (395)
T ss_pred ecC
Confidence 974
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0028 Score=72.12 Aligned_cols=244 Identities=9% Similarity=0.031 Sum_probs=137.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
+|+ +|+|+++++..++.+. .+ +.-.|++..-.+......+.+.|.+++.+|.+ +++.
T Consensus 83 ~i~--~t~G~~~al~~~~~~l----~~---------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 141 (378)
T PRK07682 83 EII--VTVGASQALDVAMRAI----IN---------------PGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFK 141 (378)
T ss_pred cEE--EeCChHHHHHHHHHHh----CC---------------CCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCC
Confidence 455 6888898887765442 10 11246667777777777778888888888875 3578
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------C----------CCCc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------G----------IEYA 582 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------G----------i~~a 582 (891)
+|+++|++++.+.. ..++++ +..|++. |.++ .| + ...-
T Consensus 142 ~d~~~l~~~~~~~~----~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 217 (378)
T PRK07682 142 VQPAQIEAAITAKT----KAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRER 217 (378)
T ss_pred CCHHHHHhhcCccc----EEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCC
Confidence 99999999886531 222232 3456553 3221 01 1 0011
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhH
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGL 659 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~ 659 (891)
.-+.-+..|.++.| .-+|+++..++ +.+.+.....|. .+ ....+.+.++...+ |...+
T Consensus 218 ~i~~~S~SK~~~~~GlR~G~~~~~~~--~i~~l~~~~~~~-----------~~------~~~~~~q~a~~~~l~~~~~~~ 278 (378)
T PRK07682 218 TILISGFSKGFAMTGWRLGFIAAPVY--FSEAMLKIHQYS-----------MM------CAPTMAQFAALEALRAGNDDV 278 (378)
T ss_pred EEEEecCcccccChhhhhhhhhcCHH--HHHHHHHHHHhh-----------cc------CCCHHHHHHHHHHHhCChHHH
Confidence 22344567877654 33677765332 222211000000 00 01123344444444 22335
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeE-EEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCeE
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGL-VCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~i-V~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~~ 735 (891)
++..++..+.++++.+.|++. ++++.. |+.+. ++..+.+. +....++.+.|. +.|+.+..+... .+...
T Consensus 279 ~~~~~~~~~~~~~~~~~L~~~-~~~~~~-p~g~~~~~~~~~~~-----~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~ 351 (378)
T PRK07682 279 IRMRDSYRKRRNFFVTSFNEI-GLTCHV-PGGAFYAFPSISST-----GLSSEEFAEQLLLEEKVAVVPGSVFGESGEGF 351 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCccCC-CCeeEEEEEeccCC-----CCCHHHHHHHHHHhCCEEEcCchhhCcCCCCe
Confidence 666667778888899999886 666543 44443 33334322 113457787765 678875544432 23456
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ ++++. +.+++++.++.|+++.
T Consensus 352 iRis~~~--~~~~l~~~l~~l~~~l 374 (378)
T PRK07682 352 IRCSYAT--SLEQLQEAMKRMKRFV 374 (378)
T ss_pred EEEEeCC--CHHHHHHHHHHHHHHH
Confidence 6 88874 5889999998888765
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0023 Score=73.01 Aligned_cols=246 Identities=13% Similarity=0.057 Sum_probs=136.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC---C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK---N 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~---G 539 (891)
+|+ +|+|+++++..++.+. .. +.-.|++..-.|.....++.+.|.+++.+|.+++ +
T Consensus 87 ~i~--~t~G~~~al~~~~~~~----~~---------------~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 145 (387)
T PRK07777 87 EVL--VTVGATEAIAAAVLGL----VE---------------PGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGF 145 (387)
T ss_pred cEE--EeCCcHHHHHHHHHHh----cC---------------CCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCC
Confidence 355 6889999987665432 11 1124666666777777788888889999998654 5
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------C-----------CC
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------G-----------IE 580 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------G-----------i~ 580 (891)
.+|+++|++++.+.. ..++++ +..|++. |.++ +| + ..
T Consensus 146 ~~d~~~l~~~~~~~~----~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~ 221 (387)
T PRK07777 146 ALDLDALRAAVTPRT----RALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMR 221 (387)
T ss_pred cCCHHHHHHhcCccc----EEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCc
Confidence 699999999886531 122332 3356543 3221 11 1 11
Q ss_pred CccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHh
Q psy852 581 YADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLS 657 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~ 657 (891)
..+-+..+++|.++.| .-+|+++...+ +.+.+.....|.. +. .+.. .+..+...+ +..
T Consensus 222 ~~~i~~~S~SK~~g~~GlRiG~~~~~~~--l~~~~~~~~~~~~-----------~~--~~~~----~q~~~~~~l~~~~~ 282 (387)
T PRK07777 222 ERTVTISSAAKTFNVTGWKIGWACGPAP--LIAAVRAAKQYLT-----------YV--GGAP----FQPAVAHALDHEDA 282 (387)
T ss_pred CcEEEEeechhhccCcCceeEEEecCHH--HHHHHHHHHhhcc-----------cC--CCCH----HHHHHHHHHhCCcH
Confidence 1344567799998867 33787765432 2222211111110 00 0111 111111112 223
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc-----
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE----- 731 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~----- 731 (891)
-+.+..+...+.++++.+.|++. ++++..+.....+++++++.+ ......+.+.|. +.|+.+..+....
T Consensus 283 ~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~ 357 (387)
T PRK07777 283 WVAALRDSLQAKRDRLAAGLAEA-GFEVHDSAGTYFLCADPRPLG----YDDGTEFCRALPERVGVAAIPMSVFYDPADA 357 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCccCCCcceEEEecccccC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCcC
Confidence 34455566677888888888875 566554433345555654321 113467888886 4688755443221
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+...+ ++++. .++++++.++.|.++.
T Consensus 358 ~~~~~Ri~~~~--~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 358 WNHLVRFAFCK--RDDTLDEAIRRLRALR 384 (387)
T ss_pred CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 12356 87763 6889999988887654
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0042 Score=76.63 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=82.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CC---CCcC-
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DK---NSLR- 542 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~---G~mD- 542 (891)
+.|+|-+|..++.++-. +.-.|++...+|-|+..++.+.|...+.+++. +. |.++
T Consensus 227 vNGST~gn~a~i~a~~~-------------------~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi~~~i~~ 287 (755)
T PRK15029 227 VVGTSGSNRTIMQACMT-------------------DNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGIIGPIYP 287 (755)
T ss_pred eCChhHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCc
Confidence 34667777766655321 22259999999999999999999988888653 22 4455
Q ss_pred ----HHHHHHHHHhhhh----cCCccEEEEecCCccc------------hhh-------------h------h---cCC-
Q psy852 543 ----GATLRQVMQQDET----MGYIPFFVSTTLGTTS------------CYR-------------K------S---QGI- 579 (891)
Q Consensus 543 ----~~~Le~aI~~d~~----~g~ip~~VvataGTT~------------c~~-------------~------l---dGi- 579 (891)
++.++++|++... .+..|..|+.|.-|.. |++ | + .++
T Consensus 288 ~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~ 367 (755)
T PRK15029 288 QEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMR 367 (755)
T ss_pred cccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECccccccccCcccccccccc
Confidence 9999999976421 2234556666554443 221 1 1 223
Q ss_pred ------CCcc-EEEEcCcccCCcccccEEEEEeCC
Q psy852 580 ------EYAD-SFNVNVNKWLLTAFDSSCLWVADR 607 (891)
Q Consensus 580 ------~~aD-SIs~d~HK~L~~P~g~G~llvR~~ 607 (891)
.+|| .++-|.||.|.+--.++++.+++.
T Consensus 368 ~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~ 402 (755)
T PRK15029 368 GEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG 402 (755)
T ss_pred ccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence 4588 888999999999999999999765
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0051 Score=70.56 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=44.5
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
|+++|++.+.+. +.+|++.-..+.+|.+-| +++|.++|++||+++++|-++.|+.
T Consensus 172 d~~~l~~~~~~~------~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 230 (398)
T PRK03244 172 DVDALAAAVDDD------TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIG 230 (398)
T ss_pred CHHHHHHhhcCC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence 789998877422 345666666889999987 9999999999999999999997643
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00039 Score=79.24 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=71.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|+++.-++.+....+...|.+++.++++.+ ..+|+++|++.+... +-+|+++..+|.||.+-+ +++|++
T Consensus 107 Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~------~kli~i~~p~NPtG~~~~~~~l~~i~~ 180 (373)
T PRK07324 107 VISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPN------TKLICINNANNPTGALMDRAYLEEIVE 180 (373)
T ss_pred EEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCC------CcEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 666666777777777777789999999754 458999998877543 347788899999999988 899999
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++|+++++|.+|.++
T Consensus 181 ~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 181 IARSVDAYVLSDEVYRPL 198 (373)
T ss_pred HHHHCCCEEEEEcccccc
Confidence 999999999999999653
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0036 Score=71.60 Aligned_cols=290 Identities=12% Similarity=0.041 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEeccc
Q psy852 435 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKE 514 (891)
Q Consensus 435 ~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~ 514 (891)
...|.++.++..+.-+++.+. . ++.+++- ++++||.+.=.++.- ..++ .+..+++++.-
T Consensus 34 s~~F~~i~~e~~~~L~~l~~~-~--~~~~v~~-l~GsGT~a~Eaa~~n----l~~~-------------~g~~vLv~g~F 92 (374)
T TIGR01365 34 SKLGKEKLAEAIKKTREMLGV-P--ADYLIGI-VPASDTGAVEMALWS----MLGC-------------RGVDVLAWESF 92 (374)
T ss_pred CHHHHHHHHHHHHHHHHHhCC-C--CCcEEEE-ECCchHHHHHHHHHH----cCCC-------------CCCeEEEECHH
Confidence 456677777777777666552 1 2344442 466776443322221 1110 01124444433
Q ss_pred chHHHHHHHHHcCc-eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec--CCccc-----hhh------hhcC--
Q psy852 515 AHSCVEKAAMMAFV-RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT--LGTTS-----CYR------KSQG-- 578 (891)
Q Consensus 515 aH~Sv~Kaa~l~gv-~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat--aGTT~-----c~~------~ldG-- 578 (891)
.+--..+.|...|+ ++..+..+..-.+|++.++. ++ . ..++-++ .|... +.. -+|+
T Consensus 93 G~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~--~~----~--v~~vhnETSTGv~npv~~i~~~~~~~lliVDavS 164 (374)
T TIGR01365 93 GKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF--KN----D--VVFTWNGTTSGVRVPNGDFIPADREGLTICDATS 164 (374)
T ss_pred HHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC--CC----C--EEEecCCCchheeccccccccccCCCcEEEEccc
Confidence 33333355665677 57888777667789999873 11 1 1122111 12221 111 1222
Q ss_pred --------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCC-----CccccCCCCCccccCCccccccccc-c
Q psy852 579 --------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP-----LYLQHGHEGAIDYRHWGIPLSRRFR-S 644 (891)
Q Consensus 579 --------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~-----~Yl~~~~e~~~~~~~~ti~~SRr~~-a 644 (891)
++.+|-+..+.+|.+++|-|.|++.++++..-. .-.... .|+.-.....+.. ... ...-++- +
T Consensus 165 s~g~~~l~~d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~-~~~~~~y~~~~~~~~~~~~~~~~~-~~~-~~~t~~TP~ 241 (374)
T TIGR01365 165 AAFAQDLDYHKLDVVTFSWQKVLGGEGAHGMLILSPRAVAR-LESYTPAWPLPKIFRLTKGGKLNK-KIF-EGSTINTPS 241 (374)
T ss_pred hhcCCCCChhHCcEEEEechhccCCCCceEEEEECHHHHHH-HhhcCCCCCChhhhccccccchhh-hhh-cCCCCCChH
Confidence 234899999999999999999999999875321 111011 1221100000000 000 0000111 1
Q ss_pred -hHHHHHHHHH---HHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-C--c-eeEEEEEecCCcch----hhhh-hH
Q psy852 645 -LKLWFVIRTY---GLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISND-V--R-LGLVCFRLRSENNL----IADQ-NN 710 (891)
Q Consensus 645 -L~lW~~L~~l---G~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~--~-~~iV~Fr~~~~~~~----~~d~-ln 710 (891)
..++..++.+ -.+ |++++++++.++++.+.+.+++.+.++++.+ + . ..+++|++.+.+-. +.+. ..
T Consensus 242 v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~ 321 (374)
T TIGR01365 242 MLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFA 321 (374)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHH
Confidence 2334443333 354 8999999999999999999999876777753 2 2 34677887432110 1011 14
Q ss_pred HHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 711 RKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 711 ~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
.++.+.|.++|+.+-.+.......++ |......+.+||+.+++.|.
T Consensus 322 ~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 322 KELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred HHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHH
Confidence 67888888889753322222222445 77667889999999999886
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=77.75 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=74.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-++.+....+...|.+++.|+++++ +.+|+++|++.+.+..+++..+-+|+++.-+|.||.+-+ +++|+
T Consensus 165 ~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~ 244 (481)
T PTZ00377 165 GVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEII 244 (481)
T ss_pred EEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHH
Confidence 3777777788887777777889999998753 479999999999865444434555555567899999988 88899
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|++++++|.+|-+|+.
T Consensus 245 ~~a~~~~~~iI~De~Y~~ 262 (481)
T PTZ00377 245 KFCYEKGIVLMADEVYQE 262 (481)
T ss_pred HHHHHCCCEEEEehhhHh
Confidence 999999999999999953
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00085 Score=76.97 Aligned_cols=88 Identities=10% Similarity=-0.024 Sum_probs=69.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
.|+++.-++......+...+.+++.+++|++ +.+|+++|++.+++. +-+|+++..+|.+|.+-| +++|++
T Consensus 122 ~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~~~~~~~~l~~ 195 (394)
T PRK06836 122 EVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPK------TKAVIINSPNNPTGVVYSEETLKALAA 195 (394)
T ss_pred EEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcC------ceEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 3667777777776666666789999999876 789999999988654 346667778999999977 556666
Q ss_pred HHHH------cCCceeeeccccCC
Q psy852 220 VAKE------FDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~------~~~~lHvDaA~GG~ 237 (891)
+|++ +++++.+|.+|+.+
T Consensus 196 la~~~~~~~~~~~~ii~De~y~~~ 219 (394)
T PRK06836 196 LLEEKSKEYGRPIYLISDEPYREI 219 (394)
T ss_pred HHHHhhhccCCCeEEEEecccccc
Confidence 7888 89999999999653
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0044 Score=70.99 Aligned_cols=180 Identities=12% Similarity=0.103 Sum_probs=108.3
Q ss_pred EEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c 572 (891)
.|+++...|.+..+.+ ...|++++.++.+ |+++++++|++.+ ..+++.. ..|... |
T Consensus 87 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~~~le~~i~~~t----klv~le~psnptg~v~dl~~I~~la 157 (378)
T TIGR01329 87 EIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT-----DLDKVKAALGPKT----KLVLLESPTNPLQKIVDIRKISEMA 157 (378)
T ss_pred EEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCcCc----eEEEEECCCCCCCeeecHHHHHHHH
Confidence 4777777787765543 3468888888873 8899998887432 1223222 223322 3
Q ss_pred hhh-----hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ +|+ + -++|.+..++|||+++|-+ .|+++++++..... +.. +...
T Consensus 158 ~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~-~~~---~~~~----------- 222 (378)
T TIGR01329 158 HAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKK-VYF---LQNS----------- 222 (378)
T ss_pred HHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHH-HHH---HHHh-----------
Confidence 331 222 1 2589999999999999977 88888877643221 110 0000
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEe-CC-----C-----------ceeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS-ND-----V-----------RLGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil-~~-----~-----------~~~iV~Fr 697 (891)
.+-....+..|.. ..+.+.+..++++...++..+++.|+++|.+.-+ -+ | ..++++|.
T Consensus 223 ---~G~~~~~~~a~l~--~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~ 297 (378)
T TIGR01329 223 ---TGSGLAPFDCWLL--LRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFE 297 (378)
T ss_pred ---cCCcCCHHHHHHH--HccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEE
Confidence 0111112233443 3466788889999999999999999988776322 11 1 13799999
Q ss_pred ecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 698 LRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 698 ~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
+.+. ....++.+.|..-++
T Consensus 298 ~~~~------~~~~~~~~~L~~~~i 316 (378)
T TIGR01329 298 TGSV------ALSKRLVEATKLFSI 316 (378)
T ss_pred ECCH------HHHHHHHHhCcCccc
Confidence 9321 235577777755443
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=74.86 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=71.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-C-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-K-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-++.....++...|.+++.|+++. + ..+|+++|++++.+.. -+++++.-+|.||.+-| +++|+
T Consensus 89 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~p~NPtG~~~~~~~~~~l~ 162 (350)
T TIGR03537 89 RVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEET------KIVWINYPHNPTGATAPRSYLKETI 162 (350)
T ss_pred eEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhcc------EEEEEeCCCCCcCcccCHHHHHHHH
Confidence 377777788888888888888999999973 3 4589999999886542 35666678999999888 88999
Q ss_pred HHHHHcCCceeeecccc
Q psy852 219 PVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~G 235 (891)
++|+++++++.+|.+|+
T Consensus 163 ~~a~~~~~~ii~De~y~ 179 (350)
T TIGR03537 163 AMCREHGIILCSDECYT 179 (350)
T ss_pred HHHHHcCcEEEEecccc
Confidence 99999999999999995
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.006 Score=72.74 Aligned_cols=86 Identities=10% Similarity=0.007 Sum_probs=70.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-++......+.+.|.+++.++++++ +.+|+++|++.+...+ -+|+++..+|.||.+-+ +++|+
T Consensus 234 ~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~------k~i~i~nP~NPTG~v~~~~~l~~i~ 307 (517)
T PRK13355 234 EVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRT------KAIVIINPNNPTGALYPREVLQQIV 307 (517)
T ss_pred EEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCc------eEEEEECCCCCCCcCcCHHHHHHHH
Confidence 3677777777777777777889999998754 6799999999886543 36666778999999988 88899
Q ss_pred HHHHHcCCceeeecccc
Q psy852 219 PVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~G 235 (891)
++|++++++|.+|-+|+
T Consensus 308 ~~a~~~~~~ii~DE~Y~ 324 (517)
T PRK13355 308 DIAREHQLIIFSDEIYD 324 (517)
T ss_pred HHHHHcCcEEEEehhhh
Confidence 99999999999999994
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=76.69 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=69.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~ 218 (891)
.|+++.-++......+...|.+++.+++++ ++.+|+++|++.+.+. +-+|+.+..+|.||.+- .+++|+
T Consensus 130 ~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~p~NPtG~~~s~~~~~~l~ 203 (412)
T PTZ00433 130 NILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDR------TKALIMTNPSNPCGSNFSRKHVEDII 203 (412)
T ss_pred EEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccC------ceEEEEeCCCCCCCcccCHHHHHHHH
Confidence 366667778778878877788999999864 4689999999887653 23566777899999864 577889
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|++++++|++|-+|+.+
T Consensus 204 ~~a~~~~~~ii~De~y~~~ 222 (412)
T PTZ00433 204 RLCEELRLPLISDEIYAGM 222 (412)
T ss_pred HHHHHcCCeEEEecccccc
Confidence 9999999999999999543
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0031 Score=72.40 Aligned_cols=118 Identities=16% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 580 EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
.++|.+..+.+|+++++-+ .|+++.+++ .+...... .+. .++ -...++-.|..++ |.+
T Consensus 196 ~g~Div~~S~sK~l~g~g~~~gG~v~~~~~-~i~~~~~~----~~~---------~~g----~~~~~~~a~l~~~--~L~ 255 (386)
T PRK06767 196 LGCDAVVHSATKYIGGHGDVVAGVTICKTR-ALAEKIRP----MRK---------DIG----GIMAPFDAWLLLR--GLK 255 (386)
T ss_pred cCCcEEEecCcceecCCCCceeEEEEeChH-HHHHHHHH----HHH---------HhC----CCCCHHHHHHHHc--CCC
Confidence 3579999999999998876 466666543 23221110 000 000 0112344565544 445
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------RLGLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
-+..++++..++++++++.|+++|+++.+.-| ..++|+|.+++. .....++.+.|...++
T Consensus 256 tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~-----~~~~~~f~~~l~~~~~ 326 (386)
T PRK06767 256 TLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGG-----KEETQAFINDLHFITI 326 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCC-----HHHHHHHHHhCCccEE
Confidence 66678899999999999999999999865422 247999999642 2345677777765543
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0078 Score=69.69 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=102.5
Q ss_pred EEecccchHHH----HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hh
Q psy852 509 AYCSKEAHSCV----EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CY 573 (891)
Q Consensus 509 I~~S~~aH~Sv----~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~ 573 (891)
|+++...+... ...+...+++++.++. .|+++|++++++.+ ..+++. +-.|... |+
T Consensus 102 Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~~i~~~t----klV~l~~P~NPtG~v~dl~~I~~la~ 172 (405)
T PRK08776 102 LVVPHDAYGGSWRLFNALAKKGHFALITADL-----TDPRSLADALAQSP----KLVLIETPSNPLLRITDLRFVIEAAH 172 (405)
T ss_pred EEEccCCchHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCcCC----eEEEEECCCCCCCccCCHHHHHHHHH
Confidence 55555555542 2223345677777765 37888888886432 122332 2234432 33
Q ss_pred hh-----hc-----C-----C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 574 RK-----SQ-----G-----I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 574 ~~-----ld-----G-----i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
++ +| + + -++|-+..|+||++++|-+ .|+++.++++.... +.. ... ..+
T Consensus 173 ~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~-l~~----~~~---------~~g 238 (405)
T PRK08776 173 KVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQ-LVW----WAN---------ALG 238 (405)
T ss_pred HcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHH-HHH----HHH---------hcC
Confidence 21 11 1 1 2579999999999998865 57777766543222 110 000 001
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEEe
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFRL 698 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr~ 698 (891)
. ....+..|..+ .|.+-+..++++..+++..+.+.|++.|.+.-+.-| -.++++|.+
T Consensus 239 ~----~~s~~~a~l~~--~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~ 312 (405)
T PRK08776 239 L----TGSPFDAFLTL--RGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFEL 312 (405)
T ss_pred C----CCCHHHHHHHH--hhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEE
Confidence 1 12345566665 477788999999999999999999998887533211 136999999
Q ss_pred cCCcchhhhhhHHHHHHHHHh
Q psy852 699 RSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 699 ~~~~~~~~d~ln~~L~~~L~~ 719 (891)
++. .+...++++.|..
T Consensus 313 ~~~-----~~~~~~f~~~l~l 328 (405)
T PRK08776 313 EGG-----EAAVRAFVDGLRY 328 (405)
T ss_pred cCC-----HHHHHHHHHhCCc
Confidence 742 1223455555543
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0058 Score=70.25 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=82.1
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH---HHh
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY---GLS 657 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l---G~~ 657 (891)
.|-+++ .|.++.+ +.+|+++.+++ +.+.+... .. ..+..+ ..+.+++++..+ -.+
T Consensus 248 pdi~~~--sK~lg~gg~~ig~~~~~~~--i~~~~~~~----~~---------~~t~~~----~~~~~aaa~aaL~~~~~~ 306 (396)
T PRK04073 248 PDMYIL--GKALGGGVFPISCVAANRD--ILGVFTPG----SH---------GSTFGG----NPLACAVSIAALEVLEEE 306 (396)
T ss_pred CCEEEe--cccccCCCCcceEEEEcHH--HHhhhcCC----CC---------CCCCCC----CHHHHHHHHHHHHHHHhc
Confidence 576665 6998877 67888887643 22222100 00 011111 123333333333 233
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDE 735 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~ 735 (891)
+ ..++..++.++|.+.|+++.. ..+.+ +.-+.+.+.+.. ....+.++|.+.|++.. + .+..+
T Consensus 307 ~---l~~~~~~~~~~l~~~L~~l~~-~~i~~~~~~g~~~~~~~~~--------~~~~~~~~l~~~Gv~~~-~---~~~~~ 370 (396)
T PRK04073 307 K---LPERSLELGEYFKEQLKEIDN-PMIKEVRGRGLFIGVELNE--------PARPYCEALKEEGLLCK-E---THETV 370 (396)
T ss_pred C---HHHHHHHHHHHHHHHHHhhcC-CcccceecceEEEEEEecc--------hHHHHHHHHHHCCeEEe-c---CCCCE
Confidence 3 345666788999999987522 12222 233456666531 24578888888998742 2 23346
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ |+++...|++|||++++.|++.+
T Consensus 371 iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 371 IRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEEECCcccCHHHHHHHHHHHHHHh
Confidence 7 99888899999999999998764
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.015 Score=66.01 Aligned_cols=224 Identities=17% Similarity=0.144 Sum_probs=139.9
Q ss_pred eEEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE----ecCCccc-------
Q psy852 507 LMAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS----TTLGTTS------- 571 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~------- 571 (891)
-.++++...|+.-....+ -+|+++..++.+ |.++|++. ++. . .+.|+ ++.|...
T Consensus 165 ~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~~~----~-~~gv~vQyP~~~G~~~~d~~~l~ 233 (450)
T COG0403 165 NKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESA-DDG----D-VFGVLVQYPNTFGIVEEDLRALI 233 (450)
T ss_pred ceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhc-ccc----C-eEEEEEecCCCCCccchhHHHHH
Confidence 359999999997766664 257888888886 88888887 331 1 22222 3455332
Q ss_pred --hhhh-------h----------cCCCCccEEEEcCcccCCcccc-----cEEEEEeCCccchhhhccCCCccccCCCC
Q psy852 572 --CYRK-------S----------QGIEYADSFNVNVNKWLLTAFD-----SSCLWVADRYKLTSALVVDPLYLQHGHEG 627 (891)
Q Consensus 572 --c~~~-------l----------dGi~~aDSIs~d~HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~~Yl~~~~e~ 627 (891)
++.+ . -|--+||=+.=|.+- +|+|++ +|.+-+|++. .+.+-+..-....+..+
T Consensus 234 ~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~Qr-fGvPmgfGGPhag~fA~~~~~--~R~mPGRlVG~S~D~~G 310 (450)
T COG0403 234 EAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQR-FGVPMGFGGPHAGYFAVKDEF--KRQMPGRLVGVSVDAAG 310 (450)
T ss_pred HHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcc-cCCCcCCCCcceeeeeEhHhH--hhcCCCceeeeeecCCC
Confidence 1110 0 123457888888877 445655 7788888763 22211111111111111
Q ss_pred CccccCCcc--c----cccccc------------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC-CcEEeCC
Q psy852 628 AIDYRHWGI--P----LSRRFR------------SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP-RFEISND 688 (891)
Q Consensus 628 ~~~~~~~ti--~----~SRr~~------------aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~-~~eil~~ 688 (891)
. ..+.+ + -=||-. |+..-..+-++|.+|++++.++.++++.+|.++|++.. +++++.+
T Consensus 311 ~---~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~ 387 (450)
T COG0403 311 K---RAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD 387 (450)
T ss_pred C---chhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc
Confidence 1 11222 1 112211 23334445578999999999999999999999999764 6888877
Q ss_pred CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 689 VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 689 ~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.-+..+.+++.. ..+..+..+....|+-... +... .+ +++...+|++||+.+++++...
T Consensus 388 ~fFdt~~v~~~~-------~~~~~l~~~~~~~G~~L~~---~~~~-~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 388 HFFDTFTVRVPE-------EVAEALLAAAIAGGINLRR---VDAD-TVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred cceeeEEEecch-------hHHHHHHHHHHhcCCceee---ecCC-ceEEEeecccCHHHHHHHHHHHhhh
Confidence 778899999852 3566777777777764211 1112 45 8888899999999999988754
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0013 Score=75.37 Aligned_cols=156 Identities=12% Similarity=0.112 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC-CccccccccCCCCCCCCcccc
Q psy852 33 VLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPN-DIDMNIEDYMTPANQPQSLGG 111 (891)
Q Consensus 33 ~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~-~~~~~~~~~~t~~~~~~~~~g 111 (891)
.+.+.+...+..+...|...+...++++.+.+++.+..|++-+ |+ ++ ..|+|
T Consensus 45 ~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~-------------~~~~I--------------~~t~G 97 (387)
T PRK07683 45 HVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYS-------------PESEI--------------IVTIG 97 (387)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------------CCCcE--------------EEeCC
Confidence 3444555554444334433445678888888898877776432 11 11 12455
Q ss_pred hhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhh
Q psy852 112 GVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDE 190 (891)
Q Consensus 112 Gt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~ 190 (891)
++ +.....+.. --. +...|+++.-+......++...|.+++.+++|++ ..+|.++|++.+.+.
T Consensus 98 ~~-~al~~~~~~-l~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~- 161 (387)
T PRK07683 98 AS-EAIDIAFRT-ILE-------------PGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEK- 161 (387)
T ss_pred hH-HHHHHHHHH-hCC-------------CCCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcC-
Confidence 54 222211111 111 1123666555544555556667889999999865 467889999887643
Q ss_pred hcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccC
Q psy852 191 TMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 191 ~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG 236 (891)
+.+|+++..+|.||.+ +++++|+++|+++|+++++|.+|+.
T Consensus 162 -----~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~ 205 (387)
T PRK07683 162 -----TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSE 205 (387)
T ss_pred -----ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccccc
Confidence 3466777889999998 4588899999999999999999954
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0072 Score=73.97 Aligned_cols=257 Identities=13% Similarity=0.021 Sum_probs=142.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH-HHHcCceEEEecCCC--C---CCcC
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA-AMMAFVRLKILEPDD--K---NSLR 542 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka-a~l~gv~v~~Vp~d~--~---G~mD 542 (891)
+.|.|-+|..++.++-. +.-.|++...+|-|+..+ +.+.|...+.+++.. . |.++
T Consensus 196 vNGTS~gn~a~i~a~~~-------------------~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi~g~I~ 256 (720)
T PRK13578 196 LNGTSASNKVVTNALLT-------------------PGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIGGID 256 (720)
T ss_pred eCChhHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccccCCcCCCC
Confidence 34667778877666321 223589999999999996 678899888887543 2 3456
Q ss_pred HHH-----HHHHHHhhh-h--cCCcc-EEEEecCCccc-------------hhh----hhc--------------C----
Q psy852 543 GAT-----LRQVMQQDE-T--MGYIP-FFVSTTLGTTS-------------CYR----KSQ--------------G---- 578 (891)
Q Consensus 543 ~~~-----Le~aI~~d~-~--~g~ip-~~VvataGTT~-------------c~~----~ld--------------G---- 578 (891)
++. ++++|++.. + ....| -+|+.|..|.. |+. ++| +
T Consensus 257 ~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~~llvDEAhgah~~F~p~~~~~p~~ 336 (720)
T PRK13578 257 AHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPL 336 (720)
T ss_pred hHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCCcEEEeCcchhhhccCcccccCChh
Confidence 544 999987751 1 11233 45555555544 111 011 1
Q ss_pred --CCCcc----EEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC-CCccccCCcccccccc----cchHH
Q psy852 579 --IEYAD----SFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE-GAIDYRHWGIPLSRRF----RSLKL 647 (891)
Q Consensus 579 --i~~aD----SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e-~~~~~~~~ti~~SRr~----~aL~l 647 (891)
-.++| .++-|.||.|.+--.++.+.+++.. + .++..|+....- ..+. -.+.|-+. .+|-+
T Consensus 337 al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~-i----~g~~~~v~~~r~~~al~----m~qSTSPsY~LmASLDv 407 (720)
T PRK13578 337 LLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNH-I----KGQARYCPHKRLNNAFM----LHASTSPFYPLFAALDV 407 (720)
T ss_pred hhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcc-c----ccccccCCHHHHHHHHH----HHcCCChHHHHHHHHHH
Confidence 14578 9999999999988888888887642 1 111122211000 0000 00011111 11222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHh-ccCCCcEEeCCC-------------------------------------
Q psy852 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKV-RRDPRFEISNDV------------------------------------- 689 (891)
Q Consensus 648 W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L-~~~~~~eil~~~------------------------------------- 689 (891)
...+. .|..| ++.+++.++++..+.++| +.+++|+++.+.
T Consensus 408 a~~~m-~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~ 485 (720)
T PRK13578 408 NAKMH-EGESG-RRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYA 485 (720)
T ss_pred HHHHH-HHhhC-HHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccccCcccccccccc
Confidence 11111 11122 445666777777777777 666778776421
Q ss_pred ------ceeEEEEEecCCcc-----hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 690 ------RLGLVCFRLRSENN-----LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 690 ------~~~iV~Fr~~~~~~-----~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
+..-|.+..++.+. ++..--...+.+.|.++|+. ....+.+.+ +-+....|++++++++++|.+
T Consensus 486 ~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~----~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~ 561 (720)
T PRK13578 486 EDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIV----PEKCDLNSILFLLTPAEDMAKLQQLVAMLAR 561 (720)
T ss_pred ccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCE----EEecCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 11112222222210 00000035677778778887 555555556 777888899999999999987
Q ss_pred HH
Q psy852 758 ML 759 (891)
Q Consensus 758 i~ 759 (891)
+.
T Consensus 562 f~ 563 (720)
T PRK13578 562 FE 563 (720)
T ss_pred HH
Confidence 64
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.02 Score=65.99 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=86.1
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|.+++ .|.++.=+++|+++.+++ +.+.+... .+ ..+.. +-+.......++|+.+.. .+
T Consensus 241 pDi~t~--~K~lggG~pigav~~~~~--i~~~~~~~----~~---------~~t~~-~~p~~~aaa~a~l~~~~~---~~ 299 (397)
T TIGR03246 241 PDILTS--AKALGGGFPIGAMLTTTE--IAAHLKVG----TH---------GTTYG-GNPLACAVAGKVLDLVNT---PE 299 (397)
T ss_pred CCEEEe--ehhhhCCcceeEEEEcHH--HHHhccCC----Cc---------CCCCC-CCHHHHHHHHHHHHHHhh---cc
Confidence 577754 787754467888888654 32222110 00 11111 112223333445554433 34
Q ss_pred HHHHHHHHHHHHHHHhccCC-CcEEeCCC--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 662 YIRRHCELAKLFEGKVRRDP-RFEISNDV--RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~-~~eil~~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
..++..++.++|.++|+++. .+.++.+. .-.++.+.+.+. .+.....+...|.+.|++... .+..++ +
T Consensus 300 l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~----~~~~~~~~~~~l~~~Gv~~~~----~g~~~lR~ 371 (397)
T TIGR03246 300 LLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEA----YQGKAKQFVNAAAEEGVIALI----AGPNVVRF 371 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCc----hhhHHHHHHHHHHHCCeEEee----cCCCEEEE
Confidence 56777788888888887742 12222221 123444444321 123456888899999988432 233567 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~ 759 (891)
++....|++|||++++.|++.+
T Consensus 372 ~p~~~~t~~~i~~~~~~l~~~l 393 (397)
T TIGR03246 372 APSLVISDDDIDEGLARFERAI 393 (397)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 8888899999999999998776
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.012 Score=66.94 Aligned_cols=239 Identities=10% Similarity=-0.009 Sum_probs=132.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++...+.+. . .+...|++..-.+......+...|++++.+|.++++.+|
T Consensus 90 ~i~--~t~G~~~~l~~~~~~~----~---------------~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 148 (371)
T PRK05166 90 RII--LGNGSEDLIAVICRAV----L---------------RPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFD 148 (371)
T ss_pred HEE--EcCCHHHHHHHHHHHh----c---------------CCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCC
Confidence 566 7788888876555432 1 012246666667777777778889999999999889999
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhh----hhcCC-----------------CCc--cE-
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYR----KSQGI-----------------EYA--DS- 584 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~----~ldGi-----------------~~a--DS- 584 (891)
+++|++++++.+ ..++++ +-.|++. |.+ .+|.+ ... ..
T Consensus 149 ~~~l~~~~~~~~----~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi 224 (371)
T PRK05166 149 LDALCAAVARAP----RMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWI 224 (371)
T ss_pred HHHHHHhhhcCC----CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEE
Confidence 999999987632 123333 2345544 110 00110 000 01
Q ss_pred EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-HhhHHHH
Q psy852 585 FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LSGLQKY 662 (891)
Q Consensus 585 Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~G~~~~ 662 (891)
+.-++.|.++.| .-+|+++..++.... .+..... .++ ...+.+.+++..+- ..-+++.
T Consensus 225 ~i~SfSK~~~l~GlRiG~~i~~~~~l~~-~~~~~~~-------------~~~------~~~~~q~~~~~~l~~~~~~~~~ 284 (371)
T PRK05166 225 VLRTFSKAYGLAGLRVGYGLVSDPELVG-LLDRVRT-------------PFN------VNGAAQAAALAALDDEEHLAKG 284 (371)
T ss_pred EEeechHhhhcchhheeeeecCCHHHHH-HHHHhcc-------------CCC------CCHHHHHHHHHHhcCHHHHHHH
Confidence 233456655533 335555544332221 1110000 001 11122222333332 2335555
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecC
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQE 741 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~ 741 (891)
.+...+..+++.+.|++. ++.+ .++..+-+.+++. . ..+++.+.|.++|+.+..+........+ +++.
T Consensus 285 ~~~~~~~r~~l~~~L~~~-g~~~-~p~~g~fl~~~~~-~-------~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~- 353 (371)
T PRK05166 285 VALALAERERLKKELAEM-GYRI-APSRANFLFFDAR-R-------PASAVAEALLRQGVIVKPWKQPGFETFIRVSIG- 353 (371)
T ss_pred HHHHHHHHHHHHHHHHHC-cCee-CCCcCCEEEEeCC-C-------CHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC-
Confidence 666777788889999886 5665 3445555555542 1 2467888988899875443322224455 7776
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 742 ~tT~edId~li~~L~ei~ 759 (891)
+.++.+++.++|+++.
T Consensus 354 --~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 354 --SPEENDHFVAALDKVL 369 (371)
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 5777888888887664
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0028 Score=73.17 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=97.3
Q ss_pred EEEecccchHHHHHH----HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Ka----a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c 572 (891)
.|+++...+.+.... +...|++++.++ .+|+++++++|++.+ ..+++. +..|... |
T Consensus 106 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~~~t----klV~lesp~NptG~v~dl~~I~~la 176 (398)
T PRK07504 106 HVVAARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVRPNT----KVFFLESPTNPTLEVIDIAAVAKIA 176 (398)
T ss_pred EEEEcCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcCcCc----eEEEEECCCCCCcEecCHHHHHHHH
Confidence 366666555543322 334577777775 378999998886532 122322 2234332 3
Q ss_pred hhh-----hcCC-----------CCccEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 573 YRK-----SQGI-----------EYADSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 573 ~~~-----ldGi-----------~~aDSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
+++ +|+. -++|.+..|+|||+++|- ..|.+++.++..+.+.+. .|++.
T Consensus 177 ~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~---~~~~~------------ 241 (398)
T PRK07504 177 NQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQ---DYFRH------------ 241 (398)
T ss_pred HHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHH---HHHHH------------
Confidence 321 2221 258999999999998874 345555555443322111 11110
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC------CCc-----------eeEEEEEe
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN------DVR-----------LGLVCFRL 698 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~------~~~-----------~~iV~Fr~ 698 (891)
.+.....+..|..++ |.+.+..++++..++++++.+.|+++|.+.-+. .|+ .++++|.+
T Consensus 242 --~g~~~s~~~A~~~l~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~ 317 (398)
T PRK07504 242 --TGPSLSPFNAWTLLK--GLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFEL 317 (398)
T ss_pred --hCCCCCHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEe
Confidence 011233455566654 667788899999999999999999998875321 221 46999999
Q ss_pred cC
Q psy852 699 RS 700 (891)
Q Consensus 699 ~~ 700 (891)
++
T Consensus 318 ~~ 319 (398)
T PRK07504 318 KG 319 (398)
T ss_pred CC
Confidence 64
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.002 Score=75.99 Aligned_cols=204 Identities=16% Similarity=0.133 Sum_probs=134.9
Q ss_pred CeEEEecCCCChHHHHHHHHcCCeEEEEec--CC----CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH
Q psy852 142 KLMAYCSKEAHSCVEKAAMMAFVRLKILEP--DD----KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA 215 (891)
Q Consensus 142 ~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~--d~----~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~ 215 (891)
...|++-..+|-|+..++.+.|..-+++.+ |+ -|.|+.+.+++++.+..... .++++|.+ |--|.+=+++
T Consensus 110 GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~---k~~vitnp-TYdGv~~n~~ 185 (557)
T COG1982 110 GDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE---KLAVITNP-TYDGVCYNLR 185 (557)
T ss_pred CCEEEecCCccHHHHHHHHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhChhhh---eeEEEecC-ccceEeecHH
Confidence 335899999999999998888877777765 34 36799999999988764221 36666666 6779999999
Q ss_pred HHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCc
Q psy852 216 EIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPF 295 (891)
Q Consensus 216 ~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (891)
+|.+.++.+++|+-+|-|.|-..-+++.
T Consensus 186 ~i~~~~~~~~a~v~~deah~~~~~~~~~---------------------------------------------------- 213 (557)
T COG1982 186 KIVELLHHYGAWVLYDEAHPAHFDFSPM---------------------------------------------------- 213 (557)
T ss_pred HHHHHHhhcCceEEhhhcCccccccccc----------------------------------------------------
Confidence 9999999999999999988432221110
Q ss_pred cchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCcc
Q psy852 296 VDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTA 375 (891)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p 375 (891)
.|+ ..+ -..+|.++-+.||.+.+=
T Consensus 214 ----------------------------------------------------l~~--~~~--~~~~~~~tqS~HK~l~al 237 (557)
T COG1982 214 ----------------------------------------------------LPE--SAL--NGGADFVTQSTHKLLAAL 237 (557)
T ss_pred ----------------------------------------------------Ccc--hhh--hcCceEEEechhhhhhhh
Confidence 011 000 014699999999987776
Q ss_pred CCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCC-hhHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHH
Q psy852 376 FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFV--IRTYGLSGLQKYIRRHCELAKLF 452 (891)
Q Consensus 376 ~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~-~~~l~~w~~--l~~~g~~G~~~ii~~~lelAr~l 452 (891)
--+|.+-+++..... .-..+-.|+.+. +..-|-. +++|-+ +. +...|+.-+++-+...++..+++
T Consensus 238 SQaS~iHv~~~~~~~-~~r~nea~~~h~----------STSPsY~l~ASlD~-Ar~~~~~~G~~l~~~~~~~~i~~r~~~ 305 (557)
T COG1982 238 SQASMIHVKDGRAVN-HERFNEALMMHQ----------STSPSYPLMASLDV-ARMQEGNAGRELWQEVIDEAIDFRKAL 305 (557)
T ss_pred hhhHHHhhCCCccCC-HHHHHHHHHHHc----------cCCchHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 667888888631110 000111111111 0011111 244544 22 22356666666799999999999
Q ss_pred HHhhccCCccccccCCC
Q psy852 453 EGKVRRDPRFEISNDVR 469 (891)
Q Consensus 453 ~~~L~~~~~~eVv~~it 469 (891)
.+.+.+.++|+++++..
T Consensus 306 ~~~~~~~~~~~~~~~~~ 322 (557)
T COG1982 306 RRLINEIGFFPVLQPEK 322 (557)
T ss_pred HHHHHhcCCeeeccccc
Confidence 99999999999998754
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0079 Score=69.20 Aligned_cols=86 Identities=9% Similarity=0.028 Sum_probs=61.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-.++.-..++...+...+.++++. .+.+|+++|++.+.+. +.+|+++..+|.||.+-+ +++|+
T Consensus 119 ~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~l~ 192 (402)
T PRK06107 119 EVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPR------TRWLILNAPSNPTGAVYSRAELRALA 192 (402)
T ss_pred EEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcC------ceEEEEECCCCCCCcCcCHHHHHHHH
Confidence 366655544444444554556777788753 3569999999887543 346666778999997765 56778
Q ss_pred HHHHHc-CCceeeecccc
Q psy852 219 PVAKEF-DVWLHVDGAYA 235 (891)
Q Consensus 219 ~i~~~~-~~~lHvDaA~G 235 (891)
++|+++ ++++.+|-+|+
T Consensus 193 ~~a~~~~~~~iI~De~y~ 210 (402)
T PRK06107 193 DVLLRHPHVLVLTDDIYD 210 (402)
T ss_pred HHHHHcCCeEEEEehhcc
Confidence 888998 99999999995
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.028 Score=64.40 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=81.6
Q ss_pred ccEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-++++ |+++.++ ++|+++.+++ +.+.+.... + ..+.. +-++.....-.+|+.+..+++.
T Consensus 240 pd~~~~s--K~l~~g~~~ig~v~~~~~--~~~~~~~~~-~------------~~t~~-~~~~~~~aa~~~l~~i~~~~~~ 301 (400)
T PTZ00125 240 PDIVLLG--KALSGGLYPISAVLANDD--VMLVIKPGE-H------------GSTYG-GNPLACAVAVEALEVLKEEKLA 301 (400)
T ss_pred CCEEEEc--ccccCCCcCcEEEEEcHH--HHhhccCCC-C------------CCCCC-cCHHHHHHHHHHHHHHHhcCHH
Confidence 4777765 9998776 8899888664 222111100 0 00111 1112222222334444444444
Q ss_pred HHHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 661 KYIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
+ +..++.+++.+.|++. +.+..+ .+...++.+.+.+.. ......+.++|.+.|+++ .+. +...+
T Consensus 302 ~---~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~v~~~~~~----~~~~~~~~~~l~~~Gv~v-~~~---~~~~l 369 (400)
T PTZ00125 302 E---NAQRLGEVFRDGLKELLKKSPWVKEI-RGKGLLNAIVFDHSD----GVNAWDLCLKLKENGLLA-KPT---HDNII 369 (400)
T ss_pred H---HHHHHHHHHHHHHHHHHhcCCCeEEE-ecccEEEEEEEccCc----chHHHHHHHHHHHCCeEE-eec---CCCEE
Confidence 3 3344566666666553 222212 223345555554211 123457888888889774 332 34566
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++++..+++++|+++++.|.+.+.
T Consensus 370 Ri~~~~~~~~~~i~~~l~~l~~~l~ 394 (400)
T PTZ00125 370 RFAPPLVITKEQLDQALEIIKKVLK 394 (400)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHH
Confidence 988888899999999999998764
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0083 Score=68.30 Aligned_cols=251 Identities=10% Similarity=0.005 Sum_probs=137.6
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++.+.-.+. +|+ +++|+++++..++.+.- .+...|++..-.++.....+.+.|.++
T Consensus 75 ~ia~~~~~~~~-~I~--it~G~~~~l~~~~~~~~-------------------~~gd~vlv~~p~y~~~~~~~~~~g~~~ 132 (369)
T PRK08153 75 ALAAHHGVAPE-NIM--VGEGIDGLLGLIVRLYV-------------------EPGDPVVTSLGAYPTFNYHVAGFGGRL 132 (369)
T ss_pred HHHHHhCCCHH-HEE--EcCCHHHHHHHHHHHhc-------------------CCCCEEEECCCcchHHHHHHHHcCCeE
Confidence 33344433333 566 67888887665544321 012246777777777777777788899
Q ss_pred EEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh--h-----h---------cC-CCCc
Q psy852 531 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR--K-----S---------QG-IEYA 582 (891)
Q Consensus 531 ~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~--~-----l---------dG-i~~a 582 (891)
+.+|.+.+ .+|+++|++.+.... ...+++++ -.|++. |.. + + ++ ....
T Consensus 133 ~~vp~~~~-~~~~~~l~~~~~~~~---~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~ 208 (369)
T PRK08153 133 VTVPYRDD-REDLDALLDAARREN---APLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPI 208 (369)
T ss_pred EEeeCCCC-CCCHHHHHHHhcccC---CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhh
Confidence 99998766 489998877765321 11223322 246654 110 0 0 11 0000
Q ss_pred -----c-EEEEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHH
Q psy852 583 -----D-SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 583 -----D-SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l 654 (891)
+ -+.-++.|.++.| .-+|+++... +.+ +.+. .... ++ ...+.++++...+
T Consensus 209 ~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~-~~~-~~l~~~~~~--------------~~------~s~~~q~~~~~~l 266 (369)
T PRK08153 209 DTDDPNVIRMRTFSKAYGLAGARVGYAIGAP-GTI-KAFDKVRNH--------------FG------MNRIAQAAALAAL 266 (369)
T ss_pred hhcCCCEEEEecchHhccCcchheeeeecCH-HHH-HHHHHhhcC--------------CC------CCHHHHHHHHHHh
Confidence 1 1233556666544 3345555422 211 1111 0000 01 1233444444444
Q ss_pred HH-hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCC
Q psy852 655 GL-SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQN 733 (891)
Q Consensus 655 G~-~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~ 733 (891)
.. +-+++..+...+..+++.+.|++. ++.+. +...+.+.+++... +.....+.++|.+.|+.+..+....+.
T Consensus 267 ~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~-----~~~a~~l~~~l~~~Gi~v~~p~~~~~~ 339 (369)
T PRK08153 267 KDQAYLAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRD-----GAFARAVLDGLIARDIFVRMPGVAPLD 339 (369)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCC-----cccHHHHHHHHHHCCeEEeeCCCCCCC
Confidence 32 224455556667778888888765 55543 44556666665321 235678899999999875334332233
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+ ++++ +++|+++++++|+++.
T Consensus 340 ~~iRis~~---~~~~~~~~~~al~~~~ 363 (369)
T PRK08153 340 RCIRVSCG---PDEELDLFAEALPEAL 363 (369)
T ss_pred CeEEEecC---CHHHHHHHHHHHHHHH
Confidence 456 8776 7899999999999876
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00061 Score=75.24 Aligned_cols=205 Identities=17% Similarity=0.230 Sum_probs=121.2
Q ss_pred CCChHHHHHH-HHcCCeEEEEec----------CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccc---cccCHH
Q psy852 150 EAHSCVEKAA-MMAFVRLKILEP----------DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCC---SFDNLA 215 (891)
Q Consensus 150 ~~H~Sv~kaa-~~~~~~v~~V~~----------d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~G---avDpl~ 215 (891)
..|+-.-++- ...|.-.+-|++ +=.|-+|++.|++.|++.-. ..+|+++....-|+..| ++.+++
T Consensus 131 N~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~-~nvp~I~~tiT~NsagGQpVSm~n~r 209 (471)
T COG3033 131 NYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGA-DNVPYIVLTITNNSAGGQPVSMANMK 209 (471)
T ss_pred cceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCc-ccCcEEEEEEeccccCCCcchHHhHH
Confidence 4566665554 233333333333 23688999999999987532 24566665555566555 568899
Q ss_pred HHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCc
Q psy852 216 EIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPF 295 (891)
Q Consensus 216 ~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (891)
++.++|++|++++..|+|- -+-+|.|++++.
T Consensus 210 ~v~~ia~ky~ipvv~Da~R----------------------------------faENaYFIk~rE--------------- 240 (471)
T COG3033 210 AVYEIAKKYDIPVVMDAAR----------------------------------FAENAYFIKQRE--------------- 240 (471)
T ss_pred HHHHHHHHcCCcEEeehhh----------------------------------hhhhhhhhhhcC---------------
Confidence 9999999999999999987 123455555542
Q ss_pred cchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCcc
Q psy852 296 VDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTA 375 (891)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p 375 (891)
..||| |-.-| |.. +-++++|.++.++-|=++++
T Consensus 241 ----------------------------~gYrd-----~sI~~--------Iar------Em~sYaD~~~mS~KKD~lvn 273 (471)
T COG3033 241 ----------------------------PGYRD-----WSIEE--------IAR------EMYSYADGCTMSAKKDGLVN 273 (471)
T ss_pred ----------------------------ccccc-----ccHHH--------HHH------HHHhhhhhheeeccccceec
Confidence 11221 10000 111 23468999999999999999
Q ss_pred CCceEEEEeccccch--hhcccCccccCCCCCCcccccccccCCCCChhHHH--HHHHHHHhcHHHHHHHHHHHHHHHHH
Q psy852 376 FDSSCLWVADRYKLT--SALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLK--LWFVIRTYGLSGLQKYIRRHCELAKL 451 (891)
Q Consensus 376 ~~~g~~~~r~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~--~w~~l~~~g~~G~~~ii~~~lelAr~ 451 (891)
.+ |+|.+||...+. .... .---++.+ +-.|+=--+|...+++ +.-+++ ..++++-++..+|
T Consensus 274 mG-Gfl~~~D~~~fDvy~~~~-~~~V~~eG------~~tYGgl~GrdmealAvGL~e~~~-------~~yl~~Rv~Qv~Y 338 (471)
T COG3033 274 MG-GFLCFKDDSFFDVYEECR-TLVVVQEG------FPTYGGLAGRDMEALAVGLREGVN-------FDYLAHRVAQVQY 338 (471)
T ss_pred cc-cEEEecCccHHHHHHHHH-hheEeecc------ccccCcccchhHHHHHHHHHHhcC-------cHHHHHHHHHHHH
Confidence 98 999999875321 1110 00011111 1122222234433333 222221 3567888888999
Q ss_pred HHHhhccCCccccccC
Q psy852 452 FEGKVRRDPRFEISND 467 (891)
Q Consensus 452 l~~~L~~~~~~eVv~~ 467 (891)
+.+.|.+ .|+.|+.|
T Consensus 339 L~~~l~~-~GVpi~~p 353 (471)
T COG3033 339 LADGLEE-AGVPIVQP 353 (471)
T ss_pred HHHHHHh-cCCeeEec
Confidence 9999987 46666644
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0084 Score=68.98 Aligned_cols=199 Identities=13% Similarity=0.126 Sum_probs=113.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~ 543 (891)
+++||++++..++.+. .+ +.-.|+++...|.+....+ ..+++++..++ ..|+
T Consensus 72 ~~~sg~~Ai~~~l~~l----~~---------------~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~ 127 (386)
T PRK08045 72 LTNTGMSAIHLVTTVF----LK---------------PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDE 127 (386)
T ss_pred EECCHHHHHHHHHHHH----cC---------------CCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCH
Confidence 5678888877766542 11 1124666666666433322 22445666553 2578
Q ss_pred HHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~P 596 (891)
+++++++++.+ ..+++.. ..|+.. |+++ +|. + -++|-+..+.|||+++|
T Consensus 128 e~l~~~l~~~t----klV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~ 203 (386)
T PRK08045 128 QALRAALAEKP----KLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGH 203 (386)
T ss_pred HHHHHhcccCC----eEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCC
Confidence 88888776532 1222221 123322 2221 111 1 25799999999999988
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|+++.++++.... +.....+ .+. ...++..|..++ |.+-+..++++..+++..++
T Consensus 204 ~d~~~G~vi~~~~~~~~~-l~~~~~~-------------~g~----~~~p~~~~l~~r--gl~tl~~R~~~~~~na~~la 263 (386)
T PRK08045 204 SDVVAGVVIAKDPDVVTE-LAWWANN-------------IGV----TGGAFDSYLLLR--GLRTLVPRMELAQRNAQAIV 263 (386)
T ss_pred CCceeEEEEeCcHHHHHH-HHHHHHh-------------cCC----CCCHHHHHHHHh--hhccHHHHHHHHHHHHHHHH
Confidence 87 67777766543221 1100001 011 123456676666 55568999999999999999
Q ss_pred HHhccCCCcEEeC------CC-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 675 GKVRRDPRFEISN------DV-----------RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 675 ~~L~~~~~~eil~------~~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+.|++.|.++-+. .| -.++++|.+++. .....++.+.|.-
T Consensus 264 ~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~-----~~~~~~f~~~l~~ 320 (386)
T PRK08045 264 KYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-----EQTLRRFLGGLSL 320 (386)
T ss_pred HHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCc-----HHHHHHHHHhccc
Confidence 9999999876432 11 136999999642 1223456666543
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0054 Score=71.19 Aligned_cols=233 Identities=15% Similarity=0.116 Sum_probs=130.8
Q ss_pred cccchHHHHHH-HHHcCceEEEecCC----------CCCCcCHHHHHHHHHhhhhcCCcc--EEEEe--cC-Cccc----
Q psy852 512 SKEAHSCVEKA-AMMAFVRLKILEPD----------DKNSLRGATLRQVMQQDETMGYIP--FFVST--TL-GTTS---- 571 (891)
Q Consensus 512 S~~aH~Sv~Ka-a~l~gv~v~~Vp~d----------~~G~mD~~~Le~aI~~d~~~g~ip--~~Vva--ta-GTT~---- 571 (891)
+...|++-..+ ..+.|..++-+++| .+|.||+++|+++|.+.... .++ .+++. .. |...
T Consensus 114 psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~-~~~lV~~e~t~N~~GG~pvs~~~ 192 (450)
T TIGR02618 114 PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGAD-KIPYICLAVTVNLAGGQPVSMAN 192 (450)
T ss_pred CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCc-ccCceEEEEecccCCCeeCCHHH
Confidence 45667666665 35555555555433 36999999999999864221 122 22222 23 4441
Q ss_pred -------hhh-----hhcC-----------------------------CCCccEEEEcCcccCCcccccEEEEEeCCccc
Q psy852 572 -------CYR-----KSQG-----------------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610 (891)
Q Consensus 572 -------c~~-----~ldG-----------------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L 610 (891)
|.+ ++|| ..++|++++|+||-.++|.| |++.+++++..
T Consensus 193 l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~ 271 (450)
T TIGR02618 193 MREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMF 271 (450)
T ss_pred HHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHH
Confidence 322 1111 24699999999999999994 45555887655
Q ss_pred hhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc
Q psy852 611 TSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR 690 (891)
Q Consensus 611 ~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~ 690 (891)
.++-.....| . .+..++.-.+|...+|.+ .|...- -...+++....+++|.+.|.+. ++.++.++.
T Consensus 272 ~k~r~~~~~~--e------G~~tyGgla~r~~~ala~--gL~e~~---~~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~g 337 (450)
T TIGR02618 272 QSAKELVVVF--E------GMPSYGGLAGRDMEAMAI--GIREAV---DYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVG 337 (450)
T ss_pred HHHHHHhhhc--C------CccccCchhhhhHHHHHH--HHHHhh---hHHHHHHHHHHHHHHHHHHHHC-CCcccCCCC
Confidence 4432221122 0 111222222344333321 111111 1245666777899999999997 898888888
Q ss_pred eeEEEEEecCCcch--hhhhhHHHHHHHH-HhCCcEEEe-eccccC------------CeEE-EEecCC-CCHHHHHHHH
Q psy852 691 LGLVCFRLRSENNL--IADQNNRKLLEDI-NASGRLHMV-PASQEQ------------NDEV-FELQER-KRKDDLAYKR 752 (891)
Q Consensus 691 ~~iV~Fr~~~~~~~--~~d~ln~~L~~~L-~~~G~~~~s-~s~~~g------------~~~l-~sv~~~-tT~edId~li 752 (891)
.+.|.+......++ ...--.+.|...| .+.|+--+. ++-..+ -..+ ..+... -|.+++|..+
T Consensus 338 gh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~ 417 (450)
T TIGR02618 338 GHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVA 417 (450)
T ss_pred cceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHH
Confidence 88988876542211 1122345666666 456653211 111100 1334 555443 3889999999
Q ss_pred HHHHHHHH
Q psy852 753 SFFVRMLG 760 (891)
Q Consensus 753 ~~L~ei~~ 760 (891)
++|..+.+
T Consensus 418 ~~~~~~~~ 425 (450)
T TIGR02618 418 DGIIKLYK 425 (450)
T ss_pred HHHHHHHh
Confidence 99998764
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0023 Score=73.43 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=68.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I~~i 220 (891)
.|++++-++.....++...|.+++.|++++++. +.++|+++++... ..+-+|+++..+|.||.+-+. ++|+++
T Consensus 117 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~-~~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~ 192 (395)
T PRK08175 117 TVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD-FFNELERAIRESY---PKPKMMILGFPSNPTAQCVELEFFEKVVAL 192 (395)
T ss_pred EEEEcCCCCcchHHHHHHcCCeEEEEecccCCC-cHHHHHHHHhhcc---CCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 377777777776666666778999999986543 5888888876421 123466667778999998777 788999
Q ss_pred HHHcCCceeeeccccC
Q psy852 221 AKEFDVWLHVDGAYAG 236 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG 236 (891)
|+++|+++++|-+|+.
T Consensus 193 a~~~~i~ii~De~y~~ 208 (395)
T PRK08175 193 AKRYDVLVVHDLAYAD 208 (395)
T ss_pred HHHcCcEEEEecchHh
Confidence 9999999999999954
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0029 Score=71.16 Aligned_cols=205 Identities=11% Similarity=0.077 Sum_probs=124.2
Q ss_pred ceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------hhh----------hhcC-------
Q psy852 528 VRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------CYR----------KSQG------- 578 (891)
Q Consensus 528 v~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c~~----------~ldG------- 578 (891)
.+++..|+| +++.+|.|++++...+. .|-++++..-... |.+ |+.|
T Consensus 139 ~~~v~Y~vd~et~~IDyD~~~k~a~e~-----kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~ 213 (413)
T COG0112 139 FNVVSYGVDPETGLIDYDEVEKLAKEV-----KPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVH 213 (413)
T ss_pred EEeEecccccccCccCHHHHHHHHHHh-----CCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccC
Confidence 366777888 56999999999999885 3555555332222 111 4433
Q ss_pred ---CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccc-hHHHHHHHHH
Q psy852 579 ---IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRS-LKLWFVIRTY 654 (891)
Q Consensus 579 ---i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~a-L~lW~~L~~l 654 (891)
++.||-+|.+-||.|-+|-| |++++++.+...+ +... ++ .+.+++=-... .+...+++..
T Consensus 214 p~P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kk-in~a---VF-----------Pg~qggpl~HviAakaVa~~Ea 277 (413)
T COG0112 214 PNPLPHADVVTTTTHKTLRGPRG-GIILTNDEELAKK-INSA---VF-----------PGLQGGPLMHVIAAKAVAFKEA 277 (413)
T ss_pred CCCCCccceEeCCcccCCCCCCc-eEEEeccHHHHHH-hhhh---cC-----------CccCCChHHHHHHHHHHHHHHH
Confidence 68899999999999999996 6777776432221 1100 00 11111111111 2334566667
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc---
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ--- 730 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~--- 730 (891)
-..++++..++..++|+.|++.|.+ .++.+++- .+..+|...+.+. +......-..|.+.|+..=--+-.
T Consensus 278 l~p~fk~Ya~qVv~NAkaLAe~l~~-~G~~vvsGgTdnHl~lVDl~~~-----~~~Gk~ae~~L~~~~It~NKN~iP~D~ 351 (413)
T COG0112 278 LEPEFKEYAKQVVKNAKALAEALKE-RGFKVVSGGTDNHLVLVDLRSK-----GLTGKKAEAALERAGITVNKNAIPFDP 351 (413)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHH-cCCeEecCCccceEEEEEcccC-----CCCHHHHHHHHHHcCEeeccCCCCCCC
Confidence 7788999999999999999999998 68998864 4556666555532 112233444455566552111100
Q ss_pred ----cCCeEEEE----ecCCCCHHHHHHHHHHHHHHH
Q psy852 731 ----EQNDEVFE----LQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ----~g~~~l~s----v~~~tT~edId~li~~L~ei~ 759 (891)
.-.++.+. +.....++|++++.+.|.+++
T Consensus 352 ~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl 388 (413)
T COG0112 352 ESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVL 388 (413)
T ss_pred CCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 11111222 344678888888888888776
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.013 Score=66.72 Aligned_cols=245 Identities=10% Similarity=0.032 Sum_probs=134.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +|+|+++++..++.+.- + +.-.|+++.-++.+....++..|++++.+|.+++ ..
T Consensus 82 ~vi--~t~G~~~al~~~~~~l~----~---------------~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~ 140 (373)
T PRK07324 82 NIL--QTNGATGANFLVLYALV----E---------------PGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWL 140 (373)
T ss_pred hEE--EcCChHHHHHHHHHHhC----C---------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCC
Confidence 555 68899999888776531 1 1113666666777887788888999999998753 46
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC-----------CCc----cEEE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI-----------EYA----DSFN 586 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi-----------~~a----DSIs 586 (891)
+|+++|++++.+.++ .++++ +-.|++. |.+| +|.+ ..+ ..|.
T Consensus 141 ~d~~~l~~~~~~~~k----li~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~ 216 (373)
T PRK07324 141 PDLDELRRLVRPNTK----LICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGIS 216 (373)
T ss_pred CCHHHHHHhCCCCCc----EEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEE
Confidence 899999988865321 22332 2355544 3321 1211 001 1233
Q ss_pred -EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-Hh-hHHHH
Q psy852 587 -VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LS-GLQKY 662 (891)
Q Consensus 587 -~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~-G~~~~ 662 (891)
-+..|.++.| .-+|+++. ++..+. .+.....|. ++ ....+.++++...+. .+ -+++.
T Consensus 217 ~~s~SK~~~~~G~RiG~i~~-~~~li~-~~~~~~~~~-------------~~----~~~~~~q~~a~~~l~~~~~~l~~~ 277 (373)
T PRK07324 217 TNSMSKTYSLPGIRVGWIAA-NEEVID-ILRKYRDYT-------------MI----CAGVFDDMLASLALEHRDAILERN 277 (373)
T ss_pred EecchhhcCCccceeEEEec-CHHHHH-HHHHHhCcE-------------Ee----cCChHHHHHHHHHHcCHHHHHHHH
Confidence 3678887755 33677776 333222 221111110 00 011233344433332 12 22333
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccccCCeEE-EEec
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQEQNDEV-FELQ 740 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g~~~l-~sv~ 740 (891)
.+...+..+.+.+.|++.+++.+..+........++.. +....++.++|. +.|+.+.-+........+ +++.
T Consensus 278 ~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~------~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~ 351 (373)
T PRK07324 278 RKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDV------DMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYC 351 (373)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCC------CCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEec
Confidence 34445567778888887777776654333333344431 123456777764 568875555443334456 8775
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy852 741 ERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 741 ~~tT~edId~li~~L~ei~ 759 (891)
. +++.+++.++.|++.+
T Consensus 352 ~--~~~~l~~~l~rl~~~l 368 (373)
T PRK07324 352 C--DTETLKKGLKKLSEFL 368 (373)
T ss_pred C--CHHHHHHHHHHHHHHH
Confidence 3 5788888887777665
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0068 Score=71.29 Aligned_cols=217 Identities=15% Similarity=0.081 Sum_probs=117.5
Q ss_pred EEEecccchHHH------HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----CCccc------
Q psy852 508 MAYCSKEAHSCV------EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----LGTTS------ 571 (891)
Q Consensus 508 vI~~S~~aH~Sv------~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~------ 571 (891)
.|++|..+|+++ ...+...|++++.++++ +..++++++++|+++++ ..+.+..+ .|.+.
T Consensus 167 eVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~Tk---lV~~vh~sN~~i~G~~~~~dl~e 241 (464)
T PRK04311 167 EVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINENTA---LLLKVHTSNYRIEGFTKEVSLAE 241 (464)
T ss_pred EEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCccCe---EEEEEcCCCccccccCCcCCHHH
Confidence 478888777743 22334568888888763 35689999999987542 12222211 24322
Q ss_pred ----hhhh-----hcC-----------------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCC
Q psy852 572 ----CYRK-----SQG-----------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPL 619 (891)
Q Consensus 572 ----c~~~-----ldG-----------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~ 619 (891)
|++| +|. -.++|.+++|+|||+++|. +|+++.+++ .+ +.+...+
T Consensus 242 I~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~-~G~i~g~~~-li-~~l~~~~- 317 (464)
T PRK04311 242 LAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ-AGIIVGKKE-LI-ARLKKHP- 317 (464)
T ss_pred HHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc-eEEEEEcHH-HH-HHHhhch-
Confidence 3332 232 0358999999999999995 888888754 22 2121110
Q ss_pred ccccCCCCCccccCCcccccccccc-----hHHHHHHHH--------H---HHhhHHHHHHHHHHHHHHHHHHhccCC--
Q psy852 620 YLQHGHEGAIDYRHWGIPLSRRFRS-----LKLWFVIRT--------Y---GLSGLQKYIRRHCELAKLFEGKVRRDP-- 681 (891)
Q Consensus 620 Yl~~~~e~~~~~~~~ti~~SRr~~a-----L~lW~~L~~--------l---G~~G~~~~i~~~~~lA~~L~~~L~~~~-- 681 (891)
..|.++. .++..+|.. . +..-+...+++..++|+.+++.|+..+
T Consensus 318 ------------------~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~ 379 (464)
T PRK04311 318 ------------------LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGA 379 (464)
T ss_pred ------------------hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCC
Confidence 1221110 111112221 1 122244455677778888998888764
Q ss_pred C--cEEeC---------CC--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEEEEecCCCCHHHH
Q psy852 682 R--FEISN---------DV--RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEVFELQERKRKDDL 748 (891)
Q Consensus 682 ~--~eil~---------~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~sv~~~tT~edI 748 (891)
+ +++.. .| .+..++..+.+. +.....+.++|.+...-.+. ......+++-+ ....++|+
T Consensus 380 ~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~-----~~~~~~l~~~lr~~~~~i~~--r~~~~~~~ld~-r~~~~~~~ 451 (464)
T PRK04311 380 AFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPK-----DRSLEALAARLRLLPPPVIG--RIEDGRLLLDL-RTLEEEDE 451 (464)
T ss_pred CeeEEEEEccCccCCCCCcCCCCCeEEEEEeCC-----CCCHHHHHHHHhcCCCCEEE--EEECCEEEEEe-CcCCHHHH
Confidence 3 34442 12 234444444332 22346777777763222222 22222222222 24588899
Q ss_pred HHHHHHHHHHH
Q psy852 749 AYKRSFFVRML 759 (891)
Q Consensus 749 d~li~~L~ei~ 759 (891)
+.+++.|+++.
T Consensus 452 ~~~~~~~~~~~ 462 (464)
T PRK04311 452 ERLAAALLEAL 462 (464)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.024 Score=65.51 Aligned_cols=246 Identities=9% Similarity=0.051 Sum_probs=137.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-----C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-----D 537 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-----~ 537 (891)
+|+ +|.|+++++..++.+.- + +.-.|++..-.++.....+...|.+++.||.+ .
T Consensus 104 ~I~--it~Ga~~al~~~~~~l~----~---------------~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~ 162 (405)
T PRK06207 104 ELI--ITPGTQGALFLAVAATV----A---------------RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADK 162 (405)
T ss_pred CEE--EeCCcHHHHHHHHHHhc----C---------------CCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCccc
Confidence 455 67888888876665421 1 12246666667777778888889999989875 3
Q ss_pred CCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCCCC-------c
Q psy852 538 KNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGIEY-------A 582 (891)
Q Consensus 538 ~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi~~-------a 582 (891)
+..+|+++|++++++.++ .++++ +-.|++. |.++ .+|-.. .
T Consensus 163 ~~~~d~~~l~~~~~~~~k----~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ 238 (405)
T PRK06207 163 RAGLDLDQLEEAFKAGVR----VFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPI 238 (405)
T ss_pred CCCcCHHHHHHhhhhcCe----EEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCC
Confidence 578999999999875321 22222 2345554 2221 111100 0
Q ss_pred c----EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--
Q psy852 583 D----SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-- 655 (891)
Q Consensus 583 D----SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-- 655 (891)
| -..-++.|.++.| .=+|+++.. +..+ +.+.....+ +.+. ...+.+......+.
T Consensus 239 ~~~~vi~i~SfSK~~~lpGlRiG~ii~~-~~l~-~~~~~~~~~-------------~~~~----~~~~~q~a~~~~l~~~ 299 (405)
T PRK06207 239 DPENVITIMGPSKTESLSGYRLGVAFGS-PAII-DRMEKLQAI-------------VSLR----AAGYSQAVLRTWFSEP 299 (405)
T ss_pred CcCcEEEEecchhhccCcccceEEEEcC-HHHH-HHHHHHHhH-------------hccC----CCHHHHHHHHHHHhCc
Confidence 1 2334467766655 126665432 2211 111100000 0000 01122223333332
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cC
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQ 732 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g 732 (891)
..-+++.++...+.++++.+.|++.+++++..+....-++.++++. +.....+.+.|. +.|+.+.-+... .+
T Consensus 300 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~-----~~~~~~~~~~l~~~~gV~v~pG~~F~~~~ 374 (405)
T PRK06207 300 DGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRL-----AVSLHDFVKILRLQAGVIVTPGTEFSPHT 374 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCccc-----CCCHHHHHHHHHHhcCEEEeCchHhCCCC
Confidence 2235677777778888899999887777765444455666776532 112456778886 578876555432 22
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+ +++.. +.++++..++.|.+.+
T Consensus 375 ~~~~Ris~~~--~~~~l~~al~rl~~~l 400 (405)
T PRK06207 375 ADSIRLNFSQ--DHAAAVAAAERIAQLI 400 (405)
T ss_pred CCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 4456 88874 5788888887777655
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0095 Score=68.31 Aligned_cols=222 Identities=10% Similarity=0.100 Sum_probs=140.7
Q ss_pred ceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCC-ccEEEEecC----Cccc--------h
Q psy852 506 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGY-IPFFVSTTL----GTTS--------C 572 (891)
Q Consensus 506 ~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~-ip~~Vvata----GTT~--------c 572 (891)
+.+|+.-+..|.|+..++++.+.++++.+- -|+++||+.|++....+. ..++|+=.. |+.. |
T Consensus 123 ~dli~~D~lnHASiidG~rls~a~~~~f~H-----nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~ 197 (388)
T COG0156 123 GDLIFSDELNHASIIDGIRLSRAEVRRFKH-----NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELA 197 (388)
T ss_pred CcEEEEechhhhhHHHHHHhCCCcEEEecC-----CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHH
Confidence 457888899999999999999988887766 578999999998543332 233333222 3322 1
Q ss_pred hh----------h--------------hcCC--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC
Q psy852 573 YR----------K--------------SQGI--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE 626 (891)
Q Consensus 573 ~~----------~--------------ldGi--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e 626 (891)
.+ | -.|+ ..+|-+.-+..|.++ ..|.++..+.............|+.+.
T Consensus 198 ~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG---s~Gg~v~g~~~~~d~L~~~ar~~ifSt-- 272 (388)
T COG0156 198 EKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG---SSGGYIAGSAALIDYLRNRARPFIFST-- 272 (388)
T ss_pred HHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc---ccCceeeCcHHHHHHHHHhCCceeccC--
Confidence 11 1 1133 345899999999998 567777777653322222223443321
Q ss_pred CCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhh
Q psy852 627 GAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIA 706 (891)
Q Consensus 627 ~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~ 706 (891)
+++ +..+...-.+++.+- ...+..++..++++++...++.. ++.+ .+..++|+.+.+.+
T Consensus 273 --------alp---P~~aaa~~~al~~l~--~~~~~r~~L~~~~~~~~~~~~~~-~~~~-~~s~s~I~pv~~gd------ 331 (388)
T COG0156 273 --------ALP---PAVAAAALAALRILE--EGPERRERLQELAAFFRSLLKAL-GLVL-LPSESPIIPVILGD------ 331 (388)
T ss_pred --------CCC---HHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhc-CCcc-CCCCCCeeeeEeCC------
Confidence 111 122222333334332 33455666777788887555543 3433 35567888888754
Q ss_pred hhhHHHHHHHHHhCCcEEE---eeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 707 DQNNRKLLEDINASGRLHM---VPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 707 d~ln~~L~~~L~~~G~~~~---s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
+....++...|.+.|+... -|+...+..-+ ++++...|++||++++++|.++
T Consensus 332 ~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 332 EERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 3467888888988887632 34445666667 9999888999999999998764
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00066 Score=66.70 Aligned_cols=131 Identities=14% Similarity=-0.034 Sum_probs=81.4
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH-HHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE-KAAMM 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~-Kaa~l 525 (891)
++.+++++.++. +.-.++ ++.|+++++..++.+++.. +..|+++...|.+.. ..+..
T Consensus 4 ~~~~~l~~~~~~-~~~~~~--~~~~~t~a~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~~~~~~~ 61 (170)
T cd01494 4 ELEEKLARLLQP-GNDKAV--FVPSGTGANEAALLALLGP-------------------GDEVIVDANGHGSRYWVAAEL 61 (170)
T ss_pred HHHHHHHHHcCC-CCCcEE--EeCCcHHHHHHHHHHhCCC-------------------CCEEEEeecccceehhhHHHh
Confidence 445566666631 111333 5668899999998886431 124888888888887 77778
Q ss_pred cCceEEEecCCCCCCcCHH--HHHHHHHhhhhcCCccEEEEe--c---CCccc--------hhhh-----hc--------
Q psy852 526 AFVRLKILEPDDKNSLRGA--TLRQVMQQDETMGYIPFFVST--T---LGTTS--------CYRK-----SQ-------- 577 (891)
Q Consensus 526 ~gv~v~~Vp~d~~G~mD~~--~Le~aI~~d~~~g~ip~~Vva--t---aGTT~--------c~~~-----ld-------- 577 (891)
.+.+++.++.+.++..+.+ .+++... ...|.+++. . .|... |+++ +|
T Consensus 62 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~ 136 (170)
T cd01494 62 AGAKPVPVPVDDAGYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGAS 136 (170)
T ss_pred cCCEEEEeccCCCCccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccc
Confidence 8999999998776554443 4433221 112233322 2 22221 3321 11
Q ss_pred ------C-CCCccEEEEcCcccCCcccccEEEEEe
Q psy852 578 ------G-IEYADSFNVNVNKWLLTAFDSSCLWVA 605 (891)
Q Consensus 578 ------G-i~~aDSIs~d~HK~L~~P~g~G~llvR 605 (891)
. ...+|.++.++|||+++ .++|++++|
T Consensus 137 ~~~~~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 137 PAPGVLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccccccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 1 24589999999999998 799999886
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0053 Score=71.53 Aligned_cols=214 Identities=13% Similarity=0.123 Sum_probs=118.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH----HHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka----a~l~gv~v~~Vp~d~~G~mD~ 543 (891)
.+++|+.++..++.+. .+ +.-.|+++...|.+..+. +...|++++.++++ |+
T Consensus 83 ~~~SG~~Ai~~al~al----l~---------------pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~ 138 (427)
T PRK05994 83 AVASGHAAQFLVFHTL----LQ---------------PGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD-----DP 138 (427)
T ss_pred EEcCHHHHHHHHHHHH----hC---------------CCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC-----CH
Confidence 4567788888776553 11 112366666777654433 34467888888763 78
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.+ ..+++. +..|... |+++ +|.. -++|.+..+.|||++.|
T Consensus 139 ~~l~~ai~~~t----klV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~ 214 (427)
T PRK05994 139 ASFERAITPRT----KAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGH 214 (427)
T ss_pred HHHHHhcCcCC----eEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCC
Confidence 89998886532 223332 2234433 3332 2332 35999999999999988
Q ss_pred cc-cEEEEEeCCc-cchhhhccCCCccccCCCCCc---cccCCc-------------ccccccccchHHHHHHHHHHHhh
Q psy852 597 FD-SSCLWVADRY-KLTSALVVDPLYLQHGHEGAI---DYRHWG-------------IPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 597 ~g-~G~llvR~~~-~L~~~l~~~~~Yl~~~~e~~~---~~~~~t-------------i~~SRr~~aL~lW~~L~~lG~~G 658 (891)
-+ .|.+++.... .+.. .....++........ -...+. -..+.....+..|..+ -|.+.
T Consensus 215 ~~~~gG~v~~~~~~~~~~--~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~--~~l~t 290 (427)
T PRK05994 215 GNSMGGIIVDGGTFDWSK--SGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLIL--TGIET 290 (427)
T ss_pred CCcEEEEEEeCCcccccc--ccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHH--cCccc
Confidence 75 5666664321 1100 000011111000000 000000 0011223345555544 47788
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCC------------------ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDV------------------RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~------------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+..++++..++|.++.+.|+++|.++-+.-| -.++++|.+++. .....++++.|.
T Consensus 291 L~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~~-----~~~~~~~~~~l~ 363 (427)
T PRK05994 291 LPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKGG-----YEAGVKLVSSLK 363 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecCC-----HHHHHHHHHhCC
Confidence 8999999999999999999999987643211 136999999742 123345555554
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0043 Score=70.27 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccc
Q psy852 56 TELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVD 135 (891)
Q Consensus 56 ~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~ 135 (891)
.++..+.-+.+|+++|.++... ..+.||+..+...+..++..
T Consensus 53 ~~~~~~Le~~lA~~~g~~~e~i-----------------------------lv~~gg~~a~~~~~~al~~~--------- 94 (346)
T TIGR03576 53 AIFEEKVQELGREHLGGPEEKI-----------------------------LVFNRTSSAILATILALEPP--------- 94 (346)
T ss_pred HHHHHHHHHHHHHHcCCCcceE-----------------------------EEECCHHHHHHHHHHHhCCC---------
Confidence 3788888889999999965421 12356664333322222211
Q ss_pred cccccCCeEEEe-c-CCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc--
Q psy852 136 EGVLLSKLMAYC-S-KEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-- 211 (891)
Q Consensus 136 ~g~~~~~~~v~~-S-~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-- 211 (891)
.+.+++. + .-.|.|+...+++.+.++... .|+++|+. . . .+.+|++| |++.+|.+
T Consensus 95 -----gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~-------~~l~~l~~----~-~---~~~lIiit-g~s~~G~v~~ 153 (346)
T TIGR03576 95 -----GRKVVHYLPEKPAHPSIPRSCKLAGAEYFES-------DELSELKK----I-D---GTSLVVIT-GSTMDLKVVS 153 (346)
T ss_pred -----CCEEEECCCCCCCchhHHHHHHHcCCEEecc-------CCHHHHhh----C-c---CceEEEEE-CCCCCCcccC
Confidence 1223332 3 468999999888776665322 13444322 1 1 13345555 56888988
Q ss_pred -cCHHHHHHHHHHcCCceeeeccccC
Q psy852 212 -DNLAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 212 -Dpl~~I~~i~~~~~~~lHvDaA~GG 236 (891)
.||++|+++|+++++++.+|-|||-
T Consensus 154 ~~~L~~i~~la~~~~~~livDEAy~~ 179 (346)
T TIGR03576 154 EEDLKRVIKQAKSKEAIVLVDDASGA 179 (346)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCccc
Confidence 8999999999999999999999953
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0028 Score=71.51 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=71.8
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-++.....++...|.+++.+++++++.+|+++|++.+.... +-+|+++.-+|.||.+-+.+++.++++..
T Consensus 108 vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~-----~~~v~l~~p~NPtG~~~~~~~~~~i~~~~ 182 (356)
T PRK04870 108 VLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHR-----PALVFLAYPNNPTGNLFDDADVERIIEAA 182 (356)
T ss_pred EEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCC-----CCEEEEcCCCCCCCCCCCHHHHHHHHHHC
Confidence 6666777777777777788899999999889999999999886432 23666677899999999999999988877
Q ss_pred CCceeeeccccC
Q psy852 225 DVWLHVDGAYAG 236 (891)
Q Consensus 225 ~~~lHvDaA~GG 236 (891)
+.++++|.+|..
T Consensus 183 ~~~ii~De~y~~ 194 (356)
T PRK04870 183 PGLVVVDEAYQP 194 (356)
T ss_pred CCEEEEECCchh
Confidence 889999999943
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.023 Score=66.38 Aligned_cols=254 Identities=15% Similarity=0.145 Sum_probs=142.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH-HHcCceEEEecCCC---------
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MMAFVRLKILEPDD--------- 537 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-~l~gv~v~~Vp~d~--------- 537 (891)
++.||++++.+++.+. .+ .++ .| . ...|+....++ .+.|...+.+++++
T Consensus 73 ~t~~Gt~Al~la~~al----~~--------------pGD-~V-~-~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~p 131 (431)
T cd00617 73 PTHQGRGAENILFSIL----LK--------------PGR-TV-P-SNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIP 131 (431)
T ss_pred EcCCHHHHHHHHHHHh----CC--------------CCC-EE-c-cCCcccchHHHHHhCCCEeEEEecccccccccccC
Confidence 6789999999887653 11 112 23 2 45777666554 56788888888863
Q ss_pred -CCCcCHHHHHHHHHhhhhcCCccEEEE----ecC-Cccc-----------hhhh----------h-----------cC-
Q psy852 538 -KNSLRGATLRQVMQQDETMGYIPFFVS----TTL-GTTS-----------CYRK----------S-----------QG- 578 (891)
Q Consensus 538 -~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ata-GTT~-----------c~~~----------l-----------dG- 578 (891)
.|.||+++|+++|.+... ..++++++ +.. |... |.+| + +|
T Consensus 132 f~gniD~e~Le~~I~~~~~-~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~ 210 (431)
T cd00617 132 FKGNIDVAKLEKLIDEVGA-ENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGY 210 (431)
T ss_pred CCCCcCHHHHHHHhCcccC-CCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccc
Confidence 355999999999986421 12333333 223 5543 3221 1 12
Q ss_pred ------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchH
Q psy852 579 ------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLK 646 (891)
Q Consensus 579 ------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~ 646 (891)
...+|++++++||-+++|.| |+++.++++.... +.... ... +....+++ +. .|
T Consensus 211 ~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~~-~~~~~-~~~---~~~~~~gG--~~-~r------ 275 (431)
T cd00617 211 RDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYEE-ARQRV-VLY---EGFVTYGG--MA-GR------ 275 (431)
T ss_pred cCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHHH-HHHhc-ccc---CCcccccc--cc-HH------
Confidence 13689999999999998872 4566655433332 22100 000 00000111 11 11
Q ss_pred HHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcch--hhhhhHHHHHHHH-HhCC
Q psy852 647 LWFVIRTYGLSGL--QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNL--IADQNNRKLLEDI-NASG 721 (891)
Q Consensus 647 lW~~L~~lG~~G~--~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~--~~d~ln~~L~~~L-~~~G 721 (891)
...++ ..|.+.. .+.+++..+.+++|.+.|++. ++.+..+.....|........+. .-.-..+.+..+| .+.|
T Consensus 276 ~~~A~-A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~g 353 (431)
T cd00617 276 DMEAL-AQGLREAVEEDYLRHRVEQVRYLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAG 353 (431)
T ss_pred HHHHH-HHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcC
Confidence 11122 2333222 355677777889999999886 78887776667777776532110 0001356677555 5567
Q ss_pred cEEEe-ec-----cccC-------CeEE-EEecC-CCCHHHHHHHHHHHHHHHH
Q psy852 722 RLHMV-PA-----SQEQ-------NDEV-FELQE-RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 722 ~~~~s-~s-----~~~g-------~~~l-~sv~~-~tT~edId~li~~L~ei~~ 760 (891)
+..+. ++ ...+ -..+ +.+.. --|.+++|.+++.|..+.+
T Consensus 354 V~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~ 407 (431)
T cd00617 354 VRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE 407 (431)
T ss_pred eeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHh
Confidence 76443 11 1111 2344 65544 4599999999999998874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0077 Score=69.37 Aligned_cols=178 Identities=15% Similarity=0.178 Sum_probs=102.6
Q ss_pred EEecccchHH----HHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hh
Q psy852 509 AYCSKEAHSC----VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CY 573 (891)
Q Consensus 509 I~~S~~aH~S----v~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~ 573 (891)
|+++...|.+ +...+...|++++.++.+ |+++++++|++.++ .+++. +..|... |+
T Consensus 101 Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-----d~e~l~~~i~~~tk----lV~le~p~Np~G~v~dl~~I~~la~ 171 (391)
T TIGR01328 101 LISDECLYGCTFALLEHALTKFGIQVDFINMA-----IPEEVKAHIKDNTK----IVYFETPANPTMKLIDMERVCRDAH 171 (391)
T ss_pred EEEecCcchHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhhccCCe----EEEEECCCCCCCcccCHHHHHHHHH
Confidence 5666665543 333344567788888775 78888888865321 22221 2234332 33
Q ss_pred hh-----hcC-----------CCCccEEEEcCcccCCccccc-EEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 574 RK-----SQG-----------IEYADSFNVNVNKWLLTAFDS-SCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 574 ~~-----ldG-----------i~~aDSIs~d~HK~L~~P~g~-G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
++ +|+ -.++|.+..+++|++++|-+. |.+++.+++.+.........+ . +
T Consensus 172 ~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~----------~--~-- 237 (391)
T TIGR01328 172 SQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKD----------M--T-- 237 (391)
T ss_pred HcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHh----------C--C--
Confidence 21 222 136899999999999988763 445555554333221110000 0 0
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEEec
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFRLR 699 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr~~ 699 (891)
+-....+..|..++ +.+.+..++++..++++++.+.|++.|.++-+.-| -.++++|.++
T Consensus 238 --g~~l~~~~a~l~l~--~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~ 313 (391)
T TIGR01328 238 --GSVISPFDAWLILR--GLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK 313 (391)
T ss_pred --CCCCCcHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC
Confidence 11223345566654 55667788999999999999999999987654222 1369999997
Q ss_pred CCcchhhhhhHHHHHHHHH
Q psy852 700 SENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 700 ~~~~~~~d~ln~~L~~~L~ 718 (891)
+. .....++.+.|.
T Consensus 314 ~~-----~~~~~~f~~~l~ 327 (391)
T TIGR01328 314 GG-----FAGAKKLLNNLK 327 (391)
T ss_pred CC-----HHHHHHHHHhCC
Confidence 42 122345555554
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.015 Score=65.70 Aligned_cols=235 Identities=9% Similarity=0.044 Sum_probs=132.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ ++.|+++++..++.+. .+ +...|++..-.......++...|.+++.+|.+ ++.+|
T Consensus 83 ~i~--~t~G~~~~l~~~~~~~----~~---------------~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d 140 (359)
T PRK03158 83 QLL--FGAGLDEVIQMISRAL----LN---------------PGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHD 140 (359)
T ss_pred HEE--ECCCHHHHHHHHHHHH----hC---------------CCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcC
Confidence 455 6778888876544332 11 11236666666666777777889999999997 68899
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh--h-----hcCC--------------C---C--ccEE
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR--K-----SQGI--------------E---Y--ADSF 585 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~--~-----ldGi--------------~---~--aDSI 585 (891)
+++|++++++.. ..++++ +..|++. +.. + +|.+ . . -.-+
T Consensus 141 ~~~l~~~~~~~~----~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~ 216 (359)
T PRK03158 141 LEAMLKAIDEQT----KIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIV 216 (359)
T ss_pred HHHHHHhcCCCC----CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEE
Confidence 999998886422 122333 3355554 111 0 0100 0 0 0122
Q ss_pred EEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh-HHHH
Q psy852 586 NVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG-LQKY 662 (891)
Q Consensus 586 s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G-~~~~ 662 (891)
.-++.|.++.| .-+|+++... +.+ +.+. ... .+. ...+.+.++...+.... +++.
T Consensus 217 ~~S~SK~~g~~GlRiG~~v~~~-~~~-~~~~~~~~--------------~~~------~~~~~q~~~~~~l~~~~~~~~~ 274 (359)
T PRK03158 217 LRTFSKAYGLAALRVGYGIASE-ELI-EKLNIARP--------------PFN------TTRIAQYAAIAALEDQAFLKEC 274 (359)
T ss_pred EEechHhhcCcchhhehhcCCH-HHH-HHHHHhcC--------------CCC------CCHHHHHHHHHHhcCHHHHHHH
Confidence 23566766644 4456665432 212 1111 000 000 12344444444443333 3344
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecC
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQE 741 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~ 741 (891)
.+...+..+++.+.|++. ++.+. ++..+.+++++. . ...++.+.|.+.|+.+..+.......++ ++++
T Consensus 275 ~~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~~-~-------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~- 343 (359)
T PRK03158 275 VEKNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDTG-R-------DANELFEALLKKGYIVRSGAALGFPTGVRITIG- 343 (359)
T ss_pred HHHHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEECC-C-------CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC-
Confidence 445566677788888776 56664 444556666552 1 2467888888889876655444334566 8876
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 742 ~tT~edId~li~~L~ei 758 (891)
+.+++++++++|+++
T Consensus 344 --~~~~~~~l~~al~~~ 358 (359)
T PRK03158 344 --LKEQNDKIIELLKEL 358 (359)
T ss_pred --CHHHHHHHHHHHHHh
Confidence 889999999999875
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0093 Score=73.00 Aligned_cols=253 Identities=12% Similarity=0.072 Sum_probs=146.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-----CCcC-
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-----NSLR- 542 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-----G~mD- 542 (891)
+.|.|-+|.+++.++-. +.-.|++...+|-|+..++.+.|...+.++++.+ |.++
T Consensus 217 vNGTS~~n~av~~a~~~-------------------~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~g~I~~ 277 (714)
T PRK15400 217 TNGTSTANKIVGMYSAP-------------------AGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQ 277 (714)
T ss_pred eCchHHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCc
Confidence 34667788877766311 2235899999999999999999999888876432 3455
Q ss_pred ----HHHHHHHHHhhhhcCCccEEEEecCCccc--h----------hh---hh-----------------cCC-CCc---
Q psy852 543 ----GATLRQVMQQDETMGYIPFFVSTTLGTTS--C----------YR---KS-----------------QGI-EYA--- 582 (891)
Q Consensus 543 ----~~~Le~aI~~d~~~g~ip~~VvataGTT~--c----------~~---~l-----------------dGi-~~a--- 582 (891)
++.++++|++.... ..|..++.+..|.. | .. ++ .++ .++
T Consensus 278 ~~~~~e~i~~~i~~~p~a-k~p~~~vit~pTYdG~~yd~~~I~~~~~~~~ilvDEAwgah~~F~p~~~~~sam~~ga~~~ 356 (714)
T PRK15400 278 SEFQHATIAKRVKETPNA-TWPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEG 356 (714)
T ss_pred cccCHHHHHHHHHhCccc-cCccEEEEECCCCccEecCHHHHHHHhCCCCEEEEccchhhhccCcccCCcChhhcCCCCC
Confidence 89999999875432 34666666666654 1 10 01 112 234
Q ss_pred c--EEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 583 D--SFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 583 D--SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
| .++-|.||.|.+--.++.+.++.. +.. -..+..|+-+.+. .|. +.+ +.+|-.... .+-...-+
T Consensus 357 ~~i~vtQStHKtL~alTQaS~LHvkg~--vd~-~~~n~a~~m~~ST-SPs---Y~l-----~ASLD~a~~--~m~~~~G~ 422 (714)
T PRK15400 357 KVIYETQSTHKLLAAFSQASMIHVKGD--VNE-ETFNEAYMMHTTT-SPH---YGI-----VASTETAAA--MMKGNAGK 422 (714)
T ss_pred CceEEEEchhhcccchhHHhHHHHcCC--CCH-HHHHHHHHHHcCC-CcH---HHH-----HHHHHHHHH--HHHhhhhH
Confidence 4 888899998888777777766543 110 0111112111110 000 000 011111111 11111224
Q ss_pred HHHHHHHHHHHHHHHHhccCCC------cEEeCCC-----------------------------ceeEEEEEecCCcc--
Q psy852 661 KYIRRHCELAKLFEGKVRRDPR------FEISNDV-----------------------------RLGLVCFRLRSENN-- 703 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~------~eil~~~-----------------------------~~~iV~Fr~~~~~~-- 703 (891)
+.+++.++++..|.++|.++++ |+++.+. +..-|.+..++.+.
T Consensus 423 ~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g 502 (714)
T PRK15400 423 RLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDG 502 (714)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCc
Confidence 5667778888888888877776 7776432 11222232222110
Q ss_pred --hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 704 --LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 704 --~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
++..--...+.+.|.+.|+. ....+.+.+ |.++...|++++++++++|.++-
T Consensus 503 ~~~~~Gipg~~v~~~L~e~gI~----~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~ 557 (714)
T PRK15400 503 TMSDFGIPASIVAKYLDEHGIV----VEKTGPYNLLFLFSIGIDKTKALSLLRALTDFK 557 (714)
T ss_pred cccccCCCHHHHHHHHHHcCCE----EEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 00111234566778888987 555566666 87888999999999999998764
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.022 Score=65.64 Aligned_cols=260 Identities=8% Similarity=0.071 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
...++++.+++.+.. +.+ +.++|+++|..++..++...... + ...+|+.....|.|+....
T Consensus 92 ~~~~l~~~la~~~~~----~~~--~~~sG~~a~~~ai~~~~~~~~~~----------~---~~~vi~~~~~~H~s~~~~~ 152 (402)
T PRK07505 92 ILKDLEEALSELFGA----SVL--TFTSCSAAHLGILPLLASGHLTG----------G---VPPHMVFDKNAHASLNILK 152 (402)
T ss_pred HHHHHHHHHHHHhCC----CEE--EECChHHHHHHHHHHHHhcccCC----------C---CCCEEEEchhhhHhHHhhh
Confidence 345566666666543 333 34467889988887655422110 0 1235677779999875432
Q ss_pred H--HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC------
Q psy852 524 M--MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI------ 579 (891)
Q Consensus 524 ~--l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi------ 579 (891)
. ..+.+++.+|.. |+++|++++++.. ..++++ +..|+.. |.++ +|.+
T Consensus 153 ~~~~~~~~v~~~~~~-----d~~~l~~~~~~~~----~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~ 223 (402)
T PRK07505 153 GICADETEVETIDHN-----DLDALEDICKTNK----TVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIY 223 (402)
T ss_pred hhhhcCCeEEEeCCC-----CHHHHHHHHhcCC----CEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCc
Confidence 2 234577777763 8899998886531 222222 2334443 4331 1111
Q ss_pred ------------C--Ccc--EEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCccccccc-
Q psy852 580 ------------E--YAD--SFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRR- 641 (891)
Q Consensus 580 ------------~--~aD--SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr- 641 (891)
. .-| -+..+..|.++.+ | |++++.+++.. +.+. .... ++...+..
T Consensus 224 g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-G-g~~~~~~~~~~-~~~~~~~~~--------------~t~~~~~~~ 286 (402)
T PRK07505 224 GKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-G-GVIMLGDAEQI-ELILRYAGP--------------LAFSQSLNV 286 (402)
T ss_pred CCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-C-eEEEeCCHHHH-HHHHHhCCC--------------ceeCCCCCH
Confidence 0 012 2223677876654 2 45444343222 2221 1111 11111221
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 642 FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
+.......++..+..+.+.+..+...+..+.+...+... .....+.++.+.+.+ .....++.+.|.++|
T Consensus 287 ~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~g~~~~i~~~~~~~------~~~~~~~~~~l~~~G 355 (402)
T PRK07505 287 AALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE-----QSGSFLPIRLIYIGD------EDTAIKAAKQLLDRG 355 (402)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCEEEEEeCC------HHHHHHHHHHHHHCC
Confidence 222334445554555555554444444443333222111 111223343333321 124567889999999
Q ss_pred cEEEeecc---ccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPAS---QEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 722 ~~~~s~s~---~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++..... ..+..++ |+++..+|++|++++++.|+++.
T Consensus 356 i~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l 397 (402)
T PRK07505 356 FYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEIL 397 (402)
T ss_pred CeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHH
Confidence 88543211 1233567 99999999999999999998775
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.021 Score=65.49 Aligned_cols=251 Identities=8% Similarity=0.046 Sum_probs=138.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEe-cCCCC-CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKIL-EPDDK-NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~V-p~d~~-G~ 540 (891)
+|+ +++|+++++..++.+. .+ +.-.|+++.-++.....++...|..++.+ +.+++ +.
T Consensus 95 ~i~--it~G~~~al~~~~~~~----~~---------------~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~ 153 (398)
T PRK08363 95 DVR--VTAAVTEALQLIFGAL----LD---------------PGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQ 153 (398)
T ss_pred hEE--EeCCHHHHHHHHHHHh----CC---------------CCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCc
Confidence 455 6788888887776543 11 12247777778888888888777777777 55544 57
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh--------------hcC-------CCCc-cE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK--------------SQG-------IEYA-DS 584 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~--------------ldG-------i~~a-DS 584 (891)
+|+++|++++.+.+ ..++++. -.|++. |.++ .++ +... .-
T Consensus 154 ~d~~~l~~~~~~~~----~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~v 229 (398)
T PRK08363 154 PDIDDIRKKITEKT----KAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPV 229 (398)
T ss_pred CCHHHHHhhCCcce----EEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcE
Confidence 99999999886532 1223322 356543 2221 111 1111 13
Q ss_pred E-EEcCcccC-CcccccEEEEEeCCccchhhhccC-CCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhH
Q psy852 585 F-NVNVNKWL-LTAFDSSCLWVADRYKLTSALVVD-PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGL 659 (891)
Q Consensus 585 I-s~d~HK~L-~~P~g~G~llvR~~~~L~~~l~~~-~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~ 659 (891)
| .-+.+|++ .....+|+++.+....+.+.+... ..+.. ..++ .+ .+.+.++...+ ..+-+
T Consensus 230 i~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~---------~~~~--~s----~~~q~~~~~~l~~~~~~l 294 (398)
T PRK08363 230 IVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLAR---------IRLC--PN----TPAQFAAIAGLTGPMDYL 294 (398)
T ss_pred EEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhc---------cccc--CC----hHHHHHHHHHHhCChHHH
Confidence 3 34789984 455788999884332111111100 00000 0000 11 12222333333 23445
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEE-EecCCcchhhhhhHHHHH-HHHHhCCcEEEeeccc--cCCeE
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF-RLRSENNLIADQNNRKLL-EDINASGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~F-r~~~~~~~~~d~ln~~L~-~~L~~~G~~~~s~s~~--~g~~~ 735 (891)
++..++..+..+++.+.|++++++++. +|+.+.+.| ++.+.. .....++. ..|.+.|+.+..++.. .+...
T Consensus 295 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~----~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~ 369 (398)
T PRK08363 295 EEYMKKLKERRDYIYKRLNEIPGISTT-KPQGAFYIFPRIEEGP----WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGH 369 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEec-CCCeEEEEEEEeccCC----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCe
Confidence 566666777888899999888777754 455565555 564310 01233444 4457789876555433 23346
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ +++. .+++++++.++.|++.++
T Consensus 370 iRis~~--~~~~~l~~~l~~l~~~~~ 393 (398)
T PRK08363 370 FRLVFL--PPVEILEEAMDRFEEFMR 393 (398)
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHH
Confidence 6 8875 358889988888887653
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0033 Score=72.21 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=83.3
Q ss_pred EEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccc
Q psy852 561 FFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPL 638 (891)
Q Consensus 561 ~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~ 638 (891)
++|.++.|+....+.++ .++|.+.+|+||++.+|-+ -|+++.++++....... ++. .+
T Consensus 179 lvVD~t~~s~~~~~pl~--~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~-----~~~---------~~---- 238 (384)
T PRK06434 179 VIVDATFASPYNQNPLD--LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVE-----RRK---------TL---- 238 (384)
T ss_pred eEEECCCCCcccCCchh--cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHH-----HHH---------hc----
Confidence 56788877665444443 3599999999999999886 66666666542221110 000 00
Q ss_pred cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-----------eeEEEEEecCCcchhhh
Q psy852 639 SRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-----------LGLVCFRLRSENNLIAD 707 (891)
Q Consensus 639 SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-----------~~iV~Fr~~~~~~~~~d 707 (891)
+.....+..|.. ..|.+.+..++++..++|+.+++.|+++|.++-+.-|. .++++|.+++.
T Consensus 239 G~~~~~~~A~l~--~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~~------ 310 (384)
T PRK06434 239 GSNPDPIQAYLA--LRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRSM------ 310 (384)
T ss_pred CCCCCHHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECCH------
Confidence 111223444544 45788889999999999999999999999875332221 46999999631
Q ss_pred hhHHHHHHHHH
Q psy852 708 QNNRKLLEDIN 718 (891)
Q Consensus 708 ~ln~~L~~~L~ 718 (891)
....++.+.|+
T Consensus 311 ~~~~~f~~~l~ 321 (384)
T PRK06434 311 EDVHKFIRNLE 321 (384)
T ss_pred HHHHHHHHhCC
Confidence 22345555554
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.009 Score=70.12 Aligned_cols=212 Identities=16% Similarity=0.142 Sum_probs=112.2
Q ss_pred EEEecccchH------HHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----CCccc------
Q psy852 508 MAYCSKEAHS------CVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----LGTTS------ 571 (891)
Q Consensus 508 vI~~S~~aH~------Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~------ 571 (891)
.|++|...|. ++...+...|++++.++++ +..|+++++++|+++++ ..+.+..+ .|.+.
T Consensus 162 eVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~T~---lv~~~h~sN~~~~G~~~~~dl~~ 236 (454)
T TIGR00474 162 EVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITENTA---LLLKVHTSNYRIVGFTEEVSIAE 236 (454)
T ss_pred EEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcCCE---EEEEEccCcccccCCCCCCCHHH
Confidence 4788877763 3333444568888888764 35689999999976532 11222211 24321
Q ss_pred ----hhhh-----hcC------------C-----------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCC
Q psy852 572 ----CYRK-----SQG------------I-----------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPL 619 (891)
Q Consensus 572 ----c~~~-----ldG------------i-----------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~ 619 (891)
|+++ +|. + .++|.+++|+|||+++|. +|+++.+++ .+. .+...+
T Consensus 237 I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~~-~i~-~l~~~~- 312 (454)
T TIGR00474 237 LVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ-AGIIVGKKE-LIE-RLKKNP- 312 (454)
T ss_pred HHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe-EEEEEECHH-HHH-hhhhch-
Confidence 4332 221 0 348999999999999995 788888754 221 111111
Q ss_pred ccccCCCCCccccCCccccccccc-----------chHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHhccC--C
Q psy852 620 YLQHGHEGAIDYRHWGIPLSRRFR-----------SLKLWF-----VIRTYGLSGLQKYIRRHCELAKLFEGKVRRD--P 681 (891)
Q Consensus 620 Yl~~~~e~~~~~~~~ti~~SRr~~-----------aL~lW~-----~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~--~ 681 (891)
..|.++ .+..|. .+..-|..-+...+++..++|+.+++.|++. +
T Consensus 313 ------------------l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~ 374 (454)
T TIGR00474 313 ------------------LTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGP 374 (454)
T ss_pred ------------------hHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccC
Confidence 122111 111111 1112234444555667777888888888764 4
Q ss_pred Cc--EEeCC---------C--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEEEEecC-CCCHHH
Q psy852 682 RF--EISND---------V--RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEVFELQE-RKRKDD 747 (891)
Q Consensus 682 ~~--eil~~---------~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~sv~~-~tT~ed 747 (891)
++ ++... | .+...+..+.+. +.....+.++|.+...-.+. ...... +.+.. ...++|
T Consensus 375 ~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~-----~~~~~~l~~~lr~~~~~ii~--r~~~~~--~~ld~r~~~~~~ 445 (454)
T TIGR00474 375 GFELEIVPGLSQVGGGSLPDERLPSYAVTLTPD-----GLSAEKLEARLRELPPPIIG--RIEDDR--FLLDLRTLLEDE 445 (454)
T ss_pred CceEEEEEcCCcccCCCCcCCCCCeEEEEEecC-----CCCHHHHHHHHhcCCCCEEE--EEECCE--EEEEeCcCCHHH
Confidence 44 33321 1 133444444332 22346777777754322222 222222 22222 347788
Q ss_pred HHHHHHHH
Q psy852 748 LAYKRSFF 755 (891)
Q Consensus 748 Id~li~~L 755 (891)
++.+++.|
T Consensus 446 ~~~~~~~~ 453 (454)
T TIGR00474 446 EELLIEAL 453 (454)
T ss_pred HHHHHHHh
Confidence 88887765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.014 Score=66.52 Aligned_cols=244 Identities=8% Similarity=-0.016 Sum_probs=140.3
Q ss_pred HHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEE
Q psy852 453 EGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKI 532 (891)
Q Consensus 453 ~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~ 532 (891)
++.+.-.++ +|+ ++.|+++++..++.+.- + +.-.|++++-.+.....++...|.+++.
T Consensus 88 a~~~~v~~e-~I~--it~Gs~~ai~~~~~~l~----~---------------~gd~Vli~~P~y~~~~~~~~~~g~~~~~ 145 (370)
T PRK09105 88 AAQEGLPAD-HVM--AYAGSSEPLNYAVLAFT----S---------------PTAGLVTADPTYEAGWRAADAQGAPVAK 145 (370)
T ss_pred HHHhCcChh-hEE--EcCChHHHHHHHHHHHc----C---------------CCCEEEEeCCChHHHHHHHHHcCCeEEE
Confidence 333433344 566 67899998887765431 1 1123666777788888888899999999
Q ss_pred ecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhh-----------hhcC----C----
Q psy852 533 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYR-----------KSQG----I---- 579 (891)
Q Consensus 533 Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~-----------~ldG----i---- 579 (891)
+|.++++.+|+++|++.. + +...++++ +-.|++. |.+ .+.+ +
T Consensus 146 v~~~~~~~~d~~~l~~~~-~----~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~ 220 (370)
T PRK09105 146 VPLRADGAHDVKAMLAAD-P----NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVA 220 (370)
T ss_pred ecCCCCCCCCHHHHHhcC-C----CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHh
Confidence 999888999999998762 1 11122332 3355554 100 0100 0
Q ss_pred CCccEEEE-cCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 580 EYADSFNV-NVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 580 ~~aDSIs~-d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
..-+.|.+ +..|.++.| .-+|+++.... .+ +.+... .+ +. ...+.++.+...+...
T Consensus 221 ~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~-~i-~~l~~~-~~-------------~~------~~~~~~~aa~~~L~~~ 278 (370)
T PRK09105 221 QRKDLIVLRTFSKLYGMAGMRLGLAAARPD-LL-AKLARF-GH-------------NP------LPVPAAAAGLASLRDP 278 (370)
T ss_pred hCCCEEEEecccHhhcCCccceeeeecCHH-HH-HHHHhc-CC-------------CC------cCHHHHHHHHHHHhCH
Confidence 12245665 566766534 34777775322 22 211110 00 00 1112334444444333
Q ss_pred h-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 658 G-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 658 G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
. +++..++..++.+++.+.|++. ++++. +++.+.+.+++. . ...++.+.|.++|+.+.... ......+
T Consensus 279 ~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~~~f~~~~~~-~-------~~~~l~~~L~~~gI~v~~~~-~~~~~~~ 347 (370)
T PRK09105 279 KLVPQRRAENAAVREDTIAWLKKK-GYKCT-PSQANCFMVDVK-R-------PAKAVADAMAKQGVFIGRSW-PIWPNWV 347 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCCcC-CCCCcEEEEeCC-C-------CHHHHHHHHHHCCcEEecCC-CCCCCeE
Confidence 3 4445566677888899999885 66654 355666555553 1 24678888888898752221 1123456
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++ +++++++++++|+++.
T Consensus 348 Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 348 RVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred EEEcC---CHHHHHHHHHHHHHHh
Confidence 8876 6788999999998653
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.028 Score=64.46 Aligned_cols=246 Identities=12% Similarity=0.064 Sum_probs=133.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+. .. +...|+++.-.+......+...|++++.+|.++++.+|
T Consensus 91 ~i~--~t~G~~~~l~~~~~~~----~~---------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d 149 (389)
T PRK05957 91 AIV--VTAGSNMAFMNAILAI----TD---------------PGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQ 149 (389)
T ss_pred eEE--EeCChHHHHHHHHHHh----cC---------------CCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcC
Confidence 455 6788888876665443 10 11236666555544445556778999999999889999
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------CCC------Ccc----E
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------GIE------YAD----S 584 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------Gi~------~aD----S 584 (891)
+++|++++++.++ .++++ +..|+.. |+++ .| +.. ..| .
T Consensus 150 ~~~l~~~i~~~~k----lv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 225 (389)
T PRK05957 150 PEAIEQAITPKTR----AIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHT 225 (389)
T ss_pred HHHHHHhcCcCce----EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcE
Confidence 9999999875321 22222 2456543 3221 11 100 011 1
Q ss_pred E-EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhHH
Q psy852 585 F-NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGLQ 660 (891)
Q Consensus 585 I-s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~~ 660 (891)
| .-+..|.++.| .=+|++++.++ +.+.+.....+ .... ...+.+..+...+ +..-++
T Consensus 226 i~~~S~SK~~g~~GlRiG~~~~~~~--~~~~~~~~~~~-------------~~~~----~~~~~q~~~~~~l~~~~~~~~ 286 (389)
T PRK05957 226 ISLYSLSKAYGFASWRIGYMVIPIH--LLEAIKKIQDT-------------ILIC----PPVVSQYAALGALQVGKSYCQ 286 (389)
T ss_pred EEEecchhhccCccceeEEEecCHH--HHHHHHHHHhh-------------cccC----CCcHHHHHHHHHHhCChHHHH
Confidence 2 23355766433 22666665332 21211100000 0000 0113344444444 223356
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCeEE
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQNDEV 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~~l 736 (891)
+..+...+.++++.+.|++++++..+.+++.+ .+.+++.+ +....++.++|. +.|+.+..+... .+...+
T Consensus 287 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~i 360 (389)
T PRK05957 287 QHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNT------DLNDFELVKQLIREYRVAVIPGTTFGMKNGCYL 360 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCC------CCChHHHHHHHHHHCCEEEccchhhCCCCCCEE
Confidence 66677778888899999887764233445543 45566642 123567888886 478875554432 223456
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++.. +.+++++.++.|.+.+
T Consensus 361 Ris~~~~-~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 361 RIAYGAL-QKATAKEGIERLVQGL 383 (389)
T ss_pred EEEEecC-CHHHHHHHHHHHHHHH
Confidence 887653 5777777777776655
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0083 Score=70.03 Aligned_cols=214 Identities=13% Similarity=0.083 Sum_probs=119.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH----HHHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~----Kaa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|+.++..++... .+ +.-.|+++...|.... ..+...|++++.++.+ |+
T Consensus 84 ~~~sG~~Ai~~al~~l----l~---------------~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-----d~ 139 (431)
T PRK08248 84 AVSSGQAAITYSILNI----AS---------------AGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-----DP 139 (431)
T ss_pred EECCHHHHHHHHHHHH----hC---------------CCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC-----CH
Confidence 5678888888777553 11 1124667776665433 3344578888888763 88
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.+ ..+++. +..|... |+++ +|+. -++|-+..+.|||+++|
T Consensus 140 e~l~~ai~~~t----klV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~ 215 (431)
T PRK08248 140 ENFEAAITDKT----KALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGH 215 (431)
T ss_pred HHHHHhcCCCC----eEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCC
Confidence 99998886532 122222 1223332 3331 2221 36899999999999998
Q ss_pred c-ccEEEEEeCCccchhhhccCCCccccCCCCCccc----c-------------CCcccccccccchHHHHHHHHHHHhh
Q psy852 597 F-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDY----R-------------HWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 597 ~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~----~-------------~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
- .+|.+++.+....... .....++.... ..+.. . ......+-...+...|..++ |.+-
T Consensus 216 g~~~Gg~v~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r--gl~t 291 (431)
T PRK08248 216 GTSIGGVIVDSGKFDWKG-SGKFPGLTEPD-PSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQ--GLET 291 (431)
T ss_pred CCceEEEEEeCCcccccc-ccccccccCCc-cccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhc--CcCc
Confidence 6 3777777544321000 00000010000 00000 0 00000111233445565544 7778
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------c-eeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------R-LGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+..++++..++|.++++.|+++|.++-+.-| . .++++|.+++. .....++++.|.
T Consensus 292 l~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~-----~~~~~~f~~~l~ 364 (431)
T PRK08248 292 LHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGG-----VEAGKKLIDSVK 364 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCC-----HHHHHHHHHhCC
Confidence 8899999999999999999999987643211 1 35999999643 123445555554
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0084 Score=69.02 Aligned_cols=200 Identities=13% Similarity=0.125 Sum_probs=118.0
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH----HH
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AA 523 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K----aa 523 (891)
+.+.+++.+.. +. ++ .++||++++..++.+. .+ +.-.|+++...|.+... .+
T Consensus 66 le~~la~l~g~-~~--~v--~~ssG~~Ai~~al~al----~~---------------~Gd~Vi~~~~~y~~t~~~~~~~~ 121 (390)
T PRK08133 66 FQERLAALEGA-EA--CV--ATASGMAAILAVVMAL----LQ---------------AGDHVVSSRSLFGSTVSLFEKIF 121 (390)
T ss_pred HHHHHHHHhCC-Cc--EE--EECCHHHHHHHHHHHH----hC---------------CCCEEEEccCcchhHHHHHHHHH
Confidence 33445555543 22 33 4678899988776553 11 11247777777765443 34
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------hhhh-----hcC---------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYRK-----SQG--------- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~~-----ldG--------- 578 (891)
...|++++.++.+ |+++++++|++.++ .+++ .+..|... |+++ +|.
T Consensus 122 ~~~G~~v~~vd~~-----d~~~l~~~i~~~tk----lV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~ 192 (390)
T PRK08133 122 ARFGIETTFVDLT-----DLDAWRAAVRPNTK----LFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQ 192 (390)
T ss_pred HHcCcEEEEECCC-----CHHHHHHhcCcCCe----EEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 4578888888874 78889888865321 2222 23344443 3331 222
Q ss_pred -C-CCccEEEEcCcccCCcccc-cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH
Q psy852 579 -I-EYADSFNVNVNKWLLTAFD-SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG 655 (891)
Q Consensus 579 -i-~~aDSIs~d~HK~L~~P~g-~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG 655 (891)
+ -++|-+..++||+++++-. .|.+++.++..+.+.. .++.. . +-....+..|..++ |
T Consensus 193 pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~----~~~~~----------~----g~~~~~~~a~~~l~--g 252 (390)
T PRK08133 193 PLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVF----GFLRT----------A----GPTLSPFNAWVFLK--G 252 (390)
T ss_pred chhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHH----HHHHH----------h----CCCCCHHHHHHHHc--c
Confidence 1 2479999999999987754 4444444443322111 11110 0 11123345566554 5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEEecC
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFRLRS 700 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr~~~ 700 (891)
.+.+..++++..++++++++.|++.|.++-+.-| -.++++|.+++
T Consensus 253 l~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 314 (390)
T PRK08133 253 LETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG 314 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 6688899999999999999999999887654222 13699999964
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.025 Score=65.61 Aligned_cols=246 Identities=11% Similarity=0.091 Sum_probs=137.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~m 541 (891)
+|+ +|+|+++++..++.+. . .+.-.|++.+-.+......+...|.+++.+|.++ ++.+
T Consensus 117 ~I~--vt~G~~~al~~~~~~l----~---------------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 175 (413)
T PLN00175 117 EVT--VTSGCTEAIAATILGL----I---------------NPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAV 175 (413)
T ss_pred CEE--EeCCHHHHHHHHHHHh----C---------------CCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCC
Confidence 355 6888899877665532 1 1122466667778888888888899999999874 5799
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC----------------CC---cc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI----------------EY---AD 583 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi----------------~~---aD 583 (891)
|+++|++++.+.+ ..++++ +..|.+. |.++ .|.+ .. -.
T Consensus 176 ~~~~l~~~~~~~~----k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~v 251 (413)
T PLN00175 176 PEDELKAAFTSKT----RAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERT 251 (413)
T ss_pred CHHHHHHhcCcCc----eEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcE
Confidence 9999999986532 122332 3345543 2221 1110 00 01
Q ss_pred EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHH
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQ 660 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~ 660 (891)
-..-+..|.++.| .-+|+++.... .+ ..+.....+ ..+ ....+.++++.+.+. ..-++
T Consensus 252 i~i~SfSK~~~~~G~RiG~~v~~~~-l~-~~l~~~~~~-----------~~~------~~s~~~Q~a~~~~l~~~~~~~~ 312 (413)
T PLN00175 252 VTMNSLGKTFSLTGWKIGWAIAPPH-LT-WGVRQAHSF-----------LTF------ATATPMQWAAVAALRAPESYYE 312 (413)
T ss_pred EEEecchhhccCcchheeeeEeCHH-HH-HHHHHHHhh-----------ccC------CCCHHHHHHHHHHHhCCHHHHH
Confidence 1223556766544 34565554322 11 111100000 000 112234455555552 23355
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc-----cCCe
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ-----EQND 734 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~-----~g~~ 734 (891)
+..++..+.++.+.+.|++. ++++..+.....+.+++.+.+ . ....++.+.|. +.|+.+.-++.. .+..
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~~f~~~~~~~~~---~-~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~ 387 (413)
T PLN00175 313 ELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYFVMVDHTPFG---F-ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKN 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEeccccC---C-CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCC
Confidence 66667777888899999886 577654333334666654321 0 12457777775 569876655432 1234
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+ +++.. +++++++.++.|++.+
T Consensus 388 ~iRls~~~--~~e~l~~~~~rL~~~~ 411 (413)
T PLN00175 388 LVRFAFCK--DEETLRAAVERMKTKL 411 (413)
T ss_pred EEEEEEcC--CHHHHHHHHHHHHHHH
Confidence 56 88763 6899999998887654
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0035 Score=71.60 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=67.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-++.....++...+.+++.++.+ +++.+|+++|++.+++.. -+|.++.-+|.||.+-+ +++|.
T Consensus 115 ~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NPtG~~~s~~~~~~l~ 188 (384)
T PRK06348 115 EVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKT------KAIILNSPNNPTGAVFSKETLEEIA 188 (384)
T ss_pred EEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCc------cEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 36777777777777777777788888874 345699999999886432 24444567899999865 77888
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|++++++|.+|-+|+.+.
T Consensus 189 ~~a~~~~~~ii~De~y~~~~ 208 (384)
T PRK06348 189 KIAIEYDLFIISDEVYDGFS 208 (384)
T ss_pred HHHHHCCeEEEEecccccce
Confidence 88999999999999996543
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.01 Score=67.93 Aligned_cols=243 Identities=9% Similarity=0.006 Sum_probs=132.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CCCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~G~m 541 (891)
+++ +|+|+++++..++.+.. .+...|++..-.|.+...++...|.+++.+|.+ +++.+
T Consensus 93 ~i~--~t~G~~~al~~~~~~~~-------------------~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 151 (386)
T PRK09082 93 EIT--VTAGATEALFAAILALV-------------------RPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRV 151 (386)
T ss_pred cEE--EeCCHHHHHHHHHHHHc-------------------CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccC
Confidence 455 68899998887765421 122357788889999999998889999999996 46889
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC-----------CCCc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG-----------IEYA 582 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG-----------i~~a 582 (891)
|+++|++++++.. ..++++ +-.|++. |.++ .++ ...-
T Consensus 152 d~~~l~~~~~~~~----~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~ 227 (386)
T PRK09082 152 DWQRFAAAISPRT----RLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRER 227 (386)
T ss_pred CHHHHHHhcCccc----eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCc
Confidence 9999999986421 223332 3456542 3221 011 0001
Q ss_pred cEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhH
Q psy852 583 DSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGL 659 (891)
Q Consensus 583 DSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~ 659 (891)
.-..-++.|.++.|- -+|+++.. ++.+ ..+.....+ ..+ ....+.++++...+ +..-+
T Consensus 228 ~i~~~S~SK~~~~~G~RiG~iv~~-~~l~-~~~~~~~~~-----------~~~------~~~~~~q~~~~~~l~~~~~~~ 288 (386)
T PRK09082 228 AFVVSSFGKTYHVTGWKVGYCVAP-AALS-AEFRKVHQY-----------NTF------TVNTPAQLALADYLRAEPEHY 288 (386)
T ss_pred EEEEeechhhccchhhhhhhhhCC-HHHH-HHHHHHHhh-----------hcC------CCChHHHHHHHHHHhCChHHH
Confidence 122234566655442 24555432 1111 111100000 001 11122333333333 22334
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHH-HhCCcEEEeeccc----cCC
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDI-NASGRLHMVPASQ----EQN 733 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L-~~~G~~~~s~s~~----~g~ 733 (891)
++..+...++.+++.+.|++. ++++. +++.+ .++++++... +....++.+.| .+.|+.+.-+... .+.
T Consensus 289 ~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~ 362 (386)
T PRK09082 289 LELPAFYQAKRDRFRAALANS-RFKLL-PCEGTYFQLVDYSAIS----DLDDVEFCQWLTREHGVAAIPLSVFYADPFPH 362 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCccc-CCCeeEEEEEeccccC----CCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCC
Confidence 445555567778888888874 56654 34444 4556764210 11345677776 4568775544432 123
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~e 757 (891)
..+ +++.. +++++++.++.|++
T Consensus 363 ~~~Ri~~~~--~~~~l~~~~~rl~~ 385 (386)
T PRK09082 363 RLVRLCFAK--QEETLDAAAERLCQ 385 (386)
T ss_pred CEEEEEecC--CHHHHHHHHHHHhh
Confidence 456 88764 67888888877764
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.018 Score=66.42 Aligned_cols=251 Identities=12% Similarity=0.093 Sum_probs=151.0
Q ss_pred cCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-
Q psy852 458 RDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD- 536 (891)
Q Consensus 458 ~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d- 536 (891)
-.+.-+|+ +|.|++++++.++.+.-+ +.-.|++.+=.-.+......+.|++++.+|++
T Consensus 86 ~~~~~eii--vt~Ga~~al~~~~~a~~~-------------------pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~ 144 (393)
T COG0436 86 VDPEEEII--VTAGAKEALFLAFLALLN-------------------PGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDE 144 (393)
T ss_pred CCCCCeEE--EeCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCc
Confidence 34444577 789999999988877422 11125555555556666677899999999975
Q ss_pred --CCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC------CC
Q psy852 537 --DKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG------IE 580 (891)
Q Consensus 537 --~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG------i~ 580 (891)
.+.++|++.|++++.+.++ .++++ +-.|++. |.+| .+| ++
T Consensus 145 ~~~~f~~d~~~l~~~i~~ktk----~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~ 220 (393)
T COG0436 145 EENGFKPDLEDLEAAITPKTK----AIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILE 220 (393)
T ss_pred CccCCcCCHHHHHhhcCccce----EEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhh
Confidence 4799999999999998433 44454 3466665 2221 222 11
Q ss_pred Cc----cEEEE-cCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH
Q psy852 581 YA----DSFNV-NVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 581 ~a----DSIs~-d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l 654 (891)
.. ..|++ +..|..+.+ .=+|+++..++..+......+ .|+ .-+ ...+.+.++...+
T Consensus 221 ~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~-~~~--------------~~~---~~~~~Q~aa~~aL 282 (393)
T COG0436 221 LAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLK-SYL--------------TSC---APTPAQYAAIAAL 282 (393)
T ss_pred cCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHH-Hhc--------------ccC---CCHHHHHHHHHHh
Confidence 12 26666 578877765 447777766433222111000 010 001 1123444555555
Q ss_pred HH----hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEE-EEecCCcchhhhhhHHHHHHHHHh-CCcEEEeec
Q psy852 655 GL----SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVC-FRLRSENNLIADQNNRKLLEDINA-SGRLHMVPA 728 (891)
Q Consensus 655 G~----~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~-Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s 728 (891)
.. ..++.+.+...+.++.+.+.|.+.+++.+..+|+-.... .+++.. .....+...|.+ .|++++-++
T Consensus 283 ~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~------~d~~~f~~~Ll~~~gV~v~PG~ 356 (393)
T COG0436 283 NGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL------LDSEEFAKKLLEEAGVAVVPGS 356 (393)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC------CCHHHHHHHHHHhCCEEEeccc
Confidence 42 345555567788899999999999999998866554443 444321 345677777766 466654444
Q ss_pred ccc---CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 SQE---QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 ~~~---g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
... +.+.+ +++... .+++++.++.|.+..
T Consensus 357 ~Fg~~~g~~~vRis~~~~--~~~l~~a~~rl~~~~ 389 (393)
T COG0436 357 GFGEPPGEGYVRLSLATS--EETLEEALRRLARFL 389 (393)
T ss_pred ccCCCCCCCeEEEEEecC--HHHHHHHHHHHHHHH
Confidence 332 33456 776544 388888888887665
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0032 Score=72.90 Aligned_cols=93 Identities=13% Similarity=-0.040 Sum_probs=69.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I~~ 219 (891)
|++..-........+...|.+++.|+++++ +.+|+++|++.++....++..+-+++.+--+|-||.+-+. ++|++
T Consensus 158 Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~ 237 (407)
T PLN02368 158 VLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILK 237 (407)
T ss_pred EEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHH
Confidence 555555666666667777789999998753 6899999999997643333335566676779999999555 56677
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|++++++|-.|-+|+.+
T Consensus 238 ~a~~~~~~II~DE~Y~~l 255 (407)
T PLN02368 238 FCYQERLVLLGDEVYQQN 255 (407)
T ss_pred HHHHcCCEEEEEcccccc
Confidence 889999999999999543
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.014 Score=68.34 Aligned_cols=218 Identities=14% Similarity=0.080 Sum_probs=115.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|+.++..++.+. .+ +.-.|+++...|.+....+. -.|++++.++ |. -|+
T Consensus 89 ~~sSG~aAi~~al~al----l~---------------~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~---~d~ 145 (436)
T PRK07812 89 LLASGQAAETFAILNL----AG---------------AGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP---DDL 145 (436)
T ss_pred EEccHHHHHHHHHHHH----hC---------------CCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---CCH
Confidence 4567788877776442 11 11236666667766554432 2466777765 22 288
Q ss_pred HHHHHHHHhhhhcCCccEEE---EecCCccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P 596 (891)
++++++|++.++ .+++ .+..|... |+++ +|+. .++|-+..++|||++++
T Consensus 146 e~l~~ai~~~tk----lV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~ 221 (436)
T PRK07812 146 DAWRAAVRPNTK----AFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGH 221 (436)
T ss_pred HHHHHhCCCCCe----EEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCC
Confidence 888888875321 1221 12234443 3331 3331 35899999999999877
Q ss_pred cc-cEEEEEeCCc-cchh-----hhccCCCccccCCCC--C--c--ccc-CCcccccccccchHHHHHHHHHHHhhHHHH
Q psy852 597 FD-SSCLWVADRY-KLTS-----ALVVDPLYLQHGHEG--A--I--DYR-HWGIPLSRRFRSLKLWFVIRTYGLSGLQKY 662 (891)
Q Consensus 597 ~g-~G~llvR~~~-~L~~-----~l~~~~~Yl~~~~e~--~--~--~~~-~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~ 662 (891)
-+ .|.+++.+.. .... ..+.++.|....... . + ... .+.-..+-.......|..+ .|...+..+
T Consensus 222 G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~--rgl~tL~~R 299 (436)
T PRK07812 222 GTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIA--QGLETLSLR 299 (436)
T ss_pred CCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHh--cCcCcHHHH
Confidence 33 5666664332 1100 001112221100000 0 0 000 0000001112234556443 488889999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCC------------------ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDV------------------RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~------------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+++..++|.++++.|+++|.++-+.-| -.++++|.+++. .....++++.|..
T Consensus 300 ~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~-----~~~~~~f~~~l~l 369 (436)
T PRK07812 300 IERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGG-----VEAGKAFVNALTL 369 (436)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCC-----HHHHHHHHHhCCc
Confidence 999999999999999999987533211 136999999742 1224455666543
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0029 Score=71.97 Aligned_cols=272 Identities=14% Similarity=0.025 Sum_probs=0.0
Q ss_pred CccccccCCCCCCHH-HHHHHHHHHhcCCCC-------CccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q psy852 17 HPRFHAYFPSGNSYP-SVLADMLSDAIGCIG-------FSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATT 88 (891)
Q Consensus 17 ~p~~~~~~~~~~~~~-~~~~~~l~~~~n~~~-------~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~t 88 (891)
|...+.|-+.+..+| .++..+-..++|.++ .+| -+|.+.++-.++.+.|.+|++.|++. .-+|
T Consensus 2 ~~~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisH-Rs~~F~~i~~~~~~~Lr~Ll~~P~~y-------~Vlf- 72 (364)
T PRK12462 2 HRNQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSH-RSSWFSSLLAQAEADLRDLLGIPDEY-------GVVF- 72 (364)
T ss_pred CcccceecCCCcCCCHHHHHHHHHHHhcccccCcccccccc-ccHHHHHHHHHHHHHHHHHhCCCCCC-------eEEE-
Q ss_pred CCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCe-EEEecCCCChHHHHHHHHcCCeEE
Q psy852 89 PNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKL-MAYCSKEAHSCVEKAAMMAFVRLK 167 (891)
Q Consensus 89 p~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~-~v~~S~~~H~Sv~kaa~~~~~~v~ 167 (891)
..+|||.+-.+..+++..... ..+ ++.+..-.+-....+.+++..++.
T Consensus 73 -------------------l~GggT~~~ea~~~Nll~~g~------------~~~~~~~tG~fg~r~~~ea~~~g~v~~~ 121 (364)
T PRK12462 73 -------------------LQGGSSLQFSMIPMNFSRPGA------------AAPEYVTTGYWSRKAIGEASRVAAMRVV 121 (364)
T ss_pred -------------------EeccHHHHHHHHHHHcCCCCC------------cEEEEEeCCHHHHHHHHHHHhcCCceEe
Q ss_pred EE--ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCC
Q psy852 168 IL--EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFR 245 (891)
Q Consensus 168 ~V--~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~ 245 (891)
.. +.+.....+++.+ .+.++.+ +|..|.-.|.+|+..| ++.+.++..+.||+.=
T Consensus 122 ~~~~~~~~~~~p~~~~~--~~~~d~~------~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS----------- 177 (364)
T PRK12462 122 WDGAASGYRTLPSLAEL--DWDARAP------FRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSS----------- 177 (364)
T ss_pred cCcCCCCCCcCCCHHHh--ccCCCCc------EEEEccCCCCceEecC-----cccccCCCeEEEEcCc-----------
Q ss_pred ccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccc
Q psy852 246 PFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQS 325 (891)
Q Consensus 246 ~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (891)
+..+..+++...
T Consensus 178 ----------------------~~~s~pid~~~~---------------------------------------------- 189 (364)
T PRK12462 178 ----------------------DFMSRPFDVEAY---------------------------------------------- 189 (364)
T ss_pred ----------------------hhhCCCCChHHc----------------------------------------------
Q ss_pred ccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCC
Q psy852 326 YRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE 405 (891)
Q Consensus 326 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~ 405 (891)
|-+.....|.++ |-|.+++++|++ .+...-...|.|+...
T Consensus 190 ------------------------------------dvi~agsQKnlg-P~Gltvvivs~~-al~~~~~~~p~~ldy~-- 229 (364)
T PRK12462 190 ------------------------------------GMVYAHAQKNLG-PAGVTVAIIRRA-LLERVPDTLPPMLDFR-- 229 (364)
T ss_pred ------------------------------------cEEEeeccccCC-CCceEEEEECHH-HHhhccccCCchhhHH--
Q ss_pred CcccccccccCCCCC-hhHHHHHHHHHHhcHH--HHHHHHHHHHHHHHHHHHhhccCCcc
Q psy852 406 GAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS--GLQKYIRRHCELAKLFEGKVRRDPRF 462 (891)
Q Consensus 406 ~~~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~--G~~~ii~~~lelAr~l~~~L~~~~~~ 462 (891)
..........+-+ +....+=.+++++-.+ |+..+.++..+.|+.+++.|.+.++|
T Consensus 230 --~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~ 287 (364)
T PRK12462 230 --THVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEV 287 (364)
T ss_pred --HHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCc
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0026 Score=73.33 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=104.7
Q ss_pred CHHH-HHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC-ccccccccCCCCCCC
Q psy852 29 SYPS-VLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND-IDMNIEDYMTPANQP 106 (891)
Q Consensus 29 ~~~~-~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~-~~~~~~~~~t~~~~~ 106 (891)
..|. +...+...+.+.+. .+..+....+|-+.+.+++.+-.|++.. |++ ++
T Consensus 41 ~~p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~-------------~~~eii------------- 93 (393)
T COG0436 41 PTPEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVD-------------PEEEII------------- 93 (393)
T ss_pred CCCHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCC-------------CCCeEE-------------
Confidence 3344 44444444444332 3334555678889999999999886533 111 21
Q ss_pred CcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC---CCCcccHHHHH
Q psy852 107 QSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD---DKNSLRGATLR 183 (891)
Q Consensus 107 ~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d---~~g~id~~~L~ 183 (891)
.|.|++. .....+ .+-... ++ -|++.+=.-.+......+.|.+++.|+++ .++.+|+++|+
T Consensus 94 -vt~Ga~~-al~~~~-~a~~~p------------GD-eVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~ 157 (393)
T COG0436 94 -VTAGAKE-ALFLAF-LALLNP------------GD-EVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLE 157 (393)
T ss_pred -EeCCHHH-HHHHHH-HHhcCC------------CC-EEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHH
Confidence 2446543 222221 111111 11 14443333334444447788899999975 37899999999
Q ss_pred HHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 184 QVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 184 ~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++.+.+ -+|+++.-+|.||++ +.+++|+++|++++++|..|-+|.++.
T Consensus 158 ~~i~~kt------k~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~ 209 (393)
T COG0436 158 AAITPKT------KAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELV 209 (393)
T ss_pred hhcCccc------eEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcc
Confidence 9999854 499999999999999 457788899999999999999996544
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0033 Score=71.92 Aligned_cols=87 Identities=9% Similarity=0.009 Sum_probs=68.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH---HHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA---EIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~ 218 (891)
.|++..-++.....++...|.+++.|+++++ ..+|+++|++.+.+. +-+|.++-.+|.||.+-+.+ +|+
T Consensus 120 ~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPTG~~~s~~~~~~l~ 193 (389)
T PRK08068 120 TILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEK------AKLMYLNYPNNPTGAVATKAFFEETV 193 (389)
T ss_pred EEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCCcCCHHHHHHHH
Confidence 3677777777777777777889999999753 468999999888543 23566666789999998874 777
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|-||+.
T Consensus 194 ~la~~~~~~ii~Deay~~ 211 (389)
T PRK08068 194 AFAKKHNIGVVHDFAYGA 211 (389)
T ss_pred HHHHHcCeEEEEehhhhh
Confidence 789999999999999954
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.025 Score=65.17 Aligned_cols=255 Identities=9% Similarity=0.045 Sum_probs=139.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
+|+ +++|+++++..++.+... +.-.|+++.-.+.....++...|++++.+|.+ .++.
T Consensus 98 ~ii--~t~G~t~al~~~~~~l~~-------------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 156 (403)
T TIGR01265 98 DVV--LTSGCSQAIEICIEALAN-------------------PGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWE 156 (403)
T ss_pred HEE--EecChHHHHHHHHHHhCC-------------------CCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCc
Confidence 455 688999998888776421 11236666667777777777888999988874 3578
Q ss_pred cCHHHHHHHHHhhhhcCCccEEE--EecCCccc-----------hhhh-----hcCC---------C---------CccE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFV--STTLGTTS-----------CYRK-----SQGI---------E---------YADS 584 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~V--vataGTT~-----------c~~~-----ldGi---------~---------~aDS 584 (891)
+|++++++++.+.+. ..++. .+..|++. |.++ +|.. . ...-
T Consensus 157 ~d~~~l~~~~~~~~~---~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~v 233 (403)
T TIGR01265 157 IDLDGLEALADEKTV---AIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPV 233 (403)
T ss_pred cCHHHHHHHhCcCcc---EEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcE
Confidence 999999998865321 11221 23466663 3221 1110 0 0012
Q ss_pred E-EEcCcccCCcc-cccEEEEEeCC-ccchhhhccC-CCccccCCCCCccccCCcccccccccchHHHHHHHHH---HHh
Q psy852 585 F-NVNVNKWLLTA-FDSSCLWVADR-YKLTSALVVD-PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY---GLS 657 (891)
Q Consensus 585 I-s~d~HK~L~~P-~g~G~llvR~~-~~L~~~l~~~-~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l---G~~ 657 (891)
| .-+..|.++.| .-+|+++..+. ..+.+.+... ..+.. .... ...+.+-+....+ ...
T Consensus 234 i~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~----~~~~~q~~~~~~l~~~~~~ 298 (403)
T TIGR01265 234 LSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ-----------RILG----PATIVQGALPDILENTPQE 298 (403)
T ss_pred EEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhh-----------hhcC----CChHHHHHHHHHHHhChHH
Confidence 2 23678876666 45787777543 1111100000 00000 0000 0112222222222 223
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHH-HhCCcEEEeeccccCCeEE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDI-NASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L-~~~G~~~~s~s~~~g~~~l 736 (891)
-+++..+...+.++++.+.|+..+++.+..+...+-+.++++....... ....++...| .+.|+.+..+........+
T Consensus 299 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~i 377 (403)
T TIGR01265 299 FFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEI-KDDVDFCEKLVREESVICLPGSAFGLPNWV 377 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccCCC-CCHHHHHHHHHHhCCEEEeCccccCCCCeE
Confidence 3455566677778889999988877776555556677777753210000 1245677775 5678876655544334556
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++.. .++.+++.++.|.+++
T Consensus 378 Ris~~~--~~~~l~~~l~~l~~~~ 399 (403)
T TIGR01265 378 RITITV--PESMLEEACSRIKEFC 399 (403)
T ss_pred EEEecC--CHHHHHHHHHHHHHHH
Confidence 88774 4677777777776554
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0024 Score=73.41 Aligned_cols=88 Identities=10% Similarity=-0.005 Sum_probs=71.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-+|.....++...+.+++.+++|. ++.+|+++|++.+... +-+|+++..+|.||.+-+ +++|+
T Consensus 121 ~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~~~~~~~~i~ 194 (404)
T PRK09265 121 EVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPR------TKAIVIINPNNPTGAVYSKELLEEIV 194 (404)
T ss_pred EEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCcCCCHHHHHHHH
Confidence 377788889888888876677888888764 4679999999987543 336666678999999988 88999
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++|++|.+|-+|+.+
T Consensus 195 ~~a~~~~~~ii~De~y~~~ 213 (404)
T PRK09265 195 EIARQHNLIIFADEIYDKI 213 (404)
T ss_pred HHHHHCCCEEEEehhhhhc
Confidence 9999999999999999643
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0091 Score=67.06 Aligned_cols=80 Identities=16% Similarity=-0.013 Sum_probs=63.1
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-++......+...|.+++.|+.++++.+|+++|++ .. .+|+++..+|.||.+-|.+++.++++.+
T Consensus 104 vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~~------~~v~~~~P~NPtG~~~~~~~~~~l~~~~ 173 (353)
T PRK05387 104 LLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR----PN------GGIIFPNPNAPTGIALPLAEIERILAAN 173 (353)
T ss_pred EEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh----cC------CEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 6665555544444456778899999999889999999873 11 2566777899999999999999999876
Q ss_pred -CCceeeeccc
Q psy852 225 -DVWLHVDGAY 234 (891)
Q Consensus 225 -~~~lHvDaA~ 234 (891)
++++.+|-+|
T Consensus 174 ~~~~livDe~y 184 (353)
T PRK05387 174 PDSVVVIDEAY 184 (353)
T ss_pred CCcEEEEeCcc
Confidence 8889999988
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0033 Score=68.90 Aligned_cols=175 Identities=16% Similarity=0.099 Sum_probs=119.8
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCC
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g 250 (891)
-|-.+.+.++++++.++.++ .+|..+..+--||-.-++.+|.++++++|+.+--|-|+.-..+
T Consensus 148 ~~~~~~~~P~~~~~~~~dd~------AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGav----------- 210 (407)
T COG3844 148 YDLEGVIAPRALEEAITDDV------AVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAV----------- 210 (407)
T ss_pred ccceeeeChHHHHHhhccce------EEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCc-----------
Confidence 45678888999999999885 6999999999999999999999999999877666665511000
Q ss_pred CcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccc
Q psy852 251 KTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAI 330 (891)
Q Consensus 251 ~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (891)
T Consensus 211 -------------------------------------------------------------------------------- 210 (407)
T COG3844 211 -------------------------------------------------------------------------------- 210 (407)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCC-ccCCceEEEEeccccchhhcccCccccCCCCCCccc
Q psy852 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAID 409 (891)
Q Consensus 331 ~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~-~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~ 409 (891)
.+-|| -..+|.-.-..||++. +|-+.+.+++.++..-. ....-..+..+... +.
T Consensus 211 -p~~Lh---------------------~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~-~~~~lsgW~gha~p--f~ 265 (407)
T COG3844 211 -PVDLH---------------------AAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRER-SWPPLSGWWGHARP--FA 265 (407)
T ss_pred -ceeec---------------------ccCCCeeeeeeceeccCCCCCceeEEeccccccc-cccccccccCCCCc--ch
Confidence 11122 1147899999999965 58888888887653221 12222334433211 11
Q ss_pred cc-cc-ccCCCCCh--------hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccC-C--ccccccC
Q psy852 410 YR-HW-GIPLSRRF--------RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD-P--RFEISND 467 (891)
Q Consensus 410 ~~-~~-~~~~sr~~--------~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~-~--~~eVv~~ 467 (891)
.. .| ..+|-|+| ...++-.+|..++.-++.+..++.+.++.||.+++++. + ++++++|
T Consensus 266 m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tP 336 (407)
T COG3844 266 MEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTP 336 (407)
T ss_pred hhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEecc
Confidence 10 11 22344443 23456677888889999999999999999999999763 3 5777765
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.041 Score=65.57 Aligned_cols=164 Identities=11% Similarity=0.055 Sum_probs=87.5
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-+++ -|.++.= ++.|+++++++ +.+.+....... .. -....|..+ -+..+...-++|+.+-.+
T Consensus 322 PDivtl--gK~lggG~~PigAv~~~~~--i~d~~~~~~~~~-----~~-~~h~~T~~g-nPl~~Aaala~Le~i~~~--- 387 (504)
T PLN02760 322 PDLVSL--AKALSSAYMPIGAVLVSPE--ISDVIHSQSNKL-----GS-FAHGFTYSG-HPVSCAVALEALKIYKER--- 387 (504)
T ss_pred CcEEEe--cccccCCccccceEeecHH--HHhhhhcccccc-----cC-cccCCCCCC-CHHHHHHHHHHHHHHHhC---
Confidence 686555 7887653 25677888754 223222110000 00 001112221 122223333444444443
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCc-e-eEEEEEecCCcc--h---hhhhhHHHHHHHHHhCCcEEEeeccccCC
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVR-L-GLVCFRLRSENN--L---IADQNNRKLLEDINASGRLHMVPASQEQN 733 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-~-~iV~Fr~~~~~~--~---~~d~ln~~L~~~L~~~G~~~~s~s~~~g~ 733 (891)
+.+++..++.++|.+.|+++....++.+.. . .++.+.+..... + .-..+...+.+.+.++|++... .+
T Consensus 388 ~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~----~g- 462 (504)
T PLN02760 388 NIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRV----AG- 462 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEe----cC-
Confidence 456677778888888887653332222211 1 355555533210 0 0012456788889999987432 12
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRMLGLVCF 764 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~~~~~~ 764 (891)
..+ +++...+|++|||++++++++.+..+++
T Consensus 463 ~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~ 494 (504)
T PLN02760 463 DNIMMSPPLIITPEEVDELISIYGKALKATEE 494 (504)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345 7777779999999999999988865543
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.017 Score=66.47 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=102.3
Q ss_pred EEEecccchHHHHHHH-HH---cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKAA-MM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa-~l---~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c 572 (891)
.|+++...+.+..... .+ .+++++.++. .|+++|+++|+++++ .+++. +..|+.. |
T Consensus 102 ~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~l~~~i~~~tk----lV~ie~p~NPtg~~~dl~~I~~la 172 (388)
T PRK07811 102 HIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDAVRAAITPRTK----LIWVETPTNPLLSITDIAALAELA 172 (388)
T ss_pred EEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHHHHHhcCcCCe----EEEEECCCCCcceecCHHHHHHHH
Confidence 3667777776554433 22 3566666654 488888888865321 22221 1223332 3
Q ss_pred hhh-----hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ +|. + .++|.+..+.+||+++|-+ .|+++++++.... .+. +++.. .
T Consensus 173 ~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~-~~~----~~~~~---------~ 238 (388)
T PRK07811 173 HDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDE-AFA----FLQNG---------A 238 (388)
T ss_pred HHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHH-HHH----HHHHh---------c
Confidence 321 111 1 3589999999999998865 5777777664322 111 11100 0
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-----------------eeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-----------------LGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-----------------~~iV~Fr 697 (891)
+.....+..|..++ +.+.+..++++..++++.+.+.|+++|.++-+.-|. .++++|.
T Consensus 239 ----g~~~s~~~a~l~~~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~ 312 (388)
T PRK07811 239 ----GAVPGPFDAYLTLR--GLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVR 312 (388)
T ss_pred ----CCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEE
Confidence 00112233454444 455677888999999999999999999876432121 3699999
Q ss_pred ecCCcchhhhhhHHHHHHHHHh
Q psy852 698 LRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 698 ~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+++. .....++++.|.-
T Consensus 313 ~~~~-----~~~~~~f~~~l~~ 329 (388)
T PRK07811 313 LAGG-----EEAARDFCARTKV 329 (388)
T ss_pred eCCC-----HHHHHHHHHhCCc
Confidence 9742 1223455555543
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0078 Score=69.21 Aligned_cols=197 Identities=14% Similarity=0.132 Sum_probs=113.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH---cCceEEEecCCCCCCcCHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l---~gv~v~~Vp~d~~G~mD~~ 544 (891)
++++|+.++..++.+. .+ +...|+++...|.+....+.. .+++++.++. |++
T Consensus 73 ~~~sG~~Ai~~~l~~l----l~---------------~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~------d~~ 127 (385)
T PRK08574 73 AFNSGMAAISTLFFSL----LK---------------AGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP------STE 127 (385)
T ss_pred EeCCHHHHHHHHHHHH----hC---------------CCCEEEEcCCCchhHHHHHHHhhccCcEEEEECC------CHH
Confidence 3567888888776543 11 122477778888877666532 3566655432 577
Q ss_pred HHHHHHHh-hhhcCCccEEEEecCC----ccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCc
Q psy852 545 TLRQVMQQ-DETMGYIPFFVSTTLG----TTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLT 595 (891)
Q Consensus 545 ~Le~aI~~-d~~~g~ip~~VvataG----TT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~ 595 (891)
+|+++|++ .+ -++++.+.+ ... |+++ +|. + .++|.+..|.|||+++
T Consensus 128 ~l~~~i~~~~t-----klV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g 202 (385)
T PRK08574 128 DIIEAIKEGRT-----KLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAG 202 (385)
T ss_pred HHHHhcCccCc-----eEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecC
Confidence 88887764 21 122222222 221 3321 121 1 2489999999999999
Q ss_pred ccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy852 596 AFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673 (891)
Q Consensus 596 P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L 673 (891)
|-+ .|++++.+++......... .+ + +-....+..|..++ |.+-+..++++..++|+++
T Consensus 203 ~~d~~gG~vi~~~~~~~~~~~~~~-~~-------------~----g~~~~p~~a~l~l~--~l~tL~~R~~~~~~na~~l 262 (385)
T PRK08574 203 HNDVVGGVAVAWSGEFLEELWEWR-RR-------------L----GTIMQPFEAYLVLR--GLKTLEVRFERQCRNAMAI 262 (385)
T ss_pred CCCceeEEEEECcHHHHHHHHHHH-Hh-------------c----CCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHH
Confidence 876 3667776654332211000 00 0 11122233454444 6677888999999999999
Q ss_pred HHHhccCCCcEEeC-C-----C-------------ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 674 EGKVRRDPRFEISN-D-----V-------------RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 674 ~~~L~~~~~~eil~-~-----~-------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
.+.|++.|.++-+. | | -.++++|.+++. .+...++.+.|+-
T Consensus 263 a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~-----~~~~~~~~~~l~l 322 (385)
T PRK08574 263 AEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGG-----RDAVLKFLRSLKL 322 (385)
T ss_pred HHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCC-----HHHHHHHHHcCCc
Confidence 99999988875321 1 1 135999999742 2234455555543
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.005 Score=70.97 Aligned_cols=203 Identities=14% Similarity=0.100 Sum_probs=118.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH----HHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K----aa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
+++||++++..++.+. .+ +.-.|+++...|.+... .+...|++++.++.+ +.
T Consensus 85 ~~~sgt~Ai~~~l~al----~~---------------~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-----~~ 140 (394)
T PRK07050 85 LQPSGLAAISLVYFGL----VK---------------AGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-----IG 140 (394)
T ss_pred EeccHHHHHHHHHHHH----hC---------------CCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC-----CH
Confidence 5678999999887664 11 12247777777766443 345578888877653 45
Q ss_pred HHHHHHHHhhhhcCCccEEEEecC---Cccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTL---GTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vvata---GTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.+ ..+++.+.. |... |+++ +|+. .++|....+.+|++++.
T Consensus 141 ~~l~~~i~~~t----klV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~ 216 (394)
T PRK07050 141 AGIADLIQPNT----RLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGG 216 (394)
T ss_pred HHHHHhcCCCC----eEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCC
Confidence 67888776532 122322222 1211 3321 2221 24799999999999876
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|++++++++...+.... ..++ +. ...+...|.+++ |...+..++++..++|.+++
T Consensus 217 ~~~~gG~v~~~~~~~~~~~~~~-~~~~-------------G~----~~~~~~a~l~lr--~l~tl~~Rl~~~~~~a~~la 276 (394)
T PRK07050 217 SDVLMGATITADAELHAKLKLA-RMRL-------------GI----GVSADDCSLVLR--GLPSLQVRLAAHDRSALEVA 276 (394)
T ss_pred CCeeEEEEEECCHHHHHHHHHH-HHhc-------------CC----CCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHH
Confidence 65 577777766433221100 0000 11 112334466654 56677788999999999999
Q ss_pred HHhccCCCcEEeCCC-----------------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 675 GKVRRDPRFEISNDV-----------------RLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 675 ~~L~~~~~~eil~~~-----------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
+.|+++|.++-+..| ..++++|.+.+... .....++.+.|..-+
T Consensus 277 ~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~---~~~~~~~~~~l~~~~ 337 (394)
T PRK07050 277 EWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYS---PAQVDAFVEALELFA 337 (394)
T ss_pred HHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCC---HHHHHHHHHcCCCCe
Confidence 999998887644211 13688999864210 123445666665543
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.03 Score=63.47 Aligned_cols=143 Identities=10% Similarity=0.084 Sum_probs=81.7
Q ss_pred cEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHH
Q psy852 583 DSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKY 662 (891)
Q Consensus 583 DSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~ 662 (891)
|.++ .+|.++..+.+|+++...+ +.+.+.... . ...++ .-++.....+.+|+.+... +.
T Consensus 233 d~~t--~sK~~~~G~riG~~~~~~~--~~~~~~~~~----~-------~~~~~---~~~~~~~aa~aaL~~~~~~---~~ 291 (379)
T TIGR00707 233 DIIT--LAKGLGGGVPIGATLAKEE--VAEAFTPGD----H-------GSTFG---GNPLACAAALAVLEVIEKE---RL 291 (379)
T ss_pred CEEE--EcccccCCcccEEEEEcHH--HHhhhcCCC----C-------CCCCC---CCHHHHHHHHHHHHHHHhh---hH
Confidence 5454 5899996678898887533 222221100 0 00111 1122333445555555433 34
Q ss_pred HHHHHHHHHHHHHHhccCC-CcEEe-CCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEe
Q psy852 663 IRRHCELAKLFEGKVRRDP-RFEIS-NDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FEL 739 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~-~~eil-~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv 739 (891)
.++..++++++.++|++.. ...+. .+...+++.|++.+ ...++.+.|.+.|+..... +...+ +++
T Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~l~~~Gv~v~~~----~~~~lRi~~ 359 (379)
T TIGR00707 292 LENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEA--------PCKDIVKKALEKGLLVNCA----GPKVLRFLP 359 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEEEEecC--------cHHHHHHHHHHCCcEEeeC----CCCEEEEEC
Confidence 4556667777777776531 11111 11234566777642 2467888899999874321 23456 998
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei 758 (891)
+...|+++++++++.|+++
T Consensus 360 ~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 360 PLIITKEEIDEAVSALEEA 378 (379)
T ss_pred CCcCCHHHHHHHHHHHHHh
Confidence 8888999999999999864
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0046 Score=70.53 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=67.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I~ 218 (891)
.|++.+-+.+....++...|.+++.++.+.+ ..+|++++++.+.+. +-+|..+..+|.||.+-+. ++|+
T Consensus 119 ~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~ 192 (385)
T PRK09276 119 VVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKK------AKLMFINYPNNPTGAVADLEFFEEVV 192 (385)
T ss_pred EEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 3666666666666666777889999998643 458999998877543 3366666679999999884 7888
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++++++.+|-+|+.+
T Consensus 193 ~~~~~~~~~ii~De~y~~~ 211 (385)
T PRK09276 193 DFAKKYDIIVCHDAAYSEI 211 (385)
T ss_pred HHHHHCCcEEEEecchhhe
Confidence 8899999999999999643
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.049 Score=62.34 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 710 NRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+.+.|.++|++.. +. +...+ |++....++++|+++++.|++.+
T Consensus 340 ~~~~~~~l~~~GV~~~-p~---~~~~lR~~p~~~~~~~~i~~~l~~l~~~l 386 (389)
T PRK01278 340 NRDLVQALRDEGLLTV-GA---GDNVVRLLPPLIITEEEIDEALERLERAA 386 (389)
T ss_pred HHHHHHHHHHCCeEEe-ec---CCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 4678888888898743 22 23456 88877789999999999998765
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.02 Score=65.50 Aligned_cols=246 Identities=12% Similarity=0.061 Sum_probs=137.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~m 541 (891)
+|+ +|+|+++++..++.+. . .+...|++..-.|.....++...|.+++.+|.++ ++.+
T Consensus 89 ~i~--~t~G~~~al~~~~~~~----~---------------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 147 (387)
T PRK08912 89 EVM--VTSGATEALAAALLAL----V---------------EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRL 147 (387)
T ss_pred cEE--EeCCcHHHHHHHHHHh----c---------------CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcC
Confidence 566 6789898876555432 1 0122477777888888888888899999999864 6789
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC-----------CCCc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG-----------IEYA 582 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG-----------i~~a 582 (891)
|+++|++++.... ..++++ +-.|++. |.++ .++ ...-
T Consensus 148 ~~~~l~~~~~~~~----~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 223 (387)
T PRK08912 148 PRAALAAAFSPRT----KAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRER 223 (387)
T ss_pred CHHHHHHHhCccc----eEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCc
Confidence 9999999886421 122222 2345543 2221 111 1112
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--Hhh
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSG 658 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G 658 (891)
+-+..+.+|.++.| .-+|+++...+ .+ +.+. ....+ .++. +. ..+++....+. .+-
T Consensus 224 ~i~~~S~SK~~g~~GlRiG~~~~~~~-~~-~~l~~~~~~~------------~~~~--~~----~~q~~~~~~l~~~~~~ 283 (387)
T PRK08912 224 TVKIGSAGKIFSLTGWKVGFVCAAPP-LL-RVLAKAHQFL------------TFTT--PP----NLQAAVAYGLGKPDDY 283 (387)
T ss_pred eEEEeechhhccCcCceeEEEecCHH-HH-HHHHHHHhhc------------cccC--Ch----HHHHHHHHHHhCCHHH
Confidence 34567788977744 33787776432 22 2111 10000 0110 10 11222222222 122
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc----cCC
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ----EQN 733 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~----~g~ 733 (891)
+++..++..+.++++.+.|++. ++++..+.....+++++++.+ .+....++.+.|. +.|+.+..+... .+.
T Consensus 284 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g~~~l~~~l~~~~---~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~ 359 (387)
T PRK08912 284 FEGMRADLARSRDRLAAGLRRI-GFPVLPSQGTYFLTVDLAPLG---LAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVT 359 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEecccccC---CCCCHHHHHHHHHhcCCEEEecchhhCCCCCCC
Confidence 3445556677788888889886 576654333335666765311 0123456777765 578875554432 123
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.++ +++.. .++.++..++.|++.+
T Consensus 360 ~~iRl~~~~--~~~~l~~~l~rl~~~l 384 (387)
T PRK08912 360 SVVRFCFAK--RDATLDEAVERLAAAR 384 (387)
T ss_pred CEEEEEEeC--CHHHHHHHHHHHHHHH
Confidence 466 88775 4788888887776543
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.017 Score=66.47 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=70.4
Q ss_pred ccchhHHHHHHHHHHHHhccccCCcccccccc-CCeEEEecCCCChHHHHHHHHcCC------------eEEEEecCCCC
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLL-SKLMAYCSKEAHSCVEKAAMMAFV------------RLKILEPDDKN 175 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~-~~~~v~~S~~~H~Sv~kaa~~~~~------------~v~~V~~d~~g 175 (891)
+.+|+. .+...+.+||...... .|... .+-+|.+...-|-+..-++.+.+. .+..++.+
T Consensus 103 ~~SGse-A~e~Alk~a~~~~~~~----~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 174 (396)
T PRK04073 103 MNTGAE-AVETAIKAARRWAYDV----KGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG--- 174 (396)
T ss_pred cCChHH-HHHHHHHHHHHHhhhc----cCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC---
Confidence 456765 4556667777641100 01101 122344445567666555443221 12333322
Q ss_pred cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 176 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 176 ~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+.+. +.+|++.-..+.+|.+-| +++|.++|+++|+++.+|-++.|+
T Consensus 175 --d~~~l~~~i~~~------~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~ 232 (396)
T PRK04073 175 --DLEALKAAITPN------TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGL 232 (396)
T ss_pred --CHHHHHHhcccC------eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCC
Confidence 788898887543 468888888889999866 899999999999999999999663
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0038 Score=72.17 Aligned_cols=87 Identities=11% Similarity=0.181 Sum_probs=66.1
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-+.+.....+...+.+++.++.+ ++..+|+++|++.+++. +..++.+..+|.||.+-+ +.+|++
T Consensus 124 v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~nP~NPTG~~~s~~~~~~l~~ 197 (409)
T PLN00143 124 ILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADEN------TIAMVIINPGNPCGSVYSYEHLNKIAE 197 (409)
T ss_pred EEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccC------CEEEEEECCCCCCCCccCHHHHHHHHH
Confidence 5565556666666667778899999875 34579999999877543 235555567999999977 677888
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|++++++|.+|-+|..+
T Consensus 198 ~a~~~~~~ii~De~Y~~l 215 (409)
T PLN00143 198 TARKLGILVIADEVYGHI 215 (409)
T ss_pred HHHHcCCeEEEEcccccc
Confidence 899999999999999543
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.014 Score=67.75 Aligned_cols=241 Identities=12% Similarity=0.014 Sum_probs=134.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ ++.|+++++..++.+.-+ +.-.|++..-........+...|.+++.||.|++| +|
T Consensus 143 ~Ii--it~G~~~al~~~~~~l~~-------------------pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~ 200 (431)
T PRK15481 143 EID--LTSGAIDAIERLLCAHLL-------------------PGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQ 200 (431)
T ss_pred eEE--EecCcHHHHHHHHHHhCC-------------------CCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CC
Confidence 566 678888988777664311 12246666667778888888899999999998776 99
Q ss_pred HHHHHHHHHhhhhcCCccEEEE----ecCCccc-----------hhhhhcCC-----CCccE-----------------E
Q psy852 543 GATLRQVMQQDETMGYIPFFVS----TTLGTTS-----------CYRKSQGI-----EYADS-----------------F 585 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~-----------c~~~ldGi-----~~aDS-----------------I 585 (891)
+++|+++++.. ...++++ +-.|++. |.++-+-. -+.|. +
T Consensus 201 ~~~l~~~~~~~----~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~ 276 (431)
T PRK15481 201 PEKLERALAQG----ARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWAL 276 (431)
T ss_pred HHHHHHHHhcC----CCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEE
Confidence 99999998652 1223443 3456665 22210100 00111 1
Q ss_pred EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh----HH
Q psy852 586 NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG----LQ 660 (891)
Q Consensus 586 s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G----~~ 660 (891)
.-++.|.++ | .-+|+++.. +. +.+.+.... . ...-....+.++++...+.... ++
T Consensus 277 ~~SfSK~~~-~GlRiG~~i~~-~~-~~~~~~~~~--------------~---~~~~~~s~~~q~a~~~~l~~~~~~~~l~ 336 (431)
T PRK15481 277 IRSVSKALG-PDLRLAFVASD-SA-TSARLRLRL--------------N---SGTQWVSHLLQDLVYACLTDPEYQARLA 336 (431)
T ss_pred EeeeccccC-CCceeEEEeCC-HH-HHHHHHHHH--------------h---ccccCCCHHHHHHHHHHHhCccHHHHHH
Confidence 122333333 2 113322221 11 111010000 0 0000012345556656554333 34
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc---CCeEE-
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE---QNDEV- 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~---g~~~l- 736 (891)
+..+...+..+++.+.|++. ++++..+...+-++++++. ....+.+.|.+.|+.+..++... ....+
T Consensus 337 ~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~--------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iR 407 (431)
T PRK15481 337 QARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDT--------DSQATALTLAKSGWLVREGEAFGVSAPSHGLR 407 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCC--------CHHHHHHHHHHCCcEEecCCccccCCCCCeEE
Confidence 45556677777888888875 5655445555666777642 23567788888998866554331 12456
Q ss_pred EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++.. ++++++.+++.|.+++
T Consensus 408 is~~~~-~~~~i~~~~~~l~~~~ 429 (431)
T PRK15481 408 ITLSTL-NDAEINRLAADLHQAL 429 (431)
T ss_pred EEcCCC-ChHHHHHHHHHHHHHh
Confidence 888764 5899999999998765
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0056 Score=70.22 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=70.5
Q ss_pred CccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 581 YADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
++|-+..+.|||++++-+ .|+++.+ ++.+... .. ..++ + +-...+...|..++ |.+-
T Consensus 186 gaDivv~S~tK~l~G~~d~~gG~v~~~-~~~~~~l-~~-~~~~------------~----G~~l~p~~a~~~~r--gl~t 244 (377)
T TIGR01324 186 GVDISIQAGTKYLVGHSDIMIGTVVAN-ARTWDQL-RE-HSYL------------M----GQMVDADDAYTTLR--GLRT 244 (377)
T ss_pred CceEEEecCceeccCCCCceEEEEEeC-HHHHHHH-HH-HHHH------------h----CCCCCHHHHHHHHh--hhhh
Confidence 589999999999999865 4655544 3322211 10 0010 0 11122345566665 5566
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcE-EeCC-----C-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHhC
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFE-ISND-----V-----------RLGLVCFRLRSENNLIADQNNRKLLEDINAS 720 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~e-il~~-----~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~ 720 (891)
+.-++++..++|..+++.|++.|.++ +.-| | ..++++|++++.+ .....++.+.|+.-
T Consensus 245 l~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~----~~~~~~~~~~l~~~ 319 (377)
T TIGR01324 245 LGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT----QKQVHAFLDHLQLF 319 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC----HHHHHHHHHhCCcc
Confidence 77779999999999999999988774 3221 1 1479999997532 12334666666553
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.03 Score=63.97 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 662 YIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
..++..++.+++.+.|++. +.+..+ +.....+.+++. . ...++..+|.++|+++..+ +...+
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~-~-------~~~~~~~~l~~~Gv~v~~~----~~~~lR 369 (396)
T PRK02627 303 LLENAAEVGEYLRAKLRELLEKYPGIKEV-RGLGLMIGIELD-R-------PAAEIVKKALEKGLLINVT----GDNVLR 369 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeee-ccCcEEEEEEec-C-------cHHHHHHHHHHCCeEEeec----CCCEEE
Confidence 4455555666666665543 222211 122345667662 1 3467888888889874332 23456
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++++...++++|+++++.|++.+.
T Consensus 370 i~~~~~~~~~~i~~~~~~l~~~l~ 393 (396)
T PRK02627 370 LLPPLIISKEEIDEAVDRLEEVLK 393 (396)
T ss_pred EECCcccCHHHHHHHHHHHHHHHH
Confidence 888777899999999999988763
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0039 Score=71.58 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=66.6
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|+++.-++......+...|.+++.++++. ++.+|++.|++.+.+.. -+|+++..+|.||.+- .+++|++
T Consensus 122 v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~~~~p~NPtG~~~~~~~~~~l~~ 195 (401)
T TIGR01264 122 ILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKT------AALIVNNPSNPCGSVFSRQHLEEILA 195 (401)
T ss_pred EEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCc------eEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence 55555555555556667778898888754 57899999998776432 3556677799999995 4888999
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|++|++|.+|+.+.
T Consensus 196 ~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 196 VAERQCLPIIADEIYGDMV 214 (401)
T ss_pred HHHHCCCEEEEEhhhhhhc
Confidence 9999999999999996543
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.01 Score=67.97 Aligned_cols=184 Identities=11% Similarity=0.189 Sum_probs=105.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH----HHHHHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC----VEKAAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S----v~Kaa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|++++..++.+. .+. | -.|+++...|.+ ..+.+...|++++.++.+ |+
T Consensus 74 ~~~sG~~Ai~~al~al----~~~----------G-----d~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~-----d~ 129 (380)
T TIGR01325 74 ATATGMSAIQAALMTL----LQA----------G-----DHVVASRSLFGSTVGFISEILPRFGIEVSFVDPT-----DL 129 (380)
T ss_pred EECCHHHHHHHHHHHH----hCC----------C-----CEEEEecCCcchHHHHHHHHHHHhCCEEEEECCC-----CH
Confidence 4678888888777553 111 1 125555555543 233444567888888764 68
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~P 596 (891)
++|++++++.+ ..+++. +..|+.. |+++ +|. + -++|.+..++|||++++
T Consensus 130 ~~l~~~i~~~t----klV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~ 205 (380)
T TIGR01325 130 NAWEAAVKPNT----KLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQ 205 (380)
T ss_pred HHHHHhcCCCc----eEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCC
Confidence 88888776532 112211 2234332 3331 221 1 24899999999999987
Q ss_pred cc-cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy852 597 FD-SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEG 675 (891)
Q Consensus 597 ~g-~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~ 675 (891)
-. .|.+++.+++.+.. +. .++.. .+..+.....|..++ |.+-+..++++..++++++.+
T Consensus 206 g~~~gG~vv~~~~~~~~-l~---~~~~~--------------~g~~~~p~~a~~~l~--~l~tl~~r~~~~~~~a~~la~ 265 (380)
T TIGR01325 206 GRVMGGVIAGSEELMAE-VA---VYLRH--------------TGPAMSPFNAWVLLK--GLETLSLRMQKQFDSALAIAE 265 (380)
T ss_pred CCeEEEEEEeCHHHHHH-HH---HHHHh--------------hCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHH
Confidence 43 43444444433221 11 01100 011122334455554 677777889999999999999
Q ss_pred HhccCCCcEEeC------CC-----------ceeEEEEEec
Q psy852 676 KVRRDPRFEISN------DV-----------RLGLVCFRLR 699 (891)
Q Consensus 676 ~L~~~~~~eil~------~~-----------~~~iV~Fr~~ 699 (891)
.|+++|.++-+. .| -.++++|.++
T Consensus 266 ~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 266 WLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 999988776432 11 1369999996
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0053 Score=70.97 Aligned_cols=301 Identities=9% Similarity=0.036 Sum_probs=149.5
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCcccccccc
Q psy852 424 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVL 503 (891)
Q Consensus 424 l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~ 503 (891)
-+.|.+|.. |.+.|..-- ...++-+.+++.+.. +-.- ++..|+.++.+++...-. +... +-|..
T Consensus 57 ~~m~aAM~~-GDD~Y~gdp-Sv~~Lee~vael~G~----E~al-pthqGRgaE~Il~~~~~~----~~g~-----e~g~~ 120 (467)
T TIGR02617 57 QSMQAAMMR-GDEAYSGSR-SYYALAESVKNIFGY----QYTI-PTHQGRGAEQIYIPVLIK----KREQ-----EKGLD 120 (467)
T ss_pred HHHHHHHHc-CCcccccCc-hHHHHHHHHHHHhCC----ceEE-ECCCCchHHHHHHHhhcc----cccc-----ccccc
Confidence 456777765 665553321 112344444555433 3332 344557777777544211 0000 00000
Q ss_pred ccceEEEecccchHHHHHH-HHHcCceEEEecC----------CCCCCcCHHHHHHHHHhhhhcC--Cc-cEEEEecCCc
Q psy852 504 LSKLMAYCSKEAHSCVEKA-AMMAFVRLKILEP----------DDKNSLRGATLRQVMQQDETMG--YI-PFFVSTTLGT 569 (891)
Q Consensus 504 ~~~~vI~~S~~aH~Sv~Ka-a~l~gv~v~~Vp~----------d~~G~mD~~~Le~aI~~d~~~g--~i-p~~VvataGT 569 (891)
..++ +++...|+--.++ +.+.|+..+.+++ +.+|.||+++|+++|++....+ .+ +-++++++|.
T Consensus 121 ~~~~--~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GG 198 (467)
T TIGR02617 121 RSKM--VAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGG 198 (467)
T ss_pred cccc--ccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCC
Confidence 0011 4455555554443 4577877776543 2469999999999998642111 11 2233455555
Q ss_pred cc------------hhh-----hhcC-----------------------------CCCccEEEEcCcccCCcccccEEEE
Q psy852 570 TS------------CYR-----KSQG-----------------------------IEYADSFNVNVNKWLLTAFDSSCLW 603 (891)
Q Consensus 570 T~------------c~~-----~ldG-----------------------------i~~aDSIs~d~HK~L~~P~g~G~ll 603 (891)
.. |++ |+|| .+++||+++|+.|.+++|+|. ++.
T Consensus 199 qpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvGg-~La 277 (467)
T TIGR02617 199 QPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMGG-LLC 277 (467)
T ss_pred EEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcccc-eEE
Confidence 43 332 2332 177899999999999999963 444
Q ss_pred EeCC---ccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC
Q psy852 604 VADR---YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD 680 (891)
Q Consensus 604 vR~~---~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~ 680 (891)
.+++ +.+.+.-.....| |+-+ .++=-.+|-..++++ -+-..--...+++.....+||.++|++.
T Consensus 278 g~d~~~~~l~~~~~~~~i~~-----EGf~---tYGGlagrd~ea~a~-----Gl~e~~~~~yl~~ri~qv~yl~~~L~~~ 344 (467)
T TIGR02617 278 FKDDSFFDVYTECRTLCVVQ-----EGFP---TYGGLEGGAMERLAV-----GLYDGMNLDWLAYRINQVQYLVNGLEEI 344 (467)
T ss_pred ecchhHHHHHHHHHhhcccc-----cCCc---CcCchhHHHHHHHHh-----hhhhcccHHHHHHHHHHHHHHHHHHHhC
Confidence 4454 2222211111111 1111 222222444444431 0111112456667788889999999873
Q ss_pred CCcEEeCCCceeEEEEE---ecCC-cchhhhhhHHHHHHHH-HhCCcEEEe-ecc-----ccC-------CeEE-EEecC
Q psy852 681 PRFEISNDVRLGLVCFR---LRSE-NNLIADQNNRKLLEDI-NASGRLHMV-PAS-----QEQ-------NDEV-FELQE 741 (891)
Q Consensus 681 ~~~eil~~~~~~iV~Fr---~~~~-~~~~~d~ln~~L~~~L-~~~G~~~~s-~s~-----~~g-------~~~l-~sv~~ 741 (891)
++-++. +.-.-|-.. +.|- ..+ .--.+.|...| .+.|+--+. ++- ... -..+ +.+..
T Consensus 345 -Gvpi~~-~Gghav~iDa~~~lphip~~--~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipR 420 (467)
T TIGR02617 345 -GVVCQQ-AGGHAAFVDAGKLLPHIPAD--QFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPR 420 (467)
T ss_pred -CCcEEe-cCccEEEEehhhhCCCCChh--hCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeecccc
Confidence 565554 333333221 1111 011 12345666665 456653111 111 111 1334 55544
Q ss_pred C-CCHHHHHHHHHHHHHHHH
Q psy852 742 R-KRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 742 ~-tT~edId~li~~L~ei~~ 760 (891)
. -|.+++|..++++..+.+
T Consensus 421 rvyt~~h~d~v~~~~~~~~~ 440 (467)
T TIGR02617 421 ATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_pred ccccHhHHHHHHHHHHHHHh
Confidence 3 389999999999998763
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.034 Score=63.60 Aligned_cols=244 Identities=12% Similarity=0.100 Sum_probs=130.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CCC-C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKN-S 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~G-~ 540 (891)
+|+ +|+|+++++..++.+. .+ +.-.|+++.-.+......+...|++++.+|.+ ++| .
T Consensus 90 ~i~--~t~G~~~al~~~~~~l----~~---------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~ 148 (397)
T PRK07568 90 EIL--ITNGGSEAILFAMMAI----CD---------------PGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFH 148 (397)
T ss_pred eEE--EcCChHHHHHHHHHHh----cC---------------CCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCC
Confidence 455 7889999888766542 11 11135555544444555567788999999986 344 2
Q ss_pred -cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----h---------cC--------CCC-c
Q psy852 541 -LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----S---------QG--------IEY-A 582 (891)
Q Consensus 541 -mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----l---------dG--------i~~-a 582 (891)
.|+++|++++++..+ .++++ +..|++. |.++ + ++ +.. .
T Consensus 149 ~~~~~~l~~~~~~~~~----~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~ 224 (397)
T PRK07568 149 LPSKEEIEKLITPKTK----AILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLE 224 (397)
T ss_pred CCCHHHHHHhcCccce----EEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCc
Confidence 357899988865321 12222 2345543 2221 1 11 000 1
Q ss_pred c-EE-EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHh
Q psy852 583 D-SF-NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLS 657 (891)
Q Consensus 583 D-SI-s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~ 657 (891)
+ .| .-+.+|.++.| .-+|+++..+++.+......... .+ ....+.+.++...+ +..
T Consensus 225 ~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-------------~~------~~s~~~q~~~~~~l~~~~~ 285 (397)
T PRK07568 225 DRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQA-------------RL------SPPTLEQIGAAALLDTPES 285 (397)
T ss_pred CCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhc-------------cC------CCCcHHHHHHHHHhhCCHH
Confidence 1 23 33678877653 55788777554333221111000 00 01122333333333 233
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh------CCcEEEeeccc-
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA------SGRLHMVPASQ- 730 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~------~G~~~~s~s~~- 730 (891)
-+++..+...+.++.+.+.|++.+++.+..+.....++++++.. ...++.+.|.+ .|+.+..+...
T Consensus 286 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~ 358 (397)
T PRK07568 286 YFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFY 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhc
Confidence 45555666777888899999888777654333333456676432 23455566543 47765544322
Q ss_pred ----cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 ----EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ----~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+...+ +++. .+.++++++++.|.+.+
T Consensus 359 ~~~~~~~~~iRls~~--~~~~~~~~~~~~l~~~l 390 (397)
T PRK07568 359 ATPGLGKNEIRIAYV--LNEEDLKRAMEILKEAL 390 (397)
T ss_pred CCCCCCCCeEEEEEe--CCHHHHHHHHHHHHHHH
Confidence 123456 8875 35799999998888765
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.031 Score=66.50 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=70.9
Q ss_pred EEEecCCCChHHHHHHH-HcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHH
Q psy852 144 MAYCSKEAHSCVEKAAM-MAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I 217 (891)
.|++..-.+......+. ..|.+++.|+++ +++.+|+++|+++++...+.+..+-+|+++--+|.||.+-+. ++|
T Consensus 145 ~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L 224 (496)
T PLN02376 145 VFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNL 224 (496)
T ss_pred EEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHH
Confidence 36666666666766665 468899999986 457899999998876544334445566677889999999775 557
Q ss_pred HHHHHHcCCceeeeccccCC
Q psy852 218 GPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~ 237 (891)
+++|++++++|.+|-+|+.+
T Consensus 225 ~~~a~~~~i~lI~DEiY~~~ 244 (496)
T PLN02376 225 VRFVTRKNIHLVVDEIYAAT 244 (496)
T ss_pred HHHHHHcCCEEEEEcCcccc
Confidence 77889999999999999543
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0015 Score=74.67 Aligned_cols=268 Identities=13% Similarity=0.090 Sum_probs=169.2
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH----HHH
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----KAA 523 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~----Kaa 523 (891)
+.+.+++.+...+. +++ ++.|+++++...+.+..... .+...|+++..+|+|.. ..+
T Consensus 65 l~~~ia~~~~~~~~-~v~--~~~~~t~~l~~~~~~~~~~~----------------~~gd~vl~~~~~~~s~~~~~~~~~ 125 (397)
T TIGR01976 65 AREAVADLLNADPP-EVV--FGANATSLTFLLSRAISRRW----------------GPGDEVIVTRLDHEANISPWLQAA 125 (397)
T ss_pred HHHHHHHHcCCCCC-eEE--EeCCHHHHHHHHHHHHHhcC----------------CCCCEEEEcCCchHhHHHHHHHHH
Confidence 33455556655444 455 56788887665443332110 12235888888998765 344
Q ss_pred HHcCceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------hhhh-----hcCC-------
Q psy852 524 MMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYRK-----SQGI------- 579 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~~-----ldGi------- 579 (891)
...|++++.+|.++ ++.+|+++|+++|++.+ ..+++ .+..|... |+++ +|++
T Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~----~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~ 201 (397)
T TIGR01976 126 ERAGAKVKWARVDEATGELHPDDLASLLSPRT----RLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGL 201 (397)
T ss_pred HhcCCEEEEEeccccCCCcCHHHHHHhcCCCc----eEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccC
Confidence 56789999999876 79999999999997532 12222 23455543 4331 2221
Q ss_pred -----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc-ccccccc-chHHHHHHH
Q psy852 580 -----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI-PLSRRFR-SLKLWFVIR 652 (891)
Q Consensus 580 -----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti-~~SRr~~-aL~lW~~L~ 652 (891)
..+|.+++++|||++ |. +|+++++++ .+.........|..... ...+ .+++.+. .+.++.+++
T Consensus 202 ~~~~~~~~d~~~~s~~K~~g-~~-~G~l~~~~~-~~~~l~~~~~~~~~~~~-------~~~~~~gt~~~~~~~~l~~al~ 271 (397)
T TIGR01976 202 IDVQATGADFLTCSAYKFFG-PH-MGILWGRPE-LLMNLPPYKLTFSYDTG-------PERFELGTPQYELLAGVVAAVD 271 (397)
T ss_pred CCHHHcCCCEEEEechhhcC-Cc-eEEEEEcHH-HHhhCCCccccCccCCC-------cchhcCCCCCHHHHHHHHHHHH
Confidence 247999999999986 43 788888755 22111111111111100 0011 1233322 345667777
Q ss_pred HHHHhh--------------HHHHHHHHHHHHHHHHHHhccCCCcEEeCC----CceeEEEEEecCCcchhhhhhHHHHH
Q psy852 653 TYGLSG--------------LQKYIRRHCELAKLFEGKVRRDPRFEISND----VRLGLVCFRLRSENNLIADQNNRKLL 714 (891)
Q Consensus 653 ~lG~~G--------------~~~~i~~~~~lA~~L~~~L~~~~~~eil~~----~~~~iV~Fr~~~~~~~~~d~ln~~L~ 714 (891)
.+...| +++..++..++++++.+.|+++++++++.+ ...+++.|.+.+. ....+.
T Consensus 272 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~ 344 (397)
T TIGR01976 272 YLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGL-------PPQRVV 344 (397)
T ss_pred HHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCc-------CHHHHH
Confidence 664443 677788889999999999999888998764 2578999988533 346788
Q ss_pred HHHHhCCcEEEeeccc-----------cCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 715 EDINASGRLHMVPASQ-----------EQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 715 ~~L~~~G~~~~s~s~~-----------~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
++|.+.|+.+..++.+ .....+ +|++.++|++|||+++++|
T Consensus 345 ~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 345 RRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 9999999886654322 133467 9999999999999999764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0048 Score=73.89 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=69.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|++..-.......++...+.+++.++.|++ +.+|+++|++.+++...++..+-+++++--+|.||.+- .+++|++
T Consensus 219 Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~ 298 (534)
T PLN02231 219 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVE 298 (534)
T ss_pred EEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 555555555556666667778999998864 58999999999987554444455555556688999995 5567888
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|++++++|..|-+|+-
T Consensus 299 ~a~~~~l~lI~DEvY~~ 315 (534)
T PLN02231 299 FCKQEGLVLLADEVYQE 315 (534)
T ss_pred HHHHcCCEEEEEccchh
Confidence 99999999999999943
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.026 Score=64.28 Aligned_cols=142 Identities=8% Similarity=0.037 Sum_probs=75.7
Q ss_pred cCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHH-HH
Q psy852 588 NVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIR-RH 666 (891)
Q Consensus 588 d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~-~~ 666 (891)
+..|.++.-+..|+++.+++ +.+.+... .+ ..+.. +-+........+|+.+..+++.+.++ ..
T Consensus 231 t~sK~l~~G~~ig~~~~~~~--~~~~~~~~-~~------------~~t~~-~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 294 (375)
T PRK04260 231 TLAKGLANGVPVGAMLAKSS--LGGAFGYG-SH------------GSTFG-GNKLSMAAASATLDIMLTAGFLEQALENG 294 (375)
T ss_pred EecccccCCcceEEEEEcHH--HHhhcCCC-CC------------CCCCC-cCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56898774456789988754 22222100 00 01111 11223334445555544444433322 22
Q ss_pred HHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCH
Q psy852 667 CELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRK 745 (891)
Q Consensus 667 ~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~ 745 (891)
..+.+.+.+.+...+.+.-+.. ....+.+.+. . ...++.++|.+.|+.+. +. +...+ ++++..+++
T Consensus 295 ~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~-~-------~~~~~~~~l~~~Gi~v~-~~---~~~~lR~~~~~~~t~ 361 (375)
T PRK04260 295 NYLQEQLQKALQDKETVTTVRG-LGYMIGIETT-A-------DLSQLVEAARDKGLIVL-TA---GTNVIRLLPPLTLTK 361 (375)
T ss_pred HHHHHHHHHHHhhCCCeeEEec-cceEEEEEec-C-------cHHHHHHHHHhCCCEEe-cC---CCCEEEEcCCCccCH
Confidence 3333444444444433222211 3345566652 1 34678889999998743 22 33556 999888899
Q ss_pred HHHHHHHHHHHHH
Q psy852 746 DDLAYKRSFFVRM 758 (891)
Q Consensus 746 edId~li~~L~ei 758 (891)
+||+++++.|+++
T Consensus 362 ~~i~~~l~~l~~~ 374 (375)
T PRK04260 362 EEIEQGIAILSEV 374 (375)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999764
|
|
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0033 Score=69.69 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=120.4
Q ss_pred ecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccC
Q psy852 170 EPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFM 248 (891)
Q Consensus 170 ~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~ 248 (891)
.+| ..|-||.|.||+....- +|-+++ +|++...-.-|...+.+||++.|..+.+|=|+
T Consensus 168 kv~~~TG~IDYD~Le~~A~~f-----rPk~ii--aG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAH-------------- 226 (477)
T KOG2467|consen 168 KVDPSTGYIDYDKLEKTATLF-----RPKLII--AGTSAYSRLIDYARFRKIADKVGAYLMADMAH-------------- 226 (477)
T ss_pred eeCCCCCceehHHHHHHHHhc-----CCcEEE--eccccchhhccHHHHHHHHHhcCceeehhhhh--------------
Confidence 356 57999999999865543 365554 57788888889999999999998777777666
Q ss_pred CCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccc
Q psy852 249 NGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRD 328 (891)
Q Consensus 249 ~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (891)
+|+-
T Consensus 227 ----------ISgL------------------------------------------------------------------ 230 (477)
T KOG2467|consen 227 ----------ISGL------------------------------------------------------------------ 230 (477)
T ss_pred ----------HHHH------------------------------------------------------------------
Confidence 1110
Q ss_pred cccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcc
Q psy852 329 AIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 408 (891)
Q Consensus 329 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~ 408 (891)
-|.+.+.+ -.++||-+|..-||.+-+|-+ |++++|.+-+-.. ...+.-+....|..+
T Consensus 231 ------------VAA~vips--------PFey~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~~--~k~g~~i~ydlE~kI 287 (477)
T KOG2467|consen 231 ------------VAAGVIPS--------PFEYCDIVTTTTHKSLRGPRG-AMIFYRKGVKSIK--PKQGKEILYDLEDKI 287 (477)
T ss_pred ------------HhcccCCC--------cccccceeeccccccccCCcc-eeEEEeccCCcCC--CCCCCcceechhhhh
Confidence 01111111 135799999999999999997 7888887633221 111111122233455
Q ss_pred cccc-cccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q psy852 409 DYRH-WGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 409 ~~~~-~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv 465 (891)
|+.. .+++|.-+.. ..++-.+||.-..-.|.+..++.+.+|+.+++.|.+ .+++++
T Consensus 288 NfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~-~Gy~lv 345 (477)
T KOG2467|consen 288 NFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALIS-RGYKLV 345 (477)
T ss_pred hhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH-cCceEe
Confidence 5433 3677776654 446678899999999999999999999999999976 466766
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0058 Score=70.46 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=66.6
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I~~i~ 221 (891)
|++..-++......+...|.+++.|+++.++. +++++++.+..... .+.+|+.+..+|.||.+-+. ++|+++|
T Consensus 119 Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~~---~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a 194 (405)
T PRK09148 119 ILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVRHSIP---KPIALIVNYPSNPTAYVADLDFYKDVVAFA 194 (405)
T ss_pred EEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhccc---cceEEEEeCCCCCCCcCCCHHHHHHHHHHH
Confidence 66666677666666666788999999976653 35666666653321 24678888889999999887 5788889
Q ss_pred HHcCCceeeeccccCC
Q psy852 222 KEFDVWLHVDGAYAGS 237 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~ 237 (891)
++++++|.+|-+|+.+
T Consensus 195 ~~~~~~ii~De~Y~~~ 210 (405)
T PRK09148 195 KKHDIIILSDLAYSEI 210 (405)
T ss_pred HHcCeEEEEeccchhh
Confidence 9999999999999643
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.023 Score=65.59 Aligned_cols=177 Identities=12% Similarity=0.122 Sum_probs=103.3
Q ss_pred EEEecccchHHHHHH----HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Ka----a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c 572 (891)
.|+++...|.+.... +...|++++.++. .|+++|+++|++.++ .+++ .+..|... |
T Consensus 105 ~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~~~tk----lV~ie~p~NPtg~v~dl~~I~~la 175 (398)
T PRK08249 105 RVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIAKGCD----LLYLETPTNPTLKIVDIERLAAAA 175 (398)
T ss_pred EEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcCCCCe----EEEEECCCCCCCccCCHHHHHHHH
Confidence 477777788765433 3345777766653 588888888865321 2222 22234433 3
Q ss_pred hhh-----hcC-----------CCCccEEEEcCcccCCcccc-cEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 573 YRK-----SQG-----------IEYADSFNVNVNKWLLTAFD-SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 573 ~~~-----ldG-----------i~~aDSIs~d~HK~L~~P~g-~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
+++ +|. ...+|.+..+++|+++++-+ .|.+++.+++......... ..
T Consensus 176 ~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~-~~--------------- 239 (398)
T PRK08249 176 KKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYR-EI--------------- 239 (398)
T ss_pred HHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHH-Hh---------------
Confidence 321 111 13589999999999997754 3445555543322211100 00
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC------C-----------ceeEEEEEe
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND------V-----------RLGLVCFRL 698 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~------~-----------~~~iV~Fr~ 698 (891)
.+-....+..|..++ |.+.+..++++..++++++.+.|+++|.++-+.- | -.++++|.+
T Consensus 240 --~g~~~s~~~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~ 315 (398)
T PRK08249 240 --NGATMDPMSAYLILR--GMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVL 315 (398)
T ss_pred --cCCCCCHHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEE
Confidence 011223455666655 6677788899999999999999999888764321 1 136999999
Q ss_pred cCCcchhhhhhHHHHHHHHH
Q psy852 699 RSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 699 ~~~~~~~~d~ln~~L~~~L~ 718 (891)
++. .....++++.|.
T Consensus 316 ~~~-----~~~~~~f~~~l~ 330 (398)
T PRK08249 316 KGG-----MDTVKRLLPKLR 330 (398)
T ss_pred cCC-----HHHHHHHHHhCC
Confidence 642 223345555554
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.028 Score=64.52 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 177 id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
.|+++|++.+.+. +.+|++....+.+|.+-| +++|+++|+++|+++.+|.++.|+
T Consensus 175 ~d~~~le~~i~~~------~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~ 233 (401)
T PRK00854 175 GDAEALEAAITPN------TVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGL 233 (401)
T ss_pred CCHHHHHHHhCCC------eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 3789999988642 357778888889999987 999999999999999999999663
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.053 Score=61.91 Aligned_cols=245 Identities=9% Similarity=0.005 Sum_probs=135.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +|+|+++++..++.+... +.-.|++..-.+......+...|++++.+|.++ .+.
T Consensus 92 ~i~--~t~G~~~al~~~~~~l~~-------------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 150 (386)
T PRK07550 92 QVH--ITSGCNQAFWAAMVTLAG-------------------AGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLL 150 (386)
T ss_pred eEE--EecCcHHHHHHHHHHhcC-------------------CCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCC
Confidence 556 678888887776655311 112366666666666666678899999999974 456
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC---------------CC----c
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI---------------EY----A 582 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi---------------~~----a 582 (891)
+|+++|++++++.. ..++++ +-.|.+. |.++ .|.+ .. .
T Consensus 151 ~~~~~l~~~~~~~~----~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~ 226 (386)
T PRK07550 151 PDPAAAEALITPRT----RAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDD 226 (386)
T ss_pred CCHHHHHHHhcccC----cEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccc
Confidence 89999999997532 122333 3345443 3221 1110 00 0
Q ss_pred cE-EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH--hh
Q psy852 583 DS-FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL--SG 658 (891)
Q Consensus 583 DS-Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~--~G 658 (891)
.. ...+.+|.++.| ..+|+++..++ .+..... +... .+.. ...+.++++...+.. +-
T Consensus 227 ~~i~~~S~SK~~g~~G~RiG~i~~~~~-~~~~~~~----~~~~----------~~~~----~s~~~q~~~~~~l~~~~~~ 287 (386)
T PRK07550 227 TLVHLYSFSKSYALTGHRVGAVVASPA-RIAEIEK----FMDT----------VAIC----APRIGQIAVAWGLPNLADW 287 (386)
T ss_pred cEEEEecchhhccCcccceEeeecCHH-HHHHHHH----HHhh----------cccC----CCcHHHHHHHHHhccHHHH
Confidence 12 245788988755 45777776432 2221111 1100 0011 112333333333321 22
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCeE
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~~ 735 (891)
.++..+...+.++++.+.|+..+++.+. +.....+++++... +....++.+.|. +.|+.+..+... .+...
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~~~~~~-----~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~ 361 (386)
T PRK07550 288 RAGNRAEIARRRDAFRAVFARLPGWELL-ASGAYFAYVRHPFP-----DRPSREVARRLAKEAGILCLPGTMFGPGQEGY 361 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeC-CCceEEEEecCCCC-----CCCHHHHHHHHHHhcCEEEeCchhhCCCCCCE
Confidence 2334445566777888888877666543 33445666666431 123567888764 578775544332 22345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei 758 (891)
+ +++.. .++++++++++.|.+.
T Consensus 362 iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 362 LRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred EEEEeec-CCHHHHHHHHHHHHhh
Confidence 6 88864 4689999999888764
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.07 Score=61.59 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=83.5
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|-+++ -|.++.-++.|+++.+++.. . + ...+. ..|.. +-+..+.....+|+.+-.+ +
T Consensus 241 PDi~t~--gK~lg~G~p~~av~~~~~i~--~-~--~~~~~-----------~~T~~-g~pl~~aaala~L~~l~~~---~ 298 (395)
T PRK03715 241 PDIMTL--GKGIGGGVPLAALLAKAEVA--V-F--EAGDQ-----------GGTYN-GNPLMTAVGVAVISQLLAP---G 298 (395)
T ss_pred Cceeee--hhhhhCCcceEEEEEccccc--c-c--cCCCc-----------CCCCC-CCHHHHHHHHHHHHHHHhc---c
Confidence 687777 48887767789998877631 1 1 11110 11211 2233344455566666443 4
Q ss_pred HHHHHHHHHHHHHHHhccC---CCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh---CCcEEEeeccccCCeE
Q psy852 662 YIRRHCELAKLFEGKVRRD---PRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA---SGRLHMVPASQEQNDE 735 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~---~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~---~G~~~~s~s~~~g~~~ 735 (891)
.+++..++.++|.++|+++ .++.-+. -...++.+.+... ....+.+.+.+ +|++.. +. ...+
T Consensus 299 l~~~~~~~g~~l~~~L~~l~~~~~i~~vr-G~Glm~~i~l~~~-------~~~~~~~~~~~~~~~Gi~~~-~~---~~~~ 366 (395)
T PRK03715 299 FLEGVRARGEYLKEKLLELSEERGLEGER-GEGLLRALLLGKD-------IGPQIVEKARDMQPDGLLLN-AP---RPNL 366 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcCeEE-cceeEEEEEecCc-------hHHHHHHHHHhccCCCEEEe-ec---CCCE
Confidence 5667777888888888653 1222111 1234566666421 22334444444 487632 21 2346
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ +++...+|++|||.++++|++.+.
T Consensus 367 lR~~p~l~~t~~ei~~~~~~l~~~l~ 392 (395)
T PRK03715 367 LRFMPALNVTTEEIDQMIAMLRSVLD 392 (395)
T ss_pred EEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 7 999999999999999999998763
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0021 Score=72.36 Aligned_cols=88 Identities=9% Similarity=0.005 Sum_probs=67.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH-
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE- 223 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~- 223 (891)
|++..-+.......+...|.+++.|+.++++.+|++++++.+++. +.+|+++..+|.+|.+-|+++|.++|++
T Consensus 101 Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~l~~l~~~~ 174 (352)
T PRK03321 101 VIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITDR------TRLIFVCNPNNPTGTVVTPAELARFLDAV 174 (352)
T ss_pred EEeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhC
Confidence 554433322333344567789999999877999999999988643 2366667789999999999999999987
Q ss_pred -cCCceeeeccccCCc
Q psy852 224 -FDVWLHVDGAYAGSS 238 (891)
Q Consensus 224 -~~~~lHvDaA~GG~~ 238 (891)
+++++.+|.+|+.+.
T Consensus 175 ~~~~~ii~De~y~~~~ 190 (352)
T PRK03321 175 PADVLVVLDEAYVEYV 190 (352)
T ss_pred CCCeEEEEechHHHhc
Confidence 589999999996543
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.058 Score=62.38 Aligned_cols=250 Identities=10% Similarity=0.026 Sum_probs=137.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +|+|+++++..++.+... +.-.|+++.-.+......+...|++++.+|.++ ++.
T Consensus 106 ~i~--it~G~~~al~~~~~~~~~-------------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~ 164 (412)
T PTZ00433 106 NVV--LCSGVSHAILMALTALCD-------------------EGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWE 164 (412)
T ss_pred hEE--EeCChHHHHHHHHHHhcC-------------------CCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCc
Confidence 556 788999998877665311 112466666777778888888899999999853 578
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----h---------cCCC---------Ccc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----S---------QGIE---------YAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----l---------dGi~---------~aD 583 (891)
+|+++|++++.+.. ..+++++ -.|++. |.++ . ++-. ..+
T Consensus 165 ~d~~~l~~~~~~~~----~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T PTZ00433 165 ADLDEIRRLVDDRT----KALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVP 240 (412)
T ss_pred CCHHHHHHHhccCc----eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCc
Confidence 99999998886532 1223322 256543 2221 1 1100 011
Q ss_pred EEE-EcCcccCCcc-cccEEEEEeCCcc----chhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-
Q psy852 584 SFN-VNVNKWLLTA-FDSSCLWVADRYK----LTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG- 655 (891)
Q Consensus 584 SIs-~d~HK~L~~P-~g~G~llvR~~~~----L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG- 655 (891)
.|. -+..|.++.| .-+|+++..++.. +...+. .... .++ ...+.+.+....+-
T Consensus 241 ~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~-------------~~~------~~~~~q~a~~~~l~~ 301 (412)
T PTZ00433 241 RVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGML-------------VCG------PCSVVQAALGEALLN 301 (412)
T ss_pred eEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhc-------------cCC------CChHHHHHHHHHHhc
Confidence 232 3567766444 5567776632211 111110 0000 000 11223333333332
Q ss_pred --HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccccC
Q psy852 656 --LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQEQ 732 (891)
Q Consensus 656 --~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g 732 (891)
..-+++..+...+..+.+.+.|++..++.+..+....-+.+++........ ....++.+.|. +.|+.+..+.....
T Consensus 302 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~-~~~~~~~~~ll~~~gV~v~pg~~f~~ 380 (412)
T PTZ00433 302 TPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDI-KSDVEFYEKLLEEENVQVLPGEIFHM 380 (412)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcCCC-CCHHHHHHHHHHhcCEEEeCccccCC
Confidence 123444455666777888888987666665444344566667642100000 02457888886 47987665544433
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+ ++++. .++++++.++.|.+.+
T Consensus 381 ~~~iRis~~~--~~e~l~~al~~l~~~~ 406 (412)
T PTZ00433 381 PGFTRLTISR--PVEVLREAVERIKAFC 406 (412)
T ss_pred CCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 4456 88764 4778888888777655
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.021 Score=65.93 Aligned_cols=118 Identities=11% Similarity=0.001 Sum_probs=73.8
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeE---EEEecCCC----CcccHH
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL---KILEPDDK----NSLRGA 180 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v---~~V~~d~~----g~id~~ 180 (891)
++.+|+++ |...+.+||...+.. ...++-+|.....-|-+..-++.+.+... ...|.... ..-|++
T Consensus 98 f~~SGseA-~e~Aik~ar~~~~~~------~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~ 170 (395)
T PRK03715 98 FANSGAEA-NEGAIKLARKWGRKH------KNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIA 170 (395)
T ss_pred EeCCcHHH-HHHHHHHHHHHhhcc------CCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHH
Confidence 45678754 555666777542111 00112345555667888777665543221 11111111 124788
Q ss_pred HHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 181 TLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 181 ~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+|++.+.+. +.+|++.-...+.|.+-| +++|.++|++||+++++|-++.|+.
T Consensus 171 ~l~~~l~~~------~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~G 226 (395)
T PRK03715 171 SVEKLITDK------TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCG 226 (395)
T ss_pred HHHHHcCCC------ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 898887532 457777777788888877 9999999999999999999997743
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.021 Score=64.30 Aligned_cols=246 Identities=11% Similarity=0.101 Sum_probs=133.4
Q ss_pred CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CC
Q psy852 460 PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DK 538 (891)
Q Consensus 460 ~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~ 538 (891)
++..|+ +|+|+++++..++.+.-. . | .+.-.|++..-.+.....++.+.|++++.+|.+ ++
T Consensus 59 ~~~~Ii--it~Gs~~ai~~~~~~~~~----~----------g--~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 120 (350)
T TIGR03537 59 PDAQVL--PSAGSKEAIFHFPLVFID----P----------E--EDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKED 120 (350)
T ss_pred CCCcEE--EcCChHHHHHHHHHHHcC----C----------C--CCCceEEEcCCCCcchHHHHHhcCCEEEEcccCccc
Confidence 433566 788988988766544311 0 0 001247777778888888889999999999986 33
Q ss_pred -CCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------C-------CCCc
Q psy852 539 -NSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------G-------IEYA 582 (891)
Q Consensus 539 -G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------G-------i~~a 582 (891)
..+|+++|++++.+.. ..++++ +-.|++. |.++ .| + ...-
T Consensus 121 ~~~~d~~~l~~~~~~~~----~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 196 (350)
T TIGR03537 121 GFLLRLEKVEKSILEET----KIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIE 196 (350)
T ss_pred CCccCHHHHHHhhhhcc----EEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcC
Confidence 4589999999987632 122332 3456544 2221 01 0 0111
Q ss_pred cEEEE-cCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-Hhh
Q psy852 583 DSFNV-NVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LSG 658 (891)
Q Consensus 583 DSIs~-d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~G 658 (891)
..|.+ +++|.++.| .-.|+++ .++..+ +.+. ....+ +...+. +.+..+...+. ...
T Consensus 197 ~~i~~~s~SK~~g~~GlRiG~~~-~~~~~~-~~~~~~~~~~--------------~~~~~~----~~q~~~~~~l~~~~~ 256 (350)
T TIGR03537 197 NVLAFHSLSKRSGMTGYRSGFVA-GDEKLI-SFLRKLRANF--------------GVASPD----FVQAAAKAAWSDDNH 256 (350)
T ss_pred CEEEEeecccccCCccccceeee-cCHHHH-HHHHHHHHhh--------------ccCCCH----HHHHHHHHHhCCcHH
Confidence 13444 788987655 2256554 333222 2221 11111 000000 11111111111 122
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc--cCCeE
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~--~g~~~ 735 (891)
+++..++..++.+.+.+.|+.. ++++. ++..+ .+.+++++. .....+.+.|.+.|+.+..+... .....
T Consensus 257 ~~~~r~~l~~~~~~~~~~l~~~-g~~~~-~~~g~~~~~~~~~~~------~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~ 328 (350)
T TIGR03537 257 VLERRKIFKRKRDLFIEFFNKV-GLEYL-YPDATFYLWVKVPSG------IDAKDYALRLLENGIVVAPGENFGSGEEGY 328 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeEEEEEEECCCC------CCHHHHHHHHHHCCEEEcCchhhCCCCCCE
Confidence 3444555566777788888775 56655 34434 455666431 23468888898899875544432 22345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~e 757 (891)
+ +++. .+++++++.++.|++
T Consensus 329 ~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 329 VRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred EEEEec--CCHHHHHHHHHHHhc
Confidence 6 7764 467888888877764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.023 Score=63.69 Aligned_cols=202 Identities=10% Similarity=-0.026 Sum_probs=115.4
Q ss_pred EEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc-----------hhhh
Q psy852 509 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS-----------CYRK 575 (891)
Q Consensus 509 I~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~-----------c~~~ 575 (891)
|++..-.+......+...|++++.+| |++.|++++++ . ...++.. +-.|++. |.++
T Consensus 89 vl~~~p~y~~~~~~~~~~g~~~~~~~-------d~~~l~~~~~~-~---~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~ 157 (330)
T TIGR01140 89 VLVLAPTYSEYARAWRAAGHEVVELP-------DLDRLPAALEE-L---DVLVLCNPNNPTGRLIPPETLLALAARLRAR 157 (330)
T ss_pred EEEeCCCcHHHHHHHHHcCCEEEEeC-------CHHHHHhhccc-C---CEEEEeCCCCCCCCCCCHHHHHHHHHHhHhc
Confidence 55566677777777788888888887 78888888743 1 1122221 2345544 2211
Q ss_pred -----hcC----------C------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccC
Q psy852 576 -----SQG----------I------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 633 (891)
Q Consensus 576 -----ldG----------i------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~ 633 (891)
+|. + ..-+-+..+++|+++.| ..+|+++..++ .+ ..+..... .
T Consensus 158 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~-~~l~~~~~-------------~ 222 (330)
T TIGR01140 158 GGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPA-LL-ARLREALG-------------P 222 (330)
T ss_pred CCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHH-HH-HHHHhcCC-------------C
Confidence 111 0 11234556899999866 66899887653 22 22221100 0
Q ss_pred CcccccccccchHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHH
Q psy852 634 WGIPLSRRFRSLKLWFVIRTYGLSGL-QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRK 712 (891)
Q Consensus 634 ~ti~~SRr~~aL~lW~~L~~lG~~G~-~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~ 712 (891)
++ ...+.+.++.+.+...++ ++..++..++.+++.+.|++.+.+++. ++..+.+++.+. ...+
T Consensus 223 ~~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~---------~~~~ 286 (330)
T TIGR01140 223 WT------VNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTP---------DAAA 286 (330)
T ss_pred CC------chHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcC---------CHHH
Confidence 11 112334444444444344 455567778888899999988766654 333444555543 1357
Q ss_pred HHHHHHhCCcEEEeecccc--CCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 713 LLEDINASGRLHMVPASQE--QNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 713 L~~~L~~~G~~~~s~s~~~--g~~~l-~sv~~~tT~edId~li~~L 755 (891)
+.++|.++|+++..+.... +...+ +++.. ..++ ++++++|
T Consensus 287 l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~--~~~~-~~~~~~l 329 (330)
T TIGR01140 287 LHEALARRGILIRDFDNFPGLDPRYLRFALPT--DEEN-DRLEEAL 329 (330)
T ss_pred HHHHHHHCCEEEEECCCCCCCCCCEEEEEecC--HHHH-HHHHHhh
Confidence 8899999998766555432 33456 77653 3355 8887765
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.027 Score=64.48 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=44.8
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.++.. .+.+|++.-..+.+|.+-| +++|.++|++||+++++|.++.|+
T Consensus 166 d~~~le~~l~~~-----~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~ 224 (400)
T PTZ00125 166 DVEALEKLLQDP-----NVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGL 224 (400)
T ss_pred CHHHHHHHhCCC-----CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 899999988621 2456666666788999888 999999999999999999998653
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.065 Score=61.96 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=84.2
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|.+ +..|.++.=+..|+++.+++ +.+.+... . ...+.. +-++.......+|+.+... +
T Consensus 245 pDi~--t~sK~l~gG~~ig~~~~~~~--~~~~~~~~---~----------~~~t~~-~~pl~~aaa~a~l~~l~~~---~ 303 (406)
T PRK12381 245 PDVL--TTAKALGGGFPIGAMLTTEK--CASVMTVG---T----------HGTTYG-GNPLASAVAGKVLELINTP---E 303 (406)
T ss_pred CCEE--EehhhhhCCCceEEEEEcHH--HHhhcCCC---C----------CCCCCC-CCHHHHHHHHHHHHHHhhc---c
Confidence 4655 44688865567888887654 22222110 0 011111 1222223333444444322 4
Q ss_pred HHHHHHHHHHHHHHHhccCC-CcEEeCCC-ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 662 YIRRHCELAKLFEGKVRRDP-RFEISNDV-RL-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~-~~eil~~~-~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
..++..++.++|.+.|++.. .+.++..+ .. .++.+.+.+. .......+.+.|.++|++.. +. +...+ +
T Consensus 304 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~----~~~~~~~~~~~l~~~Gv~v~-~~---g~~~lRl 375 (406)
T PRK12381 304 MLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAE----YAGKAKQISQEAAKAGVMVL-IA---GPNVVRF 375 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCc----hhhHHHHHHHHHHHCCcEEe-eC---CCCEEEE
Confidence 56677778888888887641 22222222 12 3445555321 01245678889999998853 21 33466 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~~ 760 (891)
++...+|++|||++++.|++.+.
T Consensus 376 ~p~~~~t~~~i~~~~~~l~~~l~ 398 (406)
T PRK12381 376 APALNISEEEITTGLDRFARACE 398 (406)
T ss_pred eCCccCCHHHHHHHHHHHHHHHH
Confidence 88877899999999999998773
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.027 Score=64.76 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=109.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH-H---HcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-~---l~gv~v~~Vp~d~~G~mD~ 543 (891)
+++|+++++..++.+. .+ +.-.|+++...+.+....+ . ..++++..++. .|+
T Consensus 71 ~~~gg~~Ai~~~l~al----l~---------------~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~-----~d~ 126 (382)
T TIGR02080 71 VTNTGMSAIHLVTTAL----LG---------------PDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ-----GDE 126 (382)
T ss_pred EEcCHHHHHHHHHHHH----cC---------------CCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC-----CCH
Confidence 5678888887776553 11 1124666666766544333 2 23456655542 378
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hc-----C-----C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQ-----G-----I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ld-----G-----i-~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.+ ..+++. +..|... |+++ +| + + -++|-+..++|||++++
T Consensus 127 ~~l~~ai~~~t----klV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~ 202 (382)
T TIGR02080 127 QALRAALAQKP----KLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGH 202 (382)
T ss_pred HHHHHhcCcCc----eEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCC
Confidence 88888886532 122222 2234332 2221 11 1 1 25799999999999988
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|++..++++.... +.....++ +-....+-.|..++ |.+-+..++++..+++..++
T Consensus 203 ~~~~~G~i~~~~~~~~~~-l~~~~~~~-----------------g~~~sp~~a~l~lr--~l~tl~~R~~~~~~na~~~a 262 (382)
T TIGR02080 203 SDVIAGAVIAKDPQVAEE-LAWWANNL-----------------GVTGGAFDSYLTLR--GLRTLVARMRLQQRNAQAIV 262 (382)
T ss_pred CCceeEEEEeCCHHHHHH-HHHHHHcc-----------------CCCCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHH
Confidence 76 77777766643322 11100111 11133455676655 66777888899999999999
Q ss_pred HHhccCCCcEEeCCC-----------------ceeEEEEEecC
Q psy852 675 GKVRRDPRFEISNDV-----------------RLGLVCFRLRS 700 (891)
Q Consensus 675 ~~L~~~~~~eil~~~-----------------~~~iV~Fr~~~ 700 (891)
+.|++.|.++-+.-| -.++++|.+++
T Consensus 263 ~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 263 EYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred HHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 999998887643211 13699999964
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.036 Score=62.91 Aligned_cols=235 Identities=11% Similarity=0.002 Sum_probs=129.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +|+|+++++..++.+.-. +...|++..-.......++...|++++.+|.++++.+|
T Consensus 90 ~I~--it~G~~~~l~~~~~~~~~-------------------~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d 148 (368)
T PRK03317 90 NVW--AANGSNEILQQLLQAFGG-------------------PGRTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLD 148 (368)
T ss_pred hEE--ECCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCC
Confidence 555 678888888776654311 11235555555556666777788888888887788999
Q ss_pred HHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh------------hh--cCC----C----CccEEEE-c
Q psy852 543 GATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR------------KS--QGI----E----YADSFNV-N 588 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~------------~l--dGi----~----~aDSIs~-d 588 (891)
+++|++++++... ..+++++ -.|+.. |.. .+ +|. . .-+.|.+ +
T Consensus 149 ~~~l~~~~~~~~~---~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~S 225 (368)
T PRK03317 149 VDAAVAAIAEHRP---DVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRT 225 (368)
T ss_pred HHHHHHHHhccCC---CEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEe
Confidence 9999999875311 1233332 245443 110 01 111 0 0123333 6
Q ss_pred CcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-HhhHHHHHHH
Q psy852 589 VNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LSGLQKYIRR 665 (891)
Q Consensus 589 ~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~G~~~~i~~ 665 (891)
..|.++.| .-+|+++.. ++ +.+.+. .... +. .+ .+.+.++...+. .+.+.+.+++
T Consensus 226 fSK~~g~~GlRiG~~~~~-~~-~~~~l~~~~~~--------------~~--~s----~~~~~a~~~~l~~~~~~~~~~~~ 283 (368)
T PRK03317 226 MSKAFAFAGGRLGYLAAA-PA-VVDALRLVRLP--------------YH--LS----AVTQAAARAALRHADELLASVAA 283 (368)
T ss_pred chhhhccchhhhhhhhCC-HH-HHHHHHhcCCC--------------CC--CC----HHHHHHHHHHhhCHHHHHHHHHH
Confidence 77877644 345666542 22 212111 0000 10 11 222333333332 2344555666
Q ss_pred HHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCC
Q psy852 666 HCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKR 744 (891)
Q Consensus 666 ~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT 744 (891)
..+..+++.+.|+.. ++++. ++..+.+.|.-.+ ....+.+.|.++|+.+. +.. ...++ ++++ +
T Consensus 284 ~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~~~Gv~v~-~~~--~~~~iRi~~~---~ 347 (368)
T PRK03317 284 LRAERDRVVAWLREL-GLRVA-PSDANFVLFGRFA--------DRHAVWQGLLDRGVLIR-DVG--IPGWLRVTIG---T 347 (368)
T ss_pred HHHHHHHHHHHHHHC-CCEeC-CCCCcEEEEeccC--------CHHHHHHHHHHCCEEEE-eCC--CCCeEEEecC---C
Confidence 677777888888875 67654 3455555442111 24678888888998754 222 23456 7765 6
Q ss_pred HHHHHHHHHHHHHHH
Q psy852 745 KDDLAYKRSFFVRML 759 (891)
Q Consensus 745 ~edId~li~~L~ei~ 759 (891)
.+++++++++|+++.
T Consensus 348 ~~~~~~~~~~l~~~~ 362 (368)
T PRK03317 348 PEENDAFLAALAEVL 362 (368)
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999998875
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0073 Score=68.25 Aligned_cols=82 Identities=18% Similarity=0.101 Sum_probs=64.1
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-........+...|.+++.||+++++.+|++.+++ + .. +-+|.++.-+|.||.+-|.+++.++++..
T Consensus 105 vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~~~~l~~-~-~~------~~li~i~nP~NPTG~~~~~~~l~~l~~~~ 176 (354)
T PRK04635 105 IACFGPTYGMYAISAETFNVGVKALPLTADYQLPLDYIEQ-L-DG------AKLVFICNPNNPTGTVIDRADIEQLIEMT 176 (354)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHh-c-cC------CCEEEEeCCCCCCCccCCHHHHHHHHHhC
Confidence 5555555555555667778899999998888999999873 3 21 34677789999999999999999999864
Q ss_pred -CCceeeeccc
Q psy852 225 -DVWLHVDGAY 234 (891)
Q Consensus 225 -~~~lHvDaA~ 234 (891)
+++|.+|.||
T Consensus 177 ~~~~vivDeay 187 (354)
T PRK04635 177 PDAIVVVDEAY 187 (354)
T ss_pred CCcEEEEeCch
Confidence 6888899998
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.037 Score=63.71 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=68.4
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCC-ChHHHHHHHHcCC------------eEEEEecCCCC
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEA-HSCVEKAAMMAFV------------RLKILEPDDKN 175 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~-H~Sv~kaa~~~~~------------~v~~V~~d~~g 175 (891)
+.+|+. .|...+.+||..... +.|....+..|++-... |-+..-++.+.+. .+..++-+
T Consensus 100 ~~SGs~-A~e~ai~~a~~~~~~----~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 171 (401)
T TIGR01885 100 MNTGAE-AVETAIKLARKWGYK----VKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN--- 171 (401)
T ss_pred eCccHH-HHHHHHHHHHHHhhh----hcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC---
Confidence 456764 455566667664211 01111224446655555 5455555544321 12333322
Q ss_pred cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccC
Q psy852 176 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 176 ~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG 236 (891)
|+++|++.+++. +.....|++--..+++|.+-| +++|.++|++||+++.+|-++.|
T Consensus 172 --d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g 231 (401)
T TIGR01885 172 --NLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTG 231 (401)
T ss_pred --CHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence 689999988643 122344445445556688887 99999999999999999999855
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.11 Score=59.37 Aligned_cols=258 Identities=13% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHhhc--------cCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccce-EEEecccchH
Q psy852 447 ELAKLFEGKVR--------RDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKL-MAYCSKEAHS 517 (891)
Q Consensus 447 elAr~l~~~L~--------~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~-vI~~S~~aH~ 517 (891)
++-+.+++.+. -.++ +|+ +|.|+++++..++.+.-. +.. .|++..-...
T Consensus 70 ~Lr~aia~~~~~~~~~~~~v~~~-~I~--it~Ga~~al~~~~~~~~~-------------------~g~~~Vlv~~P~y~ 127 (374)
T PRK02610 70 ALKQAIAEYVNESAAGSSQITPA-NIS--VGNGSDELIRSLLIATCL-------------------GGEGSILVAEPTFS 127 (374)
T ss_pred HHHHHHHHHhCccccccCCCCHH-HEE--EcCChHHHHHHHHHHHcC-------------------CCCCeEEEcCCChH
Q ss_pred HHHHHHHHcCceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc----------------------
Q psy852 518 CVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS---------------------- 571 (891)
Q Consensus 518 Sv~Kaa~l~gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~---------------------- 571 (891)
....++...|.+++.+|.+++ +.+|+++|++++++....+...+++++- .|++.
T Consensus 128 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~ 207 (374)
T PRK02610 128 MYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEA 207 (374)
T ss_pred HHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEecc
Q ss_pred --------hhhhhcCCCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc
Q psy852 572 --------CYRKSQGIEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 572 --------c~~~ldGi~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
....+...+.+=. .-++.|.++.| .=+|+++. ++..+.........| ..
T Consensus 208 Y~~~~~~~~~~~~~~~~~~iv-i~SfSK~~g~~GlRiG~~v~-~~~l~~~l~~~~~~~--------------------~~ 265 (374)
T PRK02610 208 YFEFSQTTLVGELAQHPNWVI-LRTFSKAFRLAAHRVGYAIG-HPELIAVLEKVRLPY--------------------NL 265 (374)
T ss_pred ccccCccchHHHHhcCCCEEE-EEecchhccCcccceeeeec-CHHHHHHHHHhcCCC--------------------CC
Q ss_pred cchHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 643 RSLKLWFVIRTYGL-SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 643 ~aL~lW~~L~~lG~-~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
..+.+.++...++. +.+.+.+++..+.++.+.+.|++++++.+. +...+-+.+++++ ......+.+.|.+.|
T Consensus 266 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~~g~f~~~~l~~------~~~~~~~~~~l~~~g 338 (374)
T PRK02610 266 PSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLRVW-PSAANFLYLRLSQ------DAALAALHQALKAQG 338 (374)
T ss_pred CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEeC-CCcceEEEEeCCC------CCCHHHHHHHHHHCC
Q ss_pred cEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 722 ~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
+.+.. ....+ ++++ +.++++++++.|++++..++
T Consensus 339 i~v~~-----~~~~lRls~~---~~~~~~~~l~~l~~~l~~~~ 373 (374)
T PRK02610 339 TLVRH-----TGGGLRITIG---TPEENQRTLERLQAALTQLE 373 (374)
T ss_pred EEEEe-----CCCeEEEeCC---CHHHHHHHHHHHHHHHhhcC
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.036 Score=64.59 Aligned_cols=256 Identities=7% Similarity=0.038 Sum_probs=132.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC--CCCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~--d~~G~ 540 (891)
+|+ +|+|+++++..++.+.-. +.-.|+++.-..+.....+.+.+.+++.++. +.++.
T Consensus 119 ~v~--it~G~~~al~l~~~~l~~-------------------~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~ 177 (430)
T PLN00145 119 DIY--LTAGCAQAIEIIMSVLAQ-------------------PGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWE 177 (430)
T ss_pred hEE--EeCCHHHHHHHHHHHhcC-------------------CCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCc
Confidence 566 789999998877665310 1123666666666666677788888888876 34678
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCCCCcc------------------
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGIEYAD------------------ 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi~~aD------------------ 583 (891)
+|+++|++++++.+. -++++ +-.|++. |.++ .|.+ +.|
T Consensus 178 ~d~~~l~~~~~~~~~----~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~-Y~~~~~~~~~~~~~~~~~~~~ 252 (430)
T PLN00145 178 VDLEGVEALADENTV----AMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEV-YDHLTFGSKPFVPMGVFGEVA 252 (430)
T ss_pred CCHHHHHHHhCcCce----EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecc-chhhccCCCCccchhhhcccC
Confidence 999999998876422 22222 2345544 2221 1111 001
Q ss_pred -EEE-EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH---Hh
Q psy852 584 -SFN-VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG---LS 657 (891)
Q Consensus 584 -SIs-~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG---~~ 657 (891)
-|+ -+..|..++| .=+|+++..++..+....... ..+. ....... ....+.+++....+. ..
T Consensus 253 ~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~-~~~~-------~~~~~~~----~~~~~~Q~a~~~~l~~~~~~ 320 (430)
T PLN00145 253 PVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVV-DSIR-------NYLNIST----DPATFVQGAIPQIIANTKEE 320 (430)
T ss_pred cEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHH-HHHH-------HHhcccC----CCCHHHHHHHHHHHhcCHHH
Confidence 111 1244543333 334555443221110000000 0000 0000000 011233444444443 23
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-eeEEEEEecCCcchhhhhhHHHHHHHH-HhCCcEEEeeccccCCeE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-LGLVCFRLRSENNLIADQNNRKLLEDI-NASGRLHMVPASQEQNDE 735 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L-~~~G~~~~s~s~~~g~~~ 735 (891)
-+++..+...+.++.+.+.|+.++++.+...|+ ..-+.+++......... ....+..+| .+.|+++.-++......+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~-~~~~~~~~ll~~~gV~v~pG~~fg~~~~ 399 (430)
T PLN00145 321 FFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIK-DDMDFCCKLAKEESVVVLPGSALGMKNW 399 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcCCCC-CHHHHHHHHHHhCCEEEeCccccCCCCe
Confidence 466777777888899999999888887654443 44555555321000000 234555555 456777655554444556
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ +++. ...++++..++.|.+.+
T Consensus 400 lRis~~--~~~~~l~~al~rl~~~~ 422 (430)
T PLN00145 400 LRITFA--IDPPSLEDGLERLKSFC 422 (430)
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHH
Confidence 7 8876 35677777777666554
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.011 Score=67.94 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=69.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhc-CCcceEEEeecccCccccccCH---HHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETM-GYIPFFVSTTLGTTSCCSFDNL---AEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~-g~~p~~V~~t~Gtt~~GavDpl---~~I 217 (891)
.|++.+-+.+....++...|.+++.|+++ ++..+|++.|...+++..++ ...+.+++.+..+|.||.+-+. ++|
T Consensus 121 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l 200 (403)
T PRK08636 121 VAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERL 200 (403)
T ss_pred EEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHH
Confidence 46666666666666667778899999875 44689998776555543322 2235678888889999999666 677
Q ss_pred HHHHHHcCCceeeeccccCC
Q psy852 218 GPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~ 237 (891)
+++|++++++|.+|=+|+.+
T Consensus 201 ~~~a~~~~~~II~De~Y~~l 220 (403)
T PRK08636 201 VALAKKERFYIISDIAYADI 220 (403)
T ss_pred HHHHHHcCcEEEEeccchhh
Confidence 78899999999999999543
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.03 Score=63.73 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhccC-CCcEEeCC--CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 661 KYIRRHCELAKLFEGKVRRD-PRFEISND--VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~-~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
+.+++..++.+++.+.|++. +++..+.+ ....++.+.+.+ ....+.+.|.++|++... .+...+
T Consensus 287 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~--------~~~~~~~~l~~~gv~v~~----~g~~~lR 354 (377)
T PRK02936 287 SFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE--------EVAPVIEQLREEGLLVLS----AGPNVIR 354 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecc--------hHHHHHHHHHHCCeEEec----CCCCEEE
Confidence 44556666777777777652 22222211 223466677642 156788888889977432 233566
Q ss_pred EEecCCCCHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei 758 (891)
++++...++++|+++++.|++.
T Consensus 355 i~p~~~~~~~~i~~~i~~l~~~ 376 (377)
T PRK02936 355 LLPPLVVTKEELDQAVYLLKKV 376 (377)
T ss_pred EECCcccCHHHHHHHHHHHHHh
Confidence 8887788999999999998764
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0053 Score=68.96 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=66.5
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-++......+...|.+++.|+.++++.+|+++|++.+.+. -+++++..+|.||.+-+.++|.++++ +
T Consensus 97 V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-------~~v~~~~P~NPtG~~~~~~~l~~i~~-~ 168 (337)
T PRK03967 97 IVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKAKNA-------SAVFICSPNNPTGNLQPEEEILKVLE-T 168 (337)
T ss_pred EEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhccCC-------CEEEEeCCCCCCCCCCCHHHHHHHHh-c
Confidence 666666666555556677889999999888899999998764221 24556778999999999999999995 6
Q ss_pred CCceeeeccccC
Q psy852 225 DVWLHVDGAYAG 236 (891)
Q Consensus 225 ~~~lHvDaA~GG 236 (891)
++++.+|.+|+.
T Consensus 169 ~~~ii~De~y~~ 180 (337)
T PRK03967 169 GKPVVLDEAYAE 180 (337)
T ss_pred CCEEEEECchhh
Confidence 999999999954
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.034 Score=63.29 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=40.9
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCcccccc----CHHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD----NLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD----pl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+.+. +.+|++....+..|.+. .+++|.++|++||+++.+|-++.|+
T Consensus 156 d~~~l~~~~~~~------~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~ 213 (377)
T PRK02936 156 DIKALKEVMNEE------VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGI 213 (377)
T ss_pred CHHHHHHhccCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 789999888643 34555555556666554 3999999999999999999999663
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.064 Score=61.01 Aligned_cols=90 Identities=8% Similarity=0.045 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-cCCeEE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ-EQNDEV 736 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~-~g~~~l 736 (891)
-+.+.++...+.++++.+.|++.+++..+.++..+-+.++++ ..+++.+.|.+.|+.+..+... .....+
T Consensus 270 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~---------~~~~~~~~l~~~gI~v~~~~~~~~~~~~~ 340 (364)
T PRK04781 270 VTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD---------DAEAAFQALLAAGVVVRDQRAAPRLSDAL 340 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC---------CHHHHHHHHHHCCeEEeeCCCCCCCCCeE
Confidence 345566667778889999999887775444556667777764 1357788888999886554422 123356
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++ +.++.++++++|+++.
T Consensus 341 Ris~~---~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 341 RITLG---TPEQNDRVLAALQRTQ 361 (364)
T ss_pred EEeCC---CHHHHHHHHHHHHHHH
Confidence 8876 6899999999998753
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0053 Score=69.40 Aligned_cols=86 Identities=13% Similarity=0.047 Sum_probs=67.8
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|+++.-++......+...|.+++.++. +++.+|+++|++.+++. +.+|+++..+|.+|.+-|+++|.++++.+
T Consensus 111 vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 183 (367)
T PRK02731 111 VIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVTPR------TRLVFIANPNNPTGTYLPAEEVERFLAGV 183 (367)
T ss_pred EEEecCCHHHHHHHHHHcCCeEEEecc-cCCCCCHHHHHHHhCCC------CcEEEEeCCCCCCCcCCCHHHHHHHHHhC
Confidence 666666665555555667789999988 45788999999988642 34666788999999999999999999875
Q ss_pred --CCceeeeccccCC
Q psy852 225 --DVWLHVDGAYAGS 237 (891)
Q Consensus 225 --~~~lHvDaA~GG~ 237 (891)
++++.+|.+|..+
T Consensus 184 ~~~~~li~De~y~~~ 198 (367)
T PRK02731 184 PPDVLVVLDEAYAEY 198 (367)
T ss_pred CCCcEEEEECcHHHh
Confidence 8999999999543
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0063 Score=70.25 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-----CCcCH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-----NSLRG 543 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-----G~mD~ 543 (891)
+.|.|-+|..++.++-. +.-.|++...+|-|+..++.+.|...+.|++..+ +.+++
T Consensus 88 vnGsT~g~~a~i~a~~~-------------------~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi~~~i~~ 148 (417)
T PF01276_consen 88 VNGSTSGNQAMIMALCR-------------------PGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGIIGGISP 148 (417)
T ss_dssp SSHHHHHHHHHHHHHTT-------------------TTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-BEEB-G
T ss_pred ecCchHHHHHHHHHhcC-------------------CCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCCccCCCh
Confidence 34667778877776521 2335999999999999999999999888876321 35666
Q ss_pred -----HHHHHHHHhhhhcCCccEEEEecC----Cccc--------hhh-----hhcC----------------CCCcc--
Q psy852 544 -----ATLRQVMQQDETMGYIPFFVSTTL----GTTS--------CYR-----KSQG----------------IEYAD-- 583 (891)
Q Consensus 544 -----~~Le~aI~~d~~~g~ip~~Vvata----GTT~--------c~~-----~ldG----------------i~~aD-- 583 (891)
+.++++|++....+. +-+|+.+. |.+. |++ ++|. -.+||
T Consensus 149 ~~~~~~~i~~~l~~~p~~k~-~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~ 227 (417)
T PF01276_consen 149 DEFNEEDIEEALKEHPDAKA-PRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRP 227 (417)
T ss_dssp GGGSHHHHHHHHHHCTTCHC-ESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-C
T ss_pred hhhhHHHHHHHHHhCccccC-ceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCccc
Confidence 999999998644322 33333333 4433 322 1111 24578
Q ss_pred -----EEEEcCcccCCcccccEEEEEeCCc
Q psy852 584 -----SFNVNVNKWLLTAFDSSCLWVADRY 608 (891)
Q Consensus 584 -----SIs~d~HK~L~~P~g~G~llvR~~~ 608 (891)
-++-|.||.|.+--.++++.+++..
T Consensus 228 ~~~~~~vvqS~HKtL~altQts~lh~~~~~ 257 (417)
T PF01276_consen 228 NDPGIIVVQSTHKTLPALTQTSMLHVKGDR 257 (417)
T ss_dssp TSBEEEEEEEHHHHSSS-TT-EEEEEETCC
T ss_pred cccceeeeechhhcccccccceEEEecCCC
Confidence 9999999999999999999999885
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.05 Score=61.55 Aligned_cols=237 Identities=11% Similarity=0.041 Sum_probs=130.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ ++.|+++++..++.+. .. ++ +++.+. ........++..|++++.+|.+++ ..
T Consensus 74 ~i~--it~Ga~~~l~~~~~~l-----~~--------------g~-viv~~P-~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 130 (356)
T PRK08056 74 WIL--AGNGETESIFAVVSGL-----KP--------------RR-AMIVTP-GFAEYRRALQQVGCEIRRYSLREADGWQ 130 (356)
T ss_pred hEE--ECCCHHHHHHHHHHHh-----CC--------------CC-EEEeCC-CcHHHHHHHHHcCCeEEEEecccccCCC
Confidence 566 6778888877665432 00 12 233332 233445566788999999998643 34
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----h---------cC------CC--CccE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----S---------QG------IE--YADS 584 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----l---------dG------i~--~aDS 584 (891)
+| +++++.+.+. ...++++ +-.|.+. |.++ + ++ +. .-+-
T Consensus 131 ~~-~~~~~~~~~~----~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i 205 (356)
T PRK08056 131 LT-DAILEALTPD----LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLW 205 (356)
T ss_pred cc-HHHHHhccCC----CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEE
Confidence 44 3454555321 1222232 2345443 2221 1 11 00 1234
Q ss_pred EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh-HHHH
Q psy852 585 FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG-LQKY 662 (891)
Q Consensus 585 Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G-~~~~ 662 (891)
+..+.+|+++.| .-+|+++..+...+......... ++. ..+.++++...+.... ..+.
T Consensus 206 ~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~--------------~~~------~~~~~~~a~~~l~~~~~~~~~ 265 (356)
T PRK08056 206 VLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMP--------------WSI------NAFAALAGEVILQDRAYQQAT 265 (356)
T ss_pred EEEechhhccCcchhheeeecCCHHHHHHHHHhCCC--------------Cch------hHHHHHHHHHHhCCHHHHHHH
Confidence 668899999866 56888877544332221111100 111 1122333333332222 3444
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccC--CeEE-EEe
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQ--NDEV-FEL 739 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g--~~~l-~sv 739 (891)
.+...+.++++.+.|++++++.+. ++..+-+.+++.. ...++.+.|.+.|+....+....+ ...+ +++
T Consensus 266 ~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~ 336 (356)
T PRK08056 266 WQWLAEEGARFYQALCALPLLTVW-PGRANYLFLRCER--------PDIDLQRALLTQRILIRSCANYPGLDSRYYRVAI 336 (356)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEc-CCCCcEEEEEcCC--------ChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEE
Confidence 556678888899999888887765 4456666666642 134678888889987555543322 2356 887
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei~ 759 (891)
+ +.++.+.++++|+++.
T Consensus 337 ~---~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 337 R---SAAENERLLAALRNVL 353 (356)
T ss_pred c---CHHHHHHHHHHHHHHH
Confidence 6 6789999999998653
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.042 Score=62.31 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=41.9
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccc----cCHHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF----DNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav----Dpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+.+. +.+|+++..++.+|.+ +++++|.++|+++++++++|.++.|+
T Consensus 159 d~~~l~~~~~~~------~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~ 216 (379)
T TIGR00707 159 DIESLKKAIDDE------TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGI 216 (379)
T ss_pred CHHHHHHHhhhC------eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 899999988653 2355566666666754 34899999999999999999999653
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0081 Score=68.83 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=65.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-........+...|.+++.|+++++ ..+|+++|++.+.+.. -+|+++-.+|.||.+-+ +++|++
T Consensus 119 vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------k~i~l~~p~NPtG~~~s~~~~~~l~~ 192 (393)
T TIGR03538 119 VVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRC------QLLFVCSPGNPTGAVLSLDTLKKLIE 192 (393)
T ss_pred EEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcc------eEEEEeCCCCCcCcccCHHHHHHHHH
Confidence 555544555555556677889999999754 4689999998876532 35555678999999977 788888
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|++++++|.+|-+|+.
T Consensus 193 ~a~~~~~~ii~De~Y~~ 209 (393)
T TIGR03538 193 LADQYGFIIASDECYSE 209 (393)
T ss_pred HHHHCCEEEEECcchhh
Confidence 99999999999999953
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.082 Score=60.33 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=56.0
Q ss_pred eEEEecCCCChHHHHHHH--H--cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAM--M--AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIG 218 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~--~--~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~ 218 (891)
-.++++...|+.-...++ . .|.+++.++.+ |+++|+++...+ .+.|.+...++.-+.++++.+|.
T Consensus 165 ~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~~~~~------~~gv~vQyP~~~G~~~~d~~~l~ 233 (450)
T COG0403 165 NKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESADDGD------VFGVLVQYPNTFGIVEEDLRALI 233 (450)
T ss_pred ceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhccccC------eEEEEEecCCCCCccchhHHHHH
Confidence 349999999998877774 2 34677776666 888888872223 47899999886544888899999
Q ss_pred HHHHHcCCc
Q psy852 219 PVAKEFDVW 227 (891)
Q Consensus 219 ~i~~~~~~~ 227 (891)
+.+++.+..
T Consensus 234 ~~~h~~~al 242 (450)
T COG0403 234 EAAHSAGAL 242 (450)
T ss_pred HHHhhcCCE
Confidence 999999753
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.019 Score=65.88 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=70.0
Q ss_pred CccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 581 YADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
++|-+.+++|||+++|-+ .|+++.++++.... +. .++. ..+....+...|..+ .|...
T Consensus 185 gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~-~~----~~~~-------------~~G~~~~~~~~~l~~--~gl~t 244 (380)
T PRK06176 185 GADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQE-IA----FFQN-------------AIGGVLGPQDSWLLQ--RGIKT 244 (380)
T ss_pred CCCEEEecCceeccCCccceeeEEEecHHHHHHH-HH----HHHH-------------HhcCCCCHHHHHHHH--hccCc
Confidence 689999999999999865 66666665432211 11 0000 001111223346554 36777
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+..++++..+++..+.+.|++.|.++-+.-| -.++++|.+++. +...++++.|+-
T Consensus 245 l~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~------~~~~~f~~~l~~ 316 (380)
T PRK06176 245 LGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKND------SEAVAFVESLKL 316 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH------HHHHHHHHcCCc
Confidence 8889999999999999999998887543211 136999999632 233455555543
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.1 Score=59.06 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 645 LKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 645 L~lW~~L~~lG~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
+.++.....+.... +.+..+...+.++++.+.|++.+++++.. +..+-+++++++ ..++.+.|.+.|+.
T Consensus 248 ~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~g~f~~~~~~~---------~~~~~~~l~~~gI~ 317 (354)
T PRK06358 248 FADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYK-PSVNFIFFKLEK---------PIDLRKELLKKGIL 317 (354)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcC-CcceEEEEEcCc---------hHHHHHHHHHCCeE
Confidence 44455555554333 36666777788889999998887776654 455666666642 25788888889987
Q ss_pred EEeecccc--CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 724 HMVPASQE--QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 724 ~~s~s~~~--g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+..+.... +...+ ++++ +.++.++++++|+++.
T Consensus 318 v~~~~~f~~~~~~~iRls~~---~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 318 IRSCSNYRGLDENYYRVAVK---SREDNKKLLKALEVIL 353 (354)
T ss_pred EEECCCCCCCCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 66555442 23456 8876 7789999999998764
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.086 Score=60.46 Aligned_cols=249 Identities=11% Similarity=0.077 Sum_probs=130.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-CCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G~m 541 (891)
.|+ +++|+++++..++.+.- . +.-.|++..-.+......+...|.+++.+|.+++ +.+
T Consensus 93 ~i~--it~G~~~al~~~~~~~~----~---------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 151 (391)
T PRK07309 93 EIL--VTIGATEALSASLTAIL----E---------------PGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVL 151 (391)
T ss_pred cEE--EeCChHHHHHHHHHHhc----C---------------CCCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcC
Confidence 455 68899998887765421 0 1123666666777777788888999999998764 579
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC---------C--C-----cc--E
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI---------E--Y-----AD--S 584 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi---------~--~-----aD--S 584 (891)
|+++|++++++... +...++++ +-.|++. |.++ +|.+ . . .+ -
T Consensus 152 d~~~l~~~~~~~~~-~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i 230 (391)
T PRK07309 152 TPEMLEKAILEQGD-KLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTI 230 (391)
T ss_pred CHHHHHHHhhccCC-CeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEE
Confidence 99999999975321 11122322 3456543 3221 1111 0 0 01 2
Q ss_pred EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH--hhHHH
Q psy852 585 FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL--SGLQK 661 (891)
Q Consensus 585 Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~--~G~~~ 661 (891)
..-+.+|.++.| .-+|+++...+ .+.. +.....|.. .....+.+....+.+.. .-...
T Consensus 231 ~~~S~SK~~g~~GlRvG~~v~~~~-~~~~-~~~~~~~~~-----------------~~~~~~~q~~~~~~l~~~~~~~~~ 291 (391)
T PRK07309 231 LINGLSKSHAMTGWRIGLIFAPAE-FTAQ-LIKSHQYLV-----------------TAATTMAQFAAVEALTNGKDDALP 291 (391)
T ss_pred EEecChhhccCccceeEEEEeCHH-HHHH-HHHHHhhcc-----------------cCCChHHHHHHHHHHhCChhHHHH
Confidence 334677776655 22566654322 2221 110001110 00111222222233221 11222
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecc--ccCCeEE-E
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPAS--QEQNDEV-F 737 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~--~~g~~~l-~ 737 (891)
..++..+.++++.+.|++. ++++..+.....++.++++. .+.....+.++|. +.|+.+..+.. ..+...+ +
T Consensus 292 ~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~~~~~~l~~~----~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi 366 (391)
T PRK07309 292 MKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYIFAKIPAG----YNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRL 366 (391)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEECCCC----CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEE
Confidence 3344456677788888776 56655432222344455422 1123456776654 57877554442 2234456 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~ 759 (891)
++.. +.++++..++.|.+.+
T Consensus 367 ~~~~--~~~~l~~~i~~l~~~~ 386 (391)
T PRK07309 367 SYAA--SMETIKEAMKRLKEYM 386 (391)
T ss_pred EecC--CHHHHHHHHHHHHHHH
Confidence 8764 5788888888887665
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.056 Score=62.80 Aligned_cols=306 Identities=14% Similarity=0.089 Sum_probs=158.5
Q ss_pred CChhHH-HHHHHHHHhcHHHHHHHHHHHH-----------------HHHHHHHHhhccCCccccccCCCCCcchhHHHHH
Q psy852 419 RRFRSL-KLWFVIRTYGLSGLQKYIRRHC-----------------ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCM 480 (891)
Q Consensus 419 r~~~~l-~~w~~l~~~g~~G~~~ii~~~l-----------------elAr~l~~~L~~~~~~eVv~~itsggsean~~al 480 (891)
|=.++. .+|.+.--+|..-+.+.+++.+ +||+.+.+..-+-+--.|. ++.|||||+=+|+
T Consensus 45 r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vF--f~~sGSeAvEtAl 122 (449)
T COG0161 45 RYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVF--FTDSGSEAVETAL 122 (449)
T ss_pred EEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCccEEE--EeCCchHHHHHHH
Confidence 334554 5788888888888887777764 4566666655421112344 7899999999999
Q ss_pred HHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC-------------ceEEEecCC------CCCCc
Q psy852 481 LAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF-------------VRLKILEPD------DKNSL 541 (891)
Q Consensus 481 ~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g-------------v~v~~Vp~d------~~G~m 541 (891)
..|+..+..+.+. ..+-.|-....-|=+-.-++.++| ..+..+|.- ..+.-
T Consensus 123 Kma~qY~~~~G~p----------~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~ 192 (449)
T COG0161 123 KMALQYWRARGQP----------QRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEG 192 (449)
T ss_pred HHHHHHHHhcCCC----------cceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCC
Confidence 9999998765431 111112112222322222221221 223334331 11222
Q ss_pred C------HHHHHHHHHhhhhcCCccEEEEec--CCc---cc-------------hhhh------------------hcCC
Q psy852 542 R------GATLRQVMQQDETMGYIPFFVSTT--LGT---TS-------------CYRK------------------SQGI 579 (891)
Q Consensus 542 D------~~~Le~aI~~d~~~g~ip~~Vvat--aGT---T~-------------c~~~------------------ldGi 579 (891)
+ .+.|++.|.+... ..+..++++ .|+ .. |.++ +-+.
T Consensus 193 ~~~~~~~a~~le~~i~~~g~--~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~ 270 (449)
T COG0161 193 DEEFAEAADELEALILEHGP--ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFAC 270 (449)
T ss_pred hHHHHHHHHHHHHHHHhcCc--ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhh
Confidence 3 4456666665321 223333332 233 21 5442 1111
Q ss_pred CC----ccEEEEcCcccC-CcccccEEEEEeCCccchhhhccC-CCccccCCCCCccccCCcccccccccchHHHHHHHH
Q psy852 580 EY----ADSFNVNVNKWL-LTAFDSSCLWVADRYKLTSALVVD-PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT 653 (891)
Q Consensus 580 ~~----aDSIs~d~HK~L-~~P~g~G~llvR~~~~L~~~l~~~-~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~ 653 (891)
+. =|-|++. |.+ ++-.+.|++++.++ +-+++... ..-+.|+ +|.. +-+..+...-.+|+.
T Consensus 271 e~~gi~PDi~~~a--KGLT~GY~Pl~a~l~~~~--I~~~~~~~~~~~f~HG---------~TYs-ghPlacAaAla~L~i 336 (449)
T COG0161 271 EHAGIVPDILCLA--KGLTGGYLPLSAVLTSDR--IYEAFSDGDAGAFMHG---------HTYS-GNPLACAAALANLDI 336 (449)
T ss_pred hhcCCCCCeeeec--ccccccchhhHhHhhhHH--HHHHHhcccCCeeccC---------Cccc-cCHHHHHHHHHHHHH
Confidence 11 2666554 655 23445577888766 22333322 1112222 1221 122222333345555
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCc-ee-EEEEEecCCcchhh---hhhHHHHHHHHHhCCcEEEee
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVR-LG-LVCFRLRSENNLIA---DQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~-~~-iV~Fr~~~~~~~~~---d~ln~~L~~~L~~~G~~~~s~ 727 (891)
+-.+++.+. ..++..+|.++|++ +++...+.+.+ .+ +..+.+........ .....++...+.++|.+. .+
T Consensus 337 ~e~e~l~~~---~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~i-Rp 412 (449)
T COG0161 337 LEEEDLLER---VAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLI-RP 412 (449)
T ss_pred HHhcCHHHH---HHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEE-ee
Confidence 556665554 45788888888887 44333444432 23 33455543321111 234567888888999873 33
Q ss_pred ccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 728 s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
. +. ++ +++-.-+|+++||++++.+.+.++
T Consensus 413 ~---g~-~i~~~PPliit~~eid~l~~~l~~al~ 442 (449)
T COG0161 413 L---GD-VIYLMPPLIITREEIDELVDALREALD 442 (449)
T ss_pred c---CC-EEEEcCCccCCHHHHHHHHHHHHHHHH
Confidence 2 22 44 666566899999999999998875
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.057 Score=62.98 Aligned_cols=68 Identities=13% Similarity=0.349 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----------------c--eeEEEEEecCCcchh
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----------------R--LGLVCFRLRSENNLI 705 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----------------~--~~iV~Fr~~~~~~~~ 705 (891)
....|..++ |...+..++++..++|+++++.|+++|.++-+.-| . .++++|.+++.
T Consensus 274 ~~~a~l~lr--gl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~---- 347 (425)
T PRK06084 274 PFNAFLILQ--GLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGG---- 347 (425)
T ss_pred HHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCC----
Confidence 445565544 88889999999999999999999999987643211 1 35999999743
Q ss_pred hhhhHHHHHHHHH
Q psy852 706 ADQNNRKLLEDIN 718 (891)
Q Consensus 706 ~d~ln~~L~~~L~ 718 (891)
.....++++.|.
T Consensus 348 -~~~~~~f~~~l~ 359 (425)
T PRK06084 348 -QAAGARFIDALK 359 (425)
T ss_pred -HHHHHHHHHhCC
Confidence 122345566654
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.057 Score=62.61 Aligned_cols=251 Identities=6% Similarity=-0.080 Sum_probs=130.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
.|+ +|+|+++++..++.+.- + +.-.|++..-........+...|.+++.+|.|++ +.
T Consensus 108 ~I~--it~Gs~~al~~~~~~~~----~---------------~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~ 166 (410)
T PRK06290 108 EVI--HSIGSKPALAMLPSCFI----N---------------PGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFL 166 (410)
T ss_pred eEE--EccCHHHHHHHHHHHhC----C---------------CCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCc
Confidence 355 67888888766654321 0 1123555555555666677788999999999753 56
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC----------CCCc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG----------IEYA 582 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG----------i~~a 582 (891)
+|+++|++.+.+.. ..++++ +-.|++. |.++ .++ ....
T Consensus 167 ~d~~~l~~~~~~~~----k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~ 242 (410)
T PRK06290 167 PDLDSIPKDIKEKA----KLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEV 242 (410)
T ss_pred CCHHHHHHhhcccc----eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCcccc
Confidence 79999998886421 223333 2355554 2221 011 0011
Q ss_pred cEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh-HH
Q psy852 583 DSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG-LQ 660 (891)
Q Consensus 583 DSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G-~~ 660 (891)
+-+.-+..|.++.|- =+|+++. ++..+.........+ ....+ .+.+.++...+-... ++
T Consensus 243 ~I~i~SfSK~~g~~GlRiG~ii~-~~~l~~~l~~~~~~~--------------~~~~~----~~~q~aa~~~l~~~~~~~ 303 (410)
T PRK06290 243 GVEIHSLSKAYNMTGWRLAFVVG-NELIVKAFATVKDNN--------------DSGQF----IAIQKAGIYALDHPEITE 303 (410)
T ss_pred EEEEeechhhcCCchhheEeEEe-CHHHHHHHHHHHhcc--------------ccCCc----HHHHHHHHHHhhCcHHHH
Confidence 222333455544331 2344332 221111100000000 00000 122223333332222 34
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEE-EEecCCcchhh-hhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVC-FRLRSENNLIA-DQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~-Fr~~~~~~~~~-d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
+..++..+.++++.+.|++. ++.+.. ++.+... .++++...... .....++.+.|.++|.+.+.+....+ ..+ +
T Consensus 304 ~~~~~~~~~~~~l~~~L~~~-g~~~~~-p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~-~~lRi 380 (410)
T PRK06290 304 KIREKYSRRLDKLVKILNEV-GFKAEM-PGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG-HFLRF 380 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCeecC-CCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc-CeEEE
Confidence 45555677788888999886 566543 4445443 46643210000 01356788999888776555433333 345 7
Q ss_pred EecC-CCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQE-RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~-~tT~edId~li~~L~ei~~ 760 (891)
++.. ..++++.++++++|++.++
T Consensus 381 ~~~~~~~~~~~~~~~~~~l~~~~~ 404 (410)
T PRK06290 381 SVTFEAKDEEEEDRILEEIKRRLS 404 (410)
T ss_pred EEEcccccccchhHHHHHHHHHHh
Confidence 7654 6689999999999988775
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.09 Score=60.43 Aligned_cols=243 Identities=8% Similarity=-0.031 Sum_probs=136.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
.|+ +|+|++++...++.+. . .+...|++..-.++.....+...|++++.+|.+++ ..
T Consensus 95 ~I~--it~G~~~al~~~~~~~----~---------------~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 153 (399)
T PRK07681 95 EVL--LLMGSQDGLVHLPMVY----A---------------NPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFL 153 (399)
T ss_pred eEE--ECCCcHHHHHHHHHHh----C---------------CCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCc
Confidence 455 6788888877665432 1 11234666667777788888889999999999754 46
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC--------CCCc-c
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG--------IEYA-D 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG--------i~~a-D 583 (891)
+|+++|++++.+.. ..++++ +-.|++. |.++ .++ +... |
T Consensus 154 ~d~~~l~~~~~~~~----k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (399)
T PRK07681 154 PDLELIPEEIADKA----KMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKE 229 (399)
T ss_pred CCHHHHHHhccccc----eEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcc
Confidence 89999998885421 122333 2345554 3221 011 0101 1
Q ss_pred -EEEE-cCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhh
Q psy852 584 -SFNV-NVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSG 658 (891)
Q Consensus 584 -SIs~-d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G 658 (891)
-|.+ +..|.++.| .=+|+++. +++.+ +.+.....+. .++ .+ .+.++++...+ +..-
T Consensus 230 ~~i~~~S~SK~~~~~GlRiG~~i~-~~~l~-~~~~~~~~~~-----------~~~--~s----~~~q~~~~~~l~~~~~~ 290 (399)
T PRK07681 230 VGVEINSLSKSYSLAGSRIGYMIG-NEEIV-RALTQFKSNT-----------DYG--VF----LPIQKAACAALRNGAAF 290 (399)
T ss_pred cEEEEeecccccCCccceeEEEec-CHHHH-HHHHHHHhhc-----------ccC--CC----HHHHHHHHHHHhCcHHH
Confidence 2433 678877644 44777764 33222 2221100000 000 11 12233333333 2233
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeeccc--cCCeE
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~--~g~~~ 735 (891)
+++..+...+..+++.+.|++. ++++..+.....+.+++++. ....++.+.|.+ .|+.+..+... .+...
T Consensus 291 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~g~f~~~~l~~~------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~ 363 (399)
T PRK07681 291 CEKNRGIYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIPKG------WTSLSFAYALMDRANVVVTPGHAFGPHGEGF 363 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeeEEEEECCCC------CCHHHHHHHHHHhCCEEEeCChhhCcCCCCe
Confidence 4444555567778888888876 67765554555666666431 134577778776 78875554432 22345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei 758 (891)
+ +++. .+.++++++++.|++.
T Consensus 364 iRis~~--~~~~~~~~~l~~l~~~ 385 (399)
T PRK07681 364 VRIALV--QDEEVLQQAVENIRNS 385 (399)
T ss_pred EEEEec--CCHHHHHHHHHHHHHh
Confidence 6 8876 3689999999888874
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.04 Score=63.74 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=96.5
Q ss_pred EEEecccchHHH----HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------h
Q psy852 508 MAYCSKEAHSCV----EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv----~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c 572 (891)
.|+++...|... ...+...|++++.++.+ |+++|+++|++.++ .+++ ++..|... |
T Consensus 106 ~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~tk----lV~le~p~NPtG~~~di~~I~~la 176 (403)
T PRK07503 106 EVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISDKTR----MVYFETPANPNMRLVDIAAVAEIA 176 (403)
T ss_pred EEEEccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCccCc----EEEEeCCCCCCCeeeCHHHHHHHH
Confidence 355565555432 23344568888888774 78999998875321 2222 23344443 3
Q ss_pred hhh-----hcCC-----------CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----SQGI-----------EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----ldGi-----------~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ +|.. -.+|-+..|.+||+++|-+ .|+++ .+++.... +... .... ..
T Consensus 177 ~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~-~~~~l~~~-l~~~--~~~~---------~~ 243 (403)
T PRK07503 177 HGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVV-GGKALADR-IRLE--GLKD---------MT 243 (403)
T ss_pred HHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEE-cCHHHHHH-HHhh--hHHh---------Cc
Confidence 331 2221 2579999999999998765 66665 54433222 1100 0000 00
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr 697 (891)
+-+...+..|..++ |.+-+..++++..++++.+.+.|+++|.++.+.-| .-++++|.
T Consensus 244 ----g~~~s~~~a~l~l~--~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~ 317 (403)
T PRK07503 244 ----GAVMSPFDAFLLMR--GLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFE 317 (403)
T ss_pred ----CCCCCHHHHHHHHc--CcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEE
Confidence 11223445565554 56777788888999999999999998887643211 13589999
Q ss_pred ecC
Q psy852 698 LRS 700 (891)
Q Consensus 698 ~~~ 700 (891)
+++
T Consensus 318 ~~~ 320 (403)
T PRK07503 318 LKG 320 (403)
T ss_pred ECC
Confidence 864
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.023 Score=66.86 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=104.3
Q ss_pred EEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c 572 (891)
.|+++...|.+..+.+ ...|++++.++. .|+++|+++|++.+ ..+++. +..|... |
T Consensus 173 ~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~-----~d~e~l~~ai~~~T----klV~lesPsNPtG~i~Dl~~I~~lA 243 (464)
T PLN02509 173 EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-----TNLDEVAAAIGPQT----KLVWLESPTNPRQQISDIRKIAEMA 243 (464)
T ss_pred EEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC-----CCHHHHHHhCCcCC----eEEEEECCCCCCCCHHHHHHHHHHH
Confidence 4677777887766443 345777777764 36788888876432 122221 2233332 3
Q ss_pred hhh-----hcC-----------CCCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----SQG-----------IEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----ldG-----------i~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ +|. -.++|.+.+++|||+++|-+ .|+++++++..... +. .++..
T Consensus 244 k~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~-~~----~~~~~---------- 308 (464)
T PLN02509 244 HAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE-VY----FLQNS---------- 308 (464)
T ss_pred HHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHH-HH----HHHHh----------
Confidence 221 111 13589999999999999877 77777766532211 10 00000
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-C-----C-----------ceeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-D-----V-----------RLGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~-----~-----------~~~iV~Fr 697 (891)
.+..+.....|..++ |.+-+..++++..++|+++.+.|+++|.++-+. | | -.++++|.
T Consensus 309 ---~g~~l~p~~A~l~lr--~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~ 383 (464)
T PLN02509 309 ---EGSGLAPFDCWLCLR--GIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFI 383 (464)
T ss_pred ---cCCCcCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEE
Confidence 011123344565554 666778899999999999999999999885332 1 1 13699998
Q ss_pred ecCCcchhhhhhHHHHHHHHH
Q psy852 698 LRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 698 ~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+ +. .....++++.|.
T Consensus 384 ~-~~-----~~~~~~f~~~l~ 398 (464)
T PLN02509 384 T-GS-----VALSKHLVETTK 398 (464)
T ss_pred e-CC-----HHHHHHHHHcCC
Confidence 8 32 223345555554
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.031 Score=65.21 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=56.8
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++.-........+ ...|.+++.++ + + .|+++|++.+.+..+.. .+-+|.+..-+|.+|.+-|+++|.++
T Consensus 125 Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~-~--~-~d~~~l~~~l~~~~~~~-~tklv~lesP~NPtg~v~d~~~l~~l 199 (427)
T PRK07049 125 ILHSQPLYGGTETLLAKTFRNFGVGAVGFA-D--G-LSEAAIGAAAEAAAAKG-RVSLILIETPANPTNSLVDVAAVRRV 199 (427)
T ss_pred EEEcCCCcccHHHHHHHHHHhcCcEEEEEe-C--C-CCHHHHHHHHHhhccCC-CceEEEEECCCCCCCcccCHHHHHHH
Confidence 556555544443332 23466665554 2 2 57888888886543222 24577777899999999999999999
Q ss_pred HHH------cCCceeeeccc
Q psy852 221 AKE------FDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~------~~~~lHvDaA~ 234 (891)
+++ +++++.+|-+|
T Consensus 200 a~~~~~~~~~~~~vvvDety 219 (427)
T PRK07049 200 ADAIEARQGHRPIIACDNTL 219 (427)
T ss_pred HHHhhhcccCCCEEEEECCc
Confidence 988 66777777776
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.012 Score=68.10 Aligned_cols=87 Identities=10% Similarity=0.011 Sum_probs=66.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-++......+...|.+++.|+.|++ +.+|+++|++.+.+. +-+|+++--+|.||.+-+ +++|++
T Consensus 133 Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~v~s~e~l~~l~~ 206 (410)
T PRK06290 133 TLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEK------AKLLYLNYPNNPTGAVATKEFYEEVVD 206 (410)
T ss_pred EEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhccc------ceEEEEECCCCCCCcCCCHHHHHHHHH
Confidence 555555555555666667789999999864 567999999887543 346666667999999988 467778
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|++++++|.+|-+|+.+
T Consensus 207 la~~~~~~iI~DEaY~~~ 224 (410)
T PRK06290 207 FAKENNIIVVQDAAYAAL 224 (410)
T ss_pred HHHHcCeEEEEecchhhc
Confidence 899999999999999643
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.013 Score=66.51 Aligned_cols=88 Identities=15% Similarity=-0.028 Sum_probs=68.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-+......++...+.+++.++.++++.+|+++|++++.+.. +-+|+++--+|.||.+-+.+++.++++.+
T Consensus 115 v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~~~i~l~~p~NPtG~~~~~~~l~~l~~~~ 189 (368)
T PRK03317 115 ALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHR-----PDVVFLTSPNNPTGTALPLDDVEAILDAA 189 (368)
T ss_pred EEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHHC
Confidence 5554455555555666677788888877778999999999887432 22445566789999999999999999999
Q ss_pred CCceeeeccccCC
Q psy852 225 DVWLHVDGAYAGS 237 (891)
Q Consensus 225 ~~~lHvDaA~GG~ 237 (891)
++++.+|-+|+++
T Consensus 190 ~~~lI~DE~y~~~ 202 (368)
T PRK03317 190 PGIVVVDEAYAEF 202 (368)
T ss_pred CceEEEeCCchhh
Confidence 9999999999764
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.036 Score=63.66 Aligned_cols=247 Identities=10% Similarity=0.031 Sum_probs=130.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-CCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G~m 541 (891)
+|+ ++.|+++++..++.+. .. +.-.|+++.-.+.....++...|++++.+|++++ +.+
T Consensus 98 ~i~--~t~G~~~al~~~~~~l----~~---------------~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 156 (394)
T PRK06836 98 HIV--MTCGAAGALNVALKAI----LN---------------PGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQP 156 (394)
T ss_pred cEE--EeCChHHHHHHHHHHh----cC---------------CCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcC
Confidence 455 6778888877666543 10 1124667777777777777778899999999876 789
Q ss_pred CHHHHHHHHHhhhhcCCccEEE---EecCCccc-----------hhh------h-----hc---------C--CC----C
Q psy852 542 RGATLRQVMQQDETMGYIPFFV---STTLGTTS-----------CYR------K-----SQ---------G--IE----Y 581 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~V---vataGTT~-----------c~~------~-----ld---------G--i~----~ 581 (891)
|+++|++++++.++ -+++ ++..|++. |.+ | .| + .. .
T Consensus 157 d~~~l~~~~~~~~~----~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 232 (394)
T PRK06836 157 DLDALEAAITPKTK----AVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKY 232 (394)
T ss_pred CHHHHHhhcCcCce----EEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHc
Confidence 99999999965322 1222 23356653 433 1 01 1 00 0
Q ss_pred --ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 582 --ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 582 --aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
-.-+..+..|.++.| ..+|+++..+.......+...-.+... ...+ .. ...+.++...+.+.. +
T Consensus 233 ~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~----~~~~~q~~~~~~l~~-~ 299 (394)
T PRK06836 233 YDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANR-------ILGF-VN----APALMQRVVAKCLDA-T 299 (394)
T ss_pred cCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhh-------cccc-cc----CCHHHHHHHHHHhCC-h
Confidence 012334577766644 456776654321000000000000000 0000 00 011222222222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
. ..+...+..+.+.+.|++. ++++..+.....++.+++.. ...++.+.|.+.|+.+..+........+ +
T Consensus 300 ~--~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~-------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi 369 (394)
T PRK06836 300 V--DVSIYKRNRDLLYDGLTEL-GFECVKPQGAFYLFPKSPEE-------DDVAFCEKAKKHNLLLVPGSGFGCPGYFRL 369 (394)
T ss_pred H--HHHHHHHHHHHHHHHHHhC-CCEeecCCceEEEEEeCCCC-------CHHHHHHHHHhCCEEEECchhcCCCCeEEE
Confidence 1 1233445567777788776 56665443333444454321 2356778888889876554433333456 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~ 759 (891)
+++ .++++++..++.|++++
T Consensus 370 ~~~--~~~~~~~~~i~~l~~~l 389 (394)
T PRK06836 370 SYC--VDTETIERSLPAFEKLA 389 (394)
T ss_pred Eec--CCHHHHHHHHHHHHHHH
Confidence 876 47889999888888776
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.064 Score=61.73 Aligned_cols=255 Identities=13% Similarity=0.028 Sum_probs=135.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +++|+++++..++.+. .+ +.-.|+++.-+|.....++...|.+++.+++|. ++.
T Consensus 97 ~i~--~t~G~~~~l~~~~~~~----~~---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~ 155 (404)
T PRK09265 97 DIY--IGNGVSELIVMAMQAL----LN---------------NGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWF 155 (404)
T ss_pred cEE--EeCChHHHHHHHHHHh----CC---------------CCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCC
Confidence 455 6788888876665442 10 122477788888888888887888888888764 467
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC---------CCcc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI---------EYAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi---------~~aD 583 (891)
+|+++|++++++..+ .++++ +-.|++. |.++ .++. +...
T Consensus 156 ~d~~~l~~~~~~~~~----~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 231 (404)
T PRK09265 156 PDLDDIRSKITPRTK----AIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLL 231 (404)
T ss_pred CCHHHHHHhccccce----EEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCce
Confidence 999999998864321 12222 2345543 2221 1110 1112
Q ss_pred EEEEc-CcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-hhHH
Q psy852 584 SFNVN-VNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SGLQ 660 (891)
Q Consensus 584 SIs~d-~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G~~ 660 (891)
.|.+. ..|.++.| .=+|+++......+.+.+......+.. ..++ ...+.++++...++. +.+.
T Consensus 232 vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~--------~~~~------~~~~~q~~~~~~l~~~~~~~ 297 (404)
T PRK09265 232 CVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLAS--------MRLC------ANVPAQHAIQTALGGYQSIN 297 (404)
T ss_pred EEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHHhc--------cccC------CCcHHHHHHHHHhcCchhHH
Confidence 34433 47877655 336777653221111100000000000 0000 112333444444431 1222
Q ss_pred HHH---HHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc--cCCeE
Q psy852 661 KYI---RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 661 ~~i---~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~--~g~~~ 735 (891)
+.+ ++..+.++.+.+.|++.+++++..+.....++.++++... ......+.+...|.+.|+.+.-+... .+...
T Consensus 298 ~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~ 376 (404)
T PRK09265 298 ELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVY-PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDH 376 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEeccccc-CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCe
Confidence 222 3556667888888888777776544344455556653200 00112345667778889875544433 23345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ +++. .+.++++..++.|++.+
T Consensus 377 ~Ri~~~--~~~e~l~~~l~rl~~~l 399 (404)
T PRK09265 377 FRIVTL--PRVDDLEEAIGRIGRFL 399 (404)
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHH
Confidence 6 7774 67899999998888765
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.09 Score=59.21 Aligned_cols=68 Identities=19% Similarity=0.119 Sum_probs=54.2
Q ss_pred HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 156 EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 156 ~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
...+...|.+++.+++|+++.+|+++++ +. +-+++++..+|.||.+-|.++|.++|++ +.++.+|.+|
T Consensus 110 ~~~~~~~G~~i~~v~~~~~~~~d~~~l~----~~------~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y 177 (349)
T PRK07908 110 EAALRAAGIPVHRVVLDPPFRLDPAAVP----DD------ADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAF 177 (349)
T ss_pred HHHHHHcCCEEEeeccCcccCcChhHhc----cC------CCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcc
Confidence 3444567889999999988889998653 21 2366668889999999999999999965 7788889998
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0039 Score=70.93 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=69.2
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH-
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE- 223 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~- 223 (891)
|++..-++......+...|.+++.|+.++++.+|+++|++.+++.. -+|+++..+|.||.+-|.+++.++++.
T Consensus 115 vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~l~~~~ 188 (371)
T PRK05166 115 VVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAP------RMLMFSNPSNPVGSWLTADQLARVLDAT 188 (371)
T ss_pred EEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCC------CEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 6666667766767777778899999999889999999999886543 366678889999999998888877764
Q ss_pred -cCCceeeeccccC
Q psy852 224 -FDVWLHVDGAYAG 236 (891)
Q Consensus 224 -~~~~lHvDaA~GG 236 (891)
.++++.+|.+|+-
T Consensus 189 ~~~~~ii~De~y~~ 202 (371)
T PRK05166 189 PPETLIVVDEAYAE 202 (371)
T ss_pred CCCcEEEEECcHHH
Confidence 3788999999943
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.19 Score=58.93 Aligned_cols=152 Identities=9% Similarity=0.041 Sum_probs=85.1
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|-++++ |.++.-++.|+++.+++. ...+ .... ..|.. +-+........+|+.+.. +
T Consensus 283 pDivt~~--K~l~~G~p~gav~~~~~i--~~~~---~~~~-----------~~T~~-g~p~~~aaa~a~L~~l~~----~ 339 (441)
T PRK05769 283 PDIITLA--KAIAGGLPLGAVIGRAEL--MFLP---PGSH-----------ANTFG-GNPVAAAAALATLEELEE----G 339 (441)
T ss_pred CCEEEEc--ccccCCcccEEEEEehhh--hhcC---CCCC-----------CCCCC-cCHHHHHHHHHHHHHHHH----H
Confidence 4777764 777766778888887652 1111 0000 11111 122222333344444433 4
Q ss_pred HHHHHHHHHHHHHHHhccCC-CcEEeCCCc--eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 662 YIRRHCELAKLFEGKVRRDP-RFEISNDVR--LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~-~~eil~~~~--~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
.+++..++.++|.+.|+++. .+.++.+.. -.++.+.+.....+........+.+.+.+.|++.. + .+...+ +
T Consensus 340 ~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~-~---~~~~~lr~ 415 (441)
T PRK05769 340 LLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLL-G---AGKSAIRI 415 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEe-c---CCCCEEEE
Confidence 56677778888888886531 122222221 23455555322111112345678888889998742 2 234566 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~~ 760 (891)
++...+|++|||++++.+++.+.
T Consensus 416 ~p~l~~t~~~id~~~~~l~~~l~ 438 (441)
T PRK05769 416 IPPLIITEEEADIGLEILEEAIK 438 (441)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHH
Confidence 88888899999999999998763
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.045 Score=62.42 Aligned_cols=162 Identities=19% Similarity=0.196 Sum_probs=94.7
Q ss_pred EEecccchHH----HHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hh
Q psy852 509 AYCSKEAHSC----VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CY 573 (891)
Q Consensus 509 I~~S~~aH~S----v~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~ 573 (891)
|+++...+.+ ....+...|++++.++. .|+++|+++|++.++ .+++.. -.|+.. |+
T Consensus 93 Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~-----~d~~~l~~~i~~~tk----lv~le~P~NP~~~~~dl~~I~~la~ 163 (366)
T PRK08247 93 LIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT-----ASLKAIEQAITPNTK----AIFIETPTNPLMQETDIAAIAKIAK 163 (366)
T ss_pred EEEecCCcCcHHHHHHHHhhccCceEEEECC-----CCHHHHHHhcccCce----EEEEECCCCCCCcHHHHHHHHHHHH
Confidence 4455444433 23334456778887775 388888888865321 222221 122221 22
Q ss_pred hh-----hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 574 RK-----SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 574 ~~-----ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
++ +|. + .++|-+..+++|+++++-+ .|+++.+++.........+ .+.
T Consensus 164 ~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~-~~~-------------- 228 (366)
T PRK08247 164 KHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQ-NAA-------------- 228 (366)
T ss_pred HcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHH-Hhc--------------
Confidence 21 111 1 3589999999999998755 5665554443222111000 000
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-ceeEEEEEec
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-RLGLVCFRLR 699 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~~iV~Fr~~ 699 (891)
+-....+..|..++ |.+.+..++++..++++.+.+.|+++|++..+..| ..++++|.+.
T Consensus 229 ---g~~~s~~~a~l~~~--~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 229 ---GAVLSPFDSWLLIR--GMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred ---CCCCChHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEEC
Confidence 00112234566655 55677788888899999999999999998754444 7889999885
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.004 Score=70.37 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=68.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++.-++......+...|.+++.|+.++++.+|+++|++.+. . +-+|+++-.+|.||.+-+.+++.++++.
T Consensus 101 ~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~-~------~~lv~l~nPnNPTG~~~~~~~l~~l~~~ 173 (351)
T PRK01688 101 AILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNLD-G------VKVVYVCSPNNPTGNLINPQDLRTLLEL 173 (351)
T ss_pred EEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhcc-C------CcEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 36667777777777777788899999998889999999998773 2 2367777899999999998888887764
Q ss_pred c--CCceeeecccc
Q psy852 224 F--DVWLHVDGAYA 235 (891)
Q Consensus 224 ~--~~~lHvDaA~G 235 (891)
. +.+|++|-||.
T Consensus 174 ~~~~~~vivDEay~ 187 (351)
T PRK01688 174 TRGKAIVVADEAYI 187 (351)
T ss_pred CCCCcEEEEECchh
Confidence 3 57899999993
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.03 Score=64.66 Aligned_cols=200 Identities=13% Similarity=0.175 Sum_probs=113.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH----HHHHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV----EKAAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv----~Kaa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|+.++..++.+. .+ +.-.|+++...|.+. ...+...|++++.++.+ |+
T Consensus 84 ~~~sG~~Ai~~al~~l----l~---------------~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~ 139 (400)
T PRK06234 84 VAASGMGAISSSLWSA----LK---------------AGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NL 139 (400)
T ss_pred EEcCHHHHHHHHHHHH----hC---------------CCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC-----CH
Confidence 4667788876665432 11 112356666655443 33445678888888763 78
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-------hcC----------C-CCccEEEEcCcccCC
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-------SQG----------I-EYADSFNVNVNKWLL 594 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-------ldG----------i-~~aDSIs~d~HK~L~ 594 (891)
++|+++|++.++ .+++. +..|... |+++ +|. + ..+|-+..+++|+++
T Consensus 140 e~l~~~i~~~tk----lI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~ 215 (400)
T PRK06234 140 EEVRNALKANTK----VVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLN 215 (400)
T ss_pred HHHHHHhccCCe----EEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeecccccc
Confidence 888888865321 22221 2234432 3321 111 0 258999999999999
Q ss_pred cccc--cEEEEEeCCccchhhhccC-CCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy852 595 TAFD--SSCLWVADRYKLTSALVVD-PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAK 671 (891)
Q Consensus 595 ~P~g--~G~llvR~~~~L~~~l~~~-~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~ 671 (891)
+|-. .|+++.+++ .. +.+... ..+. + +-...++..|..++ |.+.+..++++..++++
T Consensus 216 g~g~~~gG~v~~~~~-~~-~~l~~~~~~~~------------~----g~~l~p~~a~l~~~--~l~tl~~r~~~~~~na~ 275 (400)
T PRK06234 216 GHGDVIAGFVVGKEE-FI-NQVKLFGIKDM------------T----GSVIGPFEAFLIIR--GMKTLQIRMEKHCKNAM 275 (400)
T ss_pred CCCCceeEEEEecHH-HH-HHHHHHHHHHh------------c----CCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHH
Confidence 8764 477666543 22 222100 0000 0 11223344455544 56667788899999999
Q ss_pred HHHHHhccCCCcEEeCC------C-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHhC
Q psy852 672 LFEGKVRRDPRFEISND------V-----------RLGLVCFRLRSENNLIADQNNRKLLEDINAS 720 (891)
Q Consensus 672 ~L~~~L~~~~~~eil~~------~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~ 720 (891)
++.+.|++.|.+.-+.- | ..++++|.+++. .....++.+.|..-
T Consensus 276 ~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~-----~~~~~~f~~~l~~~ 336 (400)
T PRK06234 276 KVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG-----VEEGKVVMNNVKLA 336 (400)
T ss_pred HHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc-----HHHHHHHHHhCCcc
Confidence 99999999887753321 1 136999999743 12335666666543
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.13 Score=59.16 Aligned_cols=236 Identities=10% Similarity=0.004 Sum_probs=123.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~mD~~~ 545 (891)
+|.|+++++..++.+. .. +.-.|+++.-.+.....++...|++++.+|.|.+ +.+|+++
T Consensus 102 vt~G~~~al~~~~~~~----~~---------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 162 (394)
T PRK05942 102 PLLGSKEGLTHLALAY----VN---------------PGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSS 162 (394)
T ss_pred EccChHHHHHHHHHHh----CC---------------CCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHH
Confidence 5678888887765442 11 1224777777777777777778899999998743 4799999
Q ss_pred HHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----h---------cC--------CC---CccEEE
Q psy852 546 LRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----S---------QG--------IE---YADSFN 586 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----l---------dG--------i~---~aDSIs 586 (891)
|++.+.+.+ ..++++ +-.|++. |.++ . ++ +. ...-..
T Consensus 163 l~~~~~~~~----k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (394)
T PRK05942 163 IPEEVAQQA----KILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEF 238 (394)
T ss_pred HHHhccccc----eEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEE
Confidence 999886422 233333 3456654 3221 0 11 11 111113
Q ss_pred EcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHHHHH
Q psy852 587 VNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQKYI 663 (891)
Q Consensus 587 ~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~~~i 663 (891)
-+..|.++ ...-+|+++... +.+ +.+.....+. .++. ..+.+.++...+. .+.+++..
T Consensus 239 ~SfSK~~~~~GlRiG~i~~~~-~l~-~~l~~~~~~~-----------~~~~------~~~~q~~~~~~l~~~~~~~~~~~ 299 (394)
T PRK05942 239 HTLSKTYNMAGWRVGFVVGNR-HII-QGLRTLKTNL-----------DYGI------FSALQKAAETALQLPDSYLQQVQ 299 (394)
T ss_pred ecchhccCChhhheeeeecCH-HHH-HHHHHHHhhc-----------ccCC------CHHHHHHHHHHHhCcHHHHHHHH
Confidence 45668664 335578887533 222 2221100000 0000 0112222222232 33445555
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHH-HHhCCcEEEeeccc--cCCeEE-EE
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLED-INASGRLHMVPASQ--EQNDEV-FE 738 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~-L~~~G~~~~s~s~~--~g~~~l-~s 738 (891)
++..+..+++.+.|+.. ++.+.. ++.+ .+++++++. ....++..+ |.+.|+.+..+... .+...+ ++
T Consensus 300 ~~~~~~~~~~~~~L~~~-~~~~~~-~~~~~f~~~~~~~~------~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis 371 (394)
T PRK05942 300 ERYRTRRDFLIQGLGEL-GWNIPP-TKATMYLWVPCPVG------MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRIS 371 (394)
T ss_pred HHHHHHHHHHHHHHHHC-CCeecC-CCeeeEEEEECCCC------CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEE
Confidence 55667778888888775 566554 4455 566666432 123345554 45688875544432 234466 88
Q ss_pred ecCCCCHHHHHHHHHHHHHH
Q psy852 739 LQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ei 758 (891)
+.. . .+.+.+.|+++
T Consensus 372 ~~~--~---~~~l~~~l~~l 386 (394)
T PRK05942 372 LIA--D---CDRLGEALDRL 386 (394)
T ss_pred ecC--C---HHHHHHHHHHH
Confidence 752 3 34455555544
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.028 Score=63.58 Aligned_cols=84 Identities=10% Similarity=0.070 Sum_probs=60.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-.......++...+.+++.++.+++ ..+| +++.+.+... +-+|+++.-+|.||.+-+ +.+|++
T Consensus 96 v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~l~~ 168 (354)
T PRK06358 96 VLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEE------IDLVFLCNPNNPTGQLISKEEMKKILD 168 (354)
T ss_pred EEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccC------CCEEEEeCCCCCCCCccCHHHHHHHHH
Confidence 444444444455555667889999998754 3688 5655555322 345666777999999976 778888
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++++++.+|.+|.
T Consensus 169 ~a~~~~~~ii~De~Y~ 184 (354)
T PRK06358 169 KCEKRNIYLIIDEAFM 184 (354)
T ss_pred HHHhcCCEEEEeCccc
Confidence 8999999999999994
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.071 Score=60.99 Aligned_cols=243 Identities=9% Similarity=0.035 Sum_probs=129.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~m 541 (891)
+++ +++|+++++..++.+. .. +.-.|+++.-.|......+...|.+++.+|.++ ++.+
T Consensus 92 ~i~--it~g~~~al~~~~~~l----~~---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 150 (384)
T PRK12414 92 EVT--VIASASEGLYAAISAL----VH---------------PGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRV 150 (384)
T ss_pred cEE--EECChHHHHHHHHHHh----cC---------------CCCEEEEeCCCccchHHHHHHcCCEEEEEecCcccccc
Confidence 455 6788888877665442 10 112366677778777777788889999999874 5789
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC--------CC-c--
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI--------EY-A-- 582 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi--------~~-a-- 582 (891)
|++.|++++++.. ..++++ +-.|++. |.++ .++- .. .
T Consensus 151 d~~~l~~~l~~~~----~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~ 226 (384)
T PRK12414 151 NWDEVAAAITPRT----RMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAER 226 (384)
T ss_pred CHHHHHhhcCccc----EEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCc
Confidence 9999999886421 122332 3456643 2221 1110 00 0
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-hhHH
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SGLQ 660 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G~~ 660 (891)
--..-+..|.++.| .-+|+++...+ +.+.+..-..+ .......+.+++....+.. ..+.
T Consensus 227 ~i~~~SfSK~~~~pGlRiG~~v~~~~--l~~~l~~~~~~-----------------~~~~~s~~~q~a~~~~l~~~~~~~ 287 (384)
T PRK12414 227 SVIVSSFGKSYHVTGWRVGYCLAPAE--LMDEIRKVHQF-----------------MVFSADTPMQHAFAEALAEPASYL 287 (384)
T ss_pred EEEEecccccccCccceEEEEecCHH--HHHHHHHHHhh-----------------eecCCCcHHHHHHHHHhcCChHHH
Confidence 12333466766544 33566655332 11111100000 0011122344444444422 2233
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEE-EEEecCCcchhhhhhHHHHH-HHHHhCCcEEEeeccc--cC--Ce
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLV-CFRLRSENNLIADQNNRKLL-EDINASGRLHMVPASQ--EQ--ND 734 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV-~Fr~~~~~~~~~d~ln~~L~-~~L~~~G~~~~s~s~~--~g--~~ 734 (891)
+..+...+.++++.+.|++. ++++. ++..+.. +.++.+.. +....++. ..|.+.|+.+.-+... .+ ..
T Consensus 288 ~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~gg~~~~~~~~~~~----~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~ 361 (384)
T PRK12414 288 GLGAFYQRKRDLLARELAGS-RFELL-PSEGSFFMLARFRHFS----DESDSDFVLRLIRDARVATIPLSAFYTDGTDTG 361 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCeec-CCCcceEEEEcccccC----CCCHHHHHHHHHHhCCEEEecchhhcCCCCCCC
Confidence 44455567778888888876 56654 3444443 33664310 11233444 5566789876655433 12 34
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~e 757 (891)
.+ +++.. +++++++.++.|.+
T Consensus 362 ~iRis~~~--~~~~~~~~~~rl~~ 383 (384)
T PRK12414 362 LIRLSFSK--DDATLVEGARRLCS 383 (384)
T ss_pred EEEEEecC--CHHHHHHHHHHHhh
Confidence 56 88774 57888888876653
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.27 Score=58.07 Aligned_cols=154 Identities=8% Similarity=0.019 Sum_probs=89.6
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
-|-+++ -|.++.= +++|+++.+++ +.+.+... .+. ...|+. +-+..+....++|+.+-.++
T Consensus 293 PDivt~--gK~lggG~~Pigav~~~~~--i~~~~~~~-~~~----------~~~T~~-gnp~~~Aaala~L~~i~~~~-- 354 (459)
T PRK11522 293 PDILCL--AKALGGGVMPIGATIATEE--VFSVLFDN-PFL----------HTTTFG-GNPLACAAALATINVLLEQN-- 354 (459)
T ss_pred CCEEEe--chhhhCCCccceeEEEcHH--HHHHhccC-Ccc----------cCCCCC-CCHHHHHHHHHHHHHHhcch--
Confidence 576654 7888754 46788988754 22222111 111 011111 12333334445566555544
Q ss_pred HHHHHHHHHHHHHHHHhccCC-CcE-EeCCC--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 661 KYIRRHCELAKLFEGKVRRDP-RFE-ISNDV--RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~-~~e-il~~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
..++..++.++|.+.|+++. .+. ++.+. .-.++.+.+... .....+.+.|.+.|++.. ++ ..+..++
T Consensus 355 -l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~------~~~~~i~~~l~~~Gvl~~-~~-~~~~~~l 425 (459)
T PRK11522 355 -LPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN------EIGYNFASEMFRQRVLVA-GT-LNNAKTI 425 (459)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc------hHHHHHHHHHHHCCeEEE-ec-CCCCCEE
Confidence 45667778888888887641 222 22221 234566666432 345678888989997742 22 2234566
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
+.+....|++|||.+++.|++.+..+
T Consensus 426 r~~Ppl~~t~~~id~~l~~l~~~l~~~ 452 (459)
T PRK11522 426 RIEPPLTLTIEQCEQVLKAARKALAAM 452 (459)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999887533
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.071 Score=60.96 Aligned_cols=243 Identities=8% Similarity=0.039 Sum_probs=128.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
+|+ +|+|+++++..++.+.-. +...|++..-.+.....++...|.+++.+|.+ +++.
T Consensus 91 ~i~--it~G~~~al~~~~~~~~~-------------------~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 149 (384)
T PRK06348 91 EIM--ATVGACHGMYLALQSILD-------------------PGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQ 149 (384)
T ss_pred hEE--EcCChHHHHHHHHHHhcC-------------------CCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCc
Confidence 455 688999988777665311 11246777777777788888888898999874 3457
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCCCCcc------------------
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGIEYAD------------------ 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi~~aD------------------ 583 (891)
+|+++|++++++.. ..++++ +-.|.+. |.++ .|.+ +.|
T Consensus 150 ~d~~~l~~~~~~~~----~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~-y~~~~~~~~~~~~~~~~~~~~ 224 (384)
T PRK06348 150 INVKKLEALITSKT----KAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEV-YDGFSFYEDFVPMATLAGMPE 224 (384)
T ss_pred CCHHHHHHhhCcCc----cEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecc-cccceeCCCccchhhcCCCcC
Confidence 99999999886432 123333 2244443 2221 0110 011
Q ss_pred -EEE-EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-hh-
Q psy852 584 -SFN-VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SG- 658 (891)
Q Consensus 584 -SIs-~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G- 658 (891)
.|. -+..|.++.| .-+|+++..+. +...+.....+ ..++ ...+.+.++...+.. +.
T Consensus 225 ~vi~~~SfSK~~~l~GlRiG~~v~~~~--~~~~~~~~~~~-----------~~~~------~~~~~q~~~~~~l~~~~~~ 285 (384)
T PRK06348 225 RTITFGSFSKDFAMTGWRIGYVIAPDY--IIETAKIINEG-----------ICFS------APTISQRAAIYALKHRDTI 285 (384)
T ss_pred cEEEEecchhccCCccccceeeecCHH--HHHHHHHHHHh-----------ccCC------CCHHHHHHHHHHHhCcHHH
Confidence 122 2455555433 33454444221 11111100000 0000 112333333333322 22
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCe
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQND 734 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~ 734 (891)
+++..+...+.++++.+.|+..+++++. +++.+ .++++++.. .....++.+.|. +.|+.+.-++.. .+..
T Consensus 286 ~~~~~~~~~~r~~~~~~~L~~~~~~~~~-~p~gg~~~~~~~~~~-----~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~ 359 (384)
T PRK06348 286 VPLIKEEFQKRLEYAYKRIESIPNLSLH-PPKGSIYAFINIKKT-----GLSSVEFCEKLLKEAHVLVIPGKAFGESGEG 359 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceec-cCCeeEEEEEecccC-----CCCHHHHHHHHHHhCCEEEcCchhhccCCCC
Confidence 3334444456678888888887776654 44444 345566421 113456777775 568875544432 2234
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.+ +++. .+.++++..++.|+++
T Consensus 360 ~iRi~~~--~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 360 YIRLACT--VGIEVLEEAFNRIEKM 382 (384)
T ss_pred eEEEEec--CCHHHHHHHHHHHHhh
Confidence 56 8875 4788888888877654
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.14 Score=58.30 Aligned_cols=238 Identities=7% Similarity=-0.028 Sum_probs=126.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~mD~~~ 545 (891)
+|.|+++++..++... . .+...|++..-.......++...|.+++.+|.+++ ..+|+++
T Consensus 96 ~t~G~~~~l~~~~~~~----~---------------~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~ 156 (383)
T TIGR03540 96 SLIGSKEGIAHIPLAF----V---------------NPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDA 156 (383)
T ss_pred ECCCcHHHHHHHHHHh----C---------------CCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHH
Confidence 5678888777655431 1 11234666666677777777888999999998643 5689999
Q ss_pred HHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC--------CC---CccEEE
Q psy852 546 LRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG--------IE---YADSFN 586 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG--------i~---~aDSIs 586 (891)
|++.+.+.. ..++++ +-.|++. |.++ .++ +. ...-..
T Consensus 157 l~~~~~~~~----~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~ 232 (383)
T TIGR03540 157 IPEDIAKKA----KLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEF 232 (383)
T ss_pred HHhhccccc----eEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEE
Confidence 999886422 233333 2345544 3221 011 00 111223
Q ss_pred EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhHHHHH
Q psy852 587 VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGLQKYI 663 (891)
Q Consensus 587 ~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~~~~i 663 (891)
-+..|.++.| .=+|+++. +++.+.........+ . .+. + .+.+......+ +..-+++..
T Consensus 233 ~SfSK~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~-~-----------~~~--~----~~~q~~~~~~l~~~~~~~~~~~ 293 (383)
T TIGR03540 233 HSLSKTYNMTGWRIGMAVG-NADLIAGLGKVKTNV-D-----------SGV--F----QAIQYAAIAALNGPQDVVKEIR 293 (383)
T ss_pred EecccccCCccceeeEEeC-CHHHHHHHHHHHHhc-c-----------cCC--C----hHHHHHHHHHHhCCHHHHHHHH
Confidence 4566877644 22676654 332222111111000 0 000 0 11111222222 223344555
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCeEE-EEe
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQNDEV-FEL 739 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~~l-~sv 739 (891)
+...+.++.+.+.|++. ++.+..+.....+++++++. ....++.+.|. +.|+.+..++.. .+...+ +++
T Consensus 294 ~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~ 366 (383)
T TIGR03540 294 KIYQRRRDLLLEALKKI-GIDVEKPKATFYVWVPVPEG------YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL 366 (383)
T ss_pred HHHHHHHHHHHHHHHhC-CCEecCCCcceEEEEECCCC------CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEe
Confidence 56677888888999886 67766443333466666421 13467788765 578876544432 223456 887
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFV 756 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ 756 (891)
+ .+++++++.++.|.
T Consensus 367 ~--~~~~~l~~~l~~l~ 381 (383)
T TIGR03540 367 T--VPDERLEEAVARIK 381 (383)
T ss_pred c--CCHHHHHHHHHHHh
Confidence 6 35667776666554
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.19 Score=59.51 Aligned_cols=151 Identities=14% Similarity=0.112 Sum_probs=79.2
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-+++ .|.+++. +++|+++.+++ .+ ..+. +. .+ ..|+. +-+......-++|+.+-..++
T Consensus 286 pDiv~l--sK~lggG~~pigav~~~~~-i~-~~~~--~~--~~---------~~T~~-g~pl~~aaa~aaLe~l~~~~l- 346 (474)
T PLN02624 286 PDVVIL--GKALGGGVIPVSAVLADKD-VM-LCIK--PG--EH---------GSTFG-GNPLASAVAMAALQVVQDEKL- 346 (474)
T ss_pred CCEEEe--cccccCCCCcceeeeecHH-HH-hHhc--cC--Cc---------CCCCC-CCHHHHHHHHHHHHHHHhchH-
Confidence 577777 4988877 57888887643 11 1111 00 00 01111 112222222233343333333
Q ss_pred HHHHHHHHHHHHHHHHhccC----CC-cEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeE
Q psy852 661 KYIRRHCELAKLFEGKVRRD----PR-FEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDE 735 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~----~~-~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~ 735 (891)
.++..++.++|.+.|+++ +. +.-+. ..-.++.+.+..... -+.....+.+.|.+.|++. .+. +..+
T Consensus 347 --~~~~~~~~~~l~~~L~~l~~~~~~~i~~vr-g~G~~~~i~l~~~~~--~~~~a~~~~~~L~e~GV~v-~p~---~~~~ 417 (474)
T PLN02624 347 --AERSAKLGQELRDQLQKIQKQFPKLIKEVR-GRGLLNAVVLNSPKL--GPVSAYDVCLKLKERGLLA-KPT---HDTI 417 (474)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCCCceEEEE-eeEEEEEEEecCCCc--ChHHHHHHHHHHHhCCeEE-ecC---CCCE
Confidence 334455566666666542 32 21111 222344444432110 0124567888898899774 332 3456
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ |+++..+|++|||++++.|++.+.
T Consensus 418 lR~~p~l~~t~e~id~~l~~L~~~l~ 443 (474)
T PLN02624 418 IRLAPPLSISEDELQECSKALSDVLE 443 (474)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHH
Confidence 7 988888999999999999987763
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0058 Score=68.95 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=68.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH-
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE- 223 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~- 223 (891)
|++..-+......++...|.+++.++++ ++.+|+++|++.+.+. +.+|+++..+|.||.+-|.++|.++++.
T Consensus 108 v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~l~~~~~~~ 180 (359)
T PRK03158 108 TVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHDLEAMLKAIDEQ------TKIVWICNPNNPTGTYVNHEELLSFLESV 180 (359)
T ss_pred EEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 6666666666666666778899999998 6789999999877543 2355667789999999999999999987
Q ss_pred -cCCceeeeccccCC
Q psy852 224 -FDVWLHVDGAYAGS 237 (891)
Q Consensus 224 -~~~~lHvDaA~GG~ 237 (891)
+++++.+|-+|+.+
T Consensus 181 ~~~~~ii~De~y~~~ 195 (359)
T PRK03158 181 PSHVLVVLDEAYYEY 195 (359)
T ss_pred CCCcEEEEECchHhh
Confidence 58999999999543
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.072 Score=60.90 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=128.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +|.|+++++..++.+. .+ +.-.|+++.-+|.+....+...+.+++.+|++.+ +.
T Consensus 94 ~i~--it~G~~~al~~~~~~~----~~---------------~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 152 (387)
T PRK08960 94 RIL--VTPGGSGALLLASSLL----VD---------------PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQ 152 (387)
T ss_pred hEE--EccCcHHHHHHHHHHh----cC---------------CCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCC
Confidence 566 7889999887766442 11 1235788888898888888888889999998754 47
Q ss_pred cCHHHHHHHHHhhhhcCCccEEE---EecCCccc-----------hhhh-----hcCC--------------C-CccEE-
Q psy852 541 LRGATLRQVMQQDETMGYIPFFV---STTLGTTS-----------CYRK-----SQGI--------------E-YADSF- 585 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~-----------c~~~-----ldGi--------------~-~aDSI- 585 (891)
+|+++|++++++.+. -+++ .+-.|++. |.++ +|.+ . .-+.|
T Consensus 153 ~d~~~l~~~~~~~~~----~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~ 228 (387)
T PRK08960 153 LTPALVERHWNADTV----GALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFV 228 (387)
T ss_pred CCHHHHHHHhCccce----EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEE
Confidence 999999998875321 1222 23456654 3221 1110 0 01222
Q ss_pred EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH---HhhHHH
Q psy852 586 NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG---LSGLQK 661 (891)
Q Consensus 586 s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG---~~G~~~ 661 (891)
.-+.+|.++.| .-+|+++..++ .+.........+ +...+ .+.+.++...+. ..-+.+
T Consensus 229 ~~S~SK~~g~~GlRiG~~~~~~~-~~~~~~~~~~~~--------------~~~~s----~~~q~a~~~~l~~~~~~~l~~ 289 (387)
T PRK08960 229 LNSFSKYFGMTGWRLGWLVAPPA-AVPELEKLAQNL--------------YISAS----TPAQHAALACFEPETLAILEA 289 (387)
T ss_pred EeecccccCCcccEEEEEEcCHH-HHHHHHHHHhhh--------------ccCCC----HHHHHHHHHHhhcCcHHHHHH
Confidence 34577866534 23777766432 221110000000 01111 122222333331 122333
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCCC-ceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc---CCeEE
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISNDV-RLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE---QNDEV 736 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~---g~~~l 736 (891)
..+...+..+.+.+.|++. ++.+...| ....+.+++++. .....++.+.|. +.|+.+..++... ....+
T Consensus 290 ~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~~-----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~i 363 (387)
T PRK08960 290 RRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYADISAF-----GGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHV 363 (387)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEecccc-----CCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeE
Confidence 3444556677788888775 45543333 334445555421 113467777765 5788755443332 22356
Q ss_pred -EEecCCCCHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei 758 (891)
+++.. +.+.++..++.|.+.
T Consensus 364 Ri~~~~--~~~~l~~al~~l~~~ 384 (387)
T PRK08960 364 RFAYTQ--SLPRLQEAVERIARG 384 (387)
T ss_pred EEEecC--CHHHHHHHHHHHHHH
Confidence 88774 456666666555543
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.14 Score=61.26 Aligned_cols=253 Identities=11% Similarity=0.057 Sum_probs=138.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +++|+++++..++.+. .+ +.-.|+++.-.++....++.+.|++++.+++++ ++.
T Consensus 210 ~I~--it~G~~eal~~~~~~l----~~---------------~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~ 268 (517)
T PRK13355 210 DIY--TGNGVSELINLSMSAL----LD---------------DGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWY 268 (517)
T ss_pred HEE--EeCcHHHHHHHHHHHh----CC---------------CCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCC
Confidence 566 7789999887776542 11 112466666777777777888899999998865 468
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC---------CCcc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI---------EYAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi---------~~aD 583 (891)
+|+++|++++.+.+ ..++++ +-.|++. |.+| .++. ...-
T Consensus 269 ~d~~~l~~~~~~~~----k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~ 344 (517)
T PRK13355 269 PDIDDIRSKITSRT----KAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLF 344 (517)
T ss_pred CCHHHHHHhcCcCc----eEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCe
Confidence 99999999886532 223333 2356554 3221 1221 1111
Q ss_pred EEEE-cCcccCCcc-cccEEEEEe-CCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-hhH
Q psy852 584 SFNV-NVNKWLLTA-FDSSCLWVA-DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SGL 659 (891)
Q Consensus 584 SIs~-d~HK~L~~P-~g~G~llvR-~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G~ 659 (891)
.|++ ++.|.++.| .=+|++++. +.+.+...... ...+. .... ....+.++++...+.. ..+
T Consensus 345 vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~-l~~~~----------~~~~----~~~~~~q~a~~~aL~~~~~~ 409 (517)
T PRK13355 345 CVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEG-LNMLA----------NMRL----CSNVPAQSIVQTALGGHQSV 409 (517)
T ss_pred EEEEecchhhccCcccceEEEEeeCchhhHHHHHHH-HHHHh----------cCcC----CcChHHHHHHHHHhcCCccH
Confidence 2333 467876555 337777653 22211110000 00000 0000 1223445555555532 112
Q ss_pred HHH---HHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEE-EecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc--CC
Q psy852 660 QKY---IRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF-RLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--QN 733 (891)
Q Consensus 660 ~~~---i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~F-r~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--g~ 733 (891)
.+. .++..+.++++.+.|++++++++. +|+.+...| ++.+... ......+.+...|.+.|+.++-++... +.
T Consensus 410 ~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~g~fy~~~~l~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~ 487 (517)
T PRK13355 410 KDYLVPGGRVYEQRELVYNALNAIPGISAV-KPKAAFYIFPKIDVKKF-NIHDDEQFALDLLHDKKVLIVQGTGFNWDKP 487 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccC-CCCeeeEEEeecCcccC-CCCCHHHHHHHHHHhCCEEEeCcchhCCCCc
Confidence 222 234566678899999988888765 455565555 5542100 000112334455677898866555442 34
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+ +++. .++++++..++.|.+.+
T Consensus 488 ~~~Ris~~--~~~~~l~~a~~rl~~~~ 512 (517)
T PRK13355 488 DHFRVVYL--PRLEDLEDAMDRLADFF 512 (517)
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHHHH
Confidence 456 8773 67888888888887765
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.094 Score=59.14 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHcCCeEEEEec---CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHH
Q psy852 150 EAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKE 223 (891)
Q Consensus 150 ~~H~Sv~kaa~~~~~~v~~V~~---d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~ 223 (891)
-.-+.+.++....+-+++..|. |....||.++||+.+.+.. +.+.+..--.|.+|.+ +.|.+|+++|++
T Consensus 115 PvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~-----vkl~iLCnPHNP~Grvwt~eeL~~i~elc~k 189 (388)
T COG1168 115 PVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER-----VKLFILCNPHNPTGRVWTKEELRKIAELCLR 189 (388)
T ss_pred CCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC-----ccEEEEeCCCCCCCccccHHHHHHHHHHHHH
Confidence 3455677777666778888775 4455679999999998763 2366667788999988 889999999999
Q ss_pred cCCce-----eeeccccC
Q psy852 224 FDVWL-----HVDGAYAG 236 (891)
Q Consensus 224 ~~~~l-----HvDaA~GG 236 (891)
||+.| |.|-.++|
T Consensus 190 h~v~VISDEIHaDlv~~g 207 (388)
T COG1168 190 HGVRVISDEIHADLVLGG 207 (388)
T ss_pred cCCEEEeecccccccccC
Confidence 99874 66666654
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.47 Score=56.17 Aligned_cols=256 Identities=10% Similarity=-0.017 Sum_probs=137.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +|+|+++++..++.+.-. + +.-.|++..-.++.....+.+.|.+++.+|++++ +.
T Consensus 140 ~I~--it~Ga~~al~~~~~~l~~---~---------------~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~ 199 (481)
T PTZ00377 140 DIF--LTDGASSGIKLLLQLLIG---D---------------PSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWS 199 (481)
T ss_pred hEE--EcCCHHHHHHHHHHHhcc---C---------------CCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCC
Confidence 566 789999998887765310 0 1224777777888888888889999999998743 58
Q ss_pred cCHHHHHHHHHhhhhcC-Cc-cEEEE---ecCCccc-----------hhhh--------------hc-CCC---------
Q psy852 541 LRGATLRQVMQQDETMG-YI-PFFVS---TTLGTTS-----------CYRK--------------SQ-GIE--------- 580 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g-~i-p~~Vv---ataGTT~-----------c~~~--------------ld-Gi~--------- 580 (891)
+|+++|++++.+....+ .+ .++++ +-.|++. |.++ .+ +..
T Consensus 200 ~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~ 279 (481)
T PTZ00377 200 LDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLL 279 (481)
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHH
Confidence 99999999997643322 12 23333 2356654 3221 11 100
Q ss_pred Cc--------cEEEE-cCcccC-Ccc-cccEEEEEe--CCccchhhhccCCCccccCCCCCccccCCcccccccccchHH
Q psy852 581 YA--------DSFNV-NVNKWL-LTA-FDSSCLWVA--DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647 (891)
Q Consensus 581 ~a--------DSIs~-d~HK~L-~~P-~g~G~llvR--~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l 647 (891)
.. .-|++ +..|.+ +.| .=+|++++- +++.+.........++ ....+.+
T Consensus 280 ~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~-------------------~~~~~~Q 340 (481)
T PTZ00377 280 ELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINL-------------------CSNVVGQ 340 (481)
T ss_pred hhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheec-------------------CCChHHH
Confidence 00 12333 577853 322 447777652 3322221111110000 0112334
Q ss_pred HHHHHHHH-----H---hhHHHHH----HHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEec-CCc-chh-----hhh
Q psy852 648 WFVIRTYG-----L---SGLQKYI----RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLR-SEN-NLI-----ADQ 708 (891)
Q Consensus 648 W~~L~~lG-----~---~G~~~~i----~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~-~~~-~~~-----~d~ 708 (891)
+++...+. . +.+.+.+ ++..+.++.+.+.|++++++++..+....-++.++. +.. ... .+
T Consensus 341 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~- 419 (481)
T PTZ00377 341 LMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLA- 419 (481)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCC-
Confidence 44444331 1 1122222 233566778888998888888764333233333442 110 000 00
Q ss_pred hHHHH-HHHHHhCCcEEEeecccc---CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 709 NNRKL-LEDINASGRLHMVPASQE---QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 709 ln~~L-~~~L~~~G~~~~s~s~~~---g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
....+ ...|.+.|+.++-++... +...+ +++. ++++++++.++.|.+...
T Consensus 420 ~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~ 474 (481)
T PTZ00377 420 PDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMVKKIKEFHE 474 (481)
T ss_pred cHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 01223 355567798866555442 23456 8886 678899999999987764
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0073 Score=69.11 Aligned_cols=85 Identities=11% Similarity=0.003 Sum_probs=66.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|+++.-+.......+...|.+++.++.++++.+|+++|++.+.... +-+|+++..+|.||.+-|.+++.++++..
T Consensus 130 Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~-----~~~v~l~~P~NPTG~~~~~~~l~~l~~~~ 204 (380)
T PLN03026 130 IIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHK-----PKLLFLTSPNNPDGSIISDDDLLKILELP 204 (380)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccC-----CcEEEEeCCCCCCCCCCCHHHHHHHHhcC
Confidence 5555545444444556678899999998889999999999884221 34666678999999999999999999764
Q ss_pred CCceeeecccc
Q psy852 225 DVWLHVDGAYA 235 (891)
Q Consensus 225 ~~~lHvDaA~G 235 (891)
+++++|-||.
T Consensus 205 -~~vi~DeaY~ 214 (380)
T PLN03026 205 -ILVVLDEAYI 214 (380)
T ss_pred -CEEEEECcch
Confidence 8999999994
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.036 Score=63.82 Aligned_cols=265 Identities=14% Similarity=0.101 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchH----H
Q psy852 443 RRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHS----C 518 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~----S 518 (891)
+.++++|+.+.+++...+.++ ++++||||++.|+..||..-.++ .+|-+.-.-|= .
T Consensus 93 e~Ei~~Aell~~~~p~~e~vr----fvnSGTEAtmsAiRlARa~TgR~----------------kIikF~G~YHG~~D~~ 152 (432)
T COG0001 93 ELEVELAELLIERVPSIEKVR----FVNSGTEATMSAIRLARAYTGRD----------------KIIKFEGCYHGHSDSL 152 (432)
T ss_pred HHHHHHHHHHHHhcCcccEEE----EecchhHHHHHHHHHHHHhhCCC----------------eEEEEcCCCCCCccHH
Confidence 567888888888887665554 55689999999999999854321 12223323332 2
Q ss_pred HHHHH----HH-----cCc------eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE-----ecCCccc-------
Q psy852 519 VEKAA----MM-----AFV------RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS-----TTLGTTS------- 571 (891)
Q Consensus 519 v~Kaa----~l-----~gv------~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv-----ataGTT~------- 571 (891)
+.++. .+ .|+ .++.+|-+ |+++|++++++. |.-+..|+ .+.|...
T Consensus 153 lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~---g~~IAaVIvEPv~gn~g~i~p~~~Fl~ 224 (432)
T COG0001 153 LVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEY---GDDIAAVIVEPVAGNMGVVPPEPGFLE 224 (432)
T ss_pred HhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHc---CCcEEEEEeccccCCCCCCCCCHHHHH
Confidence 22221 01 111 23444543 688888888774 22233333 2334422
Q ss_pred -----hhhh----------------hcCCCC-----ccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccC
Q psy852 572 -----CYRK----------------SQGIEY-----ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHG 624 (891)
Q Consensus 572 -----c~~~----------------ldGi~~-----aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~ 624 (891)
|+++ +-|.+. .|-. ..-|.+++=+++|++--|.+ +.+.+. ..+-|.
T Consensus 225 ~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlt--tlGKiIGGGlP~ga~gGr~e--iM~~~~p~g~vyq--- 297 (432)
T COG0001 225 GLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLT--TLGKIIGGGLPIGAFGGRAE--IMEQLAPLGPVYQ--- 297 (432)
T ss_pred HHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchh--hhhhhhcCCcceeeeccHHH--HHhhhCCCCCccc---
Confidence 3331 122222 3443 35788888888899877765 222221 111221
Q ss_pred CCCCccccCCcccccccccchHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccC---CCcEEeCCCceeEEEEEecC
Q psy852 625 HEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SGLQKYIRRHCELAKLFEGKVRRD---PRFEISNDVRLGLVCFRLRS 700 (891)
Q Consensus 625 ~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G~~~~i~~~~~lA~~L~~~L~~~---~~~eil~~~~~~iV~Fr~~~ 700 (891)
.-|+.+ -+....+-.++|+.+-. ++ ..++..+++++|.+.|++. -++.+.....-+.++|.|.+
T Consensus 298 --------aGT~sg-nplamaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~ 365 (432)
T COG0001 298 --------AGTLSG-NPLAMAAGLATLEELMTEEG---VYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTE 365 (432)
T ss_pred --------cCCCCC-cHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecC
Confidence 111111 11111222344444443 23 3455566666666666552 23433222234567777765
Q ss_pred Ccc--------hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 701 ENN--------LIADQNNRKLLEDINASGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 701 ~~~--------~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
... .+.+ .-.++...|.++|++ +.++..+. .| ++...|++|||++++++++..+
T Consensus 366 ~~~~n~~da~~sd~~-~~~~~~~~~l~~GV~-l~ps~~ea---~f-lS~ahte~di~~~~~a~~~~~~ 427 (432)
T COG0001 366 EGVRNYADAKRSDVE-RFAKFFHHLLNRGVY-LAPSQFEA---GF-LSTAHTEEDIDRTLEAADEAFK 427 (432)
T ss_pred CCCCCHHHHHhhchH-HHHHHHHHHHhCCcc-cCCccccc---ee-eecccCHHHHHHHHHHHHHHHH
Confidence 321 1222 234566688888976 44433221 11 3445699999999999997764
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.1 Score=59.61 Aligned_cols=238 Identities=7% Similarity=-0.051 Sum_probs=124.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~mD~~~ 545 (891)
+|.|+++++..++.+. .+ +...|++..-..+....++...|.+++.+|.+. ...+|+++
T Consensus 98 ~t~G~~~~i~~~~~~~----~~---------------~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~ 158 (385)
T PRK09276 98 SLIGSKEGIAHIPLAF----VN---------------PGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDA 158 (385)
T ss_pred EccCcHHHHHHHHHHh----CC---------------CCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHH
Confidence 5678888877665442 10 122466666666666777788899999999864 35689999
Q ss_pred HHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----h---------cC--------CCC---ccEEE
Q psy852 546 LRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----S---------QG--------IEY---ADSFN 586 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----l---------dG--------i~~---aDSIs 586 (891)
+++.+.+.. ..++++ +-.|++. |.++ + ++ +.. ..-..
T Consensus 159 l~~~~~~~~----~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 234 (385)
T PRK09276 159 IPEDVAKKA----KLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEF 234 (385)
T ss_pred HHHhccccc----eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEE
Confidence 988876421 233333 3355554 2221 0 11 000 01123
Q ss_pred EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHHHHH
Q psy852 587 VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQKYI 663 (891)
Q Consensus 587 ~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~~~i 663 (891)
-+..|.++.| .=+|+++. +++.+ +.+.....++. .....+.+..+...+. ..-+++..
T Consensus 235 ~S~SK~~g~~GlRiG~~i~-~~~l~-~~~~~~~~~~~-----------------~~~~~~~q~~~~~~l~~~~~~~~~~~ 295 (385)
T PRK09276 235 HSLSKTYNMTGWRIGFAVG-NADLI-AGLGKVKSNVD-----------------SGVFQAIQEAGIAALNGPQEVVEELR 295 (385)
T ss_pred ecchhhcCCcchhheeeeC-CHHHH-HHHHHHHhhcc-----------------CCCCHHHHHHHHHHHcCcHHHHHHHH
Confidence 4566766544 22566653 22222 21110000000 0001122223333332 23345555
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc--CCeEE-EEe
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE--QNDEV-FEL 739 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~--g~~~l-~sv 739 (891)
+...+.++++.+.|++. ++++..+.....+++++++. ....++.+.|. +.|+.+..+.... +...+ +++
T Consensus 296 ~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~v~~~~~------~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~ 368 (385)
T PRK09276 296 KIYQERRDILVEGLRKL-GLEVEPPKATFYVWAPVPKG------YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL 368 (385)
T ss_pred HHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEECCCC------CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe
Confidence 55677788898999886 67665433333356666431 23467777775 5788755544332 23456 887
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFV 756 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ 756 (891)
. .+++++++.++.|.
T Consensus 369 ~--~~~~~l~~~l~~l~ 383 (385)
T PRK09276 369 T--VPDERIEEAVERIK 383 (385)
T ss_pred C--CCHHHHHHHHHHHh
Confidence 6 35677776666554
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.17 Score=57.97 Aligned_cols=237 Identities=7% Similarity=-0.011 Sum_probs=126.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~mD~~~ 545 (891)
+|.|+++++..++.+. . .+...|++..-++.....++...|++++.+|.++ +..+|+++
T Consensus 99 it~G~~~~l~~~~~~~----~---------------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~ 159 (389)
T PRK08068 99 ILFGGKAGLVELPQCL----M---------------NPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTK 159 (389)
T ss_pred EcCCcHHHHHHHHHHh----C---------------CCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHH
Confidence 5778888776544331 1 1123477777777777788888899999999975 35789999
Q ss_pred HHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC------CCCc-----cEEE
Q psy852 546 LRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG------IEYA-----DSFN 586 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG------i~~a-----DSIs 586 (891)
|++.+.+. ...++++ +-.|++. |.++ .++ +... .-+.
T Consensus 160 l~~~~~~~----~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~ 235 (389)
T PRK08068 160 IPEEVAEK----AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIEL 235 (389)
T ss_pred HHHhcccc----ceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEE
Confidence 99988642 1233333 3456654 3221 111 0000 1122
Q ss_pred EcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhHHHH
Q psy852 587 VNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGLQKY 662 (891)
Q Consensus 587 ~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~~~~ 662 (891)
-+..|.++.| .=+|+++. +++.+ +.+. ....| .. + ..+..+.++...+ +..-+++.
T Consensus 236 ~S~SK~~g~~GlRiG~~~~-~~~l~-~~l~~~~~~~--------------~~--~--~~~~~q~~~~~~l~~~~~~~~~~ 295 (389)
T PRK08068 236 YTLSKTFNMAGWRVAFAVG-NESVI-EAINLLQDHL--------------FV--S--LFGAIQDAAIEALLSDQSCVAEL 295 (389)
T ss_pred ecchhccCCccceeEeEec-CHHHH-HHHHHHHhhc--------------cC--C--CChHHHHHHHHHHhCcHHHHHHH
Confidence 3556665433 23555543 22211 1111 00000 00 0 0011122222222 23445666
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeecc--ccCCeEE-E
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPAS--QEQNDEV-F 737 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~--~~g~~~l-~ 737 (891)
.+...+.++++.+.|++. ++.+. ++..+ .+++++.+. ....++.+.|.+ .|+.+.-+.. ..+...+ +
T Consensus 296 ~~~~~~~r~~~~~~L~~~-g~~~~-~~~g~~~~~v~~~~~------~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi 367 (389)
T PRK08068 296 VARYESRRNAFISACREI-GWEVD-APKGSFFAWMPVPKG------YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRV 367 (389)
T ss_pred HHHHHHHHHHHHHHHHHC-CCccc-CCCeeEEEEEECCCC------CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEE
Confidence 677777888888888876 56544 44444 466777532 134678888876 5887554432 2234456 8
Q ss_pred EecCCCCHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~e 757 (891)
+++. .++.++..++.|.+
T Consensus 368 ~~~~--~~~~l~~al~~l~~ 385 (389)
T PRK08068 368 GLLT--DEERLREAVERIGK 385 (389)
T ss_pred EEcC--CHHHHHHHHHHHHH
Confidence 8853 45666666655544
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.054 Score=62.73 Aligned_cols=185 Identities=11% Similarity=0.124 Sum_probs=107.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH----HHHHHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC----VEKAAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S----v~Kaa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
.+++|+.++..++.+. .+ +.-.|+++...|.. ..+.+...|++++.++.+ |+
T Consensus 90 ~~~sG~~Ai~~~l~al----l~---------------~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-----d~ 145 (403)
T PRK07810 90 ATASGMSAVFTALGAL----LG---------------AGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE-----DL 145 (403)
T ss_pred EECChHHHHHHHHHHH----hC---------------CCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC-----CH
Confidence 4567777777655442 11 11236666655522 233344567888887653 88
Q ss_pred HHHHHHHHhhhhcCCccEEE---EecCCccc--------hhhh-----hc----------CC-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYRK-----SQ----------GI-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~~-----ld----------Gi-~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.++ .+++ .+-.|... |+++ +| ++ -++|-+..++|||++++
T Consensus 146 ~~l~~ai~~~tk----lV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~ 221 (403)
T PRK07810 146 SQWEEALSVPTQ----AVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQ 221 (403)
T ss_pred HHHHHhcCcCce----EEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCC
Confidence 888888876422 1222 12233322 3321 11 11 25899999999999876
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|+++.++. .+...+. .+++. .+.....+-.|..++ |.+-+..++++..+++.+++
T Consensus 222 g~~~gG~v~~~~~-~~~~~l~---~~~~~--------------~g~~~s~~~a~l~l~--~L~tl~~R~~~~~~~a~~~a 281 (403)
T PRK07810 222 GRVLGGAILGDRE-YIDGPVQ---KLMRH--------------TGPALSAFNAWVLLK--GLETLALRVRHSNASALRIA 281 (403)
T ss_pred cCceeEEEEeChH-HHHHHHH---HHHHH--------------hCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHH
Confidence 54 466665443 3321111 01110 011234456666554 77788999999999999999
Q ss_pred HHhccCCCcEEeC-C-----C-----------ceeEEEEEecC
Q psy852 675 GKVRRDPRFEISN-D-----V-----------RLGLVCFRLRS 700 (891)
Q Consensus 675 ~~L~~~~~~eil~-~-----~-----------~~~iV~Fr~~~ 700 (891)
+.|++.|.++-+. | | ..++++|.+.+
T Consensus 282 ~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 282 EFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred HHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 9999999876432 1 2 13699999964
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.13 Score=59.28 Aligned_cols=258 Identities=10% Similarity=0.028 Sum_probs=134.4
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +|+|+++++..++.+... +.-.|++..-.+......+...|++++.+|.+.++. +
T Consensus 94 ~I~--it~G~~~al~~~~~~l~~-------------------~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~ 151 (405)
T PRK09148 94 QVV--ATLGSKEGFANMAQAITA-------------------PGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-F 151 (405)
T ss_pred cEE--EcCChHHHHHHHHHHhcC-------------------CCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-C
Confidence 455 788999988776654311 112366666666666667777899999999876543 3
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC--------CCCc-c--
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG--------IEYA-D-- 583 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG--------i~~a-D-- 583 (891)
+++|+++++....+ ..-++++ +-.|++. |.++ .++ +... +
T Consensus 152 ~~~l~~~~~~~~~~-~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~ 230 (405)
T PRK09148 152 FPALERAVRHSIPK-PIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVT 230 (405)
T ss_pred ccCHHHHHhhcccc-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcE
Confidence 55666666543221 1222222 3456654 2221 011 0100 1
Q ss_pred EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHH
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQ 660 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~ 660 (891)
-..-+..|.++.| .=+|+++. ++..+. .+.....++ .++ ...+.+.++...+. ..-++
T Consensus 231 i~~~SfSK~~~~pGlR~G~~v~-~~~~i~-~l~~~~~~~-----------~~~------~~~~~q~~~~~~L~~~~~~~~ 291 (405)
T PRK09148 231 VEFTSMSKTFSMAGWRMGFAVG-NERLIA-ALTRVKSYL-----------DYG------AFTPIQVAATAALNGPQDCIA 291 (405)
T ss_pred EEEeccccccCCcchheeeeeC-CHHHHH-HHHHHHHHh-----------ccC------CChHHHHHHHHHHhCcHHHHH
Confidence 1234566766645 33566653 222221 111000010 000 01223333444442 22344
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCeEE-
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQNDEV- 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~~l- 736 (891)
+..+...+..+++.+.|++. ++.+..+....-+++++++... +....++.+.|. +.|+.+.-+... .+...+
T Consensus 292 ~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~l~~~~~---~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~R 367 (405)
T PRK09148 292 EMRELYKKRRDVLVESFGRA-GWDIPPPAASMFAWAPIPEAFR---HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVR 367 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccCCCCeeEEEEEECCCccC---CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEE
Confidence 44555677777888888875 5554433333456666643200 011346767665 578876554432 223456
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHhhhc
Q psy852 737 FELQERKRKDDLAYKRSFFVRMLGLVCFRLRS 768 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~~~~~~~l~~ 768 (891)
+++. .+.+.+++.++.|.+++....|++-+
T Consensus 368 i~~~--~~~~~l~~al~~l~~~l~~~~~~~~~ 397 (405)
T PRK09148 368 IALV--ENEQRIRQAARNIKRFLSSADETLHN 397 (405)
T ss_pred EEec--CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8775 46788888888888888766666644
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.036 Score=62.10 Aligned_cols=182 Identities=15% Similarity=0.238 Sum_probs=102.9
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhh-------------------------cCCccEEEEecCCccc-hhhhh
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDET-------------------------MGYIPFFVSTTLGTTS-CYRKS 576 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~-------------------------~g~ip~~VvataGTT~-c~~~l 576 (891)
..-+|++++.|..+ |++.++++|+++++ +..+|++|.+|.+|.. |+-.-
T Consensus 122 l~~~Gi~v~fvd~~-----d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~ 196 (426)
T COG2873 122 LKRLGIEVRFVDPD-----DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIE 196 (426)
T ss_pred HHhcCcEEEEeCCC-----CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecchhh
Confidence 34567777777654 36666666655432 1345677777777754 22111
Q ss_pred cCCCCccEEEEcCcccCCccc-ccEEEEEeCCc-------cchhhhccCCCccccCCCCCccccCCc----cccccccc-
Q psy852 577 QGIEYADSFNVNVNKWLLTAF-DSSCLWVADRY-------KLTSALVVDPLYLQHGHEGAIDYRHWG----IPLSRRFR- 643 (891)
Q Consensus 577 dGi~~aDSIs~d~HK~L~~P~-g~G~llvR~~~-------~L~~~l~~~~~Yl~~~~e~~~~~~~~t----i~~SRr~~- 643 (891)
-+||-+.=|.-||+++.- ..|.+++-... .....-..++.|..-.....+....+. .++-|-+.
T Consensus 197 ---hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa 273 (426)
T COG2873 197 ---HGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGA 273 (426)
T ss_pred ---cCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhccc
Confidence 258999999999998763 34555554321 111111133444321111100000011 11222211
Q ss_pred ---chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC------------------ceeEEEEEecCCc
Q psy852 644 ---SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV------------------RLGLVCFRLRSEN 702 (891)
Q Consensus 644 ---aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~------------------~~~iV~Fr~~~~~ 702 (891)
+...|..+ .|.+-+.-++++++++|..+++.|+++|.+.-++-| .-+|++|.+++.
T Consensus 274 ~lsPfnAfl~l--qGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg- 350 (426)
T COG2873 274 TLSPFNAFLLL--QGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGG- 350 (426)
T ss_pred ccCcHHHHHHH--hchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecCh-
Confidence 24455554 488888999999999999999999999988776522 126889999865
Q ss_pred chhhhhhHHHHHHHHHh
Q psy852 703 NLIADQNNRKLLEDINA 719 (891)
Q Consensus 703 ~~~~d~ln~~L~~~L~~ 719 (891)
.+..+++.+.|..
T Consensus 351 ----~ea~~~fi~~l~L 363 (426)
T COG2873 351 ----YEAGKKFIDALKL 363 (426)
T ss_pred ----HHHHHHHHHHHHH
Confidence 2334455555543
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.078 Score=60.51 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=84.7
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
-|=+++ -|.|++=++.|+++.++. .. ..+. .+. .+-|+. +.+......-++++.+-.++
T Consensus 246 PDI~tl--aK~LgGG~PigA~la~~~-~~-~~~~-------~G~------HgSTfG-GNpLacAv~~a~l~~l~~e~--- 304 (404)
T COG4992 246 PDILTL--AKALGGGFPIGAMLATEE-IA-SAFT-------PGD------HGSTFG-GNPLACAVALAVLEVLLEEG--- 304 (404)
T ss_pred CCEEEe--eccccCCccceeeEEchh-hh-hcCC-------CCc------ccCCCC-cCHHHHHHHHHHHHHHcchh---
Confidence 365554 577777788999999832 11 1111 000 011111 12222222233444455554
Q ss_pred HHHHHHHHHHHHHHHhccC-CCcEEeCCCc-e-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 662 YIRRHCELAKLFEGKVRRD-PRFEISNDVR-L-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~-~~~eil~~~~-~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
.+++..+..++|.++|+++ ..+.++.+.+ . -++-..+.+. .....+...+.+.|++.. .-+..++ |
T Consensus 305 ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~------~~a~~~~~~~~~~gvL~~----~a~~~ViR~ 374 (404)
T COG4992 305 LLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEP------YRARDIVRALREEGVLVL----PAGPNVIRF 374 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCc------ccHHHHHHHHHHCCeEEe----cCCCCeEEe
Confidence 4455566777788877764 2233333322 2 2445555432 135688899999997732 2233467 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+..-++++|||..++.|++.+.
T Consensus 375 ~PpL~i~~eei~~~~~~l~~~l~ 397 (404)
T COG4992 375 LPPLVITEEEIDEALDALERALA 397 (404)
T ss_pred cCCccCCHHHHHHHHHHHHHHHH
Confidence 88888999999999999998874
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.13 Score=59.01 Aligned_cols=253 Identities=12% Similarity=0.020 Sum_probs=135.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
.|+ +++|+++++..++.+... +.-.|+++.-........+...|.+++.+|.+ .++.
T Consensus 97 ~i~--~t~G~~~al~~~~~~l~~-------------------~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~ 155 (401)
T TIGR01264 97 DVV--LCSGCSHAIEMCIAALAN-------------------AGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWE 155 (401)
T ss_pred HEE--ECcChHHHHHHHHHHhCC-------------------CCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCC
Confidence 355 688999988777654311 11135555555556667777888999888875 3578
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC---------CCcc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI---------EYAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi---------~~aD 583 (891)
+|+++|++++++.. ..++++ +-.|++. |.++ .++- ....
T Consensus 156 ~d~~~l~~~~~~~~----~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 231 (401)
T TIGR01264 156 IDLKQLESLIDEKT----AALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVP 231 (401)
T ss_pred CCHHHHHHHhccCc----eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCc
Confidence 99999999886532 122222 2355553 2221 1120 0001
Q ss_pred E-EEEcCcccCCcc-cccEEEEEeCCc-cchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH---Hh
Q psy852 584 S-FNVNVNKWLLTA-FDSSCLWVADRY-KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG---LS 657 (891)
Q Consensus 584 S-Is~d~HK~L~~P-~g~G~llvR~~~-~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG---~~ 657 (891)
- +.-+..|.++.| .-+|+++..+.. .+...+..-... .. ..++ ...+.+.++...+- ..
T Consensus 232 vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~-~~--------~~~~------~~~~~q~a~~~~l~~~~~~ 296 (401)
T TIGR01264 232 ILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKL-SQ--------RILG------PCTIVQGALPSILLRTPQE 296 (401)
T ss_pred EEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHH-hh--------ccCC------CCcHHHHHHHHHHHhCcHH
Confidence 2 244577854434 457777765421 111111000000 00 0000 01233333333332 23
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc-chhhhhhHHHHHHHHH-hCCcEEEeeccccCCeE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN-NLIADQNNRKLLEDIN-ASGRLHMVPASQEQNDE 735 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~-~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g~~~ 735 (891)
-+++..+...+..+++.+.|++.+++.+..+...+-+.++++... +. .....++.+.|. +.|+.+..+........
T Consensus 297 ~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~--~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~ 374 (401)
T TIGR01264 297 YFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPE--FKNDVEFTERLVAEQSVFCLPGSCFEYPGF 374 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccCC--CCCHHHHHHHHHHhCCEEEeCchhcCCCCe
Confidence 455566666777888999998887766554545566666664210 00 012456777775 67987655444433445
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ ++++. .+++++..++.|.+.+
T Consensus 375 iRis~~~--~~~~l~~~l~rl~~~~ 397 (401)
T TIGR01264 375 FRVVLTV--PVVMMEEACSRIQEFC 397 (401)
T ss_pred EEEEEcC--CHHHHHHHHHHHHHHH
Confidence 6 88864 4788888888877654
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.14 Score=59.08 Aligned_cols=251 Identities=7% Similarity=0.000 Sum_probs=135.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +|+|+++++..++.+.- . +.-.|++++-.|.....++.+.|++++.+|+++ ++.
T Consensus 98 ~i~--~t~G~~~al~~~~~~l~----~---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~ 156 (409)
T PLN02656 98 DVF--ITSGCTQAIDVALSMLA----R---------------PGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWE 156 (409)
T ss_pred cEE--EeCChHHHHHHHHHHHh----C---------------CCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCC
Confidence 555 78899998877665531 1 112477777778777777778899999999853 468
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCCC-----Ccc----
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGIE-----YAD---- 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi~-----~aD---- 583 (891)
+|+++|++++++.+ .-++++ +-.|++. |.++ .++-. ..|
T Consensus 157 ~d~~~l~~~~~~~~----~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 232 (409)
T PLN02656 157 VDLDAVEALADQNT----VALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVP 232 (409)
T ss_pred CCHHHHHHHhccCc----eEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCc
Confidence 99999999886532 112222 2345542 2221 11100 001
Q ss_pred EE-EEcCcccCCcc-cccEEEEEeCCc------cchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH
Q psy852 584 SF-NVNVNKWLLTA-FDSSCLWVADRY------KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG 655 (891)
Q Consensus 584 SI-s~d~HK~L~~P-~g~G~llvR~~~------~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG 655 (891)
.| .-++.|.++.| .=+|+++..+++ .+...+.... .. .. ....+.++++...+.
T Consensus 233 vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~--------------~~-~~---~~s~~~q~a~~~~l~ 294 (409)
T PLN02656 233 VLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYF--------------DI-LG---GPATFIQAAVPTILE 294 (409)
T ss_pred EEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHH--------------hh-hc---CCCHHHHHHHHHHHh
Confidence 12 23477765545 556777764321 1111111000 00 00 011234444444442
Q ss_pred ---HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCce-eEEEEEecCCcchhhhhhHHH-HHHHHHhCCcEEEeeccc
Q psy852 656 ---LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRL-GLVCFRLRSENNLIADQNNRK-LLEDINASGRLHMVPASQ 730 (891)
Q Consensus 656 ---~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~-~iV~Fr~~~~~~~~~d~ln~~-L~~~L~~~G~~~~s~s~~ 730 (891)
..-+++..+...+.++.+.+.|++++++....+|+- .-++.+++........ .... +...|.+.|+.+.-++..
T Consensus 295 ~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~-~~~~~~~~~l~~~gV~v~pg~~f 373 (409)
T PLN02656 295 QTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLEDIS-DDIDFCFKLAREESVIILPGTAV 373 (409)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcCCCC-CHHHHHHHHHHhCCEEEecchhc
Confidence 233556666667778888899988765543334544 3455555311000000 1223 445667789886655544
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.....+ +++.. +++.+++.++.|++.+
T Consensus 374 g~~~~iRi~~~~--~~e~l~eal~rl~~~~ 401 (409)
T PLN02656 374 GLKNWLRITFAA--DPSSLEEALGRIKSFY 401 (409)
T ss_pred CCCCeEEEEeCC--CHHHHHHHHHHHHHHH
Confidence 444566 88874 6788888887777654
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.017 Score=68.14 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=69.8
Q ss_pred EEecCCCChHHHHHHH-HcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH---HHH
Q psy852 145 AYCSKEAHSCVEKAAM-MAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA---EIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~-~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~ 218 (891)
|++..-........+. ..|.+++.|+++ +...+|+++|++.+++..+++..+-+|.++--+|.||.+-+.+ +|+
T Consensus 138 Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll 217 (468)
T PLN02450 138 FLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLV 217 (468)
T ss_pred EEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHH
Confidence 5555445555555554 467899999986 3457899999999887555555566666777899999997654 667
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|++++++|.+|=+|+.+.
T Consensus 218 ~~a~~~~~~iI~DE~Y~~~~ 237 (468)
T PLN02450 218 DFITAKNIHLISDEIYSGTV 237 (468)
T ss_pred HHHHHCCcEEEEEccccccc
Confidence 78889999999999996543
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.06 Score=61.35 Aligned_cols=112 Identities=10% Similarity=0.002 Sum_probs=71.0
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEE------EEecCCCC-cccHH
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLK------ILEPDDKN-SLRGA 180 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~------~V~~d~~g-~id~~ 180 (891)
++++|+. .|...+.++|...+ .+-+|.....-|-|..-++.+.+.+.. .++..... ..|++
T Consensus 89 ~~~SGse-A~~~Al~~ar~~~~-----------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~ 156 (375)
T PRK04260 89 FCNSGAE-ANEAAIKIARKATG-----------KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLN 156 (375)
T ss_pred EcCccHH-HHHHHHHHHHHhcC-----------CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHH
Confidence 3467765 45555666775421 122455556679887766644322110 01101111 23889
Q ss_pred HHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 181 TLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 181 ~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+|++.+.+. +.+|++...++++|.+-| +++|.++|+++|+++++|.++.|+
T Consensus 157 ~l~~~l~~~------~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~ 211 (375)
T PRK04260 157 SVKALVNKN------TAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGM 211 (375)
T ss_pred HHHHhcCCC------eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 999877532 357777777788888865 899999999999999999999663
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.015 Score=66.46 Aligned_cols=84 Identities=11% Similarity=-0.042 Sum_probs=67.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH-
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE- 223 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~- 223 (891)
|++++-+|+.....+...|.+++.++.++++.+|+++|++.. +. +.+|+++..+|.||.+-+.++|.++++.
T Consensus 122 Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~~------~~~v~l~nP~NPTG~~~~~~~l~~l~~~~ 194 (370)
T PRK09105 122 LVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAAD-PN------AGLIYICNPNNPTGTVTPRADIEWLLANK 194 (370)
T ss_pred EEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhcC-CC------CCEEEEeCCCCCCCcCcCHHHHHHHHHhC
Confidence 666677788787777778889999999888999999998752 11 2366667789999999999999988764
Q ss_pred -cCCceeeecccc
Q psy852 224 -FDVWLHVDGAYA 235 (891)
Q Consensus 224 -~~~~lHvDaA~G 235 (891)
+++++.+|-+|.
T Consensus 195 ~~~~~lIvDEaY~ 207 (370)
T PRK09105 195 PAGSVLLVDEAYI 207 (370)
T ss_pred CCCcEEEEECchH
Confidence 389999999993
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.02 Score=65.71 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=63.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|++..-.......++...|.+++.||++++ +.+|+++|++.+.+. +-+++++--+|.||.+- .+++|++
T Consensus 120 vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~~~s~~~~~~l~~ 193 (396)
T PRK09147 120 VVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWAR------TQLLFVCSPGNPTGAVLPLDDWKKLFA 193 (396)
T ss_pred EEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhc------cEEEEEcCCCCCcCccCCHHHHHHHHH
Confidence 555444444455566777889999999754 479999999877543 23455567799999986 5667778
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|++++++|-+|=+|+-
T Consensus 194 ~a~~~~~~ii~De~y~~ 210 (396)
T PRK09147 194 LSDRYGFVIASDECYSE 210 (396)
T ss_pred HHHHcCeEEEeeccccc
Confidence 88999999999999954
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.12 Score=61.28 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=46.7
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|++.|++.++.. +..+.+|++.-..+.+|.+-| +++|.++|++||+++++|-++.|+
T Consensus 210 d~~~l~~~l~~~---~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~ 270 (474)
T PLN02624 210 DLDALEKIFEED---GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGL 270 (474)
T ss_pred CHHHHHHHHHhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence 689999888632 233567777777888999888 999999999999999999999763
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.098 Score=60.49 Aligned_cols=257 Identities=6% Similarity=-0.008 Sum_probs=136.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
.|+ +|.|+++++..++.+.-. +...|++..-........+...|.+++.+|.+ .+..
T Consensus 99 ~I~--it~G~~~al~~~~~~l~~-------------------~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (409)
T PLN00143 99 DVY--LTLGCKHAAEIIIKVLAR-------------------PEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWE 157 (409)
T ss_pred hEE--EecChHHHHHHHHHHHcC-------------------CCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCc
Confidence 455 677888888777654311 11235555555666667778889999999874 3457
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC-----CCcc----
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI-----EYAD---- 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi-----~~aD---- 583 (891)
+|+++|++++++.+ ..++++ +-.|++. |.++ .++- ...+
T Consensus 158 ~d~~~l~~~~~~~~----~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 233 (409)
T PLN00143 158 VDLDAVEAIADENT----IAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVP 233 (409)
T ss_pred CCHHHHHHhcccCC----EEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCc
Confidence 99999998876431 222333 2356554 3221 1111 0011
Q ss_pred E-EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH---Hhh
Q psy852 584 S-FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG---LSG 658 (891)
Q Consensus 584 S-Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG---~~G 658 (891)
. +.-+..|.++.| .-+|+++..++..+.+....-... .. ..... .++ ..+.+.+....+. ..-
T Consensus 234 vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~-~~-------~~~~~-~~~---~~~~q~a~~~~l~~~~~~~ 301 (409)
T PLN00143 234 VITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSI-KK-------ALNPA-PFP---PTFIQAAIPEILEKTTEDF 301 (409)
T ss_pred EEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHH-HH-------HHhcc-CCC---CchHHHHHHHHHhcChHHH
Confidence 1 334577875555 557777765432221100000000 00 00000 000 1233334444442 334
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-eeEEEEEecCCcchhhhhhHHHHHH-HHHhCCcEEEeeccccCCeEE
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-LGLVCFRLRSENNLIADQNNRKLLE-DINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-~~iV~Fr~~~~~~~~~d~ln~~L~~-~L~~~G~~~~s~s~~~g~~~l 736 (891)
+++.++...+..+++.+.|++++...+..+|+ ..-+++++++...... .....+.. .+.+.|+.+.-+........+
T Consensus 302 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~~i 380 (409)
T PLN00143 302 FSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDI-EDDMEFCLKLAKEESLIILPGVTVGLKNWL 380 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcCCC-CCHHHHHHHHHHhCCEEEeCccccCCCCeE
Confidence 66677777777788888888876544444443 4566677642100000 02344544 446789876655544444566
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++. ++.+++++.++.|.+.+
T Consensus 381 Ri~~~--~~~~~l~~al~rl~~~l 402 (409)
T PLN00143 381 RITFA--VEQSSLEDGLGRLKSFC 402 (409)
T ss_pred EEEEc--CCHHHHHHHHHHHHHHH
Confidence 8876 35788888888887655
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.26 Score=58.16 Aligned_cols=253 Identities=5% Similarity=-0.019 Sum_probs=134.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
+|+ +|.|+++++..++.+.-. +.-.|++..-..+.....+...|.+++.+|.. .+..
T Consensus 133 ~I~--it~G~~~al~~~~~~l~~-------------------pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~ 191 (462)
T PLN02187 133 DIF--LTAGCNQGIEIVFESLAR-------------------PNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWE 191 (462)
T ss_pred cEE--EeCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCc
Confidence 566 788999988877665311 11235555555555666677888899988873 4688
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh--------------hcCCCC---------cc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK--------------SQGIEY---------AD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~--------------ldGi~~---------aD 583 (891)
+|+++|++++++.+ .-+++++ -.|++. |.++ .++-.. ..
T Consensus 192 ~d~~~l~~~~~~~~----~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~ 267 (462)
T PLN02187 192 IDLEGIEAIADENT----VAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVP 267 (462)
T ss_pred cCHHHHHHhcCCCc----EEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCc
Confidence 99999998886532 2233332 456654 3221 111000 01
Q ss_pred EEEE-cCcccCCcc-cccEEEEEeCCccch---hhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--
Q psy852 584 SFNV-NVNKWLLTA-FDSSCLWVADRYKLT---SALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-- 655 (891)
Q Consensus 584 SIs~-d~HK~L~~P-~g~G~llvR~~~~L~---~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-- 655 (891)
.|++ +..|.++.| .=+|+++..++..+. ..+. ....+ +.+. ....+.+++....+.
T Consensus 268 vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~------------~~~~----~~s~~~Q~a~~~~L~~~ 331 (462)
T PLN02187 268 VLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNL------------DVTP----DPATIIQAALPAILEKA 331 (462)
T ss_pred EEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhc------------cccC----CCCHHHHHHHHHHHhcC
Confidence 2333 566765555 336666654332110 0110 00000 0000 001234444444442
Q ss_pred -HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCce-eEEEEEecCCcchhhhhhHHHHHH-HHHhCCcEEEeeccccC
Q psy852 656 -LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRL-GLVCFRLRSENNLIADQNNRKLLE-DINASGRLHMVPASQEQ 732 (891)
Q Consensus 656 -~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~-~iV~Fr~~~~~~~~~d~ln~~L~~-~L~~~G~~~~s~s~~~g 732 (891)
..-+++..+...+.++++.+.|++++.+.....|.. +-+.+++......... ....+.. .+.+.|+.+.-+.....
T Consensus 332 ~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~-~~~~~~~~ll~~~gV~v~pG~~fg~ 410 (462)
T PLN02187 332 DKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIK-DDIDFCVKLAREENLVFLPGDALGL 410 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCC-CHHHHHHHHHhhCCEEEECccccCC
Confidence 234555666677788889999988765543434543 4555555311000000 1234444 44678887665554434
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..++ +++.. .++.++..++.|.+.+
T Consensus 411 ~~~iRis~~~--~~e~l~~al~rL~~~l 436 (462)
T PLN02187 411 KNWMRITIGV--EAHMLEDALERLKGFC 436 (462)
T ss_pred CCeEEEEeCC--CHHHHHHHHHHHHHHH
Confidence 4566 88763 5788888888887765
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.51 Score=54.84 Aligned_cols=147 Identities=6% Similarity=0.037 Sum_probs=81.8
Q ss_pred ccEEEEcCcccCCc-ccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHH-HHHhhH
Q psy852 582 ADSFNVNVNKWLLT-AFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT-YGLSGL 659 (891)
Q Consensus 582 aDSIs~d~HK~L~~-P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~-lG~~G~ 659 (891)
.|-++++ |+++. =+++|+++++++. ..+. ... + ..|.. +-+......-.+++. +....+
T Consensus 256 PDi~~~~--K~lg~~G~pigav~~~~~~---~~~~--~~~--~---------~~T~~-gnpl~~aaa~a~l~~~i~~~~l 316 (412)
T TIGR02407 256 PDIVCLS--KSISGYGLPLALTLIKPEL---DVWK--PGE--H---------NGTFR-GNNLAFVTATAALEYYWSDDAF 316 (412)
T ss_pred CCEEEec--hhccCCccceeEEEEchhh---hccC--CCc--c---------CCCCC-ccHHHHHHHHHHHHHHhcccHH
Confidence 5767665 99875 5778999997652 1111 000 0 01111 111111222344553 333334
Q ss_pred HHHHHHHHHHHHHHHHHhcc----CCCcEEeCCCc-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCe
Q psy852 660 QKYIRRHCELAKLFEGKVRR----DPRFEISNDVR-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQND 734 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~----~~~~eil~~~~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~ 734 (891)
. ++..++.++|.++|+. .+.+. ...+. -.++.+.+.+ +.....+...+.++|+++. +... ...
T Consensus 317 ~---~~~~~~g~~l~~~l~~l~~~~~~~~-~~vrg~Gl~~~l~l~~------~~~~~~~~~~~~~~Gv~v~-~~~~-~~~ 384 (412)
T TIGR02407 317 E---KAVQRKSEIIQERLDRIVAEYPELI-KQVRGRGLMQGIECGD------GDLAGKIAKAAFENGLIIE-TSGP-NDE 384 (412)
T ss_pred H---HHHHHHHHHHHHHHHHHHhhCCCce-EeeecceeEEEEEecC------hHHHHHHHHHHHHCCCEEe-ccCC-CCC
Confidence 3 4444555566555543 34332 22122 2355677743 2345678889999998743 2221 234
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
++ +++...+|++|+|++++.|++.+
T Consensus 385 ~lr~~p~l~~t~~~i~~~~~~l~~~l 410 (412)
T TIGR02407 385 VIKLLPPLTIDEETLQQGLDILEQAV 410 (412)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 56 88888999999999999999876
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.49 Score=55.89 Aligned_cols=164 Identities=14% Similarity=0.119 Sum_probs=84.8
Q ss_pred ccEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-+++ -|.++.=+ +.|+++.+++ +.+.+...... . +.. ....|.. +-+......-++|+.+-.+++.
T Consensus 282 PDiv~~--gKgl~gG~~Pi~av~~~~~--i~~~~~~~~~~--~---~~~-~h~~T~~-gnpl~~Aaa~a~L~~~~~~~l~ 350 (461)
T PRK07482 282 PDLITV--AKGLTSAYAPLSGSIVGEK--VWDVLEQGSDE--H---GAI-GHGWTYS-GHPICAAAALANLDILERENLV 350 (461)
T ss_pred CCEEEE--ccccccCccccceeeecHH--HHHHHhccccc--C---Ccc-ccCCCCC-cCHHHHHHHHHHHHHHHhCCHH
Confidence 688886 78876544 6788888765 22222211000 0 000 0011111 2233333444555655555543
Q ss_pred HHHHHHHHHHHHHHHHhccC-CCcEEeCCC-ce-eEEEEEecCCcc--hhh---hhhHHHHHHHHHhCCcEEEeeccccC
Q psy852 661 KYIRRHCELAKLFEGKVRRD-PRFEISNDV-RL-GLVCFRLRSENN--LIA---DQNNRKLLEDINASGRLHMVPASQEQ 732 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~-~~~eil~~~-~~-~iV~Fr~~~~~~--~~~---d~ln~~L~~~L~~~G~~~~s~s~~~g 732 (891)
++..++.++|.+.|+++ ....++.+. .. .++.+.+..... +.. ..+...+...+.+.|++..... +
T Consensus 351 ---~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~---~ 424 (461)
T PRK07482 351 ---GNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP---H 424 (461)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC---C
Confidence 44456666666666542 111122111 11 244455532110 000 1245678888999997742211 2
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
..++ +.+...+|++|||++++.+++.+..+
T Consensus 425 ~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 425 GDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456 77777889999999999999887543
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.37 Score=55.59 Aligned_cols=92 Identities=11% Similarity=0.152 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHhccCC-CcEEeCCC-c-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 661 KYIRRHCELAKLFEGKVRRDP-RFEISNDV-R-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~-~~eil~~~-~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
+..++..++.++|.+.|+++. .+.+..++ . ...+.+.+.+.. .....++...|.+.|+... + .+...+
T Consensus 304 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~----~~~~~~~~~~l~~~Gv~v~-~---~g~~~lR 375 (403)
T PRK05093 304 EVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQY----KGRARDFLNAAAEEGVMVL-V---AGPDVLR 375 (403)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcc----hhHHHHHHHHHHHCCeEEe-c---CCCCEEE
Confidence 344666777888888887641 12222222 2 234455553210 1245678888988997643 2 233456
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++++...++++|+++++.|++.+.
T Consensus 376 l~~~~~~~~~~i~~~~~~l~~~l~ 399 (403)
T PRK05093 376 FAPSLVIEEADIDEGLARFEKAVA 399 (403)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 888887899999999999988763
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.095 Score=60.96 Aligned_cols=210 Identities=12% Similarity=0.127 Sum_probs=113.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH----HHHHHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC----VEKAAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S----v~Kaa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|++++..++.+.-. . ++ .|+++...+.. +...+...|++++.++.+ |+
T Consensus 77 ~~~sG~~Ai~~al~~l~~----~--------------Gd-~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~ 132 (418)
T TIGR01326 77 AVASGQAAITYAILNLAQ----A--------------GD-NIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DP 132 (418)
T ss_pred EEccHHHHHHHHHHHHhC----C--------------CC-EEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CH
Confidence 577888888877765411 1 11 35555555433 234445678888888763 88
Q ss_pred HHHHHHHHhhhhcCCccEEEEecC----Cccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCc
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTL----GTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLT 595 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vvata----GTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~ 595 (891)
++|+++|++.++ .+++ .+. |... |+++ +|. + .++|.+..+.|||+++
T Consensus 133 ~~l~~~l~~~t~----~V~l-e~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g 207 (418)
T TIGR01326 133 EEFEKAIDENTK----AVFA-ETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGG 207 (418)
T ss_pred HHHHHhcCcCCe----EEEE-ECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccC
Confidence 999998865321 2222 222 2222 3331 222 1 3489999999999987
Q ss_pred ccc-cEEEEEeCCccchhhhccCCCccccCCCCCc--------------------cccCCcccccccccchHHHHHHHHH
Q psy852 596 AFD-SSCLWVADRYKLTSALVVDPLYLQHGHEGAI--------------------DYRHWGIPLSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 596 P~g-~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~--------------------~~~~~ti~~SRr~~aL~lW~~L~~l 654 (891)
+-. .|.+++........ ... -..+........ .....+. ...+...|+.++
T Consensus 208 ~G~~lGg~v~~~~~~~~~-~~~-~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~----~~~p~~a~~~~~-- 279 (418)
T TIGR01326 208 HGTAIGGVIVDGGKFDWA-NGR-FPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGA----ALSPFNAFLLLQ-- 279 (418)
T ss_pred CccceEEEEEeccccccc-ccc-cccccCCCCccccchhhhhhchhhHHHHHHHHHHHhcCC----CCCHHHHHHHHC--
Confidence 633 67777754321110 000 000000000000 0000000 112334555433
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC------------------ceeEEEEEecCCcchhhhhhHHHHHHH
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV------------------RLGLVCFRLRSENNLIADQNNRKLLED 716 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~------------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~ 716 (891)
|...+..++++..+++..+++.|.+.+++..+.-| --++++|.+++. .....++++.
T Consensus 280 ~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~~-----~~~~~~f~~~ 354 (418)
T TIGR01326 280 GLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGG-----REAGKKFIDA 354 (418)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecCC-----HHHHHHHHHh
Confidence 66677777888888999999999998887654211 125999999643 1223455555
Q ss_pred HHh
Q psy852 717 INA 719 (891)
Q Consensus 717 L~~ 719 (891)
|+-
T Consensus 355 l~l 357 (418)
T TIGR01326 355 LKL 357 (418)
T ss_pred CCc
Confidence 543
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 891 | ||||
| 1js3_A | 486 | Crystal Structure Of Dopa Decarboxylase In Complex | 7e-68 | ||
| 3rbf_A | 480 | Crystal Structure Of Human Aromatic L-Amino Acid De | 7e-66 | ||
| 3rch_A | 480 | Crystal Structure Of Human Aromatic L-Amino Acid De | 3e-65 | ||
| 3k40_A | 475 | Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl | 9e-62 | ||
| 4e1o_A | 481 | Human Histidine Decarboxylase Complex With Histidin | 1e-61 | ||
| 2jis_A | 515 | Human Cysteine Sulfinic Acid Decarboxylase (Csad) I | 5e-13 | ||
| 2jis_A | 515 | Human Cysteine Sulfinic Acid Decarboxylase (Csad) I | 4e-08 | ||
| 2jis_A | 515 | Human Cysteine Sulfinic Acid Decarboxylase (Csad) I | 7e-07 | ||
| 2okk_A | 497 | The X-Ray Crystal Structure Of The 65kda Isoform Of | 1e-12 | ||
| 2okk_A | 497 | The X-Ray Crystal Structure Of The 65kda Isoform Of | 6e-06 | ||
| 3vp6_A | 511 | Structural Characterization Of Glutamic Acid Decarb | 3e-12 | ||
| 3vp6_A | 511 | Structural Characterization Of Glutamic Acid Decarb | 5e-07 | ||
| 3vp6_A | 511 | Structural Characterization Of Glutamic Acid Decarb | 7e-04 | ||
| 2okj_A | 504 | The X-Ray Crystal Structure Of The 67kda Isoform Of | 3e-12 | ||
| 2okj_A | 504 | The X-Ray Crystal Structure Of The 67kda Isoform Of | 1e-06 | ||
| 2qma_A | 497 | Crystal Structure Of Glutamate Decarboxylase Domain | 4e-09 | ||
| 2qma_A | 497 | Crystal Structure Of Glutamate Decarboxylase Domain | 1e-04 | ||
| 2qma_A | 497 | Crystal Structure Of Glutamate Decarboxylase Domain | 2e-04 |
| >pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486 | Back alignment and structure |
|
| >pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480 | Back alignment and structure |
|
| >pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480 | Back alignment and structure |
|
| >pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475 | Back alignment and structure |
|
| >pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481 | Back alignment and structure |
|
| >pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515 | Back alignment and structure |
|
| >pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515 | Back alignment and structure |
|
| >pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515 | Back alignment and structure |
|
| >pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497 | Back alignment and structure |
|
| >pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497 | Back alignment and structure |
|
| >pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511 | Back alignment and structure |
|
| >pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511 | Back alignment and structure |
|
| >pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511 | Back alignment and structure |
|
| >pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504 | Back alignment and structure |
|
| >pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504 | Back alignment and structure |
|
| >pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497 | Back alignment and structure |
|
| >pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497 | Back alignment and structure |
|
| >pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 891 | |||
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 1e-102 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 4e-88 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 2e-66 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 2e-10 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 2e-05 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 1e-100 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 1e-86 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 2e-65 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 4e-10 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 1e-05 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 1e-100 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 2e-84 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 4e-67 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 1e-09 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 3e-05 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 2e-87 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 1e-75 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 4e-61 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 2e-06 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 3e-04 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 1e-85 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 5e-80 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 3e-64 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 5e-07 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 2e-81 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 3e-77 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 3e-60 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 2e-06 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 3e-14 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 3e-13 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 2e-11 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 3e-14 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 2e-12 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 6e-09 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 2e-13 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 5e-11 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 3e-10 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 6e-12 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 5e-06 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 5e-06 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 2e-09 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 6e-09 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 1e-07 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 3e-05 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 1e-04 |
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 325 bits (835), Expect = e-102
Identities = 122/297 (41%), Positives = 171/297 (57%), Gaps = 42/297 (14%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
S+ SE + +LAAR I ++K P DE L ++L+AY S +AHS VEKA +++ V+
Sbjct: 152 STVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVK 211
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC----------------- 572
+K L DD SLRG L++ +++D+ G +P FV TLGTT
Sbjct: 212 MKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREG 271
Query: 573 ------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
+R +GIEYADSF N +KW++ FD + WV D+YKL
Sbjct: 272 LWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQT 331
Query: 614 LVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672
V+P+YL+H + G A D+ HW IPLSRRFRS+KLWFVIR++G+ LQ ++R E+AK
Sbjct: 332 FSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKY 391
Query: 673 FEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
FE VR DP FEI LGLV FRL+ N+L +L++I +GRL ++PA+
Sbjct: 392 FESLVRNDPSFEIPAKRHLGLVVFRLKGPNSL-----TENVLKEIAKAGRLFLIPAT 443
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 288 bits (738), Expect = 4e-88
Identities = 109/260 (41%), Positives = 152/260 (58%), Gaps = 35/260 (13%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELET 60
+ + V HWQ P HAY+P+ S+PS+L DML+DAI C+GF+WA+SP+CTELE
Sbjct: 62 FGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEM 121
Query: 61 IVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNI 120
V+DWL K +GLPE FL + P + GGGV+QS +
Sbjct: 122 NVMDWLAKMLGLPEHFLHHHPSSQ-------------------------GGGVLQSTVSE 156
Query: 121 IVLT----------RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 170
L K P DE L ++L+AY S +AHS VEKA +++ V++K L
Sbjct: 157 STLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLP 216
Query: 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHV 230
DD SLRG L++ +++D+ G +P FV TLGTT C+FD L+E+GP+ +WLH+
Sbjct: 217 VDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHI 276
Query: 231 DGAYAGSSFICPEFRPFMNG 250
D AYAG++F+CPEFR F+ G
Sbjct: 277 DAAYAGTAFLCPEFRGFLKG 296
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 2e-66
Identities = 76/142 (53%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+WLH+D AYAG++F+CPEFR F+ GIEYADSF N +KW++ FD + WV D+YKL
Sbjct: 270 EGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQ 329
Query: 391 SALVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449
V+P+YL+H + G A D+ HW IPLSRRFRS+KLWFVIR++G+ LQ ++R E+A
Sbjct: 330 QTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMA 389
Query: 450 KLFEGKVRRDPRFEISNDVRSS 471
K FE VR DP FEI
Sbjct: 390 KYFESLVRNDPSFEIPAKRHLG 411
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
S+ SE + +L+AR I ++K P DE L ++L+AY S +AHS VE
Sbjct: 152 STVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE 202
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPASF 819
+R++ + LGLV FRL+ N++ +L++I +GRL ++PA+
Sbjct: 395 LVRNDPSFEIPAKRHLGLVVFRLKGPNSL-----TENVLKEIAKAGRLFLIPATI 444
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 321 bits (825), Expect = e-100
Identities = 129/299 (43%), Positives = 179/299 (59%), Gaps = 44/299 (14%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
SASE V +LAAR + + +L+ P + +G +L KL+AY S +AHS VE+A ++ V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC----------------- 572
LK + D K ++R + L++ +++D+ G IPFFV TLGTTSC
Sbjct: 206 LKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEED 265
Query: 573 ------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
+R G+E+ADSFN N +KWLL FD S +WV R LT A
Sbjct: 266 IWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGA 325
Query: 614 LVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670
+DP+YL+H H+G+ DYRHW +PL RRFRSLK+WFV R YG+ GLQ YIR+H +L+
Sbjct: 326 FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLS 385
Query: 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
FE V +DPRFE+ +V LGLVCFRL+ + L N LLE IN++ ++H+VP
Sbjct: 386 HEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGL-----NEALLERINSARKIHLVPCR 439
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 283 bits (727), Expect = 1e-86
Identities = 120/260 (46%), Positives = 158/260 (60%), Gaps = 36/260 (13%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELET 60
+ + + VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET
Sbjct: 57 LQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELET 116
Query: 61 IVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNI 120
+++DWLGK + LPE FL GGGVIQ +
Sbjct: 117 VMMDWLGKMLQLPEAFLAGEAGE--------------------------GGGVIQGSASE 150
Query: 121 IVLT----------RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 170
L R + P + +G +L KL+AY S +AHS VE+A ++ V+LK +
Sbjct: 151 ATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIP 210
Query: 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHV 230
D K ++R + L++ +++D+ G IPFFV TLGTTSCCSFDNL E+GP+ E D+WLHV
Sbjct: 211 SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHV 270
Query: 231 DGAYAGSSFICPEFRPFMNG 250
D AYAGS+FICPEFR +NG
Sbjct: 271 DAAYAGSAFICPEFRHLLNG 290
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 2e-65
Identities = 84/144 (58%), Positives = 105/144 (72%), Gaps = 3/144 (2%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
D+WLHVD AYAGS+FICPEFR +NG+E+ADSFN N +KWLL FD S +WV R LT
Sbjct: 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLT 323
Query: 391 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447
A +DP+YL+H H+G+ DYRHW +PL RRFRSLK+WFV R YG+ GLQ YIR+H +
Sbjct: 324 GAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQ 383
Query: 448 LAKLFEGKVRRDPRFEISNDVRSS 471
L+ FE V +DPRFE+ +V
Sbjct: 384 LSHEFEAFVLQDPRFEVCAEVTLG 407
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
SASE V +L+AR + + +L+ P + +G +L KL+AY S +AHS VE
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE 196
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPASF 819
+ + + LGLVCFRL+ + + N LLE IN++ ++H+VP
Sbjct: 391 FVLQDPRFEVCAEVTLGLVCFRLKGSDGL-----NEALLERINSARKIHLVPCRL 440
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 320 bits (821), Expect = e-100
Identities = 123/296 (41%), Positives = 171/296 (57%), Gaps = 43/296 (14%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
+ASE V +L A+A+ + ++K++HP DE +L KL+ YCS +AHS VE+A ++ V+
Sbjct: 146 GTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVK 205
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC----------------- 572
L+ + + + +RGA L + ++QD G IPF+ TLGTT+
Sbjct: 206 LRSV-QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHN 264
Query: 573 ------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
YR +GIE ADSFN N +KW+L FD S +W+ D + +A
Sbjct: 265 LWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNA 324
Query: 614 LVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672
VDPLYL+H +G A DYRHW IPL RRFR+LKLWFV+R YG+ LQ +IRRHC AK
Sbjct: 325 FNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQ 384
Query: 673 FEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728
F D RFE++ ++ +GLVCFRL+ N N LL+ IN G +H+VPA
Sbjct: 385 FGDLCVADSRFELAAEINMGLVCFRLKGSNER-----NEALLKRINGRGHIHLVPA 435
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 2e-84
Identities = 111/260 (42%), Positives = 153/260 (58%), Gaps = 37/260 (14%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELET 60
M + + VTHW P+FHAYFP+ NSYP+++ADMLS AI CIGF+W ASP+CTELE
Sbjct: 57 MQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEV 116
Query: 61 IVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNI 120
+++DWLGK + LP +FL GGGVIQ +
Sbjct: 117 VMMDWLGKMLELPAEFLACSGGK--------------------------GGGVIQGTASE 150
Query: 121 IVLT----------RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 170
L + K++HP DE +L KL+ YCS +AHS VE+A ++ V+L+ +
Sbjct: 151 STLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSV- 209
Query: 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHV 230
+ + +RGA L + ++QD G IPF+ TLGTT+ C+FD L E GPV + ++W+HV
Sbjct: 210 QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHV 269
Query: 231 DGAYAGSSFICPEFRPFMNG 250
D AYAGS+FICPE+R M G
Sbjct: 270 DAAYAGSAFICPEYRHLMKG 289
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 4e-67
Identities = 78/142 (54%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
++W+HVD AYAGS+FICPE+R M GIE ADSFN N +KW+L FD S +W+ D +
Sbjct: 263 HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVV 322
Query: 391 SALVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449
+A VDPLYL+H +G A DYRHW IPL RRFR+LKLWFV+R YG+ LQ +IRRHC A
Sbjct: 323 NAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFA 382
Query: 450 KLFEGKVRRDPRFEISNDVRSS 471
K F D RFE++ ++
Sbjct: 383 KQFGDLCVADSRFELAAEINMG 404
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
+ASE V +L A+A+ + ++K++HP DE +L KL+ YCS +AHS VE
Sbjct: 146 GTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVE 196
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPA 817
+++ + +GLVCFRL+ N N LL+ IN G +H+VPA
Sbjct: 388 LCVADSRFELAAEINMGLVCFRLKGSNER-----NEALLKRINGRGHIHLVPA 435
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 286 bits (735), Expect = 2e-87
Identities = 57/298 (19%), Positives = 106/298 (35%), Gaps = 41/298 (13%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPF-VDEGVLLSKLMAYCSKEAHSCVEKAAMMA-- 526
S ++ + ++ AR KL + KL CSK++H V+K+A
Sbjct: 165 SGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL 224
Query: 527 -FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC------------- 572
+ ++ + ++ L +V+ Q + G IPF + T GTT
Sbjct: 225 GEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMA 284
Query: 573 ---------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
++ + +G+E A S +V+ +K L V D+
Sbjct: 285 VKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF 344
Query: 611 TSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670
L+ YL H+ + I ++RF +LK++ ++ G L
Sbjct: 345 -KFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQT 403
Query: 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728
+R + +FE+ + L V FR E + D+ N+ L + G +
Sbjct: 404 LEVADMIRTNDQFELLAEPSLSTVLFRATHETADL-DELNKALRLEALTRGIAVLGET 460
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 1e-75
Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 49/264 (18%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELET 60
+ + ++ QHP A+ + P+V A+ + A+ SW + S T +E
Sbjct: 84 IDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQ 143
Query: 61 IVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SV 117
V++WL L EK G+ +
Sbjct: 144 KVVNWLCDKYDLSEK----------------------------------ADGIFTSGGTQ 169
Query: 118 QNIIVLT--------RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA---FVRL 166
N + L + + KL CSK++H V+K+A +
Sbjct: 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAV 229
Query: 167 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDV 226
++ + ++ L +V+ Q + G IPF + T GTT + D+L I +A + D+
Sbjct: 230 MTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDM 289
Query: 227 WLHVDGAYAGSSFICPEFRPFMNG 250
W+HVDGAY G + I + + G
Sbjct: 290 WMHVDGAYGG-ALILSSHKSRLKG 312
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 4e-61
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
D+W+HVDGAY G+ I + + G+E A S +V+ +K L V D+
Sbjct: 287 HDMWMHVDGAYGGA-LILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF- 344
Query: 391 SALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAK 450
L+ YL H+ + I ++RF +LK++ ++ G L
Sbjct: 345 KFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTL 404
Query: 451 LFEGKVRRDPRFEISNDVRSS 471
+R + +FE+ + S
Sbjct: 405 EVADMIRTNDQFELLAEPSLS 425
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPF-VDEGVLLSKLMAYCSKEAHSCVE 318
S ++ + ++ AR KL + KL CSK++H V+
Sbjct: 165 SGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ 216
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPA 817
+R+ + L V FR E + D+ N+ L + G +
Sbjct: 409 MIRTNDQFELLAEPSLSTVLFRATHETADL-DELNKALRLEALTRGIAVLGET 460
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 281 bits (722), Expect = 1e-85
Identities = 56/322 (17%), Positives = 110/322 (34%), Gaps = 59/322 (18%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA--- 526
+ ++AAR + ++K + KL+ + S+++H ++KA
Sbjct: 158 PGGAISNMYSIMAARYKYFPEVKTKGMAA-----VPKLVLFTSEQSHYSIKKAGAALGFG 212
Query: 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-------------- 572
+ +++ +++ + A + + + GY+PF+V+ T GTT
Sbjct: 213 TDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICE 272
Query: 573 ---------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
+R K GIE A+S N +K + S + V ++ L
Sbjct: 273 KYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGIL 332
Query: 611 TSALVVDPLYLQH---GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHC 667
+ YL ++ + D I R K W + + G G + I +
Sbjct: 333 QGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCL 392
Query: 668 ELAKLFEGKVRRDPRFEI--SNDVRLGLVCFRLR----------SENNLIADQNNRKLLE 715
ELA+ K++ FE+ + + VCF + + K+
Sbjct: 393 ELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKA 452
Query: 716 DINASGRLHMVPASQEQNDEVF 737
+ SG + Q F
Sbjct: 453 LMMESGTTMVGYQPQGDKANFF 474
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 266 bits (683), Expect = 5e-80
Identities = 51/252 (20%), Positives = 104/252 (41%), Gaps = 44/252 (17%)
Query: 8 LSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLG 67
L + V HPRF +G + + L+ F++ +P +E I L +
Sbjct: 84 LKYGVRTG-HPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMR 142
Query: 68 KAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVLT 124
+ +G K G G+ ++ N+ +
Sbjct: 143 EIVGWSSKD---------------------------------GDGIFSPGGAISNMYSIM 169
Query: 125 --RGQKKIHPFVDEGV-LLSKLMAYCSKEAHSCVEKAAMMA---FVRLKILEPDDKNSLR 178
R K +G+ + KL+ + S+++H ++KA + +++ +++ +
Sbjct: 170 AAR-YKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKII 228
Query: 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSS 238
A + + + GY+PF+V+ T GTT +FD + EI + +++++WLHVD A+ G
Sbjct: 229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGL 288
Query: 239 FICPEFRPFMNG 250
+ + R +NG
Sbjct: 289 LMSRKHRHKLNG 300
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 3e-64
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+++WLHVD A+ G + + R +NGIE A+S N +K + S + V ++ L
Sbjct: 274 YNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQ 333
Query: 391 SALVVDPLYLQH---GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447
+ YL ++ + D I R K W + + G G + I + E
Sbjct: 334 GCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 393
Query: 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVC 479
LA+ K++ FE+ V + E VC
Sbjct: 394 LAEYLYAKIKNREEFEM---VFNGEPEHTNVC 422
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 7/51 (13%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
+ +++AR + ++K + KL+ + S+++H ++
Sbjct: 158 PGGAISNMYSIMAARYKYFPEVKTKGMAA-----VPKLVLFTSEQSHYSIK 203
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 271 bits (694), Expect = 2e-81
Identities = 63/321 (19%), Positives = 106/321 (33%), Gaps = 58/321 (18%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV- 528
S + AR Q K+ L L + SKE H ++K A +
Sbjct: 172 PGGSISNMYAVNLARYQRYPDCKQRGLRT-----LPPLALFTSKECHYSIQKGAAFLGLG 226
Query: 529 --RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-------------- 572
+++++ D++ + L + + E G +PF VS T GTT
Sbjct: 227 TDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQ 286
Query: 573 ---------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADR-YK 609
+R GI+ ADS N +K L S L + D
Sbjct: 287 RHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNL 346
Query: 610 LTSALVVDPLYLQH---GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRH 666
L YL ++ A+D + RR LKLW + + G GL++ I +
Sbjct: 347 LKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQA 406
Query: 667 CELAKLFEGKVRRDPRFEISNDVRLGLVCFRLR----------SENNLIADQNNRKLLED 716
LA+ ++++ FE+ + VCF + + + L E
Sbjct: 407 FVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKER 466
Query: 717 INASGRLHMVPASQEQNDEVF 737
+ G + + F
Sbjct: 467 MVKEGSMMIGYQPHGTRGNFF 487
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 3e-77
Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 44/258 (17%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELET 60
+ + + V HPRF SG ++ ++++++ +++ +P +E
Sbjct: 93 LERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEE 151
Query: 61 IVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SV 117
VL L +G G G+ S+
Sbjct: 152 EVLRKLRALVGWSS-----------------------------------GDGIFCPGGSI 176
Query: 118 QNIIVLTRGQKKIHPFVDEGVL--LSKLMAYCSKEAHSCVEKAAMMAFV---RLKILEPD 172
N+ + + + +P + L L L + SKE H ++K A + +++++ D
Sbjct: 177 SNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD 236
Query: 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDG 232
++ + L + + E G +PF VS T GTT +FD L I V + +WLHVD
Sbjct: 237 ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDA 296
Query: 233 AYAGSSFICPEFRPFMNG 250
A+ GS + R ++G
Sbjct: 297 AWGGSVLLSQTHRHLLDG 314
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 213 bits (543), Expect = 3e-60
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADR-YKL 389
+WLHVD A+ GS + R ++GI+ ADS N +K L S L + D L
Sbjct: 288 HGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLL 347
Query: 390 TSALVVDPLYLQH---GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHC 446
YL ++ A+D + RR LKLW + + G GL++ I +
Sbjct: 348 KRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAF 407
Query: 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVC 479
LA+ ++++ FE+ + E + VC
Sbjct: 408 VLARYLVEEMKKREGFELVMEP-----EFVNVC 435
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
S + AR Q K+ L L + SKE H ++
Sbjct: 172 PGGSISNMYAVNLARYQRYPDCKQRGLRT-----LPPLALFTSKECHYSIQ 217
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 3e-14
Identities = 41/270 (15%), Positives = 71/270 (26%), Gaps = 58/270 (21%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
S +E + + M R A + P AH+ +KAA ++
Sbjct: 167 SGGTESLLLAMKTYRDWARATKGITAPEA-----------VVPVSAHAAFDKAAQYFGIK 215
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT------------------- 570
L D A +R+ + + T+ G
Sbjct: 216 LVRTPLDADYRADVAAMREAITPN-TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHV 274
Query: 571 -SCY----------------RKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
+C +E S + + +K+ A +S + L
Sbjct: 275 DACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQ 334
Query: 614 LVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672
+ + Y SR S W + + G G RR + A
Sbjct: 335 YFIAADWP------GGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADR 388
Query: 673 FEGKVRRDPRFEISNDVRLGLVCFRLRSEN 702
+ VR P +I D L + S+
Sbjct: 389 LKAGVRAIPSLKILGDP---LWVIAVASDE 415
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 3e-13
Identities = 30/145 (20%), Positives = 45/145 (31%), Gaps = 16/145 (11%)
Query: 332 DVWLHVDGAYAGSSFICP-------EFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVA 384
+ HVD G FI P PF +E S + + +K+ A +S +
Sbjct: 269 GIGCHVDACLGG--FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYR 326
Query: 385 DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIR 443
L + + Y SR S W + + G G R
Sbjct: 327 RPDLLHYQYFIAADWP------GGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATR 380
Query: 444 RHCELAKLFEGKVRRDPRFEISNDV 468
R + A + VR P +I D
Sbjct: 381 RILQAADRLKAGVRAIPSLKILGDP 405
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 37/256 (14%), Positives = 71/256 (27%), Gaps = 45/256 (17%)
Query: 3 LLFHFLSHQVTHWQHPRFHAYFPSGNSYP-SVLADMLSDAIGCIGFSWAASPSCTELETI 61
+ + + W+ G+ + + L ++ + PS + E
Sbjct: 84 EIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAE 143
Query: 62 VLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNII 121
V+ +G + +T GG + ++
Sbjct: 144 VVAMTAHMLGGDAA-----------------GGTVCGTVTS--------GG---TESLLL 175
Query: 122 -VLT-RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRG 179
+ T R + + AH+ +KAA ++L D
Sbjct: 176 AMKTYRDWARATKGITAPEA------VVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADV 229
Query: 180 ATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSF 239
A +R+ + + V+ + D + EI +A E + HVD G F
Sbjct: 230 AAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG--F 281
Query: 240 ICPEFRPFMNGKTSFD 255
I P FD
Sbjct: 282 ILPWAERLGYPVPPFD 297
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 35/271 (12%), Positives = 85/271 (31%), Gaps = 54/271 (19%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
S +E + + L+A+ A+ P + AH+ +KAA ++
Sbjct: 133 SGGTESLLLACLSAKMYALHHRGITEPEI-----------IAPVTAHAGFDKAAYYFGMK 181
Query: 530 LKILEPDDKN-SLRGATLRQVMQQDETMGY-------------------------IPFFV 563
L+ +E D + +++ + ++ + +P V
Sbjct: 182 LRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHV 241
Query: 564 STTLGT-----------TSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS 612
+ LG+ + + S + + +K+ SS + +
Sbjct: 242 DSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMH 301
Query: 613 ALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672
V+P + G + + W + G +G + + A
Sbjct: 302 QYYVNPAWT-----GGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMK 356
Query: 673 FEGKVRRD-PRFEISNDVRLGLVCFRLRSEN 702
F+ ++ + P +I + R ++ F ++ N
Sbjct: 357 FKKYIQENIPDLDIMGNPRYSVISFSSKTLN 387
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 16/146 (10%)
Query: 331 FDVWLHVDGAYAGSSFICP--------EFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLW 382
+ + LHVD FI + S + + +K+ SS +
Sbjct: 235 YKLPLHVDSCLGS--FIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIM 292
Query: 383 VADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYI 442
+ V+P + G + + W + G +G +
Sbjct: 293 YRNSDLRMHQYYVNPAWT-----GGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESC 347
Query: 443 RRHCELAKLFEGKVRRD-PRFEISND 467
+ A F+ ++ + P +I +
Sbjct: 348 QEIVGAAMKFKKYIQENIPDLDIMGN 373
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 6e-09
Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 48/235 (20%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLA-DMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAI 70
T W+ + G L P+ ++E+ V+ + +
Sbjct: 61 HTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMF 120
Query: 71 GLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLT--RGQK 128
P G TT GG + ++ +
Sbjct: 121 NAPS------DTGCGTTT---------------------SGG---TESLLLACLSAKMYA 150
Query: 129 KIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN-SLRGATLRQVMQ 187
H + E + AH+ +KAA ++L+ +E D + +++ +
Sbjct: 151 LHHRGITEPEI------IAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFIN 204
Query: 188 QDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICP 242
++ + + D++ +G +A+++ + LHVD FI
Sbjct: 205 KN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGS--FIVS 251
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 2e-13
Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Query: 146 YCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTT 202
+H KA + ++++E D+ + + ++++ +G P +ST
Sbjct: 180 IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTL 239
Query: 203 LGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSF 254
+ D++ EI + + +D+ ++GAYA + + +
Sbjct: 240 -TFFPPRNSDDIVEIAKICENYDIPHIINGAYAI---QNNYYLEKLKKAFKY 287
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 5e-11
Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 23/130 (17%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGI--EYADSFNVNVNKWLLTAFDSSCLWVADRYK 388
+D+ ++GAYA + + D+ + +K LLT ++ D
Sbjct: 260 YDIPHIINGAYAI---QNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEF 316
Query: 389 LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 448
+ + + G + + + + G + ++
Sbjct: 317 IK--------EISLSYPG-------RASATP---VVNTLVSLLSMGSKNYLELVKNQKNS 358
Query: 449 AKLFEGKVRR 458
KL + +
Sbjct: 359 KKLLDELLND 368
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 3e-10
Identities = 26/243 (10%), Positives = 65/243 (26%), Gaps = 74/243 (30%)
Query: 475 CIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 534
I +C+ AAR + S + +H KA + ++++E
Sbjct: 162 SISLCLSAARKKYGSNV-----------------VIYPYASHKSPIKAVSFVGMNMRLVE 204
Query: 535 P---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------------- 571
D+ + + ++++ +G P +ST
Sbjct: 205 TVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTL-TFFPPRNSDDIVEIAKICENYDIP 263
Query: 572 ----------CYRKSQGIEYA-----DSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV 616
+ ++ A D+ + +K LLT ++ D +
Sbjct: 264 HIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIK----- 318
Query: 617 DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGK 676
+ + G + + + + G + ++ KL +
Sbjct: 319 ---EISLSYPG-------RASATP---VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL 365
Query: 677 VRR 679
+
Sbjct: 366 LND 368
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 6e-12
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 146 YCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGT 205
AH EK M + + ++ ++ ++ + G I GT
Sbjct: 127 IVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIG-----IAGT 181
Query: 206 TSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICP 242
T + DN+ E+ +AKE ++++HVD A+ G + P
Sbjct: 182 TELGTIDNIEELSKIAKENNIYIHVDAAFGG--LVIP 216
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 28/152 (18%)
Query: 331 FDVWLHVDGAYAGSSFICP--EFRPFMNGIEY-------ADSFNVNVNKWLLTAFDSSCL 381
++++HVD A+ G + P + + G+ Y DS ++ +K S +
Sbjct: 200 NNIYIHVDAAFGG--LVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGI 257
Query: 382 WVADRYKLTSALVVDPLYL----QHGHEGAIDYRHWGIPLSR-RFRSLKLWFVIRTYGLS 436
D L VD YL Q G +R F + V+R G
Sbjct: 258 LFKDI-GYKRYLDVDAPYLTETRQATILG-----------TRVGFGGACTYAVLRYLGRE 305
Query: 437 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV 468
G +K + E K++ + + +
Sbjct: 306 GQRKIVNECMENTLYLYKKLKENNFKPVIEPI 337
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 39/280 (13%), Positives = 75/280 (26%), Gaps = 72/280 (25%)
Query: 473 SECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKI 532
+E + + + K +K + + AH EK M +
Sbjct: 96 TEANLMALRCIKNIWREKRRKGLSKNEHPKI------IVPITAHFSFEKGREMMDLEYIY 149
Query: 533 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT---------------------- 570
+ ++ ++ ++ + G I GTT
Sbjct: 150 APIKEDYTIDEKFVKDAVEDYDVDGIIG-----IAGTTELGTIDNIEELSKIAKENNIYI 204
Query: 571 ---SCY-----------RKSQGIEY-------ADSFNVNVNKWLLTAFDSSCLWVADRYK 609
+ + K +G+ Y DS ++ +K S + D
Sbjct: 205 HVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDI-G 263
Query: 610 LTSALVVDPLYL----QHGHEGAIDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIR 664
L VD YL Q G +R F + V+R G G +K +
Sbjct: 264 YKRYLDVDAPYLTETRQATILG-----------TRVGFGGACTYAVLRYLGREGQRKIVN 312
Query: 665 RHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNL 704
E K++ + + + L +V +
Sbjct: 313 ECMENTLYLYKKLKENNFKPVIEPI-LNIVAIEDEDYKEV 351
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 2e-09
Identities = 47/276 (17%), Positives = 86/276 (31%), Gaps = 56/276 (20%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
+SE I + LA + + +K K VD+ + C EK A V
Sbjct: 124 VGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNI------VTGANVQVCWEKFARYFEVE 177
Query: 530 LKILEPDDKNSLRGATLRQVMQQ--DETMGYIPFFVSTTLGTT----------SCYRKSQ 577
LK ++ + +Q + + T+ ST G K
Sbjct: 178 LKEVKLSEGY--YVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKET 235
Query: 578 G----------------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYK 609
G + S NV+ +K+ L + ++
Sbjct: 236 GWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKED 295
Query: 610 LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCE 668
L L+ YL GA D + + S+ + + ++ + G G + + E
Sbjct: 296 LPEELIFHINYL-----GA-DQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRE 349
Query: 669 LAKLFEGKVRRDPRFE-ISNDVRLGLVCFRLRSENN 703
+ + + RF +S D + LV F L+ +
Sbjct: 350 NMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSC 385
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 6e-09
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 8/139 (5%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMN-GIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 389
+D +HVD A G + + S NV+ +K+ L + ++ L
Sbjct: 237 WDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDL 296
Query: 390 TSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCEL 448
L+ YL GA D + + S+ + + ++ + G G + + E
Sbjct: 297 PEELIFHINYL-----GA-DQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCREN 350
Query: 449 AKLFEGKVRRDPRFEISND 467
+ + + RF I +
Sbjct: 351 MIVLREGLEKTERFNIVSK 369
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 23/119 (19%)
Query: 146 YCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI---PFFVSTT 202
C EK A V LK ++ + VM + + + V+
Sbjct: 158 VTGANVQVCWEKFARYFEVELKEVKLSEG--------YYVMDPQQAVDMVDENTICVAAI 209
Query: 203 LGTTSCCSFDNLAEIGPVAKEF------DVWLHVDGAYAGSSFICPEFRPFMNGKTSFD 255
LG+T F+++ + + E D +HVD A G PF+ + +D
Sbjct: 210 LGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGF------IAPFLYPELEWD 262
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 102/709 (14%), Positives = 197/709 (27%), Gaps = 250/709 (35%)
Query: 168 ILEPDDKNSLRG--ATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFD 225
I+ D + TL +Q+E + FV L ++ L P+ E
Sbjct: 55 IMSKDAVSGTLRLFWTLLS--KQEEMVQK---FVEEVLRI----NYKFLMS--PIKTE-- 101
Query: 226 VWLHVDGAYAGSSFICPEFR-PFMNGKTSFDNLHLS---PIW------YE-RPSSASECI 274
+ +I E R N F ++S P E RP+ +
Sbjct: 102 ---QRQPSMMTRMYI--EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN---V 153
Query: 275 FVC-ML----SARAQAISKLKKIHPFVDEGVL-LSKLMAYCSKEAHS-------CVETRG 321
+ +L + A + K+ +D + L+ + C+ +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDP 211
Query: 322 HIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNV--NV-NKWLLTAFDS 378
+ S D ++ L + A E R + Y + V NV N AF+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQA-------ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 379 SCLWVADRYKLTS--ALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 436
SC + LT+ V D L ++D+ L+ L
Sbjct: 265 SC-----KILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPD-EVKSL---------- 306
Query: 437 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHP 496
L KY+ C L PR + +P
Sbjct: 307 -LLKYL--DCRPQDL--------PR------------------------EV----LTTNP 327
Query: 497 FVDEGVLLSKLMAYCSKEA-------HSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQV 549
LS + H +K + L +LEP + R++
Sbjct: 328 RR-----LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--------YRKM 374
Query: 550 MQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSF--NVNVNKWLLTAFDSSCLWVADR 607
+ V F + ++ LL S +W
Sbjct: 375 --------FDRLSV---------------------FPPSAHIPTILL-----SLIWFDVI 400
Query: 608 YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHC 667
+VV+ L ++ ++ T + + ++
Sbjct: 401 KS-DVMVVVNKL--------------------HKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 668 ELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727
E + + I + ++LI ++ I G H+
Sbjct: 440 ENEYALHRSIVD--HYNIP----------KTFDSDDLIPPYLDQYFYSHI---GH-HLKN 483
Query: 728 ASQEQNDEVFE--------LQERKRKDDLA----------------YKRSF------FVR 757
+ +F L+++ R D A YK + R
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 758 MLG-LVCFRLRSENNLI-ADHP--LQLGLVCFRLRSENNVIADQNNRKL 802
++ ++ F + E NLI + + L++ L+ +E+ I ++ ++++
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALM-----AEDEAIFEEAHKQV 587
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 12/151 (7%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMN---GIEYADSFNVNVNKWLLTAFDSSCLWVADRY 387
D+ +H+D A G F+ P P + + S + + +K+ L + D
Sbjct: 222 IDIDMHIDAASGG--FLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE 279
Query: 388 KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHC 446
L LV + YL G + I SR + + ++ G G K
Sbjct: 280 ALPQELVFNVDYL-----GG-QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASY 333
Query: 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIF 477
++A ++ + +E R
Sbjct: 334 QVAAYLADEIAKLGPYEFICTGRPDEGIPAV 364
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 60/286 (20%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+SE + +A + + +++ D+ L+ C K A
Sbjct: 108 NTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG-------PVQICWHKFARYWD 160
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQ--DETMGYIPFFVSTTLGTTSC----------YRK 575
V L+ + P L +++++ + T+G +P F T G ++
Sbjct: 161 VELREI-PMRPGQLF-MDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQA 218
Query: 576 SQG----------------------------IEYADSFNVNVNKWLLTAFDSSCLWVADR 607
G + S + + +K+ L + D
Sbjct: 219 DTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDE 278
Query: 608 YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRH 666
L LV + YL G + I SR + + ++ G G K
Sbjct: 279 EALPQELVFNVDYL-----GG-QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNAS 332
Query: 667 CELAKLFEGKVRRDPRFEI----SNDVRLGLVCFRLRSENNLIADQ 708
++A ++ + +E D + VCF+L+ +
Sbjct: 333 YQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTL 378
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 19/110 (17%)
Query: 146 YCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI---PFFVSTT 202
C K A V L+ + P L M + V T
Sbjct: 143 LVCGPVQICWHKFARYWDVELREI-PMRPGQLF-------MDPKRMIEACDENTIGVVPT 194
Query: 203 LGTTSCCSFDNLAEIGPVAKEF------DVWLHVDGAYAGSSFICPEFRP 246
G T +++ + +F D+ +H+D A G F+ P P
Sbjct: 195 FGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG--FLAPFVAP 242
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 891 | |||
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 100.0 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 100.0 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 100.0 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 100.0 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 100.0 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 100.0 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 100.0 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 100.0 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.96 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.94 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.93 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.91 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.86 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.82 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.82 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.82 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.81 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.79 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.75 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.75 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.75 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.75 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.74 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.73 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.71 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.7 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.68 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.67 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.67 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.65 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.64 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.64 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.62 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.62 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.62 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.62 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.6 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.6 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.59 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.58 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.58 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.57 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.57 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.56 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.56 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.56 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.56 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.55 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.54 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.54 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.54 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.53 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.51 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.51 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.51 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.5 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.49 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.48 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.47 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.47 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.46 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.46 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.45 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.45 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.45 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.44 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.43 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.43 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.42 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.42 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.42 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.41 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.41 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.4 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.4 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.4 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.4 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.39 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.38 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.37 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.37 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.37 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.37 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.37 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.34 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.33 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.32 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.32 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.32 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.3 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.29 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.29 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.29 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.28 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.28 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.27 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.26 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.25 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.24 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.24 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.23 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.22 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.22 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.22 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.22 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.21 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.2 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.2 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.19 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.19 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.18 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.18 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.18 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.18 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.17 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.17 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.17 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.16 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.16 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.16 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.15 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.15 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.15 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.15 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.14 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.14 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.13 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.13 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.12 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.11 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.11 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.11 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.1 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.09 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.09 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.08 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.08 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.08 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.08 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.08 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.06 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.06 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.06 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.06 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.05 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.05 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.04 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.03 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.03 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.03 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.03 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.02 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.02 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.02 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.02 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.02 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.01 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.01 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.01 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.01 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.0 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 98.99 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 98.99 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 98.98 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 98.98 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 98.98 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 98.98 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 98.97 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 98.97 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 98.97 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 98.97 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 98.95 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 98.95 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 98.95 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 98.95 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 98.95 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 98.94 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 98.94 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 98.94 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 98.94 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 98.93 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 98.93 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 98.93 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 98.93 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 98.92 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 98.92 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 98.92 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 98.92 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 98.91 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 98.91 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 98.91 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 98.91 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 98.9 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 98.9 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 98.9 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 98.9 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 98.89 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 98.89 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 98.89 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 98.89 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 98.89 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 98.88 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 98.88 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 98.87 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 98.87 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 98.86 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 98.85 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 98.85 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 98.85 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 98.85 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 98.85 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 98.85 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 98.85 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 98.84 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 98.84 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 98.83 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 98.83 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 98.83 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 98.83 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 98.82 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 98.82 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 98.82 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 98.82 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 98.81 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 98.81 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 98.8 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 98.79 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 98.79 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 98.79 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 98.79 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 98.79 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 98.78 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 98.77 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 98.77 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 98.77 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 98.77 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 98.77 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 98.77 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 98.76 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 98.76 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 98.76 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 98.76 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 98.76 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 98.76 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 98.75 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 98.75 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 98.75 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 98.74 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 98.74 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 98.74 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 98.74 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 98.73 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 98.73 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 98.73 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 98.72 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 98.72 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 98.72 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 98.71 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 98.71 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 98.71 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 98.71 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 98.7 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 98.7 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 98.7 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 98.7 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 98.7 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 98.69 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 98.69 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 98.68 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 98.68 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 98.67 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 98.66 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 98.66 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 98.66 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 98.64 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 98.64 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 98.63 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 98.63 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 98.63 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 98.62 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 98.62 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 98.62 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 98.61 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 98.61 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 98.61 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 98.6 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 98.57 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.57 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 98.56 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 98.56 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 98.56 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 98.55 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 98.54 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 98.53 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 98.52 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 98.51 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 98.5 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 98.49 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 98.48 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 98.48 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 98.48 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 98.48 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 98.47 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 98.47 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 98.46 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 98.46 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 98.45 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 98.45 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.44 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 98.44 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 98.44 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 98.44 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 98.44 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 98.43 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 98.43 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 98.43 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 98.42 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 98.42 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 98.41 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 98.41 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 98.41 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 98.4 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 98.4 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 98.39 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 98.38 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 98.38 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 98.37 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 98.37 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 98.37 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 98.37 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 98.37 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 98.36 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 98.36 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 98.35 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 98.34 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 98.34 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 98.34 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 98.33 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 98.32 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 98.32 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 98.32 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 98.32 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 98.32 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.31 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 98.3 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 98.29 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 98.29 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 98.29 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 98.29 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 98.27 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 98.27 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 98.26 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 98.26 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 98.26 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 98.26 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 98.25 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 97.55 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 98.22 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 98.21 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 98.21 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 98.21 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 98.21 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 98.2 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 98.19 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 98.19 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 98.18 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 98.16 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 98.16 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 98.15 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 98.14 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 98.13 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 98.13 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.12 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 98.12 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 98.09 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.08 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 98.08 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 98.07 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 98.06 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 98.06 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 98.05 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 98.04 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 98.04 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 98.04 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 98.03 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 98.02 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 98.02 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 98.02 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.01 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.01 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 98.0 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 98.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 97.99 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 97.96 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 97.96 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 97.95 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 97.93 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 97.93 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 97.93 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 97.91 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 97.89 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 97.89 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 97.89 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 97.89 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 97.1 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 97.88 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 97.87 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 97.87 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 97.85 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 97.84 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 97.82 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 97.82 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 97.81 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 97.77 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 97.7 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 97.67 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 97.65 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 97.65 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 97.64 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 97.64 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 97.61 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 97.6 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 97.6 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 97.58 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 97.58 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 97.51 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 97.51 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 97.49 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 97.48 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 97.47 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 97.46 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 97.43 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 97.42 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 97.42 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 97.41 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 97.4 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 97.37 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 97.34 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 97.34 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 97.06 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 97.03 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 97.02 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 96.86 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 96.81 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 96.65 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 96.61 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 96.17 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 96.12 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 95.97 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 95.93 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 94.83 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 95.63 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 95.49 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 95.44 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 95.35 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 94.1 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 93.94 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 93.09 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 91.26 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 89.36 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 88.37 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 87.99 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 86.14 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 82.75 |
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-52 Score=479.57 Aligned_cols=402 Identities=46% Similarity=0.887 Sum_probs=322.4
Q ss_pred hhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCC-CC
Q psy852 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYP-PQ 82 (891)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~-~~ 82 (891)
+.+.++|++++|+||+|++|++++.++|+++++++++.+|+|+..|..+|.+++||+++++|+++++|+|..+.... +.
T Consensus 60 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~ 139 (475)
T 3k40_A 60 IERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGK 139 (475)
T ss_dssp HHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSS
T ss_pred HHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999997642100 00
Q ss_pred CCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccc-----cCCccccccccCCeEEEecCCCChHHHH
Q psy852 83 GKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKK-----IHPFVDEGVLLSKLMAYCSKEAHSCVEK 157 (891)
Q Consensus 83 ~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~-----~~~~~~~g~~~~~~~v~~S~~~H~Sv~k 157 (891)
++| .+++|||.+ |+..+..+|.+.. ..|.+.++...++++|++|..+|+|+.+
T Consensus 140 ~~g---------------------v~t~ggt~a-nl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~ 197 (475)
T 3k40_A 140 GGG---------------------VIQGTASES-TLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVER 197 (475)
T ss_dssp CEE---------------------EEESCHHHH-HHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHH
T ss_pred CCe---------------------EEcCchHHH-HHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHH
Confidence 112 346788864 6666666776531 1333333334567899999999999999
Q ss_pred HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCC
Q psy852 158 AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 158 aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
++.+.|.+++.||+|++| ||+++|+++|+++.++|..|++|++|+|||.+|++||+++|+++|++||+|+||||||||.
T Consensus 198 ~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~ 276 (475)
T 3k40_A 198 AGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGS 276 (475)
T ss_dssp HHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred HHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHH
Confidence 998888899999999999 9999999999999888888999999999999999999999999999997777777777654
Q ss_pred ccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccc
Q psy852 238 SFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 317 (891)
Q Consensus 238 ~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (891)
.+
T Consensus 277 ~~------------------------------------------------------------------------------ 278 (475)
T 3k40_A 277 AF------------------------------------------------------------------------------ 278 (475)
T ss_dssp GG------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 43
Q ss_pred ccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCc
Q psy852 318 ETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP 397 (891)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~ 397 (891)
++++++..+.|++.+||+++|+|||+++|++||++++|++..+...+...+
T Consensus 279 -----------------------------~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~ 329 (475)
T 3k40_A 279 -----------------------------ICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDP 329 (475)
T ss_dssp -----------------------------GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------
T ss_pred -----------------------------hCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCc
Confidence 334444556677789999999999999999999999998765543333333
Q ss_pred cccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHH
Q psy852 398 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIF 477 (891)
Q Consensus 398 ~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~ 477 (891)
.|+.....
T Consensus 330 ~yl~~~~~------------------------------------------------------------------------ 337 (475)
T 3k40_A 330 LYLKHDMQ------------------------------------------------------------------------ 337 (475)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCcC------------------------------------------------------------------------
Confidence 33311000
Q ss_pred HHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcC
Q psy852 478 VCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG 557 (891)
Q Consensus 478 ~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g 557 (891)
T Consensus 338 -------------------------------------------------------------------------------- 337 (475)
T 3k40_A 338 -------------------------------------------------------------------------------- 337 (475)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc
Q psy852 558 YIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP 637 (891)
Q Consensus 558 ~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~ 637 (891)
+ ..+++.+++++
T Consensus 338 ------------------------------------------~--------------------------~~~~~~~~~~~ 349 (475)
T 3k40_A 338 ------------------------------------------G--------------------------SAPDYRHWQIP 349 (475)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ------------------------------------------C--------------------------CCCCccccccc
Confidence 0 00122356778
Q ss_pred ccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHH
Q psy852 638 LSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDI 717 (891)
Q Consensus 638 ~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L 717 (891)
++|+++++++|++|+.+|.+|+++++++..++++++.+.|+++++|+++.++.+++|+|++.+. +..+.++.++|
T Consensus 350 ~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~-----~~~~~~l~~~L 424 (475)
T 3k40_A 350 LGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS-----NERNEALLKRI 424 (475)
T ss_dssp CCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSC-----HHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCc-----hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999765 55788999999
Q ss_pred HhCCcEEEeeccccCCeEE-EEec-CCCCHHHHHHHHHHHHHHHH
Q psy852 718 NASGRLHMVPASQEQNDEV-FELQ-ERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 718 ~~~G~~~~s~s~~~g~~~l-~sv~-~~tT~edId~li~~L~ei~~ 760 (891)
+++|.++++++...+...+ +++. +++|++||+++++.|+++..
T Consensus 425 ~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 469 (475)
T 3k40_A 425 NGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAAD 469 (475)
T ss_dssp HHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999988888888888888 9865 57899999999999998874
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=477.63 Aligned_cols=403 Identities=45% Similarity=0.852 Sum_probs=333.0
Q ss_pred hhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCC--CC
Q psy852 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMY--PP 81 (891)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~--~~ 81 (891)
+.+.++|++++|+||||++|++++.++|++++++++..+|+|+..|..+|.+++||+++++|+++++|+|..+... ..
T Consensus 65 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~ 144 (481)
T 4e1o_A 65 IERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSS 144 (481)
T ss_dssp HHHHTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTC
T ss_pred HHHHHhcCCCCCCCCCeeEeCCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCC
Confidence 4566899999999999999999999999999999999999999999999999999999999999999999764210 00
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccc-----cCCccccccccCCeEEEecCCCChHHH
Q psy852 82 QGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKK-----IHPFVDEGVLLSKLMAYCSKEAHSCVE 156 (891)
Q Consensus 82 ~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~-----~~~~~~~g~~~~~~~v~~S~~~H~Sv~ 156 (891)
.+.| .+++|||. +|+..+..+|++.. ..|.+.+....++++||+|+.+|+|+.
T Consensus 145 ~~~g---------------------~~~~ggt~-an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 202 (481)
T 4e1o_A 145 QGGG---------------------VLQSTVSE-STLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE 202 (481)
T ss_dssp BCEE---------------------EEESCHHH-HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHH
T ss_pred CCce---------------------EEeCchHH-HHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHH
Confidence 0112 24678875 56666666766521 134444334457889999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccC
Q psy852 157 KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 157 kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG 236 (891)
|++.+++.+++.||+|++|+||+++|+++|+++.++|..|++|++|+|||.+|++|||++|+++|++||+|+||||||||
T Consensus 203 ~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~ 282 (481)
T 4e1o_A 203 KAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAG 282 (481)
T ss_dssp HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGG
T ss_pred HHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHH
Confidence 99988889999999999999999999999999988899999999999999999999999999999999776666666655
Q ss_pred CccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccc
Q psy852 237 SSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC 316 (891)
Q Consensus 237 ~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (891)
..+
T Consensus 283 ~~~----------------------------------------------------------------------------- 285 (481)
T 4e1o_A 283 TAF----------------------------------------------------------------------------- 285 (481)
T ss_dssp GGG-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 443
Q ss_pred cccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccC
Q psy852 317 VETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD 396 (891)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~ 396 (891)
++++++..+.|++.+||+++|+|||+++|++||++++|++..+...+...
T Consensus 286 ------------------------------~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~ 335 (481)
T 4e1o_A 286 ------------------------------LCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVN 335 (481)
T ss_dssp ------------------------------GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCC
T ss_pred ------------------------------hChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCC
Confidence 34444555667788999999999999999999999999876554444444
Q ss_pred ccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhH
Q psy852 397 PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECI 476 (891)
Q Consensus 397 ~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean 476 (891)
+.|+.....
T Consensus 336 ~~yl~~~~~----------------------------------------------------------------------- 344 (481)
T 4e1o_A 336 PIYLRHANS----------------------------------------------------------------------- 344 (481)
T ss_dssp CGGGCCTTT-----------------------------------------------------------------------
T ss_pred chhccCccc-----------------------------------------------------------------------
Confidence 444432100
Q ss_pred HHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhc
Q psy852 477 FVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM 556 (891)
Q Consensus 477 ~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~ 556 (891)
T Consensus 345 -------------------------------------------------------------------------------- 344 (481)
T 4e1o_A 345 -------------------------------------------------------------------------------- 344 (481)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 557 GYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 557 g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
...+++.++++
T Consensus 345 ---------------------------------------------------------------------~~~~~~~~~~~ 355 (481)
T 4e1o_A 345 ---------------------------------------------------------------------GVATDFMHWQI 355 (481)
T ss_dssp ---------------------------------------------------------------------TTSCCGGGGSS
T ss_pred ---------------------------------------------------------------------CCCCCcccccc
Confidence 00112345677
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHH
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLED 716 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~ 716 (891)
+++|+++++++|++++.+|.+|+++++++..+++++|.+.|+++++|+++.++.+++|+|++.+. +..+.++.++
T Consensus 356 ~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-----~~~~~~l~~~ 430 (481)
T 4e1o_A 356 PLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGP-----NSLTENVLKE 430 (481)
T ss_dssp SSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSC-----HHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCc-----hHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999989999999999765 5678899999
Q ss_pred HHhCCcEEEeeccccCCeEE-EEec-CCCCHHHHHHHHHHHHHHHH
Q psy852 717 INASGRLHMVPASQEQNDEV-FELQ-ERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 717 L~~~G~~~~s~s~~~g~~~l-~sv~-~~tT~edId~li~~L~ei~~ 760 (891)
|.++|.++++++...+...+ +++. ++||++||+++++.|+++..
T Consensus 431 L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 476 (481)
T 4e1o_A 431 IAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT 476 (481)
T ss_dssp HHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999888888888888888 9865 57899999999999998874
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-46 Score=433.02 Aligned_cols=400 Identities=22% Similarity=0.345 Sum_probs=320.9
Q ss_pred hHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q psy852 6 HFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKN 85 (891)
Q Consensus 6 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g 85 (891)
+.+++..++|+||+|++|++++.+.|++++++++..+|+|...|..+|.++++|.++++|+++++|++.+. .+|
T Consensus 84 ~~~~~~~~~~~~p~f~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~------~~~ 157 (511)
T 3vp6_A 84 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKD------GDG 157 (511)
T ss_dssp HHHHHTSCCTTSTTEESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSS------CEE
T ss_pred HHHhhccCCCCCCCceEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCC------Cce
Confidence 34455667889999999999999999999999999999999999999999999999999999999998542 122
Q ss_pred CCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccc-ccc-ccCCeEEEecCCCChHHHHHHHHcC
Q psy852 86 ATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVD-EGV-LLSKLMAYCSKEAHSCVEKAAMMAF 163 (891)
Q Consensus 86 ~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~-~g~-~~~~~~v~~S~~~H~Sv~kaa~~~~ 163 (891)
+ +++|||.+ |...+..+|.+. .|.++ +|. ..++.+|++|..+|+|+.+++.+.+
T Consensus 158 ~---------------------~t~ggt~a-~~~al~~a~~~~--~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g 213 (511)
T 3vp6_A 158 I---------------------FSPGGAIS-NMYSIMAARYKY--FPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALG 213 (511)
T ss_dssp E---------------------EESSHHHH-HHHHHHHHHHHH--CTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTT
T ss_pred E---------------------ECCchHHH-HHHHHHHHHHHh--hhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcC
Confidence 2 45788764 555555566542 12222 222 1357789999999999999998766
Q ss_pred C---eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccc
Q psy852 164 V---RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFI 240 (891)
Q Consensus 164 ~---~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~ 240 (891)
. +++.|++|++|+||+++|+++|+++.++|..|.+|+++.|+|.+|++|||++|+++|++||+|+|||+||||..
T Consensus 214 ~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~-- 291 (511)
T 3vp6_A 214 FGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGL-- 291 (511)
T ss_dssp SCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGG--
T ss_pred CCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhH--
Confidence 5 89999999999999999999999998889999999999999999999999999999999976666666665544
Q ss_pred cCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccc
Q psy852 241 CPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETR 320 (891)
Q Consensus 241 ~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (891)
T Consensus 292 -------------------------------------------------------------------------------- 291 (511)
T 3vp6_A 292 -------------------------------------------------------------------------------- 291 (511)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCcccc
Q psy852 321 GHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYL 400 (891)
Q Consensus 321 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~ 400 (891)
+++++++..+.|++.+||+++|+|||+++|++||++++|++..+...+...+.|+
T Consensus 292 -------------------------~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl 346 (511)
T 3vp6_A 292 -------------------------LMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYL 346 (511)
T ss_dssp -------------------------GGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTT
T ss_pred -------------------------hhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccc
Confidence 3445555666777789999999999999999999999998765554444555555
Q ss_pred CCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHH
Q psy852 401 QHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCM 480 (891)
Q Consensus 401 ~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al 480 (891)
......
T Consensus 347 ~~~~~~-------------------------------------------------------------------------- 352 (511)
T 3vp6_A 347 FQQDKH-------------------------------------------------------------------------- 352 (511)
T ss_dssp CCSSCS--------------------------------------------------------------------------
T ss_pred cCcccc--------------------------------------------------------------------------
Confidence 332000
Q ss_pred HHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCcc
Q psy852 481 LAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIP 560 (891)
Q Consensus 481 ~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip 560 (891)
T Consensus 353 -------------------------------------------------------------------------------- 352 (511)
T 3vp6_A 353 -------------------------------------------------------------------------------- 352 (511)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccc
Q psy852 561 FFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR 640 (891)
Q Consensus 561 ~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SR 640 (891)
+ ...++..+++++++|
T Consensus 353 ------------------------------------~----------------------------~~~~~~~~~~~~~~r 368 (511)
T 3vp6_A 353 ------------------------------------Y----------------------------DVSYDTGDKAIQCGR 368 (511)
T ss_dssp ------------------------------------S----------------------------CGGGCCGGGSSCSSC
T ss_pred ------------------------------------c----------------------------ccccCccCCCCCCCC
Confidence 0 001123456778899
Q ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC--CCceeEEEEEecCCcc----------hhhhh
Q psy852 641 RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN--DVRLGLVCFRLRSENN----------LIADQ 708 (891)
Q Consensus 641 r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~--~~~~~iV~Fr~~~~~~----------~~~d~ 708 (891)
+++++++|++|+.+|.+|+++++++..+++++|.+.|++.|+|+++. +|..++|+|++.|... ..++.
T Consensus 369 ~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~ 448 (511)
T 3vp6_A 369 HVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHK 448 (511)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 6889999999976532 13445
Q ss_pred hHHHHHHHHHhCCcEEEeeccccCC-eEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 709 NNRKLLEDINASGRLHMVPASQEQN-DEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 709 ln~~L~~~L~~~G~~~~s~s~~~g~-~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
.+.++.++|.++|++++......++ ..+ +++ ++.+|.+||++++++|+++.+
T Consensus 449 ~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 449 VAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 6778999999999877765444443 356 887 779999999999999998873
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=426.10 Aligned_cols=405 Identities=49% Similarity=0.906 Sum_probs=316.8
Q ss_pred hhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCC-CC
Q psy852 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYP-PQ 82 (891)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~-~~ 82 (891)
+.+.+.|+.++|+||+|++|++++.+.|+.++++++..+|+|...|..+|.++++|.++++|+++++|++..+.... +.
T Consensus 60 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~ 139 (486)
T 1js3_A 60 VEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGE 139 (486)
T ss_dssp HHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCS
T ss_pred HHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCC
Confidence 44557899999999999999999999999999999999999999999999999999999999999999986532100 00
Q ss_pred CCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc-----CCccccccccCCeEEEecCCCChHHHH
Q psy852 83 GKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI-----HPFVDEGVLLSKLMAYCSKEAHSCVEK 157 (891)
Q Consensus 83 ~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~-----~~~~~~g~~~~~~~v~~S~~~H~Sv~k 157 (891)
+. +.+|+|||++ |...+..+|..... .+.+.+....++.+|++|..+|+|+.+
T Consensus 140 ~~---------------------~v~t~ggTeA-~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~ 197 (486)
T 1js3_A 140 GG---------------------GVIQGSASEA-TLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVER 197 (486)
T ss_dssp CE---------------------EEEESCHHHH-HHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHH
T ss_pred CC---------------------eEEcCCcHHH-HHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHH
Confidence 11 2246788854 44444445543100 000011111235679999999999999
Q ss_pred HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCC
Q psy852 158 AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 158 aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
++.+.|.+++.||+|++|+||+++|+++|++++++|..|++|++|.|||.+|++||+++|+++|+++|+|+|||+||||+
T Consensus 198 ~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~ 277 (486)
T 1js3_A 198 AGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGS 277 (486)
T ss_dssp HHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred HHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHH
Confidence 99887889999999999999999999999999888999999999999999999999999999999998777777777665
Q ss_pred ccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccc
Q psy852 238 SFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 317 (891)
Q Consensus 238 ~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (891)
.+.+
T Consensus 278 ~~~~---------------------------------------------------------------------------- 281 (486)
T 1js3_A 278 AFIC---------------------------------------------------------------------------- 281 (486)
T ss_dssp GGGS----------------------------------------------------------------------------
T ss_pred HHHC----------------------------------------------------------------------------
Confidence 5433
Q ss_pred ccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCc
Q psy852 318 ETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP 397 (891)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~ 397 (891)
++++..+.|++.+|++++|+|||+++|++||++++|++..+...+...+
T Consensus 282 -------------------------------~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~ 330 (486)
T 1js3_A 282 -------------------------------PEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDP 330 (486)
T ss_dssp -------------------------------TTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC---
T ss_pred -------------------------------HHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCc
Confidence 3333444566678999999999999999999999998754333332223
Q ss_pred cccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHH
Q psy852 398 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIF 477 (891)
Q Consensus 398 ~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~ 477 (891)
.|+.....
T Consensus 331 ~yl~~~~~------------------------------------------------------------------------ 338 (486)
T 1js3_A 331 VYLKHSHQ------------------------------------------------------------------------ 338 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhCCCcc------------------------------------------------------------------------
Confidence 33321100
Q ss_pred HHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcC
Q psy852 478 VCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG 557 (891)
Q Consensus 478 ~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g 557 (891)
.
T Consensus 339 --------------------------------------------------------------------------~----- 339 (486)
T 1js3_A 339 --------------------------------------------------------------------------G----- 339 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------c-----
Confidence 0
Q ss_pred CccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc
Q psy852 558 YIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP 637 (891)
Q Consensus 558 ~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~ 637 (891)
. ...+++.+++++
T Consensus 340 -------------------------------------------------~------------------~~~~~~~~~~~~ 352 (486)
T 1js3_A 340 -------------------------------------------------S------------------GLITDYRHWQLP 352 (486)
T ss_dssp -------------------------------------------------C------------------CSCCCGGGSSSC
T ss_pred -------------------------------------------------c------------------cCCCCccccCCC
Confidence 0 001122345677
Q ss_pred ccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHH
Q psy852 638 LSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDI 717 (891)
Q Consensus 638 ~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L 717 (891)
++|+++++++|++++.+|.+|+++++++..++++++.+.|+++++++++.++..++++|++.+. +..++++.++|
T Consensus 353 ~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~-----~~~~~~l~~~L 427 (486)
T 1js3_A 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS-----DGLNEALLERI 427 (486)
T ss_dssp SCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSC-----HHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecCh-----HHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999888899999999754 45678899999
Q ss_pred HhCCcEEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 718 NASGRLHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 718 ~~~G~~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
.++|+++++++...+..++ +++ ++++|++||+++++.|++++.
T Consensus 428 ~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 472 (486)
T 1js3_A 428 NSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA 472 (486)
T ss_dssp HHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999887777777777778 986 668999999999999998874
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=412.12 Aligned_cols=397 Identities=23% Similarity=0.331 Sum_probs=309.9
Q ss_pred hhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy852 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQG 83 (891)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~ 83 (891)
+.+.++|++++|+||+|++|++++...++++++++...+|+|...|..+|.++++|..+++|+++++|+++..
T Consensus 87 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~------- 159 (497)
T 2qma_A 87 VAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKA------- 159 (497)
T ss_dssp HHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTC-------
T ss_pred HHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCC-------
Confidence 4567899999999999999999999999999999999999999999999999999999999999999997521
Q ss_pred CCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc---CCccc-cccc--cCCeEEEecCCCChHHHH
Q psy852 84 KNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI---HPFVD-EGVL--LSKLMAYCSKEAHSCVEK 157 (891)
Q Consensus 84 ~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~---~~~~~-~g~~--~~~~~v~~S~~~H~Sv~k 157 (891)
+++ +++|||.+ |...+..+|.+... .+..+ .|.. .++..|++|..+|+|+.+
T Consensus 160 ~~~---------------------~t~ggt~a-~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~ 217 (497)
T 2qma_A 160 DGI---------------------FTSGGTQS-NQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQK 217 (497)
T ss_dssp EEE---------------------EESSHHHH-HHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHH
T ss_pred CeE---------------------EcCCchHH-HHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHH
Confidence 122 45788764 44445556543110 01111 1211 135689999999999999
Q ss_pred HHHHcCC---eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 158 AAMMAFV---RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 158 aa~~~~~---~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++.+.+. +++.||+|++|+||+++|+++|+++.++|.+|++|++|.|||.+|++||+++|+++|++||+|+|||+||
T Consensus 218 ~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~ 297 (497)
T 2qma_A 218 SASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAY 297 (497)
T ss_dssp HHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETT
T ss_pred HHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhh
Confidence 9976543 8999999999999999999999988777777889999999999999999999999999998888888888
Q ss_pred cCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccc
Q psy852 235 AGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH 314 (891)
Q Consensus 235 GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (891)
||+...
T Consensus 298 ~~~~~~-------------------------------------------------------------------------- 303 (497)
T 2qma_A 298 GGALIL-------------------------------------------------------------------------- 303 (497)
T ss_dssp GGGGGG--------------------------------------------------------------------------
T ss_pred hHHHHh--------------------------------------------------------------------------
Confidence 664432
Q ss_pred cccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcc
Q psy852 315 SCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV 394 (891)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~ 394 (891)
++ ++..+++++.+|++++|+|||+++|++||++++|++..+. .+.
T Consensus 304 ---------------------------------~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~-~~~ 348 (497)
T 2qma_A 304 ---------------------------------SS-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFK-FLL 348 (497)
T ss_dssp ---------------------------------ST-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGG-GGC
T ss_pred ---------------------------------Cc-chHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHH-Hhc
Confidence 22 2334566777899999999999999999999999875332 121
Q ss_pred cCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcch
Q psy852 395 VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASE 474 (891)
Q Consensus 395 ~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggse 474 (891)
..+.|+.... +
T Consensus 349 ~~~~yl~~~~--------------------------------------------------------------------~- 359 (497)
T 2qma_A 349 HHADYLNREH--------------------------------------------------------------------D- 359 (497)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCchhcCCcc--------------------------------------------------------------------c-
Confidence 1111211000 0
Q ss_pred hHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhh
Q psy852 475 CIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDE 554 (891)
Q Consensus 475 an~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~ 554 (891)
T Consensus 360 -------------------------------------------------------------------------------- 359 (497)
T 2qma_A 360 -------------------------------------------------------------------------------- 359 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 555 TMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 555 ~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
..+++.++
T Consensus 360 ------------------------------------------------------------------------~~~~~~~~ 367 (497)
T 2qma_A 360 ------------------------------------------------------------------------ELPNLVDK 367 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------------------cCCCcccc
Confidence 00012234
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHH
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLL 714 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~ 714 (891)
+++++|+++++++|++++.+|.+|+++++++..+++++|.+.|+++++++++.++..++|+|++.+.. ...+.+++.+.
T Consensus 368 ~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~-~~~~~l~~~l~ 446 (497)
T 2qma_A 368 SIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHET-ADLDELNKALR 446 (497)
T ss_dssp --CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSS-SCHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCc-cCHHHHHHHHH
Confidence 56679999999999999999999999999999999999999999999999988889999999997642 12345678889
Q ss_pred HHHHhCCcEEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 715 EDINASGRLHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 715 ~~L~~~G~~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
+.|.++|+++..++...+..++ +++ ++.+|++||+++++.|+++..
T Consensus 447 ~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~ 494 (497)
T 2qma_A 447 LEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAV 494 (497)
T ss_dssp HHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999987776666777778 997 889999999999999998763
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=408.36 Aligned_cols=399 Identities=22% Similarity=0.345 Sum_probs=312.1
Q ss_pred hHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q psy852 6 HFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKN 85 (891)
Q Consensus 6 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g 85 (891)
+.+++...+++||+|++|++++..++++++++++..+|+|...|..+|.++++|.++++|+++++|++.+. .++
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~------~~~ 154 (504)
T 2okj_A 81 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKD------GDG 154 (504)
T ss_dssp HHHHHTSCCTTCTTEESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSS------CEE
T ss_pred HHHhhccCCCCCCCEEEEccCCCCHHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCC------CCE
Confidence 44556666666999999999999999999999999999999999999999999999999999999998421 112
Q ss_pred CCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccc-cccc-cCCeEEEecCCCChHHHHHHHHcC
Q psy852 86 ATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVD-EGVL-LSKLMAYCSKEAHSCVEKAAMMAF 163 (891)
Q Consensus 86 ~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~-~g~~-~~~~~v~~S~~~H~Sv~kaa~~~~ 163 (891)
.+++|||. ++...+..+|.+. .|.++ .|.. .++++|++|..+|+|+.+++.+.+
T Consensus 155 ---------------------~~t~ggte-a~~~al~~~~~~~--~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g 210 (504)
T 2okj_A 155 ---------------------IFSPGGAI-SNMYSIMAARYKY--FPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALG 210 (504)
T ss_dssp ---------------------EEESSHHH-HHHHHHHHHHHHH--CTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTT
T ss_pred ---------------------EEeCCcHH-HHHHHHHHHHHHH--hhHHhhcCccccCCeEEEECCcchHHHHHHHHHcC
Confidence 24578875 4555555566532 12111 1211 235689999999999999997654
Q ss_pred C---eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccc
Q psy852 164 V---RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFI 240 (891)
Q Consensus 164 ~---~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~ 240 (891)
. +++.||+|++|+||+++|+++|+++.++|..|.+|++|.|||.+|++||+++|+++|+++|+|+|||+||||+.+.
T Consensus 211 ~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~ 290 (504)
T 2okj_A 211 FGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLM 290 (504)
T ss_dssp SCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred CCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHh
Confidence 4 8999999999999999999999988888888999999999999999999999999999998777777777665443
Q ss_pred cCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccc
Q psy852 241 CPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETR 320 (891)
Q Consensus 241 ~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (891)
T Consensus 291 -------------------------------------------------------------------------------- 290 (504)
T 2okj_A 291 -------------------------------------------------------------------------------- 290 (504)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCcccc
Q psy852 321 GHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYL 400 (891)
Q Consensus 321 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~ 400 (891)
+++++..++|++.+|++++|+|||+++|++||++++|++..+...+...++|+
T Consensus 291 ---------------------------~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l 343 (504)
T 2okj_A 291 ---------------------------SRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYL 343 (504)
T ss_dssp ---------------------------CTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSS
T ss_pred ---------------------------CHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccc
Confidence 33344445666679999999999999999999999998644433333344444
Q ss_pred CCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHH
Q psy852 401 QHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCM 480 (891)
Q Consensus 401 ~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al 480 (891)
.+....
T Consensus 344 ~~~~~~-------------------------------------------------------------------------- 349 (504)
T 2okj_A 344 FQPDKQ-------------------------------------------------------------------------- 349 (504)
T ss_dssp CCSCCS--------------------------------------------------------------------------
T ss_pred cCCccc--------------------------------------------------------------------------
Confidence 221000
Q ss_pred HHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCcc
Q psy852 481 LAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIP 560 (891)
Q Consensus 481 ~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip 560 (891)
T Consensus 350 -------------------------------------------------------------------------------- 349 (504)
T 2okj_A 350 -------------------------------------------------------------------------------- 349 (504)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccc
Q psy852 561 FFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR 640 (891)
Q Consensus 561 ~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SR 640 (891)
+ ...+++.+++++++|
T Consensus 350 ------------------------------------~----------------------------~~~~~~~~~~~~~~r 365 (504)
T 2okj_A 350 ------------------------------------Y----------------------------DVSYDTGDKAIQCGR 365 (504)
T ss_dssp ------------------------------------S----------------------------CGGGCCGGGSSCSSC
T ss_pred ------------------------------------c----------------------------cCcCCcccCCCCCCC
Confidence 0 001123346678899
Q ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC--CCceeEEEEEecCCc----------chhhhh
Q psy852 641 RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN--DVRLGLVCFRLRSEN----------NLIADQ 708 (891)
Q Consensus 641 r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~--~~~~~iV~Fr~~~~~----------~~~~d~ 708 (891)
|++++++|++++.+|.+|+++++++..+++++|.+.|+++++++++. +|..++|+|++.+.. .+..+.
T Consensus 366 r~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 445 (504)
T 2okj_A 366 HVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHK 445 (504)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTT
T ss_pred CccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999987 578899999986531 112344
Q ss_pred hHHHHHHHHHhCCcEEEeeccccCC-eEE-EEec-CCCCHHHHHHHHHHHHHHH
Q psy852 709 NNRKLLEDINASGRLHMVPASQEQN-DEV-FELQ-ERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 709 ln~~L~~~L~~~G~~~~s~s~~~g~-~~l-~sv~-~~tT~edId~li~~L~ei~ 759 (891)
.+..+.++|.++|++++.++...+. .++ +++. +.+|++||+++++.|++++
T Consensus 446 ~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~ 499 (504)
T 2okj_A 446 VAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLG 499 (504)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5778999999999877776655554 467 9985 7999999999999999876
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-42 Score=398.80 Aligned_cols=398 Identities=23% Similarity=0.353 Sum_probs=307.5
Q ss_pred hhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q psy852 5 FHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGK 84 (891)
Q Consensus 5 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~ 84 (891)
++.+++..++++||+|++|++++..++++++++++...|+|...|..+|.++++|.++.+|+++++|++.. .
T Consensus 96 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~--------~ 167 (515)
T 2jis_A 96 CRAVIRYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSG--------D 167 (515)
T ss_dssp HHHHHHHSCCTTSTTEESSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSC--------E
T ss_pred HHHHhcCCCCCCCCCeEEEeeCCCCHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCC--------C
Confidence 34455666666799999999999999999999999999999999999999999999999999999999832 1
Q ss_pred CCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccc-ccc-ccCCeEEEecCCCChHHHHHHHHc
Q psy852 85 NATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVD-EGV-LLSKLMAYCSKEAHSCVEKAAMMA 162 (891)
Q Consensus 85 g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~-~g~-~~~~~~v~~S~~~H~Sv~kaa~~~ 162 (891)
+ .+++|||.+ |...+..+|.+. .|.++ .|. ..++++|++|..+|+|+.+++.+.
T Consensus 168 ~---------------------~~t~ggtea-~~~al~~ar~~~--~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~ 223 (515)
T 2jis_A 168 G---------------------IFCPGGSIS-NMYAVNLARYQR--YPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL 223 (515)
T ss_dssp E---------------------EEESSHHHH-HHHHHHHHHHHH--CTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT
T ss_pred e---------------------EEcCCcHHH-HHHHHHHHHHHH--hhHHhhcCccccCCeEEEECCCccHHHHHHHHHc
Confidence 2 245788754 555666666532 11111 121 124668999999999999999765
Q ss_pred CC---eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCcc
Q psy852 163 FV---RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSF 239 (891)
Q Consensus 163 ~~---~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~ 239 (891)
+. +++.||+|++|+||+++|+++|+++.++|..|.+|+++.|||.+|++||+++|+++|+++|+|+|||+||||+.+
T Consensus 224 g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~ 303 (515)
T 2jis_A 224 GLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVL 303 (515)
T ss_dssp TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred CCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHH
Confidence 55 899999999999999999999998887888899999999999999999999999999999877777777765544
Q ss_pred ccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccc
Q psy852 240 ICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVET 319 (891)
Q Consensus 240 ~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (891)
.
T Consensus 304 ~------------------------------------------------------------------------------- 304 (515)
T 2jis_A 304 L------------------------------------------------------------------------------- 304 (515)
T ss_dssp G-------------------------------------------------------------------------------
T ss_pred h-------------------------------------------------------------------------------
Confidence 3
Q ss_pred ccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEecc-ccchhhcccCcc
Q psy852 320 RGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADR-YKLTSALVVDPL 398 (891)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~-~~~~~~~~~~~~ 398 (891)
+++++..+++++.+|++++|+|||+++|++||++++|++ ..+...+...++
T Consensus 305 ----------------------------~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~ 356 (515)
T 2jis_A 305 ----------------------------SQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQAS 356 (515)
T ss_dssp ----------------------------CTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---
T ss_pred ----------------------------ChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCch
Confidence 333344456677799999999999999999999999986 333322222333
Q ss_pred ccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHH
Q psy852 399 YLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFV 478 (891)
Q Consensus 399 y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~ 478 (891)
|+.+....
T Consensus 357 yl~~~~~~------------------------------------------------------------------------ 364 (515)
T 2jis_A 357 YLFQQDKF------------------------------------------------------------------------ 364 (515)
T ss_dssp ------CC------------------------------------------------------------------------
T ss_pred hccCCccc------------------------------------------------------------------------
Confidence 33211000
Q ss_pred HHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCC
Q psy852 479 CMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGY 558 (891)
Q Consensus 479 al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ 558 (891)
T Consensus 365 -------------------------------------------------------------------------------- 364 (515)
T 2jis_A 365 -------------------------------------------------------------------------------- 364 (515)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccc
Q psy852 559 IPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPL 638 (891)
Q Consensus 559 ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~ 638 (891)
. ...++.+++++++
T Consensus 365 --------------------------------------~----------------------------~~~~~~~~~~~~~ 378 (515)
T 2jis_A 365 --------------------------------------Y----------------------------DVALDTGDKVVQC 378 (515)
T ss_dssp --------------------------------------S----------------------------CGGGCCGGGCSCS
T ss_pred --------------------------------------c----------------------------cccCCCCCCCCCC
Confidence 0 0001223456678
Q ss_pred cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc------c----hhhhh
Q psy852 639 SRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN------N----LIADQ 708 (891)
Q Consensus 639 SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~------~----~~~d~ 708 (891)
+|+++++++|++++.+|.+|+++++++..+++++|.+.|+++++++++.++..++|+|++.+.. . ..++.
T Consensus 379 ~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~ 458 (515)
T 2jis_A 379 GRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSK 458 (515)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHT
T ss_pred CCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888899999986431 1 12233
Q ss_pred hHHHHHHHHHhCCcEEEeeccccC-CeEE-EEe-cCCCCHHHHHHHHHHHHHHH
Q psy852 709 NNRKLLEDINASGRLHMVPASQEQ-NDEV-FEL-QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 709 ln~~L~~~L~~~G~~~~s~s~~~g-~~~l-~sv-~~~tT~edId~li~~L~ei~ 759 (891)
.+..+.+.|.++|.++++.+...+ ..++ +++ ++++|++|||++++.|++++
T Consensus 459 ~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~ 512 (515)
T 2jis_A 459 VAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLG 512 (515)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 455688889999988766554444 3467 998 78999999999999998876
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=319.97 Aligned_cols=382 Identities=14% Similarity=0.120 Sum_probs=277.9
Q ss_pred hhHh-hccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy852 5 FHFL-SHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQG 83 (891)
Q Consensus 5 ~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~ 83 (891)
.+.+ .++.++|.||+|++. ... ..+.+++...+|.|...|..+|.+.++|.++.+|+++++|++..... ..
T Consensus 33 ~~~~~~~~~~~~~~~~f~~~---~~~--~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~---~~ 104 (452)
T 2dgk_A 33 NDELYLDGNARQNLATFCQT---WDD--ENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNG---QA 104 (452)
T ss_dssp HHHGGGSCCCTTBCSCCSCC---CCC--HHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTS---CC
T ss_pred HHHhcCCCCCccCCCCeeCC---Cch--HHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCccccc---CC
Confidence 3444 588899999999871 111 35789999999998888999999999999999999999999865200 00
Q ss_pred CCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcC
Q psy852 84 KNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 163 (891)
Q Consensus 84 ~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~ 163 (891)
.+ .+++|||... ...+..++.+.... ....|....+..|++|. +|+|+.+++.+.|
T Consensus 105 ~~---------------------~~t~ggtea~-~~al~a~~~~~~~~-~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G 160 (452)
T 2dgk_A 105 VG---------------------TNTIGSSEAC-MLGGMAMKWRWRKR-MEAAGKPTDKPNLVCGP-VQICWHKFARYWD 160 (452)
T ss_dssp EE---------------------EEESSHHHHH-HHHHHHHHHHHHHH-HHHTTCCCSCCEEEESS-CCHHHHHHHHHTT
T ss_pred ce---------------------EEeCCHHHHH-HHHHHHHHHHHHHH-HHhcCCCCCCcEEEECC-CcHHHHHHHHHcC
Confidence 11 2457887654 33333333321000 00011101234588888 9999999998888
Q ss_pred CeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc------CCceeeeccccC
Q psy852 164 VRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF------DVWLHVDGAYAG 236 (891)
Q Consensus 164 ~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~------~~~lHvDaA~GG 236 (891)
.+++.||+|+ +|+||+++|+++|+++ |.+|+++.+||.+|.+||+++|+++|+++ ++|+|||+||||
T Consensus 161 ~~v~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~ 234 (452)
T 2dgk_A 161 VELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG 234 (452)
T ss_dssp CEEEECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGG
T ss_pred ceEEEEecCCCCCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHH
Confidence 8999999987 7999999999999764 57999999999999999999999999996 888888888876
Q ss_pred CccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccc
Q psy852 237 SSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC 316 (891)
Q Consensus 237 ~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (891)
+..- |
T Consensus 235 ~~~~------------------------------------------------------~--------------------- 239 (452)
T 2dgk_A 235 FLAP------------------------------------------------------F--------------------- 239 (452)
T ss_dssp GTHH------------------------------------------------------H---------------------
T ss_pred HHHH------------------------------------------------------h---------------------
Confidence 5420 0
Q ss_pred cccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccC
Q psy852 317 VETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD 396 (891)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~ 396 (891)
+++.....+ .+..+|++++|+|||+++|+++|++++|++..+...+...
T Consensus 240 ------------------------------~~~~~~~~~-~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~ 288 (452)
T 2dgk_A 240 ------------------------------VAPDIVWDF-RLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFN 288 (452)
T ss_dssp ------------------------------HCTTCCCST-TSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEE
T ss_pred ------------------------------hCccchhhc-CCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccC
Confidence 011110111 1346899999999999999999999998764332111111
Q ss_pred ccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhH
Q psy852 397 PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECI 476 (891)
Q Consensus 397 ~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean 476 (891)
+.|+..
T Consensus 289 ~~~~~~-------------------------------------------------------------------------- 294 (452)
T 2dgk_A 289 VDYLGG-------------------------------------------------------------------------- 294 (452)
T ss_dssp ECCTTC--------------------------------------------------------------------------
T ss_pred ccccCC--------------------------------------------------------------------------
Confidence 111100
Q ss_pred HHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhc
Q psy852 477 FVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM 556 (891)
Q Consensus 477 ~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~ 556 (891)
T Consensus 295 -------------------------------------------------------------------------------- 294 (452)
T 2dgk_A 295 -------------------------------------------------------------------------------- 294 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 557 GYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 557 g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
....+++
T Consensus 295 -------------------------------------------------------------------------~~~~~~~ 301 (452)
T 2dgk_A 295 -------------------------------------------------------------------------QIGTFAI 301 (452)
T ss_dssp -------------------------------------------------------------------------CEEECCS
T ss_pred -------------------------------------------------------------------------CCCCccc
Confidence 0001234
Q ss_pred cccccc-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC----CceeEEEEEecCCcchhhhhh-H
Q psy852 637 PLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND----VRLGLVCFRLRSENNLIADQN-N 710 (891)
Q Consensus 637 ~~SRr~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~----~~~~iV~Fr~~~~~~~~~d~l-n 710 (891)
+++|++ .++++|++++.+|.+|+++++++..+++++|.+.|+++++++++.+ +..++|+|++.+... +.. .
T Consensus 302 ~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~ 378 (452)
T 2dgk_A 302 NFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED---PGYTL 378 (452)
T ss_dssp CCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCC---CSCCH
T ss_pred CCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCccc---ccCCH
Confidence 457765 7889999999999999999999999999999999999999999865 578999999975310 112 3
Q ss_pred HHHHHHHHhCCcE---EEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 711 RKLLEDINASGRL---HMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 711 ~~L~~~L~~~G~~---~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.++.++|.++|+. +..+....+..++ ++++.++|++|+|+++++|+++..
T Consensus 379 ~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~ 432 (452)
T 2dgk_A 379 YDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK 432 (452)
T ss_dssp HHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 6889999999984 4444455566778 999999999999999999998874
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=313.03 Aligned_cols=377 Identities=16% Similarity=0.178 Sum_probs=276.8
Q ss_pred CCCCccc-cccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 14 HWQHPRF-HAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 14 ~~~~p~~-~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
...||++ ++.+.+.... ..+.+++...+|.|...|..+|.++++|.++.+|+++++|++..... ...
T Consensus 52 l~gnp~~~l~s~~t~~~~-~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~---~~~-------- 119 (502)
T 3hbx_A 52 LDGNPRLNLASFVTTWME-PECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAE---TAV-------- 119 (502)
T ss_dssp GSCCGGGBTTCCSCCCCC-HHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSC---CCE--------
T ss_pred cCCCCCceeccccCCCCC-HHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCccccc---CCc--------
Confidence 3468884 4444333333 34778888889999888999999999999999999999999832100 000
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD 172 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d 172 (891)
|.+++||+..+++.+..+.+...... ..+|....++.|++|..+|+|+.+++.+.|.+++.|+++
T Consensus 120 -------------g~~t~ggtea~~~a~~a~~~~~~~~~--~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~ 184 (502)
T 3hbx_A 120 -------------GVGTVGSSEAIMLAGLAFKRKWQNKR--KAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLS 184 (502)
T ss_dssp -------------EEEESSHHHHHHHHHHHHHHHHHHHH--HHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCB
T ss_pred -------------ceecCcHHHHHHHHHHHHHHHHhHHH--HhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecC
Confidence 23467888665544333322211000 011222234579999999999999998888899999998
Q ss_pred CC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc------CCceeeeccccCCccccCCCC
Q psy852 173 DK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF------DVWLHVDGAYAGSSFICPEFR 245 (891)
Q Consensus 173 ~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~------~~~lHvDaA~GG~~~~~~~~~ 245 (891)
++ |+||+++|+++|+++ |.+|+++.+||.+|.++|+++|+++|+++ |+|+|||+||||+..-
T Consensus 185 ~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p----- 253 (502)
T 3hbx_A 185 EGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAP----- 253 (502)
T ss_dssp TTBCSCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH-----
T ss_pred CCcCcCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhh-----
Confidence 76 999999999998765 57999999999999999999999999999 8999999999775420
Q ss_pred ccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccc
Q psy852 246 PFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQS 325 (891)
Q Consensus 246 ~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (891)
T Consensus 254 -------------------------------------------------------------------------------- 253 (502)
T 3hbx_A 254 -------------------------------------------------------------------------------- 253 (502)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCC
Q psy852 326 YRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE 405 (891)
Q Consensus 326 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~ 405 (891)
++++.....+ .+..+|++++++|||+++|+++|+++++++..+...+...+.|+...
T Consensus 254 --------------------~~~~~~~~~~-~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~-- 310 (502)
T 3hbx_A 254 --------------------FLYPELEWDF-RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGAD-- 310 (502)
T ss_dssp --------------------HHCTTCCCST-TSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSC--
T ss_pred --------------------hhCccccccc-CCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCC--
Confidence 0011111111 13568999999999999999999999987654432222222222100
Q ss_pred CcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHH
Q psy852 406 GAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARA 485 (891)
Q Consensus 406 ~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~ 485 (891)
T Consensus 311 -------------------------------------------------------------------------------- 310 (502)
T 3hbx_A 311 -------------------------------------------------------------------------------- 310 (502)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe
Q psy852 486 QAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST 565 (891)
Q Consensus 486 ~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva 565 (891)
T Consensus 311 -------------------------------------------------------------------------------- 310 (502)
T 3hbx_A 311 -------------------------------------------------------------------------------- 310 (502)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccc
Q psy852 566 TLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRS 644 (891)
Q Consensus 566 taGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~a 644 (891)
...+++.++|+ ..+
T Consensus 311 -----------------------------------------------------------------~~~~~~~~sr~~~~~ 325 (502)
T 3hbx_A 311 -----------------------------------------------------------------QPTFTLNFSKGSSQV 325 (502)
T ss_dssp -----------------------------------------------------------------EEECCSCCSCBSHHH
T ss_pred -----------------------------------------------------------------CCCccccCCchHHHH
Confidence 00123344665 367
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 645 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 645 L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
+++|++++.+|.+|+.+++++..+++++|.+.|+++++|+++.+ +..++|+|++.+.. +.....+.+.|.++|++
T Consensus 326 ~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~----~~~~~~l~~~L~~~Gi~ 401 (502)
T 3hbx_A 326 IAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSS----CHTEFEISDMLRRYGWI 401 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCS----SCCHHHHHHHHHTTTCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCC----cCCHHHHHHHHHhCCcE
Confidence 89999999999999999999999999999999999999999987 78999999997531 11234889999999987
Q ss_pred E---EeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 724 H---MVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 724 ~---~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ ..++...+..++ |+++..+|.+|+|.++++|+++..
T Consensus 402 v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~ 442 (502)
T 3hbx_A 402 VPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMR 442 (502)
T ss_dssp CCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 3 333444566778 999999999999999999998874
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=284.92 Aligned_cols=273 Identities=14% Similarity=0.115 Sum_probs=204.5
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIE 97 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~ 97 (891)
||||+|+++. ++.++++.. |. .|..+|....+|..++.|+.+++|+|+.+.
T Consensus 68 ~r~~g~~hg~----~~~~d~l~~----~~-~~~~~~~~~~~e~~~~~~~~~~lGlp~~~~-------------------- 118 (450)
T 3bc8_A 68 RRHYRFIHGI----GRSGDISAV----QP-KAAGSSLLNKITNSLVLNVIKLAGVHSVAS-------------------- 118 (450)
T ss_dssp HHTTTCCSCB----CC-----------CC-SBHHHHHHHHHHHHHHHHHHHHHTCTTCCE--------------------
T ss_pred CCccceecch----hHHHHHHHh----Cc-cccCCcHHHHHHHHHHHHHHHhCCCCCCce--------------------
Confidence 7999999887 566788777 44 888999999999999999999999997642
Q ss_pred ccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec---CCC
Q psy852 98 DYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDK 174 (891)
Q Consensus 98 ~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~---d~~ 174 (891)
++ +++|+|-..++.++..+|..... .+. |+.+..+|.|+.||+.+.|...++|++ ++.
T Consensus 119 ~~--------lV~GaT~~~~a~~L~aar~~~~~----------~~~-viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~ 179 (450)
T 3bc8_A 119 CF--------VVPMATGMSLTLCFLTLRHKRPK----------AKY-IIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDE 179 (450)
T ss_dssp EE--------EESSCHHHHHHHHHHHHHHHCTT----------CCE-EEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred EE--------EECCHHHHHHHHHHHHcchhhcC----------CCE-EEEECCcHHHHHHHHHHcCCeeEEEEeeecCcc
Confidence 11 23455434455566667774211 123 455566999999999998888777765 778
Q ss_pred CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCccc
Q psy852 175 NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSF 254 (891)
Q Consensus 175 g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~ 254 (891)
+.||+++|+++|+++.. ..+++|++|.+++.+|++|||++|+++|++||+|+|||+|||+.+.++++
T Consensus 180 ~~id~~~le~aI~~~~~--~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~----------- 246 (450)
T 3bc8_A 180 LRTDLKAVEAKIQELGP--EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMH----------- 246 (450)
T ss_dssp EECCHHHHHHHHHHHCG--GGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHH-----------
T ss_pred CCcCHHHHHHHHHhcCC--CCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHh-----------
Confidence 99999999999988642 24688999999998899999999999999999999999999876532100
Q ss_pred ccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceE
Q psy852 255 DNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVW 334 (891)
Q Consensus 255 d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (891)
+
T Consensus 247 --------------------------------------------------l----------------------------- 247 (450)
T 3bc8_A 247 --------------------------------------------------L----------------------------- 247 (450)
T ss_dssp --------------------------------------------------H-----------------------------
T ss_pred --------------------------------------------------H-----------------------------
Confidence 0
Q ss_pred EEeeccccCccccCccccccccCC--CcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccc
Q psy852 335 LHVDGAYAGSSFICPEFRPFMNGI--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 412 (891)
Q Consensus 335 ~~~d~~~~~~~~~~~~~~~~~~gi--~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 412 (891)
.+ +++ +.||+++.|+|||+++|+++|++++||+..+.... ..|....
T Consensus 248 ----------------~~---~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~---~~~~g~~--------- 296 (450)
T 3bc8_A 248 ----------------IQ---QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS---KMYPGRA--------- 296 (450)
T ss_dssp ----------------HH---HHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHH---HHSCSCB---------
T ss_pred ----------------HH---HHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHH---HHhhcCC---------
Confidence 00 111 35899999999999999999999999876654332 2333110
Q ss_pred cccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCC---ccccccC
Q psy852 413 WGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP---RFEISND 467 (891)
Q Consensus 413 ~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~---~~eVv~~ 467 (891)
| ...+|++|++++.+|.+||++.+++.+++++++++.|++++ ++.+++.
T Consensus 297 -----s-~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~ 348 (450)
T 3bc8_A 297 -----S-ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQT 348 (450)
T ss_dssp -----C-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC
T ss_pred -----c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCC
Confidence 0 11269999999999999999999999999999999999888 7777753
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=262.87 Aligned_cols=310 Identities=15% Similarity=0.174 Sum_probs=231.8
Q ss_pred cCCCCCCccccccCCCCC-CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q psy852 11 QVTHWQHPRFHAYFPSGN-SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTP 89 (891)
Q Consensus 11 ~~~~~~~p~~~~~~~~~~-~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp 89 (891)
..++|.||+|++++..+. ....++.+.+....+.|...|..+|...++|.++.+|+++++|++... .++
T Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~------~~~---- 129 (497)
T 3mc6_A 60 PHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDT------GCG---- 129 (497)
T ss_dssp CCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTT------CCE----
T ss_pred CCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCC------CeE----
Confidence 678999999999976553 455666677777677788888899999999999999999999998321 011
Q ss_pred CCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEE
Q psy852 90 NDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKIL 169 (891)
Q Consensus 90 ~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V 169 (891)
.+++||+. ++...+..+|......+ | ..+..|+++..+|+++.+++...|.+++.|
T Consensus 130 -----------------~~~~ggt~-a~~~a~~a~~~~~~~~~----g--~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v 185 (497)
T 3mc6_A 130 -----------------TTTSGGTE-SLLLACLSAKMYALHHR----G--ITEPEIIAPVTAHAGFDKAAYYFGMKLRHV 185 (497)
T ss_dssp -----------------EEESSHHH-HHHHHHHHHHHHHHHHS----C--CSSCEEEEETTSCHHHHHHHHHSCCEEEEE
T ss_pred -----------------EEcCcHHH-HHHHHHHHHHHHHHhcC----C--CCCceEEEeCCccHHHHHHHHHcCCeEEEE
Confidence 23567764 44444444444321101 1 123468999999999999998888899999
Q ss_pred ecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccC
Q psy852 170 EPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFM 248 (891)
Q Consensus 170 ~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~ 248 (891)
++|+ +|++|+++|+++++++ |.+|+++.++|.+|.++|+++|+++|+++|+|+|+|+||||+..-+.+..+
T Consensus 186 ~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~-- 257 (497)
T 3mc6_A 186 ELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAG-- 257 (497)
T ss_dssp CBCTTTCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTT--
T ss_pred ecCcccCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhc--
Confidence 9998 8999999999988654 579999999999999999999999999999999999999875431100000
Q ss_pred CCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccc
Q psy852 249 NGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRD 328 (891)
Q Consensus 249 ~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (891)
T Consensus 258 -------------------------------------------------------------------------------- 257 (497)
T 3mc6_A 258 -------------------------------------------------------------------------------- 257 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcc
Q psy852 329 AIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 408 (891)
Q Consensus 329 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~ 408 (891)
++ ..|.+... ...+|+++.++|||+++|+++|+++++++......+...+.|....
T Consensus 258 ------------~~----~~~~~~~~---~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----- 313 (497)
T 3mc6_A 258 ------------YK----NLPLLDFR---VPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGL----- 313 (497)
T ss_dssp ------------CC----SCCCCSTT---STTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSC-----
T ss_pred ------------cc----CCcccccc---CCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCC-----
Confidence 00 00111111 1246999999999999999999999998654332223334444322
Q ss_pred cccccccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhcc-CCccccccC
Q psy852 409 DYRHWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISND 467 (891)
Q Consensus 409 ~~~~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~-~~~~eVv~~ 467 (891)
+...++.++|... .+++|++++.+|.+|+.+++++..++++++.+.|.+ .++++++++
T Consensus 314 -~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~ 373 (497)
T 3mc6_A 314 -YGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN 373 (497)
T ss_dssp -BCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC
T ss_pred -cCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 2455677787765 568999999999999999999999999999999999 699998865
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=255.29 Aligned_cols=317 Identities=18% Similarity=0.140 Sum_probs=238.9
Q ss_pred hhHhhccCCCCCCccccccCCC-CCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy852 5 FHFLSHQVTHWQHPRFHAYFPS-GNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQG 83 (891)
Q Consensus 5 ~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~ 83 (891)
-..+.++.++|.+|+|++++.. ....+..+.+.+....+.|...+..+|...++|.++.+|+++++|++....
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~------ 159 (514)
T 3mad_A 86 AAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG------ 159 (514)
T ss_dssp HHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTS------
T ss_pred HHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccC------
Confidence 3445677889999999999865 456778899999999999988899999999999999999999999984210
Q ss_pred CCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcC
Q psy852 84 KNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 163 (891)
Q Consensus 84 ~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~ 163 (891)
. +++ .+++||+.. +...+..+|...+. +.| ..+..|+++..+|+++.+++...|
T Consensus 160 -~----------v~~--------~~t~ggt~a-~~~al~a~~~~g~~----~~g--~~~d~Vi~~~~~~~~~~~~~~~~G 213 (514)
T 3mad_A 160 -T----------VCG--------TVTSGGTES-LLLAMKTYRDWARA----TKG--ITAPEAVVPVSAHAAFDKAAQYFG 213 (514)
T ss_dssp -C----------CEE--------EEESSHHHH-HHHHHHHHHHHHHH----HHC--CSSCEEEEETTSCTHHHHHHHHHT
T ss_pred -C----------cce--------EEcCcHHHH-HHHHHHHHHHHhhh----hcC--CCCCeEEEeCccchHHHHHHHHcC
Confidence 0 011 235677654 44444444443110 011 133568999999999999998878
Q ss_pred CeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCC
Q psy852 164 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243 (891)
Q Consensus 164 ~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~ 243 (891)
.+++.|++|++|++|+++|+++|+++ +.+|+++.++|.+|.++|+++|+++|+++|+|||+|+||||+...+..
T Consensus 214 ~~v~~v~~~~~~~~d~~~Le~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~ 287 (514)
T 3mad_A 214 IKLVRTPLDADYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAE 287 (514)
T ss_dssp CEEEEECBCTTSCBCHHHHHHHCCTT------EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHH
T ss_pred CeeEEeeeCCCCCCCHHHHHHHhccC------CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHH
Confidence 89999999999999999999998754 568899999999999999999999999999999999999886531000
Q ss_pred CCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccc
Q psy852 244 FRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHI 323 (891)
Q Consensus 244 ~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (891)
. +..
T Consensus 288 ~--------------------------------------------~g~-------------------------------- 291 (514)
T 3mad_A 288 R--------------------------------------------LGY-------------------------------- 291 (514)
T ss_dssp H--------------------------------------------TTC--------------------------------
T ss_pred h--------------------------------------------cCC--------------------------------
Confidence 0 000
Q ss_pred ccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCC
Q psy852 324 QSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHG 403 (891)
Q Consensus 324 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~ 403 (891)
..+.+... ...+|++++++|||+++|+++|+++++++..........+.|...
T Consensus 292 -----------------------~~~~~~~~---~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~- 344 (514)
T 3mad_A 292 -----------------------PVPPFDFR---LEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGG- 344 (514)
T ss_dssp -----------------------CCCCCSTT---STTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTC-
T ss_pred -----------------------CCCccccc---CCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCC-
Confidence 00111111 124699999999999999999999999875443222222222221
Q ss_pred CCCcccccccccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 404 HEGAIDYRHWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 404 ~~~~~~~~~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
.+..+++.++|... .+++|++++.+|.+|+.+++++..++++++.+.|.+.++++++.+
T Consensus 345 -----~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 404 (514)
T 3mad_A 345 -----LYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGD 404 (514)
T ss_dssp -----SEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSC
T ss_pred -----cccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCC
Confidence 13356778888876 689999999999999999999999999999999999989988865
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=246.55 Aligned_cols=248 Identities=14% Similarity=0.146 Sum_probs=184.5
Q ss_pred ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhc
Q psy852 48 SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQ 127 (891)
Q Consensus 48 ~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~ 127 (891)
.|..+|.+.++|.++.+++++++|++.. ++ +++|||..+|...+..+|..
T Consensus 124 ~~~~~~~~~~~~~~~~~~la~~~g~~~~---------~~---------------------~t~g~te~a~~~al~~~~~~ 173 (456)
T 2z67_A 124 KASGASIMYALTNKILESFFKQLGLNVH---------AI---------------------ATPISTGMSISLCLSAARKK 173 (456)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHTTCCCE---------EE---------------------EESSCHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHcCCCCC---------EE---------------------EeCcHHHHHHHHHHHHHHHh
Confidence 4566778999999999999999999743 11 35677755555333334442
Q ss_pred cccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec---CCCCcccHHHHHHHHHhhhhcCCcceEEEeecc
Q psy852 128 KKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG 204 (891)
Q Consensus 128 ~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~---d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~G 204 (891)
. ++..|+++..+|+|+.+++...|.+++.|++ |++|.+|+++|+++|+.+..++ .+++|+.+.+
T Consensus 174 ~------------~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~~vv~~~~ 240 (456)
T 2z67_A 174 Y------------GSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELG-NRPCVLSTLT 240 (456)
T ss_dssp H------------CCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTT-CCEEEEEESS
T ss_pred c------------CCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCC-CeEEEEEeCC
Confidence 1 1123555666999999999888888888886 7889999999999994321112 3678889999
Q ss_pred cCccccccCHHHHHHHHHHcCCceeeeccccCCcc-ccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHH
Q psy852 205 TTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSF-ICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARA 283 (891)
Q Consensus 205 tt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~-~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~ 283 (891)
||.+|.++|+++|+++|+++|+|+|||+|||+... ..
T Consensus 241 nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~------------------------------------------ 278 (456)
T 2z67_A 241 FFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYL------------------------------------------ 278 (456)
T ss_dssp CCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHH------------------------------------------
T ss_pred CCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhh------------------------------------------
Confidence 99999999999999999999999999999965432 00
Q ss_pred HHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccE
Q psy852 284 QAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADS 363 (891)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds 363 (891)
+.....+.+ .+|+
T Consensus 279 -----------------------------------------------------------------~~~~~~~~~--~~D~ 291 (456)
T 2z67_A 279 -----------------------------------------------------------------EKLKKAFKY--RVDA 291 (456)
T ss_dssp -----------------------------------------------------------------HHHHHHHTS--CCSE
T ss_pred -----------------------------------------------------------------HHHHHhhCC--CCCE
Confidence 000011112 4799
Q ss_pred EEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCC-hhHHHHHHHHHHhcHHHHHHHH
Q psy852 364 FNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYI 442 (891)
Q Consensus 364 ~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~G~~~ii 442 (891)
+++++|||+++|+++|++++|++..+.. + .+.|.. .+. ..++++|+++..+|.+|+.+++
T Consensus 292 ~~~s~hK~~~~p~g~G~l~~~~~~~~~~-l--~~~~~g----------------~~~~~~~~~~~aal~~l~~~~~~~~~ 352 (456)
T 2z67_A 292 VVSSSDKNLLTPIGGGLVYSTDAEFIKE-I--SLSYPG----------------RASATPVVNTLVSLLSMGSKNYLELV 352 (456)
T ss_dssp EEEEHHHHHCCCSSCEEEEESCHHHHHH-H--HTTSCS----------------CBCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCcCCCCCeEEEEEcCHHHHhh-c--CcCCCC----------------CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643332 2 333432 111 1378999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCC---cccccc
Q psy852 443 RRHCELAKLFEGKVRRDP---RFEISN 466 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~---~~eVv~ 466 (891)
++..++++++.+.|.+.+ ++.++.
T Consensus 353 ~~~~~~~~~l~~~L~~~~~~~g~~v~~ 379 (456)
T 2z67_A 353 KNQKNSKKLLDELLNDLSKKTGGKFLD 379 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCBCC
T ss_pred HHHHHHHHHHHHHHHhcccccCCEecC
Confidence 999999999999998875 666654
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-20 Score=202.23 Aligned_cols=314 Identities=16% Similarity=0.097 Sum_probs=220.0
Q ss_pred hHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q psy852 6 HFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKN 85 (891)
Q Consensus 6 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g 85 (891)
..+.+...+|.+|+|+++..+++. |.++..+.. .+..+...+...|...+++.++.+++++++|.+....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i-------- 89 (397)
T 3f9t_A 20 KKYRSLDLKYEDGNIFGSMCSNVL-PITRKIVDI-FLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYG-------- 89 (397)
T ss_dssp HHHHTTSCCGGGTCBCSCSCCCCC-THHHHHHHH-HTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEE--------
T ss_pred HHhhccCCCCCCCCeEEEecCCCc-HHHHHHHHH-HHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCE--------
Confidence 345677788999999999976544 555544444 4443333344567889999999999999999875421
Q ss_pred CCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccc-cccCCeEEEecCCCChHHHHHHHHcCC
Q psy852 86 ATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEG-VLLSKLMAYCSKEAHSCVEKAAMMAFV 164 (891)
Q Consensus 86 ~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g-~~~~~~~v~~S~~~H~Sv~kaa~~~~~ 164 (891)
.+++||+... ...+..++...... ..+| ...++..|+++..+|+++.+++...|.
T Consensus 90 ---------------------~~~~ggt~a~-~~~~~~~~~~~~~~--~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~ 145 (397)
T 3f9t_A 90 ---------------------HIVSGGTEAN-LMALRCIKNIWREK--RRKGLSKNEHPKIIVPITAHFSFEKGREMMDL 145 (397)
T ss_dssp ---------------------EEESCHHHHH-HHHHHHHHHHHHHH--HHTTCCCCSSCEEEEETTCCTHHHHHHHHHTC
T ss_pred ---------------------EEecCcHHHH-HHHHHHHHHHHHhh--hhhcccCCCCeEEEECCcchhHHHHHHHHcCc
Confidence 1356787543 33333332210000 0000 011344688899999999999987788
Q ss_pred eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCC
Q psy852 165 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEF 244 (891)
Q Consensus 165 ~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~ 244 (891)
+++.||+|+++.+|+++|++.+++. .+.+|+++.++|.+|.++|+++|.++|+++|+++|+|.||+|+.+-....
T Consensus 146 ~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~ 220 (397)
T 3f9t_A 146 EYIYAPIKEDYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDD 220 (397)
T ss_dssp EEEEECBCTTSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCG
T ss_pred eeEEEeeCCCCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccc
Confidence 9999999999999999999999873 14588888899999999999999999999999999999997764311000
Q ss_pred CccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccc
Q psy852 245 RPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQ 324 (891)
Q Consensus 245 ~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (891)
.. .+.
T Consensus 221 ~~-----------~~~---------------------------------------------------------------- 225 (397)
T 3f9t_A 221 KY-----------KKK---------------------------------------------------------------- 225 (397)
T ss_dssp GG-----------CCT----------------------------------------------------------------
T ss_pred cc-----------ccc----------------------------------------------------------------
Confidence 00 000
Q ss_pred cccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCC
Q psy852 325 SYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH 404 (891)
Q Consensus 325 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~ 404 (891)
+ +...+ .+.. .+|++++++||++++|.++|.++++++.... .+....+|+....
T Consensus 226 -------~--------------~~~~~--~~~~--~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (397)
T 3f9t_A 226 -------G--------------VNYKF--DFSL--GVDSITIDPHKMGHCPIPSGGILFKDIGYKR-YLDVDAPYLTETR 279 (397)
T ss_dssp -------T--------------CCCCC--SGGG--TCSEEECCTTTTTCCCSSCEEEEESSGGGGG-GTCEECTTSSSSE
T ss_pred -------c--------------ccccc--cccc--cCCeEEEccccccCCCCCceEEEEeCHHHHH-hhccCCccccCCC
Confidence 0 00000 0011 4699999999999999999999998765432 2333345554321
Q ss_pred CCcccccccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 405 EGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 405 ~~~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
..++.++|.. ..+++|++++.++..++.+++++..++++++.+.|++. +++++.+
T Consensus 280 -------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 335 (397)
T 3f9t_A 280 -------QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVIE 335 (397)
T ss_dssp -------ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred -------ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcC
Confidence 3345567764 56889999999999999999999999999999999987 7777654
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-19 Score=205.18 Aligned_cols=178 Identities=39% Similarity=0.707 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhhccCCcc-------ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchH
Q psy852 445 HCELAKLFEGKVRRDPRF-------EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHS 517 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~-------eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~ 517 (891)
+.++++++.+.+.--+.+ .--+-+++|||++|++|+++||+++.++.+..++...+....++++||+|+.+|+
T Consensus 120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~ 199 (481)
T 4e1o_A 120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHS 199 (481)
T ss_dssp HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCH
T ss_pred HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchH
Confidence 344555666666432221 0012378999999999999999988776543233222222357889999999999
Q ss_pred HHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----h----
Q psy852 518 CVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----K---- 575 (891)
Q Consensus 518 Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~---- 575 (891)
|+.|++.++|.+++.||+|++|+||+++|+++|+++.+.+..|++|+++.|+|. |++ |
T Consensus 200 s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA 279 (481)
T 4e1o_A 200 SVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAA 279 (481)
T ss_dssp HHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehh
Confidence 999999999999999999999999999999999998888888999999998886 332 2
Q ss_pred --------------hcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccc
Q psy852 576 --------------SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQ 622 (891)
Q Consensus 576 --------------ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~ 622 (891)
+.|++.+||+++|+|||+++|++||++++|++..+.+.+...+.|+.
T Consensus 280 ~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~ 340 (481)
T 4e1o_A 280 YAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLR 340 (481)
T ss_dssp TGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGC
T ss_pred hHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhcc
Confidence 23566789999999999999999999999999777666655556653
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-19 Score=205.37 Aligned_cols=275 Identities=32% Similarity=0.550 Sum_probs=179.9
Q ss_pred HHHHHHHHHHhhccCCcc--------ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccch
Q psy852 445 HCELAKLFEGKVRRDPRF--------EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH 516 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~--------eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH 516 (891)
+.++++++.+.+..-+.+ ..+ +|+|||++|++|+++||+++.++.+..++...++...++++||+|+.+|
T Consensus 115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv--~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H 192 (475)
T 3k40_A 115 EVVMMDWLGKMLELPAEFLACSGGKGGGV--IQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAH 192 (475)
T ss_dssp HHHHHHHHHHHTTCCGGGCGGGTSSCEEE--EESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSC
T ss_pred HHHHHHHHHHHhCCCchhccccCCCCCeE--EcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCch
Confidence 344556666666543222 233 7899999999999999998876543222222222234678999999999
Q ss_pred HHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----h---
Q psy852 517 SCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----K--- 575 (891)
Q Consensus 517 ~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~--- 575 (891)
+|+.|++.++|++++.||+|++| ||+++|+++|+++.+.+..|++|+.+.|+|. |++ |
T Consensus 193 ~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~ 271 (475)
T 3k40_A 193 SSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA 271 (475)
T ss_dssp HHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeH
Confidence 99999999999999999999999 9999999999998888888999999988876 332 2
Q ss_pred ---------------hcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccc
Q psy852 576 ---------------SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR 640 (891)
Q Consensus 576 ---------------ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SR 640 (891)
+.|++.+||+++|+|||+++|++||++++|++..+.+.+...+.|+...
T Consensus 272 A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~---------------- 335 (475)
T 3k40_A 272 AYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHD---------------- 335 (475)
T ss_dssp TTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC------------------------------
T ss_pred HhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCC----------------
Confidence 3456678999999999999999999999999877665555445554310
Q ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhC
Q psy852 641 RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINAS 720 (891)
Q Consensus 641 r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~ 720 (891)
..+ +. .. ..-+.+.... ....-.+...|..-
T Consensus 336 ------------~~~--~~---------------------~~----------~~~~~~~~sr----~~~~l~l~~al~~~ 366 (475)
T 3k40_A 336 ------------MQG--SA---------------------PD----------YRHWQIPLGR----RFRALKLWFVLRLY 366 (475)
T ss_dssp ----------------------------------------------------------CCCG----GGTHHHHHHHHHHH
T ss_pred ------------cCC--CC---------------------CC----------cccccccCCC----cccHHHHHHHHHHH
Confidence 000 00 00 0000000000 00011111111110
Q ss_pred CcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCcccccCCCcccceEEeecccchhhhhhhhH
Q psy852 721 GRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNR 800 (891)
Q Consensus 721 G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~~~~~~~~gl~~~r~~~~~~~~~~~~~~ 800 (891)
..+.++..++...+.++.+.+.|++.+.|++..+...++||||+++. +..++
T Consensus 367 -----------------------g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~-----~~~~~ 418 (475)
T 3k40_A 367 -----------------------GVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS-----NERNE 418 (475)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSC-----HHHHH
T ss_pred -----------------------hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCc-----hHHHH
Confidence 23456677777778888888888887777776777889999999763 23455
Q ss_pred HHHHHHHhhccccCC
Q psy852 801 KLLEDINASGRLHMV 815 (891)
Q Consensus 801 ~~~~~~~~~~~~~~~ 815 (891)
++.++++..|.....
T Consensus 419 ~l~~~L~~~g~~~~~ 433 (475)
T 3k40_A 419 ALLKRINGRGHIHLV 433 (475)
T ss_dssp HHHHHHHHHTSCBCE
T ss_pred HHHHHHHhCCcEEEE
Confidence 777888877766543
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=9e-20 Score=206.81 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHH-HHHHHHHhccccCCc
Q psy852 55 CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQ-NIIVLTRGQKKIHPF 133 (891)
Q Consensus 55 ~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~-~~~~~ar~~~~~~~~ 133 (891)
...-|..+++||.++ |+|.... + |...|++..+. .++..+|... |
T Consensus 115 ~~ltn~l~ld~L~~~-G~~~~~~---------------------~--------flVnGsTgg~lamilaa~r~~r---p- 160 (501)
T 3hl2_A 115 NKITNSLVLDIIKLA-GVHTVAN---------------------C--------FVVPMATGMSLTLCFLTLRHKR---P- 160 (501)
T ss_dssp HHHHHHHHHHHHHHT-TCTTCCE---------------------E--------EEESSCHHHHHHHHHHHHHHHC---T-
T ss_pred HHHHHHHHHHHHHHc-CCCCCCc---------------------E--------EEECcHHHHHHHHHHHHcCccc---C-
Confidence 457789999999999 9996521 1 11223222333 3333345431 1
Q ss_pred cccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec---CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc
Q psy852 134 VDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS 210 (891)
Q Consensus 134 ~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~---d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga 210 (891)
....|+.+..+|.|+.|++.+.|...++|++ ++...+|+++|+++|++... ...++|+.|..++..++
T Consensus 161 -------g~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga--~~i~~V~~Ttt~y~p~~ 231 (501)
T 3hl2_A 161 -------KAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGP--DCILCIHSTTSCFAPRV 231 (501)
T ss_dssp -------TCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCG--GGEEEEEEECSCCTTBC
T ss_pred -------CCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCC--CcEEEEEecCCCCCCcc
Confidence 1123667999999999999999999999887 55789999999999997621 11234444433333568
Q ss_pred ccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhc
Q psy852 211 FDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLK 290 (891)
Q Consensus 211 vDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 290 (891)
+|||++|+++|++||+|+|||.|||+.+.++++.
T Consensus 232 ~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~l---------------------------------------------- 265 (501)
T 3hl2_A 232 PDRLEELAVICANYDIPHIVNNAYGVQSSKCMHL---------------------------------------------- 265 (501)
T ss_dssp CCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHH----------------------------------------------
T ss_pred cccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhh----------------------------------------------
Confidence 8999999999999999999999998765332100
Q ss_pred ccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCC
Q psy852 291 KIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNK 370 (891)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK 370 (891)
.. ..++ ...||.++.|+||
T Consensus 266 ----------p~--------------------------------------------------sA~~-~GrAD~vVqS~HK 284 (501)
T 3hl2_A 266 ----------IQ--------------------------------------------------QGAR-VGRIDAFVQSLDK 284 (501)
T ss_dssp ----------HH--------------------------------------------------HHHH-HSCCCEEEEEHHH
T ss_pred ----------HH--------------------------------------------------HHHh-cCCCcEEEecccc
Confidence 00 0000 0137999999999
Q ss_pred cCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCC-ChhHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q psy852 371 WLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449 (891)
Q Consensus 371 ~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr-~~~~l~~w~~l~~~g~~G~~~ii~~~lelA 449 (891)
++++|.++++++.||+..+... ...|. |.+ ++.++++|++++.+|++||+++++++++++
T Consensus 285 ~llvpIGG~ii~~~d~e~l~~~---~~~yP----------------Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela 345 (501)
T 3hl2_A 285 NFMVPVGGAIIAGFNDSFIQEI---SKMYP----------------GRASASPSLDVLITLLSLGSNGYKKLLKERKEMF 345 (501)
T ss_dssp HHCCCSSCEEEEESCHHHHHHH---HHTSC----------------SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeecCceEEEeCCHHHHHHH---HHhCC----------------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999889889987655432 22232 233 456899999999999999999999999999
Q ss_pred HHHHHhhccCC
Q psy852 450 KLFEGKVRRDP 460 (891)
Q Consensus 450 r~l~~~L~~~~ 460 (891)
+||.+.|++..
T Consensus 346 ~~L~~~L~~la 356 (501)
T 3hl2_A 346 SYLSNQIKKLS 356 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998743
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-19 Score=203.94 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=206.3
Q ss_pred HHHHHHHHHHhhccC-CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH
Q psy852 445 HCELAKLFEGKVRRD-PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 445 ~lelAr~l~~~L~~~-~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
..++++++++.+... +.-.++ +++|+++++..++.++|+....+. |. .+..|+++..+|+++.+++
T Consensus 109 ~~~~~~~la~~~g~~~~~~~~~--~~~ggt~a~~~a~~a~~~~~~~~~---------g~--~~~~Vi~~~~~h~~~~~~~ 175 (497)
T 3mc6_A 109 ESEVVSMVLRMFNAPSDTGCGT--TTSGGTESLLLACLSAKMYALHHR---------GI--TEPEIIAPVTAHAGFDKAA 175 (497)
T ss_dssp HHHHHHHHHHHTTCCTTTCCEE--EESSHHHHHHHHHHHHHHHHHHHS---------CC--SSCEEEEETTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCeEE--EcCcHHHHHHHHHHHHHHHHHhcC---------CC--CCceEEEeCCccHHHHHHH
Confidence 345556666666543 122444 678999999999999988654321 21 2457999999999999999
Q ss_pred HHcCceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEecCCc-----cc--------hhh-----hhcC------
Q psy852 524 MMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGT-----TS--------CYR-----KSQG------ 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~VvataGT-----T~--------c~~-----~ldG------ 578 (891)
.+.|++++.||+++ ++++|+++|+++|+++ +.+|+.+.++ .. |.+ ++|+
T Consensus 176 ~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~ 249 (497)
T 3mc6_A 176 YYFGMKLRHVELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFI 249 (497)
T ss_dssp HHSCCEEEEECBCTTTCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHH
T ss_pred HHcCCeEEEEecCcccCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhh
Confidence 99999999999988 8999999999998753 4455544433 22 433 1221
Q ss_pred ------------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccc
Q psy852 579 ------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR 640 (891)
Q Consensus 579 ------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SR 640 (891)
..++|++++++|||+++|.++|+++++++..........+.|... .....++.++|
T Consensus 250 ~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~ 323 (497)
T 3mc6_A 250 VSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG------LYGSPTLAGSR 323 (497)
T ss_dssp HGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTS------CBCCSSSCSSC
T ss_pred hhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCC------CcCCcCcccCC
Confidence 235899999999999999999999999875433222223333321 12344555555
Q ss_pred c-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 641 R-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 641 r-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
. ...+.+|++++.++.+|+.+.+++..++++++.+.|++ +++++++.++..++++|+..+. ...++.+.|.
T Consensus 324 ~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~-------~~~~l~~~L~ 396 (497)
T 3mc6_A 324 PGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTL-------NIHELSDRLS 396 (497)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTT-------THHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCC-------CHHHHHHHHH
Confidence 4 33567999999999999999999999999999999999 6999999888999999987532 4578899999
Q ss_pred hCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 719 ~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++|+.+.... ....+ +++. .+|++|+|+++++|+++..
T Consensus 397 ~~Gi~v~~~~---~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~ 435 (497)
T 3mc6_A 397 KKGWHFNALQ---KPVALHMAFT-RLSAHVVDEICDILRTTVQ 435 (497)
T ss_dssp TTTCBCEECC---SSCCEEEECC-TTTTCTHHHHHHHHHHHHH
T ss_pred hCCEEEecCC---CCCeEEEEEe-CCCHHHHHHHHHHHHHHHH
Confidence 9998643221 12235 7776 6799999999999998874
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-18 Score=195.80 Aligned_cols=280 Identities=17% Similarity=0.157 Sum_probs=203.8
Q ss_pred HHHHHHHHHhhccCC--ccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH
Q psy852 446 CELAKLFEGKVRRDP--RFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 446 lelAr~l~~~L~~~~--~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
.++++++++.+...+ . .+.+-+++|++++|..++.++|....++. | ..+..|+++..+|.++.+++
T Consensus 142 ~~l~~~la~~~g~~~~~~-~v~~~~t~ggt~a~~~al~a~~~~g~~~~---------g--~~~d~Vi~~~~~~~~~~~~~ 209 (514)
T 3mad_A 142 AEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLAMKTYRDWARATK---------G--ITAPEAVVPVSAHAAFDKAA 209 (514)
T ss_dssp HHHHHHHHHHTTGGGGTS-CCEEEEESSHHHHHHHHHHHHHHHHHHHH---------C--CSSCEEEEETTSCTHHHHHH
T ss_pred HHHHHHHHHHcCCCCccC-CcceEEcCcHHHHHHHHHHHHHHHhhhhc---------C--CCCCeEEEeCccchHHHHHH
Confidence 345556666665431 1 23122788999999999999987654321 1 23467999999999999999
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC-----Cccc--------hhh-----hhcC-------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL-----GTTS--------CYR-----KSQG------- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata-----GTT~--------c~~-----~ldG------- 578 (891)
.+.|++++.||+++++++|+++|+++|+++ +.+|+.+. |... |.+ ++|+
T Consensus 210 ~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~ 283 (514)
T 3mad_A 210 QYFGIKLVRTPLDADYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFIL 283 (514)
T ss_dssp HHHTCEEEEECBCTTSCBCHHHHHHHCCTT------EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTH
T ss_pred HHcCCeeEEeeeCCCCCCCHHHHHHHhccC------CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccc
Confidence 999999999999999999999999999763 33344333 3332 433 1222
Q ss_pred ----------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc
Q psy852 579 ----------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 579 ----------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
..++|++++++|||+++|.++|+++++++............|... .....++.++|..
T Consensus 284 ~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~gs~~~ 357 (514)
T 3mad_A 284 PWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGG------LYFSPTFAGSRPG 357 (514)
T ss_dssp HHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTC------SEEESSSCSSCCH
T ss_pred hhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCC------cccCCccCCCCch
Confidence 245799999999999999999999999875443222222223211 1223455667654
Q ss_pred c-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 643 R-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 643 ~-aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
. .+.+|++++.++..++++.+++..++++++.+.|+++++++++.++ .++++|+..+. ...++.+.|.++|
T Consensus 358 ~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~-------~~~~l~~~L~~~G 429 (514)
T 3mad_A 358 ALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-LWVIAVASDEL-------NIYQVMEEMAGRG 429 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-SSEEEEECSSS-------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-eEEEEEeCCCC-------CHHHHHHHHHhcC
Confidence 4 6799999999999999999999999999999999999999998766 45888876432 3567889999999
Q ss_pred cEEEeeccccCCeEE-EEec-CCCCHHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQEQNDEV-FELQ-ERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 722 ~~~~s~s~~~g~~~l-~sv~-~~tT~edId~li~~L~ei~~ 760 (891)
+.+ .+.. ....+ +++. ..+++++|+++++.|++++.
T Consensus 430 i~v-~g~~--~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 430 WRL-NGLH--RPPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp CBC-EEET--TTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred CEe-ccCC--CCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 875 3322 23446 8776 46788999999999998874
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-16 Score=168.35 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=125.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCC---CCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGC---IGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~---~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
.|+++..+++..|.++..+...+.+. ....+..+.....+..++.+++++++|.+....
T Consensus 2 iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i------------------ 63 (382)
T 4hvk_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTV------------------ 63 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEE------------------
T ss_pred EeecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeE------------------
Confidence 37888877777787777666654321 222344556678888999999999999864321
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH---cCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~---~~~~v~~V~~d 172 (891)
.+++||+....+.+..+.+... .+...|+++..+|++...++.. .|.+++.|++|
T Consensus 64 -----------~~~~g~~~a~~~~~~~~~~~~~-----------~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 121 (382)
T 4hvk_A 64 -----------VFTSGATEANNLAIIGYAMRNA-----------RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG 121 (382)
T ss_dssp -----------EEESSHHHHHHHHHHHHHHHHG-----------GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC
T ss_pred -----------EEECCchHHHHHHHHHhhhhhc-----------CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC
Confidence 1356776443333333332110 0122488889999999888743 57899999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
++|.+|+++|++.+++. +.+|+++..+|.+|.+.|+++|.++|+++|+ +|+|+|++
T Consensus 122 ~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~ 177 (382)
T 4hvk_A 122 KYGEVDVSFIDQKLRDD------TILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATAS 177 (382)
T ss_dssp TTSCBCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTT
T ss_pred CCCCcCHHHHHHHhccC------ceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHh
Confidence 99999999999998654 4689999999999999999999999999999 99999883
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=182.64 Aligned_cols=290 Identities=16% Similarity=0.116 Sum_probs=194.8
Q ss_pred CCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccc-cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 15 WQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWA-ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 15 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~-~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
+.+..|++ -.++...|.++..+.....+.+..... .++...+++.++.+++++++|++...
T Consensus 65 ~~~~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~----------------- 126 (474)
T 1wyu_B 65 DTTFYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAIT----------------- 126 (474)
T ss_dssp TTSCCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEE-----------------
T ss_pred ccCccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCcee-----------------
Confidence 45667777 344445577777777664333333333 58889999999999999999987421
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD 173 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~ 173 (891)
.+++||+. ++...+.++|..... + |...++..|+++..+|.+..+++...|.+++.|++|+
T Consensus 127 -------------~~~~ggt~-a~~~al~~~~~~~~~-~----Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~ 187 (474)
T 1wyu_B 127 -------------LEPAAGAH-GELTGILIIRAYHED-R----GEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP 187 (474)
T ss_dssp -------------CCCSSHHH-HHHHHHHHHHHHHHH-T----TCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT
T ss_pred -------------ecChHHHH-HHHHHHHHHHHHHHh-c----CCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC
Confidence 13467764 444434444432000 0 0001233588888999999999988888999999999
Q ss_pred CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc-cCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCc
Q psy852 174 KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-DNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKT 252 (891)
Q Consensus 174 ~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-Dpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~ 252 (891)
+|.+|+++|+++++++ +.+|+++..| .+|.+ +|+++|+++|+++|+++|+|+|++.... |
T Consensus 188 ~~~~d~~~L~~~i~~~------t~~v~~~~pn-~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~----------g-- 248 (474)
T 1wyu_B 188 EGEVDLEALKRELGPH------VAALMLTNPN-TLGLFERRILEISRLCKEAGVQLYYDGANLNAIM----------G-- 248 (474)
T ss_dssp TSSBCHHHHHHHCSTT------EEEEEECSSC-TTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT----------T--
T ss_pred CCCcCHHHHHHhhCCC------ceEEEEECCC-CCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhc----------c--
Confidence 9999999999998754 3467777775 59999 8999999999999999999999832110 0
Q ss_pred ccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccc
Q psy852 253 SFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFD 332 (891)
Q Consensus 253 ~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (891)
+
T Consensus 249 --------------~----------------------------------------------------------------- 249 (474)
T 1wyu_B 249 --------------W----------------------------------------------------------------- 249 (474)
T ss_dssp --------------T-----------------------------------------------------------------
T ss_pred --------------C-----------------------------------------------------------------
Confidence 0
Q ss_pred eEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccC-----CceEEEEeccccchhhcccCccccCCCCCC-
Q psy852 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAF-----DSSCLWVADRYKLTSALVVDPLYLQHGHEG- 406 (891)
Q Consensus 333 ~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~-----~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~- 406 (891)
+.+ .. ..+|.+++++||++++|+ ++|++++++.. ...+. ..++......
T Consensus 250 --------------~~~--~~-----~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l--~~~l~--~~~~~~~g~~~ 304 (474)
T 1wyu_B 250 --------------ARP--GD-----MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL--APYLP--VPLVERGEEGF 304 (474)
T ss_dssp --------------CCH--HH-----HTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGG--GGGCC--SCEEEECSSCE
T ss_pred --------------CCc--cc-----CCCcEEEEeCccccccCCCCCCCCeEEEEEcHHH--HHhCC--CCeeeccCCee
Confidence 000 00 026999999999999997 68999998752 22121 1111100000
Q ss_pred ------cccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q psy852 407 ------AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 407 ------~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv 465 (891)
....+.....+......++.|..++.+|.+++.++.++..++++++.+.|++. ++++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~ 368 (474)
T 1wyu_B 305 YLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVP 368 (474)
T ss_dssp EEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCS
T ss_pred EecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEec
Confidence 00000001011112346678999999999999999999999999999999886 77764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-17 Score=187.02 Aligned_cols=256 Identities=12% Similarity=0.101 Sum_probs=178.6
Q ss_pred CCCCcc-hhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC---CCCCCcCH
Q psy852 468 VRSSAS-ECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRG 543 (891)
Q Consensus 468 itsggs-ean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~---d~~G~mD~ 543 (891)
+++|+| .++..+|.++|.... +.+.|+++..+|.|+.||+.++|+..+.|++ ++.+.||+
T Consensus 121 lV~GaT~~~~a~~L~aar~~~~----------------~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~ 184 (450)
T 3bc8_A 121 VVPMATGMSLTLCFLTLRHKRP----------------KAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDL 184 (450)
T ss_dssp EESSCHHHHHHHHHHHHHHHCT----------------TCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCH
T ss_pred EECCHHHHHHHHHHHHcchhhc----------------CCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCH
Confidence 456776 788888999988421 0134666677999999999999987776654 77899999
Q ss_pred HHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----hhc----------------CC--CCccEEEE
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----KSQ----------------GI--EYADSFNV 587 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~ld----------------Gi--~~aDSIs~ 587 (891)
++|+++|+++.. ..+++|+++.+++. |++ |+| ++ ++||+++.
T Consensus 185 ~~le~aI~~~~~--~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~ 262 (450)
T 3bc8_A 185 KAVEAKIQELGP--EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQ 262 (450)
T ss_dssp HHHHHHHHHHCG--GGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHhcCC--CCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEE
Confidence 999999998742 24677777766663 333 233 23 68999999
Q ss_pred cCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHH
Q psy852 588 NVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHC 667 (891)
Q Consensus 588 d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~ 667 (891)
|+|||+++|++++++++|+++.+..... .|... +. ...+|++|.+++.+|.++|++.+++++
T Consensus 263 S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g~-------------~s--~SpsL~l~~~l~~~G~~g~~~~i~~~~ 324 (450)
T 3bc8_A 263 SLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGR-------------AS--ASPSLDVLITLLSLGCSGYRKLLKERK 324 (450)
T ss_dssp EHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSC-------------BC--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCchhccEEEEecCHHHHHHHHH---HhhcC-------------Cc--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998766644321 23210 00 123599999999999999999999999
Q ss_pred HHHHHHHHHhccCC---CcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHHhC---CcEEEe--------------
Q psy852 668 ELAKLFEGKVRRDP---RFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDINAS---GRLHMV-------------- 726 (891)
Q Consensus 668 ~lA~~L~~~L~~~~---~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~---G~~~~s-------------- 726 (891)
+++++|.++|++++ ++.++..+..+ -.++.+..... ..+.+..+|.-.+... |.-+..
T Consensus 325 ~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~-~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~ 403 (450)
T 3bc8_A 325 EMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG-HHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRG 403 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS-SSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEET
T ss_pred HHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccc-cccCCCceeEEEecCCCCccceeeecccccchhHHHHHH
Confidence 99999999999988 88888755332 12232321100 0022344566666443 433220
Q ss_pred -e--ccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 727 -P--ASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 727 -~--s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ ...-..+.+ +.++...+++|+++++++|+++..
T Consensus 404 ~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~ 441 (450)
T 3bc8_A 404 FMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN 441 (450)
T ss_dssp TTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 0 111233445 777888999999999999999864
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=187.52 Aligned_cols=263 Identities=11% Similarity=0.138 Sum_probs=184.3
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcc-hhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSAS-ECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggs-ean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
++.+.+++.+...+. ++ +++|+| .+|+.++.++|... +...|+++..+|+|+.+++..
T Consensus 137 ~~~~~la~~~g~~~~--~~--~t~g~te~a~~~al~~~~~~~-----------------~~~~vi~~~~~h~s~~~~~~~ 195 (456)
T 2z67_A 137 KILESFFKQLGLNVH--AI--ATPISTGMSISLCLSAARKKY-----------------GSNVVIYPYASHKSPIKAVSF 195 (456)
T ss_dssp HHHHHHHHHTTCCCE--EE--EESSCHHHHHHHHHHHHHHHH-----------------CCCEEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC--EE--EeCcHHHHHHHHHHHHHHHhc-----------------CCCEEEEECCCcHHHHHHHHH
Confidence 344566677765443 44 788999 46777888776521 122466666799999999999
Q ss_pred cCceEEEecC---CCCCCcCHHHHHHHHHhhhhcCCccEEEEecCC-----ccc--------hhh-----hhc---C---
Q psy852 526 AFVRLKILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG-----TTS--------CYR-----KSQ---G--- 578 (891)
Q Consensus 526 ~gv~v~~Vp~---d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataG-----TT~--------c~~-----~ld---G--- 578 (891)
.|++++.||. +++|.+|+++|+++|+.+...+ .+.+|+.+.+ +.. |++ ++| |
T Consensus 196 ~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~ 274 (456)
T 2z67_A 196 VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQN 274 (456)
T ss_dssp TTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred cCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHH
Confidence 9999988886 7889999999999994321112 3555554444 333 433 344 2
Q ss_pred ----------CC-CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchH
Q psy852 579 ----------IE-YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLK 646 (891)
Q Consensus 579 ----------i~-~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~ 646 (891)
+. ++|++++|+|||+++|.++|++++|+++.+... .+.|.. .+. ..++.
T Consensus 275 ~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l---~~~~~g----------------~~~~~~~~~ 335 (456)
T 2z67_A 275 NYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEI---SLSYPG----------------RASATPVVN 335 (456)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HTTSCS----------------CBCSHHHHH
T ss_pred HHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhc---CcCCCC----------------CCCCCHHHH
Confidence 01 699999999999999999999999876544322 223321 111 12788
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC---CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 647 LWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP---RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 647 lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
+|+++..+|.++++++.++..+++++|.+.|++.+ ++.++.+ . ++|+|++... + ....+.++|.++|+.
T Consensus 336 ~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~-~-~~v~~~~~~~-----~-~~~~l~~~L~~~gi~ 407 (456)
T 2z67_A 336 TLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV-E-SPIASCISVN-----S-DPVEIAAKLYNLRVT 407 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC-C-CSSEEEEECS-----S-CHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCC-C-CeEEEEEecc-----c-HHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999885 7666654 4 8899988321 1 145678888888752
Q ss_pred --EEe-------ecc--ccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 724 --HMV-------PAS--QEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 724 --~~s-------~s~--~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
-+. +.. ......+ ++++.++|++|||+++++|+++
T Consensus 408 ~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 408 GPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp SCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred cceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 121 110 1122456 8898899999999999999864
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-15 Score=170.46 Aligned_cols=168 Identities=15% Similarity=0.119 Sum_probs=120.1
Q ss_pred CCCCccccccCCCCCCH-HHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 14 HWQHPRFHAYFPSGNSY-PSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 14 ~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
.-.+|.++-+.|.+... +.++..+..... ...+|....+..++.+++++++|.+.... +
T Consensus 8 ~~~~~~~~~~~pgp~~~~~~v~~a~~~~~~------~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------v------ 67 (411)
T 3nnk_A 8 QLNPPSRLLMGPGPINADPRVLRAMSSQLI------GQYDPAMTHYMNEVMALYRGVFRTENRWT--------M------ 67 (411)
T ss_dssp SCCCCCCEEESSSCCCCCHHHHHHHTSCCC------CTTCHHHHHHHHHHHHHHHHHHTCCCSEE--------E------
T ss_pred ccCCccceeecCCCCCCCHHHHHHhhcccc------ccccHHHHHHHHHHHHHHHHHhCCCCCcE--------E------
Confidence 34577777777665544 444443332221 12367777888999999999999875420 0
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChH--HHHHHHHcCCeEEEEe
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAMMAFVRLKILE 170 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~S--v~kaa~~~~~~v~~V~ 170 (891)
.+++||+......+..+ .. ++..|+++..+|++ +..++...+.+++.|+
T Consensus 68 --------------~~~~sgt~al~~~~~~~--~~-------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 118 (411)
T 3nnk_A 68 --------------LVDGTSRAGIEAILVSA--IR-------------PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIE 118 (411)
T ss_dssp --------------EEESCHHHHHHHHHHHH--CC-------------TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred --------------EECCCcHHHHHHHHHHh--cC-------------CCCEEEEecCCchHHHHHHHHHHcCCeEEEEe
Confidence 13456664333322222 11 12247788889988 6777777788999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
++.++.+|+++|++++++.. +.+|+++..+|.+|.+.|+++|+++|+++|+++|+|+|++
T Consensus 119 ~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~ 178 (411)
T 3nnk_A 119 VPWGEVFTPDQVEDAVKRIR-----PRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATAS 178 (411)
T ss_dssp CCTTCCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTT
T ss_pred cCCCCCCCHHHHHHHHhhCC-----CeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcc
Confidence 99999999999999998632 4588889999999999999999999999999999998873
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-15 Score=169.11 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=204.6
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccc-cccceEEEecccchHHHHHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGV-LLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~-~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
++.+.+++.+...+. +++ +++|+++++..++.+++..+..+... |. ..+...|+++..+|+++.+++..
T Consensus 73 ~l~~~la~~~~~~~~-~i~--~~~ggt~a~~~~~~~~~~~~~~~~~~-------~~~~~~gd~vl~~~~~~~~~~~~~~~ 142 (397)
T 3f9t_A 73 KAVALLGSLLNNKDA-YGH--IVSGGTEANLMALRCIKNIWREKRRK-------GLSKNEHPKIIVPITAHFSFEKGREM 142 (397)
T ss_dssp HHHHHHHHHTTCTTC-EEE--EESCHHHHHHHHHHHHHHHHHHHHHT-------TCCCCSSCEEEEETTCCTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-CEE--EecCcHHHHHHHHHHHHHHHHhhhhh-------cccCCCCeEEEECCcchhHHHHHHHH
Confidence 455566666654333 555 78899999999999998765443321 11 22456799999999999999998
Q ss_pred cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCCC---------
Q psy852 526 AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGIE--------- 580 (891)
Q Consensus 526 ~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi~--------- 580 (891)
.|.+++.||.++++.+|+++|+++|++. ....++++. ..|+.. |.++ +|++.
T Consensus 143 ~g~~~~~v~~~~~~~~d~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~ 219 (397)
T 3f9t_A 143 MDLEYIYAPIKEDYTIDEKFVKDAVEDY---DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLD 219 (397)
T ss_dssp HTCEEEEECBCTTSSBCHHHHHHHHHHS---CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCC
T ss_pred cCceeEEEeeCCCCcCCHHHHHHHHhhc---CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcc
Confidence 8999999999999999999999999872 111222222 234433 4431 22211
Q ss_pred ----------------CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-cc
Q psy852 581 ----------------YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FR 643 (891)
Q Consensus 581 ----------------~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~ 643 (891)
.+|++++++|||+++|.++|+++++++... +.+.....|+.... .....+++. ..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 291 (397)
T 3f9t_A 220 DKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGYK-RYLDVDAPYLTETR-------QATILGTRVGFG 291 (397)
T ss_dssp GGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSSCEEEEESSGGGG-GGTCEECTTSSSSE-------ECSSCSSCCSHH
T ss_pred cccccccccccccccccCCeEEEccccccCCCCCceEEEEeCHHHH-HhhccCCccccCCC-------ccccccccccch
Confidence 589999999999999999999999887544 22322234443221 122334553 45
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
.+.+|++++.++..++.+.+++..++++++.+.|++. +++++.++..++++|++.+ ...+.+.|.++|+.
T Consensus 292 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~ 361 (397)
T 3f9t_A 292 GACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDED---------YKEVCKKLRDRGIY 361 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECTT---------HHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeCC---------HHHHHHHHHhCCeE
Confidence 6889999999999999999999999999999999998 8888888888999998752 46788889999987
Q ss_pred EEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 724 HMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 724 ~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+..+. ....+ ++++..+|++|++++++.|++++
T Consensus 362 v~~~~---~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l 395 (397)
T 3f9t_A 362 VSVCN---CVKALRIVVMPHIKREHIDNFIEILNSIK 395 (397)
T ss_dssp CEECS---SSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EeccC---CCCEEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 43322 13566 99999999999999999998764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-14 Score=160.05 Aligned_cols=164 Identities=15% Similarity=0.064 Sum_probs=118.7
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCCCCCCCCccccc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLP-EKFLMYPPQGKNATTPNDIDMNI 96 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~~~~~~~~~g~~tp~~~~~~~ 96 (891)
..|+++..++...+.+...+.....+ ..++...++..++.+++++++|.+ ... .
T Consensus 20 ~~~l~~~~~~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~~~~~la~~~g~~~~~~--------v----------- 74 (386)
T 2dr1_A 20 KYKLFTAGPVACFPEVLEIMKVQMFS------HRSKEYRKVHMDTVERLREFLEVEKGEV--------L----------- 74 (386)
T ss_dssp CSEECCSSSCCCCHHHHHHTTSCCCC------TTSHHHHHHHHHHHHHHHHHHTCSSSEE--------E-----------
T ss_pred cceeecCCCcCCcHHHHHHHhccccc------ccCHHHHHHHHHHHHHHHHHhCCCCCcE--------E-----------
Confidence 46888876666667665544322211 235666889999999999999997 211 0
Q ss_pred cccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChH--HHHHHHHcCCeEEEEecCCC
Q psy852 97 EDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAMMAFVRLKILEPDDK 174 (891)
Q Consensus 97 ~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~S--v~kaa~~~~~~v~~V~~d~~ 174 (891)
.+++||+......+..+. + ++..|+++..+|++ +..++...|.+++.++++.+
T Consensus 75 ----------~~~~g~t~a~~~~~~~l~--~-------------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 129 (386)
T 2dr1_A 75 ----------LVPSSGTGIMEASIRNGV--S-------------KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG 129 (386)
T ss_dssp ----------EESSCHHHHHHHHHHHHS--C-------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred ----------EEeCChHHHHHHHHHHhh--c-------------CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC
Confidence 135677644333222221 1 12247777888988 67777777889999999999
Q ss_pred CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 175 NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 175 g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
+.+|+++|++++++.. .+.+|+++..+|.+|.+.|+++|+++|+++|+++++|.|++
T Consensus 130 ~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 186 (386)
T 2dr1_A 130 KAVKPEDLDDALRKNP----DVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSA 186 (386)
T ss_dssp CCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTT
T ss_pred CCCCHHHHHHHHhcCC----CCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEcccc
Confidence 9999999999996521 24578888999999999999999999999999999999884
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-15 Score=163.05 Aligned_cols=107 Identities=6% Similarity=-0.053 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----ceeEEEEEecCCcchhhhhhHHHHHHHHHhC
Q psy852 645 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----RLGLVCFRLRSENNLIADQNNRKLLEDINAS 720 (891)
Q Consensus 645 L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~ 720 (891)
+.++.+++.+...|+.++.++..++++++.+.|+++|+++++.+. ...+++|.+.+ ...++.+.|.++
T Consensus 250 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~ 321 (362)
T 3ffr_A 250 FLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--------LPGEINKILEPF 321 (362)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--------CHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--------CHHHHHHHHHHC
Confidence 345566666667788999999999999999999999999987622 24688888853 456888999989
Q ss_pred CcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 721 GRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 721 G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
|+.+..+....+...+ ++++..++++||++++++|+++.
T Consensus 322 gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 322 DMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp TEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9887665555555667 99999999999999999998753
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.6e-16 Score=179.84 Aligned_cols=172 Identities=22% Similarity=0.314 Sum_probs=136.7
Q ss_pred HHHHHHHHHhhccCC-ccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCcccccccc-ccceEEEecccchHHHHHHH
Q psy852 446 CELAKLFEGKVRRDP-RFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVL-LSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 446 lelAr~l~~~L~~~~-~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~-~~~~vI~~S~~aH~Sv~Kaa 523 (891)
.++++++++.+.... .-.++ +++|||++|+.++.++|.++.++.+ +.|+. .++.+||+|..+|+|+.+++
T Consensus 138 ~~~~~~l~~~~g~~~~~~~~~--~t~ggt~a~~~al~~a~~~~~~~~~------~~G~~~~~~~~v~~s~~~H~s~~~~~ 209 (511)
T 3vp6_A 138 QITLKKMREIVGWSSKDGDGI--FSPGGAISNMYSIMAARYKYFPEVK------TKGMAAVPKLVLFTSEQSHYSIKKAG 209 (511)
T ss_dssp HHHHHHHHHHHTCCSSSCEEE--EESSHHHHHHHHHHHHHHHHCTHHH------HHCGGGSCCEEEEEETTSCTHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCceE--ECCchHHHHHHHHHHHHHHhhhhhh------hcCcccCCCeEEEECCCchHHHHHHH
Confidence 344556666665432 12344 7899999999999999987643221 12322 25778999999999999999
Q ss_pred HHcCc---eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-------------
Q psy852 524 MMAFV---RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR------------- 574 (891)
Q Consensus 524 ~l~gv---~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~------------- 574 (891)
.+.|. +++.||+|++|+||+++|+++|+++.+.|..|.+|+++.|+|. |++
T Consensus 210 ~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~ 289 (511)
T 3vp6_A 210 AALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGG 289 (511)
T ss_dssp HHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGG
T ss_pred HHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchh
Confidence 98776 8999999999999999999999998888888999999998876 332
Q ss_pred ----------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCC
Q psy852 575 ----------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH 625 (891)
Q Consensus 575 ----------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~ 625 (891)
.+.|++++||+++|+|||+++|++||++++|++..+...+...+.|+....
T Consensus 290 ~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~ 350 (511)
T 3vp6_A 290 GLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQD 350 (511)
T ss_dssp GGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSS
T ss_pred hHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcc
Confidence 134677899999999999999999999999999877777777888887543
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-14 Score=156.59 Aligned_cols=137 Identities=16% Similarity=0.129 Sum_probs=101.0
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.++....+..++.+++++++|.+.... +. .+++||+.... .+..+ .
T Consensus 29 ~~~~~~~~~~~~~~~la~~~~~~~~~~------~v---------------------~~~~g~t~al~-~~~~~---~--- 74 (384)
T 3zrp_A 29 TSKEFVEALAYSLKGLRYVMGASKNYQ------PL---------------------IIPGGGTSAME-SVTSL---L--- 74 (384)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCTTSE------EE---------------------EEESCHHHHHH-HGGGG---C---
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCCc------EE---------------------EEcCCcHHHHH-HHHhh---c---
Confidence 356678888999999999999875210 00 13567764322 11111 0
Q ss_pred CCccccccccCCeEEEecCCCChH--HHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSC--VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC 208 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~S--v~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~ 208 (891)
.++..|+++..+|++ +...+...|.+++.|+++.++.+|+++|++.+++.. +.+|+++..+|.+
T Consensus 75 ---------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~npt 140 (384)
T 3zrp_A 75 ---------KPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSE-----YKLVALTHVETST 140 (384)
T ss_dssp ---------CTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSC-----EEEEEEESEETTT
T ss_pred ---------CCCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCC-----CcEEEEeCCCCCC
Confidence 122347777788877 334445567899999999999999999999998732 4688888999999
Q ss_pred ccccCHHHHHHHHHHcCCceeeecccc
Q psy852 209 CSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 209 GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
|.+.|+++|.++|+++|+++++|+|++
T Consensus 141 G~~~~l~~i~~l~~~~~~~li~D~a~~ 167 (384)
T 3zrp_A 141 GVREPVKDVINKIRKYVELIVVDGVSS 167 (384)
T ss_dssp TEECCHHHHHHHHGGGEEEEEEECTTT
T ss_pred ceECcHHHHHHHHHhcCCEEEEECccc
Confidence 999999999999999988888888873
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-14 Score=157.92 Aligned_cols=171 Identities=11% Similarity=0.028 Sum_probs=115.9
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCCC----CccccChhHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCCCCCCCCcc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCIG----FSWAASPSCTELETIVLDWLGKAIGLP-EKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~----~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~~~~~~~~~g~~tp~~~~ 93 (891)
.|+++-..+...+.++..+...+-+... ..+..++.......++.+.+++++|.+ ....
T Consensus 30 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v---------------- 93 (420)
T 1t3i_A 30 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREI---------------- 93 (420)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGE----------------
T ss_pred EEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeE----------------
Confidence 4676665555556666655554432111 122334444566777889999999983 2210
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHH----HHHHHHcCCeEEEE
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCV----EKAAMMAFVRLKIL 169 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv----~kaa~~~~~~v~~V 169 (891)
.+++||+.... ..+...+... .. +...|+++..+|++. ...+...|.+++.|
T Consensus 94 -------------~~~~g~t~a~~-~~~~~~~~~~-~~---------~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v 149 (420)
T 1t3i_A 94 -------------VYTRNATEAIN-LVAYSWGMNN-LK---------AGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFV 149 (420)
T ss_dssp -------------EEESSHHHHHH-HHHHHTHHHH-CC---------TTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEE
T ss_pred -------------EEcCChHHHHH-HHHHHhhhcc-cC---------CCCEEEECcchhHHHHHHHHHHHHhcCcEEEEe
Confidence 13567764433 2332222100 01 123477888899884 44555567799999
Q ss_pred ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 170 EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 170 ~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
++++++.+|+++|++++++. +.+|+++..+|.+|.+.|+++|.++|+++|+++++|+|++
T Consensus 150 ~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 209 (420)
T 1t3i_A 150 QLDEQESFDLEHFKTLLSEK------TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQS 209 (420)
T ss_dssp CBCTTSSBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccCCCCCcCHHHHHHhhCCC------ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhc
Confidence 99999999999999988653 4588889999999999999999999999999999999884
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-15 Score=166.16 Aligned_cols=288 Identities=12% Similarity=0.038 Sum_probs=185.6
Q ss_pred cCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q psy852 11 QVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPN 90 (891)
Q Consensus 11 ~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~ 90 (891)
+.....+|+++.+.+++...+..+.+.+. +.. ....++...++...+.+++++++|.+.... +
T Consensus 3 ~~~~~~~~~~~~~~p~p~~~~~~v~~a~~---~~~--~~~~~~~~~~~~~~l~~~la~~~g~~~~~~--------~---- 65 (416)
T 3isl_A 3 GRRELCTPLRTIMTPGPVEVDPRVLRVMS---TPV--VGQFDPAFTGIMNETMEMLRELFQTKNRWA--------Y---- 65 (416)
T ss_dssp --CCCCCCCCEECSSSSCCCCHHHHHHTT---SCC--CCTTSHHHHHHHHHHHHHHHHHTTCCCSEE--------E----
T ss_pred CccccCcccceeecCCCcCcCHHHHHHhc---ccC--CCCccHHHHHHHHHHHHHHHHHhCCCCCcE--------E----
Confidence 33445567777777665544433333222 221 123446678889999999999999875421 0
Q ss_pred CccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChH--HHHHHHHcCCeEEE
Q psy852 91 DIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAMMAFVRLKI 168 (891)
Q Consensus 91 ~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~S--v~kaa~~~~~~v~~ 168 (891)
.+++||+......+..+ .. +...|+++..+|++ +.+++...|.+++.
T Consensus 66 ----------------~~~~s~t~al~~~~~~l--~~-------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~ 114 (416)
T 3isl_A 66 ----------------PIDGTSRAGIEAVLASV--IE-------------PEDDVLIPIYGRFGYLLTEIAERYGANVHM 114 (416)
T ss_dssp ----------------EEESCHHHHHHHHHHHH--CC-------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred ----------------EecCcHHHHHHHHHHHh--cC-------------CCCEEEEecCCcccHHHHHHHHhcCCeeEE
Confidence 12456653322222222 11 12247777789998 66677777889999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccC
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFM 248 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~ 248 (891)
|+++.++.+|+++|++++++.. +.+|+++..+|.+|.+.|+++|+++|+++|+++++|++++.....
T Consensus 115 v~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-------- 181 (416)
T 3isl_A 115 LECEWGTVFDPEDIIREIKKVK-----PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCE-------- 181 (416)
T ss_dssp EECCTTCCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSC--------
T ss_pred EecCCCCCCCHHHHHHHHhhCC-----CcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCC--------
Confidence 9999999999999999998532 458899999999999999999999999999999999887311100
Q ss_pred CCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccc
Q psy852 249 NGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRD 328 (891)
Q Consensus 249 ~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (891)
T Consensus 182 -------------------------------------------------------------------------------- 181 (416)
T 3isl_A 182 -------------------------------------------------------------------------------- 181 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccC------------
Q psy852 329 AIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD------------ 396 (891)
Q Consensus 329 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~------------ 396 (891)
... +. ..+|.++.++|||+++|.++|++++++... ..+...
T Consensus 182 --------------------~~~----~~-~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~--~~~~~~~~~~~Gw~~~~~ 234 (416)
T 3isl_A 182 --------------------VKV----DE-WKIDAAIGGTQKCLSVPSGMAPITYNERVA--DVIAARKKVERGIATQAD 234 (416)
T ss_dssp --------------------CCT----TT-TTCSEEECCSSSTTCCCSSEEEEEECHHHH--HHHHTC------------
T ss_pred --------------------cch----hh-cCCCEEEecCccccCCCCCeEEEEECHHHH--HHhhcccccccccccccc
Confidence 000 00 136999999999999999999999876421 111100
Q ss_pred ccccCCCCCC---cccc-------ccccc-CCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q psy852 397 PLYLQHGHEG---AIDY-------RHWGI-PLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEI 464 (891)
Q Consensus 397 ~~y~~~~~~~---~~~~-------~~~~~-~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eV 464 (891)
.++...+... ..+. ....+ .++... ..++++.+++.+...|+.++.++..++++++.+.|.+. ++++
T Consensus 235 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~ 313 (416)
T 3isl_A 235 RAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRL 313 (416)
T ss_dssp ------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred chhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence 0011100000 0000 01111 223333 34567788888888889999999999999999999884 7777
Q ss_pred ccC
Q psy852 465 SND 467 (891)
Q Consensus 465 v~~ 467 (891)
+.+
T Consensus 314 ~~~ 316 (416)
T 3isl_A 314 FGD 316 (416)
T ss_dssp CSC
T ss_pred ccC
Confidence 754
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-13 Score=152.38 Aligned_cols=171 Identities=15% Similarity=-0.002 Sum_probs=115.8
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCC----CCCccccChhHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCCCCCCCCcc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGC----IGFSWAASPSCTELETIVLDWLGKAIGLP-EKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~----~~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~~~~~~~~~g~~tp~~~~ 93 (891)
.|+++-.++...+.++..+...+-+. ....+..+........++.+++++++|.+ ....
T Consensus 25 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v---------------- 88 (406)
T 1kmj_A 25 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEEL---------------- 88 (406)
T ss_dssp EECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGE----------------
T ss_pred EEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeE----------------
Confidence 57777766666677766555444322 11122222334566777889999999983 2211
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH----HHHcCCeEEEE
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKIL 169 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka----a~~~~~~v~~V 169 (891)
.+++||+.... ..+...+... . .+...|+++..+|+++... +...|.+++.+
T Consensus 89 -------------~~~~g~t~a~~-~~~~~~~~~~--~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 144 (406)
T 1kmj_A 89 -------------VFVRGTTEGIN-LVANSWGNSN--V--------RAGDNIIISQMEHHANIVPWQMLCARVGAELRVI 144 (406)
T ss_dssp -------------EEESSHHHHHH-HHHHHTHHHH--C--------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEE
T ss_pred -------------EEeCChhHHHH-HHHHHhhhhc--C--------CCCCEEEEecccchHHHHHHHHHHHhCCCEEEEE
Confidence 13567764433 3332222100 0 0122477788888876433 34567799999
Q ss_pred ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 170 EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 170 ~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
++++++.+|+++|++++++. +.+|+++..+|.+|.+.|+++|+++|+++|+++++|+|++
T Consensus 145 ~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~ 204 (406)
T 1kmj_A 145 PLNPDGTLQLETLPTLFDEK------TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 204 (406)
T ss_dssp CBCTTSCBCGGGHHHHCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred ecCCCCCcCHHHHHHHhccC------CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhh
Confidence 99999999999999988653 4688889999999999999999999999999999999984
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-16 Score=179.74 Aligned_cols=175 Identities=41% Similarity=0.720 Sum_probs=126.4
Q ss_pred HHHHHHHHhhccCCcc--------ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH
Q psy852 447 ELAKLFEGKVRRDPRF--------EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC 518 (891)
Q Consensus 447 elAr~l~~~L~~~~~~--------eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S 518 (891)
+.++++++.+...+.+ .++ +|+|||++|+.+++++|..+.++.+...+...+....++.+||+|..+|+|
T Consensus 117 ~~~~~la~l~g~~~~~~~~~~~~~~~v--~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s 194 (486)
T 1js3_A 117 VMMDWLGKMLQLPEAFLAGEAGEGGGV--IQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS 194 (486)
T ss_dssp HHHHHHHHHTTCCGGGCCTTTCSCEEE--EESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH
T ss_pred HHHHHHHHHhCCCchhcccCCCCCCeE--EcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHH
Confidence 3455666666543211 233 789999999999999998765432110000000001236689999999999
Q ss_pred HHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----h-----
Q psy852 519 VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----K----- 575 (891)
Q Consensus 519 v~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~----- 575 (891)
+.+++.+.|++++.||+|++|+||+++|+++|+++++.|..|++|+.+.|+|. |++ |
T Consensus 195 ~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~ 274 (486)
T 1js3_A 195 VERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAY 274 (486)
T ss_dssp HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhh
Confidence 99999999999999999999999999999999999888888999999888765 332 1
Q ss_pred -------------hcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCcccc
Q psy852 576 -------------SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQH 623 (891)
Q Consensus 576 -------------ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~ 623 (891)
+.|++.+||+++|+|||+++|++||++++|++..+.+.+...+.|+..
T Consensus 275 g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~ 335 (486)
T 1js3_A 275 AGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKH 335 (486)
T ss_dssp GGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC--------
T ss_pred HHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCC
Confidence 234567999999999999999999999999986655555555667654
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-14 Score=155.18 Aligned_cols=275 Identities=13% Similarity=0.079 Sum_probs=183.5
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCC--CCC-ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGC--IGF-SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~--~~~-~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
.|+++-.++...+.++..+...+.+. |.. .+..++.......++.+++++++|.+....
T Consensus 2 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v------------------ 63 (382)
T 4eb5_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTV------------------ 63 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEE------------------
T ss_pred eeeccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeE------------------
Confidence 37777777777888877776655432 111 244455667888899999999999864311
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH---cCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~---~~~~v~~V~~d 172 (891)
.+++||+....+.+..+.+.... +...|+++..+|+++..++.. .|.+++.|++|
T Consensus 64 -----------~~~~g~t~a~~~~~~~l~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 121 (382)
T 4eb5_A 64 -----------VFTSGATEANNLAIIGYAMRNAR-----------KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG 121 (382)
T ss_dssp -----------EEESSHHHHHHHHHHHHHHHHGG-----------GCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBC
T ss_pred -----------EEcCchHHHHHHHHHHHHhhccC-----------CCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccC
Confidence 13567765433333333211000 112488889999999888753 47799999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKT 252 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~ 252 (891)
++|.+|+++|++.+++. +.+|+++..+|.+|.+.|+++|.++|+++|++ ++|+|++. ..
T Consensus 122 ~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~-g~------------- 180 (382)
T 4eb5_A 122 KYGEVDVSFIDQKLRDD------TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASV-GQ------------- 180 (382)
T ss_dssp TTSCBCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTB-TT-------------
T ss_pred CCCccCHHHHHHHhcCC------CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhc-CC-------------
Confidence 99999999999988653 45888999999999999999999999999988 88888841 00
Q ss_pred ccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccc
Q psy852 253 SFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFD 332 (891)
Q Consensus 253 ~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (891)
T Consensus 181 -------------------------------------------------------------------------------- 180 (382)
T 4eb5_A 181 -------------------------------------------------------------------------------- 180 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccc
Q psy852 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 412 (891)
Q Consensus 333 ~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 412 (891)
. ...+... .+|.++.++||+ ++|.+.|++++++...+. +.+...... .
T Consensus 181 -------------~-~~~~~~~-----~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~------~~~~~~~~~------~ 228 (382)
T 4eb5_A 181 -------------I-EVDVEKI-----GADMLTISSNDI-YGPKGVGALWIRKEAKLQ------PVILGGGQE------N 228 (382)
T ss_dssp -------------B-CCCHHHH-----TCSEEEEETGGG-TCCSSCEEEEEETTCCCC------CSSCSSCTG------G
T ss_pred -------------c-ccCcccc-----CCCEEEeehHHh-cCCCceEEEEEccccccC------ceecCCCcc------c
Confidence 0 0000000 258999999997 778889999998753121 111110000 0
Q ss_pred cccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 413 WGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 413 ~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
....++-.. ...+++.+++.+. +++.++.++..++++++.+.|++.++++++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 283 (382)
T 4eb5_A 229 GLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGH 283 (382)
T ss_dssp GTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSC
T ss_pred cccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCC
Confidence 001122222 2345556666543 47899999999999999999998888887643
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.8e-16 Score=174.31 Aligned_cols=164 Identities=12% Similarity=0.038 Sum_probs=103.0
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcC--CCCCc----cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAIG--CIGFS----WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND 91 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~n--~~~~~----~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~ 91 (891)
..|+.+.-+.+..+.++..|...+.+ .|+.+ ...++.+.++-.++.+.+++++|.++...
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~e-------------- 92 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYK-------------- 92 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEE--------------
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCce--------------
Confidence 45777777777888998888654422 22221 22466677888889999999999964310
Q ss_pred ccccccccCCCCCCCCc-ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEe
Q psy852 92 IDMNIEDYMTPANQPQS-LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 170 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~-~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~ 170 (891)
+ .| |+|||.+.|+.+.++.+.. . .-+++.++..+|.++.. +...| ++..|+
T Consensus 93 v--------------if~t~~~T~a~n~ai~~l~~~g--d----------~v~~~~~~~~~~~~~~~-a~~~G-~v~~v~ 144 (386)
T 3qm2_A 93 V--------------LFCHGGGRGQFAGVPLNLLGDK--T----------TADYVDAGYWAASAIKE-AKKYC-APQIID 144 (386)
T ss_dssp E--------------EEEESCTTHHHHHHHHHHCTTC--C----------EEEEEESSHHHHHHHHH-HTTTS-EEEEEE
T ss_pred E--------------EEEcCCchHHHHHHHHhccCCC--C----------eEEEEeCCHHHHHHHHH-HHHhC-CeEEEe
Confidence 0 24 4789888777776653211 0 01123333334433322 22235 899999
Q ss_pred cC--CCCc-ccHHHHHHHHHhhhhcCCcceEEEeecccCccccc-cCHHHHHHHHHHcCCceeeeccc
Q psy852 171 PD--DKNS-LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-DNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 171 ~d--~~g~-id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-Dpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+| ++|. +++++++.+++++ +.+|+++..+|.+|++ +||++|+ +|+++||||++
T Consensus 145 ~~~~~~G~~~~~~~~~~~l~~~------t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~q 201 (386)
T 3qm2_A 145 AKITVDGKRAVKPMREWQLSDN------AAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSS 201 (386)
T ss_dssp CEEEETTEEEECCGGGCCCCTT------CSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTT
T ss_pred cCcccCCCCCCchHHHhhcCCC------CcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEccc
Confidence 99 7887 8999888777654 3478999999999995 9999996 78889999988
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.2e-14 Score=152.88 Aligned_cols=151 Identities=13% Similarity=0.009 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q psy852 26 SGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQ 105 (891)
Q Consensus 26 ~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~ 105 (891)
+.+..|.++..+.... . ...++.......++.+++++++|.+....
T Consensus 9 p~~~~~~v~~a~~~~~-~-----~~~~~~~~~~~~~l~~~la~~~g~~~~~i---------------------------- 54 (352)
T 1iug_A 9 PVRLHPKALEALARPQ-L-----HHRTEAAREVFLKARGLLREAFRTEGEVL---------------------------- 54 (352)
T ss_dssp SCCCCHHHHHHHHSCC-C-----CTTSHHHHHHHHHHHHHHHHHHTCSSEEE----------------------------
T ss_pred CCCCCHHHHHHhccCC-C-----CccCHHHHHHHHHHHHHHHHHhCCCCceE----------------------------
Confidence 3345566665554333 2 12456677788889999999999864211
Q ss_pred CCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHH--HHHHHcCCeEEEEecCCCCcccHHHHH
Q psy852 106 PQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVE--KAAMMAFVRLKILEPDDKNSLRGATLR 183 (891)
Q Consensus 106 ~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~--kaa~~~~~~v~~V~~d~~g~id~~~L~ 183 (891)
.+++||+......+..+ . . +...|+++..+|++.. +.+...|.+++.|+++++|.+|+++|+
T Consensus 55 -~~~~g~t~a~~~~~~~~-~-~-------------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~ 118 (352)
T 1iug_A 55 -ILTGSGTLAMEALVKNL-F-A-------------PGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVA 118 (352)
T ss_dssp -EEESCHHHHHHHHHHHH-C-C-------------TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSC
T ss_pred -EEcCchHHHHHHHHHhc-c-C-------------CCCeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHh
Confidence 13567764433322222 1 1 1124778888999975 333346789999999999999999887
Q ss_pred HHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc--CCceeeecccc
Q psy852 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF--DVWLHVDGAYA 235 (891)
Q Consensus 184 ~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~--~~~lHvDaA~G 235 (891)
+ + .+.+|+++..+|.+|.+.|+++|.++|+++ |+++|+|+|++
T Consensus 119 ~---~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~ 163 (352)
T 1iug_A 119 K---E------GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTS 163 (352)
T ss_dssp C---S------SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTT
T ss_pred c---c------CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCcc
Confidence 6 1 245788899999999999999999999999 99999999883
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-14 Score=156.84 Aligned_cols=278 Identities=15% Similarity=0.129 Sum_probs=187.6
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc--CCCCC----ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAI--GCIGF----SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~--n~~~~----~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
.|+++..+++..|.++..+...+. +..+. .+..+....+...++.+++++++|.+....
T Consensus 24 iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v--------------- 88 (423)
T 3lvm_A 24 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREI--------------- 88 (423)
T ss_dssp EECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGE---------------
T ss_pred EeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeE---------------
Confidence 588888777777887776665544 22221 333455667888889999999999864421
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKIL 169 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V 169 (891)
.+++||+....+.+..+.+.... +...|+++..+|++...++. ..+.+++.|
T Consensus 89 --------------~~~~ggt~a~~~a~~~l~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v 143 (423)
T 3lvm_A 89 --------------VFTSGATESDNLAIKGAANFYQK-----------KGKHIITSKTEHKAVLDTCRQLEREGFEVTYL 143 (423)
T ss_dssp --------------EEESSHHHHHHHHHHHHHHHHTT-----------TCCEEEEETTSCHHHHHHHHHHHHTTCEEEEE
T ss_pred --------------EEeCChHHHHHHHHHHHHHhhcc-----------CCCEEEECCccchHHHHHHHHHHHcCCEEEEe
Confidence 14567775444433334332110 12348888999999988874 347899999
Q ss_pred ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCC
Q psy852 170 EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMN 249 (891)
Q Consensus 170 ~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~ 249 (891)
+++++|.+|+++|++++++. +.+|+++..+|.+|.+.|+++|+++|+++|++|++|.|+++...-
T Consensus 144 ~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~--------- 208 (423)
T 3lvm_A 144 APQRNGIIDLKELEAAMRDD------TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP--------- 208 (423)
T ss_dssp CCCTTSCCCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---------
T ss_pred ccCCCCccCHHHHHHhcCCC------cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCC---------
Confidence 99999999999999998754 468889999999999999999999999999999999988542110
Q ss_pred CCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccccc
Q psy852 250 GKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDA 329 (891)
Q Consensus 250 g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (891)
T Consensus 209 -------------------------------------------------------------------------------- 208 (423)
T 3lvm_A 209 -------------------------------------------------------------------------------- 208 (423)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCccc
Q psy852 330 IFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAID 409 (891)
Q Consensus 330 ~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~ 409 (891)
... ... .+|.++.++|| .++|.+.|++++++..... + .+.+.......
T Consensus 209 -------------------~~~----~~~-~~di~~~s~sK-~~g~~g~G~~~~~~~~~~~--~--~~~~~~~~~~~--- 256 (423)
T 3lvm_A 209 -------------------IDL----SQL-KVDLMSFSGHK-IYGPKGIGALYVRRKPRVR--I--EAQMHGGGHER--- 256 (423)
T ss_dssp -------------------CCT----TTS-CCSEEEEESTT-TTSCSSCEEEEECBTTBCC--C--CCSSCSSCTTT---
T ss_pred -------------------cCh----hhc-CCCEEEechHH-hcCCCCeEEEEEeccccCC--C--CccccCCcccc---
Confidence 000 000 25899999999 6788889999998642111 1 11111111000
Q ss_pred ccccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 410 YRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 410 ~~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
....++-.. ...++..+++.+... +.++.++..++++++.+.|.+.++++++.+
T Consensus 257 ---~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 311 (423)
T 3lvm_A 257 ---GMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGD 311 (423)
T ss_dssp ---TTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTEEEESC
T ss_pred ---cccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 000112222 233445556554433 889999999999999999999889888754
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-14 Score=154.03 Aligned_cols=280 Identities=17% Similarity=0.082 Sum_probs=182.3
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 16 QHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 16 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
.++.|+++..+....+.++..+.....+ ..++........+.+++++++|.+....
T Consensus 7 ~~~~yl~~~~~~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~g~~~~~v------------------ 62 (392)
T 2z9v_A 7 ADPVITLTAGPVNAYPEVLRGLGRTVLY------DYDPAFQLLYEKVVDKAQKAMRLSNKPV------------------ 62 (392)
T ss_dssp SCCSEECSSSCCCCCHHHHHHTTSCCCC------TTSHHHHHHHHHHHHHHHHHTTCSSCCE------------------
T ss_pred CCcceeecCCCcCCCHHHHHHHhccccc------cccHHHHHHHHHHHHHHHHHhCCCCCEE------------------
Confidence 3567888877666777776655443322 1346667778889999999999863311
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHH--HHHHHcCCeEEEEecCC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVE--KAAMMAFVRLKILEPDD 173 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~--kaa~~~~~~v~~V~~d~ 173 (891)
.+++||+......+..+ .. +...|+++..+|++.. ..+...|.+++.|++|+
T Consensus 63 -----------~~t~g~t~a~~~~~~~~--~~-------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 116 (392)
T 2z9v_A 63 -----------ILHGEPVLGLEAAAASL--IS-------------PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY 116 (392)
T ss_dssp -----------EESSCTHHHHHHHHHHH--CC-------------TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT
T ss_pred -----------EEeCCchHHHHHHHHHh--cC-------------CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCC
Confidence 13467764333222222 11 1123777788898873 22233577999999999
Q ss_pred CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcc
Q psy852 174 KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTS 253 (891)
Q Consensus 174 ~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~ 253 (891)
+|.+|+++|++++++. ..+.+|+++..+|.+|.+.|+++|.++|+++|+++++|+|++....
T Consensus 117 ~~~~d~~~l~~~l~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-------------- 178 (392)
T 2z9v_A 117 NEAIDPQAVADMLKAH----PEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGM-------------- 178 (392)
T ss_dssp TSCCCHHHHHHHHHHC----TTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTB--------------
T ss_pred CCCCCHHHHHHHHhcC----CCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCc--------------
Confidence 9999999999999752 1245888899999999999999999999999999999998831100
Q ss_pred cccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccce
Q psy852 254 FDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDV 333 (891)
Q Consensus 254 ~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (891)
T Consensus 179 -------------------------------------------------------------------------------- 178 (392)
T 2z9v_A 179 -------------------------------------------------------------------------------- 178 (392)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhccc-C--c--cccCCCCC-Cc
Q psy852 334 WLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-D--P--LYLQHGHE-GA 407 (891)
Q Consensus 334 ~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~-~--~--~y~~~~~~-~~ 407 (891)
...+.. . .+|.++.++|||+++|.+.|++++++.. ...+.. . + .|...... ..
T Consensus 179 --------------~~~~~~----~-~~d~~~~s~sK~~~~~~g~G~l~~~~~~--~~~l~~~~~g~~~~~~~~~~~~~~ 237 (392)
T 2z9v_A 179 --------------KTHPED----C-KADIYVTGPNKCLGAPPGLTMMGVSERA--WAKMKANPLAPRASMLSIVDWENA 237 (392)
T ss_dssp --------------SCCGGG----G-TCSEEEECSSSTTCCCSCCEEEEECHHH--HHHHHTCTTSCCSSTTCSGGGTTT
T ss_pred --------------cccccc----c-cceEEEecCcccccCCCceeEEEECHHH--HHHhhhccCCCCceeccHHHHHhh
Confidence 000000 0 2589999999999999999999997642 111211 0 1 12110000 00
Q ss_pred ccccccccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 408 IDYRHWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 408 ~~~~~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
+.. .....++.... .++++.+++.+...|+.++.++..++++++.+.|++. +++++.
T Consensus 238 ~~~-~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 295 (392)
T 2z9v_A 238 WSR-DKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWA 295 (392)
T ss_dssp TST-TSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSS
T ss_pred hcc-cCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeecc
Confidence 000 00112233332 3456778887777779999999999999999999876 777664
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=171.66 Aligned_cols=169 Identities=22% Similarity=0.313 Sum_probs=129.6
Q ss_pred HHHHHHHHhhccCC-ccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCcccccccc-ccceEEEecccchHHHHHHHH
Q psy852 447 ELAKLFEGKVRRDP-RFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVL-LSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~-~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~-~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
++.+++++.+.... .-.++ +++|||++|+.++.++|.+..+..+ +.|.. .++++|++|..+|+|+.+++.
T Consensus 136 ~~~~~la~~~g~~~~~~~~~--~t~ggtea~~~al~~~~~~~~~~~~------~~G~~~~~~~~v~~s~~~h~s~~~~~~ 207 (504)
T 2okj_A 136 ITLKKMREIVGWSSKDGDGI--FSPGGAISNMYSIMAARYKYFPEVK------TKGMAAVPKLVLFTSEQSHYSIKKAGA 207 (504)
T ss_dssp HHHHHHHHHHTCCSSSCEEE--EESSHHHHHHHHHHHHHHHHCTTHH------HHCGGGSCCEEEEEETTSCTHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCEE--EeCCcHHHHHHHHHHHHHHHhhHHh------hcCccccCCeEEEECCcchHHHHHHHH
Confidence 34456666665421 22455 7899999999999999986532211 01211 135689999999999999998
Q ss_pred HcCc---eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh--------------
Q psy852 525 MAFV---RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-------------- 574 (891)
Q Consensus 525 l~gv---~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-------------- 574 (891)
+.+. +++.||+|++|+||+++|+++|+++.++|..|.+|+.+.|++. |++
T Consensus 208 ~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~ 287 (504)
T 2okj_A 208 ALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGG 287 (504)
T ss_dssp HTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred HcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhH
Confidence 7665 8999999999999999999999988877878999999988775 322
Q ss_pred ---------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCcccc
Q psy852 575 ---------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQH 623 (891)
Q Consensus 575 ---------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~ 623 (891)
.++|++++||+++|+|||+++|++||++++|++..+...+...+.|+.+
T Consensus 288 ~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~ 345 (504)
T 2okj_A 288 LLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQ 345 (504)
T ss_dssp GGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCC
T ss_pred HHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccC
Confidence 1356678999999999999999999999999986665555566777754
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-14 Score=155.06 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=124.2
Q ss_pred CCCccccccCCCCCCHHHHHHHHHHHhc---CCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy852 15 WQHPRFHAYFPSGNSYPSVLADMLSDAI---GCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND 91 (891)
Q Consensus 15 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~---n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~ 91 (891)
..+..|+++..+++..|.++..+...+. .+....+..++...++..++.+++++++|.+.+..
T Consensus 18 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v-------------- 83 (400)
T 3vax_A 18 GSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDEL-------------- 83 (400)
T ss_dssp ----CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGE--------------
T ss_pred cCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcE--------------
Confidence 4456789988777777777766655542 22222344455667888889999999999874321
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCe-EEEecCCCChHHHHHHHH---cCCeEE
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKL-MAYCSKEAHSCVEKAAMM---AFVRLK 167 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~-~v~~S~~~H~Sv~kaa~~---~~~~v~ 167 (891)
.+++||+....+.+..+.+.... +.. .|+++..+|+++..++.. .|.+++
T Consensus 84 ---------------~~~~g~t~al~~~~~~l~~~~~~-----------~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~ 137 (400)
T 3vax_A 84 ---------------IFTSGATESNNIALLGLAPYGER-----------TGRRHIITSAIEHKAVLEPLEHLAGRGFEVD 137 (400)
T ss_dssp ---------------EEESCHHHHHHHHHHTTHHHHHH-----------HTCCEEEEETTSCHHHHHHHHHHHTTTCEEE
T ss_pred ---------------EEeCCHHHHHHHHHHHHHHhhcc-----------CCCCEEEECccccHhHHHHHHHHHhcCCeEE
Confidence 13567764433322222211100 112 488889999999887743 477999
Q ss_pred EEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 168 ILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 168 ~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
.|++|++|.+|+++|++++++. +.+|+++..+|.+|.+.|+++|.++|+++|+++++|+|++
T Consensus 138 ~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~ 199 (400)
T 3vax_A 138 FLTPGPSGRISVEGVMERLRPD------TLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQG 199 (400)
T ss_dssp EECCCTTCCCCHHHHHTTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTT
T ss_pred EEccCCCCCcCHHHHHHhcCCC------ceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhh
Confidence 9999999999999999988654 4689999999999999999999999999998888888883
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=163.99 Aligned_cols=290 Identities=10% Similarity=0.044 Sum_probs=182.3
Q ss_pred cccccCCCCCCHHHH---HHHHHHHhcCCCCCccccC-hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 19 RFHAYFPSGNSYPSV---LADMLSDAIGCIGFSWAAS-PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~---~~~~l~~~~n~~~~~~~~~-p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
.|+++-..+...+.+ +.+.+....+.+...|..+ +....+...+.+++++++|.++...
T Consensus 69 iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v----------------- 131 (465)
T 3e9k_A 69 IYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEI----------------- 131 (465)
T ss_dssp EECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGE-----------------
T ss_pred EEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCE-----------------
Confidence 477776655544434 5555544334333334322 2334555667899999999875421
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHH----HHHHcCCe-----
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AAMMAFVR----- 165 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~k----aa~~~~~~----- 165 (891)
.+++|++. + +..+..+..+.. ..+..|+++..+|+|... .+...|.+
T Consensus 132 ------------~~t~g~t~-a-l~~~~~~~~~~~----------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~ 187 (465)
T 3e9k_A 132 ------------ALMNALTV-N-LHLLMLSFFKPT----------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESM 187 (465)
T ss_dssp ------------EECSCHHH-H-HHHHHHHHCCCC----------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHE
T ss_pred ------------EEECCHHH-H-HHHHHHHhcccc----------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeee
Confidence 13456643 2 222222211110 123458889999988554 44445544
Q ss_pred EEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCC
Q psy852 166 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFR 245 (891)
Q Consensus 166 v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~ 245 (891)
+..++.+.++.+|+++|+++|++.. ..+.+|+++..+|.+|.+.|+++|.++|+++|+++|+|+|++....-
T Consensus 188 v~~~~~~~~~~~d~~~l~~~i~~~~---~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~----- 259 (465)
T 3e9k_A 188 RMIKPREGEETLRIEDILEVIEKEG---DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVE----- 259 (465)
T ss_dssp EEECCCTTCSSCCHHHHHHHHHHHG---GGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC-----
T ss_pred EEEecCCCCCccCHHHHHHHHHhcC---CCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcC-----
Confidence 4456778889999999999997531 12568999999999999999999999999999999999888421110
Q ss_pred ccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccc
Q psy852 246 PFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQS 325 (891)
Q Consensus 246 ~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (891)
T Consensus 260 -------------------------------------------------------------------------------- 259 (465)
T 3e9k_A 260 -------------------------------------------------------------------------------- 259 (465)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCC-ccCCceEEEEeccccchhhcc-cCccccCCC
Q psy852 326 YRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALV-VDPLYLQHG 403 (891)
Q Consensus 326 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~-~p~~~g~~~~r~~~~~~~~~~-~~~~y~~~~ 403 (891)
..+.. ..+|.++.++||++. +|.+.|+++++++.. ..+. ....|..+.
T Consensus 260 -----------------------~~~~~-----~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~--~~~~~~~~g~~~~~ 309 (465)
T 3e9k_A 260 -----------------------LYLHD-----WGVDFACWCSYKYLNAGAGGIAGAFIHEKHA--HTIKPALVGWFGHE 309 (465)
T ss_dssp -----------------------CCHHH-----HTCCEEEECSSSTTCCCTTCCCEEEECGGGT--TTSCCSSCCGGGBC
T ss_pred -----------------------Cchhh-----cCCCEEEECcccccccCCCceEEEEEcHHHH--hhcCCcccCccCCC
Confidence 00000 036999999999984 899899999976531 1111 011111110
Q ss_pred --------CCCcccccccccCCCCC--hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccC----------Cccc
Q psy852 404 --------HEGAIDYRHWGIPLSRR--FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD----------PRFE 463 (891)
Q Consensus 404 --------~~~~~~~~~~~~~~sr~--~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~----------~~~e 463 (891)
....+......++.+.+ ...+++++++..+...|+.++.++..++++++.+.|.+. ++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 389 (465)
T 3e9k_A 310 LSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVN 389 (465)
T ss_dssp HHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEE
T ss_pred CCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeE
Confidence 00011111122232222 346788999999988899999999999999999999875 7888
Q ss_pred cccC
Q psy852 464 ISND 467 (891)
Q Consensus 464 Vv~~ 467 (891)
++.+
T Consensus 390 ~~~p 393 (465)
T 3e9k_A 390 IITP 393 (465)
T ss_dssp ECSC
T ss_pred EeCC
Confidence 8764
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=157.02 Aligned_cols=250 Identities=14% Similarity=0.096 Sum_probs=166.4
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.+|.....+.++.+++++++|.+.... +. .+++||+.........+ ..
T Consensus 27 ~~~~~~~~~~~l~~~la~~~g~~~~~~------~v---------------------~~t~g~t~a~~~~~~~~-~~---- 74 (353)
T 2yrr_A 27 LDPEVLRVNRAIQERLAALFDPGEGAL------VA---------------------ALAGSGSLGMEAGLANL-DR---- 74 (353)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCCTTCE------EE---------------------EESSCHHHHHHHHHHTC-SC----
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCCc------eE---------------------EEcCCcHHHHHHHHHHh-cC----
Confidence 467778889999999999999862100 01 13467764322222111 10
Q ss_pred CCccccccccCCeEEEecCCCChHH--HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCV--EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC 208 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv--~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~ 208 (891)
..|+++..+|++. .+.+...|.+++.|++|++|.+|+++|++.+++. .+.+|+++..+|.+
T Consensus 75 ------------d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~npt 137 (353)
T 2yrr_A 75 ------------GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRR-----RYRMVALVHGETST 137 (353)
T ss_dssp ------------CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHS-----CCSEEEEESEETTT
T ss_pred ------------CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhC-----CCCEEEEEccCCCc
Confidence 1267777788885 4444566789999999999999999999999862 14578889999999
Q ss_pred ccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhh
Q psy852 209 CSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISK 288 (891)
Q Consensus 209 GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 288 (891)
|.+.|+++|.++|+++|+++|+|+|++. ... |
T Consensus 138 G~~~~~~~i~~l~~~~~~~li~D~a~~~-~~~--------------------------~--------------------- 169 (353)
T 2yrr_A 138 GVLNPAEAIGALAKEAGALFFLDAVTTL-GML--------------------------P--------------------- 169 (353)
T ss_dssp TEECCHHHHHHHHHHHTCEEEEECTTTT-TTS--------------------------C---------------------
T ss_pred ceecCHHHHHHHHHHcCCeEEEEcCccc-ccc--------------------------c---------------------
Confidence 9999999999999999999999999831 100 0
Q ss_pred hcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeC
Q psy852 289 LKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNV 368 (891)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~ 368 (891)
..+... .+|.+++++
T Consensus 170 ------------------------------------------------------------~~~~~~-----~~d~~~~s~ 184 (353)
T 2yrr_A 170 ------------------------------------------------------------FSMRAM-----GVDYAFTGS 184 (353)
T ss_dssp ------------------------------------------------------------CCHHHH-----TCSEEECCT
T ss_pred ------------------------------------------------------------cccccc-----CceEEEecC
Confidence 000000 248999999
Q ss_pred CCcCCccCCceEEEEeccccchhhcccCc-cccCCCCCCcccccccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHH
Q psy852 369 NKWLLTAFDSSCLWVADRYKLTSALVVDP-LYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHC 446 (891)
Q Consensus 369 HK~~~~p~~~g~~~~r~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~l 446 (891)
|||+++|.++|++++++... ..+...+ .|+........ .......++... ...+++.+++.+...|+.++.++..
T Consensus 185 ~K~~~~~~g~G~~~~~~~~~--~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 261 (353)
T 2yrr_A 185 QKCLSAPPGLAPIAASLEAR--KAFTGKRGWYLDLARVAEH-WERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAR 261 (353)
T ss_dssp TSTTCCCSSCEEEEECHHHH--HHCCCCSCSTTCHHHHHHH-HTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cccccCCCceEEEEECHHHH--HHhccCCCccccHHHHhhh-hhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999986521 1121111 11110000000 000111233333 3355677888887788999999999
Q ss_pred HHHHHHHHhhccCCcccccc
Q psy852 447 ELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~ 466 (891)
++++++.+.|++. +++++.
T Consensus 262 ~~~~~l~~~L~~~-g~~~~~ 280 (353)
T 2yrr_A 262 EVYAWVLEELKAR-GFRPYP 280 (353)
T ss_dssp HHHHHHHHHHHHT-TCEESC
T ss_pred HHHHHHHHHHHHC-CCcccc
Confidence 9999999999886 777764
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-13 Score=154.78 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=123.5
Q ss_pred CccccccCCCCCCHHHHHHHHHHHhcCC---CCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 17 HPRFHAYFPSGNSYPSVLADMLSDAIGC---IGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 17 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~---~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
...|+++-.++...|.++..+....-+. ....|..++...++..++.+++++++|.+....
T Consensus 18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v---------------- 81 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDI---------------- 81 (432)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGE----------------
T ss_pred CcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeE----------------
Confidence 4568888766667777776666554321 122344455677888999999999999864321
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHh------ccccCCccccccccCCeEEEecCCCChHHHHHHH-H---cC
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRG------QKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-M---AF 163 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~------~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~---~~ 163 (891)
.+++||+....+.+..+.+. ..+..=-+..........|++|..+|+|+.+++. + .|
T Consensus 82 -------------~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g 148 (432)
T 3a9z_A 82 -------------IFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQV 148 (432)
T ss_dssp -------------EEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTS
T ss_pred -------------EEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcC
Confidence 14567765444333333321 1110000000001122468899999999988763 2 57
Q ss_pred CeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcC----------Cceeeec
Q psy852 164 VRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFD----------VWLHVDG 232 (891)
Q Consensus 164 ~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~----------~~lHvDa 232 (891)
.+++.|++++ +|.+|+++|++++++. +.+|+++..+|.+|.+.|+++|.++|++++ +++|+|+
T Consensus 149 ~~v~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDe 222 (432)
T 3a9z_A 149 AEVTFVPVSKVNGQVEVEDILAAVRPT------TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDA 222 (432)
T ss_dssp CEEEEECCCTTTSSCCHHHHHHTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEEC
T ss_pred cEEEEEecCcccCCcCHHHHHHhccCC------ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEc
Confidence 8999999986 8899999999988643 468899999999999999999999999997 7777777
Q ss_pred cc
Q psy852 233 AY 234 (891)
Q Consensus 233 A~ 234 (891)
||
T Consensus 223 a~ 224 (432)
T 3a9z_A 223 AQ 224 (432)
T ss_dssp TT
T ss_pred hh
Confidence 77
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=168.22 Aligned_cols=161 Identities=23% Similarity=0.327 Sum_probs=122.1
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccc--cceEEEecccchHHHHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLL--SKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~--~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
++.+++++.+...+.-.++ +++|||++|+.++.+||+++..+... ......|... ++++|++|..+|+|+.+++.
T Consensus 144 ~~~~~la~~~g~~~~~~~~--~t~ggt~a~~~al~~ar~~~~~~~~~-~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~ 220 (497)
T 2qma_A 144 KVVNWLCDKYDLSEKADGI--FTSGGTQSNQMGLMLARDWIADKLSG-HSIQKLGLPDYADKLRIVCSKKSHFTVQKSAS 220 (497)
T ss_dssp HHHHHHHHHTTCCTTCEEE--EESSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHCSCGGGGGEEEEEETTSCTHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCeE--EcCCchHHHHHHHHHHHHHHHHhhcc-cchhhcccccccCCeEEEECCCchHHHHHHHH
Confidence 3455677777543323555 78999999999999999876532210 0000122211 46689999999999999998
Q ss_pred HcCc---eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----h--------
Q psy852 525 MAFV---RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----K-------- 575 (891)
Q Consensus 525 l~gv---~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~-------- 575 (891)
+++. +++.||+|++++||+++|+++|+++.+.+..|++|+.+.|++. |.+ |
T Consensus 221 ~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~ 300 (497)
T 2qma_A 221 WMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGA 300 (497)
T ss_dssp HTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred HcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHH
Confidence 8755 7999999999999999999999988777777888888887765 332 1
Q ss_pred ---------hcCCCCccEEEEcCcccCCcccccEEEEEeCCccc
Q psy852 576 ---------SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610 (891)
Q Consensus 576 ---------ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L 610 (891)
++|++.+||+++|+|||+++|++||++++|++..+
T Consensus 301 ~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~ 344 (497)
T 2qma_A 301 LILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF 344 (497)
T ss_dssp GGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGG
T ss_pred HHhCcchHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHH
Confidence 34566899999999999999999999999988644
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=159.74 Aligned_cols=285 Identities=15% Similarity=0.136 Sum_probs=183.8
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++++++++.+.. +. .++ +++||++++..++.++|....++ |-...+..|+++..+|.+..+++.+.
T Consensus 111 ~l~~~la~~~g~-~~-~~~--~~~ggt~a~~~al~~~~~~~~~~----------Gd~~~r~~Vlv~~~~h~~~~~~~~~~ 176 (474)
T 1wyu_B 111 ELGEYLKALTGM-DA-ITL--EPAAGAHGELTGILIIRAYHEDR----------GEGRTRRVVLVPDSAHGSNPATASMA 176 (474)
T ss_dssp HHHHHHHHHHTC-SE-EEC--CCSSHHHHHHHHHHHHHHHHHHT----------TCTTTCCEEEEETTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHCC-Cc-eee--cChHHHHHHHHHHHHHHHHHHhc----------CCccCCCEEEEeCCcChhhHHHHHHC
Confidence 344455554432 22 233 67899999999999998754322 10013457888999999999999999
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe--cCCcc-c--------hhhh-----hcCC-----------
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST--TLGTT-S--------CYRK-----SQGI----------- 579 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva--taGTT-~--------c~~~-----ldGi----------- 579 (891)
|++++.||++++|.+|+++|+++|+++++ .++++. ..|.. . |+++ +|++
T Consensus 177 G~~vv~v~~~~~~~~d~~~L~~~i~~~t~----~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~ 252 (474)
T 1wyu_B 177 GYQVREIPSGPEGEVDLEALKRELGPHVA----ALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARP 252 (474)
T ss_dssp TCEEEEECBCTTSSBCHHHHHHHCSTTEE----EEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCH
T ss_pred CCEEEEecCCCCCCcCHHHHHHhhCCCce----EEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCc
Confidence 99999999999999999999999975421 222222 34554 2 3331 2221
Q ss_pred --CCccEEEEcCcccCCccc-----ccEEEEEeCCccchhhhccC------CCccccCCCCCccccCCcccccccccchH
Q psy852 580 --EYADSFNVNVNKWLLTAF-----DSSCLWVADRYKLTSALVVD------PLYLQHGHEGAIDYRHWGIPLSRRFRSLK 646 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~-----g~G~llvR~~~~L~~~l~~~------~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~ 646 (891)
.++|.+++|+||++++|+ ++|+++++++ +.+.+... ..|...-. ....++.....+.-.+...+
T Consensus 253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~--l~~~l~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~a 329 (474)
T 1wyu_B 253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH--LAPYLPVPLVERGEEGFYLDFD-RPKSIGRVRSFYGNFLALVR 329 (474)
T ss_dssp HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG--GGGGCCSCEEEECSSCEEEECC-CTTCCCCSSSTTSCHHHHHH
T ss_pred ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHH--HHHhCCCCeeeccCCeeEeccc-CcccCcccccCcCcHHHHHH
Confidence 147999999999999997 6999999875 22222100 01100000 00000000000111233567
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE
Q psy852 647 LWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHM 725 (891)
Q Consensus 647 lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~ 725 (891)
.|..++.+|.+++++..++..+++++|.+.|++. ++++..+. ..+.+.+.+ +. +.....+.++|.++|+...
T Consensus 330 a~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~~L~~~Gi~~~ 402 (474)
T 1wyu_B 330 AWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP-PE-----GFRALDLAKGLLELGFHPP 402 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC-ST-----TCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc-CC-----CCCHHHHHHHHHHCCcccc
Confidence 7888888999999999999999999999999987 78774332 332223333 21 2245678889988898632
Q ss_pred eeccc--cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 726 VPASQ--EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 726 s~s~~--~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+... .....+ +++...+|++|+|++++.|+++..
T Consensus 403 -~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 403 -TVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp -EESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred -ccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 1111 123456 888888899999999999998864
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-13 Score=150.74 Aligned_cols=282 Identities=13% Similarity=0.059 Sum_probs=179.7
Q ss_pred CCCCccccccCCCCCCH-HHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 14 HWQHPRFHAYFPSGNSY-PSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 14 ~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
+...|+++.+.+++... +.++..+.....+ ...+....+..++.+++++++|.+.... .
T Consensus 18 ~~~~~~~~~~~p~p~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~~~~~~~~-------v------- 77 (393)
T 3kgw_A 18 PLSVPTRLLLGPGPSNLAPRVLAAGSLRMIG------HMQKEMLQIMEEIKQGIQYVFQTRNPLT-------L------- 77 (393)
T ss_dssp CCCCCCCEECSSSCCCCCHHHHHHTTCCCCC------TTSHHHHHHHHHHHHHHHHHHTCCCSEE-------E-------
T ss_pred CCCCccceeccCCCCCCCHHHHHHhcccccC------cccHHHHHHHHHHHHHHHHHhCCCCCcE-------E-------
Confidence 34467777777665544 4444333221111 2346667888889999999999874310 0
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHH--HHHHHHcCCeEEEEe
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCV--EKAAMMAFVRLKILE 170 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv--~kaa~~~~~~v~~V~ 170 (891)
.+++||+......+..+ .. ++..|+++..+||+. ...+...|.+++.++
T Consensus 78 --------------~~~~gg~~al~~~~~~~--~~-------------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~ 128 (393)
T 3kgw_A 78 --------------VVSGSGHCAMETALFNL--LE-------------PGDSFLTGTNGIWGMRAAEIADRIGARVHQMI 128 (393)
T ss_dssp --------------EESCCTTTHHHHHHHHH--CC-------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred --------------EEeCCcHHHHHHHHHhc--CC-------------CCCEEEEEeCCchhHHHHHHHHHcCCceEEEe
Confidence 13457764432222222 11 112356666777643 555666788999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc-CCccccCCCCccCC
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA-GSSFICPEFRPFMN 249 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G-G~~~~~~~~~~~~~ 249 (891)
++.++.+|+++|++.+++.. +.+|+++..+|.+|.+.|+++|.++|+++|+++++|++++ |...+
T Consensus 129 ~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~--------- 194 (393)
T 3kgw_A 129 KKPGEHYTLQEVEEGLAQHK-----PVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPI--------- 194 (393)
T ss_dssp CCTTCCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCC---------
T ss_pred CCCCCCCCHHHHHHHHhhCC-----CcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCccc---------
Confidence 99999999999999998732 4578888889999999999999999999999999999884 11000
Q ss_pred CCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccccc
Q psy852 250 GKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDA 329 (891)
Q Consensus 250 g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (891)
T Consensus 195 -------------------------------------------------------------------------------- 194 (393)
T 3kgw_A 195 -------------------------------------------------------------------------------- 194 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcc-c----CccccCCCC
Q psy852 330 IFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-V----DPLYLQHGH 404 (891)
Q Consensus 330 ~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~-~----~~~y~~~~~ 404 (891)
. . +. ..+|.+++++||++++|.+.|++++++.. ...+. . .+-|+....
T Consensus 195 ------------------~--~----~~-~~~d~~~~s~sK~~~~~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 247 (393)
T 3kgw_A 195 ------------------Y--M----DQ-QGIDIMYSSSQKVLNAPPGISLISFNDKA--KYKVYSRKTKPVSFYTDITY 247 (393)
T ss_dssp ------------------C--T----TT-TTCCEEEEESSSTTCCCSSCEEEEECHHH--HHHHHTCSSCCSCSTTCHHH
T ss_pred ------------------c--h----hh-cCCCEEEecCcccccCCCceeEEEECHHH--HHHHhccCCCCCceeecHHH
Confidence 0 0 00 13589999999999999999999997642 11111 1 111110000
Q ss_pred C-Cccc--ccccccCCCCC-hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 405 E-GAID--YRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 405 ~-~~~~--~~~~~~~~sr~-~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
. ..+. .......++-. ....++..+++.+..+++.++.++..++++++.+.|++. +++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 312 (393)
T 3kgw_A 248 LAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFV 312 (393)
T ss_dssp HHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSS
T ss_pred HHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeecc
Confidence 0 0000 00000111222 234566778888888889999999999999999999887 777663
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-13 Score=146.24 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=121.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCC--C-CCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGC--I-GFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~--~-~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
.|+++-..+...+.++..+....-+. + ...+..+........++.+++++++|.+.+..
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v------------------ 64 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEI------------------ 64 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGE------------------
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeE------------------
Confidence 47777777777788777776655432 1 11233344556778889999999999764321
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH---HHcCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---MMAFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa---~~~~~~v~~V~~d 172 (891)
.+++||+..... ++...+... .. +...|+++..+|+++..++ ...|.+++.|+++
T Consensus 65 -----------~~~~g~t~a~~~-~~~~~~~~~-~~---------~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 122 (384)
T 1eg5_A 65 -----------FFTSCATESINW-ILKTVAETF-EK---------RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD 122 (384)
T ss_dssp -----------EEESCHHHHHHH-HHHHHHHHT-TT---------TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC
T ss_pred -----------EEECCHHHHHHH-HHHhhhhhc-cC---------CCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC
Confidence 135677644333 333222100 00 1224788889999987766 4567899999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcC--Cceeeecccc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFD--VWLHVDGAYA 235 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~--~~lHvDaA~G 235 (891)
++|.+|+++|++++++. +.+|+++..+|.+|.+.|+++|.++|+++| +++++|.|++
T Consensus 123 ~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~ 181 (384)
T 1eg5_A 123 SRGVVKLEELEKLVDED------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQT 181 (384)
T ss_dssp TTSCBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTT
T ss_pred CCCccCHHHHHHHhCCC------CeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhh
Confidence 99999999999988653 457778899999999999999999999999 8888888883
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-13 Score=152.05 Aligned_cols=277 Identities=15% Similarity=0.074 Sum_probs=183.5
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCC-CCCCCCCCCCCCCCCCcccccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEK-FLMYPPQGKNATTPNDIDMNIE 97 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~-~~~~~~~~~g~~tp~~~~~~~~ 97 (891)
.|+.+..+....+.++..+.....+ ..++...++..++.+++++++|.+.. ..
T Consensus 35 ~~l~~~~~~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~~~~~la~~~g~~~~~~v-------------------- 88 (393)
T 1vjo_A 35 RLLLGPGPSNAHPSVLQAMNVSPVG------HLDPAFLALMDEIQSLLRYVWQTENPLTI-------------------- 88 (393)
T ss_dssp CEECSSSCCCCCHHHHHHHSSCCCC------TTSHHHHHHHHHHHHHHHHHHTCCCSCEE--------------------
T ss_pred ceeccCCCCCCCHHHHHHHhccccc------ccCHHHHHHHHHHHHHHHHHhCCCCCcEE--------------------
Confidence 4777766666667766555433322 23455778888999999999998643 11
Q ss_pred ccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChH--HHHHHHHcCCeEEEEecCCCC
Q psy852 98 DYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAMMAFVRLKILEPDDKN 175 (891)
Q Consensus 98 ~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~S--v~kaa~~~~~~v~~V~~d~~g 175 (891)
.+++||+......+..+ .. +.-.|+++..+|++ +..++...|.+++.|+++.+|
T Consensus 89 ---------~~t~g~t~al~~~~~~~-~~--------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 144 (393)
T 1vjo_A 89 ---------AVSGTGTAAMEATIANA-VE--------------PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGE 144 (393)
T ss_dssp ---------EESSCHHHHHHHHHHHH-CC--------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTC
T ss_pred ---------EEeCchHHHHHHHHHhc-cC--------------CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCCC
Confidence 13567764433322222 11 11237777788988 777777778899999999999
Q ss_pred cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccc
Q psy852 176 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFD 255 (891)
Q Consensus 176 ~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d 255 (891)
.+|+++|++.+++. .+.+|+++..+|.+|.+.|+++|+++|+++|+++++|.+++ +...
T Consensus 145 ~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~-~g~~--------------- 203 (393)
T 1vjo_A 145 VFSLEELRTALETH-----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTS-LGGV--------------- 203 (393)
T ss_dssp CCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTT-TTTS---------------
T ss_pred CCCHHHHHHHHhhC-----CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCcc-ccCc---------------
Confidence 99999999999863 13478888999999999999999999999999999999984 1000
Q ss_pred cCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEE
Q psy852 256 NLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWL 335 (891)
Q Consensus 256 ~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (891)
T Consensus 204 -------------------------------------------------------------------------------- 203 (393)
T 1vjo_A 204 -------------------------------------------------------------------------------- 203 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhccc-----CccccCCCCCCcccc
Q psy852 336 HVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-----DPLYLQHGHEGAIDY 410 (891)
Q Consensus 336 ~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~-----~~~y~~~~~~~~~~~ 410 (891)
... +.. ..+|.++.++||++++|.++|++++++.. ...+.. .+.|........+ .
T Consensus 204 ------------~~~----~~~-~~~di~~~s~sK~l~~~~~~G~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~ 263 (393)
T 1vjo_A 204 ------------PIF----LDA-WGVDLAYSCSQKGLGCSPGASPFTMSSRA--IEKLQRRRTKVANWYLDMNLLGKY-W 263 (393)
T ss_dssp ------------CCC----TTT-TTCSEEECCSSSTTCSCSSCEEEEECHHH--HHHHHTCSSCCSCSTTCHHHHHHH-H
T ss_pred ------------CCc----ccc-cCccEEEEcCcccccCCCceEEEEECHHH--HHHHhccCCCCCceecCcHhhhhh-h
Confidence 000 000 13589999999999999999999998642 111211 1111100000000 0
Q ss_pred cccccCC-CCC-hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 411 RHWGIPL-SRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 411 ~~~~~~~-sr~-~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
....... +.. ....+++.+++.+..+++.++.++..++++++.+.|++. +++++.+
T Consensus 264 ~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 321 (393)
T 1vjo_A 264 GSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVE 321 (393)
T ss_dssp STTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCC
Confidence 0001111 222 234567778887767788999999999999999999886 7777643
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=168.17 Aligned_cols=168 Identities=26% Similarity=0.333 Sum_probs=123.3
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccc-cccceEEEecccchHHHHHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGV-LLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~-~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
++.+++++.+... .-.++ +++|||++|++++.++|.++.+..+. .|. ..++++|++|..+|+|+.+++.+
T Consensus 152 ~~~~~la~l~g~~-~~~~~--~t~ggtea~~~al~~ar~~~~~~~~~------~G~~~~~~~~vl~s~~~h~s~~~~~~~ 222 (515)
T 2jis_A 152 EVLRKLRALVGWS-SGDGI--FCPGGSISNMYAVNLARYQRYPDCKQ------RGLRTLPPLALFTSKECHYSIQKGAAF 222 (515)
T ss_dssp HHHHHHHHHHTCS-SCEEE--EESSHHHHHHHHHHHHHHHHCTTHHH------HCGGGSCCEEEEEETTSCTHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCCeE--EcCCcHHHHHHHHHHHHHHHhhHHhh------cCccccCCeEEEECCCccHHHHHHHHH
Confidence 3444566666432 22444 78999999999999999865321110 111 12467899999999999999998
Q ss_pred cCc---eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh---------------
Q psy852 526 AFV---RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR--------------- 574 (891)
Q Consensus 526 ~gv---~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~--------------- 574 (891)
.|. +++.||+|++|+||+++|+++|+++.+.|..|.+|+.+.|++. |++
T Consensus 223 ~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~ 302 (515)
T 2jis_A 223 LGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSV 302 (515)
T ss_dssp TTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGG
T ss_pred cCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHH
Confidence 766 8999999999999999999999988777877889998888764 322
Q ss_pred --------hhcCCCCccEEEEcCcccCCcccccEEEEEeCC-ccchhhhccCCCcccc
Q psy852 575 --------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADR-YKLTSALVVDPLYLQH 623 (891)
Q Consensus 575 --------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~-~~L~~~l~~~~~Yl~~ 623 (891)
.++|++.+||+++|+|||+++|++||++++|++ ..+...+...+.|+.+
T Consensus 303 ~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~ 360 (515)
T 2jis_A 303 LLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQ 360 (515)
T ss_dssp GGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC-------
T ss_pred HhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccC
Confidence 144667899999999999999999999999988 5555555556677654
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=152.71 Aligned_cols=171 Identities=7% Similarity=-0.070 Sum_probs=119.7
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcC---CCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAIG---CIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~n---~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
..|+++-.++...+.++..+...+-+ +....|..++.......++.+++++++|.+....
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v----------------- 89 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGV----------------- 89 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGE-----------------
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeE-----------------
Confidence 46888876666677776665554432 1122344445566777888999999999864321
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH----cCCeEEEEe
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM----AFVRLKILE 170 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~----~~~~v~~V~ 170 (891)
.+++||+.........+++... +...|+++..+|.++..++.. .|.+++.|+
T Consensus 90 ------------~~~~g~t~al~~~~~~l~~~~~------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~ 145 (406)
T 3cai_A 90 ------------VLGADRAVLLSLLAEASSSRAG------------LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAE 145 (406)
T ss_dssp ------------EEESCHHHHHHHHHHHTGGGGB------------TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEEC
T ss_pred ------------EEeCChHHHHHHHHHHHhhccC------------CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEe
Confidence 1356776322211112221111 123488888999998776632 577999999
Q ss_pred cC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 171 PD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 171 ~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
++ ++|.+|+++|++.+++. +.+|+++..+|.+|.+.|+++|.++|+++|+++++|+|++
T Consensus 146 ~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 205 (406)
T 3cai_A 146 VDIETGELPTWQWESLISKS------TRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAA 205 (406)
T ss_dssp CCTTTCCCCGGGHHHHCCTT------EEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTT
T ss_pred cCcccCCcCHHHHHHHhCCC------ceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccc
Confidence 98 78999999999988643 4688889999999999999999999999999999999884
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-14 Score=157.87 Aligned_cols=278 Identities=12% Similarity=0.074 Sum_probs=176.3
Q ss_pred HHHHHHHH-HHHHhhccCCccccccCC-CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH
Q psy852 443 RRHCELAK-LFEGKVRRDPRFEISNDV-RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 520 (891)
Q Consensus 443 ~~~lelAr-~l~~~L~~~~~~eVv~~i-tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~ 520 (891)
...++.++ .+++.+...+..+|+ + |+|+|+++..++...- +.. ...+|+++..+|.++.
T Consensus 49 ~~~~~~~r~~la~ll~~~~~~~v~--f~t~~~T~a~n~~~~~~~----~~~-------------~~~~i~~~~~~~~~~~ 109 (361)
T 3m5u_A 49 EEVHFGAQEKAKKLYELNDDYEVL--FLQGGASLQFAMIPMNLA----LNG-------------VCEYANTGVWTKKAIK 109 (361)
T ss_dssp HHHHHHHHHHHHHHHTCCTTEEEE--EESSHHHHHHHHHHHHHC----CSS-------------CEEEEECSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceEE--EEcCcHHHHHHHHHHhcC----CCC-------------eEEEEeCCHHHHHHHH
Confidence 34455555 566666654456788 6 9999999987766431 100 1235788888887665
Q ss_pred HHHHHcCceEEEecCCCCCC--cCHHHHHHHHHhhhhcCCccEEEEec--CCccc---hhh----hhcC----------C
Q psy852 521 KAAMMAFVRLKILEPDDKNS--LRGATLRQVMQQDETMGYIPFFVSTT--LGTTS---CYR----KSQG----------I 579 (891)
Q Consensus 521 Kaa~l~gv~v~~Vp~d~~G~--mD~~~Le~aI~~d~~~g~ip~~Vvat--aGTT~---c~~----~ldG----------i 579 (891)
.+.+ .|++++.||++.+|. ++++. + |+++++ ...++.++ .|+.. |.. ++|+ +
T Consensus 110 ~a~~-~G~~v~~~~~~~~g~~~~~~~~-~--l~~~t~---lv~~~~~e~~tG~~~~~i~~~~~~~~vD~~q~~g~~~id~ 182 (361)
T 3m5u_A 110 EAQI-LGVNVKTVASSEESNFDHIPRV-E--FSDNAD---YAYICSNNTIYGTQYQNYPKTKTPLIVDASSDFFSRKVDF 182 (361)
T ss_dssp HHHH-TTCCEEEEEECTTTTSCSCCCC-C--CCTTSS---EEEEESEETTTTEECSSCCCCSSCEEEECGGGTTSSCCCC
T ss_pred HHHH-cCCceEEEecccCcCCCcCChh-h--cCCCCC---EEEEeCCCCCcceeCCcccccCCEEEEEcccccCCCCCCc
Confidence 5444 478999999998885 56666 3 655432 22233233 36642 211 2333 3
Q ss_pred CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc--cCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHH
Q psy852 580 EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV--VDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGL 656 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~--~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~ 656 (891)
+.+|.+++++|||++ |.|+|++++|++.. . .+. ..+.|+.-..... .. ...++-. ...+.+-.+++.+-.
T Consensus 183 ~~~d~~~~s~~K~~g-p~G~g~l~~~~~~~-~-~~~~~~~p~~~~~~~~~~---~~-~~~~Tp~v~~i~~l~~al~~l~~ 255 (361)
T 3m5u_A 183 SNIALFYGGVQKNAG-ISGLSCIFIRKDML-E-RSKNKQIPSMLNYLTHAE---NQ-SLFNTPPTFAIYMFNLEMDWLLN 255 (361)
T ss_dssp TTEEEEEEETTTTSS-CTTCEEEEEEHHHH-H-HHHTCCCCGGGCHHHHHH---TT-TCSSCCCHHHHHHHHHHHHHHHT
T ss_pred ccCCEEEEechhccC-CCccEEEEEcHHHH-h-hhcCCCCCceeehHHHhh---cC-CCCCCccHHHHHHHHHHHHHHHH
Confidence 458999999999995 99999999997632 1 111 1222221000000 00 0001111 123456677777777
Q ss_pred h-hHHHHHHHHHHHHHHHHHHhccCCCc-EEeCCC--c-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc
Q psy852 657 S-GLQKYIRRHCELAKLFEGKVRRDPRF-EISNDV--R-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE 731 (891)
Q Consensus 657 ~-G~~~~i~~~~~lA~~L~~~L~~~~~~-eil~~~--~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~ 731 (891)
. |++++.++..+++++|.++|++++++ ++..++ . .++++|++++. ......+...|.+.|+....+-...
T Consensus 256 ~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~-----~~~~~~~~~~L~~~gI~~~~g~~~~ 330 (361)
T 3m5u_A 256 QGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKN-----KDLEPLFVKEAEEAGMIGLKGHRIL 330 (361)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSC-----TTHHHHHHHHHHHTTEECCBCCTTT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCc-----hhhhHHHHHHHHHCCCEEecCCCcc
Confidence 7 89999999999999999999999876 665433 2 36999999751 0122467788888998743332222
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..+ +|+++++|++|||+++++|+++.+
T Consensus 331 --g~iRiS~~~~~t~edId~l~~al~~~~~ 358 (361)
T 3m5u_A 331 --GGIRASIYNALNLDQVKTLCEFMKEFQG 358 (361)
T ss_dssp --CSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred --CeEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 236 999999999999999999998763
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-13 Score=149.97 Aligned_cols=250 Identities=14% Similarity=0.061 Sum_probs=163.0
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCC-CCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 52 SPSCTELETIVLDWLGKAIGLPEK-FLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 52 ~p~~~~~E~~~~~~l~~l~g~~~~-~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
+|.......++.+++++++|.+.. .. .+++||+......+..+ . .
T Consensus 47 ~~~~~~~~~~l~~~la~~~g~~~~~~i-----------------------------~~~~g~t~a~~~~~~~~-~-~--- 92 (393)
T 2huf_A 47 HPETLKIMDDIKEGVRYLFQTNNIATF-----------------------------CLSASGHGGMEATLCNL-L-E--- 92 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCCSEEE-----------------------------EESSCHHHHHHHHHHHH-C-C---
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCcEE-----------------------------EEcCcHHHHHHHHHHHH-h-C---
Confidence 566678888999999999998643 11 13467765433322222 1 1
Q ss_pred CCccccccccCCeEEEecCCCChHHH--HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVE--KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC 208 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~--kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~ 208 (891)
+.-.|+++..+|++.. +.+...|.+++.+++++++.+|+++|++.+++.. +.+|+++..+|.+
T Consensus 93 ----------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~npt 157 (393)
T 2huf_A 93 ----------DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHK-----PSVLFLTQGDSST 157 (393)
T ss_dssp ----------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHC-----CSEEEEESEETTT
T ss_pred ----------CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccC-----CcEEEEEccCCCc
Confidence 1123777778888842 2334467799999999999999999999997621 3578888999999
Q ss_pred ccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhh
Q psy852 209 CSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISK 288 (891)
Q Consensus 209 GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 288 (891)
|.+.|+++|+++|+++|+++++|+|++....
T Consensus 158 G~~~~l~~i~~~~~~~~~~li~D~a~~~~~~------------------------------------------------- 188 (393)
T 2huf_A 158 GVLQGLEGVGALCHQHNCLLIVDTVASLGGA------------------------------------------------- 188 (393)
T ss_dssp TEECCCTTHHHHHHHTTCEEEEECTTTBTTB-------------------------------------------------
T ss_pred cccCCHHHHHHHHHHcCCEEEEEcccccCCC-------------------------------------------------
Confidence 9999999999999999999999998721000
Q ss_pred hcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeC
Q psy852 289 LKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNV 368 (891)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~ 368 (891)
... +.. ..+|.++.++
T Consensus 189 -----------------------------------------------------------~~~----~~~-~~~d~~~~s~ 204 (393)
T 2huf_A 189 -----------------------------------------------------------PMF----MDR-WEIDAMYTGS 204 (393)
T ss_dssp -----------------------------------------------------------CCC----TTT-TTCSEEECCS
T ss_pred -----------------------------------------------------------Ccc----hhh-cCccEEEECC
Confidence 000 000 0268999999
Q ss_pred CCcCCccCCceEEEEeccccchhhccc----CccccCCCC-----CCcccccccccCCCCChh-HHHHHHHHHHhcHHHH
Q psy852 369 NKWLLTAFDSSCLWVADRYKLTSALVV----DPLYLQHGH-----EGAIDYRHWGIPLSRRFR-SLKLWFVIRTYGLSGL 438 (891)
Q Consensus 369 HK~~~~p~~~g~~~~r~~~~~~~~~~~----~~~y~~~~~-----~~~~~~~~~~~~~sr~~~-~l~~w~~l~~~g~~G~ 438 (891)
|||+++|.+.|++++++. +...+.. ..+|..+.. .+......+ ..++.... ..++..+++.+...++
T Consensus 205 sK~l~g~~G~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~~~ 281 (393)
T 2huf_A 205 QKVLGAPPGITPVSFSHR--AVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRI-YHHTISSTLLYGLREAIAMACEEGL 281 (393)
T ss_dssp SSTTCCCSSCEEEEECHH--HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCC-CSCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CcccccCCCeEEEEECHH--HHHHHhhcCCCCceEEEchHHHHhhhccccccCC-CCCCCCHHHHHHHHHHHHHHHHhCH
Confidence 999999999999998743 2222211 112211000 000000001 11222332 3455567777766778
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 439 QKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 439 ~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
.++.++..++++++.+.|.+. +++++.+
T Consensus 282 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 309 (393)
T 2huf_A 282 PALIARHEDCAKRLYRGLQDA-GFELYAD 309 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCeeccC
Confidence 999999999999999999887 7776643
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=149.45 Aligned_cols=285 Identities=13% Similarity=0.031 Sum_probs=173.9
Q ss_pred ccccccCCCCCCH-HHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccc
Q psy852 18 PRFHAYFPSGNSY-PSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNI 96 (891)
Q Consensus 18 p~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~ 96 (891)
|+++.+.+++... +.++.. +..... .+ .+|.......++.++++++++...+. +|+.+
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a-~~~~~~----~~-~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~v---- 62 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKA-LDVPSL----GH-TSPEFVSIFQRVLKNTRAVFKSAAAS-----------KSQPF---- 62 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHT-TSCCCC----CT-TSHHHHHHHHHHHHHHHHHTTCCGGG-----------TCEEE----
T ss_pred ccceeecCCCcCchHHHHHH-Hhcccc----cc-CCHHHHHHHHHHHHHHHHHhCCCCCC-----------CCceE----
Confidence 4445555555444 443333 222221 12 36766667777889999999875321 01111
Q ss_pred cccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEe-cCCCChHHHHHHHHcCCeEEEEec-CCC
Q psy852 97 EDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYC-SKEAHSCVEKAAMMAFVRLKILEP-DDK 174 (891)
Q Consensus 97 ~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~-S~~~H~Sv~kaa~~~~~~v~~V~~-d~~ 174 (891)
.+++||+......+..+.+.. .| .+-+++. +...|.++.+++...|.+++.|++ +.+
T Consensus 63 ----------~~~~g~t~al~~~~~~~~~~~---~~--------gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 121 (385)
T 2bkw_A 63 ----------VLAGSGTLGWDIFASNFILSK---AP--------NKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIG 121 (385)
T ss_dssp ----------EEESCTTHHHHHHHHHHSCTT---CS--------CCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTT
T ss_pred ----------EEcCchHHHHHHHHHHHhccC---CC--------CCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCC
Confidence 145677754333333332110 00 1223333 344566665666667789999999 889
Q ss_pred CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc--CCceeeeccccCCccccCCCCccCCCCc
Q psy852 175 NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF--DVWLHVDGAYAGSSFICPEFRPFMNGKT 252 (891)
Q Consensus 175 g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~--~~~lHvDaA~GG~~~~~~~~~~~~~g~~ 252 (891)
|.+|+++|++++++. .+.+|+++..+|.+|.+.|+++|+++|+++ |+++|+|+|++....
T Consensus 122 ~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~------------- 183 (385)
T 2bkw_A 122 ESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE------------- 183 (385)
T ss_dssp SCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-------------
T ss_pred CCCCHHHHHHHHhcC-----CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCc-------------
Confidence 999999999999762 145788899999999999999999999999 888899988832100
Q ss_pred ccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccc
Q psy852 253 SFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFD 332 (891)
Q Consensus 253 ~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (891)
T Consensus 184 -------------------------------------------------------------------------------- 183 (385)
T 2bkw_A 184 -------------------------------------------------------------------------------- 183 (385)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcc-----cCccccCCCCCCc
Q psy852 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-----VDPLYLQHGHEGA 407 (891)
Q Consensus 333 ~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~-----~~~~y~~~~~~~~ 407 (891)
... +... .+|.++.++|||+++|.+.|++++++.. +...+. ....|.... ..
T Consensus 184 ---------------~~~----~~~~-~~d~~~~s~~K~~~~~~G~G~~~~~~~~-~~~~l~~~~~~~~~~~~~~~--~~ 240 (385)
T 2bkw_A 184 ---------------EFE----FDEW-GVDFALTASQKAIGAPAGLSISLCSSRF-MDYALNDSKNGHVHGYFSSL--RR 240 (385)
T ss_dssp ---------------CCC----TTTT-TCSEEEEESSSTTCCCSCEEEEEECHHH-HHHHTCHHHHCCCSCSTTCH--HH
T ss_pred ---------------ccc----cccc-CceEEEecCccccccCCcceEEEEcHHH-HHHHHhhccCCCCCceeecH--HH
Confidence 000 0011 3689999999999999999999987642 110111 001111000 00
Q ss_pred ccc--ccccc-----CCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhh-ccCCcccccc
Q psy852 408 IDY--RHWGI-----PLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKV-RRDPRFEISN 466 (891)
Q Consensus 408 ~~~--~~~~~-----~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L-~~~~~~eVv~ 466 (891)
+.. ..+.. .++-.. ..+++..+++.+...|+.++.++..++++++.+.| ++. +++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~ 307 (385)
T 2bkw_A 241 WTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVS 307 (385)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESS
T ss_pred HhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Cceecc
Confidence 000 00100 112222 33456677777766778999999999999999999 876 777764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-14 Score=159.88 Aligned_cols=271 Identities=12% Similarity=-0.011 Sum_probs=177.9
Q ss_pred cccCCCCCCHHHHHHHHHHHhcCC--CCCc----cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 21 HAYFPSGNSYPSVLADMLSDAIGC--IGFS----WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~~~n~--~~~~----~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
++.-.+.+.++.++..|...+.+. |+.+ ...++.+.++-.++.+.+++++|.++..- +
T Consensus 16 ~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~e--------------v-- 79 (377)
T 3e77_A 16 ENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYK--------------V-- 79 (377)
T ss_dssp CCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEE--------------E--
T ss_pred ccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCe--------------E--
Confidence 444456778889999888876532 2222 33577888999999999999999975310 0
Q ss_pred cccccCCCCCCCCc-ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH---cCCeEEEEe
Q psy852 95 NIEDYMTPANQPQS-LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKILE 170 (891)
Q Consensus 95 ~~~~~~t~~~~~~~-~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~---~~~~v~~V~ 170 (891)
.| ++|||.+.|+.+.++.+.+.+ ..+.....+|++. +++.+ .|..++.++
T Consensus 80 ------------if~t~~~T~a~n~a~~~l~~~~~G-------------d~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~ 133 (377)
T 3e77_A 80 ------------IFLQGGGCGQFSAVPLNLIGLKAG-------------RCADYVVTGAWSA-KAAEEAKKFGTINIVHP 133 (377)
T ss_dssp ------------EEESSHHHHHHHHHHHHHGGGSTT-------------CEEEECCCSHHHH-HHHHHHTTTSEEEECSC
T ss_pred ------------EEEcCchHHHHHHHHHhccCCCCC-------------CeEEEEECCHHHH-HHHHHHHHhCCceEEec
Confidence 24 478888877777776433211 1244555667764 44432 355777788
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCC
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g 250 (891)
+|.++.+++++++..++++ +.+|+++..+|.+|++.|+ +|+++|+++|||++++-
T Consensus 134 ~~~~~~~~~~~~~~~i~~~------t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~-------------- 188 (377)
T 3e77_A 134 KLGSYTKIPDPSTWNLNPD------ASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNF-------------- 188 (377)
T ss_dssp CCSSSCSCCCGGGCCCCTT------CSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTT--------------
T ss_pred cCCCcCCCCChHHhccCCC------ccEEEEeCccCchheEchh-----hhccCCCEEEEEccccc--------------
Confidence 8877788888876655544 3578899999999999999 47788888888888721
Q ss_pred CcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccc
Q psy852 251 KTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAI 330 (891)
Q Consensus 251 ~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (891)
T Consensus 189 -------------------------------------------------------------------------------- 188 (377)
T 3e77_A 189 -------------------------------------------------------------------------------- 188 (377)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccc
Q psy852 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDY 410 (891)
Q Consensus 331 ~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~ 410 (891)
+.. .-++.. .|-+++++|||+ +|.+.|++++|++.. ...-...|.|+..... .
T Consensus 189 -------------g~~-~id~~~-------~~~~~~s~~K~~-gp~G~g~l~~~~~~l-~~~~~~~p~~~~~~~~--~-- 241 (377)
T 3e77_A 189 -------------LSK-PVDVSK-------FGVIFAGAQKNV-GSAGVTVVIVRDDLL-GFALRECPSVLEYKVQ--A-- 241 (377)
T ss_dssp -------------TSS-CCCGGG-------CSEEEEEGGGTT-SCTTCEEEEEETTSC-SCCCTTSCGGGCHHHH--H--
T ss_pred -------------CCC-CCchhh-------cCEEEEeccccc-CCCccEEEEEcHHHH-hhccCCCCchhhHHHH--h--
Confidence 000 000011 245889999999 699999999997632 1111112333210000 0
Q ss_pred cccccCCCCCh-hHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCccccc
Q psy852 411 RHWGIPLSRRF-RSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 411 ~~~~~~~sr~~-~~l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~eVv 465 (891)
......++-+. ..+.+-.+++++-.+ |+.++.++..++++++++.|.+.+++++.
T Consensus 242 ~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~ 298 (377)
T 3e77_A 242 GNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVC 298 (377)
T ss_dssp TTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEEC
T ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceec
Confidence 00011122222 355777889988888 99999999999999999999998887653
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.4e-13 Score=149.94 Aligned_cols=240 Identities=13% Similarity=0.041 Sum_probs=158.9
Q ss_pred ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHH-Hhcc
Q psy852 50 AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLT-RGQK 128 (891)
Q Consensus 50 ~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~a-r~~~ 128 (891)
+.++...+++.++.+++++++|.+... . .++.||+.... .+.++ +..
T Consensus 101 ~~~~g~~~~~~~~~~~la~~~g~~~~~--------i---------------------~~~~g~taa~e--a~~~a~~~~- 148 (438)
T 1wyu_A 101 EVSQGVLQATFEYQTMIAELAGLEIAN--------A---------------------SMYDGATALAE--GVLLALRET- 148 (438)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHTSSEEC--------S---------------------CBSSHHHHHHH--HHHHHHHHH-
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCccc--------e---------------------EEeCcHHHHHH--HHHHHHhcC-
Confidence 468888999999999999999997432 1 12346652211 22222 222
Q ss_pred ccCCccccccccCCeEEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecc
Q psy852 129 KIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG 204 (891)
Q Consensus 129 ~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~G 204 (891)
++..|+++..+|+|...++. ..|.+++.|++ ++|.+|+++ |.+ .+.+|+++..
T Consensus 149 ------------~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~~------~t~~v~i~~p 205 (438)
T 1wyu_A 149 ------------GRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VGE------EVGAVVVQNP 205 (438)
T ss_dssp ------------TCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CCT------TEEEEEEESS
T ss_pred ------------CCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hCC------CeEEEEEECC
Confidence 12248889999999987663 36789999998 678999887 332 2567888887
Q ss_pred cCccccccCHHHHHHHHHHcCCceeeecc---ccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhh
Q psy852 205 TTSCCSFDNLAEIGPVAKEFDVWLHVDGA---YAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSA 281 (891)
Q Consensus 205 tt~~GavDpl~~I~~i~~~~~~~lHvDaA---~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~ 281 (891)
|.+|.++|+++|+++|+++|+++|+|+. +|.+.
T Consensus 206 -n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~------------------------------------------- 241 (438)
T 1wyu_A 206 -NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK------------------------------------------- 241 (438)
T ss_dssp -CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC-------------------------------------------
T ss_pred -CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcC-------------------------------------------
Confidence 9999999999999999999999996643 32100
Q ss_pred HHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcc
Q psy852 282 RAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYA 361 (891)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ 361 (891)
.+ +-..+
T Consensus 242 ------------------------------------------------------------------~~-------~~~g~ 248 (438)
T 1wyu_A 242 ------------------------------------------------------------------PP-------GAYGA 248 (438)
T ss_dssp ------------------------------------------------------------------CH-------HHHTC
T ss_pred ------------------------------------------------------------------CC-------ccCCC
Confidence 00 00136
Q ss_pred cEEEEeCCC-----cCCccCCceEEEEeccccchhhcccCccccCCCC---CC--cccc----------cccccCCC--C
Q psy852 362 DSFNVNVNK-----WLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH---EG--AIDY----------RHWGIPLS--R 419 (891)
Q Consensus 362 ds~~~~~HK-----~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~---~~--~~~~----------~~~~~~~s--r 419 (891)
|.++++.|| |+++| ++|++++++.. ...+ +.++.... .+ .+.+ ...+..+- -
T Consensus 249 D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~--~~~l---~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~ 322 (438)
T 1wyu_A 249 DIAVGDGQSLGLPMGFGGP-HFGFLATKKAF--VRQL---PGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTN 322 (438)
T ss_dssp SEEEEECTTTTCCCGGGCS-CCEEEEECGGG--GGGC---CSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSC
T ss_pred CEEEECCcccCCCccCCCC-CeeEEEEcHHH--HHhC---CCceeccccccCCCcceeeeccccccccchhcccCCccch
Confidence 999999888 77889 89999998642 2211 12211000 00 0000 00011111 0
Q ss_pred -ChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 420 -RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 420 -~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
...++..|+.+..+|.+|+.++.++..++++++.+.|++.++++++.+
T Consensus 323 ~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 371 (438)
T 1wyu_A 323 AQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTP 371 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCC
Confidence 112344455589999999999999999999999999999989998854
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-13 Score=149.45 Aligned_cols=282 Identities=9% Similarity=0.025 Sum_probs=180.4
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAA 523 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa 523 (891)
.++.+.+++.+...+...++ +++|+++++..++.+. . .+.-.|+++...|++ +.+++
T Consensus 47 ~~l~~~la~~~g~~~~~~~~--~~~s~t~al~~~~~~l----~---------------~~gd~Vl~~~~~~~~~~~~~~~ 105 (416)
T 3isl_A 47 NETMEMLRELFQTKNRWAYP--IDGTSRAGIEAVLASV----I---------------EPEDDVLIPIYGRFGYLLTEIA 105 (416)
T ss_dssp HHHHHHHHHHTTCCCSEEEE--EESCHHHHHHHHHHHH----C---------------CTTCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEE--ecCcHHHHHHHHHHHh----c---------------CCCCEEEEecCCcccHHHHHHH
Confidence 34455666666654443332 4667889888877653 1 122357777888887 77778
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC--------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI-------- 579 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi-------- 579 (891)
...|.+++.+|.+.++.+|+++|+++|++.. ...++++ +..|+.. |+++ +|++
T Consensus 106 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~ 182 (416)
T 3isl_A 106 ERYGANVHMLECEWGTVFDPEDIIREIKKVK---PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEV 182 (416)
T ss_dssp HHTTCEEEEEECCTTCCCCHHHHHHHHHHHC---CSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCC
T ss_pred HhcCCeeEEEecCCCCCCCHHHHHHHHhhCC---CcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCc
Confidence 8889999999999999999999999998531 1122222 2356544 4442 3332
Q ss_pred ----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccC----CCcc--------ccCCCC---Cccc-------cC
Q psy852 580 ----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD----PLYL--------QHGHEG---AIDY-------RH 633 (891)
Q Consensus 580 ----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~----~~Yl--------~~~~e~---~~~~-------~~ 633 (891)
..+|.+++++|||+++|.|+|+++++++. .+.+... ..|. ..+... ..+. ..
T Consensus 183 ~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~--~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~ 260 (416)
T 3isl_A 183 KVDEWKIDAAIGGTQKCLSVPSGMAPITYNERV--ADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSE 260 (416)
T ss_dssp CTTTTTCSEEECCSSSTTCCCSSEEEEEECHHH--HHHHHTC------------------CCCCSCSTTCHHHHHHHTST
T ss_pred chhhcCCCEEEecCccccCCCCCeEEEEECHHH--HHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcc
Confidence 14799999999999999999999987652 1112100 0110 000000 0000 00
Q ss_pred Ccc-ccccc-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhh
Q psy852 634 WGI-PLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQ 708 (891)
Q Consensus 634 ~ti-~~SRr-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ 708 (891)
... .++.. ...+.++.+++.+...|+++..++..++++++.+.|++. ++++..++. .++++|+++.. .
T Consensus 261 ~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------~ 333 (416)
T 3isl_A 261 RRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGG------I 333 (416)
T ss_dssp TCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTT------C
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCC------C
Confidence 011 11111 223466777887788889999999999999999999985 888876543 46889998521 2
Q ss_pred hHHHHHHHHHhC-CcEEEeeccccCCeEE-EEecCCCCHHH-HHHHHHHHHHHHH
Q psy852 709 NNRKLLEDINAS-GRLHMVPASQEQNDEV-FELQERKRKDD-LAYKRSFFVRMLG 760 (891)
Q Consensus 709 ln~~L~~~L~~~-G~~~~s~s~~~g~~~l-~sv~~~tT~ed-Id~li~~L~ei~~ 760 (891)
...++.+.|.++ |+.+..+........+ ++++.+++.+| |+++++.|+++..
T Consensus 334 ~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~ 388 (416)
T 3isl_A 334 DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLL 388 (416)
T ss_dssp CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHH
Confidence 356788888776 8875444333344567 99866555555 9999999998874
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-13 Score=152.70 Aligned_cols=235 Identities=11% Similarity=0.091 Sum_probs=159.5
Q ss_pred eEEEecccchHHHHHHHHHcCceEEEecC---CCCCCcCHHHHHHHHHhhhhcCCccEEEEecCC-----ccc-------
Q psy852 507 LMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG-----TTS------- 571 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~---d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataG-----TT~------- 571 (891)
..|+++..+|.|+.||+.+.|.+.+.|+. ++...||+++|+++|++... ..+.+|..|.. +..
T Consensus 163 d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga--~~i~~V~~Ttt~y~p~~~ddI~eIae 240 (501)
T 3hl2_A 163 KYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGP--DCILCIHSTTSCFAPRVPDRLEELAV 240 (501)
T ss_dssp CEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCG--GGEEEEEEECSCCTTBCCCCHHHHHH
T ss_pred CEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCC--CcEEEEEecCCCCCCcccccHHHHHH
Confidence 35777999999999999999999888876 55689999999999998621 12334433322 212
Q ss_pred -hhh-----hhcC------------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCC
Q psy852 572 -CYR-----KSQG------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG 627 (891)
Q Consensus 572 -c~~-----~ldG------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~ 627 (891)
|++ ++|. +.+||.++.|+||++++|+|++++++++++.+.... ..|.
T Consensus 241 Ich~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~---~~yP------ 311 (501)
T 3hl2_A 241 ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEIS---KMYP------ 311 (501)
T ss_dssp HHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHH---HTSC------
T ss_pred HHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHH---HhCC------
Confidence 443 1221 135999999999999999999999999987665431 1221
Q ss_pred CccccCCcccccc-cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC---cEEeCCC-ceeEEEEEecCCc
Q psy852 628 AIDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPR---FEISNDV-RLGLVCFRLRSEN 702 (891)
Q Consensus 628 ~~~~~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~---~eil~~~-~~~iV~Fr~~~~~ 702 (891)
+.+ .+.++.+|++++.+|.+||++.++++.+++++|.++|+++.. -+++..+ ..--+++......
T Consensus 312 ----------Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~ 381 (501)
T 3hl2_A 312 ----------GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLD 381 (501)
T ss_dssp ----------SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSC
T ss_pred ----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccc
Confidence 222 477899999999999999999999999999999999988532 4555443 2334445554331
Q ss_pred chhhhhhHHHHHHHHHhC---CcEEEeecc--------------ccCC---eEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 703 NLIADQNNRKLLEDINAS---GRLHMVPAS--------------QEQN---DEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 703 ~~~~d~ln~~L~~~L~~~---G~~~~s~s~--------------~~g~---~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
.+ .+.....+...|-.+ |--++.+.. ..+. .++ +...-.++++|||.+++.|++....
T Consensus 382 ~~-~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 382 EH-RDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp TT-TSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cc-ccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 11 122233556666554 433332211 1111 134 4455579999999999999999854
Q ss_pred HH
Q psy852 762 VC 763 (891)
Q Consensus 762 ~~ 763 (891)
+.
T Consensus 461 ~~ 462 (501)
T 3hl2_A 461 VR 462 (501)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-12 Score=137.84 Aligned_cols=269 Identities=12% Similarity=0.101 Sum_probs=177.4
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH-
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM- 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l- 525 (891)
++.+.+++.+...+. +++ +++|+++++..++.+.+..+.+ +.-.|+++..+|++...++.+
T Consensus 47 ~l~~~la~~~g~~~~-~v~--~~~g~t~a~~~~~~~l~~~~~~---------------~gd~Vl~~~~~~~~~~~~~~~~ 108 (382)
T 4eb5_A 47 EAREKVAKLVNGGGG-TVV--FTSGATEANNLAIIGYAMRNAR---------------KGKHILVSAVEHMSVINPAKFL 108 (382)
T ss_dssp HHHHHHHHHHTCTTE-EEE--EESSHHHHHHHHHHHHHHHHGG---------------GCCEEEEETTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-eEE--EcCchHHHHHHHHHHHHhhccC---------------CCCEEEECCCcchHHHHHHHHH
Confidence 344455555554333 455 6789999999998887643211 123588899999999888764
Q ss_pred --cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec-----CCccc--------hhh----hhcCC-------
Q psy852 526 --AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT-----LGTTS--------CYR----KSQGI------- 579 (891)
Q Consensus 526 --~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat-----aGTT~--------c~~----~ldGi------- 579 (891)
.|.+++.+|.|+++.+|+++|+++|+++ +-+|+.+ .|... |++ .+|++
T Consensus 109 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~i~D~a~~~g~~~ 182 (382)
T 4eb5_A 109 QKQGFEVEYIPVGKYGEVDVSFIDQKLRDD------TILVSVQHANNEIGTIQPVEEISEVLAGKAALHIDATASVGQIE 182 (382)
T ss_dssp TTTTCEEEEECBCTTSCBCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEEEEECTTTBTTBC
T ss_pred HhCCcEEEEeccCCCCccCHHHHHHHhcCC------CeEEEEeccCCCccccCCHHHHHHHHHHCCCEEEEcchhcCCcc
Confidence 5889999999999999999999999753 2223222 24433 433 23321
Q ss_pred -C----CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHH
Q psy852 580 -E----YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRT 653 (891)
Q Consensus 580 -~----~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~ 653 (891)
. .+|.++.++||+ ++|.|+|+++++++..+.+. +..... . ..+. .++-. .....++.+++.
T Consensus 183 ~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~~~-------~~~~~~-~---~~~~-~~~~~~~~~~~~~~al~~ 249 (382)
T 4eb5_A 183 VDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQPV-------ILGGGQ-E---NGLR-SGSENVPSIVGFGKAAEI 249 (382)
T ss_dssp CCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTCCCCCS-------SCSSCT-G---GGTS-CSCCCHHHHHHHHHHHHH
T ss_pred cCccccCCCEEEeehHHh-cCCCceEEEEEccccccCce-------ecCCCc-c---cccc-CCCccHHHHHHHHHHHHH
Confidence 1 379999999998 55888999999876322211 110000 0 0000 01111 112334445554
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
+ .+++.+..++..++++++.+.|++++++++..++. .++++|++.+. ....+.+.|.+.|+.+..+..+
T Consensus 250 ~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g~~~ 321 (382)
T 4eb5_A 250 T-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------EGESIVLSLDMAGIQASTGSAC 321 (382)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS-------CHHHHHHHHHHHTCBCBCCCGG
T ss_pred H-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc-------CHHHHHHHHHHCCEEEeccccc
Confidence 3 34788899999999999999999988998876542 56888988632 3457888888889875443321
Q ss_pred -------------------cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 -------------------EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 -------------------~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+...+ ++++..+|++|++++++.|+++..
T Consensus 322 ~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (382)
T 4eb5_A 322 SSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE 371 (382)
T ss_dssp GTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 123567 999989999999999999998874
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-12 Score=140.23 Aligned_cols=280 Identities=10% Similarity=0.024 Sum_probs=178.1
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchH--HHHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHS--CVEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~--Sv~Kaa~ 524 (891)
++.+.+++.+...+.-+++ +++|+++++..++.+... +.-.|+++...|+ ....++.
T Consensus 60 ~l~~~la~~~~~~~~~~v~--~~~gg~~al~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~ 118 (393)
T 3kgw_A 60 EIKQGIQYVFQTRNPLTLV--VSGSGHCAMETALFNLLE-------------------PGDSFLTGTNGIWGMRAAEIAD 118 (393)
T ss_dssp HHHHHHHHHHTCCCSEEEE--ESCCTTTHHHHHHHHHCC-------------------TTCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEE--EeCCcHHHHHHHHHhcCC-------------------CCCEEEEEeCCchhHHHHHHHH
Confidence 4445556666544433455 678999999888765411 1123556666776 3466677
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC---------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI--------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi--------- 579 (891)
..|.+++.+|.+.++.+|+++|+++|++.. ...++++ +..|+.. |+++ +|++
T Consensus 119 ~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~ 195 (393)
T 3kgw_A 119 RIGARVHQMIKKPGEHYTLQEVEEGLAQHK---PVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIY 195 (393)
T ss_dssp HTTCEEEEEECCTTCCCCHHHHHHHHHHHC---CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCC
T ss_pred HcCCceEEEeCCCCCCCCHHHHHHHHhhCC---CcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccc
Confidence 789999999999999999999999998731 1122333 2345543 5442 2321
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCC----CccccCC----CCCccccCCccccccc-ccchH
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDP----LYLQHGH----EGAIDYRHWGIPLSRR-FRSLK 646 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~----~Yl~~~~----e~~~~~~~~ti~~SRr-~~aL~ 646 (891)
..+|.+++++|||+++|.|+|+++++++. + +.+. ... .|+.... ........+. .++-. .....
T Consensus 196 ~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a 272 (393)
T 3kgw_A 196 MDQQGIDIMYSSSQKVLNAPPGISLISFNDKA-K-YKVYSRKTKPVSFYTDITYLAKLWGCEGETRVI-HHTTPVTSLYC 272 (393)
T ss_dssp TTTTTCCEEEEESSSTTCCCSSCEEEEECHHH-H-HHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCC-CCCCCHHHHHH
T ss_pred hhhcCCCEEEecCcccccCCCceeEEEECHHH-H-HHHhccCCCCCceeecHHHHHHhhhhccccCCC-CCCCCHHHHHH
Confidence 23799999999999999999999987652 2 2221 111 1110000 0000000000 01111 22345
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc----eeEEEEEecCCcchhhhhhHHHHHHHHHhC-C
Q psy852 647 LWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR----LGLVCFRLRSENNLIADQNNRKLLEDINAS-G 721 (891)
Q Consensus 647 lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G 721 (891)
++.+++.+...++++..++..++++++.+.|++. ++++..+.. ..+++|++... ....++.+.|.++ |
T Consensus 273 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~g 345 (393)
T 3kgw_A 273 LRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVPAG------YNWRDIVSYVLDHFS 345 (393)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECCTT------BCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCCCC------CCHHHHHHHHHHhCC
Confidence 5667777777889999999999999999999998 787764322 35677887421 2356788888887 9
Q ss_pred cEEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 722 ~~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
+.+..+........+ +++ +..+|++|++++++.|++++.
T Consensus 346 i~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~ 386 (393)
T 3kgw_A 346 IEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQ 386 (393)
T ss_dssp EECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 875554444445567 998 556799999999999998873
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-12 Score=142.78 Aligned_cols=283 Identities=12% Similarity=0.084 Sum_probs=177.8
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcC---CCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIG---CIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n---~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
.|+++-..+...+.++..+...+-+ .+..++...+.......++.+.+++++|.+.+..
T Consensus 18 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v------------------ 79 (390)
T 1elu_A 18 TYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTI------------------ 79 (390)
T ss_dssp EECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGE------------------
T ss_pred EEecCCccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHE------------------
Confidence 4666655555556665555444322 1112222234444666778889999998764321
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH----HHHcCCeEEEEec
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEP 171 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~ 171 (891)
.+++||+.. +..++...+.. +...|+++..+|.+...+ +...|.+++.++.
T Consensus 80 -----------~~~~g~t~a-~~~~~~~~~~~-------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 134 (390)
T 1elu_A 80 -----------TITDNVTTG-CDIVLWGLDWH-------------QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPV 134 (390)
T ss_dssp -----------EEESSHHHH-HHHHHHHSCCC-------------TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECC
T ss_pred -----------EEeCChHHH-HHHHHhCCCCC-------------CCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcC
Confidence 134677643 22222222111 123478888899997654 3445779999998
Q ss_pred C--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH----HcCCceeeeccccCCccccCCCC
Q psy852 172 D--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK----EFDVWLHVDGAYAGSSFICPEFR 245 (891)
Q Consensus 172 d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~----~~~~~lHvDaA~GG~~~~~~~~~ 245 (891)
+ +++.+|+++|++.+++. +.+|+++..+|.+|.+.|+++|.++|+ ++|+++++|.|++-.
T Consensus 135 ~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g-------- 200 (390)
T 1elu_A 135 AATLNQGDAAAVLANHLGPK------TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAG-------- 200 (390)
T ss_dssp GGGSSSSCHHHHHHTTCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBT--------
T ss_pred CCCCCccchHHHHHHhcCCC------ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccC--------
Confidence 7 68899999999988643 457888999999999999999999999 899888888888310
Q ss_pred ccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccc
Q psy852 246 PFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQS 325 (891)
Q Consensus 246 ~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (891)
T Consensus 201 -------------------------------------------------------------------------------- 200 (390)
T 1elu_A 201 -------------------------------------------------------------------------------- 200 (390)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCC-
Q psy852 326 YRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH- 404 (891)
Q Consensus 326 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~- 404 (891)
.. ...+ .. ..+|.++.++|||+++|+++|++++++.. ...+. +.......
T Consensus 201 -------------------~~-~~~~----~~-~~~d~~~~s~~K~~~~~~g~G~~~~~~~~--~~~~~--~~~~g~~~~ 251 (390)
T 1elu_A 201 -------------------SL-PLDF----SR-LEVDYYAFTGHKWFAGPAGVGGLYIHGDC--LGEIN--PTYVGWRSI 251 (390)
T ss_dssp -------------------TB-CCCT----TT-SCCSEEEEESSSTTCCCTTCEEEEECTTT--GGGCC--CCSCCTTTE
T ss_pred -------------------Cc-CCCh----hh-cCCCEEEccccccccCCCceEEEEECHHh--HhhcC--CccccCCcc
Confidence 00 0000 00 13589999999999999999999998642 11121 11100000
Q ss_pred -----CCcccccc--ccc-CCCCCh-hHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 405 -----EGAIDYRH--WGI-PLSRRF-RSLKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 405 -----~~~~~~~~--~~~-~~sr~~-~~l~~w~~l~~~g~~G-~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
...+++.+ ..+ .++... ...+++.+++.+...+ +.++.++..++++++.+.|.+.++++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 324 (390)
T 1elu_A 252 TYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLAT 324 (390)
T ss_dssp EECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCS
T ss_pred cccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecC
Confidence 00000000 011 122222 2345667787776666 889999999999999999998888888754
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-12 Score=141.92 Aligned_cols=281 Identities=13% Similarity=0.060 Sum_probs=176.0
Q ss_pred CCCCccccccCCCCCCH-HHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCC-CCCCCCCCCCCCCCCC
Q psy852 14 HWQHPRFHAYFPSGNSY-PSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEK-FLMYPPQGKNATTPND 91 (891)
Q Consensus 14 ~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~-~~~~~~~~~g~~tp~~ 91 (891)
+-..|+++.+.+++... +.++. .+...... . .+|.......++.+.+++++|.+.. ..
T Consensus 13 ~~~~~~~~~~~~~p~~~~~~v~~-a~~~~~~~---~--~~~~~~~~~~~l~~~la~~~~~~~~~~v-------------- 72 (396)
T 2ch1_A 13 PLIIPEKIMMGPGPSNCSKRVLT-AMTNTVLS---N--FHAELFRTMDEVKDGLRYIFQTENRATM-------------- 72 (396)
T ss_dssp CCCCCCCBCCSSSSCCCCHHHHH-HTTSCCCC---T--TCHHHHHHHHHHHHHHHHHHTCCCSCEE--------------
T ss_pred CCCCCcceeecCCCCCCCHHHHH-Hhcccccc---C--CChhHHHHHHHHHHHHHHHhCCCCCcEE--------------
Confidence 34455655555544433 44443 33322211 1 2566667778889999999998653 11
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHH--HHHHHcCCeEEEE
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVE--KAAMMAFVRLKIL 169 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~--kaa~~~~~~v~~V 169 (891)
.+++||+.........+ . . +...|+++..+|++.. +.+...|.+++.|
T Consensus 73 ---------------~~~~g~t~al~~~~~~~-~-~-------------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 73 ---------------CVSGSAHAGMEAMLSNL-L-E-------------EGDRVLIAVNGIWAERAVEMSERYGADVRTI 122 (396)
T ss_dssp ---------------EESSCHHHHHHHHHHHH-C-C-------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred ---------------EECCcHHHHHHHHHHHh-c-C-------------CCCeEEEEcCCcccHHHHHHHHHcCCceEEe
Confidence 13467764432222222 1 1 1123777778888874 3556678899999
Q ss_pred ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCC
Q psy852 170 EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMN 249 (891)
Q Consensus 170 ~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~ 249 (891)
+++.++.+|+++|++.+++.. +.+|+++..+|.+|.+.|+++|.++|+++|+++++|.|++- ...
T Consensus 123 ~~~~~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~-g~~--------- 187 (396)
T 2ch1_A 123 EGPPDRPFSLETLARAIELHQ-----PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASL-CGV--------- 187 (396)
T ss_dssp ECCTTSCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTB-TTB---------
T ss_pred cCCCCCCCCHHHHHHHHHhCC-----CCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccc-cCC---------
Confidence 999999999999999998631 34778889999999999999999999999999999998831 000
Q ss_pred CCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccccc
Q psy852 250 GKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDA 329 (891)
Q Consensus 250 g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (891)
T Consensus 188 -------------------------------------------------------------------------------- 187 (396)
T 2ch1_A 188 -------------------------------------------------------------------------------- 187 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccC----ccccCCCC-
Q psy852 330 IFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD----PLYLQHGH- 404 (891)
Q Consensus 330 ~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~----~~y~~~~~- 404 (891)
... +... .+|.++.++||++++|.++|++++++. .+ ..+... ..+..+..
T Consensus 188 ------------------~~~----~~~~-~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 242 (396)
T 2ch1_A 188 ------------------PFY----MDKW-EIDAVYTGAQKVLGAPPGITPISISPK-AL-DVIRNRRTKSKVFYWDLLL 242 (396)
T ss_dssp ------------------CCC----TTTT-TCCEEECCCC-CCCCCSSCEEEEECHH-HH-HHHHTCSSCCSCGGGCHHH
T ss_pred ------------------ccc----hhhc-CcCEEEEcCCccccCCCCeEEEEECHH-HH-HhhhhccCcccceEechHH
Confidence 000 0000 258888999999999999999988763 12 222111 11111000
Q ss_pred ----CCcccccccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 405 ----EGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 405 ----~~~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
........+ ..++-+. ...++..+++.+..+++.++.++..++++++.+.|.+. +++++.
T Consensus 243 ~~~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 307 (396)
T 2ch1_A 243 LGNYWGCYDEPKR-YHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFV 307 (396)
T ss_dssp HHHHTTCSSSCCC-CCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSS
T ss_pred HHHhhhhhcccCC-CCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeecc
Confidence 000000011 1122232 33556677887777889999999999999999999876 777664
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=142.99 Aligned_cols=171 Identities=16% Similarity=0.080 Sum_probs=113.6
Q ss_pred ccccc-CCCCCCHHHHHHHHHHHhcCCCC--C--ccccChhHHHHHHHHHHH-HHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 19 RFHAY-FPSGNSYPSVLADMLSDAIGCIG--F--SWAASPSCTELETIVLDW-LGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 19 ~~~~~-~~~~~~~~~~~~~~l~~~~n~~~--~--~~~~~p~~~~~E~~~~~~-l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
.|+++ .+.+...+.++..+....-+..+ . .+..+........++.++ +++++|.+ . .
T Consensus 10 i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~-v--------------- 72 (371)
T 2e7j_A 10 INIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-V-A--------------- 72 (371)
T ss_dssp EECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-E-E---------------
T ss_pred EEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-E-E---------------
Confidence 36666 33455566666655544332210 0 122233334556667788 99999876 2 1
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEe--
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE-- 170 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~-- 170 (891)
.+++||+......+..+ . . ++..|+++..+|++...++...|.+++.++
T Consensus 73 --------------~~~~g~t~a~~~~~~~~-~-~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 123 (371)
T 2e7j_A 73 --------------RVTNGAREAKFAVMHSL-A-K-------------KDAWVVMDENCHYSSYVAAERAGLNIALVPKT 123 (371)
T ss_dssp --------------EEESSHHHHHHHHHHHH-C-C-------------TTCEEEEETTCCHHHHHHHHHTTCEEEEECCC
T ss_pred --------------EEeCChHHHHHHHHHHH-h-C-------------CCCEEEEccCcchHHHHHHHHcCCeEEEeecc
Confidence 13467664332222222 1 1 123488889999999999888888999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccC
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG 236 (891)
.|+++.+|+++|++.+++...+ ..+.+|+++..+|.+|.+.|+++|.++|+++|+++++|+|+++
T Consensus 124 ~~~~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~ 188 (371)
T 2e7j_A 124 DYPDYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAI 188 (371)
T ss_dssp CTTTCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTB
T ss_pred cCCCCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECcccc
Confidence 8888999999999999854321 2356899999999999999999999999999999999999854
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-12 Score=139.65 Aligned_cols=277 Identities=10% Similarity=0.023 Sum_probs=177.2
Q ss_pred HHHHHHHHhhccC-CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH--HHHH
Q psy852 447 ELAKLFEGKVRRD-PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV--EKAA 523 (891)
Q Consensus 447 elAr~l~~~L~~~-~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv--~Kaa 523 (891)
++.+.+++.+... +.-+++ +++|+++++..++.+... -.|+++..+|++. .+++
T Consensus 37 ~l~~~la~~~g~~~~~~~v~--~t~g~t~a~~~~~~~~~~---------------------d~vl~~~~~~~~~~~~~~~ 93 (353)
T 2yrr_A 37 AIQERLAALFDPGEGALVAA--LAGSGSLGMEAGLANLDR---------------------GPVLVLVNGAFSQRVAEMA 93 (353)
T ss_dssp HHHHHHHHHHCCCTTCEEEE--ESSCHHHHHHHHHHTCSC---------------------CCEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCceEE--EcCCcHHHHHHHHHHhcC---------------------CcEEEEcCCCchHHHHHHH
Confidence 4444556666542 122466 778999999888765421 1267777788874 4555
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC--------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI-------- 579 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi-------- 579 (891)
...|.+++.+|.++++.+|+++|+++|++. ....++++ +..|... |+++ +|++
T Consensus 94 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~ 170 (353)
T 2yrr_A 94 ALHGLDPEVLDFPPGEPVDPEAVARALKRR---RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPF 170 (353)
T ss_dssp HHTTCCEEEEECCTTSCCCHHHHHHHHHHS---CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCC
T ss_pred HHcCCceEEEeCCCCCCCCHHHHHHHHHhC---CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccc
Confidence 677899999999999999999999999862 11122222 2235443 4431 2221
Q ss_pred ----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCC-CccccCCCCCccccCCccccccc-ccchHHHHHHHH
Q psy852 580 ----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP-LYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRT 653 (891)
Q Consensus 580 ----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~-~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~ 653 (891)
-.+|.+++++|||+++|.|+|+++++++. + +.+...+ .|+........ .......++.. .....++.+++.
T Consensus 171 ~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~-~-~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~al~~ 247 (353)
T 2yrr_A 171 SMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEA-R-KAFTGKRGWYLDLARVAEH-WERGGYHHTTPVLLHYALLEALDL 247 (353)
T ss_dssp CHHHHTCSEEECCTTSTTCCCSSCEEEEECHHH-H-HHCCCCSCSTTCHHHHHHH-HTTCCCSSCCCHHHHHHHHHHHHH
T ss_pred cccccCceEEEecCcccccCCCceEEEEECHHH-H-HHhccCCCccccHHHHhhh-hhcCCCCCCCCHHHHHHHHHHHHH
Confidence 13699999999999999999999997652 2 2221101 11100000000 00000111111 222345667777
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE 731 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~ 731 (891)
+...|+++..++..++++++.+.|++. ++++..++ ...+++|+++.. ...+++.+.|.++|+.+..+....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~g~~~~ 320 (353)
T 2yrr_A 248 VLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEG------VDADRLVRALYAEGVAVAGGIGPT 320 (353)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTT------CCHHHHHHHHHHTTEECEECCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCC------CCHHHHHHHHHHCCEEEeCCcccc
Confidence 777789999999999999999999987 88887643 345778988421 135678889988998765554443
Q ss_pred CCeEE-EEecCCCCHHHHH-HHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLA-YKRSFFVRML 759 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId-~li~~L~ei~ 759 (891)
....+ ++++..++++|++ ++++.|+++.
T Consensus 321 ~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l 350 (353)
T 2yrr_A 321 RGQVLRLGLMGEGARREAYQAFLKALDRAL 350 (353)
T ss_dssp TTTCEEEECSGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 44556 9987777889998 9999998775
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.5e-13 Score=146.93 Aligned_cols=251 Identities=9% Similarity=-0.031 Sum_probs=162.7
Q ss_pred cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcc
Q psy852 49 WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQK 128 (891)
Q Consensus 49 ~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~ 128 (891)
+..++.+.++-.++.+.+++++|.+... .+++|||...++. +.+.+ .
T Consensus 27 ~h~~~~~~~~~~~~~~~l~~~~~~~~~v------------------------------~~~~sgt~a~~~~-~~~~~--~ 73 (379)
T 3ke3_A 27 NHMSKAFQEVMNDLLSNLKTVYNAEAAV------------------------------IIPGSGTYGMEAV-ARQLT--I 73 (379)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTCSEEE------------------------------EEESCHHHHHHHH-HHHHC--T
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCEE------------------------------EEcCChhHHHHHH-HHhCC--C
Confidence 3458888899999999999999986221 1457887654443 22211 1
Q ss_pred ccCCccccccccCCeEEEecCCCChHHH--HHHHH-c-CCeEEEEecCCC---------CcccHHHHHHHHHhhhhcCCc
Q psy852 129 KIHPFVDEGVLLSKLMAYCSKEAHSCVE--KAAMM-A-FVRLKILEPDDK---------NSLRGATLRQVMQQDETMGYI 195 (891)
Q Consensus 129 ~~~~~~~~g~~~~~~~v~~S~~~H~Sv~--kaa~~-~-~~~v~~V~~d~~---------g~id~~~L~~~l~~~~~~g~~ 195 (891)
+-.|+++..+|++.. ..+.. + +.+++.++++.. +.+|+++|++.+++..
T Consensus 74 -------------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~----- 135 (379)
T 3ke3_A 74 -------------DEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDK----- 135 (379)
T ss_dssp -------------TCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHT-----
T ss_pred -------------CCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcC-----
Confidence 112566667777643 22332 3 347888887543 3699999999996532
Q ss_pred ceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcch
Q psy852 196 PFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASE 272 (891)
Q Consensus 196 p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~ 272 (891)
+.+|+++..+|.+|.+.| +++|+++|+++|+++|+|++++|...+.
T Consensus 136 ~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~g~~~~~------------------------------- 184 (379)
T 3ke3_A 136 SAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGCVWLD------------------------------- 184 (379)
T ss_dssp CSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTCTTCCCC-------------------------------
T ss_pred CcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc-------------------------------
Confidence 347888999999999999 9999999999999999999885311110
Q ss_pred hHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCcccc
Q psy852 273 CIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFR 352 (891)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 352 (891)
..
T Consensus 185 ------------------------------------------------------------------------------~~ 186 (379)
T 3ke3_A 185 ------------------------------------------------------------------------------MK 186 (379)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred ccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcc--cCccccCCCCC-----CcccccccccCCCCCh-hHH
Q psy852 353 PFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV--VDPLYLQHGHE-----GAIDYRHWGIPLSRRF-RSL 424 (891)
Q Consensus 353 ~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~--~~~~y~~~~~~-----~~~~~~~~~~~~sr~~-~~l 424 (891)
. ..+|.+++++|||+++|.+.|++++++... ..+. ....|...... +.+..+.....++-+. ...
T Consensus 187 ~-----~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~ 259 (379)
T 3ke3_A 187 E-----LGIDVLISAPQKGWSSTPCAGLVMLSAAAI--KKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLR 259 (379)
T ss_dssp H-----HTCSEEEECTTTTTCSCCCEEEEEECHHHH--HHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHH
T ss_pred c-----cCCCEEEecchhhcCCCCceEEEEECHHHH--HhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHH
Confidence 0 036999999999999999999999986521 1111 11122110000 0000000001112222 233
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 425 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 425 ~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
++-.+++.+..+|+.++.++..++++++.+.|.+. +++++.+
T Consensus 260 a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~ 301 (379)
T 3ke3_A 260 QFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAA 301 (379)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBC
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCC
Confidence 55577788888899999999999999999999886 6777654
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-12 Score=141.85 Aligned_cols=251 Identities=12% Similarity=0.016 Sum_probs=159.3
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.+|...++..++.+++++++|.+.... .+| +++||+...+..+..+ . ..
T Consensus 46 ~~~~~~~~~~~~~~~la~~~g~~~~~~-------~i~--------------------~~~ggt~al~~~~~~~-~-~~-- 94 (376)
T 3f0h_A 46 RTTEFSSTMLENEKFMLEYAKAPEGSK-------AVF--------------------MTCSSTGSMEAVVMNC-F-TK-- 94 (376)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCTTCE-------EEE--------------------ESSCHHHHHHHHHHHH-C-CT--
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCce-------EEE--------------------EcCChhHHHHHHHHhc-c-CC--
Confidence 356777888899999999999975310 011 2467765433332222 1 11
Q ss_pred CCccccccccCCeEEEecCCCChHHH--HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVE--KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC 208 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~--kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~ 208 (891)
.+- |+++...+++.. ..+...+.+++.++++.++.+|+++|++.++++ +.+|+++..+|.+
T Consensus 95 ----------gd~-vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~------~~~v~~~~~~npt 157 (376)
T 3f0h_A 95 ----------KDK-VLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQN------FTGLLVNVDETST 157 (376)
T ss_dssp ----------TCC-EEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSC------CCEEEEESEETTT
T ss_pred ----------CCe-EEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccC------ceEEEEecccCCc
Confidence 112 444444444432 234456789999999999999999999866433 4578888899999
Q ss_pred ccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhh
Q psy852 209 CSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISK 288 (891)
Q Consensus 209 GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 288 (891)
|.+.|+++|+++|+++|+++++|+++++....
T Consensus 158 G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~------------------------------------------------ 189 (376)
T 3f0h_A 158 AVLYDTMMIGEFCKKNNMFFVCDCVSAFLADP------------------------------------------------ 189 (376)
T ss_dssp TEECCHHHHHHHHHHTTCEEEEECTTTTTTSC------------------------------------------------
T ss_pred ceecCHHHHHHHHHHcCCEEEEEcCccccCcc------------------------------------------------
Confidence 99999999999999999999999888432110
Q ss_pred hcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeC
Q psy852 289 LKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNV 368 (891)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~ 368 (891)
..+.. ..+|.++.++
T Consensus 190 ------------------------------------------------------------~~~~~-----~~~d~~~~s~ 204 (376)
T 3f0h_A 190 ------------------------------------------------------------FNMNE-----CGADVMITGS 204 (376)
T ss_dssp ------------------------------------------------------------CCHHH-----HTCSEEEEET
T ss_pred ------------------------------------------------------------ccccc-----cCccEEEecC
Confidence 00000 0258999999
Q ss_pred CCcCCccCCceEEEEeccccchhhcc--cCcc-ccCCCCCCcccccccccCCCCChh-HHHHHHHHHHhcHH-HHHHHHH
Q psy852 369 NKWLLTAFDSSCLWVADRYKLTSALV--VDPL-YLQHGHEGAIDYRHWGIPLSRRFR-SLKLWFVIRTYGLS-GLQKYIR 443 (891)
Q Consensus 369 HK~~~~p~~~g~~~~r~~~~~~~~~~--~~~~-y~~~~~~~~~~~~~~~~~~sr~~~-~l~~w~~l~~~g~~-G~~~ii~ 443 (891)
||++.+|.+.|++++++... ..+. ..+. |+..... .......+...+-... ..++..+++.+... |+.++.+
T Consensus 205 ~K~l~~~~G~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 281 (376)
T 3f0h_A 205 QKVLACPPGISVIVLAPRGV--ERVEKSKVRTMYFDLKDA-LKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVA 281 (376)
T ss_dssp TTTTCCCSSCEEEEECHHHH--HHHHTCCCCCSTTCHHHH-HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccccCCCceEEEEECHHHH--HHhhcCCCCceeecHHHH-HhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99998899999988876421 1111 1111 1110000 0000000111122222 25667778877777 7999999
Q ss_pred HHHHHHHHHHHhhccCCcccccc
Q psy852 444 RHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
+..++++++.+.|.+. +++++.
T Consensus 282 ~~~~~~~~l~~~L~~~-~~~~~~ 303 (376)
T 3f0h_A 282 RIASQAADFRAKIKDL-PFELVS 303 (376)
T ss_dssp HHHHHHHHHHHHTTTS-SEEECC
T ss_pred HHHHHHHHHHHHHHHc-CCccCc
Confidence 9999999999999876 466654
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=146.96 Aligned_cols=285 Identities=11% Similarity=0.022 Sum_probs=173.0
Q ss_pred HHHHHHHH-HHHHhhccCCccccccCC-CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH
Q psy852 443 RRHCELAK-LFEGKVRRDPRFEISNDV-RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 520 (891)
Q Consensus 443 ~~~lelAr-~l~~~L~~~~~~eVv~~i-tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~ 520 (891)
.+.++.++ .+++.+...+..+|+ + |+|+|+++..++... .... .| + .+.+....|++.
T Consensus 57 ~~~~~~ar~~la~ll~~~~~~evi--f~t~~~T~a~n~a~~~l----~~~~--------~G----d-~v~~~~~g~~~~- 116 (377)
T 3e77_A 57 AKIINNTENLVRELLAVPDNYKVI--FLQGGGCGQFSAVPLNL----IGLK--------AG----R-CADYVVTGAWSA- 116 (377)
T ss_dssp HHHHHHHHHHHHHHHTCCTTEEEE--EESSHHHHHHHHHHHHH----GGGS--------TT----C-EEEECCCSHHHH-
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEE--EEcCchHHHHHHHHHhc----cCCC--------CC----C-eEEEEECCHHHH-
Confidence 34445555 556666654446788 6 689999988777643 1110 00 1 233344445442
Q ss_pred HHHHH---cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec--CCccc---hhh-----hhcCC--------
Q psy852 521 KAAMM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT--LGTTS---CYR-----KSQGI-------- 579 (891)
Q Consensus 521 Kaa~l---~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat--aGTT~---c~~-----~ldGi-------- 579 (891)
+++.+ .|..++.+|+|.++..+++.++.+++++++ ...++.++ .|+.. |.+ ++|++
T Consensus 117 ~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~---lV~~~h~et~tG~~~pii~~~~~~~~~vD~~q~~g~~~i 193 (377)
T 3e77_A 117 KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDAS---YVYYCANETVHGVEFDFIPDVKGAVLVCDMSSNFLSKPV 193 (377)
T ss_dssp HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCS---CEEEESEETTTTEECSSCCCCTTCCEEEECTTTTTSSCC
T ss_pred HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCcc---EEEEeCccCchheEchhhhccCCCEEEEEcccccCCCCC
Confidence 33332 466777889887778888887766655432 22333332 36654 433 34543
Q ss_pred --CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHH
Q psy852 580 --EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGL 656 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~ 656 (891)
+..|-+++++|||++ |.|+|++++|++.. ...-...+.|+.-... .......++-. +..+.+-.+++.+-.
T Consensus 194 d~~~~~~~~~s~~K~~g-p~G~g~l~~~~~~l-~~~~~~~p~~~~~~~~----~~~~~~~~Tp~v~~i~~l~~al~~l~~ 267 (377)
T 3e77_A 194 DVSKFGVIFAGAQKNVG-SAGVTVVIVRDDLL-GFALRECPSVLEYKVQ----AGNSSLYNTPPCFSIYVMGLVLEWIKN 267 (377)
T ss_dssp CGGGCSEEEEEGGGTTS-CTTCEEEEEETTSC-SCCCTTSCGGGCHHHH----HTTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred chhhcCEEEEecccccC-CCccEEEEEcHHHH-hhccCCCCchhhHHHH----hhcCCCCCCchHHHHHHHHHHHHHHHH
Confidence 223678999999995 99999999998742 1110111223210000 00000001111 123456677777777
Q ss_pred h-hHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CC--ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc
Q psy852 657 S-GLQKYIRRHCELAKLFEGKVRRDPRFEISN-DV--RL-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE 731 (891)
Q Consensus 657 ~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~--~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~ 731 (891)
. |++++.++..+++++|.++|++++++++.. ++ .+ .+|+|++++...+ ..+...+++.|.+.|+....+-..
T Consensus 268 ~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~--~~~~~~~l~~l~~~Gi~~~~g~~~- 344 (377)
T 3e77_A 268 NGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGD--DALEKRFLDKALELNMLSLKGHRS- 344 (377)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCC--HHHHHHHHHHHHHTTEESCBCCTT-
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCc--hhHHHHHHHHHHHCCcEEeCCCCc-
Confidence 7 899999999999999999999999998643 22 33 4799999864220 112246778888889874333222
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
...+ +|+++++|++|||+++++|+++.+
T Consensus 345 -~g~iRiS~~~~~t~edId~l~~al~~~~~ 373 (377)
T 3e77_A 345 -VGGIRASLYNAVTIEDVQKLAAFMKKFLE 373 (377)
T ss_dssp -TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 2336 999999999999999999998763
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=147.34 Aligned_cols=279 Identities=11% Similarity=0.087 Sum_probs=181.2
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH----HH
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AA 523 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K----aa 523 (891)
+.+.+++.+...++ +|+ +++|+++++..++.+... . | ..+..|+++..+|++... .+
T Consensus 116 l~~~la~~~g~~~~-~v~--~t~g~t~al~~~~~~~~~----~----------~--~~~~~Vl~~~~~~~s~~~~~~~~~ 176 (465)
T 3e9k_A 116 IVGLMKDIVGANEK-EIA--LMNALTVNLHLLMLSFFK----P----------T--PKRYKILLEAKAFPSDHYAIESQL 176 (465)
T ss_dssp HHGGGHHHHTCCGG-GEE--ECSCHHHHHHHHHHHHCC----C----------C--SSSCEEEEETTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcC-CEE--EECCHHHHHHHHHHHhcc----c----------c--CCCCEEEEcCCcCCchHHHHHHHH
Confidence 34556666665444 566 678888888877665411 0 0 123468899999987444 55
Q ss_pred HHcCce-----EEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCC---
Q psy852 524 MMAFVR-----LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGI--- 579 (891)
Q Consensus 524 ~l~gv~-----v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi--- 579 (891)
...|.+ +..+|.+.++.+|+++|+++|++... ....++++. ..|+.. |+++ +|++
T Consensus 177 ~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~-~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~ 255 (465)
T 3e9k_A 177 QLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGD-SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAV 255 (465)
T ss_dssp HHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGG-GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred HHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCC-CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhc
Confidence 556654 45667888899999999999985421 111223332 345544 4442 3432
Q ss_pred ---------CCccEEEEcCcccC-CcccccEEEEEeCCccchhhhc-cCCCccccCC--------CCCccccCCcccccc
Q psy852 580 ---------EYADSFNVNVNKWL-LTAFDSSCLWVADRYKLTSALV-VDPLYLQHGH--------EGAIDYRHWGIPLSR 640 (891)
Q Consensus 580 ---------~~aDSIs~d~HK~L-~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~--------e~~~~~~~~ti~~SR 640 (891)
..+|.+++++|||+ ++|.++|+++++++. + +.+. ....|..+.. ...+......++.+.
T Consensus 256 g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~-~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt 333 (465)
T 3e9k_A 256 GNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKH-A-HTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISN 333 (465)
T ss_dssp TTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGG-T-TTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSC
T ss_pred CCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHH-H-hhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCC
Confidence 14799999999999 489999999997652 1 1111 1112211100 000000001111112
Q ss_pred c--ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC----------CCcEEeCCCc----eeEEEEEecCCcch
Q psy852 641 R--FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD----------PRFEISNDVR----LGLVCFRLRSENNL 704 (891)
Q Consensus 641 r--~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~----------~~~eil~~~~----~~iV~Fr~~~~~~~ 704 (891)
+ ...+.++.++..+...+++++.++..++++++.+.|++. ++++++.+.+ .++++|++. .
T Consensus 334 ~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~--- 409 (465)
T 3e9k_A 334 PPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-V--- 409 (465)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC-C---
T ss_pred ccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec-C---
Confidence 1 235678888888888899999999999999999999885 7899987642 678999985 2
Q ss_pred hhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 705 IADQNNRKLLEDINASGRLHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 705 ~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
....+.+.|.++|++.. ..+..++ +++ +.++|++||++++++|+++..
T Consensus 410 ----~~~~l~~~L~~~Gi~v~----~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~ 459 (465)
T 3e9k_A 410 ----PNKDVFQELEKRGVVCD----KRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILD 459 (465)
T ss_dssp ----TTCCHHHHHHTTTEECE----EETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHT
T ss_pred ----CHHHHHHHHHHCCEEEe----cCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHH
Confidence 23467888889998743 3445677 998 789999999999999998763
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.2e-12 Score=138.34 Aligned_cols=279 Identities=11% Similarity=0.027 Sum_probs=181.0
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa~ 524 (891)
++++++++.+...+..+++ +++|+++++..++.++.. +.-.|+++..+|++ +..++.
T Consensus 71 ~~~~~la~~~g~~~~~~v~--~t~g~t~al~~~~~~~~~-------------------~gd~Vl~~~~~~~~~~~~~~~~ 129 (393)
T 1vjo_A 71 EIQSLLRYVWQTENPLTIA--VSGTGTAAMEATIANAVE-------------------PGDVVLIGVAGYFGNRLVDMAG 129 (393)
T ss_dssp HHHHHHHHHHTCCCSCEEE--ESSCHHHHHHHHHHHHCC-------------------TTCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEE--EeCchHHHHHHHHHhccC-------------------CCCEEEEEcCChhHHHHHHHHH
Confidence 4455666666543332466 788999999988877521 11247777888888 888888
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC---------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI--------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi--------- 579 (891)
..|.+++.+|.+.++.+|+++|+++|++. ....+++. +..|... |.++ +|.+
T Consensus 130 ~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~ 206 (393)
T 1vjo_A 130 RYGADVRTISKPWGEVFSLEELRTALETH---RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIF 206 (393)
T ss_dssp HTTCEEEEEECCTTCCCCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCC
T ss_pred HcCCceEEEecCCCCCCCHHHHHHHHhhC---CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCc
Confidence 88999999999999999999999999863 11122232 2245443 4432 2322
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-----CCCccccCCCCCccccCCcccc-cc-cccchHHHH
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-----DPLYLQHGHEGAIDYRHWGIPL-SR-RFRSLKLWF 649 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-----~~~Yl~~~~e~~~~~~~~ti~~-SR-r~~aL~lW~ 649 (891)
..+|.++.++|||+++|.++|+++++++ +.+.+.. ...|........+ ........ +- ......++.
T Consensus 207 ~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~a~~~ 283 (393)
T 1vjo_A 207 LDAWGVDLAYSCSQKGLGCSPGASPFTMSSR--AIEKLQRRRTKVANWYLDMNLLGKY-WGSERVYHHTAPINLYYALRE 283 (393)
T ss_dssp TTTTTCSEEECCSSSTTCSCSSCEEEEECHH--HHHHHHTCSSCCSCSTTCHHHHHHH-HSTTCCCCSCCCHHHHHHHHH
T ss_pred ccccCccEEEEcCcccccCCCceEEEEECHH--HHHHHhccCCCCCceecCcHhhhhh-hccCCCCCCCCCHHHHHHHHH
Confidence 1369999999999999999999999765 2222211 0111100000000 00000111 11 122345566
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhC-CcEEE
Q psy852 650 VIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINAS-GRLHM 725 (891)
Q Consensus 650 ~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~ 725 (891)
+++.+...++++..++..++++++.+.|++. +++++.+.. .++++|+++.. .....+.+.|.++ |+.+.
T Consensus 284 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~gi~v~ 356 (393)
T 1vjo_A 284 ALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDG------VDGKAVARRLLNEHNIEVG 356 (393)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTT------CCHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcCCC------CCHHHHHHHHHhhCCEEEe
Confidence 6776666678899999999999999999987 788766532 36888888421 1356788889887 98866
Q ss_pred eeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHH
Q psy852 726 VPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 726 s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~ 759 (891)
.+........+ +++ ...+++++++++++.|++++
T Consensus 357 ~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 357 GGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp ECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 55544455667 884 55678889999999998764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-12 Score=156.69 Aligned_cols=203 Identities=16% Similarity=0.140 Sum_probs=141.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC-----Ccc-----cHHHHHHHHHhh--h--hcCCcceEEEeecccCccc
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-----NSL-----RGATLRQVMQQD--E--TMGYIPFFVSTTLGTTSCC 209 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-----g~i-----d~~~L~~~l~~~--~--~~g~~p~~V~~t~Gtt~~G 209 (891)
.|+++..+|+|+..++.+.|.++++++++.+ |.| |+++|+++|++. + +.+..|.+|+++.. |.+|
T Consensus 247 ~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G 325 (755)
T 2vyc_A 247 VVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDG 325 (755)
T ss_dssp EEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTS
T ss_pred EEEECCCchHHHHHHHHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCc
Confidence 4888999999999999877889999988643 456 999999999863 2 24666767777776 5799
Q ss_pred cccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhh
Q psy852 210 SFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKL 289 (891)
Q Consensus 210 avDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (891)
.+.|+++|+++|++++++||+|+|||+.+.+.+.+++ +
T Consensus 326 ~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~---------------~--------------------------- 363 (755)
T 2vyc_A 326 VCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYAD---------------H--------------------------- 363 (755)
T ss_dssp EEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTT---------------S---------------------------
T ss_pred eecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCC---------------c---------------------------
Confidence 9999999999999999999999999765433221100 0
Q ss_pred cccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccE------
Q psy852 290 KKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADS------ 363 (891)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds------ 363 (891)
.. +.+ +.+|.
T Consensus 364 --------------------------------------------------------------~~-~~g-~~aD~~~~~~i 379 (755)
T 2vyc_A 364 --------------------------------------------------------------YA-MRG-EPGDHNGPTVF 379 (755)
T ss_dssp --------------------------------------------------------------SS-SCS-CCCCCSSBEEE
T ss_pred --------------------------------------------------------------ch-hcC-CcCCccCCCeE
Confidence 00 000 01243
Q ss_pred EEEeCCCcCCccCCceEEEEeccc-cc-hhhcccCccccCCCCCCcccccccccCCCCCh-hHHHHHHHHHHhcHHHHHH
Q psy852 364 FNVNVNKWLLTAFDSSCLWVADRY-KL-TSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQK 440 (891)
Q Consensus 364 ~~~~~HK~~~~p~~~g~~~~r~~~-~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ 440 (891)
++.++||++.+|.++|++++++.. .+ ...+......++ .+|-.. ...++-.+++.+..+|..+
T Consensus 380 v~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~--------------s~sp~~~~iaal~aA~~~l~~~gg~~ 445 (755)
T 2vyc_A 380 ATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHA--------------TTSPLYAICASNDVAVSMMDGNSGLS 445 (755)
T ss_dssp EEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHTS--------------CSSCCHHHHHHHHHHHHHHSTHHHHH
T ss_pred EEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 899999999999889999998751 01 000000000000 011111 2345556777777777788
Q ss_pred HHHHHHHHHHHHHHhhccCCc---------cccccC
Q psy852 441 YIRRHCELAKLFEGKVRRDPR---------FEISND 467 (891)
Q Consensus 441 ii~~~lelAr~l~~~L~~~~~---------~eVv~~ 467 (891)
++++.+++++++++.|+++++ |+++++
T Consensus 446 ~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~ 481 (755)
T 2vyc_A 446 LTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNK 481 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSC
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccceeeccCc
Confidence 999999999999999998877 888875
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-12 Score=138.21 Aligned_cols=167 Identities=17% Similarity=0.124 Sum_probs=114.4
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDY 99 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~ 99 (891)
|+++-..+...|.++..+..... . |..+....++...+.+++++++|.+....
T Consensus 17 ~l~~~~~~~~~~~v~~a~~~~~~-~----~~~~~g~~~~~~~~~~~l~~~~g~~~~~v---------------------- 69 (359)
T 1svv_A 17 SFVNDYSVGMHPKILDLMARDNM-T----QHAGYGQDSHCAKAARLIGELLERPDADV---------------------- 69 (359)
T ss_dssp ECSCSCSSCCCHHHHHHHHHHTT-C----CCCSTTCSHHHHHHHHHHHHHHTCTTSEE----------------------
T ss_pred EecCCCcCCCCHHHHHHHHHHHh-h----ccccccccHHHHHHHHHHHHHhCCCCccE----------------------
Confidence 55554444555666665555442 2 22223345778889999999999654311
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH--HHHcCCeEEEEecCCCCcc
Q psy852 100 MTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA--AMMAFVRLKILEPDDKNSL 177 (891)
Q Consensus 100 ~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka--a~~~~~~v~~V~~d~~g~i 177 (891)
.+++||+.. +...+..++. +...|+++..+|++...+ +...|.+++.++.+ ++.+
T Consensus 70 -------~~~~g~t~a-~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~ 126 (359)
T 1svv_A 70 -------HFISGGTQT-NLIACSLALR--------------PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKL 126 (359)
T ss_dssp -------EEESCHHHH-HHHHHHHHCC--------------TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCC
T ss_pred -------EEeCCchHH-HHHHHHHHhC--------------CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCee
Confidence 135677654 3333322221 122488889999999884 56667899999987 7899
Q ss_pred cHHHHHHHHHhhh-hcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDE-TMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~-~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+++.. +.+..+.+|+++.. |.+|.+.| +++|+++|+++|+++|+|.+++++
T Consensus 127 d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 189 (359)
T 1svv_A 127 RVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLAS 189 (359)
T ss_dssp CHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHH
T ss_pred cHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhh
Confidence 9999999998651 23334567777766 57999998 999999999999999999999544
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-11 Score=136.38 Aligned_cols=280 Identities=11% Similarity=0.039 Sum_probs=173.2
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH--HHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV--EKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv--~Kaa~ 524 (891)
++.+.+++.+...+..+++ +++|+++++..++.++.. +.-.|+++..+|++. .+.+.
T Consensus 56 ~l~~~la~~~g~~~~~~i~--~~~g~t~a~~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~ 114 (393)
T 2huf_A 56 DIKEGVRYLFQTNNIATFC--LSASGHGGMEATLCNLLE-------------------DGDVILIGHTGHWGDRSADMAT 114 (393)
T ss_dssp HHHHHHHHHHTCCCSEEEE--ESSCHHHHHHHHHHHHCC-------------------TTCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEE--EcCcHHHHHHHHHHHHhC-------------------CCCEEEEECCCcchHHHHHHHH
Confidence 3444555555543333565 678999999988876511 112477777888874 23334
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcC----------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQG---------- 578 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldG---------- 578 (891)
..|.+++.+|.++++.+|+++|+++|++. ....++++ +..|... |.++ +|+
T Consensus 115 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~ 191 (393)
T 2huf_A 115 RYGADVRVVKSKVGQSLSLDEIRDALLIH---KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMF 191 (393)
T ss_dssp HTTCEEEEEECCTTCCCCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC
T ss_pred HcCCeeEEEeCCCCCCCCHHHHHHHHhcc---CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcc
Confidence 46889999999988999999999999862 11122222 2345543 4431 221
Q ss_pred C--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccC----CCccccCC-----CCCccccCCcccccccc-cchH
Q psy852 579 I--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD----PLYLQHGH-----EGAIDYRHWGIPLSRRF-RSLK 646 (891)
Q Consensus 579 i--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~----~~Yl~~~~-----e~~~~~~~~ti~~SRr~-~aL~ 646 (891)
+ ..+|.+++++|||+++|.|+|+++++++ +.+.+... ..|..... ........+. .++-.. ....
T Consensus 192 ~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a 268 (393)
T 2huf_A 192 MDRWEIDAMYTGSQKVLGAPPGITPVSFSHR--AVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIY-HHTISSTLLYG 268 (393)
T ss_dssp TTTTTCSEEECCSSSTTCCCSSCEEEEECHH--HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCC-SCCCCHHHHHH
T ss_pred hhhcCccEEEECCCcccccCCCeEEEEECHH--HHHHHhhcCCCCceEEEchHHHHhhhccccccCCC-CCCCCHHHHHH
Confidence 1 1379999999999999999999998743 22222211 12110000 0000000000 011111 1233
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--ce-eEEEEEecCCcchhhhhhHHHHHHHHHhC-Cc
Q psy852 647 LWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--RL-GLVCFRLRSENNLIADQNNRKLLEDINAS-GR 722 (891)
Q Consensus 647 lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~ 722 (891)
+..+++.+...++.+..++..++++++.+.|++. +++++.++ .. .+++|+++.. ...+++.+.|.++ |+
T Consensus 269 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~~gi 341 (393)
T 2huf_A 269 LREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQG------VDWLKAAQYAMKTYLV 341 (393)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCTT------CCHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcCCC------CCHHHHHHHHHHhCCE
Confidence 4446666656678889999999999999999987 78776553 23 3888888521 1346788888764 88
Q ss_pred EEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 723 LHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 723 ~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
.+..+....+...+ +++ ++.++++|++++++.|++++.
T Consensus 342 ~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~ 381 (393)
T 2huf_A 342 EISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVA 381 (393)
T ss_dssp ECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred EEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHH
Confidence 75444433345567 998 546789999999999998863
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-11 Score=136.48 Aligned_cols=279 Identities=12% Similarity=0.026 Sum_probs=175.9
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH--HHHHH
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE--KAAMM 525 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~--Kaa~l 525 (891)
+.+.+++.+...+. +++ +++|+++++..++.++. . +.-.|+++..+|++.. +.+..
T Consensus 47 l~~~la~~~g~~~~-~v~--~t~g~t~a~~~~~~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~~ 104 (392)
T 2z9v_A 47 VVDKAQKAMRLSNK-PVI--LHGEPVLGLEAAAASLI----S---------------PDDVVLNLASGVYGKGFGYWAKR 104 (392)
T ss_dssp HHHHHHHHTTCSSC-CEE--ESSCTHHHHHHHHHHHC----C---------------TTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-EEE--EeCCchHHHHHHHHHhc----C---------------CCCEEEEecCCcccHHHHHHHHH
Confidence 34455555554333 455 67899999998887651 0 1124788888888763 23344
Q ss_pred cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC----------
Q psy852 526 AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI---------- 579 (891)
Q Consensus 526 ~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi---------- 579 (891)
.|.+++.+|.++++.+|+++|+++|++... ...++++ +..|... |+++ +|++
T Consensus 105 ~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~--~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~ 182 (392)
T 2z9v_A 105 YSPHLLEIEVPYNEAIDPQAVADMLKAHPE--ITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHP 182 (392)
T ss_dssp HCSCEEEEECCTTSCCCHHHHHHHHHHCTT--CCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCG
T ss_pred cCCceEEeeCCCCCCCCHHHHHHHHhcCCC--CcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCccccc
Confidence 688999999999999999999999975211 1122222 2235443 4431 2221
Q ss_pred C--CccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-C--C--CccccCCC-CCccccCCccccccc-ccchHHHHH
Q psy852 580 E--YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-D--P--LYLQHGHE-GAIDYRHWGIPLSRR-FRSLKLWFV 650 (891)
Q Consensus 580 ~--~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~--~--~Yl~~~~e-~~~~~~~~ti~~SRr-~~aL~lW~~ 650 (891)
. .+|.+++++|||+++|.|+|+++++++. + +.+.. . + .|+.-... ..+.... ...++.. ...+.++.+
T Consensus 183 ~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~-~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~a 259 (392)
T 2z9v_A 183 EDCKADIYVTGPNKCLGAPPGLTMMGVSERA-W-AKMKANPLAPRASMLSIVDWENAWSRDK-PFPFTPSVSEINGLDVA 259 (392)
T ss_dssp GGGTCSEEEECSSSTTCCCSCCEEEEECHHH-H-HHHHTCTTSCCSSTTCSGGGTTTTSTTS-CCSSCCCHHHHHHHHHH
T ss_pred ccccceEEEecCcccccCCCceeEEEECHHH-H-HHhhhccCCCCceeccHHHHHhhhcccC-CCCCCCCHHHHHHHHHH
Confidence 1 3799999999999999999999997642 2 22211 0 1 11110000 0000000 0011111 112345667
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----ceeEEEEEecCCcchhhhhhHHHHHHHHHhC-CcEEE
Q psy852 651 IRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----RLGLVCFRLRSENNLIADQNNRKLLEDINAS-GRLHM 725 (891)
Q Consensus 651 L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~ 725 (891)
++.+...|+.+..++..++++++.+.|++. +++++.++ ..++++|+++.. ....++.+.|.++ |+.+.
T Consensus 260 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~~~~gi~v~ 332 (392)
T 2z9v_A 260 LDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTPDG------VDEKALRQAARARYGVVFS 332 (392)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECCTT------CCHHHHHHHHHHHHCEECE
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECCCC------CCHHHHHHHHHhcCCEEEe
Confidence 777777778899999999999999999887 78877633 357888988421 1346788889887 98865
Q ss_pred eeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 726 VPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 726 s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
.+........+ +++ .+.+|++||+++++.|+++..
T Consensus 333 ~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~ 369 (392)
T 2z9v_A 333 SGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMN 369 (392)
T ss_dssp ECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHH
Confidence 55443445567 985 448899999999999998763
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.5e-12 Score=137.18 Aligned_cols=203 Identities=10% Similarity=0.036 Sum_probs=136.1
Q ss_pred EEEecCCCChHH-HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCV-EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv-~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
+++++...|.+. ..++...|.+++.++++.++.+|+++|++++++.. .+.+|+++..+|.+|.+.|+++|.++|+
T Consensus 83 vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~ 158 (366)
T 1m32_A 83 VLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADP----TISHIAMVHSETTTGMLNPIDEVGALAH 158 (366)
T ss_dssp EEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHHHHH
T ss_pred EEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC----CeEEEEEecccCCcceecCHHHHHHHHH
Confidence 566777888774 45556667799999999999999999999998641 1457778888999999999999999999
Q ss_pred HcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHH
Q psy852 223 EFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLL 302 (891)
Q Consensus 223 ~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (891)
++|+++++|+|++....
T Consensus 159 ~~~~~li~Dea~~~~~~--------------------------------------------------------------- 175 (366)
T 1m32_A 159 RYGKTYIVDAMSSFGGI--------------------------------------------------------------- 175 (366)
T ss_dssp HHTCEEEEECTTTTTTS---------------------------------------------------------------
T ss_pred HcCCEEEEECCccccCc---------------------------------------------------------------
Confidence 99999999998842100
Q ss_pred HHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEE
Q psy852 303 SKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLW 382 (891)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~ 382 (891)
... +... .+|.++.++|||+++|.+.|+++
T Consensus 176 ---------------------------------------------~~~----~~~~-~~di~~~s~~K~~~~~~g~G~~~ 205 (366)
T 1m32_A 176 ---------------------------------------------PMD----IAAL-HIDYLISSANKCIQGVPGFAFVI 205 (366)
T ss_dssp ---------------------------------------------CCC----TTTT-TCSEEEEESSSTTCCCSSEEEEE
T ss_pred ---------------------------------------------Ccc----cccc-CccEEEecCcccccCCCceEEEE
Confidence 000 0000 25899999999999999999999
Q ss_pred Eeccccchhhccc-CccccCCCCCCccccccc--cc-CCCCCh-hHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHhh
Q psy852 383 VADRYKLTSALVV-DPLYLQHGHEGAIDYRHW--GI-PLSRRF-RSLKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKV 456 (891)
Q Consensus 383 ~r~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~--~~-~~sr~~-~~l~~w~~l~~~g~~G-~~~ii~~~lelAr~l~~~L 456 (891)
.++.. ...+.. ...|.... ...+..... +. .++-.. ...++..+++.+...| +.++.++..++++++.+.|
T Consensus 206 ~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L 282 (366)
T 1m32_A 206 AREQK--LAACKGHSRSLSLDL-YAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGM 282 (366)
T ss_dssp EEHHH--HTTCTTCCSCSTTCH-HHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHH--HHhhcCCCCCccccH-HHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHH
Confidence 98642 111211 11111100 000000000 00 112222 2345667777776666 8899999999999999999
Q ss_pred ccCCccccccC
Q psy852 457 RRDPRFEISND 467 (891)
Q Consensus 457 ~~~~~~eVv~~ 467 (891)
++. +++++.+
T Consensus 283 ~~~-~~~~~~~ 292 (366)
T 1m32_A 283 RAL-GFNTLLD 292 (366)
T ss_dssp HHT-TCCBSSC
T ss_pred HHC-CCeeccC
Confidence 886 6776643
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-11 Score=134.25 Aligned_cols=269 Identities=14% Similarity=0.169 Sum_probs=171.6
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH--
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM-- 525 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l-- 525 (891)
+.+.+++.+...+. +++ +++|+++++..++.+++..+.+ +...|+++..+|++...++..
T Consensus 73 l~~~la~~~~~~~~-~v~--~~~ggt~a~~~a~~~l~~~~~~---------------~gd~Vl~~~~~~~~~~~~~~~~~ 134 (423)
T 3lvm_A 73 ARNQIADLVGADPR-EIV--FTSGATESDNLAIKGAANFYQK---------------KGKHIITSKTEHKAVLDTCRQLE 134 (423)
T ss_dssp HHHHHHHHHTCCGG-GEE--EESSHHHHHHHHHHHHHHHHTT---------------TCCEEEEETTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCC-eEE--EeCChHHHHHHHHHHHHHhhcc---------------CCCEEEECCccchHHHHHHHHHH
Confidence 33455555554333 455 6889999999999887654321 123588999999999888754
Q ss_pred -cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc--------hhhh-----hcCC-------
Q psy852 526 -AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS--------CYRK-----SQGI------- 579 (891)
Q Consensus 526 -~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~--------c~~~-----ldGi------- 579 (891)
.|.+++.+|.++++.+|+++|+++|+++ +.+|+. ..|.+. |.++ +|.+
T Consensus 135 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~ 208 (423)
T 3lvm_A 135 REGFEVTYLAPQRNGIIDLKELEAAMRDD------TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP 208 (423)
T ss_dssp HTTCEEEEECCCTTSCCCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC
T ss_pred HcCCEEEEeccCCCCccCHHHHHHhcCCC------cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCC
Confidence 4889999999999999999999999763 223332 234443 4431 2211
Q ss_pred -----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHH
Q psy852 580 -----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRT 653 (891)
Q Consensus 580 -----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~ 653 (891)
..+|.+++++||+ ++|.|+|+++++++... . + .. ++..... . ..+. .++-. .....+..+++.
T Consensus 209 ~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~~-~-~--~~-~~~~~~~-~---~~~~-~~~~~~~~~~a~~~al~~ 277 (423)
T 3lvm_A 209 IDLSQLKVDLMSFSGHKI-YGPKGIGALYVRRKPRV-R-I--EA-QMHGGGH-E---RGMR-SGTLPVHQIVGMGEAYRI 277 (423)
T ss_dssp CCTTTSCCSEEEEESTTT-TSCSSCEEEEECBTTBC-C-C--CC-SSCSSCT-T---TTTC-CSCCCHHHHHHHHHHHHH
T ss_pred cChhhcCCCEEEechHHh-cCCCCeEEEEEeccccC-C-C--Cc-cccCCcc-c---cccc-CCCCCHHHHHHHHHHHHH
Confidence 1379999999995 56888999999865211 1 1 11 1110000 0 0000 00111 112233344444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
+.. .+++..++..+++++|.+.|++++++++..++. .++++|++.+. ....+.+.|.+ +.+..+..+
T Consensus 278 ~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~--i~v~~g~~~ 347 (423)
T 3lvm_A 278 AKE-EMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMALKD--LAVSSGSAC 347 (423)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTS-------CHHHHHHHTTT--EECBCCCC-
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCC-------CHHHHHHHHhh--heeccCccc
Confidence 333 378888999999999999999999999986654 46889998543 34566666655 222221111
Q ss_pred c-------------------CCeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 731 E-------------------QNDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 731 ~-------------------g~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
. ....+ ++++..+|++||+++++.|++++..
T Consensus 348 ~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~ 398 (423)
T 3lvm_A 348 TSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR 398 (423)
T ss_dssp ----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 02456 9999899999999999999998753
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=152.07 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=119.0
Q ss_pred HHHHHHHHHhhccC--CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH
Q psy852 446 CELAKLFEGKVRRD--PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 446 lelAr~l~~~L~~~--~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
.++.+++++.+... +.-.+.+-+++|++|+|+.++.+++..+.++++. +|....++.|++|..+|+++.+++
T Consensus 98 ~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~------~G~~~~~~~vi~~~~~h~s~~~~~ 171 (502)
T 3hbx_A 98 NRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA------EGKPVDKPNIVTGANVQVCWEKFA 171 (502)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH------TTCCCSCCEEEEETTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh------cCCCCCCcEEEEcCCchHHHHHHH
Confidence 34455666666543 2223344568899999999999999887765432 343345678999999999999999
Q ss_pred HHcCceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhhh-----------hcC
Q psy852 524 MMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYRK-----------SQG 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~~-----------ldG 578 (891)
.+.|++++.||++++ ++||+++|+++|+++ +.+|+.+.|++. |.++ +|+
T Consensus 172 ~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~ 245 (502)
T 3hbx_A 172 RYFEVELKEVKLSEGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDA 245 (502)
T ss_dssp HHTTCEEEEECCBTTBCSCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_pred HHcCceeEEEecCCCcCcCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEEC
Confidence 999999999999876 999999999999874 456666555543 3322 332
Q ss_pred -------------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhc
Q psy852 579 -------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV 615 (891)
Q Consensus 579 -------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~ 615 (891)
++++||+++++|||+++|.+||+++++++..+...+.
T Consensus 246 A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~ 301 (502)
T 3hbx_A 246 ASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELI 301 (502)
T ss_dssp TTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGC
T ss_pred CccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhc
Confidence 2479999999999999999999999998876654433
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-11 Score=136.29 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=171.3
Q ss_pred CccccccCCCCCCHHHHHHHHHHHhcCCCCCccc---cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 17 HPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWA---ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 17 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~---~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
...|+++...++..+.++..+...+-+..+.... ..+.......++.+++++++|.+....
T Consensus 28 ~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v---------------- 91 (416)
T 1qz9_A 28 GVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEV---------------- 91 (416)
T ss_dssp TCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSE----------------
T ss_pred CeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccE----------------
Confidence 3468887766666666666555544322111110 001112445567889999999864321
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhcc-ccCCccccccccCCeEEEecCCCChHHHHHHH-H---c--CCeE
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQK-KIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-M---A--FVRL 166 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~-~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~---~--~~~v 166 (891)
.+++||+. +....+..++... ...| .+-+|+++..+|.++..++. + . |.++
T Consensus 92 -------------~~~~g~t~-al~~al~~~~~~~~~~~~--------gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~ 149 (416)
T 1qz9_A 92 -------------VVTDTTSI-NLFKVLSAALRVQATRSP--------ERRVIVTETSNFPTDLYIAEGLADMLQQGYTL 149 (416)
T ss_dssp -------------EECSCHHH-HHHHHHHHHHHHHHHHST--------TCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE
T ss_pred -------------EEeCChhH-HHHHHHHhhcccccccCC--------CCcEEEEcCCCCCchHHHHHHHHHHhcCCceE
Confidence 13456642 2222222222110 0000 12357788889999877652 2 3 6788
Q ss_pred EEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCc
Q psy852 167 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRP 246 (891)
Q Consensus 167 ~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~ 246 (891)
+.|++ +++|+++|++. +.+|+++..+|.+|.+.|+++|+++|+++|+++|+|+|++....
T Consensus 150 ~~v~~-------~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~------- 209 (416)
T 1qz9_A 150 RLVDS-------PEELPQAIDQD------TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV------- 209 (416)
T ss_dssp EEESS-------GGGHHHHCSTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-------
T ss_pred EEeCc-------HHHHHHHhCCC------ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCc-------
Confidence 88887 78888887543 56889999999999999999999999999999999998841100
Q ss_pred cCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccc
Q psy852 247 FMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSY 326 (891)
Q Consensus 247 ~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (891)
T Consensus 210 -------------------------------------------------------------------------------- 209 (416)
T 1qz9_A 210 -------------------------------------------------------------------------------- 209 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCc-eEEEEeccccchhhccc-CccccCCCC
Q psy852 327 RDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDS-SCLWVADRYKLTSALVV-DPLYLQHGH 404 (891)
Q Consensus 327 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~-g~~~~r~~~~~~~~~~~-~~~y~~~~~ 404 (891)
...+... .+|.+++++||+++++.+. |++++++... ..+.. ...|.....
T Consensus 210 ---------------------~~~~~~~-----~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~--~~l~~~~~g~~g~~~ 261 (416)
T 1qz9_A 210 ---------------------PVDLHQA-----GADYAIGCTYKYLNGGPGSQAFVWVSPQLC--DLVPQPLSGWFGHSR 261 (416)
T ss_dssp ---------------------CCCHHHH-----TCSEEEECSSSTTCCCTTCCCEEEECTTTT--TTSCCSCCCGGGBCT
T ss_pred ---------------------CCChhhc-----CCCEEEecCcccCCCCCCCeEEEEECHHHH--hccCCCccccCcccc
Confidence 0000000 2589999999998888888 9999986521 11111 111111100
Q ss_pred --C--Ccccc--cccccC-CCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccC-C--ccccccC
Q psy852 405 --E--GAIDY--RHWGIP-LSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD-P--RFEISND 467 (891)
Q Consensus 405 --~--~~~~~--~~~~~~-~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~-~--~~eVv~~ 467 (891)
+ ..+.+ ...... ++... ..++++.+++.+..+++.++.++..++++++.+.|.+. + +++++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~ 335 (416)
T 1qz9_A 262 QFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTP 335 (416)
T ss_dssp TSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSC
T ss_pred ccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCC
Confidence 0 00000 001111 22232 34567788888877789999999999999999999875 5 7777654
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-11 Score=131.71 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=76.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.++..++...+.+++.++. +|+++|++.+++....|..+.+|+++..+|.+|.+.|+++|+++|++
T Consensus 129 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 203 (399)
T 3tqx_A 129 AIISDELNHASIIDGIRLCKAQRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADK 203 (399)
T ss_dssp EEEEETTCCHHHHHHHHSCCSEEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHcCCceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH
Confidence 5888899999999999888888888885 57889999998865555567899999999999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.+|+
T Consensus 204 ~~~~li~De~~~ 215 (399)
T 3tqx_A 204 YNALVMVDDSHA 215 (399)
T ss_dssp TTCEEEEECTTT
T ss_pred cCCEEEEECCcc
Confidence 999999999994
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-11 Score=134.18 Aligned_cols=281 Identities=10% Similarity=0.030 Sum_probs=177.1
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH--HHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE--KAA 523 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~--Kaa 523 (891)
.++.+.+++.+...+..+++ +++|+++++..++.+... +.-.|+++..+|++.. +++
T Consensus 54 ~~l~~~la~~~~~~~~~~v~--~~~g~t~al~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~ 112 (396)
T 2ch1_A 54 DEVKDGLRYIFQTENRATMC--VSGSAHAGMEAMLSNLLE-------------------EGDRVLIAVNGIWAERAVEMS 112 (396)
T ss_dssp HHHHHHHHHHHTCCCSCEEE--ESSCHHHHHHHHHHHHCC-------------------TTCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEE--ECCcHHHHHHHHHHHhcC-------------------CCCeEEEEcCCcccHHHHHHH
Confidence 34445566666554433455 678999999988776511 1124777777888764 466
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCCC-------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGIE------- 580 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi~------- 580 (891)
...|.+++.+|.+.++.+|+++|+++|++.. ...++++ +..|+.. |.++ +|.+.
T Consensus 113 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~---~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~ 189 (396)
T 2ch1_A 113 ERYGADVRTIEGPPDRPFSLETLARAIELHQ---PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPF 189 (396)
T ss_dssp HHTTCEEEEEECCTTSCCCHHHHHHHHHHHC---CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCC
T ss_pred HHcCCceEEecCCCCCCCCHHHHHHHHHhCC---CCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCcc
Confidence 7789999999999899999999999998631 1122332 3345543 4442 33331
Q ss_pred -----CccEEEEcCcccCCcccccEEEEEeCCccchhhhccC---C-CccccCC-----CCCccccCCcccccccc-cch
Q psy852 581 -----YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD---P-LYLQHGH-----EGAIDYRHWGIPLSRRF-RSL 645 (891)
Q Consensus 581 -----~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~---~-~Yl~~~~-----e~~~~~~~~ti~~SRr~-~aL 645 (891)
.+|.+..++||++++|.|+|+++++++ .+ ..+... . .|..+.. ........+ ..++-.. ..+
T Consensus 190 ~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 266 (396)
T 2ch1_A 190 YMDKWEIDAVYTGAQKVLGAPPGITPISISPK-AL-DVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKR-YHHTVASNLIF 266 (396)
T ss_dssp CTTTTTCCEEECCCC-CCCCCSSCEEEEECHH-HH-HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCC-CCCCCCHHHHH
T ss_pred chhhcCcCEEEEcCCccccCCCCeEEEEECHH-HH-HhhhhccCcccceEechHHHHHhhhhhcccCC-CCCCCcHHHHH
Confidence 259999999999999999999998763 22 222111 0 1110000 000000000 0111111 123
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc----eeEEEEEecCCcchhhhhhHHHHHHHHHhC-
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR----LGLVCFRLRSENNLIADQNNRKLLEDINAS- 720 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~- 720 (891)
.+..+++.+..+++++..++..++++++.+.|++. +++++.+.. .++++|+++.. ....++.+.|.++
T Consensus 267 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~~ 339 (396)
T 2ch1_A 267 ALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKG------VDWWKVSQYAMNNF 339 (396)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTT------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCCC------CCHHHHHHHHHHhC
Confidence 44556666666788999999999999999999987 787765433 13888888421 1356788888765
Q ss_pred CcEEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 721 GRLHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 721 G~~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
|+.+..+........+ +++ +..++++|++++++.|+++.+
T Consensus 340 gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~ 381 (396)
T 2ch1_A 340 SLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLK 381 (396)
T ss_dssp CBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred CEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH
Confidence 9875444333345567 998 557799999999999998873
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-11 Score=131.71 Aligned_cols=263 Identities=11% Similarity=0.043 Sum_probs=169.6
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-HHHHHHHcCceEEEecCCCCCCcC
Q psy852 464 ISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC-VEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 464 Vv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S-v~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
++ +++|+++++..++.+++. .++-+++.+...|.+ ...++...|.+++.+|.++++.+|
T Consensus 59 v~--~~~g~t~a~~~~~~~~~~------------------~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d 118 (366)
T 1m32_A 59 VL--LQGSGSYAVEAVLGSALG------------------PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPD 118 (366)
T ss_dssp EE--EESCHHHHHHHHHHHSCC------------------TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCC
T ss_pred EE--EecChHHHHHHHHHHhcC------------------CCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCC
Confidence 55 678999999988877531 123356777788986 456667778899999999999999
Q ss_pred HHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcC----------CC--CccEEEEcCcccCC
Q psy852 543 GATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQG----------IE--YADSFNVNVNKWLL 594 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldG----------i~--~aDSIs~d~HK~L~ 594 (891)
+++|+++|+++.. ...++++. ..|... |+++ +|+ +. .+|.++.++|||++
T Consensus 119 ~~~l~~~l~~~~~--~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~ 196 (366)
T 1m32_A 119 VQAIDAILNADPT--ISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQ 196 (366)
T ss_dssp HHHHHHHHHHCTT--CCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred HHHHHHHHhcCCC--eEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCccccc
Confidence 9999999987421 11222222 235443 4431 121 22 37999999999999
Q ss_pred cccccEEEEEeCCccchhhhccC-CCccccCCCCCccccCC----cc-ccccc-ccchHHHHHHHHHHHhh-HHHHHHHH
Q psy852 595 TAFDSSCLWVADRYKLTSALVVD-PLYLQHGHEGAIDYRHW----GI-PLSRR-FRSLKLWFVIRTYGLSG-LQKYIRRH 666 (891)
Q Consensus 595 ~P~g~G~llvR~~~~L~~~l~~~-~~Yl~~~~e~~~~~~~~----ti-~~SRr-~~aL~lW~~L~~lG~~G-~~~~i~~~ 666 (891)
+|.|+|+++++++ +.+.+... ..|..... .....+ +. .++-. .....+..+++.+...| +.+..++.
T Consensus 197 ~~~g~G~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~ 271 (366)
T 1m32_A 197 GVPGFAFVIAREQ--KLAACKGHSRSLSLDLY---AQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRY 271 (366)
T ss_dssp CCSSEEEEEEEHH--HHTTCTTCCSCSTTCHH---HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCceEEEEECHH--HHHhhcCCCCCccccHH---HHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHH
Confidence 9999999999864 21211110 11110000 000000 00 01111 11234556666666666 88889999
Q ss_pred HHHHHHHHHHhccCCCcEEeCCC--cee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCC
Q psy852 667 CELAKLFEGKVRRDPRFEISNDV--RLG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQER 742 (891)
Q Consensus 667 ~~lA~~L~~~L~~~~~~eil~~~--~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~ 742 (891)
.++++++.+.|++. +++++.++ ..+ +++|++++. .+....++.+.|.++|+....+... +...+ ++++..
T Consensus 272 ~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~~-~~~~iRi~~~~~ 345 (366)
T 1m32_A 272 QQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPED----PQYRFSEFYRRLKEQGFVIYPGKVS-QSDCFRIGNIGE 345 (366)
T ss_dssp HHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCC----TTCCHHHHHHHHHHTTEECEECCCS-SSCEEEEECCSS
T ss_pred HHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCcc----CCCCHHHHHHHHHHCCEEEECCcCC-CCCEEEEecCCC
Confidence 99999999999987 77776542 344 888988531 0113567888898889775444333 44566 999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy852 743 KRKDDLAYKRSFFVRML 759 (891)
Q Consensus 743 tT~edId~li~~L~ei~ 759 (891)
++++||+++++.|+++.
T Consensus 346 ~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 346 VYAADITALLTAIRTAM 362 (366)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=141.43 Aligned_cols=156 Identities=19% Similarity=0.157 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q psy852 28 NSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQ 107 (891)
Q Consensus 28 ~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~ 107 (891)
...|.++..+.....+ .....+ ...+..++.+++++++| ++.. . .
T Consensus 19 ~~~~~v~~a~~~~~~~---~~~~~~--~~~~~~~l~~~la~~~g-~~~~--------v---------------------~ 63 (356)
T 1v72_A 19 GASPEVAQALVKHSSG---QAGPYG--TDELTAQVKRKFCEIFE-RDVE--------V---------------------F 63 (356)
T ss_dssp CCCHHHHHHHHHTTSS---CCCSTT--CSHHHHHHHHHHHHHHT-SCCE--------E---------------------E
T ss_pred CCCHHHHHHHHhhccC---cccccc--cchHHHHHHHHHHHHhC-CCCc--------E---------------------E
Confidence 3457777666555322 111111 23566778889999998 4211 0 1
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH--HHHc--CCeEEEEecCCCCcccHHHHH
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA--AMMA--FVRLKILEPDDKNSLRGATLR 183 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka--a~~~--~~~v~~V~~d~~g~id~~~L~ 183 (891)
+++||+.. +...+..++. +...|+++..+|++...+ +... |.+++.||++ ++.+|+++|+
T Consensus 64 ~~~~gt~a-~~~al~~~~~--------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~ 127 (356)
T 1v72_A 64 LVPTGTAA-NALCLSAMTP--------------PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLR 127 (356)
T ss_dssp EESCHHHH-HHHHHHTSCC--------------TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHH
T ss_pred EeCCccHH-HHHHHHHhcC--------------CCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHH
Confidence 35688753 3222222211 223478888899998776 6544 7799999886 5899999999
Q ss_pred H-HHHhhh-hcCCcceEEEeecccCcccc---ccCHHHHHHHHHHcCCceeeecccc
Q psy852 184 Q-VMQQDE-TMGYIPFFVSTTLGTTSCCS---FDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 184 ~-~l~~~~-~~g~~p~~V~~t~Gtt~~Ga---vDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
+ ++++.. ..+..+.+|+++..++ +|. .+++++|+++|+++|+++|+|++|+
T Consensus 128 ~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~ 183 (356)
T 1v72_A 128 ERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRF 183 (356)
T ss_dssp HHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred HHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhh
Confidence 9 886521 1223456777776554 999 7889999999999999999999984
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-13 Score=149.41 Aligned_cols=262 Identities=12% Similarity=0.021 Sum_probs=169.4
Q ss_pred CCCCHHHHHHHHHHHhcC--CCCCc-c---ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy852 26 SGNSYPSVLADMLSDAIG--CIGFS-W---AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDY 99 (891)
Q Consensus 26 ~~~~~~~~~~~~l~~~~n--~~~~~-~---~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~ 99 (891)
+.+..+.++..|...+.+ .|+.+ + ..++.+.++-.++.+.+++++|.++... +
T Consensus 13 pt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~--------------v------- 71 (361)
T 3m5u_A 13 PSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYE--------------V------- 71 (361)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEE--------------E-------
T ss_pred CCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCce--------------E-------
Confidence 344667888888776653 23222 2 2367788888899999999999974310 0
Q ss_pred CCCCCCCCc-ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCc--
Q psy852 100 MTPANQPQS-LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNS-- 176 (891)
Q Consensus 100 ~t~~~~~~~-~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~-- 176 (891)
.| |+|||.+.|+.+.++. . +. ...+|+++..+|.++..+.+ .|.++.+|++|.+|.
T Consensus 72 -------~f~t~~~T~a~n~~~~~~~--~-~~----------~~~~i~~~~~~~~~~~~a~~-~G~~v~~~~~~~~g~~~ 130 (361)
T 3m5u_A 72 -------LFLQGGASLQFAMIPMNLA--L-NG----------VCEYANTGVWTKKAIKEAQI-LGVNVKTVASSEESNFD 130 (361)
T ss_dssp -------EEESSHHHHHHHHHHHHHC--C-SS----------CEEEEECSHHHHHHHHHHHH-TTCCEEEEEECTTTTSC
T ss_pred -------EEEcCcHHHHHHHHHHhcC--C-CC----------eEEEEeCCHHHHHHHHHHHH-cCCceEEEecccCcCCC
Confidence 24 6899988777777664 1 00 12356777777765544433 467999999999885
Q ss_pred ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCccccc
Q psy852 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDN 256 (891)
Q Consensus 177 id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~ 256 (891)
++++. + |+++ +.+|+++..+|.+|++.|. +++ +|+++|||++++
T Consensus 131 ~~~~~-~--l~~~------t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~--------------------- 174 (361)
T 3m5u_A 131 HIPRV-E--FSDN------ADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSD--------------------- 174 (361)
T ss_dssp SCCCC-C--CCTT------SSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGG---------------------
T ss_pred cCChh-h--cCCC------CCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccc---------------------
Confidence 57766 3 5544 3588899999999998552 333 388888888772
Q ss_pred CCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEE
Q psy852 257 LHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLH 336 (891)
Q Consensus 257 ~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (891)
T Consensus 175 -------------------------------------------------------------------------------- 174 (361)
T 3m5u_A 175 -------------------------------------------------------------------------------- 174 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcc-cCccccCCCCCCccccccccc
Q psy852 337 VDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGI 415 (891)
Q Consensus 337 ~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~ 415 (891)
.+.. .-+ +..+|.+++++|||+ +|.+.|++++|++..- .... ..|.|+..... .. ....
T Consensus 175 ------~g~~-~id-------~~~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~-~~~~~~~p~~~~~~~~--~~--~~~~ 234 (361)
T 3m5u_A 175 ------FFSR-KVD-------FSNIALFYGGVQKNA-GISGLSCIFIRKDMLE-RSKNKQIPSMLNYLTH--AE--NQSL 234 (361)
T ss_dssp ------TTSS-CCC-------CTTEEEEEEETTTTS-SCTTCEEEEEEHHHHH-HHHTCCCCGGGCHHHH--HH--TTTC
T ss_pred ------cCCC-CCC-------cccCCEEEEechhcc-CCCccEEEEEcHHHHh-hhcCCCCCceeehHHH--hh--cCCC
Confidence 1100 000 012589999999999 5999999999975321 1111 12333211000 00 0001
Q ss_pred CCCCCh-hHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCcc-ccc
Q psy852 416 PLSRRF-RSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRF-EIS 465 (891)
Q Consensus 416 ~~sr~~-~~l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~-eVv 465 (891)
.++-+. ..+.+-.+++++-.. |+.++.++..++++++.+.|.+.+++ +++
T Consensus 235 ~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~ 287 (361)
T 3m5u_A 235 FNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGH 287 (361)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEES
T ss_pred CCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeecc
Confidence 122222 356777888888888 89999999999999999999998875 554
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-11 Score=133.95 Aligned_cols=286 Identities=11% Similarity=0.101 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccch
Q psy852 437 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH 516 (891)
Q Consensus 437 G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH 516 (891)
.|........++.+.+++.+...++ +++ +++|+++++..++.+.+. .+.-.|+++..+|
T Consensus 53 ~y~~~~~~~~~l~~~la~~~g~~~~-~v~--~~~g~t~a~~~~~~~~~~------------------~~gd~vl~~~~~~ 111 (390)
T 1elu_A 53 ANQHIQQLIAQLRQALAETFNVDPN-TIT--ITDNVTTGCDIVLWGLDW------------------HQGDEILLTDCEH 111 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGG-GEE--EESSHHHHHHHHHHHSCC------------------CTTCEEEEETTCC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHH-HEE--EeCChHHHHHHHHhCCCC------------------CCCCEEEEecCcc
Confidence 3444334455566677777754333 455 678999999988877530 0123577888888
Q ss_pred HHHHHH----HHHcCceEEEecCC--CCCCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc--------hh----hh
Q psy852 517 SCVEKA----AMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS--------CY----RK 575 (891)
Q Consensus 517 ~Sv~Ka----a~l~gv~v~~Vp~d--~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c~----~~ 575 (891)
.+...+ +...|.+++.+|.+ .++.+|+++|+++|++.+ ..++++.. .|... |. ++
T Consensus 112 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~----~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ 187 (390)
T 1elu_A 112 PGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKT----RLVILSHLLWNTGQVLPLAEIMAVCRRHQGNY 187 (390)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTE----EEEEEESBCTTTCCBCCHHHHHHHHHHCCSSS
T ss_pred cHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCc----eEEEEeccccCCceecCHHHHHHHHhhhhhhc
Confidence 886543 45668899999987 688999999999987531 12223322 35443 66 52
Q ss_pred -----hcCC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCcccc--CC-CCCccccC-
Q psy852 576 -----SQGI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQH--GH-EGAIDYRH- 633 (891)
Q Consensus 576 -----ldGi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~--~~-e~~~~~~~- 633 (891)
+|++ ..+|.++.++|||+++|.|+|+++++++. + +.+.. ...+... .. ...+.+..
T Consensus 188 ~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 265 (390)
T 1elu_A 188 PVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDC-L-GEINPTYVGWRSITYGAKGEPTGWAEG 265 (390)
T ss_dssp CCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTT-G-GGCCCCSCCTTTEEECTTSCEEEECSG
T ss_pred CcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHh-H-hhcCCccccCCcccccccCcccccccc
Confidence 3321 24799999999999999999999998642 2 22211 0011000 00 00000000
Q ss_pred -Cccc-cccc-ccchHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcchhhh
Q psy852 634 -WGIP-LSRR-FRSLKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENNLIAD 707 (891)
Q Consensus 634 -~ti~-~SRr-~~aL~lW~~L~~lG~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~~~~d 707 (891)
..+. ++-. .....++.+++.+...+ +++..++..++++++.+.|++.++++++.+ ...++++|++.+.
T Consensus 266 ~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~------ 339 (390)
T 1elu_A 266 GKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSP------ 339 (390)
T ss_dssp GGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSS------
T ss_pred hHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCC------
Confidence 0011 1111 11234556676666666 888999999999999999999889998763 3578889988421
Q ss_pred hhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 708 QNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 708 ~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
....++.+.|.+.|+.+..+. +...+ ++++..++++|++++++.|+++
T Consensus 340 ~~~~~~~~~l~~~gi~v~~~~---~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 340 LGHRAIVQKLEEQRIYLRTIA---DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp SCHHHHHHHHHHTTEECEEET---TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCEEEEecC---CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 135678888988898754443 34566 9998889999999999988753
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.2e-12 Score=137.94 Aligned_cols=83 Identities=5% Similarity=-0.006 Sum_probs=70.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|++...++...|.+++.+++++++.+|+++|++.+++. +.+|+.+.. +|.+.|+++|.++|++
T Consensus 76 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~---tG~~~~l~~i~~l~~~ 146 (375)
T 2fnu_A 76 EIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINER------TKAIVSVDY---AGKSVEVESVQKLCKK 146 (375)
T ss_dssp EEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTT------EEEEEEECG---GGCCCCHHHHHHHHHH
T ss_pred EEEECCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcCcC------ceEEEEeCC---cCCccCHHHHHHHHHH
Confidence 5888999999999998878889999999988999999999888653 234444443 8999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|+|++
T Consensus 147 ~~~~li~D~a~~ 158 (375)
T 2fnu_A 147 HSLSFLSDSSHA 158 (375)
T ss_dssp HTCEEEEECTTC
T ss_pred cCCEEEEECccc
Confidence 999999999984
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.6e-12 Score=144.44 Aligned_cols=275 Identities=13% Similarity=0.073 Sum_probs=165.3
Q ss_pred CHHHHHHHHHHHhcCCC--C----CccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy852 29 SYPSVLADMLSDAIGCI--G----FSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTP 102 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~--~----~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~ 102 (891)
..+.++..+...+.|.. + ..|..++...++|..+.+++++++|.+.+... ..+
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~-----~~V---------------- 114 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWG-----VNV---------------- 114 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEE-----EEC----------------
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCc-----eEE----------------
Confidence 45666666655554432 1 12345677889999999999999999743100 000
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH--------HHcC--CeEEEEecC
Q psy852 103 ANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA--------MMAF--VRLKILEPD 172 (891)
Q Consensus 103 ~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa--------~~~~--~~v~~V~~d 172 (891)
.+ +.|+ +.|...+. +--+ +...|+++..+|.+..... .+.| .+.+.+++|
T Consensus 115 ----~~-~sGs-~an~~~~~-all~-------------pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~ 174 (483)
T 1rv3_A 115 ----QP-YSGS-PANFAVYT-ALVE-------------PHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVN 174 (483)
T ss_dssp ----CC-SSHH-HHHHHHHH-HHTC-------------TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBC
T ss_pred ----EE-CCcH-HHHHHHHH-HhcC-------------CCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccc
Confidence 12 3444 44444221 1111 1224777777777665321 1222 345555557
Q ss_pred -CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCC
Q psy852 173 -DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251 (891)
Q Consensus 173 -~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~ 251 (891)
++|.+|+++|++.+++.. |.+|++ ..++.+ .+.|+++|+++|+++|++|++|+|++..+...
T Consensus 175 ~~~~~iD~d~le~~i~~~~-----tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~---------- 237 (483)
T 1rv3_A 175 PDTGYIDYDRLEENARLFH-----PKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVA---------- 237 (483)
T ss_dssp TTTCSBCHHHHHHHHHHHC-----CSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHH----------
T ss_pred cCCCcCCHHHHHHHHhhcC-----CcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhccccc----------
Confidence 679999999999998432 346666 555666 89999999999999999999999983110000
Q ss_pred cccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccccccc
Q psy852 252 TSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIF 331 (891)
Q Consensus 252 ~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (891)
T Consensus 238 -------------------------------------------------------------------------------- 237 (483)
T 1rv3_A 238 -------------------------------------------------------------------------------- 237 (483)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhc-ccCccccCCCCCCcccc
Q psy852 332 DVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSAL-VVDPLYLQHGHEGAIDY 410 (891)
Q Consensus 332 ~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~-~~~~~y~~~~~~~~~~~ 410 (891)
++ .+. + +..+|.++.++||++.+|.+ |++++++...-.... .....| .....++.
T Consensus 238 ~~--------------~~~--p----~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~g~~~~y---~~~~~~~~ 293 (483)
T 1rv3_A 238 GV--------------VPS--P----FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILY---NLESLINS 293 (483)
T ss_dssp TS--------------SCC--G----GGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBC---CHHHHHHH
T ss_pred CC--------------CCC--C----CCCCcEEEecCcccCCCCCc-eEEEEcchhhhhccccCcchhh---HHHHHhhh
Confidence 00 000 0 11469999999999999998 999998752100000 000000 00000000
Q ss_pred c-ccccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 411 R-HWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 411 ~-~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
. ..+..++-... ..++..+++.....++.++.++..++++++.+.|.+. +++++.
T Consensus 294 ~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 350 (483)
T 1rv3_A 294 AVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVT 350 (483)
T ss_dssp HHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGG
T ss_pred hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEecc
Confidence 0 00113333332 3456678888777899999999999999999999886 788774
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-12 Score=144.86 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=111.7
Q ss_pred HHHHHHHHHhhccCCcc----ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH
Q psy852 446 CELAKLFEGKVRRDPRF----EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK 521 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~----eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K 521 (891)
.++.+++++.+...+.. .++ +++|+||+|+.++.++|..+.++.+. .|....++.|++|. +|+++.+
T Consensus 84 ~~~~~~la~l~g~~~~~~~~~~~~--~t~ggtea~~~al~a~~~~~~~~~~~------~G~~~~~~~vi~~~-~h~~~~~ 154 (452)
T 2dgk_A 84 LRCVNMVADLWHAPAPKNGQAVGT--NTIGSSEACMLGGMAMKWRWRKRMEA------AGKPTDKPNLVCGP-VQICWHK 154 (452)
T ss_dssp HHHHHHHHHHTTCCCCTTSCCEEE--EESSHHHHHHHHHHHHHHHHHHHHHH------TTCCCSCCEEEESS-CCHHHHH
T ss_pred HHHHHHHHHHhCCCcccccCCceE--EeCCHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCcEEEECC-CcHHHHH
Confidence 34555666666543332 244 78999999999999998866543221 22211245788899 9999999
Q ss_pred HHHHcCceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhhh-----------h
Q psy852 522 AAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYRK-----------S 576 (891)
Q Consensus 522 aa~l~gv~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~~-----------l 576 (891)
++.+.|++++.||+++ +++||+++|+++|+++ +.+|+.+.|++. |+++ +
T Consensus 155 ~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~v 228 (452)
T 2dgk_A 155 FARYWDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 228 (452)
T ss_dssp HHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHcCceEEEEecCCCCCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEE
Confidence 9999999999999987 7999999999999763 567777776654 4331 1
Q ss_pred cC-------------------CCCccEEEEcCcccCCcccccEEEEEeCCccc
Q psy852 577 QG-------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610 (891)
Q Consensus 577 dG-------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L 610 (891)
|+ ++++||+++|+|||+++|.+||++++|++..+
T Consensus 229 D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~ 281 (452)
T 2dgk_A 229 DAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEAL 281 (452)
T ss_dssp ECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGS
T ss_pred EcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHH
Confidence 11 34799999999999999999999999987544
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-11 Score=136.00 Aligned_cols=275 Identities=10% Similarity=0.083 Sum_probs=153.2
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH-
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM- 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l- 525 (891)
++.+.+++.+...+. +++ +++|+++++..++.+......+. +++.|+++..+|++...++..
T Consensus 67 ~l~~~la~~~~~~~~-~v~--~~~g~t~al~~~~~~l~~~~~~~--------------gd~~Vl~~~~~~~~~~~~~~~~ 129 (400)
T 3vax_A 67 RAREYLASTVSAEPD-ELI--FTSGATESNNIALLGLAPYGERT--------------GRRHIITSAIEHKAVLEPLEHL 129 (400)
T ss_dssp HHHHHHHHHTTCCGG-GEE--EESCHHHHHHHHHHTTHHHHHHH--------------TCCEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-cEE--EeCCHHHHHHHHHHHHHHhhccC--------------CCCEEEECccccHhHHHHHHHH
Confidence 344566666665433 455 68899999999988775322111 111588899999998887764
Q ss_pred --cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCCC-------
Q psy852 526 --AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGIE------- 580 (891)
Q Consensus 526 --~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi~------- 580 (891)
.|.+++.+|.++++.+|+++|+++|++.++ .++++. ..|+.. |.++ +|++.
T Consensus 130 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~----~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~ 205 (400)
T 3vax_A 130 AGRGFEVDFLTPGPSGRISVEGVMERLRPDTL----LVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPG 205 (400)
T ss_dssp HTTTCEEEEECCCTTCCCCHHHHHTTCCTTEE----EEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGG
T ss_pred HhcCCeEEEEccCCCCCcCHHHHHHhcCCCce----EEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCc
Confidence 488999999999999999999999875321 122221 245443 4331 22211
Q ss_pred ---C-ccEEEEcCcccCCcccccEEEE-EeCCccchhhhccCCCccccCCCCCccccCCccccccccc-chHHHHHHHHH
Q psy852 581 ---Y-ADSFNVNVNKWLLTAFDSSCLW-VADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR-SLKLWFVIRTY 654 (891)
Q Consensus 581 ---~-aDSIs~d~HK~L~~P~g~G~ll-vR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~-aL~lW~~L~~l 654 (891)
. +|.++.++||+ ++|.|+|+++ ++++..........+ ++..... . ..+. .++-... ...+-.+++.
T Consensus 206 ~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~-~~~~~~~-~---~~~~-~~~~~~~~~~a~~~al~~- 277 (400)
T 3vax_A 206 DLTTPIDMISISGHKI-GAPKGVGALVTRRREEMDDERVPLEP-IMFGGGQ-E---RKLR-PGTLPVPLIMGLAEAAKI- 277 (400)
T ss_dssp GGGSCCSEEEEETGGG-TSCSSCEEEEECBCSSSTTCBCCCCC-SSCSSCT-G---GGTS-CSCCCHHHHHHHHHHHHH-
T ss_pred ChhhcCcEEEEeHHHh-CCCCceEEEEEecchhccccccccCc-eecCCCc-e---eeee-cCCCCHHHHHHHHHHHHH-
Confidence 1 89999999995 5688999999 988432210000001 1100000 0 0000 0011111 1122233332
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ- 730 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~- 730 (891)
..+++++..++..++++++.+.|+ .+++++..++. .++++|++.+. ....+.+.|. .|+.+..+..+
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~-~gi~v~~g~~~~ 348 (400)
T 3vax_A 278 FEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDV-------DAEAFLVTLK-DLVAVATGSAST 348 (400)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHH-HHHHHTTTTEEE
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHHh-cCcEEEeccccc
Confidence 245788999999999999999999 89999886654 36889988643 2345666666 55532111100
Q ss_pred ------------------cCCeEE-EEe-cCCCCHHHHHHHHHHHHHHH
Q psy852 731 ------------------EQNDEV-FEL-QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ------------------~g~~~l-~sv-~~~tT~edId~li~~L~ei~ 759 (891)
.....+ +++ +..+|++|++++++.|+++.
T Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~ 397 (400)
T 3vax_A 349 SASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLK 397 (400)
T ss_dssp EEEECCHHHHHTTTCCHHHHTSEEEEEEEEC------------------
T ss_pred CCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence 013567 999 99999999999999998765
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-11 Score=133.24 Aligned_cols=278 Identities=9% Similarity=0.070 Sum_probs=173.7
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+.. + +++ +++|+++++..++.+++.. . .+.-.|+++..+|++...++...
T Consensus 36 ~l~~~la~~~~~-~--~v~--~~~ggt~al~~~~~~~~~~----~------------~~gd~Vl~~~~~~~~~~~~~~~~ 94 (375)
T 2fnu_A 36 LFEEALCEFLGV-K--HAL--VFNSATSALLTLYRNFSEF----S------------ADRNEIITTPISFVATANMLLES 94 (375)
T ss_dssp HHHHHHHHHHTC-S--EEE--EESCHHHHHHHHHHHSSCC----C------------TTSCEEEECSSSCTHHHHHHHHT
T ss_pred HHHHHHHHHhCC-C--eEE--EeCCHHHHHHHHHHHhccc----C------------CCCCEEEECCCccHhHHHHHHHC
Confidence 344455555543 2 455 6889999999888776310 0 11235888999999999999888
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcC---------------
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQG--------------- 578 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldG--------------- 578 (891)
|.+++.+|.++++.+|+++|+++|++++ ..++++...|... |+++ +|+
T Consensus 95 g~~~~~~~~~~~~~~d~~~l~~~i~~~~----~~v~~~~~tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~ 170 (375)
T 2fnu_A 95 GYTPVFAGIKNDGNIDELALEKLINERT----KAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGG 170 (375)
T ss_dssp TCEEEECCBCTTSSBCGGGSGGGCCTTE----EEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTS
T ss_pred CCEEEEeccCCCCCCCHHHHHhhcCcCc----eEEEEeCCcCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccc
Confidence 9999999999888999999999886532 1233344455543 4331 111
Q ss_pred CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 579 IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 579 i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
...++..++++||+++ | |+|.+++++...+.+.+. ........ . ..+.+.. . ..+.++....+..++.....+
T Consensus 171 ~~~i~~~s~s~~K~~~-~-g~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~-~-~~~~~~~~~~~~~a~~~~~~~ 244 (375)
T 2fnu_A 171 FALASVFSFHAIKPIT-T-AEGGAVVTNDSELHEKMKLFRSHGMLK-K-DFFEGEV-K-SIGHNFRLNEIQSALGLSQLK 244 (375)
T ss_dssp SSSEEEEECCTTSSSC-C-SSCEEEEESCHHHHHHHHHHTBTTEEE-S-SSSCEEE-S-SCCCBCCCCHHHHHHHHHHHT
T ss_pred cCCeEEEeCCCCCCcc-c-cCceEEEeCCHHHHHHHHHHHhcCCcc-c-ccccccc-c-cccccCCCCHHHHHHHHHHHH
Confidence 1236778899999984 6 899999964322222121 11000000 0 0000000 0 001112223333444445567
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----ceeEEEEEecCCcchhhhh-hHHHHHHHHHhCCcEEEeecc--
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----RLGLVCFRLRSENNLIADQ-NNRKLLEDINASGRLHMVPAS-- 729 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----~~~iV~Fr~~~~~~~~~d~-ln~~L~~~L~~~G~~~~s~s~-- 729 (891)
++.+..++..++++++.+.|++++++++..++ ...++.+++.+. .. ....+.+.|.+.|+.....+.
T Consensus 245 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~gi~v~~~~~p~ 319 (375)
T 2fnu_A 245 KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK-----FFTCKKLILESLHKRGILAQVHYKPI 319 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG-----GGGGHHHHHHHHHHTTEECBCCCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc-----ccchHHHHHHHHHHCCCCcccccccc
Confidence 88999999999999999999999899886541 223455666431 11 356788899888987442110
Q ss_pred -----c--------------cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 730 -----Q--------------EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 730 -----~--------------~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
. .....+ ++++.++|++||++++++|+++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 370 (375)
T 2fnu_A 320 YQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE 370 (375)
T ss_dssp GGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 0 012467 999999999999999999998764
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-10 Score=132.89 Aligned_cols=228 Identities=12% Similarity=0.051 Sum_probs=147.5
Q ss_pred EEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe--cCCccc--------hh
Q psy852 508 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST--TLGTTS--------CY 573 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva--taGTT~--------c~ 573 (891)
.|+++..+|++...++ ...|++++.+|+ ++|.+|+++ |+++ ...++++. ..|... |+
T Consensus 152 ~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~~~----t~~v~i~~pn~tG~~~~l~~i~~la~ 222 (438)
T 1wyu_A 152 GVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VGEE----VGAVVVQNPNFLGALEDLGPFAEAAH 222 (438)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CCTT----EEEEEEESSCTTSBCCCHHHHHHHHH
T ss_pred EEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hCCC----eEEEEEECCCCCeEEecHHHHHHHHH
Confidence 5889999999988665 347899999998 568888776 4332 12233333 334433 43
Q ss_pred h-----h--hcCC----------CCccEEEEcCcc-----cCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccc
Q psy852 574 R-----K--SQGI----------EYADSFNVNVNK-----WLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDY 631 (891)
Q Consensus 574 ~-----~--ldGi----------~~aDSIs~d~HK-----~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~ 631 (891)
+ + +|+. .++|.+++|.|| |+++| ++|+++++++ +.+.+ +.++..........
T Consensus 223 ~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~--~~~~l---~~~~~g~~~~~~~~ 296 (438)
T 1wyu_A 223 GAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA--FVRQL---PGRLVSETVDVEGR 296 (438)
T ss_dssp HTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG--GGGGC---CSCCEEEEEBTTSC
T ss_pred HcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHH--HHHhC---CCceeccccccCCC
Confidence 3 2 2321 247999999888 78889 9999999865 22222 11110000000000
Q ss_pred cCCcc------------ccccc------ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-Ccee
Q psy852 632 RHWGI------------PLSRR------FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLG 692 (891)
Q Consensus 632 ~~~ti------------~~SRr------~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~ 692 (891)
..+.+ ..+.. .-++..|..+..+|.+|++++.++..++++++.+.|+++++++++.+ +..+
T Consensus 297 ~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~ 376 (438)
T 1wyu_A 297 RGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFN 376 (438)
T ss_dssp EEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCS
T ss_pred cceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEE
Confidence 00000 00001 11233344488889999999999999999999999999999999875 4566
Q ss_pred EEEEEecCCcchhhhhhHHHHHHHHHhCCcEE-EeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 693 LVCFRLRSENNLIADQNNRKLLEDINASGRLH-MVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 693 iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~-~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
+++|++. . ...++.++|.++|+.. ..+....+...+ ++++.++|++||++++++|+++
T Consensus 377 ~~~~~~~-~-------~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 377 EFALALP-K-------DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEV 436 (438)
T ss_dssp EEEEECS-S-------CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEeCC-C-------CHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHH
Confidence 7777753 1 3567888998899874 122222235567 9999999999999999999865
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-10 Score=124.20 Aligned_cols=271 Identities=11% Similarity=0.097 Sum_probs=172.8
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH--
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-- 523 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-- 523 (891)
.++.+.+++.+...+. +++ +++|+++++..++.+++.... .+.-.|+++..+|++...++
T Consensus 47 ~~l~~~la~~~g~~~~-~v~--~~~g~t~a~~~~~~~~~~~~~---------------~~gd~vl~~~~~~~~~~~~~~~ 108 (384)
T 1eg5_A 47 EKAREKVAKVLGVSPS-EIF--FTSCATESINWILKTVAETFE---------------KRKRTIITTPIEHKAVLETMKY 108 (384)
T ss_dssp HHHHHHHHHHHTSCGG-GEE--EESCHHHHHHHHHHHHHHHTT---------------TTCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC-eEE--EECCHHHHHHHHHHhhhhhcc---------------CCCCEEEECCCCchHHHHHHHH
Confidence 3444455555553333 455 678999999999888764210 01235888888999887766
Q ss_pred -HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-------hcC------
Q psy852 524 -MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-------SQG------ 578 (891)
Q Consensus 524 -~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-------ldG------ 578 (891)
...|.+++.+|.++++.+|+++|+++|++.+ ..++++. ..|... |.++ +|.
T Consensus 109 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~----~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~ 184 (384)
T 1eg5_A 109 LSMKGFKVKYVPVDSRGVVKLEELEKLVDEDT----FLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGK 184 (384)
T ss_dssp HHHTTCEEEECCBCTTSCBCHHHHHHHCCTTE----EEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTT
T ss_pred HHhcCCEEEEEccCCCCccCHHHHHHHhCCCC----eEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCC
Confidence 4568899999999999999999999997531 1222222 134443 4331 121
Q ss_pred ----CC--CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHH
Q psy852 579 ----IE--YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVI 651 (891)
Q Consensus 579 ----i~--~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L 651 (891)
+. .+|.+++++||++ +|.|+|+++++++..+.+.+. ...... .. ..++-. .....++.++
T Consensus 185 ~~~~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~~~~~~~~------~~~~~~-----~~-~~~~~~~~~~~a~~~al 251 (384)
T 1eg5_A 185 IPFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGVPIRPLIH------GGGQER-----GL-RSGTQNVPGIVGAARAM 251 (384)
T ss_dssp SCCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTSCCCCSBC------SSCTTT-----TT-BCSCCCHHHHHHHHHHH
T ss_pred cccCchhcCCCEEEecHHHhc-CCCceEEEEEcCCCccccccc------cCcccc-----cc-cCCCCChHHHHHHHHHH
Confidence 11 4799999999985 576799999987631111110 000000 00 001111 1122334455
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC---ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 652 RTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV---RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 652 ~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
+. ..+.+.+..++..++++++.+.|++ ++++++.++ ..+.++|.+.+. ....+.+.|.+.|+.+..+.
T Consensus 252 ~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g~ 322 (384)
T 1eg5_A 252 EI-AVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPNI-------RGSTLQNLLSGYGIYVSTSS 322 (384)
T ss_dssp HH-HHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHHHTTEECBC--
T ss_pred HH-HHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHHhhCCeEEeccc
Confidence 44 2457888899999999999999988 788887654 246888888632 34678888888898754432
Q ss_pred ccc-------------------CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 729 SQE-------------------QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 729 ~~~-------------------g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+. +...+ ++++..+|++|++++++.|+++++
T Consensus 323 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 374 (384)
T 1eg5_A 323 ACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (384)
T ss_dssp ----------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 111 13567 999988999999999999998863
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.6e-11 Score=130.00 Aligned_cols=266 Identities=11% Similarity=0.012 Sum_probs=165.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEe-cccchHHHHHHHHHcCceEEEecC-CCCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYC-SKEAHSCVEKAAMMAFVRLKILEP-DDKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~-S~~aH~Sv~Kaa~l~gv~v~~Vp~-d~~G~ 540 (891)
+++ +++|+++++..++.+....+ . .++-+++. +...|.++.+++...|.+++.+|. +.++.
T Consensus 61 ~v~--~~~g~t~al~~~~~~~~~~~----~-----------~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 123 (385)
T 2bkw_A 61 PFV--LAGSGTLGWDIFASNFILSK----A-----------PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGES 123 (385)
T ss_dssp EEE--EESCTTHHHHHHHHHHSCTT----C-----------SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSC
T ss_pred eEE--EcCchHHHHHHHHHHHhccC----C-----------CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCC
Confidence 455 78899999998887652100 0 11233444 455666766677778899999999 88999
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-------hcC----------CC--CccEEEEcCc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-------SQG----------IE--YADSFNVNVN 590 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-------ldG----------i~--~aDSIs~d~H 590 (891)
+|+++|+++|++. ....++++ +..|+.. |+++ +|+ +. .+|.+++++|
T Consensus 124 ~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~ 200 (385)
T 2bkw_A 124 VPLELITEKLSQN---SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQ 200 (385)
T ss_dssp CCHHHHHHHHHHS---CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESS
T ss_pred CCHHHHHHHHhcC---CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCc
Confidence 9999999999862 11122222 2345543 4443 222 11 4799999999
Q ss_pred ccCCcccccEEEEEeCCccchhhhc-----cCCCccccCCCCCccccCCc----c-ccccc-ccchHHHHHHHHHHHhhH
Q psy852 591 KWLLTAFDSSCLWVADRYKLTSALV-----VDPLYLQHGHEGAIDYRHWG----I-PLSRR-FRSLKLWFVIRTYGLSGL 659 (891)
Q Consensus 591 K~L~~P~g~G~llvR~~~~L~~~l~-----~~~~Yl~~~~e~~~~~~~~t----i-~~SRr-~~aL~lW~~L~~lG~~G~ 659 (891)
||+++|.|+|+++++++. +.+.+. ....|.............+. . .++-. ...+.+..+++.+...++
T Consensus 201 K~~~~~~G~G~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 279 (385)
T 2bkw_A 201 KAIGAPAGLSISLCSSRF-MDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGL 279 (385)
T ss_dssp STTCCCSCEEEEEECHHH-HHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred cccccCCcceEEEEcHHH-HHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccH
Confidence 999999999999987652 220111 00011000000000000000 0 01111 122345566666666678
Q ss_pred HHHHHHHHHHHHHHHHHh-ccCCCcEEeCC-----CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-cC
Q psy852 660 QKYIRRHCELAKLFEGKV-RRDPRFEISND-----VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ-EQ 732 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L-~~~~~~eil~~-----~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~-~g 732 (891)
.+..++..++++++.+.| ++. +++++.+ ...++++|++.+ .+++.+.|.+.|+.+..+... .+
T Consensus 280 ~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~ 349 (385)
T 2bkw_A 280 HKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD---------PPDVIAFLKSHGVVIAGGIHKDIG 349 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC---------HHHHHHHHHHTTEECBCCCCTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC---------HHHHHHHHHHCCeEEeCCCCcccC
Confidence 889999999999999999 887 7888752 136788898842 467888888889774433321 13
Q ss_pred CeEE-EE-ecC---CCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FE-LQE---RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l-~s-v~~---~tT~edId~li~~L~ei~ 759 (891)
...+ ++ +.. .+|++|++++++.|+++.
T Consensus 350 ~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~ 381 (385)
T 2bkw_A 350 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLAL 381 (385)
T ss_dssp GGEEEECCCGGGTSSTTCTHHHHHHHHHHHHT
T ss_pred CCEEEEEccccccccCCHHHHHHHHHHHHHHH
Confidence 4566 88 552 479999999999998765
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.6e-11 Score=130.45 Aligned_cols=278 Identities=12% Similarity=0.077 Sum_probs=168.9
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa~ 524 (891)
++.+.+++.+...+..+++. +++|+++++..++.+... . ++- |+++...+++ ....+.
T Consensus 56 ~~~~~la~~~g~~~~~~~i~-~~~ggt~al~~~~~~~~~----~--------------gd~-vi~~~~~~~~~~~~~~~~ 115 (376)
T 3f0h_A 56 ENEKFMLEYAKAPEGSKAVF-MTCSSTGSMEAVVMNCFT----K--------------KDK-VLVIDGGSFGHRFVQLCE 115 (376)
T ss_dssp HHHHHHHHHHTCCTTCEEEE-ESSCHHHHHHHHHHHHCC----T--------------TCC-EEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCceEEE-EcCChhHHHHHHHHhccC----C--------------CCe-EEEEeCChhhHHHHHHHH
Confidence 34455666665433334441 477889999888765421 0 122 4444333333 223455
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC---------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI--------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi--------- 579 (891)
..|.+++.+|.+.++.+|+++|++++++++ ..++++ +..|... |.++ +|++
T Consensus 116 ~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~----~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~ 191 (376)
T 3f0h_A 116 IHEIPYVALKLEHGKKLTKEKLYEYDNQNF----TGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFN 191 (376)
T ss_dssp HTTCCEEEEECCTTCCCCHHHHHTTTTSCC----CEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCC
T ss_pred HcCCceEEEeCCCCCCCCHHHHHHhhccCc----eEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccc
Confidence 678899999999999999999998765432 123332 3456554 5442 3321
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc--CCC-ccccCCCCCccccCCcccccccc-cchHHHHHHH
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV--DPL-YLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIR 652 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~--~~~-Yl~~~~e~~~~~~~~ti~~SRr~-~aL~lW~~L~ 652 (891)
..+|.+++++||++++|.|+|+++++++. + +.+.. ... |+...... ......+...+-.. ....+..+++
T Consensus 192 ~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~al~ 268 (376)
T 3f0h_A 192 MNECGADVMITGSQKVLACPPGISVIVLAPRG-V-ERVEKSKVRTMYFDLKDAL-KNQERGQTPFTPAVGILLQINERLK 268 (376)
T ss_dssp HHHHTCSEEEEETTTTTCCCSSCEEEEECHHH-H-HHHHTCCCCCSTTCHHHHH-HHHTTTCCSSCCCHHHHHHHHHHHH
T ss_pred ccccCccEEEecCcccccCCCceEEEEECHHH-H-HHhhcCCCCceeecHHHHH-hhcccCCCCCCCcHHHHHHHHHHHH
Confidence 12799999999999999999998887652 2 11211 111 11100000 00000000001111 1134566677
Q ss_pred HHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-eeEEEEEecCCcchhhhhhHHHHHHHHHhC-CcEEEeecc
Q psy852 653 TYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-LGLVCFRLRSENNLIADQNNRKLLEDINAS-GRLHMVPAS 729 (891)
Q Consensus 653 ~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~s~ 729 (891)
.+... ++++..++..++++++.+.|++. ++++..+.. ..++.|...+. ...++.+.|.++ |+.+..+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~~~gi~v~~g~~ 340 (376)
T 3f0h_A 269 EIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHPTTA-------NAYDIFLKLKDEYGIWICPNGG 340 (376)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEESSS-------CHHHHHHHHHHHSSEECEECCG
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeCCCC-------CHHHHHHHHHHhCCEEEecCcc
Confidence 66666 78999999999999999999986 577765433 34555554322 456788899887 887555433
Q ss_pred ccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 730 QEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 730 ~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+..++ ++++..+|++|++++++.|++++
T Consensus 341 ~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l 371 (376)
T 3f0h_A 341 EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQ 371 (376)
T ss_dssp GGTTTCEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 3344566 99999999999999999999876
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-11 Score=131.71 Aligned_cols=258 Identities=12% Similarity=0.090 Sum_probs=165.4
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH--HH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA--AM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka--a~ 524 (891)
++.+++++.+.. .-+++ +++||++++..++.+++. +.-.|+++...|++...+ +.
T Consensus 47 ~l~~~la~~~g~--~~~v~--~~~~gt~a~~~al~~~~~-------------------~gd~vi~~~~~~~~~~~~~~~~ 103 (356)
T 1v72_A 47 QVKRKFCEIFER--DVEVF--LVPTGTAANALCLSAMTP-------------------PWGNIYCHPASHINNDECGAPE 103 (356)
T ss_dssp HHHHHHHHHHTS--CCEEE--EESCHHHHHHHHHHTSCC-------------------TTEEEEECTTSHHHHSSTTHHH
T ss_pred HHHHHHHHHhCC--CCcEE--EeCCccHHHHHHHHHhcC-------------------CCCEEEEcCccchhhhhchHHH
Confidence 344455555552 22455 678999999888776432 123578888899998776 66
Q ss_pred Hc--CceEEEecCCCCCCcCHHHHHH-HHHhhh-hcCCcc--EEEEe--cCCccc-----------hhhh-----hc---
Q psy852 525 MA--FVRLKILEPDDKNSLRGATLRQ-VMQQDE-TMGYIP--FFVST--TLGTTS-----------CYRK-----SQ--- 577 (891)
Q Consensus 525 l~--gv~v~~Vp~d~~G~mD~~~Le~-aI~~d~-~~g~ip--~~Vva--taGTT~-----------c~~~-----ld--- 577 (891)
.. |.+++.+|.+ ++.+|+++|++ +|++.. ..+..+ ++++. +.|.+. |.++ +|
T Consensus 104 ~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~ 182 (356)
T 1v72_A 104 FFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSR 182 (356)
T ss_dssp HHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEchh
Confidence 55 8899999986 58999999999 887521 111122 22332 245522 3321 11
Q ss_pred --------C-----C---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc
Q psy852 578 --------G-----I---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR 641 (891)
Q Consensus 578 --------G-----i---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr 641 (891)
| + ..+|.+++++||+ +.|.|+|+++.+ ++.+.. +. ++... .+ ++. +
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~-~~~~~~-~~----~~~~~-------~~-~~~-~-- 244 (356)
T 1v72_A 183 FANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFN-TSLATE-MS----YRRKR-------AG-HLS-S-- 244 (356)
T ss_dssp HHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESS-GGGHHH-HH----HHHHH-------TT-CCC-S--
T ss_pred hHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEEC-HHHHhh-HH----HHhhc-------cC-chh-h--
Confidence 1 1 2689999999999 669988888774 333221 11 01000 00 000 0
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 642 FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
...+.+...++.+....+.+.+++..++++++.+.|++++++++..++..+.+++++. ..+.+.|.++|
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~g 313 (356)
T 1v72_A 245 KMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD-----------SAMIDALLKAG 313 (356)
T ss_dssp STHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-----------HHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC-----------HHHHHHHHhcC
Confidence 0011222233444334566778888999999999999988999887777788888873 25778888889
Q ss_pred cEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 722 ~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.+..+. .. ...+ ++++..+|++|++++++.|++++
T Consensus 314 i~v~~g~-~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~l 350 (356)
T 1v72_A 314 FGFYHDR-WG-PNVVRFVTSFATTAEDVDHLLNQVRLAA 350 (356)
T ss_dssp CBCBCSS-SS-TTEEEEECCTTCCHHHHHHHHHHHHHTC
T ss_pred eEEeccc-cC-CCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 8754333 22 4566 99888999999999999998765
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-10 Score=129.35 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSL 109 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~ 109 (891)
.+.+...+...+-+ ....|...+...+++..+.+++++.+|++.+. +.+ .++
T Consensus 45 ~~~v~~a~~~~~~~-~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-------------~~v--------------~~~ 96 (388)
T 1j32_A 45 PKHIVEAAKAALEQ-GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA-------------DNI--------------LVT 96 (388)
T ss_dssp CHHHHHHHHHHHHT-TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-------------GGE--------------EEE
T ss_pred CHHHHHHHHHHHhc-CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh-------------hhE--------------EEc
Confidence 35554444433322 22223333446799999999999999975321 001 135
Q ss_pred cchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHH
Q psy852 110 GGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQ 187 (891)
Q Consensus 110 ~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~ 187 (891)
+||+......+..+ . . +...|+++..+|+++..++...|.+++.|+.++ ++.+|+++|++.++
T Consensus 97 ~g~~~a~~~~~~~~-~-~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 161 (388)
T 1j32_A 97 NGGKQSIFNLMLAM-I-E-------------PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT 161 (388)
T ss_dssp SHHHHHHHHHHHHH-C-C-------------TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC
T ss_pred CCHHHHHHHHHHHh-c-C-------------CCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcC
Confidence 67764333222222 1 1 112477888899999988887788999999885 57899999999886
Q ss_pred hhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 188 QDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 188 ~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+. +.+|+++..+|.+|.+ +++++|+++|+++|+++++|.+|+++.
T Consensus 162 ~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 209 (388)
T 1j32_A 162 PK------TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKIL 209 (388)
T ss_dssp TT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred cC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence 53 3466777789999999 559999999999999999999997643
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-09 Score=122.71 Aligned_cols=88 Identities=13% Similarity=0.017 Sum_probs=74.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++...|.++..++...+.+++.++ .+|+++|++.+++... ..+.+|+++..+|.+|.+.|+++|+++|++
T Consensus 150 ~vl~~~~~h~~~~~~~~~~g~~~~~~~-----~~d~~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~ 222 (427)
T 2w8t_A 150 YVILDADSHASIYDGCQQGNAEIVRFR-----HNSVEDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222 (427)
T ss_dssp EEEEETTCCHHHHHHHHHSCSEEEEEC-----TTCHHHHHHHHHTSCS--SSCEEEEEESEETTTTEECCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHcCCeeEEeC-----CCCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHHHH
Confidence 478889999999999988888888887 3699999999976321 135688888888999999999999999999
Q ss_pred cCCceeeeccccCCc
Q psy852 224 FDVWLHVDGAYAGSS 238 (891)
Q Consensus 224 ~~~~lHvDaA~GG~~ 238 (891)
+|+++++|.|++++.
T Consensus 223 ~g~~li~Dea~~~~~ 237 (427)
T 2w8t_A 223 HGAMVLVDEAHSMGF 237 (427)
T ss_dssp TTCEEEEECTTTTTT
T ss_pred cCCEEEEECCccccc
Confidence 999999999996643
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-11 Score=133.49 Aligned_cols=272 Identities=11% Similarity=0.054 Sum_probs=166.3
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH-
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM- 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l- 525 (891)
++.+.+++.+...+. +++ +++|+++++..++.+.+... .+...|+++..+|.+...++..
T Consensus 73 ~l~~~la~~~g~~~~-~v~--~~~g~t~al~~~~~~l~~~~----------------~~gd~vi~~~~~~~~~~~~~~~~ 133 (406)
T 3cai_A 73 AAREAVADLVNADPG-GVV--LGADRAVLLSLLAEASSSRA----------------GLGYEVIVSRLDDEANIAPWLRA 133 (406)
T ss_dssp HHHHHHHHHHTCCGG-GEE--EESCHHHHHHHHHHHTGGGG----------------BTTCEEEEETTSCGGGTHHHHHH
T ss_pred HHHHHHHHHhCCCCC-eEE--EeCChHHHHHHHHHHHhhcc----------------CCCCEEEEcCCccHHHHHHHHHH
Confidence 344455666654333 555 68899988877665431100 1223588888899887666543
Q ss_pred ---cCceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCC------
Q psy852 526 ---AFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGI------ 579 (891)
Q Consensus 526 ---~gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi------ 579 (891)
.|.+++.+|.+ ++|.+|+++|+++|++++ ..++++. ..|+.. |.++ +|++
T Consensus 134 ~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~----~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~ 209 (406)
T 3cai_A 134 AHRYGAKVKWAEVDIETGELPTWQWESLISKST----RLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYR 209 (406)
T ss_dssp HHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTE----EEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTC
T ss_pred HHhcCCeEEEEecCcccCCcCHHHHHHHhCCCc----eEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC
Confidence 58899999998 789999999999997532 1222322 234443 4431 2221
Q ss_pred ------CCccEEEEcCcccCCcccccE-EEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccc-hHHHHHH
Q psy852 580 ------EYADSFNVNVNKWLLTAFDSS-CLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRS-LKLWFVI 651 (891)
Q Consensus 580 ------~~aDSIs~d~HK~L~~P~g~G-~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~a-L~lW~~L 651 (891)
..+|.+++++|||++ |. +| +++++++ +.+.+.....+.... ....+. .++-...+ ..+-.++
T Consensus 210 ~~~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~--~~~~l~~~~~~~~~~-----~~~~~~-~~t~~~~~~~a~~~al 279 (406)
T 3cai_A 210 LLDIRETDADVVTVNAHAWGG-PP-IGAMVFRDPS--VMNSFGSVSTNPYAT-----GPARLE-IGVHQFGLLAGVVASI 279 (406)
T ss_dssp CCCHHHHCCSEEEEEGGGGTS-CS-CEEEEESCHH--HHHTSCCCCSCTTCC-----GGGGGC-CSCCCHHHHHHHHHHH
T ss_pred CCCchhcCCCEEEeehhhhcC-CC-cCeEEEEehH--HHhhcCCcccCCCCC-----cccccc-CCCccHHHHHHHHHHH
Confidence 137999999999876 75 88 7777653 222221110010000 000000 01111111 1223344
Q ss_pred HHHHHh--------------hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--ceeEEEEEecCCcchhhhhhHHHHHH
Q psy852 652 RTYGLS--------------GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--RLGLVCFRLRSENNLIADQNNRKLLE 715 (891)
Q Consensus 652 ~~lG~~--------------G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~ 715 (891)
+.+... .+++..++..++++++.+.|++.+++++..+. ..++++|++.+. ...++.+
T Consensus 280 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 352 (406)
T 3cai_A 280 EYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKV-------PADRVVQ 352 (406)
T ss_dssp HHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTB-------CHHHHHH
T ss_pred HHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCc-------CHHHHHH
Confidence 443322 47788888899999999999998899887653 466899998632 3567888
Q ss_pred HHHhCCcEEEeec------c--c-cCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 716 DINASGRLHMVPA------S--Q-EQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 716 ~L~~~G~~~~s~s------~--~-~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.|.+.|+....+. . . .+...+ ++++..+|++||+++++.|+++
T Consensus 353 ~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 353 RLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp HHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred HHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 8888898755443 1 1 123556 9999999999999999998753
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-10 Score=127.81 Aligned_cols=160 Identities=12% Similarity=-0.001 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..|.+...+...+-+ ....+. +...+++..+.+++++.+|++... +.+ .+
T Consensus 41 ~~~~v~~a~~~~~~~-~~~~y~--~~~~~l~~~la~~l~~~~g~~~~~-------------~~i--------------~~ 90 (391)
T 3dzz_A 41 IAPEIMASMEEKLKV-AAFGYE--SVPAEYYKAVADWEEIEHRARPKE-------------DWC--------------VF 90 (391)
T ss_dssp CCHHHHHHHHHHHTT-CCCCCB--CCCHHHHHHHHHHHHHHHSCCCCG-------------GGE--------------EE
T ss_pred CCHHHHHHHHHHHhc-CcCCCC--CCCHHHHHHHHHHHHHHhCCCCCH-------------HHE--------------EE
Confidence 446666655554433 222222 225789999999999999965331 111 14
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC-CC--CcccHHHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DK--NSLRGATLRQV 185 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~--g~id~~~L~~~ 185 (891)
++||+...++.+..+ .. +...|+++..+|.++..++...+.+++.++.+ ++ +.+|+++|+++
T Consensus 91 ~~g~~~a~~~~~~~l--~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~ 155 (391)
T 3dzz_A 91 ASGVVPAISAMVRQF--TS-------------PGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEK 155 (391)
T ss_dssp ESCHHHHHHHHHHHH--SC-------------TTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CC-------------CCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHH
Confidence 567764433322222 11 12248888999999999988888899999985 33 34999999999
Q ss_pred HHhhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 186 MQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 186 l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++.. +.+|+++..+|.+|.+ +++++|+++|+++|+++++|.+|+++.
T Consensus 156 l~~~~-----~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 206 (391)
T 3dzz_A 156 LATPS-----VRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLV 206 (391)
T ss_dssp HTSTT-----EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred HhccC-----ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 97321 4567778889999999 899999999999999999999996544
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-10 Score=128.13 Aligned_cols=83 Identities=11% Similarity=0.018 Sum_probs=72.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|+++..++...|.+++.+++|++ +.+|+++|++++++. +.+|+ .++.+|.+.|+++|+++|+
T Consensus 80 ~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~~l~~i~~la~ 150 (388)
T 1b9h_A 80 EVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPR------TKVIM---PVHMAGLMADMDALAKISA 150 (388)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTT------EEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred EEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcC------ceEEE---EeCCccCcCCHHHHHHHHH
Confidence 4888899999999988878889999999875 899999999988643 23444 6888999999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|++||+|+|++
T Consensus 151 ~~~~~li~D~a~~ 163 (388)
T 1b9h_A 151 DTGVPLLQDAAHA 163 (388)
T ss_dssp HHTCCBCEECTTC
T ss_pred HcCCEEEEecchh
Confidence 9999999999994
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=135.71 Aligned_cols=158 Identities=13% Similarity=0.017 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHhcCCCCC-----c-cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy852 29 SYPSVLADMLSDAIGCIGF-----S-WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTP 102 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~-----~-~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~ 102 (891)
..|.++..|...+.|..+. . +...+...++|..+.+++++++|.+..+.. ..
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~-----~~----------------- 123 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWG-----VN----------------- 123 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEE-----EE-----------------
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCc-----eE-----------------
Confidence 4577777777766654421 1 223455579999999999999999864210 00
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChH------HHH--HHHHcCC--eEEEEecC
Q psy852 103 ANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSC------VEK--AAMMAFV--RLKILEPD 172 (891)
Q Consensus 103 ~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~S------v~k--aa~~~~~--~v~~V~~d 172 (891)
.++++|+..++..+..+ -+ +.-.|+++..+|.+ +.. .+.+.+. +++.+++|
T Consensus 124 ----v~~~sGt~An~~al~al--~~-------------pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd 184 (490)
T 2a7v_A 124 ----VQPYSGSPANLAVYTAL--LQ-------------PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN 184 (490)
T ss_dssp ----CCCSSHHHHHHHHHHHH--CC-------------SCEECCC-------------------------------CCBC
T ss_pred ----EeCCchHHHHHHHHHHH--cC-------------CCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccc
Confidence 12357775443333333 11 12235565555543 211 2223333 34455566
Q ss_pred -CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 173 -DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 173 -~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++|.+|+++|++.+.+.. |-+|++ +++..|.+.|+++|+++|+++|+++|+|+|+
T Consensus 185 ~~~~~iD~d~le~~l~~~~-----~klIi~--~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah 240 (490)
T 2a7v_A 185 PKTGLIDYNQLALTARLFR-----PRLIIA--GTSAYARLIDYARMREVCDEVKAHLLADMAH 240 (490)
T ss_dssp TTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHHHHHHTTCEEEEECGG
T ss_pred cccCCcCHHHHHHHHhhcC-----CcEEEE--cCCCCCCcccHHHHHHHHHHcCCEEEEcccc
Confidence 579999999999997542 334443 3455678889999999999999999999987
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.7e-11 Score=132.79 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=71.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.+++++ ++.+|+++|++.+++. +.+|++ ++.+|.+.|+++|.++|+
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~---~~~~G~~~~~~~i~~~~~ 154 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDK------TKAIIP---VHLFGSMANMDEINEIAQ 154 (418)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTT------EEEECC---BCCTTCCCCHHHHHHHHH
T ss_pred EEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCC------CeEEEE---eCCcCCcccHHHHHHHHH
Confidence 488889999999999888888999999986 7899999999888653 234443 457899999999999999
Q ss_pred HcCCceeeeccccC
Q psy852 223 EFDVWLHVDGAYAG 236 (891)
Q Consensus 223 ~~~~~lHvDaA~GG 236 (891)
++|++|++|+|++.
T Consensus 155 ~~~~~li~D~a~~~ 168 (418)
T 2c81_A 155 EHNLFVIEDCAQSH 168 (418)
T ss_dssp HTTCEEEEECTTCT
T ss_pred HCCCEEEEECcccc
Confidence 99999999999954
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-11 Score=130.37 Aligned_cols=83 Identities=6% Similarity=0.087 Sum_probs=72.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|++...++...|.+++.+++++++.+|+++|++.+++. +.+|+ .++.+|.+.|+++|+++|++
T Consensus 80 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~---~~n~~G~~~~~~~i~~~~~~ 150 (374)
T 3uwc_A 80 EVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITDK------TKAIM---PVHYTGNIADMPALAKIAKK 150 (374)
T ss_dssp EEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHH
T ss_pred EEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCC------ceEEE---EeCCcCCcCCHHHHHHHHHH
Confidence 4888899999999998888889999999989999999999988653 23444 67899999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.|++
T Consensus 151 ~~~~li~D~~~~ 162 (374)
T 3uwc_A 151 HNLHIVEDACQT 162 (374)
T ss_dssp TTCEEEEECTTC
T ss_pred cCCEEEEeCCCc
Confidence 999999999884
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-10 Score=129.00 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=67.6
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.++...+. ..+.+++.+++| +++|++.+++. +.+|+++..+|.+|.+.|+++|++
T Consensus 97 ~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~ 164 (412)
T 2cb1_A 97 EVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE------PEAVREALSAK------TRAVFVETVANPALLVPDLEALAT 164 (412)
T ss_dssp EEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS------HHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC------HHHHHHHhccC------CeEEEEeCCCCCCcccccHHHHHH
Confidence 47888899999877653 256788888875 88898888653 457888999999999999999999
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|+++|+++|+|++|++
T Consensus 165 l~~~~~~~li~D~~~~~ 181 (412)
T 2cb1_A 165 LAEEAGVALVVDNTFGA 181 (412)
T ss_dssp HHHHHTCEEEEECGGGT
T ss_pred HHHHcCCEEEEECCCcc
Confidence 99999999999999854
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-10 Score=125.81 Aligned_cols=236 Identities=12% Similarity=0.088 Sum_probs=145.4
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
..+...++|..+.+++++++|.+.... ..++|+ +.+...+... ..
T Consensus 65 ~~~~~~~~~~~~~~~la~~~g~~~~~i------------------------------~~~sGt-~a~~~~~~~~-~~--- 109 (417)
T 3n0l_A 65 GCEFVDEIETLAIERCKKLFNCKFANV------------------------------QPNSGS-QANQGVYAAL-IN--- 109 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEEC------------------------------CCSSHH-HHHHHHHHHH-SC---
T ss_pred cchHHHHHHHHHHHHHHHHhCCCCcce------------------------------EeccHH-HHHHHHHHHh-cC---
Confidence 346678999999999999999865421 123455 4433332222 11
Q ss_pred CCccccccccCCeEEEecCCCChHHHH---HHHH--cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeeccc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVEK---AAMM--AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGT 205 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~k---aa~~--~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gt 205 (891)
+...|+++..+|.+... .+.. .+..++.++++++|.+|+++|++.+++.. |.+|+++.++
T Consensus 110 ----------~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~ 174 (417)
T 3n0l_A 110 ----------PGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEK-----PKLIVCGASA 174 (417)
T ss_dssp ----------TTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHC-----CSEEEECCSS
T ss_pred ----------CCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcC-----CeEEEECCcc
Confidence 12247777888877655 2222 23456777888889999999999998432 3466666666
Q ss_pred CccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHH
Q psy852 206 TSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQA 285 (891)
Q Consensus 206 t~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (891)
+ |.+.|+++|+++|+++|+++++|.|++......
T Consensus 175 ~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-------------------------------------------- 208 (417)
T 3n0l_A 175 Y--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVA-------------------------------------------- 208 (417)
T ss_dssp C--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT--------------------------------------------
T ss_pred c--CccCCHHHHHHHHHHcCCEEEEECccchhhhhc--------------------------------------------
Confidence 4 999999999999999999999999862111000
Q ss_pred HhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEE
Q psy852 286 ISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFN 365 (891)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~ 365 (891)
+.+ + ..+..+|.++
T Consensus 209 -----------------------------------------------------~~~-------~------~~~~~~di~~ 222 (417)
T 3n0l_A 209 -----------------------------------------------------GEH-------P------SPFPYAHVVS 222 (417)
T ss_dssp -----------------------------------------------------TSS-------C------CCTTTCSEEE
T ss_pred -----------------------------------------------------ccC-------C------CccccceEEE
Confidence 000 0 0011368999
Q ss_pred EeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHH
Q psy852 366 VNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRR 444 (891)
Q Consensus 366 ~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~ 444 (891)
.++||++.+|.+ |+++.+++.... .+.. ...+ +..++-.. ...+++.++.....+++.++.++
T Consensus 223 ~s~sK~l~g~~~-G~~~~~~~~~~~-~~~~---~~~~-----------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~ 286 (417)
T 3n0l_A 223 STTHKTLRGPRG-GIIMTNDEELAK-KINS---AIFP-----------GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQ 286 (417)
T ss_dssp EESSTTTCSCSC-EEEEESCHHHHH-HHHH---HHTT-----------TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred eeCccccCCCCe-eEEEECCHHHHH-HHhh---hhCC-----------cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999888874 777776432221 1110 0000 01112122 33456667777667888999999
Q ss_pred HHHHHHHHHHhhccCCccccc
Q psy852 445 HCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv 465 (891)
..++++++.+.|.+ .+++++
T Consensus 287 ~~~~~~~l~~~L~~-~g~~~~ 306 (417)
T 3n0l_A 287 VRTNAQVLANVLMD-RKFKLV 306 (417)
T ss_dssp HHHHHHHHHHHHHH-TTCEEG
T ss_pred HHHHHHHHHHHHHh-CCceec
Confidence 99999999999987 666665
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-10 Score=128.47 Aligned_cols=275 Identities=9% Similarity=-0.020 Sum_probs=161.8
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH--HHHHHHc
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV--EKAAMMA 526 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv--~Kaa~l~ 526 (891)
++.+++.+... . +++ +++|||+++..++... . +.-.|+++..+|++. ...+...
T Consensus 41 ~~~l~~~~~~~-~-~v~--~~~sgt~a~~~~~~~~-----~---------------~gd~vi~~~~~~~~~~~~~~~~~~ 96 (379)
T 3ke3_A 41 LSNLKTVYNAE-A-AVI--IPGSGTYGMEAVARQL-----T---------------IDEDCLIIRNGWFSYRWTQILEKG 96 (379)
T ss_dssp HHHHHHHHTCS-E-EEE--EESCHHHHHHHHHHHH-----C---------------TTCEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-C-EEE--EcCChhHHHHHHHHhC-----C---------------CCCeEEEEeCCchhHHHHHHHHHh
Confidence 34555555443 2 455 6789999988865321 1 111356666666653 2333333
Q ss_pred C--ceEEEecCCCC---------CCcCHHHHHHHHHhhhhcCCccEE--EEecCCccc-----------hhh-----hhc
Q psy852 527 F--VRLKILEPDDK---------NSLRGATLRQVMQQDETMGYIPFF--VSTTLGTTS-----------CYR-----KSQ 577 (891)
Q Consensus 527 g--v~v~~Vp~d~~---------G~mD~~~Le~aI~~d~~~g~ip~~--VvataGTT~-----------c~~-----~ld 577 (891)
| .+++.+|.+.+ +.+|+++|+++|++... ...++ +.+..|... |++ ++|
T Consensus 97 g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~--~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D 174 (379)
T 3ke3_A 97 KFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKS--AIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVID 174 (379)
T ss_dssp CCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTC--SEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCC--cEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3 47888887542 37999999999965311 11111 223356543 333 245
Q ss_pred CCC-----------CccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-C--CCccccCC-C---CCccccCCccccc
Q psy852 578 GIE-----------YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-D--PLYLQHGH-E---GAIDYRHWGIPLS 639 (891)
Q Consensus 578 Gi~-----------~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~--~~Yl~~~~-e---~~~~~~~~ti~~S 639 (891)
++. .+|.+++++|||+++|.|+|+++++++. + +.+.. . ..|+.... . ..+..+.....++
T Consensus 175 ~~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t 252 (379)
T 3ke3_A 175 CIASGCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAA-I-KKVESTESNCFSLDLKQWLTIMRAYENGGHAYHAT 252 (379)
T ss_dssp CTTCTTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHH-H-HHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSC
T ss_pred ecccCCccccccccCCCEEEecchhhcCCCCceEEEEECHHH-H-HhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCC
Confidence 442 5899999999999999999999998652 1 11211 1 11110000 0 0000000000011
Q ss_pred cc-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--cee-EEEEEecCCcchhhhhhHHHHHH
Q psy852 640 RR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--RLG-LVCFRLRSENNLIADQNNRKLLE 715 (891)
Q Consensus 640 Rr-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~~~-iV~Fr~~~~~~~~~d~ln~~L~~ 715 (891)
-. .....+-.+++.+..+|++++.++..+++++|.+.|++. +++++.++ ..+ ++.|...+. .....+
T Consensus 253 ~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~ 323 (379)
T 3ke3_A 253 MPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTERD--------DMHKGS 323 (379)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSCH--------HHHSSH
T ss_pred CCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCCc--------chHHHH
Confidence 11 112234466676777889999999999999999999987 78876554 244 445554211 112256
Q ss_pred HHHhCCcEEEeeccc-----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 716 DINASGRLHMVPASQ-----EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 716 ~L~~~G~~~~s~s~~-----~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.|.+.|+++..+... .+...+ ++++.++|++|||+++++|+++.+
T Consensus 324 ~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~ 374 (379)
T 3ke3_A 324 AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALD 374 (379)
T ss_dssp HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence 778889875443321 124567 999988899999999999998874
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.9e-11 Score=130.36 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=71.6
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|+++..++...|.+++.+++| +++.+|+++|++++++. +.+|+ .++.+|.+.|+++|.++|+
T Consensus 78 ~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~---~~n~~G~~~~l~~i~~l~~ 148 (373)
T 3frk_A 78 EVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEK------TKAII---AVHLYGQPADMDEIKRIAK 148 (373)
T ss_dssp EEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTT------EEEEE---EECCTTCCCCHHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCC------CeEEE---EECCCcCcccHHHHHHHHH
Confidence 48889999999999987778899999998 67899999999988653 23444 5678999999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++++|+|++
T Consensus 149 ~~~~~li~D~a~~ 161 (373)
T 3frk_A 149 KYNLKLIEDAAQA 161 (373)
T ss_dssp HHTCEEEEECTTC
T ss_pred HcCCEEEEECCcc
Confidence 9999999999984
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-09 Score=122.19 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=71.6
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
..|+++..+|.++..++...|.+++.+++|++ +.+|+++|++.+++. +.+|+++ +.+|..+|+++|+++|
T Consensus 81 ~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~---~~~g~~~~~~~i~~l~ 151 (390)
T 3b8x_A 81 DEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDS------TKAILTV---NLLGNPNNFDEINKII 151 (390)
T ss_dssp CEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTT------EEEEEEE---CGGGCCCCHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcC------CeEEEEE---CCccChhhHHHHHHHH
Confidence 35888899999999998878889999999876 999999999988653 2355554 4678899999999999
Q ss_pred HHcCCceeeecccc
Q psy852 222 KEFDVWLHVDGAYA 235 (891)
Q Consensus 222 ~~~~~~lHvDaA~G 235 (891)
+++|+++|+|+|++
T Consensus 152 ~~~~~~li~D~a~~ 165 (390)
T 3b8x_A 152 GGRDIILLEDNCES 165 (390)
T ss_dssp TTSCCEEEEECTTC
T ss_pred HHcCCEEEEECcCc
Confidence 99999999999995
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-10 Score=124.57 Aligned_cols=266 Identities=12% Similarity=0.098 Sum_probs=167.9
Q ss_pred HHHHH-HHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 447 ELAKL-FEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 447 elAr~-l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
++.+. +++.+... .++ +++|+++++..++.++.. +.-.|+++..+|++...++..
T Consensus 57 ~l~~~~la~~~~~~---~v~--~~~g~t~a~~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~ 112 (371)
T 2e7j_A 57 DFIHNQLPKFLGCD---VAR--VTNGAREAKFAVMHSLAK-------------------KDAWVVMDENCHYSSYVAAER 112 (371)
T ss_dssp HHHHTHHHHHTTSS---EEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---EEE--EeCChHHHHHHHHHHHhC-------------------CCCEEEEccCcchHHHHHHHH
Confidence 34445 55555542 566 788999999988877521 123589999999999999988
Q ss_pred cCceEEEec--CCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----CCccc--------hhhh-----hcC-----C--
Q psy852 526 AFVRLKILE--PDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----LGTTS--------CYRK-----SQG-----I-- 579 (891)
Q Consensus 526 ~gv~v~~Vp--~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~--------c~~~-----ldG-----i-- 579 (891)
.|.+++.+| .++++.+|+++|+++|++.......-++++.+ .|... |.++ +|. .
T Consensus 113 ~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~ 192 (371)
T 2e7j_A 113 AGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMP 192 (371)
T ss_dssp TTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBC
T ss_pred cCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCC
Confidence 999999999 88889999999999998643211222222222 34443 4331 221 1
Q ss_pred -----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCcccccccccchHHHHHHHH
Q psy852 580 -----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT 653 (891)
Q Consensus 580 -----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~ 653 (891)
-.+|.++.++|||+++|.++|+++++++. +...+.. ...|... .....++.. ......+..+++.
T Consensus 193 ~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~a~~~~l~~ 263 (371)
T 2e7j_A 193 VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEW-AEIVLRRSEKYKNKE-----VELLGCTAR---GATIITLMASFPH 263 (371)
T ss_dssp CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTT-TTTTTCBCSSCTTSB-----GGGTTCCCC---SHHHHHHHHHHHH
T ss_pred CChhhcCCCEEEecCCcCCCCCCCcEEEEEechh-hhhhccccccCcccc-----cccccCCcC---HHHHHHHHHHHHH
Confidence 13699999999999999999999998752 1110111 1111110 000000100 1111222334443
Q ss_pred HHHhhHHHHHHHH--HHHHHHHHHHhccCCCcEEeCCC--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 654 YGLSGLQKYIRRH--CELAKLFEGKVRRDPRFEISNDV--RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 654 lG~~G~~~~i~~~--~~lA~~L~~~L~~~~~~eil~~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
+.. +..++. .++++++.+.|++. +++++.++ ..++++|++. ...++.+.|.+.|+... +..
T Consensus 264 ~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~~~-~~~ 328 (371)
T 2e7j_A 264 VRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE---------VLYEISKKAKGGRFFLY-REL 328 (371)
T ss_dssp HHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH---------HHHHHHHHSSSGGGHHH-HHH
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC---------CHHHHHHHHHHCCEEEE-ecc
Confidence 332 455666 78999999999887 88887654 4678888874 23567777777787632 211
Q ss_pred --c-----cCCeEE-EEecCC-CCHHHHHHHHHHHHHHHH
Q psy852 730 --Q-----EQNDEV-FELQER-KRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 730 --~-----~g~~~l-~sv~~~-tT~edId~li~~L~ei~~ 760 (891)
. ....+. ++++.. ++++|++++++.|+++.+
T Consensus 329 ~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~ 368 (371)
T 2e7j_A 329 KSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 368 (371)
T ss_dssp HHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 1 123445 778877 899999999999998763
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=129.92 Aligned_cols=273 Identities=10% Similarity=0.086 Sum_probs=172.4
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+... +++ ++++|++++..++.+++. .+.-.|+++..+|.+...++...
T Consensus 60 ~l~~~la~~~~~~---~~i--~~~~gt~al~~~l~~~~~------------------~~gd~vl~~~~~~~~~~~~~~~~ 116 (391)
T 3dr4_A 60 EFEKAFADYCGVK---HAI--ACNNGTTALHLALVAMGI------------------GPGDEVIVPSLTYIASANSVTYC 116 (391)
T ss_dssp HHHHHHHHHHTCS---EEE--EESSHHHHHHHHHHHHTC------------------CTTCEEEEESSSCTHHHHHHHHT
T ss_pred HHHHHHHHHhCCC---cEE--EeCCHHHHHHHHHHHcCC------------------CCcCEEEECCCchHHHHHHHHHC
Confidence 3444555555442 334 567889999988876521 01235888999999999999989
Q ss_pred CceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcC--------------
Q psy852 527 FVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQG-------------- 578 (891)
Q Consensus 527 gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldG-------------- 578 (891)
|.+++.+|++ +++.+|+++|+++++++++ .+++++..|... |.++ +|.
T Consensus 117 g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~----~v~~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~ 192 (391)
T 3dr4_A 117 GATPVLVDNDPRTFNLDAAKLEALITPRTK----AIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSG 192 (391)
T ss_dssp TCEEEEECBCTTTCSBCGGGSGGGCCTTEE----EECCBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT
T ss_pred CCEEEEEecCccccCcCHHHHHHhcCCCce----EEEEECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeec
Confidence 9999999998 5789999999998875321 233445556654 4331 121
Q ss_pred -CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 579 -IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 579 -i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
+..++.+++++||+++++ ..|+++.+++......-.......... ..+ +....+..++...+..++......
T Consensus 193 ~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~--~~~----~~~~~g~~~~~~~l~aa~~~~~~~ 265 (391)
T 3dr4_A 193 SLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDPN--RRY----WFPIVGFNYRMTNIQAAIGLAQLE 265 (391)
T ss_dssp SSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCTT--STT----CCSSCCCBCBCCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCCC--Ccc----cccccccccCCCHHHHHHHHHHHH
Confidence 123677777799999763 356666655433221110000000000 000 001112233445566666666778
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--C-----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec--
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISND--V-----RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA-- 728 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~-----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s-- 728 (891)
++.+.+++..++++++.+.|++. ++++... + ...++.+++.+.. +....++.+.|.++|+....+.
T Consensus 266 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~L~~~GI~v~~~~~p 340 (391)
T 3dr4_A 266 RVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGL----STTRDQVIKDLDALGIESRPVFHP 340 (391)
T ss_dssp THHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSC----SSCHHHHHHHHHHTTCCCEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCcc----chhHHHHHHHHHHCCCceeecCCc
Confidence 88999999999999999999998 8877654 2 1234566665310 1235688999999998754332
Q ss_pred -cc-----------------cCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 729 -SQ-----------------EQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 729 -~~-----------------~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.+ .....+ ++++..+|++|||+++++|+++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 341 MHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp GGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTT
T ss_pred cccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 00 013456 8889999999999999999864
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-09 Score=121.29 Aligned_cols=275 Identities=10% Similarity=0.070 Sum_probs=171.3
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+.. +. .|+ +++ |++++..++.+.+. .+.-.|+++..+|.+...++...|
T Consensus 43 l~~~la~~~~~-~~-~i~--~~s-Gt~al~~~l~~l~~------------------~~gd~Vi~~~~~~~~~~~~~~~~g 99 (388)
T 1b9h_A 43 FEREFAAHHGA-AH-ALA--VTN-GTHALELALQVMGV------------------GPGTEVIVPAFTFISSSQAAQRLG 99 (388)
T ss_dssp HHHHHHHHTTC-SE-EEE--ESC-HHHHHHHHHHHTTC------------------CTTCEEEEESSSCTHHHHHHHHTT
T ss_pred HHHHHHHHhCC-Ce-EEE--eCC-HHHHHHHHHHHcCC------------------CCcCEEEECCCccHHHHHHHHHcC
Confidence 33455555543 22 344 344 48999988876520 012358889999999999998889
Q ss_pred ceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hc-----C----------
Q psy852 528 VRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQ-----G---------- 578 (891)
Q Consensus 528 v~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ld-----G---------- 578 (891)
.+++.+|+|++ +.+|+++|+++|+++++ .+++++..|+.. |.++ +| |
T Consensus 100 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~----~v~~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~ 175 (388)
T 1b9h_A 100 AVTVPVDVDAATYNLDPEAVAAAVTPRTK----VIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGE 175 (388)
T ss_dssp CEEEEECBCTTTCCBCHHHHHHHCCTTEE----EECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGG
T ss_pred CEEEEEecCCCcCCCCHHHHHHhcCcCce----EEEEeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccc
Confidence 99999999874 89999999999975321 122445556654 3331 11 1
Q ss_pred CCCccEEEEcCcccCCcccccEEEEEeCCcc--chhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH
Q psy852 579 IEYADSFNVNVNKWLLTAFDSSCLWVADRYK--LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL 656 (891)
Q Consensus 579 i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~--L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~ 656 (891)
...++..+++.||++.++ ..|+++.+++.. +............. ....+.......+-+...+..+..+. +.
T Consensus 176 ~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~a~~~~--~~ 249 (388)
T 1b9h_A 176 LDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPR---DDRRYFHKIAGSNMRLNEFSASVLRA--QL 249 (388)
T ss_dssp SSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCT---TCSSCCCCSCCCBCBCBHHHHHHHHH--HH
T ss_pred ccceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHhCCCCc---cCccceeecccccCCcCHHHHHHHHH--HH
Confidence 124788999999999876 468777776533 33221111000000 00000000001111223344444332 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-----C-ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISND-----V-RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS- 729 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-----~-~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~- 729 (891)
+.+.+.+++..++++++.+.|++++++++..+ + ..++++|++++.. .....++.+.|.+.|+....+..
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~gI~v~~~~~~ 325 (388)
T 1b9h_A 250 ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EERRNALVDRLVEAGLPAFAAFRA 325 (388)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHHHHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC----cccHHHHHHHHHHCCCCcccccCc
Confidence 56778888888999999999999889988753 2 2478899986421 12356788999999987544321
Q ss_pred -cc---------------------------CCeEE-EEecCCC-CHHHHHHHHHHHHHHH
Q psy852 730 -QE---------------------------QNDEV-FELQERK-RKDDLAYKRSFFVRML 759 (891)
Q Consensus 730 -~~---------------------------g~~~l-~sv~~~t-T~edId~li~~L~ei~ 759 (891)
.. ....+ +++++.+ |++|||+++++|+++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~ 385 (388)
T 1b9h_A 326 IYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAV 385 (388)
T ss_dssp GGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred cccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 00 01256 8899888 9999999999999876
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-11 Score=137.32 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=66.6
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEec--CCC----CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEP--DDK----NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~--d~~----g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I 217 (891)
.|+++..+|.|+..++.+.|.+++++++ |++ +.+|+++| +... +.+|+++. .|.+|.+.|+++|
T Consensus 98 ~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~~~~d~~~l---~~~~------~~~v~~~~-~n~~G~~~~l~~I 167 (446)
T 2x3l_A 98 DILMARNVHKSVLHALDISQQEGHFIETHQSPLTNHYNKVNLSRL---NNDG------HKLVVLTY-PNYYGETFNVEEV 167 (446)
T ss_dssp CEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHH
T ss_pred EEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCcCCCCCHHHH---cCCC------ceEEEEEC-CCCCeEecCHHHH
Confidence 4888899999999999877888999988 766 78999988 2222 34667777 5569999999999
Q ss_pred HHHHHHcCCceeeeccccCC
Q psy852 218 GPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~ 237 (891)
+++|+++|+++|+|.|||++
T Consensus 168 ~~l~~~~~~~livDea~~~~ 187 (446)
T 2x3l_A 168 IKSLHQLNIPVLIDEAHGAH 187 (446)
T ss_dssp HHHHHHTTCCEEEECTTCTT
T ss_pred HHHHHhcCCeEEEcchhhhh
Confidence 99999999999999999773
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-09 Score=119.41 Aligned_cols=273 Identities=12% Similarity=0.083 Sum_probs=168.0
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH--
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-- 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~-- 524 (891)
++.+.+++.+...+. +++ +++|+++++..++.+++.... ... .++-+|+++...|.+...++.
T Consensus 75 ~l~~~la~~~g~~~~-~v~--~~~g~t~al~~al~~~~~~~~-~~~-----------~gd~vii~~~~~~~~~~~~~~~~ 139 (416)
T 1qz9_A 75 RLGNRLATLIGARDG-EVV--VTDTTSINLFKVLSAALRVQA-TRS-----------PERRVIVTETSNFPTDLYIAEGL 139 (416)
T ss_dssp HHHHHHHTTTTCCTT-SEE--ECSCHHHHHHHHHHHHHHHHH-HHS-----------TTCCEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcc-cEE--EeCChhHHHHHHHHhhccccc-ccC-----------CCCcEEEEcCCCCCchHHHHHHH
Confidence 344566666654333 455 567888888777777653111 000 122367888889998776543
Q ss_pred --Hc--CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc--------hhhh-----hcCCC----
Q psy852 525 --MA--FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS--------CYRK-----SQGIE---- 580 (891)
Q Consensus 525 --l~--gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c~~~-----ldGi~---- 580 (891)
.. |.+++.+|. +++|+++|++++ ..++++.. .|... |+++ +|++.
T Consensus 140 ~~~~~~g~~~~~v~~-------~~~l~~~i~~~~----~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~ 208 (416)
T 1qz9_A 140 ADMLQQGYTLRLVDS-------PEELPQAIDQDT----AVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA 208 (416)
T ss_dssp HHHHCSSCEEEEESS-------GGGHHHHCSTTE----EEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred HHHhcCCceEEEeCc-------HHHHHHHhCCCc----eEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccC
Confidence 23 788888887 778888886421 12222222 24443 4432 23221
Q ss_pred --------CccEEEEcCcccCCccccc-EEEEEeCCccchhhhcc-CCCccccCCC----CCcccc--CCccc-cccc-c
Q psy852 581 --------YADSFNVNVNKWLLTAFDS-SCLWVADRYKLTSALVV-DPLYLQHGHE----GAIDYR--HWGIP-LSRR-F 642 (891)
Q Consensus 581 --------~aDSIs~d~HK~L~~P~g~-G~llvR~~~~L~~~l~~-~~~Yl~~~~e----~~~~~~--~~ti~-~SRr-~ 642 (891)
.+|.+++++||+++++.++ |+++++++. + +.+.. ...|...... ..+.+. ..... ++-. .
T Consensus 209 ~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~-~-~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (416)
T 1qz9_A 209 VPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQL-C-DLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPIT 286 (416)
T ss_dssp SCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTT-T-TTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHH
T ss_pred cCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHH-H-hccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHH
Confidence 3799999999999878888 999998662 1 11111 1111111000 000000 00111 1111 1
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-C--CcEEeCCC----ceeEEEEEecCCcchhhhhhHHHHHH
Q psy852 643 RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD-P--RFEISNDV----RLGLVCFRLRSENNLIADQNNRKLLE 715 (891)
Q Consensus 643 ~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~-~--~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln~~L~~ 715 (891)
..+.++.+++.+..+++++..++..++++++.+.|++. + +++++.+. ..++++|++.+ ...+.+
T Consensus 287 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~ 357 (416)
T 1qz9_A 287 SLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---------GYAVIQ 357 (416)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC---------HHHHHH
Confidence 12355667776666789999999999999999999885 6 88887653 36788888741 467888
Q ss_pred HHHhCCcEEEeeccccCCeEE-EEec-CCCCHHHHHHHHHHHHHHHH
Q psy852 716 DINASGRLHMVPASQEQNDEV-FELQ-ERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 716 ~L~~~G~~~~s~s~~~g~~~l-~sv~-~~tT~edId~li~~L~ei~~ 760 (891)
.|.++|+.. ...+...+ ++++ ..+|++||+++++.|+++..
T Consensus 358 ~l~~~gi~~----~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~ 400 (416)
T 1qz9_A 358 ALIDRGVIG----DYREPRIMRFGFTPLYTTFTEVWDAVQILGEILD 400 (416)
T ss_dssp HHHTTTEEC----EEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcEe----ccCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHh
Confidence 898889763 22345567 9987 48999999999999998763
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-10 Score=128.03 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=71.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|++...++...|.+++.+++| +++.+|+++|++.+++. +.+|+ .++.+|.+.|+++|+++|+
T Consensus 98 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~---~~n~tG~~~~~~~i~~l~~ 168 (391)
T 3dr4_A 98 EVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPR------TKAIM---PVHLYGQICDMDPILEVAR 168 (391)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCC------ceEEE---EECCCCChhhHHHHHHHHH
Confidence 48888999999999988888899999998 67899999999988653 23444 3579999999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++++|+||+
T Consensus 169 ~~~~~li~D~a~~ 181 (391)
T 3dr4_A 169 RHNLLVIEDAAEA 181 (391)
T ss_dssp HTTCEEEEECTTC
T ss_pred HcCCEEEEECccc
Confidence 9999999999984
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-10 Score=128.20 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=69.0
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+....+ ...+.+++.++++ |+++|+++++++ +.+|++...+|.+|.+.|+++|++
T Consensus 107 ~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~ 175 (392)
T 3qhx_A 107 HVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA-----DLDAVRAAIRPT------TRLIWVETPTNPLLSIADIAGIAQ 175 (392)
T ss_dssp EEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC-----CHHHHHHhhCCC------CeEEEEECCCCCCcEEecHHHHHH
Confidence 4888899999887776 2356789999876 899999988754 457888889999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++|+|.+|+
T Consensus 176 la~~~g~~li~D~~~~ 191 (392)
T 3qhx_A 176 LGADSSAKVLVDNTFA 191 (392)
T ss_dssp HHHHHTCEEEEECTTT
T ss_pred HHHHcCCEEEEECCCc
Confidence 9999999999999984
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=141.54 Aligned_cols=211 Identities=15% Similarity=0.054 Sum_probs=135.9
Q ss_pred EEEecCCCChHHHHH-HHHcCCeEEEEecCCC-----CcccHHHH-----HHHHHhh-hh--cCCcc-eEEEeecccCcc
Q psy852 144 MAYCSKEAHSCVEKA-AMMAFVRLKILEPDDK-----NSLRGATL-----RQVMQQD-ET--MGYIP-FFVSTTLGTTSC 208 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka-a~~~~~~v~~V~~d~~-----g~id~~~L-----~~~l~~~-~~--~g~~p-~~V~~t~Gtt~~ 208 (891)
.|+++..+|.|+..+ +.+.|.++++++.+.+ |.+|+++| +++|++. .+ ....| .+|+++..| .+
T Consensus 215 ~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn-~~ 293 (730)
T 1c4k_A 215 LVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YD 293 (730)
T ss_dssp EEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC-TT
T ss_pred EEEEcCCchHHHHHHHHHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC-CC
Confidence 488899999999998 6777888888887532 56899999 7777543 10 01123 466677664 79
Q ss_pred ccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhh
Q psy852 209 CSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISK 288 (891)
Q Consensus 209 GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 288 (891)
|.+.|+++|+++|+++|+++|+|+|||+.+.+.+.+++ .++
T Consensus 294 G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g------------~~~--------------------------- 334 (730)
T 1c4k_A 294 GTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRN------------SSP--------------------------- 334 (730)
T ss_dssp SEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGG------------GCT---------------------------
T ss_pred CeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCC------------cCc---------------------------
Confidence 99999999999999999999999999654332111000 000
Q ss_pred hcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCccc----EE
Q psy852 289 LKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYAD----SF 364 (891)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~d----s~ 364 (891)
+. .+ -..+| .+
T Consensus 335 ----------------------------------------------------------l~------~~-~~g~D~~~~iv 349 (730)
T 1c4k_A 335 ----------------------------------------------------------LL------ID-DLGPEDPGIIV 349 (730)
T ss_dssp ----------------------------------------------------------TS------CC-CCCTTSCEEEE
T ss_pred ----------------------------------------------------------cc------cc-ccCCCCCCEEE
Confidence 00 00 00235 89
Q ss_pred EEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccc-cccccCCCCChh-HHHHHHHHHHhcHHHHHHHH
Q psy852 365 NVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDY-RHWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYI 442 (891)
Q Consensus 365 ~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii 442 (891)
+.++||++.+|-.+|+++++++.. .....++... .++. ......+|-... ..++-.+++.+..++..+++
T Consensus 350 ~~S~hK~L~g~~~gg~I~v~~~~l-----~g~~~~i~~~---~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~ 421 (730)
T 1c4k_A 350 VQSVHKQQAGFSQTSQIHKKDSHI-----KGQLRYCDHK---HFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLW 421 (730)
T ss_dssp EECHHHHSSCCTTCEEEEEECGGG-----TTSTTCCCHH---HHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred EECCCCCCCCCCCEEEEEecchhh-----cCcccccCHH---HHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999998889999988641 1111222100 0000 000011222222 22344556666665557778
Q ss_pred HHHHHHHHHHHHhhcc-CCccccccC
Q psy852 443 RRHCELAKLFEGKVRR-DPRFEISND 467 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~-~~~~eVv~~ 467 (891)
++.+++++++++.|.+ +++++++++
T Consensus 422 ~~~~~~a~~lr~~L~~~i~g~~v~~p 447 (730)
T 1c4k_A 422 HDLLITTIEARKKLIKAGSMFRPFVP 447 (730)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSEESSC
T ss_pred HHHHHHHHHHHHHHhhhCCCeEEccc
Confidence 9999999999999988 799999865
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-10 Score=120.98 Aligned_cols=259 Identities=10% Similarity=0.088 Sum_probs=164.6
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH--HH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA--AM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka--a~ 524 (891)
++++++.+.+...+. +++ +++|+++++..++.+++. +.-.|+++..+|++...+ +.
T Consensus 53 ~~~~~l~~~~g~~~~-~v~--~~~g~t~a~~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~ 110 (359)
T 1svv_A 53 KAARLIGELLERPDA-DVH--FISGGTQTNLIACSLALR-------------------PWEAVIATQLGHISTHETGAIE 110 (359)
T ss_dssp HHHHHHHHHHTCTTS-EEE--EESCHHHHHHHHHHHHCC-------------------TTEEEEEETTSHHHHSSTTHHH
T ss_pred HHHHHHHHHhCCCCc-cEE--EeCCchHHHHHHHHHHhC-------------------CCCEEEEcccchHHHHHHHHHh
Confidence 344455555543232 455 688999999999877632 123588899999999884 66
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhh-hcCCcc--EEEEec--CCccc-----------hhhh-----hcCC----
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDE-TMGYIP--FFVSTT--LGTTS-----------CYRK-----SQGI---- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~-~~g~ip--~~Vvat--aGTT~-----------c~~~-----ldGi---- 579 (891)
..|.+++.+|.+ ++.+|+++|+++|++.. +.+..+ ++++.. .|... |.++ +|++
T Consensus 111 ~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 189 (359)
T 1svv_A 111 ATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLAS 189 (359)
T ss_dssp HTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHH
T ss_pred cCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccchhh
Confidence 778899999986 79999999999998741 112122 222222 24432 3321 1211
Q ss_pred ---------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccc
Q psy852 580 ---------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRS 644 (891)
Q Consensus 580 ---------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~a 644 (891)
..+|++++++||++ .|.++|+++++++ .+. .+.. +.... ......+. ..
T Consensus 190 ~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~~~-~~~-~~~~---~~~~~--------~~~~~~~~--~~ 253 (359)
T 1svv_A 190 ALSSPVNDLTLADIARLTDMFYIGATKAG-GMFGEALIILNDA-LKP-NARH---LIKQR--------GALMAKGW--LL 253 (359)
T ss_dssp HHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECSGG-GCT-THHH---HHHHT--------TCCCTTTH--HH
T ss_pred hhcCCCcchhhhhhhhcCCEEEEecccCC-CCCceEEEEEccc-HHH-HHHH---HHhcC--------Ccccccch--hh
Confidence 24689999999984 5899999988644 221 1110 00000 00000000 11
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhC-CcE
Q psy852 645 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINAS-GRL 723 (891)
Q Consensus 645 L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~ 723 (891)
...+ ...+...++.+..++..++++++.+.| +.+++++..+...+.+++++. .++.+.|.++ |+.
T Consensus 254 ~~~~--~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~gi~ 319 (359)
T 1svv_A 254 GIQF--EVLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE-----------NTMIAELNNDFDMY 319 (359)
T ss_dssp HHHH--HHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE-----------HHHHHHHTTTEECE
T ss_pred HHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC-----------HHHHHHHHHhcCEE
Confidence 1111 123444567888889999999999999 567888876666777766653 3678888888 987
Q ss_pred EEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 724 HMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 724 ~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+... ...+...+ ++++..++++||+++++.|++++
T Consensus 320 v~~~-~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 355 (359)
T 1svv_A 320 TVEP-LKDGTCIMRLCTSWATEEKECHRFVEVLKRLV 355 (359)
T ss_dssp EEEE-ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC-
T ss_pred EEec-ccCCCceEEEEccCcCCHHHHHHHHHHHHHHH
Confidence 6321 12344567 98888899999999999998765
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-10 Score=126.34 Aligned_cols=235 Identities=11% Similarity=0.076 Sum_probs=147.4
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
..+...++|..+.+++++++|.+.... ++++|+.. +...+..+..
T Consensus 63 ~~~~~~~l~~~~r~~la~~~g~~~~~i------------------------------~~~sGt~a-~~~a~~~~~~---- 107 (405)
T 2vi8_A 63 GCEYVDIVEELARERAKQLFGAEHANV------------------------------QPHSGAQA-NMAVYFTVLE---- 107 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEEC------------------------------CCSSHHHH-HHHHHHHHCC----
T ss_pred cchHHHHHHHHHHHHHHHHhCCCceEE------------------------------EecCcHHH-HHHHHHHhcC----
Confidence 447778999999999999999874311 12355543 3333322211
Q ss_pred CCccccccccCCeEEEecCCCChHHHHH---HHHcC--CeEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVEKA---AMMAF--VRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLG 204 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~ka---a~~~~--~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~G 204 (891)
+...|+++..+|.+.... +...+ .+++.++++ +++.+|+++|++.+++.. +.+|+++
T Consensus 108 ----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~-- 170 (405)
T 2vi8_A 108 ----------HGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHR-----PKLIVAA-- 170 (405)
T ss_dssp ----------TTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC-----CSEEEEC--
T ss_pred ----------CCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcC-----CeEEEEe--
Confidence 112366666778776431 11212 367778776 678999999999997631 2344443
Q ss_pred cCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHH
Q psy852 205 TTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQ 284 (891)
Q Consensus 205 tt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~ 284 (891)
.+..|...|+++|.++|+++|+++++|.|++. .....
T Consensus 171 ~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~-g~~~~------------------------------------------ 207 (405)
T 2vi8_A 171 AAAYPRIIDFAKFREIADEVGAYLMVDMAHIA-GLVAA------------------------------------------ 207 (405)
T ss_dssp CSSCCSCCCHHHHHHHHHHHTCEEEEECTTTH-HHHHT------------------------------------------
T ss_pred CCCCCccCCHHHHHHHHHHcCCEEEEEccccc-ccccc------------------------------------------
Confidence 24457888999999999999999999999841 00000
Q ss_pred HHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEE
Q psy852 285 AISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSF 364 (891)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~ 364 (891)
+. . . .++..+|.+
T Consensus 208 -----------------------------------------------~~--------------~----~--~~~~~~di~ 220 (405)
T 2vi8_A 208 -----------------------------------------------GL--------------H----P--NPVPYAHFV 220 (405)
T ss_dssp -----------------------------------------------TS--------------S----C--CSTTTCSEE
T ss_pred -----------------------------------------------Cc--------------C----C--CccccCCEE
Confidence 00 0 0 011246888
Q ss_pred EEeCCCcCCccCCceEEEEeccccchhhccc-CccccCCCCCCcccccccccCCCCC-hhHHHHHHHHHHhcHHHHHHHH
Q psy852 365 NVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYI 442 (891)
Q Consensus 365 ~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~G~~~ii 442 (891)
+.++||++.+|.+ |+++.++. +...+.. ...+ . .++-. ....++..+++.+..+++.++.
T Consensus 221 ~~s~sK~~~g~~g-G~~~~~~~--~~~~l~~~~~~~--------------~-~~~~~~~~~aa~~~al~~~~~~~~~~~~ 282 (405)
T 2vi8_A 221 TTTTHKTLRGPRG-GMILCQEQ--FAKQIDKAIFPG--------------I-QGGPLMHVIAAKAVAFGEALQDDFKAYA 282 (405)
T ss_dssp EEESSSTTCCCSC-EEEEECHH--HHHHHHHHHTTT--------------T-CSSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEeccccCCCCCC-eEEEEcHH--HHHHHHhhhccc--------------c-cCCCCHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999888888 88888632 2221211 0001 0 11112 2333455667666567899999
Q ss_pred HHHHHHHHHHHHhhccCCcccccc
Q psy852 443 RRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
++..++++++.+.|++. +++++.
T Consensus 283 ~~~~~~~~~l~~~L~~~-g~~~~~ 305 (405)
T 2vi8_A 283 KRVVDNAKRLASALQNE-GFTLVS 305 (405)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEGG
T ss_pred HHHHHHHHHHHHHHHhC-CCeEec
Confidence 99999999999999887 777664
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=127.58 Aligned_cols=270 Identities=10% Similarity=0.055 Sum_probs=169.5
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+... +++ +++||++++..++.+++. .+.-.|+++..+|.++..++...
T Consensus 40 ~l~~~la~~~~~~---~~i--~~~sgt~al~~~l~~l~~------------------~~gd~Vi~~~~~~~~~~~~~~~~ 96 (373)
T 3frk_A 40 KFEQEFADYCNVN---YCI--GCGNGLDALHLILKGYDI------------------GFGDEVIVPSNTFIATALAVSYT 96 (373)
T ss_dssp HHHHHHHHHHTSS---EEE--EESCHHHHHHHHHHHTTC------------------CTTCEEEEETTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---eEE--EeCCHHHHHHHHHHHcCC------------------CCcCEEEECCCCcHHHHHHHHHc
Confidence 3444555555542 344 578899999988876421 12235889999999999999888
Q ss_pred CceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcCC-------------
Q psy852 527 FVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQGI------------- 579 (891)
Q Consensus 527 gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldGi------------- 579 (891)
|.+++.+|.+ +++.+|+++|+++|++++ ..+++++..|... |.++ +|++
T Consensus 97 g~~~~~~~~~~~~~~~d~~~l~~~l~~~~----~~v~~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~ 172 (373)
T 3frk_A 97 GAKPIFVEPDIRTYNIDPSLIESAITEKT----KAIIAVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVG 172 (373)
T ss_dssp SCEEEEECEETTTTEECGGGTGGGCCTTE----EEEEEECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETT
T ss_pred CCEEEEEeccccccCcCHHHHHHhcCCCC----eEEEEECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEecc
Confidence 9999999997 678999999999987632 2334666677765 4431 2221
Q ss_pred CCccEEEEc--CcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 580 EYADSFNVN--VNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 580 ~~aDSIs~d--~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
..+|.++++ +||+++.+...|+++.++.......-........ ..+.. ...+-.++...+..++.....+
T Consensus 173 ~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~----~~~~~----~~~g~~~~~~~~~aa~~~~~~~ 244 (373)
T 3frk_A 173 SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSE----KKYHH----IYKGFNSRLDELQAGFLRVKLK 244 (373)
T ss_dssp SSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCS----BTTBC----CSCCCBCCCCHHHHHHHHHHHH
T ss_pred ccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcc----cCCcc----ccccccCCCCHHHHHHHHHHHH
Confidence 115777777 7799976344566665554332211100000000 00000 0011122334455666666778
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec----cc
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA----SQ 730 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s----~~ 730 (891)
++.+..++..++++++.+.|++.+ +++...+. .+.+.|.+... ....+.+.|.++|+...... ..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~gI~v~~~~~~~~~~ 316 (373)
T 3frk_A 245 YLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSE-------KRDELQKYLNNNGIGTLIHYPIPIHL 316 (373)
T ss_dssp THHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEES-------SHHHHHHHHHHTTBCCBCSCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeC-------CHHHHHHHHHHCCCCcccCcCCcccc
Confidence 889999999999999999999987 77653322 22333444322 35678899999998643221 11
Q ss_pred c-------------------CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 E-------------------QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ~-------------------g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
. ....+ +++++++|++|||+++++|++..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 317 QQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp SGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred ChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0 01467 99999999999999999998654
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-09 Score=120.01 Aligned_cols=160 Identities=13% Similarity=-0.008 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC-ccccccccCCCCCCCCc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND-IDMNIEDYMTPANQPQS 108 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~-~~~~~~~~~t~~~~~~~ 108 (891)
.+.+...+...+-+ ....|...+...+++..+.+++.+..|++.+. +. + .+
T Consensus 41 ~~~v~~a~~~~~~~-~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-------------~~~v--------------~~ 92 (389)
T 1gd9_A 41 PQHIKEYAKEALDK-GLTHYGPNIGLLELREAIAEKLKKQNGIEADP-------------KTEI--------------MV 92 (389)
T ss_dssp CHHHHHHHHHHHHT-TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT-------------TTSE--------------EE
T ss_pred CHHHHHHHHHHHhC-CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC-------------CCeE--------------EE
Confidence 45554444333322 22233333346799999999999998974321 01 1 13
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVM 186 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l 186 (891)
++||+.. +...+.... .+...|+++..+|+++..++...|.+++.++.++ .+.+|+++|++.+
T Consensus 93 ~~g~~~a-~~~~~~~~~--------------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 157 (389)
T 1gd9_A 93 LLGANQA-FLMGLSAFL--------------KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV 157 (389)
T ss_dssp ESSTTHH-HHHHHTTTC--------------CTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC
T ss_pred cCChHHH-HHHHHHHhC--------------CCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhc
Confidence 4677643 222221110 1123477788899999988877778999999885 4579999999988
Q ss_pred HhhhhcCCcceEEEeecccCcccccc---CHHHHHHHHHHcCCceeeeccccCCc
Q psy852 187 QQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 187 ~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
++. +.+|+++..+|.+|.+- ++++|+++|+++|+++++|.+|+++.
T Consensus 158 ~~~------~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~ 206 (389)
T 1gd9_A 158 TDK------TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFI 206 (389)
T ss_dssp CTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred CcC------ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence 653 34666678899999986 49999999999999999999996643
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-09 Score=119.95 Aligned_cols=280 Identities=10% Similarity=0.099 Sum_probs=173.0
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+.. + +++ +++|+++++..++.+.+. .+.-.|+++..+|.+...++...
T Consensus 36 ~l~~~la~~~~~-~--~v~--~~~ggt~al~~~~~~l~~------------------~~gd~Vl~~~~~~~~~~~~~~~~ 92 (394)
T 1o69_A 36 RFEQSVKDYSKS-E--NAL--ALNSATAALHLALRVAGV------------------KQDDIVLASSFTFIASVAPICYL 92 (394)
T ss_dssp HHHHHHHHHHCC-S--EEE--EESCHHHHHHHHHHHTTC------------------CTTCEEEEESSSCGGGTHHHHHT
T ss_pred HHHHHHHHHhCC-C--cEE--EeCCHHHHHHHHHHHcCC------------------CCCCEEEECCCccHHHHHHHHHc
Confidence 344455555543 2 355 678999999988877520 01225888999999999999888
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hc----------C-----
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQ----------G----- 578 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ld----------G----- 578 (891)
|.+++.+|+++++.+|+++|+++|++... ....++++...|+.. |.++ +| |
T Consensus 93 g~~~~~v~~~~~~~~d~~~l~~~i~~~~~-~~~~v~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~ 171 (394)
T 1o69_A 93 KAKPVFIDCDETYNIDVDLLKLAIKECEK-KPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGT 171 (394)
T ss_dssp TCEEEEECBCTTSSBCHHHHHHHHHHCSS-CCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS
T ss_pred CCEEEEEEeCCCCCcCHHHHHHHHhcccC-CceEEEEECCCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCccccc
Confidence 99999999998899999999999986310 122345555666554 4331 11 1
Q ss_pred CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 579 IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 579 i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
...+|.+++++||+++ |.++|++++++++.+.........+.... +.+. ..+.+.+++.-.+++++.....+-
T Consensus 172 ~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~--~~~~----~~~~g~~~~~~~~~aa~~l~~l~~ 244 (394)
T 1o69_A 172 FGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENC--LHYE----HLDYGYNYRLSNVLGAIGVAQMEV 244 (394)
T ss_dssp SSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSS--SSCC----CSSCCCBCBCCHHHHHHHHHHHTT
T ss_pred ccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccC--cccc----ccccCcccCcCHHHHHHHHHHHHH
Confidence 1347899999999775 77899999976543322211111111100 0000 011122223323333333223456
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----ceeEEEEEecCCc---------------chhhhhhHHHHHHHHH
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----RLGLVCFRLRSEN---------------NLIADQNNRKLLEDIN 718 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----~~~iV~Fr~~~~~---------------~~~~d~ln~~L~~~L~ 718 (891)
+++.+++..++++++.+.|++. +++..++ ...+++|++.+.. ....+.....+.+.|.
T Consensus 245 l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (394)
T 1o69_A 245 LEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK 322 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH
Confidence 7888899999999999999886 6665442 2236788885320 0000113567889999
Q ss_pred hCCcEEEeec-------cccCC-------------eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMVPA-------SQEQN-------------DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 719 ~~G~~~~s~s-------~~~g~-------------~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.|+....+. ..... ..+ +..+.++|++|||+++++|+++.
T Consensus 323 ~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~ 384 (394)
T 1o69_A 323 NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSI 384 (394)
T ss_dssp HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 9998754331 11110 234 45678899999999999999875
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.9e-10 Score=124.34 Aligned_cols=160 Identities=13% Similarity=0.062 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..|.++..+...+-. ....+... ..+++..+.+|+++.+|++... +.+ .+
T Consensus 75 ~~~~v~~a~~~~~~~-~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~-------------~~v--------------~~ 124 (421)
T 3l8a_A 75 PVPEIKEAIINYGRE-HIFGYNYF--NDDLYQAVIDWERKEHDYAVVK-------------EDI--------------LF 124 (421)
T ss_dssp CCHHHHHHHHHHHHH-CCSSCBCC--CHHHHHHHHHHHHHHHCCCCCG-------------GGE--------------EE
T ss_pred CCHHHHHHHHHHHhc-CCcCCCCC--CHHHHHHHHHHHHHHhCCCCCH-------------HHE--------------EE
Confidence 345565555444322 12222222 2789999999999999975331 111 14
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC-CCC--cccHHHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKN--SLRGATLRQV 185 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g--~id~~~L~~~ 185 (891)
++||+...+..+..+ .. +...|++..-+|++...++...+.+++.+|.+ .++ .+|+++|+++
T Consensus 125 ~~g~~ea~~~a~~~~-~~--------------~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~ 189 (421)
T 3l8a_A 125 IDGVVPAISIALQAF-SE--------------KGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKD 189 (421)
T ss_dssp ESCHHHHHHHHHHHH-SC--------------TEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-cC--------------CCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHH
Confidence 567764433333222 11 11237777889999988887778899999976 444 7899999999
Q ss_pred HHhhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 186 MQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 186 l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++.. +.+|+++..+|.+|.+ +++++|+++|+++|+++++|.+|+++.
T Consensus 190 i~~~~-----~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~ 240 (421)
T 3l8a_A 190 IIDNN-----VKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLA 240 (421)
T ss_dssp HHHTT-----EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred hhccC-----CeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 97421 3467778889999999 889999999999999999999997654
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.2e-10 Score=124.83 Aligned_cols=281 Identities=8% Similarity=-0.009 Sum_probs=169.4
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+.. + +.+ ++++|++++..++.+.+. .+.-.|+++..+|.+...++...|
T Consensus 47 l~~~la~~~g~-~--~~i--~~~~gt~al~~~~~~~~~------------------~~gd~Vl~~~~~~~~~~~~~~~~g 103 (418)
T 2c81_A 47 FAKAFADFNGV-P--YCV--PTTSGSTALMLALEALGI------------------GEGDEVIVPSLTWIATATAVLNVN 103 (418)
T ss_dssp HHHHHHHHHTC-S--EEE--EESCHHHHHHHHHHHTTC------------------CTTCEEEEESSSCTHHHHHHHHTT
T ss_pred HHHHHHHHhCC-C--cEE--EeCCHHHHHHHHHHHcCC------------------CCcCEEEECCCccHhHHHHHHHcC
Confidence 33445555543 2 233 456778999888876521 012358889999999999998889
Q ss_pred ceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hc----------C-----
Q psy852 528 VRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQ----------G----- 578 (891)
Q Consensus 528 v~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ld----------G----- 578 (891)
.+++.+|+++ ++.+|+++|+++|++++ ..++++...|+.. |.++ +| +
T Consensus 104 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~----~~v~~~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 179 (418)
T 2c81_A 104 ALPVFVDVEADTYCIDPQLIKSAITDKT----KAIIPVHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGT 179 (418)
T ss_dssp CEEEEECBCTTTCSBCHHHHGGGCCTTE----EEECCBCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS
T ss_pred CEEEEEecCCCCCCcCHHHHHHhhCCCC----eEEEEeCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEeccc
Confidence 9999999986 78999999999987532 1233445566654 4331 11 1
Q ss_pred CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCC-----CCCcc--ccCCc-ccccccccchHHHHH
Q psy852 579 IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH-----EGAID--YRHWG-IPLSRRFRSLKLWFV 650 (891)
Q Consensus 579 i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~-----e~~~~--~~~~t-i~~SRr~~aL~lW~~ 650 (891)
...++..++++||+++.+ ..|+++.++++.....-.....+..... ...+. .+... +....+...+..+
T Consensus 180 ~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa-- 256 (418)
T 2c81_A 180 IGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSA-- 256 (418)
T ss_dssp SSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHH--
T ss_pred ccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHH--
Confidence 122678888889999873 5666666544432211110000000000 00000 00001 1111122333322
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCce------eEEEEEecCCcchhhhhhHHHHHHHHHhC-CcE
Q psy852 651 IRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRL------GLVCFRLRSENNLIADQNNRKLLEDINAS-GRL 723 (891)
Q Consensus 651 L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~------~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~ 723 (891)
+.....+.+.+..++..++++++.+.|++++++++..+++. .+++|++.+.. ..+....++.+.|.++ |+.
T Consensus 257 ~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gI~ 334 (418)
T 2c81_A 257 ILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVK--FGGLNADQFCEILREKLNMG 334 (418)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGG--TTTCCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEcccc--ccccCHHHHHHHHHHcCCCC
Confidence 22334567888889999999999999999989998754431 36668875200 0011346788899888 987
Q ss_pred ---EEeeccc-------c--------------------C---------CeEE-EEecCCC-CHHHHHHHHHHHHHHHH
Q psy852 724 ---HMVPASQ-------E--------------------Q---------NDEV-FELQERK-RKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 724 ---~~s~s~~-------~--------------------g---------~~~l-~sv~~~t-T~edId~li~~L~ei~~ 760 (891)
...+... . + ...+ ++++..+ |++|||+++++|+++..
T Consensus 335 ~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~ 412 (418)
T 2c81_A 335 TFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELAR 412 (418)
T ss_dssp TTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHH
Confidence 5543210 0 1 1467 9999999 99999999999998864
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-10 Score=125.39 Aligned_cols=141 Identities=8% Similarity=-0.008 Sum_probs=103.8
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
..+...++...+.+++++.+|.+.... +.+ .+++||+......+..+ .
T Consensus 76 ~~~g~~~l~~~l~~~l~~~~g~~~~~~------------~~i--------------~~~~g~~~a~~~~~~~l--~---- 123 (407)
T 3nra_A 76 EYRGDLGIRDLLAPRLAAFTGAPVDAR------------DGL--------------IITPGTQGALFLAVAAT--V---- 123 (407)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTSCCCTT------------TSE--------------EEESHHHHHHHHHHHTT--C----
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCC------------CcE--------------EEeCCcHHHHHHHHHHh--C----
Confidence 344557889999999999999853210 001 13567754322222111 0
Q ss_pred CCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec------CCCCcccHHHHHHHHHhhhhcCCcceEEEeecc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP------DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG 204 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~------d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~G 204 (891)
.+.-.|+++.-+|.+...++...+.+++.++. ++++.+|+++|++.+++. +.+|+++..
T Consensus 124 ---------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p 188 (407)
T 3nra_A 124 ---------ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNP 188 (407)
T ss_dssp ---------CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTT------CCEEEEESS
T ss_pred ---------CCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhC------CcEEEEcCC
Confidence 12224778888999999998888889999998 478899999999999763 346667778
Q ss_pred cCccccccC---HHHHHHHHHHcCCceeeeccccCCc
Q psy852 205 TTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 205 tt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+|.+|.+-| +++|+++|+++|+++++|.||+++.
T Consensus 189 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~ 225 (407)
T 3nra_A 189 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLR 225 (407)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSB
T ss_pred CCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 999999999 9999999999999999999997644
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-09 Score=119.98 Aligned_cols=286 Identities=10% Similarity=0.064 Sum_probs=164.1
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHh-hhccCccc-cccccccceEEEecccchHHHHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISK-LKKIHPFV-DEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~-~~~~~~~~-~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
++.+.+++.+...+. +++ +++|+++++..++.++...+... ......+. ...--.....|+++..+|.|+.+++.
T Consensus 65 ~l~~~la~~~g~~~~-~v~--~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~ 141 (432)
T 3a9z_A 65 TARASLAKMIGGKPQ-DII--FTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLE 141 (432)
T ss_dssp HHHHHHHHHHTCCGG-GEE--EESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcC-eEE--EeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHH
Confidence 344455555554333 566 78899999999988875322210 00000000 00000122579999999999988764
Q ss_pred H----cCceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEec-----CCccc--------hhhh-----------
Q psy852 525 M----AFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTT-----LGTTS--------CYRK----------- 575 (891)
Q Consensus 525 l----~gv~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~Vvat-----aGTT~--------c~~~----------- 575 (891)
. .|.+++.+|.++ ++.+|+++|+++|++. +-+|+.+ .|+.. |+++
T Consensus 142 ~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~ 215 (432)
T 3a9z_A 142 HLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPT------TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPR 215 (432)
T ss_dssp HHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhcCcEEEEEecCcccCCcCHHHHHHhccCC------ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCc
Confidence 2 578999999986 8999999999998753 2223222 34433 4332
Q ss_pred ----hcCC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccc
Q psy852 576 ----SQGI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLS 639 (891)
Q Consensus 576 ----ldGi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~S 639 (891)
+|++ ..+|.+++++|||++ |. +|+++++++.... ...+.|....... .+. .++
T Consensus 216 ~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~-~~~ 284 (432)
T 3a9z_A 216 VLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-PR-IGALYVRGVGKLT---PLYPMLFGGGQER-----NFR-PGT 284 (432)
T ss_dssp CEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-CS-CEEEEETTBTTTB---CCCCSCCSSCGGG-----GTS-CSC
T ss_pred eEEEEEchhhhCCcccChhhcCCCEEEEehhHhcC-Cc-ceEEEEccccccC---CcCceeecCCccc-----ccc-CCC
Confidence 1221 147999999999875 76 9999998653111 1111121110000 000 011
Q ss_pred cc-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEe--CC----Cc-eeEEEEEecCCcchhhhhhHH
Q psy852 640 RR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS--ND----VR-LGLVCFRLRSENNLIADQNNR 711 (891)
Q Consensus 640 Rr-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil--~~----~~-~~iV~Fr~~~~~~~~~d~ln~ 711 (891)
-. .....+..+++.+ .+++++..++..+++++|.+.|++++++++. .+ .. .++++|.+.+.+ ....
T Consensus 285 ~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 358 (432)
T 3a9z_A 285 ENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ-----LRGY 358 (432)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT-----CCHH
T ss_pred cCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC-----CcHH
Confidence 11 1112233344433 3478888999999999999999886555442 33 12 348899987531 1123
Q ss_pred HHHHHHHhCCcEEEeeccc--------------cC------CeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 712 KLLEDINASGRLHMVPASQ--------------EQ------NDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 712 ~L~~~L~~~G~~~~s~s~~--------------~g------~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+.+.+ .|+....+..+ .+ ..++ ++++..+|++|++++++.|++++.
T Consensus 359 ~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~ 426 (432)
T 3a9z_A 359 MVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN 426 (432)
T ss_dssp HHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 344433 23322211111 01 2467 999999999999999999998863
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-10 Score=126.09 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=72.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.++..++...|.+++.+++|++ +.+|+++|+++++++ +.+|+ .++.+|...|+++|.++|+
T Consensus 77 ~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~---~~~~~G~~~~~~~i~~la~ 147 (367)
T 3nyt_A 77 EVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPR------TKAII---PVSLYGQCADFDAINAIAS 147 (367)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred EEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcC------CcEEE---eeCCccChhhHHHHHHHHH
Confidence 4888899999999999888889999999976 899999999988653 23444 6678999999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|++||+|+|++
T Consensus 148 ~~~~~li~D~a~~ 160 (367)
T 3nyt_A 148 KYGIPVIEDAAQS 160 (367)
T ss_dssp HTTCCBEEECTTT
T ss_pred HcCCEEEEECccc
Confidence 9999999999984
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-10 Score=126.50 Aligned_cols=271 Identities=7% Similarity=0.035 Sum_probs=172.3
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+... +++ +++||++++..++.+++. .+.-.|+++..+|.+...++...
T Consensus 42 ~l~~~la~~~~~~---~~~--~~~~gt~a~~~~~~~~~~------------------~~gd~v~~~~~~~~~~~~~~~~~ 98 (374)
T 3uwc_A 42 KFEKRFAALHNAP---HAI--GVGTGTDALAMSFKMLNI------------------GAGDEVITCANTFIASVGAIVQA 98 (374)
T ss_dssp HHHHHHHHHTTCS---EEE--EESCHHHHHHHHHHHTTC------------------CTTCEEEEESSSCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC---cEE--EeCCHHHHHHHHHHHcCC------------------CCCCEEEECCCccHHHHHHHHHc
Confidence 3444555665542 344 577889998887766421 12235888899999999999889
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcCC-------------C
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQGI-------------E 580 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldGi-------------~ 580 (891)
|.+++.+|.++++.+|+++|+++++++++ .+++++..|+.. |.++ +|.+ .
T Consensus 99 g~~~~~~~~~~~~~~d~~~l~~~~~~~~~----~v~~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~ 174 (374)
T 3uwc_A 99 GATPVLVDSENGYVIDPEKIEAAITDKTK----AIMPVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGS 174 (374)
T ss_dssp TCEEEEECBCTTSSBCGGGTGGGCCTTEE----EECCBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS
T ss_pred CCEEEEEecCCCCCcCHHHHHHhCCCCce----EEEEeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccc
Confidence 99999999998899999999998876321 222444556544 4431 2221 2
Q ss_pred CccEEEEcCc--ccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 581 YADSFNVNVN--KWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 581 ~aDSIs~d~H--K~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
.+|.+++++| |+++.+-..|+++.+++......-........ ..+.... .+..++...+..++.....++
T Consensus 175 ~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~aa~~~~~~~~ 246 (374)
T 3uwc_A 175 WGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLI----NRDVCVE----YGINCRMDTIQAVIANRLMNQ 246 (374)
T ss_dssp SSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEE----ETTEESS----CCCBCBCCHHHHHHHHHHGGG
T ss_pred cccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCcc----ccCcccc----ccccCCCCHHHHHHHHHHHHH
Confidence 2699999988 99976444666666655332211111110000 0000000 111223345556666667788
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC-cEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec----cc
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPR-FEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA----SQ 730 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~-~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s----~~ 730 (891)
+.+..++..++++++.+.|++.++ +++...+. .+.+.|.+... ....+.+.|.+.|+....+. ..
T Consensus 247 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~gi~v~~~~~~~~~~ 319 (374)
T 3uwc_A 247 LETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK-------YRDQLFQYLKDNGIEVKIHYPIAMHL 319 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET-------THHHHHHHHHHTTBCCBCSCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC-------CHHHHHHHHHHCCCccccCCCCcccc
Confidence 899999999999999999999888 88754332 12233443321 35678889999998643322 00
Q ss_pred ----c---------------CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 ----E---------------QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ----~---------------g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
. ....+ ++++.++|++|||+++++|+++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 368 (374)
T 3uwc_A 320 QPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFY 368 (374)
T ss_dssp SGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred ChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 0 11456 88899999999999999999876
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-10 Score=125.28 Aligned_cols=236 Identities=11% Similarity=0.012 Sum_probs=145.9
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
..|....+|..+.+++++++|.+.... ++++|+. .+...+..+. .
T Consensus 63 g~~~~~~~e~~ar~~la~~~g~~~~~i------------------------------~~~sGt~-a~~~~~~~~~-~--- 107 (407)
T 2dkj_A 63 GCEVIDRVESLAIERAKALFGAAWANV------------------------------QPHSGSQ-ANMAVYMALM-E--- 107 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEEC------------------------------CCSSHHH-HHHHHHHHHC-C---
T ss_pred CchHHHHHHHHHHHHHHHHhCCCcceE------------------------------EecchHH-HHHHHHHHhc-C---
Confidence 456556888888899999999864311 1235654 3333332221 1
Q ss_pred CCccccccccCCeEEEecCCCChHHH---HHHHHcCC--eEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVE---KAAMMAFV--RLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLG 204 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~---kaa~~~~~--~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~G 204 (891)
+.-.|+++..+|.+.. .++...|. ..+.++++ +++.+|+++|++.+++.. +.+|+++..
T Consensus 108 ----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-----~~~v~~~~p 172 (407)
T 2dkj_A 108 ----------PGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHR-----PKVIVAGAS 172 (407)
T ss_dssp ----------TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHC-----CSEEEECCS
T ss_pred ----------CCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcC-----CeEEEEecc
Confidence 1123777777887773 33323233 44445545 378999999999997521 234554333
Q ss_pred cCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHH
Q psy852 205 TTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQ 284 (891)
Q Consensus 205 tt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~ 284 (891)
+ .|.+.|+++|.++|+++|+++++|.+|++.....
T Consensus 173 ~--~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~------------------------------------------- 207 (407)
T 2dkj_A 173 A--YPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAA------------------------------------------- 207 (407)
T ss_dssp S--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT-------------------------------------------
T ss_pred c--cCCCCCHHHHHHHHHHcCCEEEEEcccccccccc-------------------------------------------
Confidence 3 3688999999999999999999999984311100
Q ss_pred HHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEE
Q psy852 285 AISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSF 364 (891)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~ 364 (891)
+.+ . . .+..+|.+
T Consensus 208 -----------------------------------------------~~~--------------~---~---~~~~~di~ 220 (407)
T 2dkj_A 208 -----------------------------------------------GLH--------------P---N---PLPYAHVV 220 (407)
T ss_dssp -----------------------------------------------TCS--------------C---C---CTTTCSEE
T ss_pred -----------------------------------------------Ccc--------------C---C---ccccccEE
Confidence 000 0 0 01125899
Q ss_pred EEeCCCcCCccCCceEEEEeccccchhhccc-CccccCCCCCCcccccccccCCCCCh-hHHHHHHHHHHhcHHHHHHHH
Q psy852 365 NVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYI 442 (891)
Q Consensus 365 ~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii 442 (891)
+.++||++.+|.+ |+++.+++.... .+.. ...+ . .++... ...++..+++.+..+++.++.
T Consensus 221 ~~s~sK~l~g~~~-G~~~~~~~~~~~-~l~~~~~~~--------------~-~~~~~~~~~~a~~~al~~~~~~~~~~~~ 283 (407)
T 2dkj_A 221 TSTTHKTLRGPRG-GLILSNDPELGK-RIDKLIFPG--------------I-QGGPLEHVIAGKAVAFFEALQPEFKEYS 283 (407)
T ss_dssp EEESSGGGCCCSC-EEEEESCHHHHH-HHHHHHTTT--------------T-CSSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEeccccCCCCCc-eEEEECCHHHHH-HHHhhhccc--------------c-cCCCcHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999888886 888887432221 1111 0000 0 011122 223556667766567899999
Q ss_pred HHHHHHHHHHHHhhccCCcccccc
Q psy852 443 RRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
++..++++++.+.|++. +++++.
T Consensus 284 ~~~~~~~~~l~~~L~~~-g~~~~~ 306 (407)
T 2dkj_A 284 RLVVENAKRLAEELARR-GYRIVT 306 (407)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEGG
T ss_pred HHHHHHHHHHHHHHHhC-Cceeec
Confidence 99999999999999887 777764
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=122.86 Aligned_cols=160 Identities=9% Similarity=-0.041 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSL 109 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~ 109 (891)
.+.+...+...+-+. ...|...+...+++..+.+++.+..|++.+. +.+ .++
T Consensus 56 ~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~-------------~~v--------------~~t 107 (406)
T 1xi9_A 56 PEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVEREKRKNGVDITP-------------DDV--------------RVT 107 (406)
T ss_dssp CHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-------------GGE--------------EEE
T ss_pred CHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCCH-------------HHE--------------EEc
Confidence 355555544443222 2223333445789999999999998876431 111 135
Q ss_pred cchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHH
Q psy852 110 GGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQ 187 (891)
Q Consensus 110 ~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~ 187 (891)
+||+......+..+ .. +...|+++..+|.++..++...|.+++.|++++ .+.+|+++|++.++
T Consensus 108 ~g~~~al~~~~~~l--~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 172 (406)
T 1xi9_A 108 AAVTEALQLIFGAL--LD-------------PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT 172 (406)
T ss_dssp SHHHHHHHHHHHHH--CC-------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC
T ss_pred CChHHHHHHHHHHh--CC-------------CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhC
Confidence 67654322222222 11 122478888899999998887788999999875 46799999999886
Q ss_pred hhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCCc
Q psy852 188 QDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 188 ~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+. +.+|+++..+|.+|.+-| +++|+++|+++|+++++|.+|+++.
T Consensus 173 ~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~ 220 (406)
T 1xi9_A 173 DR------TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMT 220 (406)
T ss_dssp TT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred cC------ceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccc
Confidence 53 346667778999999865 9999999999999999999996643
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-10 Score=124.82 Aligned_cols=157 Identities=11% Similarity=0.048 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSL 109 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~ 109 (891)
.+.+...+ ..+......|...+...+++..+.+++.+..|++... +.+ .++
T Consensus 58 ~~~v~~a~--~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-------------~~v--------------~~~ 108 (409)
T 2gb3_A 58 PEVFFERI--YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKP-------------ENV--------------LVT 108 (409)
T ss_dssp CTHHHHHH--HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG-------------GGE--------------EEE
T ss_pred CHHHHHHH--HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCH-------------HHE--------------EEe
Confidence 35555555 4443322233334446799999999999988875431 011 135
Q ss_pred cchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHH
Q psy852 110 GGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQ 187 (891)
Q Consensus 110 ~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~ 187 (891)
+||+......+..+ . . +...|+++..+|+++..++...|.+++.++.++ ...+ +++|+++++
T Consensus 109 ~g~t~a~~~~~~~~-~-~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~ 172 (409)
T 2gb3_A 109 NGGSEAILFSFAVI-A-N-------------PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN 172 (409)
T ss_dssp SHHHHHHHHHHHHH-C-C-------------TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC
T ss_pred CCHHHHHHHHHHHh-C-C-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC
Confidence 67764433222222 1 1 122477888899999998877778999999885 3345 888888775
Q ss_pred hhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccCC
Q psy852 188 QDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 188 ~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+. +.+|+++..+|.+|.+ +++++|+++|+++|+++++|.+|+++
T Consensus 173 ~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~ 219 (409)
T 2gb3_A 173 ER------TKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEI 219 (409)
T ss_dssp TT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred cC------CeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECccccc
Confidence 43 4566777889999998 45899999999999999999999653
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-09 Score=121.02 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=69.5
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.++..++ ...+.+++.++.+ |+++|++.+++. +.+|+++..+|.+|.+.|+++|++
T Consensus 105 ~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~ 173 (398)
T 2rfv_A 105 HIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVAG 173 (398)
T ss_dssp EEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTT------EEEEEEESSBTTTTBCCCHHHHHH
T ss_pred EEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHH
Confidence 4888889999998876 4567899999875 899999988653 457888899999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++|+|.+|+
T Consensus 174 l~~~~~~~li~De~~~ 189 (398)
T 2rfv_A 174 IAHQQGALLVVDNTFM 189 (398)
T ss_dssp HHHHTTCEEEEECTTT
T ss_pred HHHHcCCEEEEECCCc
Confidence 9999999999999884
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-09 Score=121.22 Aligned_cols=86 Identities=17% Similarity=0.107 Sum_probs=72.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.+...++...|.+++.+++++++.+|+++|++.+++.. ..+.+|+++. .+|..+|+++|.++|++
T Consensus 74 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~---~~~~~v~~~~---~~G~~~~l~~i~~l~~~ 147 (394)
T 1o69_A 74 IVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECE---KKPKALILTH---LYGNAAKMDEIVEICKE 147 (394)
T ss_dssp EEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCS---SCCCEEEEEC---GGGCCCCHHHHHHHHHH
T ss_pred EEEECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhccc---CCceEEEEEC---CCCChhhHHHHHHHHHH
Confidence 48888999999999888788899999999889999999999997621 0133455442 78999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|+|++
T Consensus 148 ~~~~li~Dea~~ 159 (394)
T 1o69_A 148 NDIVLIEDAAEA 159 (394)
T ss_dssp TTCEEEEECTTC
T ss_pred cCCEEEEECcCc
Confidence 999999999995
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-09 Score=118.47 Aligned_cols=281 Identities=10% Similarity=0.004 Sum_probs=168.3
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+.. + +++ +++||++++..++.+.+- .+.-.|+++..+|.+...++...
T Consensus 43 ~l~~~la~~~~~-~--~~~--~~~~gt~al~~~~~~~~~------------------~~gd~Vl~~~~~~~~~~~~~~~~ 99 (393)
T 1mdo_A 43 ELEAAFCRLTGN-Q--YAV--AVSSATAGMHIALMALGI------------------GEGDEVITPSMTWVSTLNMIVLL 99 (393)
T ss_dssp HHHHHHHHHHCC-S--EEE--EESCHHHHHHHHHHHTTC------------------CTTCEEEEESSSCHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-C--cEE--EecChHHHHHHHHHHcCC------------------CCCCEEEeCCCccHhHHHHHHHC
Confidence 344455555543 2 344 578899999988877520 01235888999999999998889
Q ss_pred CceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcCC-----------CC
Q psy852 527 FVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQGI-----------EY 581 (891)
Q Consensus 527 gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldGi-----------~~ 581 (891)
|.+++.+|.+++ +.+|+++|+++|++.+ ..++++...|... |.++ +|++ -.
T Consensus 100 g~~~~~v~~~~~~~~~d~~~l~~~l~~~~----~~v~~~~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~ 175 (393)
T 1mdo_A 100 GANPVMVDVDRDTLMVTPEHIEAAITPQT----KAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIG 175 (393)
T ss_dssp TCEEEEECBCTTTCCBCHHHHHHHCCTTE----EEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETT
T ss_pred CCEEEEEeccCCcCCCCHHHHHHhcCCCc----eEEEEeCCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecC
Confidence 999999999875 7899999999997532 1233344455543 4331 1211 01
Q ss_pred -ccEEEEcCc--ccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCc-cccCCccc---ccccccchHHHHHHHHH
Q psy852 582 -ADSFNVNVN--KWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI-DYRHWGIP---LSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 582 -aDSIs~d~H--K~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~-~~~~~ti~---~SRr~~aL~lW~~L~~l 654 (891)
.|.+++++| |++.++ ..|+++.++++.....-..............+ ....+... .+..++.-.+..++...
T Consensus 176 ~~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~ 254 (393)
T 1mdo_A 176 ARGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALA 254 (393)
T ss_dssp SSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHH
T ss_pred CCCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHH
Confidence 799999999 999764 45666665444332211111100000000000 00001110 01111112223333333
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV------RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
..+++++.+++..++++++.+.|++.+ +++...+ ...+++|++.+. ..+....++.+.|.+.|+....+.
T Consensus 255 ~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~l~~~l~~~gi~v~~~~ 330 (393)
T 1mdo_A 255 QLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEA---RCGITRDALMASLKTKGIGTGLHF 330 (393)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHH---HHSSCHHHHHHHHHHTTBCCBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEeccc---ccccCHHHHHHHHHhCCCCccccc
Confidence 456788888999999999999999887 8876433 224678887520 001135678899999998744322
Q ss_pred cc----------------c-----CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 SQ----------------E-----QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 ~~----------------~-----g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.. . ....+ ++++..+|++||++++++|+++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 383 (393)
T 1mdo_A 331 RAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 383 (393)
T ss_dssp CCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 11 0 12356 88998999999999999999876
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-09 Score=121.74 Aligned_cols=83 Identities=10% Similarity=0.020 Sum_probs=70.3
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|++...++...|.+++.+++++ ++.+|+++|++++++. +.+|+. ++.+|.+.|+++|+++|+
T Consensus 105 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~---~n~tG~~~~l~~i~~l~~ 175 (399)
T 2oga_A 105 EVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPR------TRALLP---VHLYGHPADMDALRELAD 175 (399)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTT------EEEECC---BCGGGCCCCHHHHHHHHH
T ss_pred EEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCC------CeEEEE---eCCcCCccCHHHHHHHHH
Confidence 477788899999998887788999999987 5899999999988653 234443 678999999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++++|+|++
T Consensus 176 ~~~~~li~Dea~~ 188 (399)
T 2oga_A 176 RHGLHIVEDAAQA 188 (399)
T ss_dssp HHTCEECEECTTC
T ss_pred HcCCEEEEECccc
Confidence 9999999999994
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8e-10 Score=121.58 Aligned_cols=267 Identities=12% Similarity=0.025 Sum_probs=160.3
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCC--CCC----ccccChhHHHHHHHHHHHHHHHcCCCCC-CCCCCCCCCCCCCCCC
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGC--IGF----SWAASPSCTELETIVLDWLGKAIGLPEK-FLMYPPQGKNATTPND 91 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~--~~~----~~~~~p~~~~~E~~~~~~l~~l~g~~~~-~~~~~~~~~g~~tp~~ 91 (891)
.|+.+..+.+..+.++..+...+.+. ++. ....+|...++-.++.+++++++|.+++ .. +
T Consensus 5 ~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~--------i----- 71 (362)
T 2c0r_A 5 AYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKV--------L----- 71 (362)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEE--------E-----
T ss_pred eeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEE--------E-----
Confidence 46667666777788888887765432 111 1223677777778999999999999753 10 0
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHH--HHHHHHcCCeEEEE
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCV--EKAAMMAFVRLKIL 169 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv--~kaa~~~~~~v~~V 169 (891)
.+++||+...+..+..+. . | .+ .|++....|++. ...+...| +++.|
T Consensus 72 ---------------~~t~g~t~a~~~~~~~l~--~----~--------gd-~vl~~~~~~~~~~~~~~~~~~g-~~~~v 120 (362)
T 2c0r_A 72 ---------------FIQGGASTQFAMIPMNFL--K----E--------GQ-TANYVMTGSWASKALKEAKLIG-DTHVA 120 (362)
T ss_dssp ---------------EESSHHHHHHHHHHHHHC--C----T--------TC-EEEEEECSHHHHHHHHHHHHHS-CEEEE
T ss_pred ---------------EECCCchHHHHHHHHhcC--C----C--------CC-eEEEEecCcHhHHHHHHHHHhC-CeEEE
Confidence 134677654443333331 1 1 11 244444556663 34445556 89999
Q ss_pred ecCC---CC-cccHHHHHHHHHhhhhcCCcceEEEeecccCccccc-cCHHHHHHHHHHcCCceeeeccccCCccccCCC
Q psy852 170 EPDD---KN-SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-DNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEF 244 (891)
Q Consensus 170 ~~d~---~g-~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-Dpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~ 244 (891)
+++. .+ .+|.++++ +.+ .+.+|+++..+|.+|.+ +|+++| +|+++|+|+||+
T Consensus 121 ~~~~~~~~~~~~~~~~~~--i~~------~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~--------- 177 (362)
T 2c0r_A 121 ASSEASNYMTLPKLQEIQ--LQD------NAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSD--------- 177 (362)
T ss_dssp EECGGGTTCSCCCGGGCC--CCT------TEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTT---------
T ss_pred ecccccccccCCCHHHcc--cCC------CcCEEEEeCCcCccceeccccccc------CCCEEEEEChhh---------
Confidence 9872 23 35776654 322 25688899999999994 998887 788888888772
Q ss_pred CccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccc
Q psy852 245 RPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQ 324 (891)
Q Consensus 245 ~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (891)
T Consensus 178 -------------------------------------------------------------------------------- 177 (362)
T 2c0r_A 178 -------------------------------------------------------------------------------- 177 (362)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhccc-CccccCCC
Q psy852 325 SYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHG 403 (891)
Q Consensus 325 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~-~~~y~~~~ 403 (891)
.+.. + . .+...|.+..++|||+ +|.+.|++++++.. ...+.. .+.|+...
T Consensus 178 ------------------~~~~--~-~-----~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~~--~~~l~~~~~~~~~~~ 228 (362)
T 2c0r_A 178 ------------------ILSR--P-F-----DLNQFGLVYAGAQKNL-GPSGVTVVIVREDL--VAESPKHLPTMLRYD 228 (362)
T ss_dssp ------------------TTSS--C-C-----CGGGCSEEEEETTTTT-CCSSCEEEEEEGGG--SSSCCTTSCGGGCHH
T ss_pred ------------------ccCC--c-c-----chhHCcEEEEeccccc-cCcCcEEEEEcHHH--HhhccccCchHHhHH
Confidence 1100 0 0 0112389999999988 58889999997642 111211 12221100
Q ss_pred CCCcccccccccCCCCC-hhHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCcc-ccc
Q psy852 404 HEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRF-EIS 465 (891)
Q Consensus 404 ~~~~~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~-eVv 465 (891)
. .. ......++-+ ....++..+++.+... |+.++.++..++++++.+.|.+.+++ +++
T Consensus 229 ~---~~-~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 289 (362)
T 2c0r_A 229 T---YV-KNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGC 289 (362)
T ss_dssp H---HH-HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEES
T ss_pred H---Hh-hccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 0 00 0001112222 2345667777776665 89999999999999999999887645 654
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-09 Score=121.06 Aligned_cols=159 Identities=9% Similarity=-0.009 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSL 109 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~ 109 (891)
.+.+...+...+ ......|...+...+++..+.+++.+..|.+... +.+ .++
T Consensus 56 ~~~v~~a~~~~~-~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~-------------~~v--------------~~~ 107 (389)
T 1o4s_A 56 PEPVVEEAVRFL-QKGEVKYTDPRGIYELREGIAKRIGERYKKDISP-------------DQV--------------VVT 107 (389)
T ss_dssp CHHHHHHHHHHH-TTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG-------------GGE--------------EEE
T ss_pred CHHHHHHHHHHH-hcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCH-------------HHE--------------EEe
Confidence 355544444333 3222233334456799999999999988875221 001 134
Q ss_pred cchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHH
Q psy852 110 GGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQ 187 (891)
Q Consensus 110 ~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~ 187 (891)
+||+.........+ .. +...|+++..+|+++..++...|.+++.++.++ ++.+|+++|+++++
T Consensus 108 ~g~t~al~~~~~~l--~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 172 (389)
T 1o4s_A 108 NGAKQALFNAFMAL--LD-------------PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV 172 (389)
T ss_dssp SHHHHHHHHHHHHH--CC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC
T ss_pred cCHHHHHHHHHHHh--CC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc
Confidence 67754332222222 11 112377778899999988887888999999885 46899999999886
Q ss_pred hhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCC
Q psy852 188 QDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 188 ~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+. +.+|+++..+|.+|.+-| +++|+++|+++|+++++|.+|+++
T Consensus 173 ~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 219 (389)
T 1o4s_A 173 GK------TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSL 219 (389)
T ss_dssp TT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS
T ss_pred cC------ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 53 346666788899999966 999999999999999999999653
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=123.69 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=68.5
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEE-ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKIL-EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V-~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~ 218 (891)
.|+++..+|.+...++ ...|.+++.+ +.+ |+++|+++|++. +.+|+++..+|.+|.+.|+++|+
T Consensus 99 ~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~ 167 (421)
T 2ctz_A 99 NIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-----RPEEFLALTDEK------TRAWWVESIGNPALNIPDLEALA 167 (421)
T ss_dssp EEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-----CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHH
Confidence 4888999999988876 4467788888 765 899999988753 45778899999999999999999
Q ss_pred HHHHHcCCceeeeccc
Q psy852 219 PVAKEFDVWLHVDGAY 234 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~ 234 (891)
++|+++|+++++|+|+
T Consensus 168 ~~a~~~g~~livD~~~ 183 (421)
T 2ctz_A 168 QAAREKGVALIVDNTF 183 (421)
T ss_dssp HHHHHHTCEEEEECGG
T ss_pred HHHHHcCCEEEEECCc
Confidence 9999999999999888
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.3e-09 Score=116.52 Aligned_cols=280 Identities=13% Similarity=0.120 Sum_probs=164.8
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+... +++ ++++|++++..++.+++... . .+ ..+.-.|+++..+|.+...++...|
T Consensus 39 l~~~la~~~~~~---~~i--~~~sGt~a~~~al~~~~~~~---~--------~~-~~~g~~Vi~~~~~~~~~~~~~~~~g 101 (390)
T 3b8x_A 39 YETQFAKTFGSK---YAV--MVSSGSTANLLMIAALFFTK---K--------PR-LKKGDEIIVPAVSWSTTYYPLQQYG 101 (390)
T ss_dssp HHHHHHHHHTCS---EEE--EESCHHHHHHHHHHHTTSSS---S--------CS-CCTTCEEEEESSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHCCC---cEE--EECCHHHHHHHHHHHHHhhh---h--------cC-CCCcCEEEECCCCcHHHHHHHHHcC
Confidence 334555555542 334 56788999998887764210 0 01 1123468899999999999998889
Q ss_pred ceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcCC--------------
Q psy852 528 VRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQGI-------------- 579 (891)
Q Consensus 528 v~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldGi-------------- 579 (891)
.+++.+|++++ +.+|+++|+++|++++ ..++++...|... |.++ +|.+
T Consensus 102 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~----~~v~~~~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~ 177 (390)
T 3b8x_A 102 LRVKFVDIDINTLNIDIESLKEAVTDST----KAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGT 177 (390)
T ss_dssp CEEEEECBCTTTCSBCHHHHHHHCCTTE----EEEEEECGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTS
T ss_pred CEEEEEecCccccCcCHHHHHHHhCcCC----eEEEEECCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCccccc
Confidence 99999999876 9999999999997532 2333344467664 4331 2221
Q ss_pred -CCccEEEEcCcccCCcccccEEEEEeCCccchh--hhccCC---C-------ccccCCCCCccccCCcccccc-cccch
Q psy852 580 -EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS--ALVVDP---L-------YLQHGHEGAIDYRHWGIPLSR-RFRSL 645 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~--~l~~~~---~-------Yl~~~~e~~~~~~~~ti~~SR-r~~aL 645 (891)
..+.++++..+|.+.+|.| |+++.+++..... .+.... . +.............+...+.+ +...+
T Consensus 178 ~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 256 (390)
T 3b8x_A 178 FGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEM 256 (390)
T ss_dssp SSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHH
T ss_pred ccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHH
Confidence 1123555444444555665 7777766432211 111100 0 000000000000011111111 23456
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-ceeE--EEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-RLGL--VCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~~i--V~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
..+..+.. .+.+++..++..++++++.+.|++++++++..++ ..+. +.+++.+.. +...+.+.+.|.+.|+
T Consensus 257 ~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~L~~~gI 330 (390)
T 3b8x_A 257 SGAIGIEQ--LKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDS----GVIRKQLVENLNSAGI 330 (390)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTS----CCCHHHHHHHHHHTTB
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcC----cccHHHHHHHHHHCCC
Confidence 66666554 4677888999999999999999999899887543 3333 444554210 1135678889988998
Q ss_pred EEEe---eccccC----------------------CeEE-EEecCCCCHHHHHHHHHHH
Q psy852 723 LHMV---PASQEQ----------------------NDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 723 ~~~s---~s~~~g----------------------~~~l-~sv~~~tT~edId~li~~L 755 (891)
.... ++.+.. ...+ +++++.+|++|||+++++|
T Consensus 331 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 331 ECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp CCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred CeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 7543 221111 0257 8899999999999999876
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-09 Score=118.01 Aligned_cols=158 Identities=9% Similarity=0.041 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..|.+...+...+- .....+. +...+++..+.+++++.+|.+... +.+ .+
T Consensus 46 ~~~~v~~a~~~~~~-~~~~~y~--~~~~~~~~~l~~~l~~~~g~~~~~-------------~~v--------------~~ 95 (391)
T 4dq6_A 46 AAPCIIDSLKNRLE-QEIYGYT--TRPDSYNESIVNWLYRRHNWKIKS-------------EWL--------------IY 95 (391)
T ss_dssp CCHHHHHHHHHHHT-TCCCCCB--CCCHHHHHHHHHHHHHHHCCCCCG-------------GGE--------------EE
T ss_pred CCHHHHHHHHHHHh-CCCCCCC--CCCHHHHHHHHHHHHHHhCCCCcH-------------HHe--------------EE
Confidence 34666655554443 2222222 233789999999999999964321 001 13
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC--CC--CcccHHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DK--NSLRGATLRQ 184 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~--g~id~~~L~~ 184 (891)
++||+...+..+..+ . . +.-.|++...+|.+...++...+.+++.++.+ ++ +.+|+++|++
T Consensus 96 ~~g~~~a~~~~~~~~-~-~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~ 160 (391)
T 4dq6_A 96 SPGVIPAISLLINEL-T-K-------------ANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIEN 160 (391)
T ss_dssp ESCHHHHHHHHHHHH-S-C-------------TTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHH
T ss_pred cCChHHHHHHHHHHh-C-C-------------CCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHH
Confidence 567764333222222 1 1 11247888899999999888788899999987 33 4599999999
Q ss_pred HHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 185 VMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 185 ~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
++++ +.+|+++..+|.+|.+ +++++|+++|+++|+++++|.||+++.
T Consensus 161 ~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 210 (391)
T 4dq6_A 161 KIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDII 210 (391)
T ss_dssp HCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred Hhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccc
Confidence 8875 3467777789999999 889999999999999999999996543
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-08 Score=115.39 Aligned_cols=83 Identities=13% Similarity=0.007 Sum_probs=70.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.+++|+ ++.+|+++|++.+++. +.+|+++ +.+|.++|+++|+++|+
T Consensus 92 ~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~---~~tG~~~~l~~i~~la~ 162 (424)
T 2po3_A 92 EVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPR------TSAVVGV---HLWGRPCAADQLRKVAD 162 (424)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTT------EEEEEEE---CGGGCCCCHHHHHHHHH
T ss_pred EEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcC------CcEEEEE---CCCCCcCCHHHHHHHHH
Confidence 388888999999998887888999999986 7889999999888643 2344443 47899999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++++|+|++
T Consensus 163 ~~~~~li~Dea~~ 175 (424)
T 2po3_A 163 EHGLRLYFDAAHA 175 (424)
T ss_dssp HTTCEEEEECTTC
T ss_pred HcCCEEEEECccc
Confidence 9999999999995
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-09 Score=123.28 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=68.2
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.++...+ ...+.+++.++.+ |+++|++.+++. +.+|+++..+|.+|.+.|+++|++
T Consensus 106 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~ 174 (398)
T 1gc0_A 106 EVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPA------TRVIYFESPANPNMHMADIAGVAK 174 (398)
T ss_dssp EEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCcccccHHHHHH
Confidence 4888889999988776 2356788888764 899999988653 468888999999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++|+|.+|+
T Consensus 175 l~~~~~~~li~D~~~~ 190 (398)
T 1gc0_A 175 IARKHGATVVVDNTYC 190 (398)
T ss_dssp HHGGGTCEEEEECTTT
T ss_pred HHHHcCCEEEEECCCc
Confidence 9999999999999883
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-09 Score=132.06 Aligned_cols=259 Identities=11% Similarity=0.029 Sum_probs=165.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-----CCc-
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-----NSL- 541 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-----G~m- 541 (891)
+++|++++|..++.+... +.-.|+++..+|.|+..++.+.|.+++.+|.+.+ |.+
T Consensus 226 ~~~Gtt~a~~~~i~al~~-------------------~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~g~i~ 286 (755)
T 2vyc_A 226 VVVGTSGSNRTIMQACMT-------------------DNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIY 286 (755)
T ss_dssp ESSHHHHHHHHHHHHHCC-------------------TTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCBCCCC
T ss_pred ECCcHHHHHHHHHHHhcC-------------------CCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCccccccccC
Confidence 466777888888776411 1235889999999999999888999999988643 456
Q ss_pred ----CHHHHHHHHHhh--h--hcCCcc--EEEEec--CCccc--------hhhh-----hc-----------------CC
Q psy852 542 ----RGATLRQVMQQD--E--TMGYIP--FFVSTT--LGTTS--------CYRK-----SQ-----------------GI 579 (891)
Q Consensus 542 ----D~~~Le~aI~~d--~--~~g~ip--~~Vvat--aGTT~--------c~~~-----ld-----------------Gi 579 (891)
|+++|+++|++. + +.+..| +++++. .|+.. |+++ +| .+
T Consensus 287 ~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~ 366 (755)
T 2vyc_A 287 PQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAM 366 (755)
T ss_dssp GGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSS
T ss_pred cCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchh
Confidence 999999999863 1 123333 233322 24332 3321 11 11
Q ss_pred CC--ccE------EEEcCcccCCcccccEEEEEeCCc-cc-hhhhccCCCccccCCCCCccccCCcccccccccchHHHH
Q psy852 580 EY--ADS------FNVNVNKWLLTAFDSSCLWVADRY-KL-TSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWF 649 (891)
Q Consensus 580 ~~--aDS------Is~d~HK~L~~P~g~G~llvR~~~-~L-~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~ 649 (891)
.. +|. ++.++||++++|.++|++++++.. .+ ...+......+.. .+.. -.....+-.
T Consensus 367 ~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s----------~sp~---~~~iaal~a 433 (755)
T 2vyc_A 367 RGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHAT----------TSPL---YAICASNDV 433 (755)
T ss_dssp CSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHTSC----------SSCC---HHHHHHHHH
T ss_pred cCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHhCC----------CCHH---HHHHHHHHH
Confidence 24 788 999999999999999999998761 11 0111100000000 0000 011123334
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC---------cEEeCCCc------------------------------
Q psy852 650 VIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPR---------FEISNDVR------------------------------ 690 (891)
Q Consensus 650 ~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~---------~eil~~~~------------------------------ 690 (891)
+++.+..+|..+.+++..++++++.++|+++++ |+++.+..
T Consensus 434 A~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (755)
T 2vyc_A 434 AVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMH 513 (755)
T ss_dssp HHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccC
Confidence 555555565678899999999999999998877 77776431
Q ss_pred -------------------eeEEEEEecCCcc----hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHH
Q psy852 691 -------------------LGLVCFRLRSENN----LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKD 746 (891)
Q Consensus 691 -------------------~~iV~Fr~~~~~~----~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~e 746 (891)
...|+|..++.+. ++..-....+.+.|.+.|+. ....+.+.+ ++++..+|++
T Consensus 514 ~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~----~e~~~~~~v~~~~~~g~t~~ 589 (755)
T 2vyc_A 514 PGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIV----PTRTTDFQIMFLFSMGVTRG 589 (755)
T ss_dssp TTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCC----CSEECSSEEEEECCTTCCTT
T ss_pred cccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCE----EeecCCCeEEEEECCCCCHH
Confidence 2477887764321 01122335777888888876 233355566 9899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy852 747 DLAYKRSFFVRMLGLV 762 (891)
Q Consensus 747 dId~li~~L~ei~~~~ 762 (891)
++++++++|+++....
T Consensus 590 ~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 590 KWGTLVNTLCSFKRHY 605 (755)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999987533
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.3e-09 Score=117.86 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..+.+...+...+-+.....|.......+++..+.+++.+..|++... +.+ .+
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~-------------~~i--------------~~ 110 (437)
T 3g0t_A 58 APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPA-------------RAC--------------VP 110 (437)
T ss_dssp CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-------------GGE--------------EE
T ss_pred CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCc-------------ccE--------------EE
Confidence 345555555444332111222222234689999999999988876331 111 14
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCC-cccHHHHHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN-SLRGATLRQVMQ 187 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g-~id~~~L~~~l~ 187 (891)
++||+...+..+..+.+...+. +..|+++.-+|.++..++...+.+++.|+++++| .+|+++|+++++
T Consensus 111 t~g~t~al~~~~~~l~~~~~gd-----------~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~ 179 (437)
T 3g0t_A 111 TVGSMQGCFVSFLVANRTHKNR-----------EYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQ 179 (437)
T ss_dssp ESHHHHHHHHHHHHHTTSCTTC-----------SCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHT
T ss_pred eCCHHHHHHHHHHHHhcCCCCC-----------ccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHh
Confidence 5677643332222221001110 0037777889999999887777899999997544 799999999994
Q ss_pred hhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCCc
Q psy852 188 QDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 188 ~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
... +.+|+++..+|.+|.+-| +++|+++|+++|+++++|.+|+++.
T Consensus 180 ~~~-----~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~ 228 (437)
T 3g0t_A 180 TGQ-----FCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMD 228 (437)
T ss_dssp TTC-----CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCC
T ss_pred cCC-----ceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcc
Confidence 321 346666777999999987 7778999999999999999996543
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-09 Score=118.61 Aligned_cols=137 Identities=10% Similarity=0.082 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC-CccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccC
Q psy852 53 PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPN-DIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH 131 (891)
Q Consensus 53 p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~-~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~ 131 (891)
+...++++.+.+++.+.+|.+.+. + .+ .+++||+......+..+ ..
T Consensus 67 ~g~~~l~~~la~~l~~~~g~~~~~-------------~~~v--------------~~~~g~~~a~~~~~~~~--~~---- 113 (386)
T 1u08_A 67 TGVQALREAIAQKTERLYGYQPDA-------------DSDI--------------TVTAGATEALYAAITAL--VR---- 113 (386)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCCT-------------TTTE--------------EEESSHHHHHHHHHHHH--CC----
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-------------CCCE--------------EEcCChHHHHHHHHHHh--CC----
Confidence 346789999999999998875321 0 01 13567754322222222 11
Q ss_pred CccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc
Q psy852 132 PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS 210 (891)
Q Consensus 132 ~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga 210 (891)
+...|+++.-+|++...++...+.+++.++.+. ++.+|+++|++++.+. +.+|+++..+|.+|.
T Consensus 114 ---------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~ 178 (386)
T 1u08_A 114 ---------NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSER------TRLVILNTPHNPSAT 178 (386)
T ss_dssp ---------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTT------EEEEEEESSCTTTCC
T ss_pred ---------CCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhccc------CEEEEEeCCCCCCCc
Confidence 112377777889999888877788999999976 5789999999988533 346667788999999
Q ss_pred ccC---HHHHHHHHHHcCCceeeeccccCC
Q psy852 211 FDN---LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 211 vDp---l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+-| +++|+++|+++|+++++|.+|+++
T Consensus 179 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 208 (386)
T 1u08_A 179 VWQQADFAALWQAIAGHEIFVISDEVYEHI 208 (386)
T ss_dssp CCCHHHHHHHHHHHTTSCCEEEEECTTTTC
T ss_pred cCCHHHHHHHHHHHHHcCcEEEEEcccccc
Confidence 976 689999999999999999999664
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-09 Score=119.52 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSL 109 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~ 109 (891)
.|.+...+...+-+ ....|...+...+++..+.+++.+.+|++.... + .+ .++
T Consensus 40 ~~~v~~a~~~~~~~-~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~------~------~v--------------~~t 92 (411)
T 2o0r_A 40 PPKMLQAAQDAIAG-GVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPE------T------EV--------------LVT 92 (411)
T ss_dssp CHHHHHHHHHHHHT-TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTT------T------SE--------------EEE
T ss_pred CHHHHHHHHHHHhc-CCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCC------c------eE--------------EEe
Confidence 35554444433322 222333334457899999999999999753210 0 01 135
Q ss_pred cchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC---CcccHHHHHHHH
Q psy852 110 GGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK---NSLRGATLRQVM 186 (891)
Q Consensus 110 ~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~---g~id~~~L~~~l 186 (891)
+||+.... .++.... . +...|+++..+|+++..++...|.+++.++.+++ +.+|+++|++.+
T Consensus 93 ~g~~~al~-~~~~~~~-~-------------~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l 157 (411)
T 2o0r_A 93 VGATEAIA-AAVLGLV-E-------------PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAV 157 (411)
T ss_dssp EHHHHHHH-HHHHHHC-C-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHC
T ss_pred CCHHHHHH-HHHHHhc-C-------------CCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhh
Confidence 67754322 2222211 1 1124777888999998888777889999998754 679999999988
Q ss_pred HhhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCCc
Q psy852 187 QQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 187 ~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
++. +.+|+++..+|.+|.+-| +++|+++|+++|+++++|.+|+++.
T Consensus 158 ~~~------~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 206 (411)
T 2o0r_A 158 TPR------TRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLV 206 (411)
T ss_dssp CTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred ccC------ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 643 346667788999999966 5899999999999999999996543
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-09 Score=116.67 Aligned_cols=137 Identities=10% Similarity=-0.040 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcc
Q psy852 55 CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFV 134 (891)
Q Consensus 55 ~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~ 134 (891)
..+++..+.+++++.+|++.+. +.+ .+++||+......+..+ . .
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~-------------~~v--------------~~t~g~~~a~~~~~~~l-~-~------- 111 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQT-------------DWI--------------INTAGVVPAVFNAVREF-T-K------- 111 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCG-------------GGE--------------EEESSHHHHHHHHHHHH-C-C-------
T ss_pred cHHHHHHHHHHHHHHhCCCCCh-------------hhE--------------EEcCCHHHHHHHHHHHh-c-C-------
Confidence 6789999999999988865321 001 13567764332222222 1 1
Q ss_pred ccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC-CCC--cccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 135 DEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKN--SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 135 ~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g--~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
+...|++..-+|.+...++...+.+++.+|.+ ++| .+|+++|++++++.. +.+|+++..+|.+|.+
T Consensus 112 ------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~ 180 (399)
T 1c7n_A 112 ------PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKN-----NKALLFCSPHNPVGRV 180 (399)
T ss_dssp ------TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTT-----EEEEEEESSBTTTTBC
T ss_pred ------CCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCC-----CcEEEEcCCCCCCCcC
Confidence 12247778889999988887778899999986 444 699999999997321 3466667889999999
Q ss_pred cC---HHHHHHHHHHcCCceeeeccccCCc
Q psy852 212 DN---LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 212 Dp---l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
-| +++|+++|+++|+++++|.+|+++.
T Consensus 181 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 210 (399)
T 1c7n_A 181 WKKDELQKIKDIVLKSDLMLWSDEIHFDLI 210 (399)
T ss_dssp CCHHHHHHHHHHHHHSSCEEEEECTTTTCB
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 98 9999999999999999999996643
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.6e-09 Score=114.89 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=74.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i 220 (891)
.|+++..+|.+...++...+.+++.+++++++.+|+++|++.+++.. +.+|+++..+|.+|.+ +++++|+++
T Consensus 111 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~~~~~~l~~i~~~ 185 (367)
T 3euc_A 111 KVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQ-----PAIVYLAYPNNPTGNLFDAADMEAIVRA 185 (367)
T ss_dssp EEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHC-----CSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccC-----CCEEEEcCCCCCCCCCCCHHHHHHHHHh
Confidence 36777778888888887778899999999999999999999998731 3467777889999999 567788888
Q ss_pred HHHc--CCceeeeccccC
Q psy852 221 AKEF--DVWLHVDGAYAG 236 (891)
Q Consensus 221 ~~~~--~~~lHvDaA~GG 236 (891)
|+++ |+++++|.+|++
T Consensus 186 ~~~~~~~~~li~De~~~~ 203 (367)
T 3euc_A 186 AQGSVCRSLVVVDEAYQP 203 (367)
T ss_dssp TBTTSCBCEEEEECTTCC
T ss_pred hhhcCCCcEEEEeCcchh
Confidence 9999 999999999965
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-09 Score=122.50 Aligned_cols=81 Identities=6% Similarity=0.015 Sum_probs=68.8
Q ss_pred EEEecCCCChHHHH----HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~k----aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+... .+...+.+++.|+.+ |+++|++++++. +.+|.+...+|.+|.+.|+++|++
T Consensus 123 ~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-----d~~~l~~ai~~~------t~~v~~e~p~NptG~~~dl~~i~~ 191 (430)
T 3ri6_A 123 SVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-----DSLAVEHACDET------TKLLFLETISNPQLQVADLEALSK 191 (430)
T ss_dssp EEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhhCCC------CeEEEEECCCCCCCeecCHHHHHH
Confidence 48888899998877 444567899999876 899999988754 357888889999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++++|.||+
T Consensus 192 la~~~g~~livD~a~~ 207 (430)
T 3ri6_A 192 VVHAKGIPLVVDTTMT 207 (430)
T ss_dssp HHHTTTCCEEEECTTS
T ss_pred HHHHcCCEEEEECCCc
Confidence 9999999999998884
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-09 Score=115.05 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC
Q psy852 53 PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP 132 (891)
Q Consensus 53 p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~ 132 (891)
+...++++.+.+++.+..|++.+. +.+ .+++||+.. +...+.....
T Consensus 75 ~~~~~l~~~la~~~~~~~g~~~~~-------------~~v--------------~~t~g~t~a-~~~~~~~~~~------ 120 (407)
T 2zc0_A 75 NGIPELREELAAFLKKYDHLEVSP-------------ENI--------------VITIGGTGA-LDLLGRVLID------ 120 (407)
T ss_dssp TCCHHHHHHHHHHHHHHSCCCCCG-------------GGE--------------EEESHHHHH-HHHHHHHHCC------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCc-------------ceE--------------EEecCHHHH-HHHHHHHhcC------
Confidence 346789999999998888865321 001 135677643 3222222211
Q ss_pred ccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEE-EeecccCccccc
Q psy852 133 FVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV-STTLGTTSCCSF 211 (891)
Q Consensus 133 ~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V-~~t~Gtt~~Gav 211 (891)
+.-.|++..-+|++...++...|.+++.++++++| +|+++|++.++.....+..+.+| +....+|.+|.+
T Consensus 121 --------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~ 191 (407)
T 2zc0_A 121 --------PGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVT 191 (407)
T ss_dssp --------TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC
T ss_pred --------CCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcC
Confidence 11237777788999988887778899999998876 99999999998432122224444 577789999999
Q ss_pred cCHH---HHHHHHHHcCCceeeeccccCC
Q psy852 212 DNLA---EIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 212 Dpl~---~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
.|++ +|+++|+++|+++++|.+|+++
T Consensus 192 ~~~~~l~~i~~~~~~~~~~li~De~~~~~ 220 (407)
T 2zc0_A 192 MSMERRKALLEIASKYDLLIIEDTAYNFM 220 (407)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTS
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 9997 9999999999999999999764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.2e-09 Score=115.97 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=74.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.++..++...+.+++.++. +|+++|++.+++....|..+.+|+++..+|.+|.+.|+++|.++|++
T Consensus 131 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 205 (401)
T 1fc4_A 131 AIISDALNHASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADK 205 (401)
T ss_dssp EEEEETTCCHHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHH
T ss_pred EEEEcchhHHHHHHHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHH
Confidence 4778888999999888877888888873 58999999998643333346688889999999999999999999999
Q ss_pred cCCceeeecccc-CC
Q psy852 224 FDVWLHVDGAYA-GS 237 (891)
Q Consensus 224 ~~~~lHvDaA~G-G~ 237 (891)
+|+++++|.+|+ |+
T Consensus 206 ~~~~li~De~~~~g~ 220 (401)
T 1fc4_A 206 YDALVMVDDSHAVGF 220 (401)
T ss_dssp TTEEEEEECTTTTTT
T ss_pred cCCEEEEECcccccc
Confidence 999999999995 53
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-09 Score=116.18 Aligned_cols=272 Identities=11% Similarity=0.059 Sum_probs=166.2
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+... +++ ++++|++++..++.+++. .+.-.|+++..+|.+...++...
T Consensus 67 ~l~~~la~~~~~~---~~v--~~~~Gt~a~~~~l~~~~~------------------~~gd~vl~~~~~~~~~~~~~~~~ 123 (399)
T 2oga_A 67 GFEAEFAAYCETD---HAV--GVNSGMDALQLALRGLGI------------------GPGDEVIVPSHTYIASWLAVSAT 123 (399)
T ss_dssp HHHHHHHHHTTSS---EEE--EESCHHHHHHHHHHHTTC------------------CTTCEEEEESSSCTHHHHHHHHT
T ss_pred HHHHHHHHHHCCC---eEE--EecCHHHHHHHHHHHhCC------------------CCcCEEEECCCccHHHHHHHHHC
Confidence 3444555555442 333 456779998888766520 01225788888999999998888
Q ss_pred CceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hc-----CC--------
Q psy852 527 FVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQ-----GI-------- 579 (891)
Q Consensus 527 gv~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ld-----Gi-------- 579 (891)
|.+++.+|.++ ++.+|+++|+++|++.++ .+++++..|... |.++ +| |.
T Consensus 124 g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~----~v~~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~ 199 (399)
T 2oga_A 124 GATPVPVEPHEDHPTLDPLLVEKAITPRTR----ALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIG 199 (399)
T ss_dssp TCEEEEECBCSSSSSBCHHHHHHHCCTTEE----EECCBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETT
T ss_pred CCEEEEEecCCCCCCcCHHHHHHhcCCCCe----EEEEeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecc
Confidence 99999999986 589999999999975321 222344455543 4331 11 11
Q ss_pred CCccEEEEcCc--ccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 580 EYADSFNVNVN--KWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 580 ~~aDSIs~d~H--K~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
...|.+++++| |+++.|-..|++++++++.+...-..... +....+. ........+...+..|+.+.. .+
T Consensus 200 ~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~----g~~~~~~--~~~~g~~~~~~~~~~a~~~~~--l~ 271 (399)
T 2oga_A 200 AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNY----GSRQKYS--HETKGTNSRLDEMQAAVLRIR--LA 271 (399)
T ss_dssp CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBT----TCSSTTC--CCSCCCBCCCCHHHHHHHHHH--HH
T ss_pred cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhc----Ccccccc--ccccccCCCcCHHHHHHHHHH--HH
Confidence 12588889985 99986445666666655432211110000 0000000 000111123345555555443 34
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-ee-E-EEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-c-c-
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-LG-L-VCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS-Q-E- 731 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-~~-i-V~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~-~-~- 731 (891)
.+.+..++..++++++.+.|++++++++...+. .+ + +.|.+... ...++.+.|.++|+.+..... . .
T Consensus 272 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~gI~v~~~~~~~~~~ 344 (399)
T 2oga_A 272 HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTE-------RRDELRSHLDARGIDTLTHYPVPVHL 344 (399)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECS-------SHHHHHHHHHHTTBCCBCSCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECC-------CHHHHHHHHHHCCCceecCCCCcccc
Confidence 566777888899999999999988888754432 22 2 23555322 346788889899987543221 0 0
Q ss_pred -------C-------------CeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 -------Q-------------NDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 -------g-------------~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ ..++ ++++..+|++||++++++|+++++
T Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 394 (399)
T 2oga_A 345 SPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAE 394 (399)
T ss_dssp SHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred chhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 0 2457 999999999999999999998763
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-09 Score=122.26 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=68.1
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.++...+ ...|.+++.|+.+ |+++|+++|++.+ +.+|++...+|.+|.+.|+++|++
T Consensus 155 ~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~ai~~~t-----v~lV~le~p~NptG~v~dl~~I~~ 224 (445)
T 1qgn_A 155 HIVTTTDCYRKTRIFIETILPKMGITATVIDPA-----DVGALELALNQKK-----VNLFFTESPTNPFLRCVDIELVSK 224 (445)
T ss_dssp EEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHHSC-----EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhccCC-----CCEEEEeCCCCCCCcccCHHHHHH
Confidence 3777888898887754 2357789999875 8999999998642 257888899999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++|+|.+|+
T Consensus 225 la~~~g~~livD~a~~ 240 (445)
T 1qgn_A 225 LCHEKGALVCIDGTFA 240 (445)
T ss_dssp HHHHTTCEEEEECTTT
T ss_pred HHHHcCCEEEEECCCc
Confidence 9999999999998883
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.2e-08 Score=108.36 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=76.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|++...+|.++..++...|.+++.++.|+++.+|+++|++++++.. +.+|+++..+|.+|.+.|++++.++|+.
T Consensus 118 ~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~nptG~~~~~~~l~~l~~~ 192 (369)
T 3cq5_A 118 TALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQ-----PDIVFVTTPNNPTGDVTSLDDVERIINV 192 (369)
T ss_dssp EEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHC-----CSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 37777889999998887778899999998888999999999997621 3466678899999999999999999999
Q ss_pred cCCceeeeccccCC
Q psy852 224 FDVWLHVDGAYAGS 237 (891)
Q Consensus 224 ~~~~lHvDaA~GG~ 237 (891)
+++++++|.+|+++
T Consensus 193 ~~~~li~De~~~~~ 206 (369)
T 3cq5_A 193 APGIVIVDEAYAEF 206 (369)
T ss_dssp CSSEEEEECTTGGG
T ss_pred CCCEEEEECCchhh
Confidence 99999999999543
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.6e-09 Score=116.96 Aligned_cols=266 Identities=9% Similarity=-0.012 Sum_probs=166.1
Q ss_pred HHHHHHHhhc--cCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 448 LAKLFEGKVR--RDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 448 lAr~l~~~L~--~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
+++++.+... ..+. +|+ +++|+++++..++.+... +.-.|+++..+|.+...++..
T Consensus 71 la~~l~~~~g~~~~~~-~i~--~~~g~~~a~~~~~~~l~~-------------------~gd~vl~~~~~~~~~~~~~~~ 128 (391)
T 3dzz_A 71 VADWEEIEHRARPKED-WCV--FASGVVPAISAMVRQFTS-------------------PGDQILVQEPVYNMFYSVIEG 128 (391)
T ss_dssp HHHHHHHHHSCCCCGG-GEE--EESCHHHHHHHHHHHHSC-------------------TTCEEEECSSCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHH-HEE--ECCCHHHHHHHHHHHhCC-------------------CCCeEEECCCCcHHHHHHHHH
Confidence 3445544433 2222 555 788999999988776411 123588899999999999999
Q ss_pred cCceEEEecCC-CC--CCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc------
Q psy852 526 AFVRLKILEPD-DK--NSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ------ 577 (891)
Q Consensus 526 ~gv~v~~Vp~d-~~--G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld------ 577 (891)
.|.+++.+|.+ ++ +.+|+++|+++|++. +...++++. ..|+.. |.++ +|
T Consensus 129 ~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 205 (391)
T 3dzz_A 129 NGRRVISSDLIYENSKYSVNWADLEEKLATP---SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDL 205 (391)
T ss_dssp TTCEEEECCCEEETTEEECCHHHHHHHHTST---TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred cCCEEEEeeeeecCCceeecHHHHHHHHhcc---CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 99999999985 23 459999999999732 111223322 245552 3331 11
Q ss_pred ---C--------C--CCcc--EEEEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc
Q psy852 578 ---G--------I--EYAD--SFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR 641 (891)
Q Consensus 578 ---G--------i--~~aD--SIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr 641 (891)
| + +..| .+..++||+++ ....+|+++.++++.... +....... ..++ .-.
T Consensus 206 ~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~-~~~~~~~~----------~~~~---~~~ 271 (391)
T 3dzz_A 206 VLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRAR-AEESFFLA----------GIGE---PNL 271 (391)
T ss_dssp BCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHH-HHHHHHHH----------TCSS---CCT
T ss_pred cCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHH-HHHHHHhh----------ccCC---CCH
Confidence 1 1 1146 88899999996 456789998875543322 21100000 0000 001
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-h
Q psy852 642 FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-A 719 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~ 719 (891)
.....+..+++. +.+.+++..++..++++++.+.|++ ++++++..+.....++++++.. ......+.+.|. +
T Consensus 272 ~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~ 345 (391)
T 3dzz_A 272 LAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISAL-----GMNAEDFCKYLREK 345 (391)
T ss_dssp THHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGG-----CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhc-----CCCHHHHHHHHHHh
Confidence 111222233332 3455788888889999999999998 8999987655445556777532 124567888885 7
Q ss_pred CCcEEEeecccc--CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 720 SGRLHMVPASQE--QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 720 ~G~~~~s~s~~~--g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.|+.+..+.... +...+ ++++ +++++|+++++.|++++.
T Consensus 346 ~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 387 (391)
T 3dzz_A 346 TGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGVL 387 (391)
T ss_dssp HCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 898765544332 23566 8877 689999999999998763
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-08 Score=113.04 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=73.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.++..++...+.+++.++.| |+++|++.++.... ..+.+|+++..+|.+|.+.|+++|+++|++
T Consensus 134 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 206 (401)
T 2bwn_A 134 IIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAEE 206 (401)
T ss_dssp EEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred EEEECchhhHHHHHHHHHcCCeEEEEcCC-----CHHHHHHHHHhhcc--CCceEEEEecCcCCCCCcCCHHHHHHHHHH
Confidence 47888899999999988778899999976 78999998875321 135688999999999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.|++
T Consensus 207 ~~~~li~Dea~~ 218 (401)
T 2bwn_A 207 FGALTYIDEVHA 218 (401)
T ss_dssp HTCEEEEECTTT
T ss_pred cCCEEEEecccc
Confidence 999999999995
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9.2e-09 Score=115.28 Aligned_cols=84 Identities=21% Similarity=0.153 Sum_probs=72.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++...|.+...++...+.+++.++. +|+++|++.+++.. +.+|+++..++.+|.+.|+++|+++|++
T Consensus 145 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~-----~~~vi~~~~~nptG~~~~l~~l~~la~~ 214 (409)
T 3kki_A 145 NVYIDFFAHMSLWEGARYANAQAHPFMH-----NNCDHLRMLIQRHG-----PGIIVVDSIYSTLGTIAPLAELVNISKE 214 (409)
T ss_dssp EEEEETTSCHHHHHHHHHTTCEEEEECT-----TCHHHHHHHHHHHC-----SCEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred EEEECCCcCHHHHHHHHHcCCeEEEecC-----CCHHHHHHHHHhcC-----CeEEEECCCCCCCCCcCCHHHHHHHHHH
Confidence 4788899999999998887878877764 68999999998642 3588888899999999999999999999
Q ss_pred cCCceeeeccccCC
Q psy852 224 FDVWLHVDGAYAGS 237 (891)
Q Consensus 224 ~~~~lHvDaA~GG~ 237 (891)
+|++|++|.++++.
T Consensus 215 ~~~~li~De~~~~g 228 (409)
T 3kki_A 215 FGCALLVDESHSLG 228 (409)
T ss_dssp HTCEEEEECTTTTT
T ss_pred cCCEEEEECCcccc
Confidence 99999999999653
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-09 Score=115.98 Aligned_cols=84 Identities=11% Similarity=0.130 Sum_probs=58.8
Q ss_pred EEEecCCCChHHHHHH---HH--cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA---MM--AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa---~~--~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~ 218 (891)
.|+++..+|.+..... .. .....+.+++|++|.+|+++|++++++.. +.+|+++.+++ |...|+++|+
T Consensus 118 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~l~ 190 (420)
T 3gbx_A 118 TVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHK-----PKMIIGGFSAY--SGVVDWAKMR 190 (420)
T ss_dssp EEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHC-----CSEEEECCTTC--CSCCCHHHHH
T ss_pred EEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcC-----CeEEEEecCcc--CCccCHHHHH
Confidence 4777777888754221 12 12456677888889999999999998742 34666655544 6789999999
Q ss_pred HHHHHcCCceeeeccc
Q psy852 219 PVAKEFDVWLHVDGAY 234 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~ 234 (891)
++|+++|+++++|.++
T Consensus 191 ~l~~~~~~~li~De~~ 206 (420)
T 3gbx_A 191 EIADSIGAYLFVDMAH 206 (420)
T ss_dssp HHHHHTTCEEEEECTT
T ss_pred HHHHHcCCEEEEECCc
Confidence 9999999999999997
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-08 Score=114.88 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=72.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-+|.+...++...|.+++.++++++ +.+|+++|++.+++. +.+|+++..+|.+|.+.| +++|+
T Consensus 130 ~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~ 203 (416)
T 1bw0_A 130 YALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGSNFSRKHVEDIV 203 (416)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccC------CeEEEEeCCCCCCCcccCHHHHHHHH
Confidence 3777778899998888777889999998754 679999999988643 235666667899999999 99999
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++|++|++|.+|++
T Consensus 204 ~~~~~~~~~li~De~~~~ 221 (416)
T 1bw0_A 204 RLAEELRLPLFSDEIYAG 221 (416)
T ss_dssp HHHHHHTCCEEEECTTTT
T ss_pred HHHHHcCCEEEEEccccc
Confidence 999999999999999966
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=119.65 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=99.3
Q ss_pred cccCCCCCCHHHHHHHHHHHhcC---CCCCcccc---ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 21 HAYFPSGNSYPSVLADMLSDAIG---CIGFSWAA---SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~~~n---~~~~~~~~---~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
+.+..+.+..+.++..+...+.+ +....+.. ++...++..++.+++++++|.+.... -
T Consensus 6 ~~~~g~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~-------v--------- 69 (360)
T 1w23_A 6 NFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQ-------I--------- 69 (360)
T ss_dssp ECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEE-------E---------
T ss_pred eecCCCcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCce-------E---------
Confidence 33333445567777766665532 22222222 67777888889999999999863110 0
Q ss_pred cccccCCCCCCCCcccch-hHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC
Q psy852 95 NIEDYMTPANQPQSLGGG-VIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD 173 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gG-t~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~ 173 (891)
.+++|+ +....+....+... | .+...|+++..+|++... +...| +++.|++|+
T Consensus 70 ------------~~~~g~gt~al~~~~~~l~~~----------~--~~g~~vi~~~~~~~~~~~-~~~~g-~~~~v~~~~ 123 (360)
T 1w23_A 70 ------------LFLQGGASLQFTMLPMNLLTK----------G--TIGNYVLTGSWSEKALKE-AKLLG-ETHIAASTK 123 (360)
T ss_dssp ------------EEESSHHHHHHHHHHHHHCCT----------T--CEEEEEECSHHHHHHHHH-HHTTS-EEEEEEECG
T ss_pred ------------EEECCcchHHHHHHHHHhcCC----------C--CcccEEEecchhHHHHHH-HHHhC-CeEEeeccc
Confidence 123454 43222222222111 0 012357777788887543 44456 999999986
Q ss_pred -CCcccHHHHHH-HHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 174 -KNSLRGATLRQ-VMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 174 -~g~id~~~L~~-~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+|.+|+++|++ ++++. +.+|+++..+|.+|.+-| +| ++++|+++++|+|+
T Consensus 124 ~~~~~d~~~l~~~~i~~~------~k~v~~~~~~nptG~~~~--~i---~~~~~~~li~D~a~ 175 (360)
T 1w23_A 124 ANSYQSIPDFSEFQLNEN------DAYLHITSNNTIYGTQYQ--NF---PEINHAPLIADMSS 175 (360)
T ss_dssp GGTSCSCCCGGGCCCCTT------EEEEEEESEETTTTEECS--SC---CCCCSSCEEEECTT
T ss_pred ccCcCCccchHhhccCCC------CCEEEEeCCCCCcceecc--cc---cccCCceEEEechh
Confidence 78899999988 76432 457888889999999855 33 33787777777777
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-09 Score=116.30 Aligned_cols=243 Identities=16% Similarity=0.197 Sum_probs=143.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH---HHHHcCceEEEecCCCCCCcCHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK---AAMMAFVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K---aa~l~gv~v~~Vp~d~~G~mD~~ 544 (891)
+++||++++..++.+.. + +.-.|+++...|.+... .+...|.+++.+ .++++.+|++
T Consensus 58 ~~~~gt~a~~~~~~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~ 117 (347)
T 1jg8_A 58 FVPSGTMGNQVSIMAHT----Q---------------RGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPD 117 (347)
T ss_dssp EESCHHHHHHHHHHHHC----C---------------TTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHH
T ss_pred EecCcHHHHHHHHHHhc----C---------------CCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHH
Confidence 56788999887764421 0 12247778889987654 445678888888 6667889999
Q ss_pred HHHHHHHhhhhc--CCccEEEEe---cC-Cccc-----------hhhh-----hc-----------CC------CCccEE
Q psy852 545 TLRQVMQQDETM--GYIPFFVST---TL-GTTS-----------CYRK-----SQ-----------GI------EYADSF 585 (891)
Q Consensus 545 ~Le~aI~~d~~~--g~ip~~Vva---ta-GTT~-----------c~~~-----ld-----------Gi------~~aDSI 585 (891)
+|+++|++.... ....+++.. .. |++. |.++ +| +. ..+|++
T Consensus 118 ~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~ 197 (347)
T 1jg8_A 118 DVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSV 197 (347)
T ss_dssp HHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEE
T ss_pred HHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEE
Confidence 999999752100 111223322 23 6653 3321 22 22 247899
Q ss_pred EEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHH
Q psy852 586 NVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRR 665 (891)
Q Consensus 586 s~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~ 665 (891)
++++||+++.|. |++++.+++.+.........+ +.+. +..++..+..+..+ +.+.+.+++
T Consensus 198 ~~s~sK~l~~~~--G~~~~~~~~~~~~~~~~~~~~------------~~~~----~~~~~~~~~~~~~l--~~~~~~~~~ 257 (347)
T 1jg8_A 198 MFCLSKGLCAPV--GSVVVGDRDFIERARKARKML------------GGGM----RQAGVLAAAGIIAL--TKMVDRLKE 257 (347)
T ss_dssp EEESSSTTCCSS--CEEEEECHHHHHHHHHHHHHH------------TCCC----SSTHHHHHHHHHHH--HHSSTTHHH
T ss_pred EEecccccCCCc--eEEEEcCHHHHHHHHHHHHHc------------CCch----hHHHHHHHHHHHHH--HHHHHHHHH
Confidence 999999999884 555555553332211111000 0000 00111112221111 112223444
Q ss_pred HHHHHHHHHHHhccCCCcEEe-CCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCC
Q psy852 666 HCELAKLFEGKVRRDPRFEIS-NDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERK 743 (891)
Q Consensus 666 ~~~lA~~L~~~L~~~~~~eil-~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~t 743 (891)
..+.++++.+.|++. ++++. .++..++++|++++. +....++.+.|.+.|+.+... +...+ ++++..+
T Consensus 258 ~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~v~~~----~~~~iRl~~~~~~ 327 (347)
T 1jg8_A 258 DHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNL-----KVNAHGFIEALRNSGVLANAV----SDTEIRLVTHKDV 327 (347)
T ss_dssp HHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTS-----SSCHHHHHHHHHHHTEECEEE----ETTEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccc-----cCCHHHHHHHHHHCCCEEecC----CCCeEEEEeCCCC
Confidence 556788888888876 66653 345667888888531 123567888888889875432 13456 9998889
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy852 744 RKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 744 T~edId~li~~L~ei~~ 760 (891)
+++|++++++.|+++..
T Consensus 328 ~~e~i~~~~~~l~~~l~ 344 (347)
T 1jg8_A 328 SRNDIEEALNIFEKLFR 344 (347)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998753
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-09 Score=118.03 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=74.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC---CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD---DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d---~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I 217 (891)
.|+++..+|++...++...+.+++.|+.+ +++.+|+++|++++++. +.+|+++..+|.+|.+-| +++|
T Consensus 104 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i 177 (381)
T 1v2d_A 104 EVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPR------TRALLLNTPMNPTGLVFGERELEAI 177 (381)
T ss_dssp EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred EEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcC------CEEEEECCCCCCCCCccCHHHHHHH
Confidence 47777889999988887778899999987 56889999999888543 457777789999999966 8999
Q ss_pred HHHHHHcCCceeeeccccCCc
Q psy852 218 GPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++|+++|+++++|.+++++.
T Consensus 178 ~~~~~~~~~~li~De~~~~~~ 198 (381)
T 1v2d_A 178 ARLARAHDLFLISDEVYDELY 198 (381)
T ss_dssp HHHHHHTTCEEEEECTTTTCB
T ss_pred HHHHHHcCCEEEEEcCccccc
Confidence 999999999999999996543
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-08 Score=109.15 Aligned_cols=90 Identities=16% Similarity=0.034 Sum_probs=76.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.+....+...+.+++.++.++++.+|+++|++.+++. ..+.+|+++..+|.+|.+-|++++.++++.
T Consensus 94 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~ 169 (354)
T 3ly1_A 94 QLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAY----SGPSIVYLVNPNNPTGTITPADVIEPWIAS 169 (354)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTC----SSCEEEEEESSCTTTCCCCCHHHHHHHHHT
T ss_pred eEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccC----CCCCEEEEeCCCCCcCCCcCHHHHHHHHHh
Confidence 3777888999999888888889999999989999999999999741 114577778899999999999999999887
Q ss_pred --cCCceeeeccccCC
Q psy852 224 --FDVWLHVDGAYAGS 237 (891)
Q Consensus 224 --~~~~lHvDaA~GG~ 237 (891)
+|+++++|.+|+++
T Consensus 170 ~~~~~~li~De~~~~~ 185 (354)
T 3ly1_A 170 KPANTMFIVDEAYAEF 185 (354)
T ss_dssp CCTTEEEEEECTTGGG
T ss_pred CCCCeEEEEeccHHHh
Confidence 89999999998653
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-09 Score=116.99 Aligned_cols=271 Identities=11% Similarity=0.043 Sum_probs=157.5
Q ss_pred HHHHHHHHhhccCCccc-cccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHH
Q psy852 447 ELAKLFEGKVRRDPRFE-ISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAA 523 (891)
Q Consensus 447 elAr~l~~~L~~~~~~e-Vv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa 523 (891)
++.+.+++.+...++.+ ++ +|+|+++++..++.+.- +. ++ .|++....|++ ....+
T Consensus 53 ~~~~~la~~~g~~~~~~~i~--~t~g~t~a~~~~~~~l~----~~--------------gd-~vl~~~~~~~~~~~~~~~ 111 (362)
T 2c0r_A 53 EAQARLLALLGNPTGYKVLF--IQGGASTQFAMIPMNFL----KE--------------GQ-TANYVMTGSWASKALKEA 111 (362)
T ss_dssp HHHHHHHHHTTCCSSEEEEE--ESSHHHHHHHHHHHHHC----CT--------------TC-EEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEE--ECCCchHHHHHHHHhcC----CC--------------CC-eEEEEecCcHhHHHHHHH
Confidence 34446666666533224 34 57889999988776531 00 12 24333344554 23455
Q ss_pred HHcCceEEEecCCC---CC-CcCHHHHHHHHHhhhhcCCccEEE---EecCCcc-c-------hhhhhcC----------
Q psy852 524 MMAFVRLKILEPDD---KN-SLRGATLRQVMQQDETMGYIPFFV---STTLGTT-S-------CYRKSQG---------- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~---~G-~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT-~-------c~~~ldG---------- 578 (891)
...| +++.+|.+. .+ .+|.++++ |++++ ..+++ .+..|+. . +.-++|+
T Consensus 112 ~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t----~~v~~~~~~n~tG~~~~~l~~i~~~~vivD~a~~~~~~~~~ 184 (362)
T 2c0r_A 112 KLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNA----AYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFD 184 (362)
T ss_dssp HHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTE----EEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCC
T ss_pred HHhC-CeEEEecccccccccCCCHHHcc--cCCCc----CEEEEeCCcCccceecccccccCCCEEEEEChhhccCCccc
Confidence 5567 888898762 23 35666553 43221 11222 3346664 2 1001221
Q ss_pred CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 579 IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 579 i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
+...|.+++++|||++ |.|+|+++++++. + +.+.. .+.|+............++.. ......+..+++.+...
T Consensus 185 ~~~~d~~~~s~~K~~g-~~G~G~l~~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~t~~---~~~~~a~~~al~~~~~~ 258 (362)
T 2c0r_A 185 LNQFGLVYAGAQKNLG-PSGVTVVIVREDL-V-AESPKHLPTMLRYDTYVKNNSLYNTPP---SFGIYMVNEVLKWIEER 258 (362)
T ss_dssp GGGCSEEEEETTTTTC-CSSCEEEEEEGGG-S-SSCCTTSCGGGCHHHHHHTTTCSSCCC---HHHHHHHHHHHHHHHHT
T ss_pred hhHCcEEEEecccccc-CcCcEEEEEcHHH-H-hhccccCchHHhHHHHhhccCcCCCch---HHHHHHHHHHHHHHHHh
Confidence 2334999999999996 8899999997652 1 11111 111110000000000001111 12224455666655555
Q ss_pred -hHHHHHHHHHHHHHHHHHHhccCCCc-EEeCCC---ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccC
Q psy852 658 -GLQKYIRRHCELAKLFEGKVRRDPRF-EISNDV---RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQ 732 (891)
Q Consensus 658 -G~~~~i~~~~~lA~~L~~~L~~~~~~-eil~~~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g 732 (891)
+++++.++..++++++.+.|++.+++ ++..++ ..++++|++++ .....++.+.|.+.|++...+...
T Consensus 259 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~L~~~gi~~~~g~~~-- 330 (362)
T 2c0r_A 259 GGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS------EELEKEFVKASEQEGFVGLKGHRS-- 330 (362)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC------HHHHHHHHHHHHHTTEESCBCCTT--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC------cchHHHHHHHHHHCCCeeccCCCC--
Confidence 78999999999999999999998656 876432 34678888752 224567888899999864333222
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+ +|++++++++|+++++++|+++.
T Consensus 331 ~~~iRis~~~~~~~e~i~~l~~~l~~~~ 358 (362)
T 2c0r_A 331 VGGLRASIYNAVPYESCEALVQFMEHFK 358 (362)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2336 99999999999999999999875
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.7e-08 Score=108.73 Aligned_cols=83 Identities=19% Similarity=0.095 Sum_probs=69.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC-CCCcccHHHHHHHHH-hhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATLRQVMQ-QDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~id~~~L~~~l~-~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
.|+++..+|.+...++...|.+++.+++| +++.+|+++|++++. ... .+.+|+ .++.+|.+.|+++|.++|
T Consensus 80 ~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~----~tk~v~---~~~~~G~~~~~~~i~~la 152 (377)
T 3ju7_A 80 YALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKE----EVAIVV---PYATFGSWMNLEEYEELE 152 (377)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGG----GEEEEC---CBCGGGBCCCCHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCC----CceEEE---EECCCCCccCHHHHHHHH
Confidence 48889999999999888888899999998 578999999999984 330 123444 356789999999999999
Q ss_pred HHcCCceeeeccc
Q psy852 222 KEFDVWLHVDGAY 234 (891)
Q Consensus 222 ~~~~~~lHvDaA~ 234 (891)
+ +|++||+|+|+
T Consensus 153 ~-~~~~vi~D~a~ 164 (377)
T 3ju7_A 153 K-KGVPVVVDAAP 164 (377)
T ss_dssp H-TTCCBEEECTT
T ss_pred h-cCCEEEEECCC
Confidence 9 99999999998
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.2e-09 Score=117.34 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=74.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-+|......+...|.+++.++.+ .++.+|+++|++.+++. +.+|+++..+|.+|.+-| +++|+
T Consensus 144 ~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~ 217 (427)
T 3dyd_A 144 NILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEK------TACLIVNNPSNPCGSVFSKRHLQKIL 217 (427)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTT------EEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC------CCEEEEECCCCCCCCCCCHHHHHHHH
Confidence 47777788888888887778899999886 35689999999988653 346677778999999999 99999
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|+++|+++++|.||+++.
T Consensus 218 ~~~~~~~~~~i~Deay~~~~ 237 (427)
T 3dyd_A 218 AVAARQCVPILADEIYGDMV 237 (427)
T ss_dssp HHHHHTTCCEEEECTTTTCB
T ss_pred HHHHHCCCEEEEEcCchhhc
Confidence 99999999999999997654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=121.97 Aligned_cols=261 Identities=11% Similarity=-0.030 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q psy852 28 NSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQ 107 (891)
Q Consensus 28 ~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~ 107 (891)
...+.++..+... .+........+|...++..++.+++++++|.+.... . .
T Consensus 50 ~~~~~v~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~-------i---------------------~ 100 (398)
T 2fyf_A 50 KVRLEQLQTLTTT-AAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYE-------V---------------------I 100 (398)
T ss_dssp CCCHHHHHGGGTT-TTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCE-------E---------------------E
T ss_pred CCCHHHHHHHhhc-CCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCce-------E---------------------E
Confidence 3445666555442 112111123467777888899999999999973210 0 1
Q ss_pred c-ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHH-HHHHc--CCeEEEEecCCCCcccHHHHH
Q psy852 108 S-LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK-AAMMA--FVRLKILEPDDKNSLRGATLR 183 (891)
Q Consensus 108 ~-~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~k-aa~~~--~~~v~~V~~d~~g~id~~~L~ 183 (891)
+ ++||+...++.+..+. . ++ +++++..+|..... .+... +.+++.|+++ +|.++..+
T Consensus 101 ~~t~g~t~al~~~~~~l~------~---------~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~g~~~~~~-- 161 (398)
T 2fyf_A 101 LGNGGATAFWDAAAFGLI------D---------KR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD-PGSAPEPQ-- 161 (398)
T ss_dssp EEETCHHHHHHHHHHHTC------S---------SC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC-TTCCCCCC--
T ss_pred EeCCchhHHHHHHHHHhc------C---------CC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC-CCCCCCcc--
Confidence 3 5677654333332220 0 12 23335566643322 33333 6688899988 55543321
Q ss_pred HHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCccc
Q psy852 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIW 263 (891)
Q Consensus 184 ~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~ 263 (891)
+. ..+.+|+++..+|.+|.+.|+++|.++ +|+++|+|+|++.
T Consensus 162 --i~------~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~--------------------------- 203 (398)
T 2fyf_A 162 --TD------PSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGA--------------------------- 203 (398)
T ss_dssp --CC------TTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTT---------------------------
T ss_pred --cc------CCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEecccc---------------------------
Confidence 21 225588888999999999999998886 7777777777621
Q ss_pred ccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccC
Q psy852 264 YERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAG 343 (891)
Q Consensus 264 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 343 (891)
T Consensus 204 -------------------------------------------------------------------------------- 203 (398)
T 2fyf_A 204 -------------------------------------------------------------------------------- 203 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcc-------cCccccCCCCC-Cccccccccc
Q psy852 344 SSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-------VDPLYLQHGHE-GAIDYRHWGI 415 (891)
Q Consensus 344 ~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~-------~~~~y~~~~~~-~~~~~~~~~~ 415 (891)
+... .. +..+|.++.++||++..|.+.|++++++.. +. .+. ..++|+..... ..+. ....
T Consensus 204 ~~~~-~~-------~~~~di~~~s~sK~~~~~gg~g~l~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 271 (398)
T 2fyf_A 204 GGLP-VD-------IAETDAYYFAPQKNFASDGGLWLAIMSPAA-LS-RIEAIAATGRWVPDFLSLPIAVENSL-KNQT- 271 (398)
T ss_dssp TTSC-CC-------GGGCSEEEECTTSTTCSCSSEEEEEECHHH-HH-HHHHHHHTTCCCCGGGCHHHHHHHHT-TTCC-
T ss_pred CCcc-cC-------cccCcEEEEecCcccCCCCceEEEEECHHH-HH-HhhcccccCCCCCcEEehHHHhhhcc-cCCC-
Confidence 1100 00 112689999999998888668888887542 11 111 01233321100 0000 0011
Q ss_pred CCCCCh-hHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 416 PLSRRF-RSLKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 416 ~~sr~~-~~l~~w~~l~~~g~~G-~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
.++-.. ...++..+++.+...| +.++.++..++++++.+.|++.++++++.
T Consensus 272 ~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 324 (398)
T 2fyf_A 272 YNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFV 324 (398)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESC
T ss_pred CCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceecc
Confidence 122222 3456777888877777 99999999999999999999888888774
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-08 Score=112.44 Aligned_cols=89 Identities=9% Similarity=-0.078 Sum_probs=73.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCC---cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN---SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g---~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I 217 (891)
.|++..-+|++...++...+.+++.+|.+.++ .+|+++|++++++. .+.+|+++..+|.+|.+-| +++|
T Consensus 113 ~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~l 187 (390)
T 1d2f_A 113 GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIM 187 (390)
T ss_dssp EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHH
T ss_pred EEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccC-----CCeEEEEeCCCCCCCcCcCHHHHHHH
Confidence 36777788999988887778899999987543 59999999998642 1346666778999999977 8999
Q ss_pred HHHHHHcCCceeeeccccCC
Q psy852 218 GPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~ 237 (891)
+++|+++|+++++|.+|+++
T Consensus 188 ~~~~~~~~~~li~De~~~~~ 207 (390)
T 1d2f_A 188 ADLCERHGVRVISDEIHMDM 207 (390)
T ss_dssp HHHHHHTTCEEEEECTTTTC
T ss_pred HHHHHHcCCEEEEEcccccc
Confidence 99999999999999999654
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.5e-07 Score=101.80 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=74.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEE-EeecccCccccccC---HHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV-STTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V-~~t~Gtt~~GavDp---l~~I~~ 219 (891)
.|++..-+|.+...++...+.+++.||.|++| +|+++|++.++.+...+..|.+| +....+|.+|.+-| +++|++
T Consensus 166 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~ 244 (448)
T 3aow_A 166 IVVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLE 244 (448)
T ss_dssp EEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHH
Confidence 47777788999988888778899999998877 99999999997321122234454 67788899999876 568999
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++|++|++|.+|+++
T Consensus 245 la~~~~~~lI~De~y~~~ 262 (448)
T 3aow_A 245 LASEYDFIVVEDDPYGEL 262 (448)
T ss_dssp HHHHHTCEEEEECSCTTC
T ss_pred HHHHcCCEEEEECCCccc
Confidence 999999999999999654
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.1e-09 Score=117.44 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=67.6
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.++...+. ..+.+++.++.+ |+++|+++|++. +.+|++...+|.+|.+.|+++|++
T Consensus 123 ~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-----d~~~le~ai~~~------tklV~~e~~~NptG~v~dl~~I~~ 191 (415)
T 2fq6_A 123 HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVA 191 (415)
T ss_dssp EEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhhccC------CcEEEEECCCCCCCEeecHHHHHH
Confidence 48888899999887662 246788888765 889999888654 358888899999999999999999
Q ss_pred HHHH--cCCceeeecccc
Q psy852 220 VAKE--FDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~--~~~~lHvDaA~G 235 (891)
+|++ +|+++|+|++|+
T Consensus 192 la~~~~~g~~livD~a~a 209 (415)
T 2fq6_A 192 AVRSVVPDAIIMIDNTWA 209 (415)
T ss_dssp HHHHHCTTCEEEEECTTT
T ss_pred HHHhhcCCCEEEEECCCc
Confidence 9999 999999999884
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.8e-09 Score=113.87 Aligned_cols=83 Identities=7% Similarity=0.023 Sum_probs=70.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.+++|++ +.+|+++|++.+++. +.+|+++ +.+|.+.|+++|.++|+
T Consensus 81 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~~~---~~~G~~~~~~~i~~l~~ 151 (393)
T 1mdo_A 81 EVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQ------TKAIIPV---HYAGAPADLDAIYALGE 151 (393)
T ss_dssp EEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTT------EEEECCB---CGGGCCCCHHHHHHHHH
T ss_pred EEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCC------ceEEEEe---CCCCCcCCHHHHHHHHH
Confidence 4888899999999988878889999999875 689999999988653 3355443 57899999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++++|+|++
T Consensus 152 ~~~~~li~D~a~~ 164 (393)
T 1mdo_A 152 RYGIPVIEDAAHA 164 (393)
T ss_dssp HHTCCBCEECTTC
T ss_pred HcCCeEEEECccc
Confidence 9999999999994
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5e-09 Score=126.53 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=73.2
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecCCC-----Ccc-----cHHHHHHHHHhhhhcCCcceEEEeecccCcccccc
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-----NSL-----RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD 212 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-----g~i-----d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD 212 (891)
..|++...+|.|+..++.+.|.++++++++.+ +.+ |+++|+++|++.... +.|.+|++|.+ |.+|.+-
T Consensus 236 D~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~-k~p~~vivt~p-n~~G~v~ 313 (715)
T 3n75_A 236 STILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLY 313 (715)
T ss_dssp CEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTC-CSCSEEEEESS-CTTSEEE
T ss_pred CEEEECCCccHHHHHHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCc-cCceEEEEECC-CCCCccC
Confidence 35889999999999999888889999987532 224 899999999874321 22557777777 8899999
Q ss_pred CHHHHHHHHHHcCCceeeeccccCCc
Q psy852 213 NLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 213 pl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
|+++|+++|+++ .+++|.|||+.+
T Consensus 314 dl~~I~ela~~~--~livDEAH~~~~ 337 (715)
T 3n75_A 314 NTDFIKKTLDVK--SIHFDSAWVPYT 337 (715)
T ss_dssp CHHHHHHHCCCS--EEEEECTTCTTG
T ss_pred CHHHHHHHhCcC--cEEEcccccccc
Confidence 999999999865 379999997654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.6e-09 Score=115.67 Aligned_cols=272 Identities=11% Similarity=0.006 Sum_probs=162.4
Q ss_pred HHHHHHHHhhccCCccccccCC-CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH-HHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDV-RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV-EKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~i-tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv-~Kaa~ 524 (891)
++.+.+++.+...+.-+++ + ++|+++++..++.+... ++ +++++...|... .+.+.
T Consensus 82 ~~~~~la~~~g~~~~~~i~--~~t~g~t~al~~~~~~l~~-------------------~g-v~~v~~~~~~~~~~~~~~ 139 (398)
T 2fyf_A 82 RVRSGLAELFSLPDGYEVI--LGNGGATAFWDAAAFGLID-------------------KR-SLHLTYGEFSAKFASAVS 139 (398)
T ss_dssp HHHHHHHHHTTCCTTCEEE--EEETCHHHHHHHHHHHTCS-------------------SC-EEEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCceEE--EeCCchhHHHHHHHHHhcC-------------------CC-eEEEeCCHHHHHHHHHHH
Confidence 4555666666543223566 5 88999999988766410 11 233466666432 22344
Q ss_pred Hc--CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc-----hhh-----hhcC----------C
Q psy852 525 MA--FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS-----CYR-----KSQG----------I 579 (891)
Q Consensus 525 l~--gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~-----c~~-----~ldG----------i 579 (891)
.. |.+++.||++ +|.++..+ +++. ...+++ .+..|+.. +.. .+|+ +
T Consensus 140 ~~~~g~~~~~v~~~-~g~~~~~~----i~~~----~~~v~~~~~~nptG~~~~~~~i~~~~~~~vivD~a~~~~~~~~~~ 210 (398)
T 2fyf_A 140 KNPFVGEPIIITSD-PGSAPEPQ----TDPS----VDVIAWAHNETSTGVAVAVRRPEGSDDALVVIDATSGAGGLPVDI 210 (398)
T ss_dssp HCTTSCCCEEEECC-TTCCCCCC----CCTT----CSEEEEESEETTTTEECCCCCCTTCC-CEEEEECTTTTTTSCCCG
T ss_pred HhCCCCceEEEecC-CCCCCCcc----ccCC----CCEEEEeCcCCCcceecchHHhhhhcCCeEEEEeccccCCcccCc
Confidence 44 6788889887 44443221 2221 112222 22355544 110 1221 2
Q ss_pred CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-------cCCCccccCCC-CCccccCCccccccc-ccchHHHHH
Q psy852 580 EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-------VDPLYLQHGHE-GAIDYRHWGIPLSRR-FRSLKLWFV 650 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-------~~~~Yl~~~~e-~~~~~~~~ti~~SRr-~~aL~lW~~ 650 (891)
+.+|.+++++||+++.|.++|+++++++. +. .+. ..+.|+..+.. .... ..... .+-. ...+.+..+
T Consensus 211 ~~~di~~~s~sK~~~~~gg~g~l~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~t~~~~~~~a~~~a 286 (398)
T 2fyf_A 211 AETDAYYFAPQKNFASDGGLWLAIMSPAA-LS-RIEAIAATGRWVPDFLSLPIAVENSL-KNQTY-NTPAIATLALLAEQ 286 (398)
T ss_dssp GGCSEEEECTTSTTCSCSSEEEEEECHHH-HH-HHHHHHHTTCCCCGGGCHHHHHHHHT-TTCCS-SCCCHHHHHHHHHH
T ss_pred ccCcEEEEecCcccCCCCceEEEEECHHH-HH-HhhcccccCCCCCcEEehHHHhhhcc-cCCCC-CCCCHHHHHHHHHH
Confidence 34799999999999988779998887642 22 111 01122211000 0000 00000 1111 122355667
Q ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeC-CC--cee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE
Q psy852 651 IRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISN-DV--RLG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHM 725 (891)
Q Consensus 651 L~~lG~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~--~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~ 725 (891)
++.+...| +++..++..++++++.+.|++.+++++.. ++ ..+ +++|++++ +....++.+.|.++|+.+.
T Consensus 287 l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~L~~~gI~v~ 360 (398)
T 2fyf_A 287 IDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVD------DVDAGTVAKILRANGIVDT 360 (398)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECT------TSCHHHHHHHHHHTTCBCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCC------CCCHHHHHHHHHHCCcEEe
Confidence 77666666 89999999999999999999988999875 23 356 89999842 1235678899988898754
Q ss_pred eeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 726 VPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 726 s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+....+...+ ++++.++|++|++++++.|+++.
T Consensus 361 ~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 361 EPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp SCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 33222234567 99999999999999999998875
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-08 Score=114.40 Aligned_cols=84 Identities=13% Similarity=0.013 Sum_probs=54.3
Q ss_pred EEEecCCCChHHH-HHHH--HcCC--eEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHH
Q psy852 144 MAYCSKEAHSCVE-KAAM--MAFV--RLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~-kaa~--~~~~--~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I 217 (891)
.|+++..+|.++. ..+. ..+. +.+.++++ +++.+|+++|++.+++.. +.+|+++..++ |...++++|
T Consensus 120 ~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~i 192 (425)
T 3ecd_A 120 TVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHK-----PSLIIAGFSAY--PRKLDFARF 192 (425)
T ss_dssp EEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHC-----CSEEEEECSCC--CSCCCHHHH
T ss_pred EEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcC-----CcEEEEccccC--CCcCCHHHH
Confidence 4777788888833 3332 3333 55566666 458999999999997532 33555554333 899999999
Q ss_pred HHHHHHcCCceeeeccc
Q psy852 218 GPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~ 234 (891)
+++|+++|++|++|.++
T Consensus 193 ~~l~~~~~~~li~De~~ 209 (425)
T 3ecd_A 193 RAIADSVGAKLMVDMAH 209 (425)
T ss_dssp HHHHHHHTCEEEEECGG
T ss_pred HHHHHHcCCEEEEECcC
Confidence 99999999999999996
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-08 Score=111.64 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=72.6
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.+...++...+.+++.++. +|+++|++.+++... + .+.+|+.+..+|.+|.+.|+++|+++|++
T Consensus 129 ~V~~~~p~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~-~-~~~~v~~~~~~nptG~~~~~~~l~~~~~~ 201 (398)
T 3a2b_A 129 YILLDERDHASIIDGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPE-D-SAKLICTDGIFSMEGDIVNLPELTSIANE 201 (398)
T ss_dssp EEEEETTCCHHHHHHHHHSSSEEEEECT-----TCHHHHHHHHHTSCS-S-SCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHcCCceEEeCC-----CCHHHHHHHHHhhcc-C-CceEEEEeCCCCCCCCccCHHHHHHHHHH
Confidence 4888889999999999888889999886 689999999976421 1 35677778889999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.+|+
T Consensus 202 ~~~~li~De~~~ 213 (398)
T 3a2b_A 202 FDAAVMVDDAHS 213 (398)
T ss_dssp HTCEEEEECTTT
T ss_pred cCcEEEEECCCc
Confidence 999999999994
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.7e-09 Score=113.33 Aligned_cols=253 Identities=11% Similarity=0.018 Sum_probs=161.9
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+...+.-+++ +++|+++++..++.+... +.-.|+++...|.+...++...|
T Consensus 72 l~~~la~~~g~~~~~~i~--~~~g~t~a~~~~~~~~~~-------------------~gd~Vl~~~~~~~~~~~~~~~~g 130 (367)
T 3euc_A 72 LRAKLKEVMQVPAGMEVL--LGNGSDEIISMLALAAAR-------------------PGAKVMAPVPGFVMYAMSAQFAG 130 (367)
T ss_dssp HHHHHHHHHTCCTTCEEE--EEEHHHHHHHHHHHHTCC-------------------TTCEEEEEESCSCCSCHHHHTTT
T ss_pred HHHHHHHHhCCCCcceEE--EcCCHHHHHHHHHHHHcC-------------------CCCEEEEcCCCHHHHHHHHHHcC
Confidence 334445555431222556 688999999887765311 11247777888888888888889
Q ss_pred ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-------hcCC-------
Q psy852 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-------SQGI------- 579 (891)
Q Consensus 528 v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-------ldGi------- 579 (891)
.+++.+|.++++.+|+++|+++|++.. ...++++ +..|+.. |.++ +|.+
T Consensus 131 ~~~~~v~~~~~~~~d~~~l~~~l~~~~---~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~ 207 (367)
T 3euc_A 131 LEFVGVPLRADFTLDRGAMLAAMAEHQ---PAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQE 207 (367)
T ss_dssp CEEEEEECCTTSCCCHHHHHHHHHHHC---CSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSC
T ss_pred CeEEEecCCCCCCCCHHHHHHHhhccC---CCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhccc
Confidence 999999999999999999999998721 1123332 2255552 4333 1211
Q ss_pred --------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHH
Q psy852 580 --------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV 650 (891)
Q Consensus 580 --------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~ 650 (891)
...+-+..+.||+++....+|+++..++ .+ +.+. .... ++ ...+.+++.
T Consensus 208 ~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~-~~-~~~~~~~~~--------------~~------~~~~~~~a~ 265 (367)
T 3euc_A 208 SWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQ-WL-EQLDKVRPP--------------YN------VNVLTEATA 265 (367)
T ss_dssp CSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHH-HH-HHHGGGCCS--------------SC------CCHHHHHHH
T ss_pred chHHHHhhCCCEEEEecchhhcccccCceeeeeCHH-HH-HHHHHhCCC--------------CC------CCHHHHHHH
Confidence 1123567789999554567888887432 22 2221 1110 11 112333333
Q ss_pred HHHHH-HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 651 IRTYG-LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 651 L~~lG-~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
...+. .+.+.+..++..++++++.+.|++.+++++. ++..+.+++++. ..+.+.+.|.+.|+.+..+..
T Consensus 266 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~---------~~~~l~~~l~~~gi~v~~~~~ 335 (367)
T 3euc_A 266 LFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP---------DAAQTFDRLLARKVLIKNVSK 335 (367)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS---------CHHHHHHHHHTTTEECEECGG
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC---------CHHHHHHHHHHCCeEEEECCc
Confidence 33332 4457888888999999999999999899854 455667777774 246788889889988654443
Q ss_pred c--cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 730 Q--EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 730 ~--~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
. .....+ ++++ |++|+++++++|++++
T Consensus 336 ~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 336 MHPLLANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp GCGGGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred cCCCCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 2 234556 8866 8999999999998764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-08 Score=110.05 Aligned_cols=152 Identities=9% Similarity=0.029 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSL 109 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~ 109 (891)
.+.+...+...+-+ ....|...+...+++..+.+++.+..|++.+. +.+ .++
T Consensus 44 ~~~v~~a~~~~~~~-~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~-------------~~v--------------~~~ 95 (370)
T 2z61_A 44 PKPIVDEGIKSLKE-GKTHYTDSRGILELREKISELYKDKYKADIIP-------------DNI--------------IIT 95 (370)
T ss_dssp CHHHHHHHHHHHHT-TCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCG-------------GGE--------------EEE
T ss_pred CHHHHHHHHHHHHc-CccCCCCCCCCHHHHHHHHHHHHHHhCCCCCh-------------hhE--------------EEC
Confidence 35554444333322 22223333446789999999999988865431 111 135
Q ss_pred cchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhh
Q psy852 110 GGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQD 189 (891)
Q Consensus 110 ~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~ 189 (891)
+||+.........+ . . +...|++..-+|++...++...+.+++.++ +|+++|++.+++.
T Consensus 96 ~g~~~a~~~~~~~~-~-~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~------~d~~~l~~~l~~~ 154 (370)
T 2z61_A 96 GGSSLGLFFALSSI-I-D-------------DGDEVLIQNPCYPCYKNFIRFLGAKPVFCD------FTVESLEEALSDK 154 (370)
T ss_dssp SSHHHHHHHHHHHH-C-C-------------TTCEEEEESSCCTHHHHHHHHTTCEEEEEC------SSHHHHHHHCCSS
T ss_pred CChHHHHHHHHHHh-c-C-------------CCCEEEEeCCCchhHHHHHHHcCCEEEEeC------CCHHHHHHhcccC
Confidence 67764332222222 1 1 112477888899999988877778888887 7999999988642
Q ss_pred hhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCC
Q psy852 190 ETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 190 ~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+.+|+++..+|.+|.+-|++ |.++|+++|+++++|.+++++
T Consensus 155 ------~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~ 195 (370)
T 2z61_A 155 ------TKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGL 195 (370)
T ss_dssp ------EEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTC
T ss_pred ------ceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhc
Confidence 34666778899999999999 999999999999999999653
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-08 Score=110.52 Aligned_cols=272 Identities=9% Similarity=0.026 Sum_probs=165.8
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+.. + +++ +++|+++++..++.+.+ + .-.|+++..+|.+...++...|
T Consensus 57 l~~~la~~~~~-~--~v~--~~~ggt~al~~~l~~l~----~----------------gd~Vlv~~~~~~~~~~~~~~~G 111 (424)
T 2po3_A 57 FEERVAGLAGV-R--HAV--ATCNATAGLQLLAHAAG----L----------------TGEVIMPSMTFAATPHALRWIG 111 (424)
T ss_dssp HHHHHHHHHTS-S--EEE--EESCHHHHHHHHHHHHT----C----------------CSEEEEESSSCTHHHHHHHHTT
T ss_pred HHHHHHHHhCC-C--eEE--EeCCHHHHHHHHHHHcC----C----------------CCEEEECCCccHHHHHHHHHcC
Confidence 33344555543 2 455 78899999999887753 0 0248888899999999988899
Q ss_pred ceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcCC-------------C
Q psy852 528 VRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQGI-------------E 580 (891)
Q Consensus 528 v~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldGi-------------~ 580 (891)
.+++.+|+++ ++.+|+++|+++|++.+ ..++++...|+.. |.++ +|.+ .
T Consensus 112 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~----~~v~~~~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~ 187 (424)
T 2po3_A 112 LTPVFADIDPDTGNLDPDQVAAAVTPRT----SAVVGVHLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGS 187 (424)
T ss_dssp CEEEEECBCTTTSSBCHHHHGGGCCTTE----EEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS
T ss_pred CEEEEEecCCCcCCcCHHHHHHhhCcCC----cEEEEECCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeeccc
Confidence 9999999986 78899999999886532 2334445566654 4331 1211 1
Q ss_pred CccEEEEcCc--ccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 581 YADSFNVNVN--KWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 581 ~aDSIs~d~H--K~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
..|-+..++| |++.. ...|+++.++++.+......... +....+.... .....++..+..+..+. ..++
T Consensus 188 ~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~----~~~~~~~~~~--~g~~~~~~~~~aa~~l~--~~~~ 258 (424)
T 2po3_A 188 LGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNF----GFDLPGGSPA--GGTNAKMSEAAAAMGLT--SLDA 258 (424)
T ss_dssp SSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBT----TTTCTTCCTT--CCCBCCCCHHHHHHHHH--HHHH
T ss_pred ccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhc----Cccccccccc--cCcCCCcCHHHHHHHHH--HHHH
Confidence 1355556655 98775 56677776644432221111000 0000011000 11112334444444443 3466
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-----eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc--cc
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-----LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS--QE 731 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~--~~ 731 (891)
+++..++..++++++.+.|++++++++..++. ..++.|.+++. ..+.....+.+.|.+.|+.....+. ..
T Consensus 259 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~L~~~gI~v~~~~~~~~~ 335 (424)
T 2po3_A 259 FPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEA---TTGIHRDLVMEVLKAEGVHTRAYFSPGCH 335 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHH---HHSSCHHHHHHHHHHTTEECBCTTCSCGG
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCc---cchhhHHHHHHHHHHCCCceecccCCccc
Confidence 78888889999999999999988998876332 25666777420 0011356788888889987432111 00
Q ss_pred ------C-------------CeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 ------Q-------------NDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 ------g-------------~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ ...+ ++++..+|++||++++++|+++..
T Consensus 336 ~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~ 384 (424)
T 2po3_A 336 ELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT 384 (424)
T ss_dssp GSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 1125 767789999999999999998864
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-08 Score=114.87 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=68.5
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+....+ ...|.+++.++. .|+++|++.+++. +.+|+++..+|.+|.+.|+++|++
T Consensus 100 ~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~ 168 (389)
T 3acz_A 100 HLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT-----SDVEKVKAAWKPN------TKMVYLESPANPTCKVSDIKGIAV 168 (389)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECT-----TCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHHcCCEEEEECC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHH
Confidence 4788888999887764 446788999886 3899999888654 357888899999999999999999
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|+++|+++++|.||++
T Consensus 169 ~~~~~~~~livD~~~~~ 185 (389)
T 3acz_A 169 VCHERGARLVVDATFTS 185 (389)
T ss_dssp HHHHHTCEEEEECTTTC
T ss_pred HHHHcCCEEEEECCCcc
Confidence 99999999999999854
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.95 E-value=4e-08 Score=107.90 Aligned_cols=89 Identities=11% Similarity=0.088 Sum_probs=76.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.+....+...+.+++.++.++++.+|+++|++.+++. +.+|+++..+|.+|.+-|++++.++++.
T Consensus 110 ~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~ 183 (363)
T 3ffh_A 110 NTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEK------TTIVWICNPNNPTGNYIELADIQAFLDR 183 (363)
T ss_dssp EEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTT
T ss_pred EEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHh
Confidence 3777778999999888777889999999989999999999998654 4577778889999999999999999988
Q ss_pred c--CCceeeeccccCCc
Q psy852 224 F--DVWLHVDGAYAGSS 238 (891)
Q Consensus 224 ~--~~~lHvDaA~GG~~ 238 (891)
+ |+++++|.+|+++.
T Consensus 184 ~~~~~~li~De~~~~~~ 200 (363)
T 3ffh_A 184 VPSDVLVVLDEAYIEYV 200 (363)
T ss_dssp SCTTSEEEEECTTGGGC
T ss_pred CCCCcEEEEeCchHhhc
Confidence 8 89999999996543
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-08 Score=113.90 Aligned_cols=166 Identities=11% Similarity=0.010 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcCC---CCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 32 SVLADMLSDAIGC---IGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 32 ~~~~~~l~~~~n~---~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
.++......+.+. ....|..++...++.+.+.+++++..|++.+. ++++ .
T Consensus 110 ~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-------------~~i~--------------~ 162 (500)
T 3tcm_A 110 DSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANA-------------DDIF--------------L 162 (500)
T ss_dssp HHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCG-------------GGEE--------------E
T ss_pred HHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCc-------------ccEE--------------E
Confidence 3454444444332 23345555566789999999999998876431 1111 3
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVM 186 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l 186 (891)
++||+. .+..++...... +...|+++.-+|.+...++...+.+++.+++|++ +.+|+++|++.|
T Consensus 163 t~G~~~-al~~~~~~l~~~-------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 228 (500)
T 3tcm_A 163 TDGASP-GVHLMMQLLIRN-------------EKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQL 228 (500)
T ss_dssp ESSSHH-HHHHHHHHHCCS-------------TTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHH
T ss_pred cCCHHH-HHHHHHHHHcCC-------------CCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHH
Confidence 456653 322222211101 1234888889999999998888889999998875 489999999999
Q ss_pred HhhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCCc
Q psy852 187 QQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 187 ~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
++...+|..+.+|+++..+|.||.+-+ +.+|+++|+++|+++++|.||+++.
T Consensus 229 ~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~ 283 (500)
T 3tcm_A 229 EDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENI 283 (500)
T ss_dssp HHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred HHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccc
Confidence 987666656767777788999999954 6677777999999999999996643
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.6e-08 Score=109.75 Aligned_cols=257 Identities=9% Similarity=0.045 Sum_probs=161.6
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+++++++.+.. + +++ +++|+++++..++.++.. +.-.|+++...|.+...++...|
T Consensus 93 l~~~la~~~g~-~--~v~--~~~ggt~a~~~~~~~~~~-------------------~gd~V~~~~p~~~~~~~~~~~~g 148 (398)
T 3a2b_A 93 LEEKLSAYVGK-E--AAI--LFSTGFQSNLGPLSCLMG-------------------RNDYILLDERDHASIIDGSRLSF 148 (398)
T ss_dssp HHHHHHHHHTC-S--EEE--EESSHHHHHHHHHHHSSC-------------------TTCEEEEETTCCHHHHHHHHHSS
T ss_pred HHHHHHHHhCC-C--cEE--EECCHHHHHHHHHHHHhC-------------------CCCEEEECCccCHHHHHHHHHcC
Confidence 34445554443 2 455 788999999988776511 12358888999999999999999
Q ss_pred ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc--------hhhh-----h-----c---------
Q psy852 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS--------CYRK-----S-----Q--------- 577 (891)
Q Consensus 528 v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c~~~-----l-----d--------- 577 (891)
.+++.+|. +|+++|++++++........+++... .|++. |.++ + .
T Consensus 149 ~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 223 (398)
T 3a2b_A 149 SKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAG 223 (398)
T ss_dssp SEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCC
T ss_pred CceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCc
Confidence 99999987 68999999998632101112222222 34443 3331 1 1
Q ss_pred -----CC-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCcccccccccchHHHHH
Q psy852 578 -----GI-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV 650 (891)
Q Consensus 578 -----Gi-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~ 650 (891)
++ +++|.+..++||+++ |.| |+++.+++ .+ +.+.. ...|.... + ........+..+
T Consensus 224 ~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~~-~~-~~l~~~~~~~~~~~----------~---~~~~~~a~~~~~ 286 (398)
T 3a2b_A 224 TASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGDAD-VI-DFLKHNARSVMFSA----------S---MTPASVASTLKA 286 (398)
T ss_dssp HHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEECHH-HH-HHHHHHCHHHHSSB----------C---CCHHHHHHHHHH
T ss_pred hHhhcCCCcCCeEEEeccccccc-CCC-cEEEeCHH-HH-HHHHHhcccceecC----------C---CCHHHHHHHHHH
Confidence 11 136899999999998 666 88877542 22 22211 11111000 0 011111122334
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 651 IRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 651 L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
|+.+ +.+.+..++..++++++.+.|++. ++++.. +..+++++.++. +....++.+.|.++|+.+..+...
T Consensus 287 l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~g~~~~~~~~~------~~~~~~l~~~l~~~gi~v~~~~~~ 356 (398)
T 3a2b_A 287 LEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLGA-TESPILPIFIRS------NEKTFWVTKMLQDDGVFVNPVVSP 356 (398)
T ss_dssp HHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBCS-CCSSEEEEECCC------HHHHHHHHHHHHHTTEECEEECTT
T ss_pred HHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcCC-CCCCEEEEEcCC------HHHHHHHHHHHHHCCcEEEeeCCC
Confidence 4432 234567778888999999999887 777654 456788888742 224567889998889875544332
Q ss_pred ---cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 ---EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 ---~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+...+ ++++..+++++++++++.|++++.
T Consensus 357 ~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 390 (398)
T 3a2b_A 357 AVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFK 390 (398)
T ss_dssp TSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 134566 999988999999999999998763
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-08 Score=112.26 Aligned_cols=82 Identities=9% Similarity=0.095 Sum_probs=69.4
Q ss_pred EEEecCCCChHHHH----HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~k----aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+... .+...|.+++.++.+ |+++|++.+++. +.+|+++..+|.+|.+.|+++|++
T Consensus 103 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------t~~v~l~~p~NptG~v~~l~~i~~ 171 (404)
T 1e5e_A 103 HLISDECLYGCTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVCK 171 (404)
T ss_dssp EEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCC------CcEEEEECCCCCCCcccCHHHHHH
Confidence 47888899999888 455677899999876 889999888653 457888899999999999999999
Q ss_pred HHHH-cCCceeeeccccC
Q psy852 220 VAKE-FDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~-~~~~lHvDaA~GG 236 (891)
+|++ +|+++++|.+|+.
T Consensus 172 la~~~~~~~li~De~~~~ 189 (404)
T 1e5e_A 172 DAHSQEGVLVIADNTFCS 189 (404)
T ss_dssp HHHTSTTCEEEEECTTTC
T ss_pred HHHhhcCCEEEEECCCch
Confidence 9999 9999999998843
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-08 Score=108.32 Aligned_cols=87 Identities=11% Similarity=-0.040 Sum_probs=72.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~ 221 (891)
|+++.-+|.+...++...|.+++.+++++++.+++++|++.+++ . .+|+++..+|.+|.+-| +.+|+++|
T Consensus 101 vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~------~~v~i~~p~nptG~~~~~~~l~~i~~~~ 173 (361)
T 3ftb_A 101 ILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-V------DSVIIGNPNNPNGGLINKEKFIHVLKLA 173 (361)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-C------SEEEEETTBTTTTBCCCHHHHHHHHHHH
T ss_pred EEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-C------CEEEEeCCCCCCCCCCCHHHHHHHHHHh
Confidence 77777889999888887788999999999999999999998865 2 36777888999999976 56677788
Q ss_pred HHcCCceeeeccccCCc
Q psy852 222 KEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~~ 238 (891)
+++|+++++|.+++++.
T Consensus 174 ~~~~~~li~De~~~~~~ 190 (361)
T 3ftb_A 174 EEKKKTIIIDEAFIEFT 190 (361)
T ss_dssp HHHTCEEEEECSSGGGT
T ss_pred hhcCCEEEEECcchhhc
Confidence 89999999999996543
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-08 Score=110.57 Aligned_cols=157 Identities=9% Similarity=-0.025 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSL 109 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~ 109 (891)
.|.+...+...+ ......|.......++++.+.+++++..|++.+. +.+ .++
T Consensus 46 ~~~v~~a~~~~~-~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------------~~v--------------~~t 97 (391)
T 3h14_A 46 PRGAVEALAKSL-ETDALGYTVALGLPALRQRIARLYGEWYGVDLDP-------------GRV--------------VIT 97 (391)
T ss_dssp CHHHHHHHHHHH-C----------CCHHHHHHHHHHHHHHHCCCCCG-------------GGE--------------EEE
T ss_pred CHHHHHHHHHHH-hcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCH-------------HHE--------------EEe
Confidence 455555544433 3222233223335789999999999999976431 111 145
Q ss_pred cchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCC--cccHHHHHHHHH
Q psy852 110 GGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN--SLRGATLRQVMQ 187 (891)
Q Consensus 110 ~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g--~id~~~L~~~l~ 187 (891)
+||+...++.+..+ . . +...|++..-+|.+...++...+.+++.+++++++ .+|+++|++.
T Consensus 98 ~g~~~al~~~~~~l-~-~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~-- 160 (391)
T 3h14_A 98 PGSSGGFLLAFTAL-F-D-------------SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL-- 160 (391)
T ss_dssp SSHHHHHHHHHHHH-C-C-------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS--
T ss_pred cChHHHHHHHHHHh-c-C-------------CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc--
Confidence 67765433332222 1 1 11237777888999998888788899999998754 6899999876
Q ss_pred hhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCCc
Q psy852 188 QDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 188 ~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
. +.+|+++..+|.+|.+-| +++|+++|+++|+++++|.+|+++.
T Consensus 161 -~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~ 207 (391)
T 3h14_A 161 -D------LAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIE 207 (391)
T ss_dssp -C------CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred -C------CeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcc
Confidence 1 346777788999999988 8889999999999999999996543
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-08 Score=111.60 Aligned_cols=273 Identities=13% Similarity=0.072 Sum_probs=164.3
Q ss_pred HHHHHHHhhccCCccccccCCCCCc-chhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSA-SECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsgg-sean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
+.+.+++.+...+.-+++ +++|+ ++++..++...-. .| .+..+|+++...|++... +...
T Consensus 53 l~~~la~~~g~~~~~~v~--~~~g~gt~al~~~~~~l~~--------------~~--~~g~~vi~~~~~~~~~~~-~~~~ 113 (360)
T 1w23_A 53 AQNLLRELLQIPNDYQIL--FLQGGASLQFTMLPMNLLT--------------KG--TIGNYVLTGSWSEKALKE-AKLL 113 (360)
T ss_dssp HHHHHHHHHTCCTTEEEE--EESSHHHHHHHHHHHHHCC--------------TT--CEEEEEECSHHHHHHHHH-HHTT
T ss_pred HHHHHHHHhCCCCCceEE--EECCcchHHHHHHHHHhcC--------------CC--CcccEEEecchhHHHHHH-HHHh
Confidence 444555555543222555 67777 8888776654211 01 122367888889988544 4555
Q ss_pred CceEEEecCCC-CCCcCHHHHHH-HHHhhhhcCCccEEEE---ecCCccc---hhh-----hhcC----------CCCcc
Q psy852 527 FVRLKILEPDD-KNSLRGATLRQ-VMQQDETMGYIPFFVS---TTLGTTS---CYR-----KSQG----------IEYAD 583 (891)
Q Consensus 527 gv~v~~Vp~d~-~G~mD~~~Le~-aI~~d~~~g~ip~~Vv---ataGTT~---c~~-----~ldG----------i~~aD 583 (891)
| +++.+|.++ +|.+|+++|++ +|++.+ ..++++ +..|... +.+ .+|+ +...|
T Consensus 114 g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~----k~v~~~~~~nptG~~~~~i~~~~~~~li~D~a~~~~~~~~~~~~~d 188 (360)
T 1w23_A 114 G-ETHIAASTKANSYQSIPDFSEFQLNEND----AYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFG 188 (360)
T ss_dssp S-EEEEEEECGGGTSCSCCCGGGCCCCTTE----EEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCS
T ss_pred C-CeEEeecccccCcCCccchHhhccCCCC----CEEEEeCCCCCcceecccccccCCceEEEechhhcCCCCcCcccCC
Confidence 7 999999986 77899999988 775422 122222 2356542 111 1121 22238
Q ss_pred EEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHh-hHH
Q psy852 584 SFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS-GLQ 660 (891)
Q Consensus 584 SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~-G~~ 660 (891)
.++.++||+++ |.|+|+++++++. + +.+. ....|+.... ........ ++-. ...+.+..+++.+... +++
T Consensus 189 i~~~s~sK~~~-~~G~G~~~~~~~~-~-~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~al~~~~~~~~~~ 261 (360)
T 1w23_A 189 MIYAGAQKNLG-PSGVTVVIVKKDL-L-NTKVEQVPTMLQYAT---HIKSDSLY-NTPPTFSIYMLRNVLDWIKDLGGAE 261 (360)
T ss_dssp EEEEETTTTTS-CTTCEEEEEEHHH-H-CSCCTTCCGGGCHHH---HHHTTTCS-SCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred EEEEEcccccC-CCCcEEEEEcHHH-H-hhcccCCcchhhhhh---hhhccCCC-CCCCHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999887 7799999998652 1 1111 1111110000 00000000 1111 1223455566665555 788
Q ss_pred HHHHHHHHHHHHHHHHhccCCCc-EEeCCC--cee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRF-EISNDV--RLG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~-eil~~~--~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
++.++..++++++.+.|++.+++ ....++ ..+ +++|++++. ....++.+.|.+.|+....+.. ....+
T Consensus 262 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~~--~~~~i 333 (360)
T 1w23_A 262 AIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE------ELNQQFLAKAKEQGFVGLNGHR--SVGGC 333 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH------HHHHHHHHHHHHTTEESCBCCT--TTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCC------ccHHHHHHHHHHCCeeeecCCC--CCCeE
Confidence 89999999999999999998765 654223 345 888988531 2346788888889987533222 13346
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++..++++|++++++.|+++.
T Consensus 334 Ris~~~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 334 RASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=113.45 Aligned_cols=247 Identities=12% Similarity=0.039 Sum_probs=157.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+++ +++|+++++..++.+... +.-.|+++..+|.+...++...|.+++.+|.++ ++.
T Consensus 92 ~v~--~~~g~~~a~~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 150 (388)
T 1j32_A 92 NIL--VTNGGKQSIFNLMLAMIE-------------------PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFK 150 (388)
T ss_dssp GEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTC
T ss_pred hEE--EcCCHHHHHHHHHHHhcC-------------------CCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCC
Confidence 455 678999999988876521 112578888899999999888899999999875 578
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C--------C----C
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G--------I----E 580 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G--------i----~ 580 (891)
+|+++|+++|++++ ..++++. ..|... |.++ +| | + .
T Consensus 151 ~d~~~l~~~l~~~~----~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 226 (388)
T 1j32_A 151 VSPEQIRQAITPKT----KLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAY 226 (388)
T ss_dssp CCHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred CCHHHHHHhcCcCc----eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcccccc
Confidence 99999999997531 1222222 245542 3331 22 1 1 1
Q ss_pred CccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHh
Q psy852 581 YADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLS 657 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~ 657 (891)
..|.+..++||+++.| ..+|+++.+++ +.+.+.....+ ..++ ...+.+++++..+ +.+
T Consensus 227 ~~~~~~~s~sK~~~~~G~r~G~~~~~~~--~~~~l~~~~~~-----------~~~~------~~~~~~~a~~~~l~~~~~ 287 (388)
T 1j32_A 227 ERSVVCSGFAKTYAMTGWRVGFLAGPVP--LVKAATKIQGH-----------STSN------VCTFAQYGAIAAYENSQD 287 (388)
T ss_dssp HTEEEEEESTTTTTCTTTCCEEEECCHH--HHHHHHHHHHT-----------TTCS------CCHHHHHHHHHHHHSCSH
T ss_pred CCEEEEeechhccCCcccceEEEEeCHH--HHHHHHHHHhh-----------cccC------CCHHHHHHHHHHHhCCcH
Confidence 2578999999999644 33899987643 22222110000 0011 1124444444444 345
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeeccccCCeEE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQEQNDEV 736 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~~g~~~l 736 (891)
.+++..++..++++++.+.|++.+++++..+.....+++++... +....++.+.|.+ .|+.+..+........+
T Consensus 288 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~i 362 (388)
T 1j32_A 288 CVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKT-----GRSSLDFCSELLDQHQVATVPGAAFGADDCI 362 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGG-----TCCHHHHHHHHHHHHCEECEEGGGGTCTTBE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCC-----CCCHHHHHHHHHHhCCEEEeChhhhCCCCcE
Confidence 57778888899999999999998888876543333344444311 1235678888875 69876554443323456
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+++. +++++|+++++.|+++.+
T Consensus 363 Ris~~--~~~~~i~~~~~~l~~~l~ 385 (388)
T 1j32_A 363 RLSYA--TDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp EEECC--SCHHHHHHHHHHHHHHHH
T ss_pred EEEec--CCHHHHHHHHHHHHHHHH
Confidence 8875 689999999999987763
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.7e-08 Score=105.14 Aligned_cols=250 Identities=9% Similarity=0.030 Sum_probs=160.7
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCc
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV 528 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv 528 (891)
.+.+++.+...+. +++ +++|+++++..++.+... +.-.|+++.-.|.+...++...|.
T Consensus 73 r~~la~~~~~~~~-~v~--~~~g~t~a~~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~g~ 130 (363)
T 3ffh_A 73 RKEVADFYQLEEE-ELI--FTAGVDELIELLTRVLLD-------------------TTTNTVMATPTFVQYRQNALIEGA 130 (363)
T ss_dssp HHHHHHHHTCCGG-GEE--EESSHHHHHHHHHHHHCS-------------------TTCEEEEEESSCHHHHHHHHHHTC
T ss_pred HHHHHHHhCCChh-hEE--EeCCHHHHHHHHHHHHcc-------------------CCCEEEEcCCChHHHHHHHHHcCC
Confidence 3344444443333 566 788999999888765310 112477777889999999988899
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhh----hhcCC-----------
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYR----KSQGI----------- 579 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~----~ldGi----------- 579 (891)
+++.+|.++++.+|+++|++++++++ ..++++. ..|+.. |.+ .+|.+
T Consensus 131 ~~~~v~~~~~~~~d~~~l~~~i~~~~----~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~ 206 (363)
T 3ffh_A 131 EVREIPLLQDGEHDLEGMLNAIDEKT----TIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEK 206 (363)
T ss_dssp EEEEEECCTTSCCCHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCC
T ss_pred EEEEecCCCCCCcCHHHHHHhcccCC----CEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccC
Confidence 99999999899999999999997532 1233322 245443 211 01111
Q ss_pred -------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHH
Q psy852 580 -------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV 650 (891)
Q Consensus 580 -------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~ 650 (891)
..-+-+..+.+|+++.| ..+|+++.++ +.. +.+. .... ++ ...+.+++.
T Consensus 207 ~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~-~~l~~~~~~--------------~~------~~~~~~~~~ 264 (363)
T 3ffh_A 207 HEKLVRTYKNLIITRTFSKIYGLASARVGYGIADK-EII-RQLNIVRPP--------------FN------TTSIGQKLA 264 (363)
T ss_dssp CGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECH-HHH-HHHHHTCCS--------------CC------CBHHHHHHH
T ss_pred HHHHhhcCCCEEEEeechhhhcCchhceeeeecCH-HHH-HHHHHhCCC--------------CC------CCHHHHHHH
Confidence 11123467888998743 4569988843 222 2221 1100 11 122334444
Q ss_pred HHHHH-HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 651 IRTYG-LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 651 L~~lG-~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
...+. .+.+++..++..++++++.+.|++.+++++. ++..+.+++++.. ...++.+.|.++|+.+..+..
T Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~g~~ 335 (363)
T 3ffh_A 265 IEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLY-PANGNFVLIDLGI--------EAGTIFSYLEKNGYITRSGAA 335 (363)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC-CCCSSEEEEECSS--------CHHHHHHHHHHTTEECEETTT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC-CCCCeEEEEECCC--------CHHHHHHHHHHCCeEEEeCcc
Confidence 44442 2556777888899999999999997888876 4456678888752 356788889889987555544
Q ss_pred ccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 730 QEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 730 ~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
......+ ++++ |++|+++++++|+++
T Consensus 336 ~~~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 336 LGFPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp TTCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 3334566 8876 899999999999865
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.2e-09 Score=114.10 Aligned_cols=161 Identities=11% Similarity=0.094 Sum_probs=100.8
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHhcCCCC-CccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 16 QHPRFHAYFPSGNSYPSVLADMLSDAIGCIG-FSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 16 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~-~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
.+..|++.-+. +..+.++.+++.......+ ..+...|...++|. ++++++|.+.. +
T Consensus 10 ~~~~~l~~~~~-p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~----~la~~~~~~~~----------i-------- 66 (357)
T 3lws_A 10 QQTTGQISGHG-KRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQ----KFADVLGMDDA----------V-------- 66 (357)
T ss_dssp HTCSEESSBSS-CCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHH----HHHHHHTCSEE----------E--------
T ss_pred HhhcccccCCC-CCCHHHHHHHHHHhhcccCcccccCChHHHHHHH----HHHHHhCCCcE----------E--------
Confidence 34556666544 4566677776665321111 22333466666664 67777776432 1
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH---HHHcCCeEEEEec
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA---AMMAFVRLKILEP 171 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka---a~~~~~~v~~V~~ 171 (891)
++++|+.. +...+...... + .+.+|+++...|++.... +...+.+++.|+.
T Consensus 67 -------------~~~~G~~a-~~~al~~~~~~-g-----------d~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 120 (357)
T 3lws_A 67 -------------FFPSGTMA-QQVALRIWSDE-T-----------DNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA 120 (357)
T ss_dssp -------------EESCHHHH-HHHHHHHHHHH-H-----------TCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC
T ss_pred -------------EecCcHHH-HHHHHHHHhhc-C-----------CCcEEEecccceeeeeccchhhhccCcEEEEecC
Confidence 23577643 33222222221 1 112478888889887652 3456778888884
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc-ccccC---HHHHHHHHHHcCCceeeeccc
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-CSFDN---LAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~-GavDp---l~~I~~i~~~~~~~lHvDaA~ 234 (891)
+++.+|+++|+++.+ +.+|+++..+|.+ |.+-| +++|+++|+++|++||+|+|+
T Consensus 121 -~~~~~d~~~l~~~~~--------~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~ 178 (357)
T 3lws_A 121 -ADRLMTLDEIKALPD--------IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGAR 178 (357)
T ss_dssp -TTSCCCHHHHHTCCS--------CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred -CCCCcCHHHHhcCcC--------cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECch
Confidence 568899999998621 2356666666666 88765 889999999999999999988
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-08 Score=110.33 Aligned_cols=244 Identities=8% Similarity=0.014 Sum_probs=153.0
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH-HH--HHcC--ceEEEecCC-CCCCcCH
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK-AA--MMAF--VRLKILEPD-DKNSLRG 543 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K-aa--~l~g--v~v~~Vp~d-~~G~mD~ 543 (891)
++|++++..++.++.. +.-.|+++...|.+... .+ .+.| .+++.++.+ .++.+|+
T Consensus 92 ~sGt~a~~~a~~~~~~-------------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 152 (405)
T 2vi8_A 92 HSGAQANMAVYFTVLE-------------------HGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDY 152 (405)
T ss_dssp SSHHHHHHHHHHHHCC-------------------TTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCH
T ss_pred cCcHHHHHHHHHHhcC-------------------CCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCH
Confidence 3449999988877521 11246777778877643 11 2333 377777776 6789999
Q ss_pred HHHHHHHHhhhhcCCccEEEE-ecCCccc--------hhhh-----hc----------C-----CCCccEEEEcCcccCC
Q psy852 544 ATLRQVMQQDETMGYIPFFVS-TTLGTTS--------CYRK-----SQ----------G-----IEYADSFNVNVNKWLL 594 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv-ataGTT~--------c~~~-----ld----------G-----i~~aDSIs~d~HK~L~ 594 (891)
++|+++|++.. ...++++ ...|... |.++ +| + ++.+|.+..++||+++
T Consensus 153 ~~l~~~i~~~~---~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~ 229 (405)
T 2vi8_A 153 DDVREKARLHR---PKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLR 229 (405)
T ss_dssp HHHHHHHHHHC---CSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTC
T ss_pred HHHHHHHHhcC---CeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCC
Confidence 99999998631 1122222 2234332 4331 11 1 2368999999999999
Q ss_pred cccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCccccc-ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy852 595 TAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLS-RRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672 (891)
Q Consensus 595 ~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~S-Rr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~ 672 (891)
+|.| |+++.+++ +.+.+.. ...|. . ++ -......+..+++.+...++++..++..+++++
T Consensus 230 g~~g-G~~~~~~~--~~~~l~~~~~~~~--------------~-~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~ 291 (405)
T 2vi8_A 230 GPRG-GMILCQEQ--FAKQIDKAIFPGI--------------Q-GGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKR 291 (405)
T ss_dssp CCSC-EEEEECHH--HHHHHHHHHTTTT--------------C-SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred CCCC-eEEEEcHH--HHHHHHhhhcccc--------------c-CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8888 88888632 2222211 00110 0 01 011222334555554556888999999999999
Q ss_pred HHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc------ccCCeEE-EEecC---
Q psy852 673 FEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS------QEQNDEV-FELQE--- 741 (891)
Q Consensus 673 L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~------~~g~~~l-~sv~~--- 741 (891)
+.+.|++. +++++.+ ...+++++++.+. +.....+.+.|.+.|+....+.. ......+ ++++.
T Consensus 292 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~ 365 (405)
T 2vi8_A 292 LASALQNE-GFTLVSGGTDNHLLLVDLRPQ-----QLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTT 365 (405)
T ss_dssp HHHHHHHT-TCEEGGGSCSSSEEEEECGGG-----TCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHH
T ss_pred HHHHHHhC-CCeEecCCCCceEEEEEccCC-----CCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeee
Confidence 99999987 8888764 3567888888532 11345778888888987554321 1123356 88775
Q ss_pred -CCCHHHHHHHHHHHHHHH
Q psy852 742 -RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 742 -~tT~edId~li~~L~ei~ 759 (891)
.++++|++++++.|+++.
T Consensus 366 ~~~~~~~i~~~~~~l~~~~ 384 (405)
T 2vi8_A 366 RGFGLEEMDEIAAIIGLVL 384 (405)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 578999999999999876
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-08 Score=113.53 Aligned_cols=262 Identities=12% Similarity=0.068 Sum_probs=158.1
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH----H
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----M 525 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~----l 525 (891)
+.+++.+.. + +++ +++||++++..++.++. + +.-.|+++..+|.+....+. .
T Consensus 63 ~~la~~~g~-~--~~~--~~~~gt~a~~~al~~l~----~---------------~gd~vi~~~~~~~~~~~~~~~~~~~ 118 (412)
T 2cb1_A 63 ERLKALEGA-L--EAV--VLASGQAATFAALLALL----R---------------PGDEVVAAKGLFGQTIGLFGQVLSL 118 (412)
T ss_dssp HHHHHHHTC-S--EEE--EESSHHHHHHHHHHTTC----C---------------TTCEEEEETTCCHHHHHHHHHTTTT
T ss_pred HHHHHHhCC-C--cEE--EECCHHHHHHHHHHHHh----C---------------CCCEEEEeCCCchhHHHHHHHHHHH
Confidence 345555543 2 455 67899999998887641 0 12257888889988777653 3
Q ss_pred cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hc-----C-C----
Q psy852 526 AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQ-----G-I---- 579 (891)
Q Consensus 526 ~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ld-----G-i---- 579 (891)
.|++++.+|.| +++|+++|++++ ..+++. +..|... |+++ +| + .
T Consensus 119 ~g~~~~~~~~~------~~~l~~~i~~~~----~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~ 188 (412)
T 2cb1_A 119 MGVTVRYVDPE------PEAVREALSAKT----RAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRP 188 (412)
T ss_dssp TTCEEEEECSS------HHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCG
T ss_pred cCCEEEEECCC------HHHHHHHhccCC----eEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCc
Confidence 67889999875 889999887532 122222 2234443 4431 11 1 1
Q ss_pred --CCccEEEEcCcccCCcccc-cEEEEEeCCcc-chhhhccCCCccccC--------CCCCccccCCcc-cccccccchH
Q psy852 580 --EYADSFNVNVNKWLLTAFD-SSCLWVADRYK-LTSALVVDPLYLQHG--------HEGAIDYRHWGI-PLSRRFRSLK 646 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g-~G~llvR~~~~-L~~~l~~~~~Yl~~~--------~e~~~~~~~~ti-~~SRr~~aL~ 646 (891)
..+|.++.++||++++|.+ +|.++++++.. ........+...... .+-......+++ ..+-...++.
T Consensus 189 ~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~ 268 (412)
T 2cb1_A 189 LAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFN 268 (412)
T ss_dssp GGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHH
T ss_pred cccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHH
Confidence 2479999999999999987 88888877431 100000000000000 000000000010 0011233455
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-C----------------CceeEEEEEecCCcchhhhhh
Q psy852 647 LWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-D----------------VRLGLVCFRLRSENNLIADQN 709 (891)
Q Consensus 647 lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~----------------~~~~iV~Fr~~~~~~~~~d~l 709 (891)
.|+.+. +.+.+.+.+++..+++++|.+.|++.++++++. + ...++++|.+ +.
T Consensus 269 a~~~~~--~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~-------- 337 (412)
T 2cb1_A 269 AYLLFQ--GLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GD-------- 337 (412)
T ss_dssp HHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS--------
T ss_pred hHHHHc--CCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CC--------
Confidence 555554 556677888888899999999999999988552 2 1357999999 42
Q ss_pred HHHHHHHHHhCCcEEEeec---------ccc---------------C--CeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 710 NRKLLEDINASGRLHMVPA---------SQE---------------Q--NDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~s---------~~~---------------g--~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
.+.+...|.+.|++. .++ .+. + ...+ +|++.++++++|+.+.++|++
T Consensus 338 ~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 338 LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 245666677778876 442 110 1 4567 999999999999999998864
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-08 Score=112.71 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCCCCC-----c-cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q psy852 30 YPSVLADMLSDAIGCIGF-----S-WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPA 103 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~-----~-~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~ 103 (891)
.|.++..+...+.|.... . +...+....+|....+++++++|.+....
T Consensus 58 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v-------------------------- 111 (447)
T 3h7f_A 58 PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANV-------------------------- 111 (447)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC--------------------------
T ss_pred CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEE--------------------------
Confidence 566666665544332211 1 22345556777777799999999875321
Q ss_pred CCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChH-HHHH--H-HH-cCCeEEEEecC-CCCcc
Q psy852 104 NQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSC-VEKA--A-MM-AFVRLKILEPD-DKNSL 177 (891)
Q Consensus 104 ~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~S-v~ka--a-~~-~~~~v~~V~~d-~~g~i 177 (891)
.+++|+. .+...+...+. +...|+++..+|.+ +... + .. ....++.++++ +++.+
T Consensus 112 ----~~~sGs~-a~~~a~~~~~~--------------~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 172 (447)
T 3h7f_A 112 ----QPHSGAQ-ANAAVLHALMS--------------PGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLI 172 (447)
T ss_dssp ----CCSSHHH-HHHHHHHHHCC--------------TTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSC
T ss_pred ----EeCCHHH-HHHHHHHHhcC--------------CCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCc
Confidence 1346664 33333322221 11236666666655 2111 1 11 23456677776 56889
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
|+++|++.+++.. |.+|+++..++.++. |+++|+++|+++|++||+|.|+
T Consensus 173 d~~~l~~~i~~~~-----~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~ 222 (447)
T 3h7f_A 173 DMDAVRATALEFR-----PKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAH 222 (447)
T ss_dssp CHHHHHHHHHHHC-----CSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTT
T ss_pred CHHHHHHHHHhcC-----CeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCc
Confidence 9999999997542 335555555554443 9999999999999999999987
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-08 Score=110.75 Aligned_cols=277 Identities=12% Similarity=0.058 Sum_probs=151.8
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchH-HHHHHHHHcC
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHS-CVEKAAMMAF 527 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~-Sv~Kaa~l~g 527 (891)
.+.+++.+.. + +++ +++||++++..++.+++...... |- .+..|+++ ..|+ +...++...|
T Consensus 82 ~~~la~~~~~-~--~v~--~t~ggt~A~~~al~~~~~~~~~~----------Gd--~~~~viv~-~~~~~~~~~~~~~~g 143 (467)
T 1ax4_A 82 KDKAKELFNY-D--YII--PAHQGRGAENILFPVLLKYKQKE----------GK--AKNPVFIS-NFHFDTTAAHVELNG 143 (467)
T ss_dssp HHHHHHHHCC-C--EEE--EESSHHHHHHHHHHHHHHHHHHT----------TC--CSSCEEEE-SSCCHHHHHHHHHTT
T ss_pred HHHHHHHcCC-C--cEE--EcCCcHHHHHHHHHHHHHhhccC----------CC--ccceEEEe-ccccchhhHHHhccC
Confidence 3344455543 2 455 78899999999999887633111 10 01124555 6674 4445556777
Q ss_pred ceEEEecCC----------CCCCcCHHHHHHHHHhhhhcCCccEEEE-ec---C-Cccc-----------hhhh-----h
Q psy852 528 VRLKILEPD----------DKNSLRGATLRQVMQQDETMGYIPFFVS-TT---L-GTTS-----------CYRK-----S 576 (891)
Q Consensus 528 v~v~~Vp~d----------~~G~mD~~~Le~aI~~d~~~g~ip~~Vv-at---a-GTT~-----------c~~~-----l 576 (891)
.+++.++.+ .++.+|+++|+++|++... ..+.++++ .. . |.+. |.+| .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~-~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~ 222 (467)
T 1ax4_A 144 CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA-DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVM 222 (467)
T ss_dssp CEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CceecccccccccccccCCcccccCHHHHHHHHHhcCC-CCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEE
Confidence 777766542 1578999999999986420 11223332 22 3 4432 4331 2
Q ss_pred c-------------------CC----------CCccEEEEcCcccCCcccccEEEEEeCC-ccchhhhccCCCccccCCC
Q psy852 577 Q-------------------GI----------EYADSFNVNVNKWLLTAFDSSCLWVADR-YKLTSALVVDPLYLQHGHE 626 (891)
Q Consensus 577 d-------------------Gi----------~~aDSIs~d~HK~L~~P~g~G~llvR~~-~~L~~~l~~~~~Yl~~~~e 626 (891)
| |+ ..+|.+++++||+++.|.| |+++.+++ +.+.........+ .+.
T Consensus 223 De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~--~~~- 298 (467)
T 1ax4_A 223 DSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM--EGF- 298 (467)
T ss_dssp ECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH--TCS-
T ss_pred EchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccc--ccc-
Confidence 2 22 2478999999999998855 55555545 4332211111111 000
Q ss_pred CCccccCCcccccccccch-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc--c
Q psy852 627 GAIDYRHWGIPLSRRFRSL-KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN--N 703 (891)
Q Consensus 627 ~~~~~~~~ti~~SRr~~aL-~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~--~ 703 (891)
..++ +.....+ .+...++..- + .+.+++..++++++.+.|++ ++++++.+.....+.+.+.... .
T Consensus 299 -----~~~~---~~~~~~~~a~~~~l~~~~-~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (467)
T 1ax4_A 299 -----VTYG---GLAGRDMAAMVQGLEEGT-E--EEYLHYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQI 366 (467)
T ss_dssp -----TTTT---TCCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTTS
T ss_pred -----cccC---CccchHHHHHHHHHHHhh-h--hhHHHHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhcccc
Confidence 0000 1111111 1111222111 1 23455556778889999987 5777766656667777731100 0
Q ss_pred hhhhhhHHHHHHHH-HhCCcEEEe-eccc--c----C------CeEE-EEecC-CCCHHHHHHHHHHHHHHHH
Q psy852 704 LIADQNNRKLLEDI-NASGRLHMV-PASQ--E----Q------NDEV-FELQE-RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 704 ~~~d~ln~~L~~~L-~~~G~~~~s-~s~~--~----g------~~~l-~sv~~-~tT~edId~li~~L~ei~~ 760 (891)
...+.....+.+.| .+.|+.+.. +... . + ...+ +++.. .+|++||+++++.|+++..
T Consensus 367 ~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 439 (467)
T 1ax4_A 367 PGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE 439 (467)
T ss_dssp CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred ccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 00012356788888 788987554 2210 0 1 2567 98875 4899999999999998764
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-08 Score=108.68 Aligned_cols=84 Identities=20% Similarity=0.156 Sum_probs=71.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++...|.+...++...+.+++.+|. +|+++|++.+++... .+.+|++...+|.+|.+.|+++|+++|++
T Consensus 125 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 196 (384)
T 1bs0_A 125 RIAADRLSHASLLEAASLSPSQLRRFAH-----NDVTHLARLLASPCP---GQQMVVTEGVFSMDGDSAPLAEIQQVTQQ 196 (384)
T ss_dssp EEEEETTCCHHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSCCS---SCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred EEEEcccccHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHhcCC---CCeEEEEeCCCCCCCCccCHHHHHHHHHH
Confidence 4788888999999998888888888874 589999998875421 24677778888999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.+++
T Consensus 197 ~~~~li~De~~~ 208 (384)
T 1bs0_A 197 HNGWLMVDDAHG 208 (384)
T ss_dssp TTCEEEEECTTT
T ss_pred cCcEEEEECCcc
Confidence 999999999984
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.8e-08 Score=105.80 Aligned_cols=156 Identities=12% Similarity=0.034 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..|.+...+...+-+. ...+.. .. .+++..+.+++.+..|++.+. +.+ .+
T Consensus 37 ~~~~v~~a~~~~~~~~-~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~-------------~~i--------------~~ 86 (377)
T 3fdb_A 37 TCPAVLQAITDAVQRE-AFGYQP-DG-SLLSQATAEFYADRYGYQARP-------------EWI--------------FP 86 (377)
T ss_dssp CCHHHHHHHHHHHHTT-CCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG-------------GGE--------------EE
T ss_pred CCHHHHHHHHHHHHcC-CCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH-------------HHE--------------EE
Confidence 4566665555444321 112222 22 688899999999998876431 111 14
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHh
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQ 188 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~ 188 (891)
++||+...+..+..+ . . +.-.|++..-+|.+...++...+.+++.++.+++ +|+++|++.+++
T Consensus 87 t~g~~~a~~~~~~~~-~-~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~ 149 (377)
T 3fdb_A 87 IPDVVRGLYIAIDHF-T-P-------------AQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG--INLHDVEKGFQA 149 (377)
T ss_dssp ESCHHHHHHHHHHHH-S-C-------------TTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS--CCHHHHHHHHHT
T ss_pred eCChHHHHHHHHHHh-c-C-------------CCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC--CCHHHHHHHhcc
Confidence 567764433322222 1 1 1112677778899998888777889999999887 999999999986
Q ss_pred hhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCC
Q psy852 189 DETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 189 ~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
. +.+|+++..+|.+|.+-| +.+|+++|+++|+++++|.+|+++
T Consensus 150 ~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~ 195 (377)
T 3fdb_A 150 G------ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPL 195 (377)
T ss_dssp T------CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred C------CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchh
Confidence 4 246777777999999965 666777799999999999999653
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-08 Score=112.95 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCc
Q psy852 54 SCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPF 133 (891)
Q Consensus 54 ~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~ 133 (891)
...++++.+.+++.+..|+.... .++.+ .+++||+.. +...+...+.
T Consensus 87 g~~~l~~~la~~~~~~~~~~~~~-----------~~~~v--------------~~~~gg~~a-~~~~~~~l~~------- 133 (435)
T 3piu_A 87 GLPAFKKAMVDFMAEIRGNKVTF-----------DPNHL--------------VLTAGATSA-NETFIFCLAD------- 133 (435)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCC-----------CGGGE--------------EEEEHHHHH-HHHHHHHHCC-------
T ss_pred CcHHHHHHHHHHHHHhhCCCCCC-----------CHHHE--------------EEcCChHHH-HHHHHHHhcC-------
Confidence 34789999999999887743221 01111 145677644 3333222211
Q ss_pred cccccccCCeEEEecCCCChHHHHHHH-HcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc
Q psy852 134 VDEGVLLSKLMAYCSKEAHSCVEKAAM-MAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS 210 (891)
Q Consensus 134 ~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga 210 (891)
+.-.|++....|.+...++. ..+.+++.++.+++ ..+|+++|++.+++....+..+.+|+++..+|.+|.
T Consensus 134 -------~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~ 206 (435)
T 3piu_A 134 -------PGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT 206 (435)
T ss_dssp -------TTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC
T ss_pred -------CCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCC
Confidence 11237777788999988876 67889999998864 458999999999876555555677888888999999
Q ss_pred ccC---HHHHHHHHHHcCCceeeeccccCCc
Q psy852 211 FDN---LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 211 vDp---l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+-| +++|+++|+++|+++++|.+|+++.
T Consensus 207 ~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 237 (435)
T 3piu_A 207 TMTRNELYLLLSFVEDKGIHLISDEIYSGTA 237 (435)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGC
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 954 5888889999999999999996643
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-08 Score=114.53 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=68.5
Q ss_pred EEEecC-CCChHHH-----------HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeec----ccCc
Q psy852 144 MAYCSK-EAHSCVE-----------KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL----GTTS 207 (891)
Q Consensus 144 ~v~~S~-~~H~Sv~-----------kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~----Gtt~ 207 (891)
.|+++. ..|.... +.+...|.+++.|+.+++|.+|+++|++++++. ..+.+|+++. .++.
T Consensus 117 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~----~~tklV~i~~s~~~p~np 192 (427)
T 3i16_A 117 TMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED----ESITLVHIQRSTGYGWRR 192 (427)
T ss_dssp EEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC----TTEEEEEEECSCCSSSSC
T ss_pred EEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC----CCCEEEEEEcCCCCCCCC
Confidence 366666 5665554 233345779999999999999999999999831 0134666666 7899
Q ss_pred cccccCHHHHHHHHHH--cCCceeeecccc
Q psy852 208 CCSFDNLAEIGPVAKE--FDVWLHVDGAYA 235 (891)
Q Consensus 208 ~GavDpl~~I~~i~~~--~~~~lHvDaA~G 235 (891)
+|.+.|+++|+++|++ +|+++|||.||+
T Consensus 193 tg~i~dl~~i~~la~~~~~g~~livD~a~~ 222 (427)
T 3i16_A 193 ALLIEDIKSIVDCVKNIRKDIICFVDNCYG 222 (427)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSEEEEECTTT
T ss_pred cccHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 9999999999999999 888888888884
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=115.88 Aligned_cols=274 Identities=10% Similarity=0.042 Sum_probs=154.4
Q ss_pred HHHHhhccCCc---cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH-----
Q psy852 451 LFEGKVRRDPR---FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----- 522 (891)
Q Consensus 451 ~l~~~L~~~~~---~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka----- 522 (891)
++++.+...+. ..|+ +++|+ ++|+.++.+. .+ +.-.|+++..+|.+....
T Consensus 98 ~~a~~~g~~~~~~~~~V~--~~sGs-~an~~~~~al----l~---------------pGD~Vl~~~~~~~~~~~~~~~~~ 155 (483)
T 1rv3_A 98 RALQAYGLDPQCWGVNVQ--PYSGS-PANFAVYTAL----VE---------------PHGRIMGLDLPDGGHLTHGFMTD 155 (483)
T ss_dssp HHHHHTTCCTTTEEEECC--CSSHH-HHHHHHHHHH----TC---------------TTCEEEEECGGGTCCGGGCCBCS
T ss_pred HHHHHhCCCcccCceEEE--ECCcH-HHHHHHHHHh----cC---------------CCCEEEEecCccCcCcchhhhhc
Confidence 55555554322 2244 55655 7777766543 11 122477777777666432
Q ss_pred ---HHHcC--ceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCc-cc---------hhhh-----hc----
Q psy852 523 ---AMMAF--VRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGT-TS---------CYRK-----SQ---- 577 (891)
Q Consensus 523 ---a~l~g--v~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGT-T~---------c~~~-----ld---- 577 (891)
+.+.| +..+.+++| +++.+|+++|++++.+.. .. ++++..... .. |.++ +|
T Consensus 156 ~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~---tk-lIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~ 231 (483)
T 1rv3_A 156 KKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFH---PK-LIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHI 231 (483)
T ss_dssp SCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC---CS-EEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcC---Cc-EEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccch
Confidence 22333 455555556 679999999999998421 11 222222111 11 3331 12
Q ss_pred ------CC-----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCcccc-CCccccccccc-
Q psy852 578 ------GI-----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYR-HWGIPLSRRFR- 643 (891)
Q Consensus 578 ------Gi-----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~-~~ti~~SRr~~- 643 (891)
|. +.+|.+++++||++.+|.| |+++++++..-...... ...|-. ....+.. ..+.+++-...
T Consensus 232 ~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~g~~~~y~~---~~~~~~~~~~~~~g~~~~~~ 307 (483)
T 1rv3_A 232 SGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNL---ESLINSAVFPGLQGGPHNHA 307 (483)
T ss_dssp HHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCH---HHHHHHHHTTTTCCSCCHHH
T ss_pred hcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhhhccccCcchhhHH---HHHhhhhcCCcccCCccHHH
Confidence 21 2689999999999999999 99999876210000000 000000 0000000 00011111111
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-RLGLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
...+..+++.+...+++++.++..+++++|.+.|++. +++++.+. ....+.+.+.+. +.....+.+.|.+.|+
T Consensus 308 iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~-----g~~~~~~~~~L~~~gI 381 (483)
T 1rv3_A 308 IAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSK-----GTDGGRAEKVLEACSI 381 (483)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGG-----TCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCC-----CCCHHHHHHHHHhCCc
Confidence 2344556666666788999999999999999999987 89987643 223444555422 1134567777888897
Q ss_pred EEE----eecc-ccCCeEE-EEecCCCC----HHHHHHHHHHHHHHHH
Q psy852 723 LHM----VPAS-QEQNDEV-FELQERKR----KDDLAYKRSFFVRMLG 760 (891)
Q Consensus 723 ~~~----s~s~-~~g~~~l-~sv~~~tT----~edId~li~~L~ei~~ 760 (891)
... .+.. ..+...+ +++...+| ++|++++++.|++++.
T Consensus 382 ~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~ 429 (483)
T 1rv3_A 382 ACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 429 (483)
T ss_dssp ECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 744 2211 1133456 88775555 9999999999998864
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=114.13 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=63.6
Q ss_pred EEecCCCChHH-HHHHHHcCCeEEEEecC----------CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc-ccc-
Q psy852 145 AYCSKEAHSCV-EKAAMMAFVRLKILEPD----------DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-CSF- 211 (891)
Q Consensus 145 v~~S~~~H~Sv-~kaa~~~~~~v~~V~~d----------~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~-Gav- 211 (891)
|+++ ..||.. ..++...+.+++.++.+ .+|.+|+++|+++|++.. ...+.+|+++..+|.+ |.+
T Consensus 125 viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~ 201 (467)
T 1ax4_A 125 VFIS-NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPV 201 (467)
T ss_dssp EEEE-SSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCC
T ss_pred EEEe-ccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCC
Confidence 4455 677555 44456667777766532 157899999999998631 0124577778888888 665
Q ss_pred --cCHHHHHHHHHHcCCceeeeccc
Q psy852 212 --DNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 212 --Dpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+++++|+++|++||++||+|+++
T Consensus 202 ~~~~l~~i~~la~~~gi~li~De~~ 226 (467)
T 1ax4_A 202 SMSNLKEVYEIAKQHGIFVVMDSAR 226 (467)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ChhHHHHHHHHHHHcCCEEEEEchh
Confidence 67889999999999999999986
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-08 Score=110.42 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=68.3
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.++..+. ...+.+++.++.+ |+++|++.+++. +.+|+++..+|.+|.+.|+++|++
T Consensus 93 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~ 161 (386)
T 1cs1_A 93 LLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG-----DEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICH 161 (386)
T ss_dssp EEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT-----CHHHHHHHHHTC------CSEEEEECSCTTTCCCCCHHHHHH
T ss_pred EEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC-----CHHHHHHhhccC------CcEEEEeCCCCCCCcccCHHHHHH
Confidence 4778888999876654 2356788888874 899999999753 357778899999999999999999
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++|+++++|.+++++
T Consensus 162 l~~~~~~~li~De~~~~~ 179 (386)
T 1cs1_A 162 LAREVGAVSVVDNTFLSP 179 (386)
T ss_dssp HHHHTTCEEEEECTTTCT
T ss_pred HHHHcCCEEEEECCCccc
Confidence 999999999999998543
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.1e-08 Score=110.45 Aligned_cols=248 Identities=10% Similarity=0.018 Sum_probs=157.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+... +.-.|++..-+|.+...++...|.+++.+|.+++| +|
T Consensus 93 ~v~--~~~g~~~al~~~~~~~~~-------------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d 150 (397)
T 2zyj_A 93 EVL--ITTGSQQALDLVGKVFLD-------------------EGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PD 150 (397)
T ss_dssp GEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-EC
T ss_pred hEE--EeccHHHHHHHHHHHhCC-------------------CCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CC
Confidence 555 788999998887766411 11247777788888888888888999999987766 99
Q ss_pred HHHHHHHHHhhhhcCCccEEEE----ecCCccc-----------hhhh-----hc---------CCC-------Ccc---
Q psy852 543 GATLRQVMQQDETMGYIPFFVS----TTLGTTS-----------CYRK-----SQ---------GIE-------YAD--- 583 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~-----------c~~~-----ld---------Gi~-------~aD--- 583 (891)
+++|+++|++. +...++++ +..|+.. |.++ +| |-. ..|
T Consensus 151 ~~~l~~~l~~~---~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 227 (397)
T 2zyj_A 151 LDALEEVLKRE---RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGY 227 (397)
T ss_dssp HHHHHHHHHHC---CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTC
T ss_pred HHHHHHHHhhc---CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCC
Confidence 99999999862 11222232 2345543 3331 11 110 012
Q ss_pred ---EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH---
Q psy852 584 ---SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL--- 656 (891)
Q Consensus 584 ---SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~--- 656 (891)
-+..++||+++ | ..+|+++.+++ +.+.+.....+ ..++. ..+.++++...+..
T Consensus 228 ~~~i~~~s~sK~~~-~G~r~G~~~~~~~--~~~~l~~~~~~-----------~~~~~------~~~~~~a~~~~l~~~~~ 287 (397)
T 2zyj_A 228 PGVIYLGSFSKVLS-PGLRVAFAVAHPE--ALQKLVQAKQG-----------ADLHT------PMLNQMLVHELLKEGFS 287 (397)
T ss_dssp CCEEEEEESTTTTC-GGGCCEEEECCHH--HHHHHHHHHHH-----------HHSSC------CHHHHHHHHHHHTTTHH
T ss_pred CeEEEEeccccccc-ccceeEEEecCHH--HHHHHHHHHHh-----------hcCCC------CHHHHHHHHHHHHhCCH
Confidence 55778999999 6 67899988633 22222110000 00000 12333333333322
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc-CC-CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc---
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRR-DP-RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--- 731 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~-~~-~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--- 731 (891)
+.+++..++..++++++.+.|++ .+ ++++..+...+.+++++... ....++.+.|.++|+.+..+....
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~g~~f~~~~ 361 (397)
T 2zyj_A 288 ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKG------LSAEGLFRRALEENVAFVPGGPFFANG 361 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTT------CCHHHHHHHHHHTTEEEEESGGGCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCC------CCHHHHHHHHHHCCCEEechHHhcCCC
Confidence 34666677778889999999987 57 58887655566788888531 135678899988998865544331
Q ss_pred -CCeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 732 -QNDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 732 -g~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
+...+ ++++.. ++++|+++++.|+++++.+
T Consensus 362 ~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 362 GGENTLRLSYATL-DREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp CCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 34567 988775 8999999999999887533
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-08 Score=109.63 Aligned_cols=143 Identities=12% Similarity=0.135 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcc
Q psy852 55 CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFV 134 (891)
Q Consensus 55 ~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~ 134 (891)
..++++.+.+++.+.+|++... .|+.+ .+++||+ +.+..++.....
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~-----------~~~~i--------------~~~~G~~-~ai~~~~~~~~~-------- 130 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRF-----------DPERV--------------VMAGGAT-GANETIIFCLAD-------- 130 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCC-----------CTTSC--------------EEEEHHH-HHHHHHHHHHCC--------
T ss_pred cHHHHHHHHHHHHHhcCCCCCC-----------ChhhE--------------EEccChH-HHHHHHHHHhCC--------
Confidence 5789999999999998865221 01111 1345554 333222222211
Q ss_pred ccccccCCeEEEecCCCChHHHHHH-HHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 135 DEGVLLSKLMAYCSKEAHSCVEKAA-MMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 135 ~~g~~~~~~~v~~S~~~H~Sv~kaa-~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
+.-.|+++.-+|.+....+ ...|.+++.++.+. ++.+|+++|++++++....+..+.+|+++..+|.+|.+
T Consensus 131 ------~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~ 204 (428)
T 1iay_A 131 ------PGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTT 204 (428)
T ss_dssp ------TTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCC
T ss_pred ------CCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCc
Confidence 1123777788898887755 35678999999874 34799999999998754444445667777889999999
Q ss_pred cC---HHHHHHHHHHcCCceeeeccccCC
Q psy852 212 DN---LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 212 Dp---l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
-| +++|+++|+++|+++++|.||+++
T Consensus 205 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 233 (428)
T 1iay_A 205 LDKDTLKSVLSFTNQHNIHLVCDEIYAAT 233 (428)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred CCHHHHHHHHHHHHHCCeEEEEecccccc
Confidence 99 999999999999999999999764
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4e-09 Score=114.99 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=68.8
Q ss_pred EEEecCCCChHHHH---HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc-ccccC---HHH
Q psy852 144 MAYCSKEAHSCVEK---AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-CSFDN---LAE 216 (891)
Q Consensus 144 ~v~~S~~~H~Sv~k---aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~-GavDp---l~~ 216 (891)
.|+++..+|++... .+...+.+++.| .+++|.+|+++|++++++....+..+.+|+++..+|.+ |.+-| +++
T Consensus 79 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~ 157 (347)
T 1jg8_A 79 EVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKE 157 (347)
T ss_dssp EEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHH
T ss_pred EEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHH
Confidence 47778889988754 345677788888 66788899999999886421011135678888889998 99866 468
Q ss_pred HHHHHHHcCCceeeeccc
Q psy852 217 IGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 217 I~~i~~~~~~~lHvDaA~ 234 (891)
|+++|+++|++|++|+|+
T Consensus 158 i~~~a~~~~~~li~D~a~ 175 (347)
T 1jg8_A 158 ICTIAKEHGINVHIDGAR 175 (347)
T ss_dssp HHHHHHHHTCEEEEEETT
T ss_pred HHHHHHHCCCEEEeehhh
Confidence 889999999999999987
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-08 Score=113.89 Aligned_cols=80 Identities=9% Similarity=0.013 Sum_probs=67.7
Q ss_pred EEEecCCCChHHHHHHHH----cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMM----AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~----~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+....+.. .+.+++.|+.+ |+++|++++++. +.+|++...+|.+|.+.|+++|++
T Consensus 122 ~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~ai~~~------t~~v~le~p~NptG~~~~l~~i~~ 190 (414)
T 3ndn_A 122 RLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-----DLSQWERALSVP------TQAVFFETPSNPMQSLVDIAAVTE 190 (414)
T ss_dssp EEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----CHHHHHHHTSSC------CSEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCccccHHHHHH
Confidence 477888899988776632 67799999876 899999988654 347777889999999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++++|.+|
T Consensus 191 la~~~g~~livDe~~ 205 (414)
T 3ndn_A 191 LAHAAGAKVVLDNVF 205 (414)
T ss_dssp HHHHTTCEEEEECTT
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999988
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.4e-09 Score=119.76 Aligned_cols=236 Identities=12% Similarity=0.051 Sum_probs=150.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC--CCC----CCc
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP--DDK----NSL 541 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~--d~~----G~m 541 (891)
+++|+|++|..++.++.. +...|+++..+|.++..++.+.|.+++.++. +++ +.+
T Consensus 77 ~~~G~t~a~~~~~~a~~~-------------------~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~~~~ 137 (446)
T 2x3l_A 77 LVNGTTSGILSVIQSFSQ-------------------KKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTNHYNKV 137 (446)
T ss_dssp ESSHHHHHHHHHHHTTTT-------------------SSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSSEEEE
T ss_pred EeCCHHHHHHHHHHHhcC-------------------CCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCcCCCC
Confidence 678889999988877511 1235889999999999999988999999988 765 789
Q ss_pred CHHHHHHHHHhhhhcCCccEEEEe--cCCccc--------hhhh-----hcCC----------------CCccEEEEcCc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVST--TLGTTS--------CYRK-----SQGI----------------EYADSFNVNVN 590 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vva--taGTT~--------c~~~-----ldGi----------------~~aDSIs~d~H 590 (891)
|+++| +..+ ...++++. ..|+.. |+++ +|.+ ..+|.++.|+|
T Consensus 138 d~~~l---~~~~----~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~ 210 (446)
T 2x3l_A 138 NLSRL---NNDG----HKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFH 210 (446)
T ss_dssp EC--------------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHH
T ss_pred CHHHH---cCCC----ceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCc
Confidence 99988 3221 12223332 134443 4331 2211 13799999999
Q ss_pred ccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc-cchHHHHHHHHHHHhhHHHHHHHHHHH
Q psy852 591 KWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCEL 669 (891)
Q Consensus 591 K~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~-~aL~lW~~L~~lG~~G~~~~i~~~~~l 669 (891)
|++++|.++|+++++++..-...+........ ..+... ....++.+++.+...|.++..++..++
T Consensus 211 K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~--------------~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l 276 (446)
T 2x3l_A 211 KTLPALTMGSVLYIHKNAPYRENIIEYLSYFQ--------------TSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQL 276 (446)
T ss_dssp HHSSSCTTCEEEEEETTCTTHHHHHHHHHHHS--------------CSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cccccccccEEEEEcCCcCCHHHHHHHHHHHc--------------CCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999876311111110000000 011111 123455566667666766678888888
Q ss_pred HHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHH
Q psy852 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDL 748 (891)
Q Consensus 670 A~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edI 748 (891)
++++.+. +++++.+.....++|.+.+. ...++.+.|.++|+... ..+...+ ++++..+|++|+
T Consensus 277 ~~~l~~~-----g~~~~~~~~~~~l~i~~~~~-------~~~~l~~~L~~~GI~v~----~~g~~~iRi~~~~~~t~e~i 340 (446)
T 2x3l_A 277 IECLENK-----GFEMLQVDDPLKLLIKYEGF-------TGHDIQNWFMNAHIYLE----LADDYQALAILPLWHHDDTY 340 (446)
T ss_dssp HHHHHHH-----TCEEEECSSTTEEEEECTTS-------CHHHHHHHHHHTTEEES----EECSSCEEEECCCCCTTCCC
T ss_pred HHHHHHc-----CCEECcCCCCeEEEEEeCCc-------CHHHHHHHHHHCCCEEE----ecCCCEEEEEeecCCCHHHH
Confidence 8888887 67777544334677887532 34578888888887742 1133456 999888899999
Q ss_pred HHHHHHHHHHHH
Q psy852 749 AYKRSFFVRMLG 760 (891)
Q Consensus 749 d~li~~L~ei~~ 760 (891)
+++++|+++..
T Consensus 341 -~l~~aL~~~~~ 351 (446)
T 2x3l_A 341 -LFDSLLRKIED 351 (446)
T ss_dssp -CHHHHHHHHHT
T ss_pred -HHHHHHHHHHH
Confidence 99999998763
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.6e-08 Score=108.44 Aligned_cols=139 Identities=10% Similarity=0.032 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC
Q psy852 53 PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP 132 (891)
Q Consensus 53 p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~ 132 (891)
+...+++..+.+++.+..|.+.... +.+ .+++||+......+..+ . .
T Consensus 75 ~g~~~l~~~ia~~~~~~~g~~~~~~------------~~v--------------~~t~g~~~a~~~~~~~~-~-~----- 121 (412)
T 2x5d_A 75 RGIPRLRRAISHWYRDRYDVQIDPE------------SEA--------------IVTIGSKEGLAHLMLAT-L-D----- 121 (412)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTT------------TSE--------------EEESCHHHHHHHHHHHH-C-C-----
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCC------------cCE--------------EEcCChHHHHHHHHHHh-C-C-----
Confidence 4467888999999988888742200 001 13567764332222222 1 1
Q ss_pred ccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC-C-cccHHHHHHHHHhhhhcCCcceEEEeecccCcccc
Q psy852 133 FVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-N-SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS 210 (891)
Q Consensus 133 ~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g-~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga 210 (891)
+...|++..-+|.+....+...+.+++.++.+++ | .+|+++|++++++. +.+|+++..+|.+|.
T Consensus 122 --------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~l~~p~nptG~ 187 (412)
T 2x5d_A 122 --------HGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPK------PRMMILGFPSNPTAQ 187 (412)
T ss_dssp --------TTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESC------CSEEEEESSCTTTCC
T ss_pred --------CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccC------ceEEEECCCCCCCCC
Confidence 1124777788999999888777789999999875 3 48999999887632 335556777899999
Q ss_pred ccC---HHHHHHHHHHcCCceeeeccccCCc
Q psy852 211 FDN---LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 211 vDp---l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+-| +++|+++|+++|+++++|.+|+++.
T Consensus 188 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~ 218 (412)
T 2x5d_A 188 CVELDFFERVVALAKQYDVMVVHDLAYADIV 218 (412)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 866 6889999999999999999996543
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-08 Score=112.44 Aligned_cols=137 Identities=9% Similarity=0.026 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC-CccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC
Q psy852 54 SCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPN-DIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP 132 (891)
Q Consensus 54 ~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~-~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~ 132 (891)
...++++.+.+++.+.+|.+... + .+ .+++||+.. +...+.....
T Consensus 78 g~~~l~~~la~~l~~~~g~~~~~-------------~~~v--------------~~~~g~~~a-~~~~~~~~~~------ 123 (429)
T 1yiz_A 78 GHPRLVQALSKLYSQLVDRTINP-------------MTEV--------------LVTVGAYEA-LYATIQGHVD------ 123 (429)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCT-------------TTSE--------------EEESHHHHH-HHHHHHHHCC------
T ss_pred CcHHHHHHHHHHHHHHhCCCCCC-------------cCCE--------------EEecChHHH-HHHHHHHhcC------
Confidence 35789999999999988865321 0 01 135676543 3222222211
Q ss_pred ccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC----------CCcccHHHHHHHHHhhhhcCCcceEEEee
Q psy852 133 FVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD----------KNSLRGATLRQVMQQDETMGYIPFFVSTT 202 (891)
Q Consensus 133 ~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~----------~g~id~~~L~~~l~~~~~~g~~p~~V~~t 202 (891)
+...|++..-+|++...++...|.+++.++.+. ++.+|+++|++.+++. +.+|+++
T Consensus 124 --------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~ 189 (429)
T 1yiz_A 124 --------EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------TKMIIIN 189 (429)
T ss_dssp --------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT------EEEEEEE
T ss_pred --------CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccC------ceEEEEC
Confidence 112367777788888888877788999999876 3579999999988643 3466667
Q ss_pred cccCccccccC---HHHHHHHHHHcCCceeeeccccCCc
Q psy852 203 LGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 203 ~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
..+|.+|.+-| +++|+++|+++|+++++|.+|+++.
T Consensus 190 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 228 (429)
T 1yiz_A 190 TPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMV 228 (429)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccc
Confidence 88999999975 9999999999999999999997644
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.2e-08 Score=105.83 Aligned_cols=254 Identities=8% Similarity=-0.029 Sum_probs=161.8
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+...+. +++ +++|+++++..++.+... +.-.|+++...|.+...++...
T Consensus 55 ~l~~~la~~~~~~~~-~i~--~~~g~~~a~~~~~~~l~~-------------------~gd~vl~~~~~~~~~~~~~~~~ 112 (354)
T 3ly1_A 55 MLGNKLAAHHQVEAP-SIL--LTAGSSEGIRAAIEAYAS-------------------LEAQLVIPELTYGDGEHFAKIA 112 (354)
T ss_dssp HHHHHHHHHTTSCGG-GEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEESSSCTHHHHHHHHT
T ss_pred HHHHHHHHHhCCChH-HEE--EeCChHHHHHHHHHHHhC-------------------CCCeEEECCCCchHHHHHHHHc
Confidence 444555566653333 566 678999999888765411 1124778888899999999889
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hh--hh-----hcCC---------
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CY--RK-----SQGI--------- 579 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~--~~-----ldGi--------- 579 (891)
|.+++.+|.++++.+|+++|+++|++.. +...++++. ..|+.. |. ++ +|.+
T Consensus 113 g~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~ 190 (354)
T 3ly1_A 113 GMKVTKVKMLDNWAFDIEGLKAAVAAYS--GPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPR 190 (354)
T ss_dssp TCEEEEECCCTTSCCCHHHHHHHHHTCS--SCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTT
T ss_pred CCEEEEecCCCCCCCCHHHHHHHhccCC--CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccc
Confidence 9999999999899999999999998410 112233322 234443 11 11 1211
Q ss_pred -----------CCccEEEEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHH
Q psy852 580 -----------EYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647 (891)
Q Consensus 580 -----------~~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l 647 (891)
...+-+..++||+++ ....+|+++..+ . +.+.+.....+ ++ ...+.+
T Consensus 191 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~-~~~~~~~~~~~-------------~~------~~~~~~ 249 (354)
T 3ly1_A 191 FRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHP-T-VIALMGRYVAG-------------EK------INFSGV 249 (354)
T ss_dssp CCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCH-H-HHHHHGGGTTC-------------SC------CCHHHH
T ss_pred cCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCH-H-HHHHHHHhcCC-------------CC------CCHHHH
Confidence 023477789999997 556788888743 2 22222110000 11 112233
Q ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe
Q psy852 648 WFVIRTYG-LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV 726 (891)
Q Consensus 648 W~~L~~lG-~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s 726 (891)
++....+. .+.+.+..++..++++++.+.|++. ++++. ++..+.+++++.. ....+.+.|.+.|+.+.
T Consensus 250 ~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~- 318 (354)
T 3ly1_A 250 DAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQLVV--------PLKDYQTHMADAGVLIG- 318 (354)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECSS--------CHHHHHHHHHHTTEECC-
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECCC--------CHHHHHHHHHHCCEEEe-
Confidence 33333332 2557777888889999999999886 66665 4455677888753 35678888888998754
Q ss_pred eccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 727 PASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 727 ~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+........+ ++++ +++|+++++++|+++.
T Consensus 319 g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 349 (354)
T 3ly1_A 319 RAFPPADNWCRISLG---TPQEMQWVADTMREFR 349 (354)
T ss_dssp CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 3333345566 8865 7999999999999876
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.1e-09 Score=114.62 Aligned_cols=267 Identities=8% Similarity=0.033 Sum_probs=159.8
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+... +++ +++|||+++..++.+++. .+.-.|+++...|.+...++...
T Consensus 39 ~l~~~la~~~~~~---~~~--~~~sGt~al~~al~~~~~------------------~~gd~Vi~~~~~~~~~~~~~~~~ 95 (367)
T 3nyt_A 39 ELEDRLADFVGAK---YCI--SCANGTDALQIVQMALGV------------------GPGDEVITPGFTYVATAETVALL 95 (367)
T ss_dssp HHHHHHHHHHTCS---EEE--EESCHHHHHHHHHHHTTC------------------CTTCEEEEESSSCTHHHHHHHHT
T ss_pred HHHHHHHHHhCCC---cEE--EeCCHHHHHHHHHHHhCC------------------CCcCEEEECCCccHHHHHHHHHc
Confidence 3444555555542 344 678999999988877531 12235888999999999999989
Q ss_pred CceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcCC-------------
Q psy852 527 FVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQGI------------- 579 (891)
Q Consensus 527 gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldGi------------- 579 (891)
|.+++.+|++++ +.+|+++|+++|+++++ .+++++..|+.. |.++ +|.+
T Consensus 96 G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~----~v~~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~ 171 (367)
T 3nyt_A 96 GAKPVYVDIDPRTYNLDPQLLEAAITPRTK----AIIPVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSC 171 (367)
T ss_dssp TCEEEEECBCTTTCSBCGGGTGGGCCTTEE----EECCBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETT
T ss_pred CCEEEEEecCCccCCcCHHHHHHhcCcCCc----EEEeeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeecc
Confidence 999999999876 89999999999865322 233445566554 4331 2221
Q ss_pred CCccEEEEc--CcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 580 EYADSFNVN--VNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 580 ~~aDSIs~d--~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
...|.++++ +||+++.+-..|+++.+++......-........ ..+... .+...-+...+..+..+. ..+
T Consensus 172 ~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~----~~~~~~--~~g~~~~~~~~~aa~~~~--~l~ 243 (367)
T 3nyt_A 172 NLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQD----RRYHHI--RVGVNSRLDTLQAAILLP--KLE 243 (367)
T ss_dssp SSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEE----ETTEEC--SCCCBCCCCHHHHHHHHH--HHH
T ss_pred CCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCC----cCceee--ccCcCCCccHHHHHHHHH--HHH
Confidence 111666766 6999986444666666555432221111100000 000000 011111233344444433 345
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-----eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc---
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-----LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS--- 729 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~--- 729 (891)
.+++..++..++++++.+.|++.+ +++...+. ..++.+++. ..+.+.+.|.++|+.......
T Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~GI~~~~~~~~~~ 313 (367)
T 3nyt_A 244 IFEEEIALRQKVAAEYDLSLKQVG-IGTPFIEVNNISVYAQYTVRMD---------NRESVQASLKAAGVPTAVHYPIPL 313 (367)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTEECCCSSEEEECS---------SHHHHHHHHHHHTCCCBCSCSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC-eeccCCCCCCceeeEEEEEEeC---------CHHHHHHHHHHCCCceeccCCCcc
Confidence 667888888999999999999873 55432221 123344432 245788889888986332210
Q ss_pred -----cc------------CCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 730 -----QE------------QNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 730 -----~~------------g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.. ....+ +++++.+|++|||++++.|++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 314 NKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp GGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 00 12356 7789999999999999998753
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-07 Score=104.44 Aligned_cols=259 Identities=9% Similarity=0.026 Sum_probs=158.6
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+.. + +.+ +.++|++++..++.+... +.-.|+++...|.+...++...
T Consensus 94 ~l~~~la~~~g~-~--~~i--~~~sGs~a~~~~~~~~~~-------------------~gd~v~~~~~~~~~~~~~~~~~ 149 (401)
T 1fc4_A 94 ELEQKLAAFLGM-E--DAI--LYSSCFDANGGLFETLLG-------------------AEDAIISDALNHASIIDGVRLC 149 (401)
T ss_dssp HHHHHHHHHHTC-S--EEE--EESCHHHHHHTTHHHHCC-------------------TTCEEEEETTCCHHHHHHHHTS
T ss_pred HHHHHHHHHhCC-C--cEE--EeCChHHHHHHHHHHHcC-------------------CCCEEEEcchhHHHHHHHHHHc
Confidence 344455555543 3 222 345668888877665310 1225788888999998888888
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcC--CccEEEE---ecCCccc--------hhhh--------------h--c
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMG--YIPFFVS---TTLGTTS--------CYRK--------------S--Q 577 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g--~ip~~Vv---ataGTT~--------c~~~--------------l--d 577 (891)
|.+++.+|. +|+++|+++|++....+ ...+++. +..|+.. |.++ . +
T Consensus 150 g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~ 224 (401)
T 1fc4_A 150 KAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGEN 224 (401)
T ss_dssp CSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTT
T ss_pred CCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCC
Confidence 889888873 58999999998643221 1122222 2245543 3321 1 0
Q ss_pred --------CC-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHH
Q psy852 578 --------GI-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLW 648 (891)
Q Consensus 578 --------Gi-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW 648 (891)
++ ..+|.+..++||+++++.| |+++.++ +.+.........|.. + . ....+.++
T Consensus 225 g~~~~~~~~~~~~~di~~~s~sK~~~~~~g-G~~~~~~-~~~~~l~~~~~~~~~------------~--~--~~~~~~~~ 286 (401)
T 1fc4_A 225 GRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAARK-EVVEWLRQRSRPYLF------------S--N--SLAPAIVA 286 (401)
T ss_dssp SCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEECH-HHHHHHHHHCHHHHH------------S--C--CCCHHHHH
T ss_pred CCccHHHcCCCcCCcEEEecchhhccCCCC-EEEEcCH-HHHHHHHHhCcCcee------------C--C--CCCHHHHH
Confidence 11 2358999999999966666 8888753 322221111111100 0 0 11122333
Q ss_pred HHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee
Q psy852 649 FVIRTYGL-SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 649 ~~L~~lG~-~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~ 727 (891)
..+..+.. ....+..++..++++++.+.|++. ++++. +...++++|++.+ .....++.+.|.++|+.+..+
T Consensus 287 a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~------~~~~~~l~~~l~~~gi~v~~~ 358 (401)
T 1fc4_A 287 ASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD------AVVAQKFARELQKEGIYVTGF 358 (401)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC------HHHHHHHHHHHHHTTEECCEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCC------hHHHHHHHHHHHHCCcEEeee
Confidence 33333322 114677788889999999999887 67766 4567788888853 234567888998899874433
Q ss_pred ccc---cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 728 ASQ---EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 728 s~~---~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
... .+...+ ++++..+|++|++++++.|++++.
T Consensus 359 ~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 395 (401)
T 1fc4_A 359 FYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK 395 (401)
T ss_dssp CTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 321 134567 999988999999999999998763
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6e-08 Score=107.12 Aligned_cols=261 Identities=10% Similarity=0.037 Sum_probs=162.5
Q ss_pred HHHHHHHHhhc--cCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 447 ELAKLFEGKVR--RDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~--~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
++++++.+.+. ..+. +++ +++|+++++..++.+... +.-.|++...+|.+...++.
T Consensus 75 ~l~~~l~~~~g~~~~~~-~v~--~~~g~~~a~~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~ 132 (391)
T 4dq6_A 75 SIVNWLYRRHNWKIKSE-WLI--YSPGVIPAISLLINELTK-------------------ANDKIMIQEPVYSPFNSVVK 132 (391)
T ss_dssp HHHHHHHHHHCCCCCGG-GEE--EESCHHHHHHHHHHHHSC-------------------TTCEEEECSSCCTHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHH-HeE--EcCChHHHHHHHHHHhCC-------------------CCCEEEEcCCCCHHHHHHHH
Confidence 34455555544 2222 556 788999999888776421 12257888899999999998
Q ss_pred HcCceEEEecCC--CC--CCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hcCC--
Q psy852 525 MAFVRLKILEPD--DK--NSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQGI-- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d--~~--G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ldGi-- 579 (891)
..|.+++.+|.+ ++ +.+|+++|+++|++ ++ .++++. ..|++. |.++ +|.+
T Consensus 133 ~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~----~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~ 207 (391)
T 4dq6_A 133 NNNRELIISPLQKLENGNYIMDYEDIENKIKD-VK----LFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHS 207 (391)
T ss_dssp HTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EE----EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CC----EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeecccc
Confidence 899999999987 33 46999999999976 21 222222 245542 3331 1211
Q ss_pred ------------CCc--c-----EEEEcCcccCC-cccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccc
Q psy852 580 ------------EYA--D-----SFNVNVNKWLL-TAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPL 638 (891)
Q Consensus 580 ------------~~a--D-----SIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~ 638 (891)
... | -+..+.||+++ ....+|+++.+++.... .+. ....+ +..
T Consensus 208 ~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~-~~~~~~~~~--------------~~~- 271 (391)
T 4dq6_A 208 DIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYK-LLDDAFTRI--------------DIK- 271 (391)
T ss_dssp TCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHH-HHHHHHHHT--------------TCC-
T ss_pred ccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHH-HHHHHHHhh--------------cCC-
Confidence 011 2 56779999997 44678888887643222 111 00000 000
Q ss_pred cccccchHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHH
Q psy852 639 SRRFRSLKLWFVIRTY--GLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLE 715 (891)
Q Consensus 639 SRr~~aL~lW~~L~~l--G~~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~ 715 (891)
....+.+++....+ +.+.+++..++..++++++.+.|++ .+++++..+....+++++++.. +.....+.+
T Consensus 272 --~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 344 (391)
T 4dq6_A 272 --RNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSAL-----GLSDEELES 344 (391)
T ss_dssp --CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGG-----CCCHHHHHH
T ss_pred --CCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhc-----CCCHHHHHH
Confidence 01112222222222 2344777788888999999999988 7899887654444555777531 124568889
Q ss_pred HHHhC-CcEEEeecccc--CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 716 DINAS-GRLHMVPASQE--QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 716 ~L~~~-G~~~~s~s~~~--g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.|.++ |+.+..+.... +...+ ++++ +++++|+++++.|++++
T Consensus 345 ~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 345 ILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp HHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 99888 98755544332 34566 8877 68999999999998764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-08 Score=110.63 Aligned_cols=247 Identities=11% Similarity=-0.005 Sum_probs=153.6
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH---HHHHHHcCc--eEEEecCC-CCCCcCH
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV---EKAAMMAFV--RLKILEPD-DKNSLRG 543 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv---~Kaa~l~gv--~v~~Vp~d-~~G~mD~ 543 (891)
++|++++..++.++.. +.-.|+++..+|.+. ..++...|. ..+.++++ .++.+|+
T Consensus 92 ~sGt~a~~~~~~~~~~-------------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 152 (407)
T 2dkj_A 92 HSGSQANMAVYMALME-------------------PGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDL 152 (407)
T ss_dssp SSHHHHHHHHHHHHCC-------------------TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCH
T ss_pred cchHHHHHHHHHHhcC-------------------CCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCH
Confidence 4457788888776511 112477777888776 344444444 44455545 3789999
Q ss_pred HHHHHHHHhhhhcCCccEEE-EecCCccc--------hhhh-----h----------cC-----CCCccEEEEcCcccCC
Q psy852 544 ATLRQVMQQDETMGYIPFFV-STTLGTTS--------CYRK-----S----------QG-----IEYADSFNVNVNKWLL 594 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~V-vataGTT~--------c~~~-----l----------dG-----i~~aDSIs~d~HK~L~ 594 (891)
++|+++|++. +...+++ ....|+.. |.++ + .| ++.+|.+..++||++.
T Consensus 153 ~~l~~~l~~~---~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~ 229 (407)
T 2dkj_A 153 EEVRRLALEH---RPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLR 229 (407)
T ss_dssp HHHHHHHHHH---CCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGC
T ss_pred HHHHHHHhhc---CCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCC
Confidence 9999999852 1122333 22335332 4331 1 12 2357999999999998
Q ss_pred cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy852 595 TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673 (891)
Q Consensus 595 ~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L 673 (891)
+|.+ |+++.++++...........|. . ++-. .....+..+++.+...++.+..++..++++++
T Consensus 230 g~~~-G~~~~~~~~~~~~l~~~~~~~~--------------~-~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 293 (407)
T 2dkj_A 230 GPRG-GLILSNDPELGKRIDKLIFPGI--------------Q-GGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRL 293 (407)
T ss_dssp CCSC-EEEEESCHHHHHHHHHHHTTTT--------------C-SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred CCCc-eEEEECCHHHHHHHHhhhcccc--------------c-CCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8886 9988875433221111111110 0 0111 11223445566555578889999999999999
Q ss_pred HHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc------ccCCeEE-EEecC----
Q psy852 674 EGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS------QEQNDEV-FELQE---- 741 (891)
Q Consensus 674 ~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~------~~g~~~l-~sv~~---- 741 (891)
.+.|++. +++++.+ ...+++++++.+. +.....+.+.|.+.|+....+.. ......+ ++++.
T Consensus 294 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~ 367 (407)
T 2dkj_A 294 AEELARR-GYRIVTGGTDNHLFLVDLRPK-----GLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTR 367 (407)
T ss_dssp HHHHHHT-TCEEGGGSCSSSEEEEECGGG-----TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHT
T ss_pred HHHHHhC-CceeecCCCCceEEEEECccc-----CCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeeccccccc
Confidence 9999987 7888763 4667888888532 11356788889889987554331 1123456 88765
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 742 ~tT~edId~li~~L~ei~~ 760 (891)
.+|++|++++++.|+++..
T Consensus 368 ~~~~~~i~~~~~~l~~~~~ 386 (407)
T 2dkj_A 368 GFTPEEMPLVAELIDRALL 386 (407)
T ss_dssp TCCGGGHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 3799999999999998763
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.5e-08 Score=110.65 Aligned_cols=243 Identities=12% Similarity=-0.027 Sum_probs=155.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+++ +++|+++++..++.+... +.-.|+++..+|.+...++...|.+++.+|.++ +..
T Consensus 104 ~v~--~~~g~t~a~~~~~~~~~~-------------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 162 (409)
T 2gb3_A 104 NVL--VTNGGSEAILFSFAVIAN-------------------PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFA 162 (409)
T ss_dssp GEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSC
T ss_pred HEE--EeCCHHHHHHHHHHHhCC-------------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCc
Confidence 455 778999999988876411 123588888899999999888899999999875 344
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh----------------------hcCCCCccE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK----------------------SQGIEYADS 584 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~----------------------ldGi~~aDS 584 (891)
+ +++|+++|++.+ ..++++. ..|... |.++ ++++...|.
T Consensus 163 ~-~~~l~~~l~~~~----~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i 237 (409)
T 2gb3_A 163 I-PQNLESFINERT----KGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVV 237 (409)
T ss_dssp C-CTTGGGGCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEE
T ss_pred c-HHHHHHhhCcCC----eEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEE
Confidence 5 888888876521 1223322 245542 3321 122334688
Q ss_pred EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhHHH
Q psy852 585 FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGLQK 661 (891)
Q Consensus 585 Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~~~ 661 (891)
+..++||+++.| ..+|+++.++++.+ +.+.....+ ++ ....+.+++....+ +...+++
T Consensus 238 ~~~s~sK~~g~~G~r~G~~~~~~~~l~-~~l~~~~~~-------------~~-----~~~~~~~~a~~~~l~~~~~~~~~ 298 (409)
T 2gb3_A 238 VIDSVSKKFSACGARVGCLITRNEELI-SHAMKLAQG-------------RL-----APPLLEQIGSVGLLNLDDSFFDF 298 (409)
T ss_dssp EEEESTTTTTCGGGCCEEEECSCHHHH-HHHHHHHHH-------------SC-----CCCHHHHHHHHHHHTCCHHHHHH
T ss_pred EEecchhccCCccceEEEEEECcHHHH-HHHHHHHhc-------------cC-----CCCHHHHHHHHHHHhccHHHHHH
Confidence 899999999754 35899988763322 222110000 00 11123333444444 4566788
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEE-eCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhC------CcEEEeeccc----
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEI-SNDVRLGLVCFRLRSENNLIADQNNRKLLEDINAS------GRLHMVPASQ---- 730 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~ei-l~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~------G~~~~s~s~~---- 730 (891)
..++..++++++.+.|++. ++++ ..+.....+.+++.+. ...++.+.|.++ |+.+..+...
T Consensus 299 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~ 370 (409)
T 2gb3_A 299 VRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELPVE-------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTP 370 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECSSS-------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSST
T ss_pred HHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeCCC-------CHHHHHHHHHhccccccCcEEEeCchHhCCCC
Confidence 8888899999999999887 7777 4433334555566422 356788888876 8775544332
Q ss_pred -cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 -EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 -~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+...+ ++++ +++++|+++++.|++.+.
T Consensus 371 ~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~ 400 (409)
T 2gb3_A 371 GLGKKEIRIACV--LEKDLLSRAIDVLMEGLK 400 (409)
T ss_dssp TTTSSEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeC--CCHHHHHHHHHHHHHHHH
Confidence 234566 8877 799999999999998874
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-07 Score=102.86 Aligned_cols=250 Identities=10% Similarity=0.001 Sum_probs=163.0
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+...+. +++ +++|+++++..++.++ . .|+++.-+|.+...++...|
T Consensus 66 l~~~la~~~~~~~~-~i~--~~~g~t~al~~~~~~~-------d----------------~vi~~~~~~~~~~~~~~~~g 119 (361)
T 3ftb_A 66 LNKSIENYLKLKDI-GIV--LGNGASEIIELSISLF-------E----------------KILIIVPSYAEYEINAKKHG 119 (361)
T ss_dssp HHHHHHHHHTCCSC-EEE--EESSHHHHHHHHHTTC-------S----------------EEEEEESCCTHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcc-eEE--EcCCHHHHHHHHHHHc-------C----------------cEEEecCChHHHHHHHHHcC
Confidence 33444555543333 555 6889999998887665 1 37777888999999988889
Q ss_pred ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC---------
Q psy852 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI--------- 579 (891)
Q Consensus 528 v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi--------- 579 (891)
.+++.+|.++++.+++++|++++++ + ..++++ +..|+.. |.++ +|.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~l~~-~----~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~ 194 (361)
T 3ftb_A 120 VSVVFSYLDENMCIDYEDIISKIDD-V----DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPS 194 (361)
T ss_dssp CEEEEEECCTTSCCCHHHHHHHTTT-C----SEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTT
T ss_pred CeEEEeecCcccCCCHHHHHHhccC-C----CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcc
Confidence 9999999999999999999999875 2 122332 2245543 3331 1211
Q ss_pred ---------CCccEEEEcCcccCCc-ccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHH
Q psy852 580 ---------EYADSFNVNVNKWLLT-AFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWF 649 (891)
Q Consensus 580 ---------~~aDSIs~d~HK~L~~-P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~ 649 (891)
...+-+..+.||.++. ...+|++++.+++........... ++ ...+.+++
T Consensus 195 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~--------------~~------~~~~~~~~ 254 (361)
T 3ftb_A 195 SSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNP--------------WN------INCFAEMA 254 (361)
T ss_dssp SSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCT--------------TC------SCHHHHHH
T ss_pred cchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCC--------------CC------CCHHHHHH
Confidence 1112446689999974 467888876665433221111111 11 11222333
Q ss_pred HHHHHH-HhhHHHHHHHHHHHHHHHHHHhccCCCcE-EeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee
Q psy852 650 VIRTYG-LSGLQKYIRRHCELAKLFEGKVRRDPRFE-ISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 650 ~L~~lG-~~G~~~~i~~~~~lA~~L~~~L~~~~~~e-il~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~ 727 (891)
....+. .+.+.+..++..++++++.+.|++.++++ +. ++..+.+.|++.+. ...++.+.|.++|+.+..+
T Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~l~~~l~~~gi~v~~g 326 (361)
T 3ftb_A 255 AINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENI-------SGEKLYDSLLKEDIVIRRC 326 (361)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSS-------CHHHHHHHHHTTTEECEEC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCC-------CHHHHHHHHHHCCeEEeeC
Confidence 333332 35677788888999999999999998988 55 45566788888642 3567889999899875554
Q ss_pred ccc--cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 728 ASQ--EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 728 s~~--~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
... .+...+ ++++ +.+++|+++++|+++.
T Consensus 327 ~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 327 CNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVE 358 (361)
T ss_dssp TTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 433 234566 8876 8899999999998876
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-08 Score=112.29 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=67.0
Q ss_pred EEEecCCCChHHHHHHH-H----cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM-M----AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~----~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~ 218 (891)
.|+++...|.+....+. + .+.+++.++.+ |+++|++++++. +.+|++...+|.+|.+.|+++|+
T Consensus 107 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~e~~~np~G~~~~l~~i~ 175 (400)
T 3nmy_A 107 HVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT-----DPAAFKAAIRAD------TKMVWIETPTNPMLKLVDIAAIA 175 (400)
T ss_dssp EEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT-----SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHH
T ss_pred EEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC-----CHHHHHHHhccC------CCEEEEECCCCCCCeeecHHHHH
Confidence 47788888987766652 2 47788888875 899999988754 35777888999999999999999
Q ss_pred HHHHHcCCceeeecccc
Q psy852 219 PVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~G 235 (891)
++|+++|+++++|.+|+
T Consensus 176 ~la~~~g~~livDe~~~ 192 (400)
T 3nmy_A 176 VIARKHGLLTVVDNTFA 192 (400)
T ss_dssp HHHHHTTCEEEEECTTT
T ss_pred HHHHHcCCEEEEECCCc
Confidence 99999999999999883
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.3e-08 Score=110.60 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=69.8
Q ss_pred EEEecC-CCChHHHHH----------HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeec----ccCcc
Q psy852 144 MAYCSK-EAHSCVEKA----------AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL----GTTSC 208 (891)
Q Consensus 144 ~v~~S~-~~H~Sv~ka----------a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~----Gtt~~ 208 (891)
.|+++. ..|...... +...+.+++.++++++|.+|+++|++++++. +.+|+++. .+|.+
T Consensus 103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~------tklV~i~~s~g~p~npt 176 (409)
T 3jzl_A 103 ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPK------TKMIGIQRSRGYADRPS 176 (409)
T ss_dssp EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTT------EEEEEEECSCTTSSSCC
T ss_pred EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCC------CeEEEEECCCCCCCCCc
Confidence 366665 667666543 2335779999999999999999999998754 35777777 88999
Q ss_pred ccccCHHHHHHHHHH--cCCceeeecccc
Q psy852 209 CSFDNLAEIGPVAKE--FDVWLHVDGAYA 235 (891)
Q Consensus 209 GavDpl~~I~~i~~~--~~~~lHvDaA~G 235 (891)
|.+.|+++|+++|++ +|+++|+|.|||
T Consensus 177 g~v~~l~~I~~la~~~~~~~~livD~a~~ 205 (409)
T 3jzl_A 177 FTIEKIKEMIVFVKNINPEVIVFVDNCYG 205 (409)
T ss_dssp CCHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred CccccHHHHHHHHHhhCCCCEEEEeCCcc
Confidence 999999999999999 898888998884
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-07 Score=103.76 Aligned_cols=239 Identities=10% Similarity=0.063 Sum_probs=149.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQ 548 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~ 548 (891)
.++|++++..++.+.. + +.-.|+++...|.+...++...|.+++.+|. +|+++|++
T Consensus 105 ~~sGt~a~~~~~~~~~----~---------------~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~ 160 (384)
T 1bs0_A 105 FISGFAANQAVIAAMM----A---------------KEDRIAADRLSHASLLEAASLSPSQLRRFAH-----NDVTHLAR 160 (384)
T ss_dssp ESCHHHHHHHHHHHHC----C---------------TTCEEEEETTCCHHHHHHHHTSSSEEEEECT-----TCHHHHHH
T ss_pred eCCcHHHHHHHHHHhC----C---------------CCcEEEEcccccHHHHHHHHHcCCCEEEeCC-----CCHHHHHH
Confidence 4456899888775531 0 1225788889999999999888999998884 58999999
Q ss_pred HHHhhhhcCCccEEEEe-c---CCccc--------hhhh----------hcCC-------------CCccEEEEcCcccC
Q psy852 549 VMQQDETMGYIPFFVST-T---LGTTS--------CYRK----------SQGI-------------EYADSFNVNVNKWL 593 (891)
Q Consensus 549 aI~~d~~~g~ip~~Vva-t---aGTT~--------c~~~----------ldGi-------------~~aDSIs~d~HK~L 593 (891)
+|++... . ..++++. . .|+.. |.++ ..|. ...|.+..++||++
T Consensus 161 ~l~~~~~-~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~ 238 (384)
T 1bs0_A 161 LLASPCP-G-QQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF 238 (384)
T ss_dssp HHHSCCS-S-CEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT
T ss_pred HHHhcCC-C-CeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh
Confidence 9986421 1 2233332 2 46554 4331 1111 23688889999999
Q ss_pred CcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy852 594 LTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672 (891)
Q Consensus 594 ~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~ 672 (891)
+ |.| |+++.++ +.+ +.+.. ...|.. +.. .-......+..+++.+....+++..++..+++++
T Consensus 239 ~-~~G-G~~~~~~-~~~-~~l~~~~~~~~~------------~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 301 (384)
T 1bs0_A 239 G-VSG-AAVLCSS-TVA-DYLLQFARHLIY------------STS-MPPAQAQALRASLAVIRSDEGDARREKLAALITR 301 (384)
T ss_dssp S-SCC-EEEEECH-HHH-HHHHHHCHHHHS------------SBC-CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred h-ccC-cEEEeCH-HHH-HHHHHhchhhhc------------CCC-CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 8 555 8887753 222 22211 111110 000 0011112223344433221456778888999999
Q ss_pred HHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc---cCCeEE-EEecCCCCHHHH
Q psy852 673 FEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ---EQNDEV-FELQERKRKDDL 748 (891)
Q Consensus 673 L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~---~g~~~l-~sv~~~tT~edI 748 (891)
+.+.|++. ++++. ++..++++|++.. .....++.+.|.++|+.+..+... .+...+ ++++..+|++|+
T Consensus 302 l~~~L~~~-g~~~~-~~~~~~~~~~~~~------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i 373 (384)
T 1bs0_A 302 FRAGVQDL-PFTLA-DSCSAIQPLIVGD------NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDI 373 (384)
T ss_dssp HHHHHTTS-SCEEC-SCCSSBCCEEEES------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHH
T ss_pred HHHHHHhc-CCccc-CCCCCEEEEEeCC------HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHH
Confidence 99999987 67776 3455677777742 224567888998889874433221 234667 999888899999
Q ss_pred HHHHHHHHHH
Q psy852 749 AYKRSFFVRM 758 (891)
Q Consensus 749 d~li~~L~ei 758 (891)
+++++.|+++
T Consensus 374 ~~~~~~l~~~ 383 (384)
T 1bs0_A 374 DRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999864
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-08 Score=107.29 Aligned_cols=86 Identities=12% Similarity=-0.013 Sum_probs=73.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEec-CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEP-DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~-d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++.-+|.++...+...+.+++.+++ ++++ +|+++|++.+++. +.+|+++..+|.+|.+-|++++.++++
T Consensus 108 ~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~ 180 (365)
T 3get_A 108 AFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDE------IKLIFLCLPNNPLGECLDASEATEFIK 180 (365)
T ss_dssp EEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTT------EEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCC------CCEEEEcCCCCCCCCCcCHHHHHHHHH
Confidence 3778888999999888777889999998 6788 9999999998743 357777889999999999999999998
Q ss_pred --HcCCceeeeccccC
Q psy852 223 --EFDVWLHVDGAYAG 236 (891)
Q Consensus 223 --~~~~~lHvDaA~GG 236 (891)
++|+++++|.+|++
T Consensus 181 ~~~~~~~li~De~~~~ 196 (365)
T 3get_A 181 GVNEDCLVVIDAAYNE 196 (365)
T ss_dssp TSCTTSEEEEECTTHH
T ss_pred hCCCCcEEEEeCccHH
Confidence 67999999999854
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4e-08 Score=108.78 Aligned_cols=254 Identities=11% Similarity=0.068 Sum_probs=159.7
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++.+...++ +++ +++|+++++..++.++.. +.-.|+++..+|.+...++...|.++
T Consensus 69 ~la~~~~~~~~-~v~--~~~g~~~a~~~~~~~~~~-------------------~gd~Vl~~~~~~~~~~~~~~~~g~~~ 126 (381)
T 1v2d_A 69 ALAEEFAVEPE-SVV--VTSGATEALYVLLQSLVG-------------------PGDEVVVLEPFFDVYLPDAFLAGAKA 126 (381)
T ss_dssp HHHHHHTSCGG-GEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHHHHTTCEE
T ss_pred HHHHhcCCChh-hEE--EcCChHHHHHHHHHHhCC-------------------CCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 34444544333 455 788999999988876521 12257888889999988888889999
Q ss_pred EEecCC---CCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc--------C--
Q psy852 531 KILEPD---DKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ--------G-- 578 (891)
Q Consensus 531 ~~Vp~d---~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld--------G-- 578 (891)
+.+|.+ +++.+|+++|++++++.+ ..++++. ..|+.. |.++ +| |
T Consensus 127 ~~v~~~~~~~~~~~d~~~l~~~l~~~~----~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~ 202 (381)
T 1v2d_A 127 RLVRLDLTPEGFRLDLSALEKALTPRT----RALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER 202 (381)
T ss_dssp EEEECEEETTEEECCHHHHHTTCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC
T ss_pred EEEeCCCCCccCCcCHHHHHHhcCcCC----EEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC
Confidence 999987 568899999999886421 1222222 245542 3331 11 1
Q ss_pred -------CCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHH
Q psy852 579 -------IEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV 650 (891)
Q Consensus 579 -------i~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~ 650 (891)
....|.+..++||+++.| ..+|+++++++ .+ +.+.....+ ..++. + ......+..+
T Consensus 203 ~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~-~~-~~~~~~~~~-----------~~~~~--~-~~~~~a~~~~ 266 (381)
T 1v2d_A 203 PRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKE-FM-PRLAGMRQW-----------TSFSA--P-TPLQAGVAEA 266 (381)
T ss_dssp CCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTT-TH-HHHHHHHHH-----------HTSSC--C-HHHHHHHHHH
T ss_pred CCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHH-HH-HHHHHHHhh-----------cccCC--C-cHHHHHHHHH
Confidence 124789999999998755 34899988543 22 222110000 01111 0 0111112223
Q ss_pred HHHHH-HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 651 IRTYG-LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 651 L~~lG-~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
|+... .+.+++..++..+++++|.+.|++. ++++..+.....+++++.+. + +...|.+.|+.+..+..
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-----~-----~~~~l~~~gi~v~~g~~ 335 (381)
T 1v2d_A 267 LKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW-----D-----AFRLVEEARVALIPASA 335 (381)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC-----C-----HHHHHHHTCEECEEGGG
T ss_pred HhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecChH-----h-----HHHHHHhCCEEEecchH
Confidence 33221 4567788888899999999999884 78887654455777777532 1 55667788988655443
Q ss_pred cc----CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 730 QE----QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 730 ~~----g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.. +...+ ++++. ++++|+++++.|++++
T Consensus 336 ~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l 368 (381)
T 1v2d_A 336 FYLEDPPKDLFRFAFCK--TEEELHLALERLGRVV 368 (381)
T ss_dssp GCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred hCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHH
Confidence 32 34566 88875 8999999999998775
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.4e-08 Score=121.25 Aligned_cols=277 Identities=10% Similarity=-0.036 Sum_probs=165.3
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH-HHHcCce
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA-AMMAFVR 529 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka-a~l~gv~ 529 (891)
.+++.+.... .++ +++|++++|..++.+... +.-.|+++..+|.|+..+ +.+.|.+
T Consensus 181 ~lA~~~gae~--~i~--v~nGtt~an~~ai~al~~-------------------pGD~VLv~~~~H~S~~~~~~~l~Ga~ 237 (730)
T 1c4k_A 181 HAARVYNADK--TYF--VLGGSSNANNTVTSALVS-------------------NGDLVLFDRNNHKSVYNSALAMAGGR 237 (730)
T ss_dssp HHHHHTTCSE--EEE--ESSHHHHHHHHHHHHHCC-------------------TTCEEEEETTCCHHHHHHHTTTTCCE
T ss_pred HHHHHHCCCc--EEE--ECCHHHHHHHHHHHHhcC-------------------CCCEEEEcCCchHHHHHHHHHHCCCE
Confidence 4445554432 344 566777898888776311 123589999999999998 6788889
Q ss_pred EEEecCCCC-----CCcCHHHH-----HHHHHhh-hh---cCC--ccEEEEec--CCccc--------hhhh-----hc-
Q psy852 530 LKILEPDDK-----NSLRGATL-----RQVMQQD-ET---MGY--IPFFVSTT--LGTTS--------CYRK-----SQ- 577 (891)
Q Consensus 530 v~~Vp~d~~-----G~mD~~~L-----e~aI~~d-~~---~g~--ip~~Vvat--aGTT~--------c~~~-----ld- 577 (891)
++.++.+.+ |.+|+++| +++|++. .. ... ..++++.. .|+.. |+++ +|
T Consensus 238 ~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDe 317 (730)
T 1c4k_A 238 PVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDS 317 (730)
T ss_dssp EEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEEC
T ss_pred EEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEc
Confidence 888876432 56899998 8887653 11 101 12333322 24332 3321 11
Q ss_pred ----------------CCC----Ccc----EEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccC
Q psy852 578 ----------------GIE----YAD----SFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 633 (891)
Q Consensus 578 ----------------Gi~----~aD----SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~ 633 (891)
.+. ++| .++.++||++++|.+.|+++++++.. .....++... .+...-
T Consensus 318 Ah~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l-----~g~~~~i~~~---~~~~~~ 389 (730)
T 1c4k_A 318 AWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHI-----KGQLRYCDHK---HFNNSF 389 (730)
T ss_dssp TTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGG-----TTSTTCCCHH---HHHHHH
T ss_pred ccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhh-----cCcccccCHH---HHHHHH
Confidence 121 477 99999999999999999999998732 0111111100 000000
Q ss_pred Cccccccc-cc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCc--------------------
Q psy852 634 WGIPLSRR-FR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVR-------------------- 690 (891)
Q Consensus 634 ~ti~~SRr-~~-aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~-------------------- 690 (891)
...+.+-+ .. ...+-.+++.+..++..+.+++..++++++.+.|++ +++++++.+..
T Consensus 390 ~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 469 (730)
T 1c4k_A 390 NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDY 469 (730)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchh
Confidence 00000111 00 112223334444434466788999999999999998 79999875421
Q ss_pred -----------------------eeEEEEEecCCc--c---hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecC
Q psy852 691 -----------------------LGLVCFRLRSEN--N---LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQE 741 (891)
Q Consensus 691 -----------------------~~iV~Fr~~~~~--~---~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~ 741 (891)
...|.|..++.+ . .........+.+.|.++|+.. ...+...+ ++++.
T Consensus 470 ~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v----~~~~~~~ir~~~s~ 545 (730)
T 1c4k_A 470 WRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIP----EKSDLNSILFLMTP 545 (730)
T ss_dssp GBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCC----SEECSSEEEEECCT
T ss_pred hccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEE----EECCCCeEEEEeCC
Confidence 112667764310 0 111234567888898889762 22345556 88999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 742 ~tT~edId~li~~L~ei~~~~ 762 (891)
.+|++++++++++|+++....
T Consensus 546 g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 546 AETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999887533
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.7e-08 Score=112.12 Aligned_cols=265 Identities=9% Similarity=-0.008 Sum_probs=162.7
Q ss_pred HHHHHHHhhc--cCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 448 LAKLFEGKVR--RDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 448 lAr~l~~~L~--~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
+++++.+... ..+. +|+ +++|++|++..++.++.. +...|++...+|.+...++..
T Consensus 105 l~~~l~~~~g~~~~~~-~v~--~~~g~~ea~~~a~~~~~~-------------------~gd~Vi~~~~~y~~~~~~~~~ 162 (421)
T 3l8a_A 105 VIDWERKEHDYAVVKE-DIL--FIDGVVPAISIALQAFSE-------------------KGDAVLINSPVYYPFARTIRL 162 (421)
T ss_dssp HHHHHHHHHCCCCCGG-GEE--EESCHHHHHHHHHHHHSC-------------------TEEEEEEEESCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHH-HEE--EcCCHHHHHHHHHHHhcC-------------------CCCEEEECCCCcHHHHHHHHH
Confidence 4445544443 2222 455 788999999998877521 123477888889898888888
Q ss_pred cCceEEEecCC-CC--CCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC----
Q psy852 526 AFVRLKILEPD-DK--NSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI---- 579 (891)
Q Consensus 526 ~gv~v~~Vp~d-~~--G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi---- 579 (891)
.+.+++.+|.+ ++ +.+|+++|+++|++.. ...++++ +..|... |.++ +|.+
T Consensus 163 ~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~---~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 239 (421)
T 3l8a_A 163 NDHRLVENSLQIINGRFEIDFEQLEKDIIDNN---VKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDL 239 (421)
T ss_dssp TTEEEEEEECEEETTEEECCHHHHHHHHHHTT---EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTC
T ss_pred CCCEEEeccccccCCCeeeCHHHHHHHhhccC---CeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 89999999975 33 4799999999998421 1123333 2345441 4331 1211
Q ss_pred -----------------CCccEEEEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc
Q psy852 580 -----------------EYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR 641 (891)
Q Consensus 580 -----------------~~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr 641 (891)
...+-...+++|+++ ....+|+++.++++.. +.+..... .++....-.
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~-~~~~~~~~-------------~~~~~~~n~ 305 (421)
T 3l8a_A 240 ALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLR-RKFQYRQL-------------ANNQHEVPT 305 (421)
T ss_dssp BCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHH-HHHHHHHH-------------HTTCSCCCH
T ss_pred ccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHH-HHHHHHHH-------------hcccCCCCH
Confidence 122366788999997 4477899998855432 22211000 000101111
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-C
Q psy852 642 FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-S 720 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~ 720 (891)
+....+..+++. +.+.+++..++..+++++|.+.|++.+++++..+....++++.+... .....++.+.|.+ .
T Consensus 306 ~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~l~~~~ 379 (421)
T 3l8a_A 306 VGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAY-----AIAQPQLSEKLQNEA 379 (421)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGG-----TCCTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEecccc-----CCCHHHHHHHHHHhC
Confidence 222233333332 44557788888889999999999887889887655544555776531 1134567888864 5
Q ss_pred CcEEEeeccc--cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 721 GRLHMVPASQ--EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 721 G~~~~s~s~~--~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
|+++..+... .+..++ +++. +++++|+++++.|++++
T Consensus 380 gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 380 KVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVF 419 (421)
T ss_dssp CEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred CEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 8875554433 334566 8876 68999999999998764
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=8.1e-08 Score=108.38 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=73.9
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhc--CCcceEE-EeecccCccccccC---HHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM--GYIPFFV-STTLGTTSCCSFDN---LAEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~--g~~p~~V-~~t~Gtt~~GavDp---l~~I 217 (891)
.|++..-+|++...++...|.+++.+|.+++| +|+++|++.+++..++ +..+.+| +.+..+|.+|.+-| +++|
T Consensus 135 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l 213 (425)
T 1vp4_A 135 YCVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKAL 213 (425)
T ss_dssp EEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHH
Confidence 37777788999988887778899999998876 9999999999863211 1224454 56778899999976 5688
Q ss_pred HHHHHHcCCceeeeccccCC
Q psy852 218 GPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~ 237 (891)
+++|+++|+++++|.+|+++
T Consensus 214 ~~~~~~~~~~li~De~~~~~ 233 (425)
T 1vp4_A 214 VEIAEKYDLFIVEDDPYGAL 233 (425)
T ss_dssp HHHHHHTTCEEEEECSSTTC
T ss_pred HHHHHHcCCEEEEECCCccc
Confidence 89999999999999999664
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=98.83 E-value=9e-08 Score=107.11 Aligned_cols=257 Identities=9% Similarity=0.033 Sum_probs=153.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CCCCcCHHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATL 546 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~G~mD~~~L 546 (891)
++++|++++..++.+.. . .+.-.|+++...|.+...++...|.+++.++++ +++.+|+++|
T Consensus 58 ~~~sgt~al~~al~~l~---~---------------~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l 119 (377)
T 3ju7_A 58 TVANATLGLMAAIQLKK---R---------------KKGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVL 119 (377)
T ss_dssp EESCHHHHHHHHHHHHS---C---------------TTCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHH
T ss_pred EeCCHHHHHHHHHHHcC---C---------------CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHH
Confidence 56789999988876531 0 112358899999999999998899999999998 5789999999
Q ss_pred HHHH-HhhhhcCCccEEEEecCCccc--------hhhh-----hcC------------C----CCccEEEEcCcccCCcc
Q psy852 547 RQVM-QQDETMGYIPFFVSTTLGTTS--------CYRK-----SQG------------I----EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 547 e~aI-~~d~~~g~ip~~VvataGTT~--------c~~~-----ldG------------i----~~aDSIs~d~HK~L~~P 596 (891)
+++| ++... ...++++...|+.. |+ + .|+ + ..++.+++++||+++++
T Consensus 120 ~~~i~~~~~~--tk~v~~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g 196 (377)
T 3ju7_A 120 WDKIEELKEE--VAIVVPYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGIG 196 (377)
T ss_dssp HHHHHHHGGG--EEEECCBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCCB
T ss_pred HHHHhcCCCC--ceEEEEECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCCC
Confidence 9999 44300 11222344456543 33 2 111 1 23566777799999973
Q ss_pred cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy852 597 FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGK 676 (891)
Q Consensus 597 ~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~ 676 (891)
..|+++.++++.....-......... .+.....+. .-+...+..|..+ .+.+.+.+.+++..++++++.+.
T Consensus 197 -~gG~~~~~~~~l~~~~~~~~~~g~~~----~~~~~~~g~--~~~~~~~~aa~~~--~~l~~l~~~~~~~~~~~~~~~~~ 267 (377)
T 3ju7_A 197 -EGGLIYSKNEEDIQRIKRMGNFGFDT----NRECTMMGF--NCKMSEYAAAIGI--ATMKKWDDKLKERTRISEWYKQL 267 (377)
T ss_dssp -SCEEEEESCHHHHHHHHHHTBTTBCT----TSCBCSSCC--BCCCCHHHHHHHH--HHHHTHHHHHHHHHHHHHHHHHH
T ss_pred -CcEEEEECCHHHHHHHHHHHhcCCCC----CCceeeccc--cCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666554322211111100000 000000111 1123344444433 34577888899999999999999
Q ss_pred hccCCCcEE-eCCC--c---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec--cc------c-----------
Q psy852 677 VRRDPRFEI-SNDV--R---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA--SQ------E----------- 731 (891)
Q Consensus 677 L~~~~~~ei-l~~~--~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s--~~------~----------- 731 (891)
|++++++.+ +.+. . ...+.+++.+. ...+.+.+.|.++|+...... .+ .
T Consensus 268 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 341 (377)
T 3ju7_A 268 LQSNGLMKKGWQLQKTEAVIQQFMPILCPEE------VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTN 341 (377)
T ss_dssp HHHTTTTTTTCBCCCCSCBCCSSEEEECCTT------SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHH
T ss_pred hcCCCCccccccCCCCCcceEEEEEEEeCCh------hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHH
Confidence 998876432 1111 1 12345555421 125789999999998643321 11 0
Q ss_pred --CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 --QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 --g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
....+ +.+++.+|++||+++++.|++++.
T Consensus 342 ~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~ 373 (377)
T 3ju7_A 342 KIAKRIVSLPLWEGMTKEIVEQIVICLGQKVV 373 (377)
T ss_dssp HHHHHEEEECCCTTCCHHHHHHHHHHHTC---
T ss_pred HHHhCEEECCCCCCCCHHHHHHHHHHHHHHHh
Confidence 01256 778889999999999999987764
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-07 Score=104.87 Aligned_cols=236 Identities=11% Similarity=0.087 Sum_probs=148.2
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHH
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQV 549 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~a 549 (891)
++|+++|..++.+... +.-.|+++...|.+...++.+.+.+++.++. +|+++|+++
T Consensus 126 ~sGt~a~~~~l~~~~~-------------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~le~~ 181 (409)
T 3kki_A 126 QSGWNANVGLLQTICQ-------------------PNTNVYIDFFAHMSLWEGARYANAQAHPFMH-----NNCDHLRML 181 (409)
T ss_dssp SCHHHHHHHHHHHHCC-------------------TTCEEEEETTSCHHHHHHHHHTTCEEEEECT-----TCHHHHHHH
T ss_pred cchHHHHHHHHHHhcC-------------------CCCEEEECCCcCHHHHHHHHHcCCeEEEecC-----CCHHHHHHH
Confidence 4567998877764311 2235788999999999999988988887775 689999999
Q ss_pred HHhhhhcCCccEEEEec---CCccc--------hhhh-----hc-------------------CC-CCccEEEEcCcccC
Q psy852 550 MQQDETMGYIPFFVSTT---LGTTS--------CYRK-----SQ-------------------GI-EYADSFNVNVNKWL 593 (891)
Q Consensus 550 I~~d~~~g~ip~~Vvat---aGTT~--------c~~~-----ld-------------------Gi-~~aDSIs~d~HK~L 593 (891)
|++.. ...++++.. .|+.. |.++ +| ++ +.+|.+..++||++
T Consensus 182 l~~~~---~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~ 258 (409)
T 3kki_A 182 IQRHG---PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTF 258 (409)
T ss_dssp HHHHC---SCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT
T ss_pred HHhcC---CeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhh
Confidence 98742 123333322 34443 4331 11 11 24789999999999
Q ss_pred CcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccc-cccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy852 594 LTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672 (891)
Q Consensus 594 ~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~ 672 (891)
+.+ .|+++.++. ...........|... .+- ......+..+++.+.. ..+..++..+++++
T Consensus 259 ~~~--gg~v~~~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~ 319 (409)
T 3kki_A 259 AYR--AGAIWCNNE-VNRCVPFISYPAIFS--------------STLLPYEAAGLETTLEIIES--ADNRRQHLDRMARK 319 (409)
T ss_dssp CSS--CEEEEESSS-GGGTHHHHCHHHHHS--------------BCCCHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHH
T ss_pred CCC--ceEEEECHH-HHHHHHHhCcCcccc--------------CCCcHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHH
Confidence 977 366555443 222111111111100 000 1111223333443322 25666777889999
Q ss_pred HHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec---cccCCeEE-EEecCCCCHHHH
Q psy852 673 FEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA---SQEQNDEV-FELQERKRKDDL 748 (891)
Q Consensus 673 L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s---~~~g~~~l-~sv~~~tT~edI 748 (891)
|.+.|++. ++++. ...+++.+++.+ .....++.+.|.++|++..... ...+...+ ++++..+|++||
T Consensus 320 l~~~L~~~-g~~~~--~~~~~~~~~~~~------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i 390 (409)
T 3kki_A 320 LRIGLSQL-GLTIR--SESQIIGLETGD------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQI 390 (409)
T ss_dssp HHHHHHTT-TCCCC--CSSSEEEEEEES------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHH
T ss_pred HHHHHHHc-CCccC--CCCCEEEEEeCC------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHH
Confidence 99999886 56655 356788888753 2245678899999998743222 22345677 999989999999
Q ss_pred HHHHHHHHHHHH
Q psy852 749 AYKRSFFVRMLG 760 (891)
Q Consensus 749 d~li~~L~ei~~ 760 (891)
+++++.|++++.
T Consensus 391 ~~~~~~l~~~l~ 402 (409)
T 3kki_A 391 AKIIEVCSDAVN 402 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.7e-08 Score=107.09 Aligned_cols=244 Identities=11% Similarity=0.037 Sum_probs=153.3
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCCc
Q psy852 464 ISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSL 541 (891)
Q Consensus 464 Vv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~m 541 (891)
++ +++|+++++..++.+.. .+.-.|+++..+|++...++...|.+++.+|.++ ++.+
T Consensus 90 v~--~~~g~~~a~~~~~~~~~-------------------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 148 (389)
T 1gd9_A 90 IM--VLLGANQAFLMGLSAFL-------------------KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRL 148 (389)
T ss_dssp EE--EESSTTHHHHHHHTTTC-------------------CTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCC
T ss_pred EE--EcCChHHHHHHHHHHhC-------------------CCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCC
Confidence 55 68899999988876531 0123588888889999988888899999999875 4679
Q ss_pred CHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----h---------c-----------CCCCc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----S---------Q-----------GIEYA 582 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----l---------d-----------Gi~~a 582 (891)
|+++|+++++++. ..++++. ..|.+. |.++ + + +....
T Consensus 149 d~~~l~~~l~~~~----~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 224 (389)
T 1gd9_A 149 NVDELKKYVTDKT----RALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFER 224 (389)
T ss_dssp CHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGG
T ss_pred CHHHHHHhcCcCc----eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCC
Confidence 9999999997531 1222222 245442 3321 1 1 11245
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHh--
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLS-- 657 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~-- 657 (891)
|.+..++||+++.| ..+|+++.+++ +.+.+.....+. .++. ..+.+++....+ +..
T Consensus 225 ~i~~~s~sK~~~~~G~r~G~~~~~~~--~~~~l~~~~~~~-----------~~~~------~~~~~~a~~~~l~~~~~~~ 285 (389)
T 1gd9_A 225 TITVNGFSKTFAMTGWRLGFVAAPSW--IIERMVKFQMYN-----------ATCP------VTFIQYAAAKALKDERSWK 285 (389)
T ss_dssp EEEEEESTTTTTCGGGCCEEEECCHH--HHHHHHHHHTTT-----------TCSC------CHHHHHHHHHHHTCHHHHH
T ss_pred EEEEecChhhcCCcccceEEEEECHH--HHHHHHHHHhhh-----------ccCC------CHHHHHHHHHHHhCCCcch
Confidence 78899999998745 45799888642 222221100000 0111 112223333333 233
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCe
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQND 734 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~ 734 (891)
.+++..++..++++++.+.|++. ++++..+.....+++++.+. +....++.+.|. +.|+.+..+... .+..
T Consensus 286 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~ 359 (389)
T 1gd9_A 286 AVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDT-----GLTSKKFSELMLKEARVAVVPGSAFGKAGEG 359 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGG-----TCCHHHHHHHHHHHTCEECEEGGGGCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEeccCC-----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCC
Confidence 67778888889999999999987 77776543333566666421 113567888887 789875544332 2244
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+ ++++. ++++|+++++.|++.+
T Consensus 360 ~iRi~~~~--~~~~i~~~l~~l~~~~ 383 (389)
T 1gd9_A 360 YVRISYAT--AYEKLEEAMDRMERVL 383 (389)
T ss_dssp BEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHHHH
Confidence 56 88764 8999999999998776
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-07 Score=105.48 Aligned_cols=255 Identities=11% Similarity=0.009 Sum_probs=156.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH-HcCceEEEecCCCC--C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-MAFVRLKILEPDDK--N 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~-l~gv~v~~Vp~d~~--G 539 (891)
+++ +++|++++|..++.+... +.-.|++....|.+...++. ..|.+++.+|.+++ .
T Consensus 113 ~v~--~~~gg~~a~~~~~~~l~~-------------------~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 171 (435)
T 3piu_A 113 HLV--LTAGATSANETFIFCLAD-------------------PGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGF 171 (435)
T ss_dssp GEE--EEEHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTS
T ss_pred HEE--EcCChHHHHHHHHHHhcC-------------------CCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCC
Confidence 555 788999999988866421 11247788888988888877 68899999998764 5
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE-e----cCCccc-----------hhhh-----hcCC---------C---------
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS-T----TLGTTS-----------CYRK-----SQGI---------E--------- 580 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv-a----taGTT~-----------c~~~-----ldGi---------~--------- 580 (891)
.+|+++|+++|++....+..+-+|+ . ..|++. |.++ +|.+ .
T Consensus 172 ~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~ 251 (435)
T 3piu_A 172 QITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLK 251 (435)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcc
Confidence 6999999999987544332232222 2 245543 4331 1211 0
Q ss_pred -----------CccEEEEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHH
Q psy852 581 -----------YADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLW 648 (891)
Q Consensus 581 -----------~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW 648 (891)
..+-+..++||+++ ....+|+++.+++... ..+.....+. + . ..+.++
T Consensus 252 ~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~-~~~~~~~~~~-------------~--~----~~~~~~ 311 (435)
T 3piu_A 252 DRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVV-AAATKMSSFG-------------L--V----SSQTQH 311 (435)
T ss_dssp C-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHH-HHHHHHGGGS-------------C--C----CHHHHH
T ss_pred ccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHH-HHHHHHhhcC-------------C--C----CHHHHH
Confidence 01155789999997 4467899988655322 2221100000 0 0 112222
Q ss_pred HHHHHHH-----HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhC-Cc
Q psy852 649 FVIRTYG-----LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINAS-GR 722 (891)
Q Consensus 649 ~~L~~lG-----~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~ 722 (891)
.....+. .+.+.+..++..+++++|.+.|++. +++++.+.....+.+.+.............++.++|.++ |+
T Consensus 312 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi 390 (435)
T 3piu_A 312 LLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHL 390 (435)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCE
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCE
Confidence 2222222 2244566677788899999999886 788775544467788875321110011345788888776 88
Q ss_pred EEEeeccc--cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 723 LHMVPASQ--EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 723 ~~~s~s~~--~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+..+... .+...+ +++... ++++|+++++.|++++.
T Consensus 391 ~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~ 430 (435)
T 3piu_A 391 NISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVG 430 (435)
T ss_dssp ECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHH
T ss_pred EEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHH
Confidence 75544432 345667 888655 99999999999998764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.2e-08 Score=107.51 Aligned_cols=249 Identities=9% Similarity=0.075 Sum_probs=154.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+++ +++|+++++..++.++.. +.-.|++..-+|.+...++...|.+++.+|.+++| +|
T Consensus 100 ~v~--~t~g~t~a~~~~~~~~~~-------------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d 157 (407)
T 2zc0_A 100 NIV--ITIGGTGALDLLGRVLID-------------------PGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDG-MR 157 (407)
T ss_dssp GEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-EC
T ss_pred eEE--EecCHHHHHHHHHHHhcC-------------------CCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CC
Confidence 455 788999999988877531 11247788888888888888889999999988776 99
Q ss_pred HHHHHHHHHhhhhcC-CccEE-EEec----CCccc-----------hhhh-----hc---------C-----C---C--C
Q psy852 543 GATLRQVMQQDETMG-YIPFF-VSTT----LGTTS-----------CYRK-----SQ---------G-----I---E--Y 581 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g-~ip~~-Vvat----aGTT~-----------c~~~-----ld---------G-----i---~--~ 581 (891)
+++|+++|++....+ ..-++ ++.+ .|+.. |.++ +| | + . .
T Consensus 158 ~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 237 (407)
T 2zc0_A 158 VDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEG 237 (407)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSC
T ss_pred HHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCC
Confidence 999999998422121 12222 2222 45432 3331 11 1 0 0 1
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH----
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL---- 656 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~---- 656 (891)
.+-+..+.||+++ | ..+|+++.++ + +.+.+...... ++.. ...+.+++....+..
T Consensus 238 ~~i~~~s~sK~~~-~G~r~G~~~~~~-~-~~~~~~~~~~~-------------~~~~----~~~~~~~~~~~~l~~~~~~ 297 (407)
T 2zc0_A 238 RVIVAGTLSKVLG-TGFRIGWIIAEG-E-ILKKVLMQKQP-------------IDFC----APAISQYIALEYLKRGYFE 297 (407)
T ss_dssp CEEEEEESTTTTC-TTSCCEEEECCH-H-HHHHHHHHHTT-------------TTSS----SCHHHHHHHHHHHHTTHHH
T ss_pred CEEEEcccccccC-CCcceEEEecCH-H-HHHHHHHHHHh-------------hcCC----CCHHHHHHHHHHHHcCCch
Confidence 1235667899999 5 4589998853 2 22222210000 0000 112223333333321
Q ss_pred -hhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhC-CcEEEeecccc--
Q psy852 657 -SGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINAS-GRLHMVPASQE-- 731 (891)
Q Consensus 657 -~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~s~~~-- 731 (891)
..+++..++..+++++|.+.|++ .+++++..+.....++|++++. ....++.+.|.++ |+.+..+....
T Consensus 298 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~gi~v~~g~~~~~~ 371 (407)
T 2zc0_A 298 KYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEG------ADGISFANELMEREGVVVVPGKPFYTD 371 (407)
T ss_dssp HHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTT------CCHHHHHHHHHHHTCEECBCSGGGCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCC------CCHHHHHHHHHHhCCeEEECchhccCC
Confidence 34556667778889999999987 5777776555556788888531 1356788889888 98755443331
Q ss_pred --CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 --QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 --g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+...+ ++++.. |++||+++++.|++++.
T Consensus 372 ~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~ 402 (407)
T 2zc0_A 372 ESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYK 402 (407)
T ss_dssp SCCTTEEEEECSSS-CTTHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHH
Confidence 34567 988776 89999999999998764
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.9e-08 Score=108.44 Aligned_cols=88 Identities=6% Similarity=0.060 Sum_probs=67.9
Q ss_pred EecCCCC-hHHHHHHHHcCCeEEEEecCC----------CCcccHHHHHHHHHhhhhcCCcceEEEeecccC-ccccccC
Q psy852 146 YCSKEAH-SCVEKAAMMAFVRLKILEPDD----------KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SCCSFDN 213 (891)
Q Consensus 146 ~~S~~~H-~Sv~kaa~~~~~~v~~V~~d~----------~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt-~~GavDp 213 (891)
+++..+| .+...++...|.+++.+++++ ++.+|+++|++++++.+. ..+.+|+++..+| .+|.+-|
T Consensus 116 i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~~~ 193 (456)
T 2ez2_A 116 YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA--ENIAYICLAVTVNLAGGQPVS 193 (456)
T ss_dssp EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCC
T ss_pred EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc--cceeEEEEeccCCCCCCccCC
Confidence 3445566 777777777788999999874 278999999999986531 1234666665555 8998876
Q ss_pred ---HHHHHHHHHHcCCceeeecccc
Q psy852 214 ---LAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 214 ---l~~I~~i~~~~~~~lHvDaA~G 235 (891)
+++|+++|+++|++|++|.+|+
T Consensus 194 ~~~l~~i~~la~~~~i~li~De~~~ 218 (456)
T 2ez2_A 194 MANMRAVRELTEAHGIKVFYDATRC 218 (456)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred HHHHHHHHHHHHHcCCeEEEEcccc
Confidence 9999999999999999999984
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.81 E-value=7.3e-08 Score=104.51 Aligned_cols=80 Identities=9% Similarity=0.085 Sum_probs=66.9
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+...++. ..+.+++.++. +|+++|++.+++. +.+|+++..+|.+|.+.|+++|.+
T Consensus 39 ~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~ 107 (331)
T 1pff_A 39 HLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-----AVPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVK 107 (331)
T ss_dssp EEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----TSTTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----CCHHHHHHhhcCC------CeEEEEECCCCCcCcccCHHHHHH
Confidence 37888899999877762 35778888876 4888998887643 457888999999999999999999
Q ss_pred HHHH-cCCceeeeccc
Q psy852 220 VAKE-FDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~-~~~~lHvDaA~ 234 (891)
+|++ +|+++++|.||
T Consensus 108 ~~~~~~~~~li~D~a~ 123 (331)
T 1pff_A 108 QARKQKDILVIVDNTF 123 (331)
T ss_dssp HHTTSSSCEEEEECTT
T ss_pred HHhhhcCCEEEEECCC
Confidence 9999 99999999988
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.81 E-value=5e-08 Score=108.51 Aligned_cols=247 Identities=9% Similarity=0.022 Sum_probs=155.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC------C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP------D 536 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~------d 536 (891)
+++ +++|+++++..++.+.. .+.-.|+++.-.|.+...++...|.+++.+|. +
T Consensus 104 ~i~--~~~g~~~a~~~~~~~l~-------------------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (407)
T 3nra_A 104 GLI--ITPGTQGALFLAVAATV-------------------ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADE 162 (407)
T ss_dssp SEE--EESHHHHHHHHHHHTTC-------------------CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCC
T ss_pred cEE--EeCCcHHHHHHHHHHhC-------------------CCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccC
Confidence 455 67899999988775531 11235888888999999999999999999998 4
Q ss_pred CCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C----------
Q psy852 537 DKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G---------- 578 (891)
Q Consensus 537 ~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G---------- 578 (891)
.++.+|+++|+++|++.+ ..++++. ..|+.. |.++ +| |
T Consensus 163 ~~~~~d~~~l~~~l~~~~----~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~ 238 (407)
T 3nra_A 163 TRAGLDLTGLEEAFKAGA----RVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEA 238 (407)
T ss_dssp SSCCBCHHHHHHHHHTTC----CEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCT
T ss_pred cCCCcCHHHHHHHHhhCC----cEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcC
Confidence 788999999999998632 1222322 234443 3331 11 1
Q ss_pred --CCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH-
Q psy852 579 --IEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY- 654 (891)
Q Consensus 579 --i~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l- 654 (891)
....+-+..++||+++.| ..+|+++...+ +.+.+.....+. .++. ..+.+++....+
T Consensus 239 ~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~--~~~~l~~~~~~~-----------~~~~------~~~~~~a~~~~l~ 299 (407)
T 3nra_A 239 AVDAENVVTIMGPSKTESLSGYRLGVAFGSRA--IIARMEKLQAIV-----------SLRA------AGYSQAVLRGWFD 299 (407)
T ss_dssp TSCGGGEEEEECSSSTTCCGGGCCEEEEECHH--HHHHHHHHHHHH-----------TSSS------CHHHHGGGGGTTC
T ss_pred cccCCcEEEEeCcccccCCCeeeEEEEEcCHH--HHHHHHHHHhhh-----------ccCC------ChHHHHHHHHHHh
Confidence 012346778899999844 67888877432 222221100000 0000 011111222222
Q ss_pred -HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeecccc-
Q psy852 655 -GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQE- 731 (891)
Q Consensus 655 -G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~~- 731 (891)
+...+.+..++..+++++|.+.|++.+++++..+.....+.+.+... +.....+.+.|.+ .|+.+..+....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~~~~ 374 (407)
T 3nra_A 300 EAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL-----AVAPAEFVKILRLQAGVVVTPGTEFSP 374 (407)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCB-----SSCHHHHHHHHHHHHCEECEEGGGTCT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCC-----CCCHHHHHHHHHHhCCEEEeCchhhCC
Confidence 22456777888889999999999998888887655545666666432 1245678888865 598755444332
Q ss_pred -CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 -QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 -g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+...+ ++++. ++++|+++++.|++++.
T Consensus 375 ~~~~~iRis~~~--~~~~i~~~~~~l~~~~~ 403 (407)
T 3nra_A 375 HTADSVRLNFSQ--DHEAAVAAARRIVTLVE 403 (407)
T ss_dssp TCTTBEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCC--CHHHHHHHHHHHHHHHH
Confidence 34556 88763 89999999999998763
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.6e-08 Score=105.33 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=61.1
Q ss_pred EEEecCCCChHHHHH--H-HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc-ccccCHHHH--
Q psy852 144 MAYCSKEAHSCVEKA--A-MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-CSFDNLAEI-- 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka--a-~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~-GavDpl~~I-- 217 (891)
+|+++...|++.... . ...+.+++.++. +++.+|+++|+++ .++ +.+|+++-.+|.+ |.+.|++++
T Consensus 91 vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~~~------~~~v~~~~p~n~~~G~~~~~~~l~~ 162 (359)
T 3pj0_A 91 RVAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-REP------VSSVLIELPQREIGGQLPAFEELEK 162 (359)
T ss_dssp EEEECTTCHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-SSC------CSEEEEESSBGGGTSBCCCHHHHHH
T ss_pred EEEEeccceeeehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-cCC------ceEEEEEecccCCCcccCCHHHHHH
Confidence 477777888877542 2 345778888887 5789999999987 222 3456665555555 788776655
Q ss_pred -HHHHHHcCCceeeeccc
Q psy852 218 -GPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 218 -~~i~~~~~~~lHvDaA~ 234 (891)
+++|+++|++||+|+|+
T Consensus 163 l~~~~~~~~~~li~D~a~ 180 (359)
T 3pj0_A 163 ISEYCHEQGISLHLDGAR 180 (359)
T ss_dssp HHHHHHHHTCEEEEEETT
T ss_pred HHHHHHHcCCEEEEECcc
Confidence 99999999999999987
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-07 Score=103.85 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCc
Q psy852 54 SCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPF 133 (891)
Q Consensus 54 ~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~ 133 (891)
...++.+.+.+++.+..|.+.+ |+.+ .+++||+...++....+ ..
T Consensus 69 g~~~lr~~ia~~~~~~~g~~~~-------------~~~i--------------~~t~g~~~al~~~~~~l--~~------ 113 (385)
T 1b5p_A 69 GIPELREALAEKFRRENGLSVT-------------PEET--------------IVTVGGSQALFNLFQAI--LD------ 113 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCC-------------GGGE--------------EEESHHHHHHHHHHHHH--CC------
T ss_pred CCHHHHHHHHHHHHHHhCCCCC-------------hHHE--------------EEcCChHHHHHHHHHHh--cC------
Confidence 3568888889999888776432 1111 13567654322222222 11
Q ss_pred cccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 134 VDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 134 ~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
+...|+++.-+|.+...++...|.+++.|++++ ++.+|+++|++++++. +.+|+++..+|.||.+
T Consensus 114 -------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~ 180 (385)
T 1b5p_A 114 -------PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAV 180 (385)
T ss_dssp -------TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCC
T ss_pred -------CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCC------CEEEEEeCCCCCCCCC
Confidence 122377777789999888877788999999985 4589999999888643 3466677789999998
Q ss_pred cC---HHHHHHHHHHcCCceeeeccccC
Q psy852 212 DN---LAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 212 Dp---l~~I~~i~~~~~~~lHvDaA~GG 236 (891)
-| +++|+++|+++|++|++|.+|+.
T Consensus 181 ~~~~~l~~i~~~~~~~~~~li~De~~~~ 208 (385)
T 1b5p_A 181 YPKEVLEALARLAVEHDFYLVSDEIYEH 208 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEccchh
Confidence 55 89999999999999999999954
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.6e-08 Score=108.40 Aligned_cols=163 Identities=12% Similarity=-0.036 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..|.+...+...+-+.....|.......++++.+.+++.+.+|++.... +.+ .+
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~------------~~i--------------~~ 90 (410)
T 3e2y_A 37 PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPN------------EEI--------------LV 90 (410)
T ss_dssp CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTT------------TSE--------------EE
T ss_pred CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCC------------CCE--------------EE
Confidence 3455555554444332121222222357889999999999998764310 011 13
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC-----------CCCcc
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-----------DKNSL 177 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-----------~~g~i 177 (891)
++||+......+..+ . . +.-.|++..-+|.+....+...+.+++.++.+ .++.+
T Consensus 91 ~~g~~~a~~~~~~~~-~-~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 155 (410)
T 3e2y_A 91 AVGAYGSLFNSIQGL-V-D-------------PGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTF 155 (410)
T ss_dssp ESHHHHHHHHHHHHH-C-C-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEEC
T ss_pred eCCcHHHHHHHHHHh-c-C-------------CCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcC
Confidence 567654332222222 1 1 11236777778888888887778899999876 35679
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
|+++|++++++. +.+|+++..+|.+|.+ +++++|+++|+++|+++++|.+|+++.
T Consensus 156 d~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~ 213 (410)
T 3e2y_A 156 DPRELESKFSSK------TKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLV 213 (410)
T ss_dssp CHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred CHHHHHhhcCCC------ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcc
Confidence 999999888543 4467777889999999 789999999999999999999996544
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=106.42 Aligned_cols=138 Identities=10% Similarity=-0.015 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC
Q psy852 53 PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP 132 (891)
Q Consensus 53 p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~ 132 (891)
+...++++.+.+++.+.+|.+.+.. +.+ .+++||+......+..+ . .
T Consensus 85 ~g~~~lr~~ia~~~~~~~g~~~~~~------------~~v--------------~~t~G~~~al~~~~~~l-~-~----- 131 (404)
T 2o1b_A 85 HGKEAFKQAIVDFYQRQYNVTLDKE------------DEV--------------CILYGTKNGLVAVPTCV-I-N----- 131 (404)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTT------------TSE--------------EEESSHHHHHHHHHHHH-C-C-----
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCc------------ccE--------------EEcCCcHHHHHHHHHHh-c-C-----
Confidence 3567899999999999889862200 000 13567654322222222 1 1
Q ss_pred ccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCC-cccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 133 FVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN-SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 133 ~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g-~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
+...|++..-+|.+...++...+.+++.++.+++| .+|+++|+++++.. +.+|+++..+|.+|.+
T Consensus 132 --------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~ 197 (404)
T 2o1b_A 132 --------PGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDK------TKLIYLTYPNNPTGST 197 (404)
T ss_dssp --------TTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHH------EEEEEECSSCTTTCCC
T ss_pred --------CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccC------ceEEEEcCCCCCCCcc
Confidence 11236777778888888887778899999998744 58999999998643 3466667788999999
Q ss_pred cC---HHHHHHHHHHcCCceeeeccccCC
Q psy852 212 DN---LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 212 Dp---l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
-| +++|+++|+++|+++++|.+|+++
T Consensus 198 ~~~~~l~~l~~~~~~~~~~li~De~~~~~ 226 (404)
T 2o1b_A 198 ATKEVFDEAIAKFKGTDTKIVHDFAYGAF 226 (404)
T ss_dssp CCHHHHHHHHHHHTTSSCEEEEECTTTTC
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccchhc
Confidence 75 788999999999999999999653
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.5e-08 Score=110.19 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=95.7
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIED 98 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~ 98 (891)
.|+++.++... |.+...+...+. .....|..++...++++ ++++++|.+.-
T Consensus 42 ~ylD~~~~~~~-~~v~~a~~~~l~-~~~~~y~~~~~~~~l~~----~la~~~~~~~v----------------------- 92 (467)
T 2oqx_A 42 VFIDLLTDSGT-GAVTQSMQAAMM-RGDEAYSGSRSYYALAE----SVKNIFGYQYT----------------------- 92 (467)
T ss_dssp CSEECSCCSSC-SCCCHHHHHHTT-SCCCCSSSCHHHHHHHH----HHHHHHCCSEE-----------------------
T ss_pred eeEecccCCCc-HHHHHHHHHHhc-cCcceeccCchhHHHHH----HHHHHhCcCcE-----------------------
Confidence 57777655444 555555554432 22223444565556654 56666665321
Q ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH-HHcCCeEEEE------ec
Q psy852 99 YMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MMAFVRLKIL------EP 171 (891)
Q Consensus 99 ~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa-~~~~~~v~~V------~~ 171 (891)
.+++||+.+.+. .+..++..... ..|...++- |+++ ..|+....+. ...+..+... ++
T Consensus 93 --------~~t~~gt~A~~~-al~~~~~~~~~----~~G~~~~d~-Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (467)
T 2oqx_A 93 --------IPTHQGRGAEQI-YIPVLIKKREQ----EKGLDRSKM-VAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDT 157 (467)
T ss_dssp --------EEEC--CCSHHH-HHHHHHHHHHH----HHCCCTTTC-EEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCT
T ss_pred --------EEcCCcHHHHHH-HHHHHhccccc----cCCCCccce-EEec-ccccccchhhhhccCcceeeccccccccC
Confidence 135677654443 33333332000 001000012 4555 5787655444 3444444332 23
Q ss_pred C----CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc-ccc---cCHHHHHHHHHHcCCceeeeccc
Q psy852 172 D----DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-CSF---DNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 172 d----~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~-Gav---Dpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+ .+|.+|+++|+++|++.. ...+.+|+++..++.+ |.+ +++++|+++|++||++||+|+|+
T Consensus 158 ~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~ 226 (467)
T 2oqx_A 158 GVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSAR 226 (467)
T ss_dssp TSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchh
Confidence 3 457899999999998631 0124577777777777 654 67899999999999999999887
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-07 Score=104.33 Aligned_cols=91 Identities=12% Similarity=0.018 Sum_probs=76.7
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEec--CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~--d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~ 219 (891)
|++..-+|.+....+...+.+++.++. ++++.+|+++|++.+++.. ..+.+++.+..+|.+|.+ +++++|++
T Consensus 124 vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~ 200 (397)
T 3fsl_A 124 VWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQ---AGSIVLLHPCCHNPTGADLTNDQWDAVIE 200 (397)
T ss_dssp EEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCC---TTCEEEECSSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCC---CCCEEEEeCCCCCCCCcCCCHHHHHHHHH
Confidence 778888999998888878889999998 5678999999999997531 224688888899999999 66679999
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|+++++|.+|+++.
T Consensus 201 ~~~~~~~~li~De~~~~~~ 219 (397)
T 3fsl_A 201 ILKARELIPFLDIAYQGFG 219 (397)
T ss_dssp HHHHTTCEEEEEESCTTSS
T ss_pred HHHhCCEEEEEecCchhhc
Confidence 9999999999999996644
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-06 Score=97.94 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=57.2
Q ss_pred cCCeEEEEecCC-CC----cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeecc
Q psy852 162 AFVRLKILEPDD-KN----SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGA 233 (891)
Q Consensus 162 ~~~~v~~V~~d~-~g----~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA 233 (891)
.+..++.+++|+ +| .+|+++|+++++... ..+.+|+++..+|.+|.+-| +.+|+++|+++|++||+|.+
T Consensus 171 ~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~ 247 (444)
T 3if2_A 171 VLPHIDEVTHDGEEGFFKYRVDFEALENLPALKE---GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNA 247 (444)
T ss_dssp CCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHT---TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCceEEecccccccCccccCCCHHHHHHHHHhcC---CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECC
Confidence 356788888886 44 799999999854311 12457777778999999999 88899999999999999999
Q ss_pred ccC
Q psy852 234 YAG 236 (891)
Q Consensus 234 ~GG 236 (891)
||.
T Consensus 248 ~~~ 250 (444)
T 3if2_A 248 YGM 250 (444)
T ss_dssp TCT
T ss_pred CCC
Confidence 953
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=6.1e-08 Score=107.96 Aligned_cols=241 Identities=8% Similarity=0.042 Sum_probs=155.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+++ +++|+++++..++.+... +.-.|+++..+|.+...++...|.+++.+|.++ ++.
T Consensus 103 ~v~--~~~g~t~al~~~~~~l~~-------------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 161 (389)
T 1o4s_A 103 QVV--VTNGAKQALFNAFMALLD-------------------PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQ 161 (389)
T ss_dssp GEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred HEE--EecCHHHHHHHHHHHhCC-------------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCC
Confidence 455 678999999988776411 122478888889999998888899999999875 568
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc-------------------CCCCc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ-------------------GIEYA 582 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld-------------------Gi~~a 582 (891)
+|+++|+++|++.+ ..++++. ..|++. |.++ +| +....
T Consensus 162 ~d~~~l~~~l~~~~----~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~ 237 (389)
T 1o4s_A 162 PSLEEVEGLLVGKT----KAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDR 237 (389)
T ss_dssp CCHHHHHHTCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTT
T ss_pred CCHHHHHHhcccCc----eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCc
Confidence 99999999987532 1222322 245542 3321 11 11356
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
|.+..++||+++.| ..+|+++.+++ +.+.+.....+ ..++ ...+.+++++..+.. ++++
T Consensus 238 ~i~~~s~sK~~~~~G~r~G~l~~~~~--~~~~l~~~~~~-----------~~~~------~~~~~~~a~~~~l~~-~~~~ 297 (389)
T 1o4s_A 238 IVYINGFSKSHSMTGWRVGYLISSEK--VATAVSKIQSH-----------TTSC------INTVAQYAALKALEV-DNSY 297 (389)
T ss_dssp EEEEEESTTTTTCGGGCCEEEECCHH--HHHHHHHHHHH-----------HTCS------CCHHHHHHHHHHTTC-CCHH
T ss_pred EEEEeechhhcCCcccceEEEEeCHH--HHHHHHHHhhh-----------cccC------CCHHHHHHHHHHHhc-cHHH
Confidence 88999999999744 34899988543 22222110000 0000 112344555555543 3777
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccccCCeEE-EEe
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQEQNDEV-FEL 739 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g~~~l-~sv 739 (891)
..++..++++++.+.|++. ++++..+.....++++++ . ...++.+.|. +.|+.+..+........+ +++
T Consensus 298 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~-------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~ 368 (389)
T 1o4s_A 298 MVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR-G-------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSF 368 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECS-S-------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhc-CCeeecCCcceEEEEeCC-C-------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEE
Confidence 7888889999999999887 777764433345566664 2 2467888886 789876544433323466 887
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei~ 759 (891)
+. ++++|+++++.|++.+
T Consensus 369 ~~--~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 369 AT--SIERLTEALDRIEDFL 386 (389)
T ss_dssp CS--CHHHHHHHHHHHHHHH
T ss_pred eC--CHHHHHHHHHHHHHHH
Confidence 73 8999999999988765
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-07 Score=99.53 Aligned_cols=161 Identities=11% Similarity=0.104 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSL 109 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~ 109 (891)
.|.+...+...+-+.....|...+...+++..+.+++.+..|.+.... +.+ .++
T Consensus 40 ~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~------~~v--------------------~~~ 93 (376)
T 2dou_A 40 PEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPR------REA--------------------LAL 93 (376)
T ss_dssp CHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTT------TSE--------------------EEE
T ss_pred CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------ccE--------------------EEc
Confidence 455554444433222111222223567888888888888889862210 000 135
Q ss_pred cchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhh
Q psy852 110 GGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQD 189 (891)
Q Consensus 110 ~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~ 189 (891)
+||+.........+ . . +.-.|++..-+|.+...++...|.+++.+|+++...+|+++|++.+++.
T Consensus 94 ~g~~~a~~~~~~~l-~-~-------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~ 158 (376)
T 2dou_A 94 IGSQEGLAHLLLAL-T-E-------------PEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWRE 158 (376)
T ss_dssp SSHHHHHHHHHHHH-C-C-------------TTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHH
T ss_pred CCcHHHHHHHHHHh-c-C-------------CCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccC
Confidence 67654322222222 1 1 1123777788899998888777889999998444569999999998643
Q ss_pred hhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCC
Q psy852 190 ETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 190 ~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+.+|+++..+|.+|.+-| +++|+++|+++|+++++|.+|+++
T Consensus 159 ------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~ 203 (376)
T 2dou_A 159 ------AKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQ 203 (376)
T ss_dssp ------EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred ------ceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhc
Confidence 346666778899999976 678889999999999999999654
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-07 Score=104.74 Aligned_cols=248 Identities=8% Similarity=0.018 Sum_probs=154.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+++ +++|+++++..++.++.. +.-.|+++..+|.+...++...|.+++.+|.++ ++.
T Consensus 103 ~v~--~t~g~~~al~~~~~~l~~-------------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 161 (406)
T 1xi9_A 103 DVR--VTAAVTEALQLIFGALLD-------------------PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQ 161 (406)
T ss_dssp GEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSE
T ss_pred HEE--EcCChHHHHHHHHHHhCC-------------------CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCc
Confidence 455 678999999988876510 122578888899999999988899999999874 567
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hcCC-----------------CCc-c
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQGI-----------------EYA-D 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ldGi-----------------~~a-D 583 (891)
+|+++|+++|++.+ ..++++. ..|.+. |.++ +|.+ ... |
T Consensus 162 ~d~~~l~~~l~~~~----~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 237 (406)
T 1xi9_A 162 PDIDDIRKKITDRT----KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPV 237 (406)
T ss_dssp ECHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCE
T ss_pred CCHHHHHHhhCcCc----eEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceE
Confidence 99999999997531 1222322 345542 3331 1211 123 5
Q ss_pred EEEEcCcccCCcc-cccEEEEE-eCCc---cchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HH
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWV-ADRY---KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GL 656 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llv-R~~~---~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~ 656 (891)
-+..++||+++.| ..+|++++ .++. .+.+.+.....+. ++ ...+.+++....+ +.
T Consensus 238 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~------------~~------~~~~~~~a~~~~l~~~~ 299 (406)
T 1xi9_A 238 IVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR------------LC------PNTPAQFAAIAGLTGPM 299 (406)
T ss_dssp EEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT------------CC------SCSHHHHHHHHHHHSCC
T ss_pred EEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh------------cC------CCHHHHHHHHHHHhCCc
Confidence 5777999999744 34899884 2330 2222221100000 01 0122333333333 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeE-EEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc--C
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGL-VCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE--Q 732 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~i-V~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~--g 732 (891)
+.+++..++..++++++.+.|++.+++++..+ ..+. +.+++... .+....++.+.|. +.|+.+..+.... +
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~ 374 (406)
T 1xi9_A 300 DYLKEYMKKLKERRDYIYKRLNEIPGISTTKP-QGAFYIFPKIEVG----PWKNDKEFVLDVLHNAHVLFVHGSGFGEYG 374 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC-CBSSEECCEECSC----SCSSHHHHHHHHHHHHCEECEEGGGGCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCeeecC-CeeEEEEEecCcc----CCCCHHHHHHHHHHhCCEEEeCchhcCCCC
Confidence 45777888889999999999999888887644 3343 33466421 0113567888886 7898755444332 2
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
...+ ++++ +++++|+++++.|+++++
T Consensus 375 ~~~lRis~~--~~~~~i~~~~~~l~~~l~ 401 (406)
T 1xi9_A 375 AGHFRAVFL--PPIEILEEAMDRFEKFMK 401 (406)
T ss_dssp TTBEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 4456 8886 899999999999988763
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-07 Score=101.12 Aligned_cols=242 Identities=8% Similarity=-0.016 Sum_probs=145.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH---HHHcCceEEEecCCCCCCcCHHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA---AMMAFVRLKILEPDDKNSLRGAT 545 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka---a~l~gv~v~~Vp~d~~G~mD~~~ 545 (891)
.++|++++..++.+....- ++.+|+++...|++.... +.+.+++++.+|. +++.+|+++
T Consensus 68 ~~~G~~a~~~al~~~~~~g-----------------d~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~ 129 (357)
T 3lws_A 68 FPSGTMAQQVALRIWSDET-----------------DNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA-ADRLMTLDE 129 (357)
T ss_dssp ESCHHHHHHHHHHHHHHHH-----------------TCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC-TTSCCCHHH
T ss_pred ecCcHHHHHHHHHHHhhcC-----------------CCcEEEecccceeeeeccchhhhccCcEEEEecC-CCCCcCHHH
Confidence 3678899988876654311 123688888999887662 3466888888885 568899999
Q ss_pred HHHHHHhhhhcCCccEEEEec----CCccc-----------hhh-----hhcC-----------C------CCccEEEEc
Q psy852 546 LRQVMQQDETMGYIPFFVSTT----LGTTS-----------CYR-----KSQG-----------I------EYADSFNVN 588 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vvat----aGTT~-----------c~~-----~ldG-----------i------~~aDSIs~d 588 (891)
|+++.+ ...++++.. .|++. |.+ ++|+ . ..+|.++.+
T Consensus 130 l~~~~~------~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s 203 (357)
T 3lws_A 130 IKALPD------IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYIS 203 (357)
T ss_dssp HHTCCS------CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEE
T ss_pred HhcCcC------cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEe
Confidence 998721 223444433 25443 333 1231 1 447999999
Q ss_pred CcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHH
Q psy852 589 VNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668 (891)
Q Consensus 589 ~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~ 668 (891)
+||++++|.| |+++. +++.+.........+ . .+.... ..-+......++ .+.+.+++..+
T Consensus 204 ~sK~~~~~~g-g~~~~-~~~~~~~~~~~~~~~-~-----------~~~~~~-~~~~~~~~~~l~-----~~~~~~~~~~~ 263 (357)
T 3lws_A 204 FYKGLGGIAG-AILAG-PAAFCQTARIWKRRY-G-----------GDLISL-YPYIVSADYYYE-----LRKDRMGQYYE 263 (357)
T ss_dssp SSSTTCCSSC-EEEEE-CHHHHHHHHHHHHHT-T-----------CCCSCC-HHHHHHHHHHHH-----HHTTCHHHHHH
T ss_pred ccccCCCCce-EEEEc-CHHHHHHHHHHHHHh-c-----------CCcccc-hHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 9999988988 66554 443332211110000 0 000000 000111112222 23344555678
Q ss_pred HHHHHHHHhccCCCcEEe-CCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-cCCeEE-EEecC---C
Q psy852 669 LAKLFEGKVRRDPRFEIS-NDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ-EQNDEV-FELQE---R 742 (891)
Q Consensus 669 lA~~L~~~L~~~~~~eil-~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~-~g~~~l-~sv~~---~ 742 (891)
+++++.+.|++++++++. .++..+.+++++.... ......+.+.|.++|+++..+... .+...+ ++++. .
T Consensus 264 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~ 339 (357)
T 3lws_A 264 QAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQA----ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGE 339 (357)
T ss_dssp HHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCH----HHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGG
T ss_pred HHHHHHHHHHhCCCCeeccCCCcceEEEEEecCCh----HHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhh
Confidence 899999999999999984 6677889999986431 123567888898899874433221 233355 77664 3
Q ss_pred CCHHHHHHHHHHHHHH
Q psy852 743 KRKDDLAYKRSFFVRM 758 (891)
Q Consensus 743 tT~edId~li~~L~ei 758 (891)
.+.++++++++.|.+.
T Consensus 340 ~~~~~l~~al~~l~~a 355 (357)
T 3lws_A 340 LDQQTRDAGFARLRQA 355 (357)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 6888888888877654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=9.9e-08 Score=105.18 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=74.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++...+|.+...++...|.+++.++++. .+.+|+++|++++++. +.+|+++..+|.+|.+-| +++|+
T Consensus 107 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i~ 180 (375)
T 3op7_A 107 HVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPT------TKMICINNANNPTGAVMDRTYLEELV 180 (375)
T ss_dssp EEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccC------CeEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 477788899998888877788999999874 4558999999998743 346677788899999999 99999
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++|+++++|.+|+++
T Consensus 181 ~la~~~~~~li~De~~~~~ 199 (375)
T 3op7_A 181 EIASEVGAYILSDEVYRSF 199 (375)
T ss_dssp HHHHTTTCEEEEECCSCCC
T ss_pred HHHHHcCCEEEEEcccccc
Confidence 9999999999999999653
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-07 Score=103.68 Aligned_cols=82 Identities=9% Similarity=0.024 Sum_probs=60.1
Q ss_pred EEEecCCCChHHHHHHHHcCCe------------EEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVR------------LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~------------v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
+|+.+..-|.+...++.+.+.+ +..++. .|+++|++++++. +.+|+++..++.+|.+
T Consensus 133 vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~ 201 (395)
T 1vef_A 133 FVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEE------TAAVILEPVQGEGGVR 201 (395)
T ss_dssp EEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTT------EEEEEECSEETTTTSE
T ss_pred EEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccC------EEEEEEeCccCCCCcc
Confidence 4555555566666566554432 334432 4899999988643 4577777778889998
Q ss_pred cC----HHHHHHHHHHcCCceeeeccccC
Q psy852 212 DN----LAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 212 Dp----l~~I~~i~~~~~~~lHvDaA~GG 236 (891)
.| +++|+++|+++|++|++|.|++|
T Consensus 202 ~~~~~~l~~i~~l~~~~~~~li~Dea~~~ 230 (395)
T 1vef_A 202 PATPEFLRAAREITQEKGALLILDEIQTG 230 (395)
T ss_dssp ECCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 77 99999999999999999999976
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=98.76 E-value=9.7e-07 Score=97.36 Aligned_cols=236 Identities=8% Similarity=-0.019 Sum_probs=152.4
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+... +.-.|++..-+|.+...++...|.+++.+|.++++.+|
T Consensus 94 ~v~--~~~G~~~al~~~~~~l~~-------------------~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d 152 (369)
T 3cq5_A 94 NLW--AANGSNEILQQLLQAFGG-------------------PGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRID 152 (369)
T ss_dssp GEE--EESHHHHHHHHHHHHHCS-------------------TTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCC
T ss_pred hEE--ECCChHHHHHHHHHHhcC-------------------CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCC
Confidence 455 678888988777655311 11247888888999998888889999999998888999
Q ss_pred HHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh-----hhcC--------------CCC---ccEEEEcC
Q psy852 543 GATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR-----KSQG--------------IEY---ADSFNVNV 589 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~-----~ldG--------------i~~---aDSIs~d~ 589 (891)
+++|++++++. ....+++.. ..|... |.. .+|. .+. .+-+..++
T Consensus 153 ~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 229 (369)
T 3cq5_A 153 MDVALEEIRAK---QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTM 229 (369)
T ss_dssp HHHHHHHHHHH---CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEES
T ss_pred HHHHHHHhhcc---CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEec
Confidence 99999999862 111223332 234443 111 0110 111 34778899
Q ss_pred cccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-hhHHHHHHHHH
Q psy852 590 NKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SGLQKYIRRHC 667 (891)
Q Consensus 590 HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G~~~~i~~~~ 667 (891)
||+++.| ..+|+++.+++ +.+.+..... .++ ...+.++++...+.. +.+.+..++..
T Consensus 230 sK~~~~~G~r~G~~~~~~~--~~~~l~~~~~-------------~~~------~~~~~~~a~~~~l~~~~~~~~~~~~~~ 288 (369)
T 3cq5_A 230 SKAFDFAGGRLGYFVANPA--FIDAVMLVRL-------------PYH------LSALSQAAAIVALRHSADTLGTVEKLS 288 (369)
T ss_dssp SSTTSCGGGCCEEEEECTH--HHHHHHTTSC-------------TTC------SCHHHHHHHHHHHHTHHHHHTHHHHHH
T ss_pred hHhcCCcccceEEEEeCHH--HHHHHHHcCC-------------CCC------CCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999755 45799988643 2222221100 011 123344444444432 34667777888
Q ss_pred HHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHH
Q psy852 668 ELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKD 746 (891)
Q Consensus 668 ~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~e 746 (891)
++++++.+.|++ .++++. ++..+.++|++. . ...++.+.|.+.|+.+..+ .....+ ++++ +++
T Consensus 289 ~~~~~l~~~L~~-~g~~~~-~~~~~~~~~~~~-~-------~~~~l~~~l~~~gi~v~~~---~~~~~iRis~~---~~~ 352 (369)
T 3cq5_A 289 VERVRVAARLEE-LGYAVV-PSESNFVFFGDF-S-------DQHAAWQAFLDRGVLIRDV---GIAGHLRTTIG---VPE 352 (369)
T ss_dssp HHHHHHHHHHHH-HTCEEE-CCSSSEEEEECC-S-------SHHHHHHHHHHTTEECBCC---SCTTEEEEECC---CHH
T ss_pred HHHHHHHHHHHh-CCCEEC-CCCCeEEEEECC-C-------CHHHHHHHHHHCCEEEEEC---CCCCeEEEEeC---CHH
Confidence 899999999987 478876 455678888774 2 2457888888889774333 223456 8876 789
Q ss_pred HHHHHHHHHHHHH
Q psy852 747 DLAYKRSFFVRML 759 (891)
Q Consensus 747 dId~li~~L~ei~ 759 (891)
|+++++++|+++.
T Consensus 353 ~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 353 ENDAFLDAAAEII 365 (369)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-07 Score=102.61 Aligned_cols=267 Identities=14% Similarity=0.138 Sum_probs=154.1
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccch-HHHHHHHHHcCc
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH-SCVEKAAMMAFV 528 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH-~Sv~Kaa~l~gv 528 (891)
+.+++.+.. + +++ +++||++++..++.++.. . ++ +++..+| .+...++...|.
T Consensus 82 ~~la~~~~~-~--~~~--~~~~gt~a~~~al~~l~~--------------~----gd---i~~~~~~~~~~~~~~~~~G~ 135 (456)
T 2ez2_A 82 RTVQELFGF-K--HIV--PTHQGRGAENLLSQLAIK--------------P----GQ---YVAGNMYFTTTRYHQEKNGA 135 (456)
T ss_dssp HHHHHHHCC-S--EEE--EESSHHHHHHHHHHHHCC--------------T----TC---EEEESSCCHHHHHHHHHTTC
T ss_pred HHHHHHhCC-C--cEE--EeCCcHHHHHHHHHHhCC--------------C----CC---EeccccccchhHHHHHHcCC
Confidence 344445543 2 345 678999999988866511 1 22 4455566 787888888899
Q ss_pred eEEEecCCC----------CCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc-----------hhhh-------
Q psy852 529 RLKILEPDD----------KNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS-----------CYRK------- 575 (891)
Q Consensus 529 ~v~~Vp~d~----------~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~-----------c~~~------- 575 (891)
+++.+|+++ ++.+|+++|+++|++.+. ..+.++++. ..|.+. |.++
T Consensus 136 ~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~-~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~D 214 (456)
T 2ez2_A 136 VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA-ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYD 214 (456)
T ss_dssp EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEecccccccccccccccCCCCHHHHHHHHHhccc-cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 999998863 278999999999987532 122233322 345432 3321
Q ss_pred -----------------hcCC----------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCC
Q psy852 576 -----------------SQGI----------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGA 628 (891)
Q Consensus 576 -----------------ldGi----------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~ 628 (891)
..|. ...|.+++++||+++.| ..|+++.++++...........+.....
T Consensus 215 e~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~--- 290 (456)
T 2ez2_A 215 ATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPS--- 290 (456)
T ss_dssp CTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTT---
T ss_pred ccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCccc---
Confidence 1222 23689999999998866 4577776555433221111111100000
Q ss_pred ccccCCcccccccccchHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecC--Ccchh
Q psy852 629 IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGL-QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRS--ENNLI 705 (891)
Q Consensus 629 ~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~-~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~--~~~~~ 705 (891)
. .+.. ++ ++. .+++..+ +.+ .+.+++..++++++.+.|++. +++++.+.....+.+.+.. .+ ..
T Consensus 291 --~--~~~~-~~---~~~-a~a~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~~~-~~ 357 (456)
T 2ez2_A 291 --Y--GGLA-GR---DME-AMAIGLR--EAMQYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCEH-LT 357 (456)
T ss_dssp --T--TTCC-HH---HHH-HHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTTT-SC
T ss_pred --c--cCcc-hh---HHH-HHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhcCC-CC
Confidence 0 0010 11 111 0011111 223 466677788889999999884 7777665555677777631 11 01
Q ss_pred hhhh-HHHHHHHH-HhCCcEEEe-eccc------------cCCeEE-EEecCC-CCHHHHHHHHHHHHHHHH
Q psy852 706 ADQN-NRKLLEDI-NASGRLHMV-PASQ------------EQNDEV-FELQER-KRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 706 ~d~l-n~~L~~~L-~~~G~~~~s-~s~~------------~g~~~l-~sv~~~-tT~edId~li~~L~ei~~ 760 (891)
.+.+ .+.+...| .+.|+..+. +... .+...+ ++++.. ++++||+++++.|++++.
T Consensus 358 ~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~ 429 (456)
T 2ez2_A 358 QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ 429 (456)
T ss_dssp GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 1233 56667777 577886433 2211 123566 988776 899999999999998763
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.5e-07 Score=99.17 Aligned_cols=243 Identities=9% Similarity=0.019 Sum_probs=145.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH---HHcCceEEEecCCCCCCcCHHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---MMAFVRLKILEPDDKNSLRGAT 545 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa---~l~gv~v~~Vp~d~~G~mD~~~ 545 (891)
.+||++++..++.++...- ++.+|+++...|++..... .+.|.+++.+|. +++.+|+++
T Consensus 69 ~~~g~~a~~~a~~~~~~~g-----------------~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~ 130 (359)
T 3pj0_A 69 FPSGTMAQQIALRIWADRK-----------------ENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDD 130 (359)
T ss_dssp ESCHHHHHHHHHHHHHHHH-----------------TCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHH
T ss_pred eCCHHHHHHHHHHHHHhcC-----------------CCcEEEEeccceeeehhcchHHHhcCceEEecCC-cCCCcCHHH
Confidence 4678899988877754321 2335778888888775432 456889999988 578999999
Q ss_pred HHHHHHhhhhcCCccEEEEec---C-Cccc-----------hhhh-----hcC-----------C------CCccEEEEc
Q psy852 546 LRQVMQQDETMGYIPFFVSTT---L-GTTS-----------CYRK-----SQG-----------I------EYADSFNVN 588 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vvat---a-GTT~-----------c~~~-----ldG-----------i------~~aDSIs~d 588 (891)
|+++ .+ ....+++++. . |++. |.++ +|+ . ..+|.++++
T Consensus 131 l~~~-~~----~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s 205 (359)
T 3pj0_A 131 IKSL-RE----PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVS 205 (359)
T ss_dssp HHTC-SS----CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEE
T ss_pred HHhc-cC----CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEe
Confidence 9987 22 2223444332 2 4442 3331 232 1 346999999
Q ss_pred CcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHH
Q psy852 589 VNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668 (891)
Q Consensus 589 ~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~ 668 (891)
+||++++|.| |+ ++.+++.+.........+ .. +.. +-...+...+..++. ..+.+++..+
T Consensus 206 ~sK~~~~~~g-g~-~~~~~~l~~~~~~~~~~~--~~----------~~~-~~~~~~~a~~~~l~~-----~~~~~~~~~~ 265 (359)
T 3pj0_A 206 FYKGIGGIAG-AI-LAGNDDFVQEAKIWKRRY--GG----------DLI-SLYPYILSADYYFEK-----RIGKMAEYFE 265 (359)
T ss_dssp SSSTTCCSSC-EE-EEECHHHHHHHHHHHHHT--TC----------CCS-CCHHHHHHHHHHHHH-----HGGGHHHHHH
T ss_pred ccccCCCcce-EE-EECCHHHHHHHHHHHHHh--CC----------Ccc-hhHHHHHHHHHHHHH-----HHHHhHHHHH
Confidence 9999999966 44 444443332211100000 00 000 000011111122222 1245666788
Q ss_pred HHHHHHHHhccCCCcEEe-CCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc--ccCCeEE-EEecC---
Q psy852 669 LAKLFEGKVRRDPRFEIS-NDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS--QEQNDEV-FELQE--- 741 (891)
Q Consensus 669 lA~~L~~~L~~~~~~eil-~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~--~~g~~~l-~sv~~--- 741 (891)
+++++.+.|++++++++. .++..+.+.+++.... ....+.+.+.|.+.|+.+..+.. ..+...+ ++++.
T Consensus 266 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~ 341 (359)
T 3pj0_A 266 AAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSA----DEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFA 341 (359)
T ss_dssp HHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCH----HHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGG
T ss_pred HHHHHHHHHhhCCCceeeccCCcceEEEEEecCcc----chhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccc
Confidence 899999999999999985 5667888888886431 12356788889999987543322 2233455 76653
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 742 ~tT~edId~li~~L~ei 758 (891)
..+.+++++.++.|.+.
T Consensus 342 ~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 342 EIPAKNLELVFRCLEKE 358 (359)
T ss_dssp GSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 35788888888877653
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.5e-07 Score=99.55 Aligned_cols=247 Identities=11% Similarity=0.056 Sum_probs=158.6
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++.+...+. +++ +++|+++++..++.+... +.-.|+++.-.|.+...++...|.++
T Consensus 73 ~la~~~~~~~~-~v~--~~~g~~~a~~~~~~~l~~-------------------~gd~vl~~~~~~~~~~~~~~~~g~~~ 130 (365)
T 3get_A 73 TLAQKYKVQNE-NII--IGAGSDQVIEFAIHSKLN-------------------SKNAFLQAGVTFAMYEIYAKQCGAKC 130 (365)
T ss_dssp HHHHHHTCCGG-GEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEECSSCCTHHHHHHHHHTCEE
T ss_pred HHHHHhCCCcc-eEE--ECCCHHHHHHHHHHHHhC-------------------CCCEEEEeCCChHHHHHHHHHcCCEE
Confidence 34444443223 556 788999999887765311 12247788889999999998889999
Q ss_pred EEecC-CCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhh----hh-----------cC--
Q psy852 531 KILEP-DDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYR----KS-----------QG-- 578 (891)
Q Consensus 531 ~~Vp~-d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~----~l-----------dG-- 578 (891)
+.+|. ++++ +|+++|++++++++ ..++++ +..|+.. |.+ .+ .+
T Consensus 131 ~~v~~~~~~~-~d~~~l~~~l~~~~----~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~ 205 (365)
T 3get_A 131 YKTQSITHNL-DEFKKLYETHKDEI----KLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKK 205 (365)
T ss_dssp EECSSSSCCH-HHHHHHHHHTTTTE----EEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGG
T ss_pred EEEecCCCCC-CCHHHHHHHhCCCC----CEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcc
Confidence 99998 7778 99999999997432 122332 2245543 211 01 11
Q ss_pred -C--------CCccEEEEcCcccCC-cccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHH
Q psy852 579 -I--------EYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647 (891)
Q Consensus 579 -i--------~~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l 647 (891)
. ...+-+..++||+++ ....+|+++. +++.. +.+. ....| + ...+.+
T Consensus 206 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~-~~~~~~~~~~--------------~------~~~~~~ 263 (365)
T 3get_A 206 HLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-NANII-SAFYKLRAPF--------------N------VSNLAL 263 (365)
T ss_dssp CCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHH-HHHHHHSCTT--------------C------SCHHHH
T ss_pred cccHhHHhccCCCEEEEeecchHhcCcchheEEEEc-CHHHH-HHHHHhcCCC--------------C------cCHHHH
Confidence 1 122466779999987 4467899888 33322 2221 11111 1 112233
Q ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe
Q psy852 648 WFVIRTYG-LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV 726 (891)
Q Consensus 648 W~~L~~lG-~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s 726 (891)
++....+. .+.+.+..++..++++++.+.|++. ++++. ++..+.+++++++. ....+.+.|.++|+.+..
T Consensus 264 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~ 334 (365)
T 3get_A 264 KAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKII-DSYTNFITYFFDEK-------NSTDLSEKLLKKGIIIRN 334 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECSSS-------CHHHHHHHHHTTTEECEE
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCCC-------CHHHHHHHHHHCCEEEEE
Confidence 33333332 2567788888899999999999987 78775 34556678887532 456788889999987655
Q ss_pred eccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 727 PASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 727 ~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.... ...+ ++++ +++|+++++++|+++.
T Consensus 335 g~~~~-~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 335 LKSYG-LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CGGGT-CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CccCC-CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 54443 4566 8876 8999999999998764
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=106.80 Aligned_cols=250 Identities=14% Similarity=0.035 Sum_probs=155.7
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---- 523 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa---- 523 (891)
+.+.+++.+... +++ +++||++++..++.++.. +.-.|+++...|.+....+
T Consensus 71 l~~~la~~~g~~---~~~--~~~sGt~A~~~al~~~~~-------------------~gd~Vi~~~~~y~~~~~~~~~~~ 126 (392)
T 3qhx_A 71 LEAALAAVEDAA---FGR--AFSSGMAAADCALRAMLR-------------------PGDHVVIPDDAYGGTFRLIDKVF 126 (392)
T ss_dssp HHHHHHHHTTCS---EEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEETTCCHHHHHHHHHTG
T ss_pred HHHHHHHHhCCC---cEE--EECCHHHHHHHHHHHHhC-------------------CCCEEEEeCCCcchHHHHHHHHH
Confidence 334455555432 344 567889999988876411 1225888888988777666
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC--------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI-------- 579 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi-------- 579 (891)
...|++++.+|.+ |+++|+++|+++++ .+++. +..|... |+++ +|.+
T Consensus 127 ~~~g~~~~~v~~~-----d~~~l~~~i~~~~~----~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~ 197 (392)
T 3qhx_A 127 TGWNVEYTPVALA-----DLDAVRAAIRPTTR----LIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQ 197 (392)
T ss_dssp GGGTCEEEEECTT-----CHHHHHHHCCTTEE----EEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCC
T ss_pred HhcCcEEEEeCCC-----CHHHHHHhhCCCCe----EEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 3457899999886 89999999976321 22222 2344443 4432 2321
Q ss_pred ---CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH
Q psy852 580 ---EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l 654 (891)
-.+|.++.+.||+++.|.+ .|+++.+++..... +... . ...+.....+..|..++
T Consensus 198 ~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~-l~~~----~-------------~~~g~~~~~~~~~~~~~-- 257 (392)
T 3qhx_A 198 PLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQS-FAFL----Q-------------NGAGAVPGPFDAYLTMR-- 257 (392)
T ss_dssp GGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHH-HHHH----H-------------HHHCCCCCHHHHHHHHH--
T ss_pred hHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHH-HHHH----H-------------HhcCCCCCHHHHHHHHh--
Confidence 2479999999999997753 78877775433221 1100 0 00011223455666655
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-----------------eeEEEEEecCCcchhhhhhHHHHHHHH
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-----------------LGLVCFRLRSENNLIADQNNRKLLEDI 717 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-----------------~~iV~Fr~~~~~~~~~d~ln~~L~~~L 717 (891)
+.+.+...+++..++++++.+.|++.+.+.-+..|. .++++|.+++. ....+.+.+.|
T Consensus 258 ~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~~~~l 332 (392)
T 3qhx_A 258 GLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-----RTAAEQLCAKT 332 (392)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-----HHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-----HHHHHHHHHhC
Confidence 455577888889999999999999988875442221 46899999753 23556777777
Q ss_pred HhCCcEEEeecc---------c-----------cCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 718 NASGRLHMVPAS---------Q-----------EQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 718 ~~~G~~~~s~s~---------~-----------~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
...|+....+.. . .....+ +|++..+++++|+.+.++|
T Consensus 333 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 333 NIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp SSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 665544222211 0 124567 9999888888888777665
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=113.05 Aligned_cols=80 Identities=15% Similarity=0.126 Sum_probs=64.8
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.++...+ ...|.+++.|+++ | ++|++++++. +.+|+++..+|.+|.+.|+++|++
T Consensus 95 ~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d-~~l~~~i~~~------t~lv~~~~~~nptG~~~~l~~i~~ 162 (393)
T 1n8p_A 95 HAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL-----L-NDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVAD 162 (393)
T ss_dssp EEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH-----H-HHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC-----h-HHHHHhcccC------ceEEEEECCCCCcceecCHHHHHH
Confidence 3777778888776654 2346788899876 7 8888887643 458888999999999999999999
Q ss_pred HHHHc----CCceeeecccc
Q psy852 220 VAKEF----DVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~----~~~lHvDaA~G 235 (891)
+|+++ |+++|+|+||+
T Consensus 163 la~~~~~~~~~~livD~a~~ 182 (393)
T 1n8p_A 163 LIKKHAAGQDVILVVDNTFL 182 (393)
T ss_dssp HHHHHTTTTTCEEEEECTTT
T ss_pred HHHHhCCCCCCEEEEeCCcc
Confidence 99999 99999999883
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.75 E-value=9.3e-07 Score=98.55 Aligned_cols=262 Identities=7% Similarity=-0.029 Sum_probs=149.7
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH---HHHHc-
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK---AAMMA- 526 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K---aa~l~- 526 (891)
.+++.+...+ -+|+ +++| ++++..++.+... +.-.|+++..+|.+... .....
T Consensus 79 ~la~~~g~~~-~~i~--~~sG-t~a~~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~~~~g 135 (417)
T 3n0l_A 79 RCKKLFNCKF-ANVQ--PNSG-SQANQGVYAALIN-------------------PGDKILGMDLSHGGHLTHGAKVSSSG 135 (417)
T ss_dssp HHHHHHTCSE-EECC--CSSH-HHHHHHHHHHHSC-------------------TTCEEEEECC----------------
T ss_pred HHHHHhCCCC-cceE--eccH-HHHHHHHHHHhcC-------------------CCCEEEecccccccccchhhhhhhhc
Confidence 3444444322 2354 4555 8998888766411 12247777777876654 22232
Q ss_pred -CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE-ecCCccc--------hhhh-----hcC-------------
Q psy852 527 -FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS-TTLGTTS--------CYRK-----SQG------------- 578 (891)
Q Consensus 527 -gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv-ataGTT~--------c~~~-----ldG------------- 578 (891)
++.++.+++++++.+|+++|+++|++.. ...++++ .+.|+.. |.++ +|.
T Consensus 136 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~---~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~ 212 (417)
T 3n0l_A 136 KMYESCFYGVELDGRIDYEKVREIAKKEK---PKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHP 212 (417)
T ss_dssp CCSEEEEECCCTTSSCCHHHHHHHHHHHC---CSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC
T ss_pred ceeeeEeccCCCCCCcCHHHHHHHHHhcC---CeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCC
Confidence 3467778888889999999999998431 1122222 2346554 4431 222
Q ss_pred --CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHH
Q psy852 579 --IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYG 655 (891)
Q Consensus 579 --i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG 655 (891)
+..+|.++.++||++.+|.+ |+++.+++......-.....+. .++-. .....++.++....
T Consensus 213 ~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~aa~~~a~~~~~ 276 (417)
T 3n0l_A 213 SPFPYAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFPGI---------------QGGPLMHVIAAKAVGFKFNL 276 (417)
T ss_dssp CCTTTCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTTTT---------------CSSCCHHHHHHHHHHHHHHT
T ss_pred CccccceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCCcc---------------cCCcHHHHHHHHHHHHHHHH
Confidence 23469999999999988874 7877765433221111100000 00111 11233445555545
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-----
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS----- 729 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~----- 729 (891)
..++.+..++..++++++.+.|++ .++++... ...+.+.+.+.+. ......+.+.|.+.|+.......
T Consensus 277 ~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~v~~~~~~~~~~ 350 (417)
T 3n0l_A 277 SDEWKVYAKQVRTNAQVLANVLMD-RKFKLVSDGTDNHLVLMSFLDR-----EFSGKDADLALGNAGITANKNTVPGEIR 350 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECTTS-----SSCHHHHHHHHHHTTEECEECCCTTCCS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCceEEEEEcccC-----CCCHHHHHHHHHHcCeEEeccccCCCCc
Confidence 577888899999999999999988 67887652 3456777777543 12345677788888987432211
Q ss_pred -ccCCeEE-EEec----CCCCHHHHHHHHHHHHHHHH
Q psy852 730 -QEQNDEV-FELQ----ERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 730 -~~g~~~l-~sv~----~~tT~edId~li~~L~ei~~ 760 (891)
......+ +++. ...+++||+++++.|++++.
T Consensus 351 ~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~ 387 (417)
T 3n0l_A 351 SPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILD 387 (417)
T ss_dssp CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 0112234 6643 24789999999999998763
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.7e-07 Score=101.96 Aligned_cols=254 Identities=9% Similarity=-0.001 Sum_probs=154.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH-HcCceEEEecCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-MAFVRLKILEPDD--KN 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~-l~gv~v~~Vp~d~--~G 539 (891)
.|+ +++|+++++..++.+... +.-.|+++.-+|.+...++. ..|++++.+|.++ ++
T Consensus 110 ~i~--~~~G~~~ai~~~~~~~~~-------------------~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~ 168 (428)
T 1iay_A 110 RVV--MAGGATGANETIIFCLAD-------------------PGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNF 168 (428)
T ss_dssp SCE--EEEHHHHHHHHHHHHHCC-------------------TTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTT
T ss_pred hEE--EccChHHHHHHHHHHhCC-------------------CCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCC
Confidence 455 678889999888776431 11247777788888777553 6788999999864 45
Q ss_pred CcCHHHHHHHHHhhhhcCC-ccEEEEec----CCccc-----------hhhh--------------hcCC---------C
Q psy852 540 SLRGATLRQVMQQDETMGY-IPFFVSTT----LGTTS-----------CYRK--------------SQGI---------E 580 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~-ip~~Vvat----aGTT~-----------c~~~--------------ldGi---------~ 580 (891)
.+|+++|+++|++....+. +-++++.+ .|++. |.++ ..+- .
T Consensus 169 ~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~ 248 (428)
T 1iay_A 169 KITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILD 248 (428)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcc
Confidence 7999999999986433332 22222222 45443 3221 1110 1
Q ss_pred C-------cc--EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHH
Q psy852 581 Y-------AD--SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV 650 (891)
Q Consensus 581 ~-------aD--SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~ 650 (891)
. .| -+..+.||+++.| ..+|+++..++..+. .+.....+ ++ ...+.+.+.
T Consensus 249 ~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~-~~~~~~~~-------------~~------~~~~~~~a~ 308 (428)
T 1iay_A 249 EQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVN-CARKMSSF-------------GL------VSTQTQYFL 308 (428)
T ss_dssp SGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHH-HHHHHHTT-------------SC------CCHHHHHHH
T ss_pred ccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHH-HHHHHHhc-------------cc------CCHHHHHHH
Confidence 1 47 5688999999755 457999886554332 22110000 00 012223333
Q ss_pred HHHHHH-----hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhC-CcEE
Q psy852 651 IRTYGL-----SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINAS-GRLH 724 (891)
Q Consensus 651 L~~lG~-----~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~ 724 (891)
...+.. +.+++..++..+++++|.+.|++. ++++..+...+.+++++.+.....-......+.+.|.++ |+.+
T Consensus 309 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v 387 (428)
T 1iay_A 309 AAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNV 387 (428)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEEC
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEE
Confidence 333322 245667777788999999999887 677654435567788875321000002345788888876 9875
Q ss_pred Eeecccc--CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 725 MVPASQE--QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 725 ~s~s~~~--g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+.... +..++ ++++ .+++++++++++.|++++
T Consensus 388 ~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l 424 (428)
T 1iay_A 388 SPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFV 424 (428)
T ss_dssp EEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHH
T ss_pred eCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHH
Confidence 5444332 23566 9887 579999999999998775
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.4e-08 Score=110.29 Aligned_cols=265 Identities=7% Similarity=0.012 Sum_probs=158.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-CCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G~m 541 (891)
+|+ +++|+++++..++.+... .. .| .+..|+++.-.|.+...++...|.+++.+|.+++ +.+
T Consensus 107 ~i~--~t~g~t~al~~~~~~l~~-----~~-------~g---d~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 169 (437)
T 3g0t_A 107 ACV--PTVGSMQGCFVSFLVANR-----TH-------KN---REYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEK 169 (437)
T ss_dssp GEE--EESHHHHHHHHHHHHHTT-----SC-------TT---CSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTH
T ss_pred cEE--EeCCHHHHHHHHHHHHhc-----CC-------CC---CccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCcc
Confidence 566 788999999888776530 00 01 1114778888999999999888999999998644 479
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcC------------C-----------
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQG------------I----------- 579 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldG------------i----------- 579 (891)
|+++|+++|+.. +...++++ +..|++. |.++ +|. +
T Consensus 170 d~~~l~~~l~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 246 (437)
T 3g0t_A 170 LREKLESYLQTG---QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVA 246 (437)
T ss_dssp HHHHHHHHHTTT---CCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGG
T ss_pred CHHHHHHHHhcC---CceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccC
Confidence 999999999432 11122232 2345543 3321 111 1
Q ss_pred --CCccEEEEcCcccCC-cccccEEEEEeCCccchhhhc-cCCCccccCCCCCcc-ccCCcccccccccchHHHHHHHHH
Q psy852 580 --EYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAID-YRHWGIPLSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~-~~~~ti~~SRr~~aL~lW~~L~~l 654 (891)
...+.+..+.||+++ ....+|+++.+++ .+...+. ....+..... ... +........-....+.++++...+
T Consensus 247 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~l 323 (437)
T 3g0t_A 247 NYTDNYILALSSSKAFSYAGQRIGVLMISGK-LYEREYPDLEESFGRLRF--GEALSSSALYALSSGATHSAQWGMAAML 323 (437)
T ss_dssp GTCSCEEEEEESTTTTSCGGGCCEEEEECHH-HHHCBCGGGHHHHSCSBH--HHHHHTTHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCccCCCCccceeEEEEECHH-Hhhhhhhcccccccccch--hHHHHHHHHhhhcCCCCHHHHHHHHHHH
Confidence 223366789999997 4466899988643 1110100 0000000000 000 000000000011234445555555
Q ss_pred HHhh-----HHHHHHHHHHHHHHHHHHhccCCCcEEe------CC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 655 GLSG-----LQKYIRRHCELAKLFEGKVRRDPRFEIS------ND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 655 G~~G-----~~~~i~~~~~lA~~L~~~L~~~~~~eil------~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
.... +.+..++..++++++.+.|++. ++++. .+ .....+++++.+. ....+.+.|.++|+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~gi 395 (437)
T 3g0t_A 324 KACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM-------DSSKLIEKFVRYGM 395 (437)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC-------CHHHHHHHHHHTTE
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC-------CHHHHHHHHHHcCe
Confidence 4332 7888889999999999999998 88887 34 4556778888632 35678889998998
Q ss_pred EEEeeccccCC--eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 723 LHMVPASQEQN--DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 723 ~~~s~s~~~g~--~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+..+...... ..+ ++++ ..+++||+++++.|++++
T Consensus 396 ~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~~ 434 (437)
T 3g0t_A 396 CAITLKTTGSKRNEAMRICTS-LLPESQFPDLEKRLQMLN 434 (437)
T ss_dssp ECEESTTTTCCCTTCEEEECS-SSCGGGHHHHHHHHHHHH
T ss_pred EEeeccccCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHH
Confidence 75544332211 446 9888 449999999999998875
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=9.2e-08 Score=107.20 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHhcCCC-CCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q psy852 29 SYPSVLADMLSDAIGCI-GFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQ 107 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~-~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~ 107 (891)
..|.+...+...+-... ...|.......++...+.+++++.+|++.... +.+ .
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~------------~~i--------------~ 95 (422)
T 3fvs_A 42 PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPL------------RNV--------------L 95 (422)
T ss_dssp CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHH------------HHE--------------E
T ss_pred CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCC------------CcE--------------E
Confidence 34555555444433322 12222223456889999999999999763210 001 1
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC----CC--------
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD----KN-------- 175 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~----~g-------- 175 (891)
+++||+...+..+..+ . . +.-.|++..-+|.+....+...+.+++.++.+. +|
T Consensus 96 ~~~g~~~a~~~~~~~~-~-~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~ 160 (422)
T 3fvs_A 96 VTVGGYGALFTAFQAL-V-D-------------EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNW 160 (422)
T ss_dssp EESHHHHHHHHHHHHH-C-C-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGS
T ss_pred EECChHHHHHHHHHHH-c-C-------------CCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCC
Confidence 3567764333222222 1 1 112367777788888888877788999999886 44
Q ss_pred cccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHHHHHHcCCceeeeccccCCc
Q psy852 176 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 176 ~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
.+|+++|++.+++. +.+|+++..+|.+|.+- ++++|+++|+++|+++++|.+|+++.
T Consensus 161 ~~d~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 220 (422)
T 3fvs_A 161 QLDPMELAGKFTSR------TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMV 220 (422)
T ss_dssp BCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred CCCHHHHHhhcCCC------ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhc
Confidence 79999999988653 34677778899999998 59999999999999999999996543
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.4e-08 Score=109.23 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=71.5
Q ss_pred EEEecC-CCChHHHHHHHH----------cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeec----ccCcc
Q psy852 144 MAYCSK-EAHSCVEKAAMM----------AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL----GTTSC 208 (891)
Q Consensus 144 ~v~~S~-~~H~Sv~kaa~~----------~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~----Gtt~~ 208 (891)
.|+++. ..|.+....+.+ .+.+++.++.+++|.+|+++|++++++. +.+|+++. .++.+
T Consensus 109 ~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~------tk~V~i~~sp~np~~~~ 182 (431)
T 3ht4_A 109 ELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSN------TKMIGIQRSKGYATRPS 182 (431)
T ss_dssp EEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCTT------EEEEEEECSCTTSSSCC
T ss_pred EEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCC------CeEEEEECCCCCCCCCc
Confidence 366665 778887766532 4679999999999999999999998754 34666665 78889
Q ss_pred ccccCHHHHHHHHHH--cCCceeeeccccCC
Q psy852 209 CSFDNLAEIGPVAKE--FDVWLHVDGAYAGS 237 (891)
Q Consensus 209 GavDpl~~I~~i~~~--~~~~lHvDaA~GG~ 237 (891)
|.++|+++|+++|++ +|+++++|.||+.+
T Consensus 183 ~~~~~l~~i~~la~~~~~~~~livDea~~~~ 213 (431)
T 3ht4_A 183 FTISQIKEMIAFVKEIKPDVVVFVDNCYGEF 213 (431)
T ss_dssp CCHHHHHHHHHHHHHHCTTCEEEEECTTCTT
T ss_pred CCHHHHHHHHHHHHhhCCCCEEEEeCCChhh
Confidence 999999999999999 99999999988543
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=98.74 E-value=7.1e-07 Score=103.65 Aligned_cols=270 Identities=9% Similarity=0.001 Sum_probs=147.3
Q ss_pred HHHHhhccCCc-cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchH------HHHH--
Q psy852 451 LFEGKVRRDPR-FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHS------CVEK-- 521 (891)
Q Consensus 451 ~l~~~L~~~~~-~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~------Sv~K-- 521 (891)
++++.+...+. +.+.. ++++|+++|+.++.+.-. +.-.|+++..+|. ++..
T Consensus 108 ~~a~l~g~~~~~~~~~v-~~~sGt~An~~al~al~~-------------------pGD~Vl~~~~~h~g~l~h~~~~~~~ 167 (490)
T 2a7v_A 108 RALEAFDLDPAQWGVNV-QPYSGSPANLAVYTALLQ-------------------PHDRIMGLDLPDGGHLTHGYMSDVK 167 (490)
T ss_dssp HHHHHTTCCTTTEEEEC-CCSSHHHHHHHHHHHHCC-------------------SCEECCC------------------
T ss_pred HHHHHcCCCcccCceEE-eCCchHHHHHHHHHHHcC-------------------CCCEecccCccccccccchhhhcch
Confidence 55555554332 21111 345789999988876311 1123555554443 3221
Q ss_pred HHHHcCce--EEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEe-cCCccc--------hhh-----hhcC------
Q psy852 522 AAMMAFVR--LKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVST-TLGTTS--------CYR-----KSQG------ 578 (891)
Q Consensus 522 aa~l~gv~--v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-taGTT~--------c~~-----~ldG------ 578 (891)
.+.+.+.. ++.+++| ++|.+|+++|++++.+... ..+++.. ..|+.. |++ ++|+
T Consensus 168 ~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~---klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~gl 244 (490)
T 2a7v_A 168 RISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRP---RLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGL 244 (490)
T ss_dssp -------------CCBCTTTCSBCHHHHHHHHHHHCC---SEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHH
T ss_pred hHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCC---cEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEcccccccc
Confidence 22344443 3445555 5799999999999975321 1122222 234332 333 1222
Q ss_pred ---------CCCccEEEEcCcccCCcccccEEEEEeCCc-------------cchhhhccCCCccccCCCCCccccCCcc
Q psy852 579 ---------IEYADSFNVNVNKWLLTAFDSSCLWVADRY-------------KLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 579 ---------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~-------------~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
++.+|.+++++||++.+|.| |++++++.. .+.+.+.. .+. .+.
T Consensus 245 v~~g~~~~~~~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~~-----------~g~ 309 (490)
T 2a7v_A 245 VAAKVIPSPFKHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINF---AVF-----------PSL 309 (490)
T ss_dssp HHTTSSCCGGGTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHHH---HHT-----------TTT
T ss_pred ccCCcCCCCCCCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHHHH---Hhc-----------ccC
Confidence 24689999999999999987 888888751 11111110 000 011
Q ss_pred ccccccc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHH
Q psy852 637 PLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLL 714 (891)
Q Consensus 637 ~~SRr~~-aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~ 714 (891)
+++-... ...+..+++..-.+.+.+..++..+++++|.+.|++. +++++.. .+.+++.+.+.+. ......+.
T Consensus 310 qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~-----g~~~~~~~ 383 (490)
T 2a7v_A 310 QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPK-----GLDGARAE 383 (490)
T ss_dssp CCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTT-----TCCHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCC-----CCCHHHHH
Confidence 1121111 1223334444444567888899999999999999985 8998753 4567888887643 12345677
Q ss_pred HHHHhCCcEEEeecccc-----CCeEE-EE----ecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy852 715 EDINASGRLHMVPASQE-----QNDEV-FE----LQERKRKDDLAYKRSFFVRMLGLVCF 764 (891)
Q Consensus 715 ~~L~~~G~~~~s~s~~~-----g~~~l-~s----v~~~tT~edId~li~~L~ei~~~~~~ 764 (891)
+.|.+.|+.....+... ...-+ ++ .+...+++|++++++.|.+++....+
T Consensus 384 ~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~~~ 443 (490)
T 2a7v_A 384 RVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLE 443 (490)
T ss_dssp HHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 88888898744321111 12234 64 35578999999999999998865443
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.9e-07 Score=99.63 Aligned_cols=237 Identities=10% Similarity=0.039 Sum_probs=151.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+... . ++-.|+++.-+|.+...++...|.+++.+|.++++.+|
T Consensus 77 ~v~--~~~G~~~ai~~~~~~~~~----~--------------g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d 136 (356)
T 1fg7_A 77 QVL--VSRGADEGIELLIRAFCE----P--------------GKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLD 136 (356)
T ss_dssp GEE--EESHHHHHHHHHHHHHCC----T--------------TTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCC
T ss_pred HEE--EcCCHHHHHHHHHHHHhC----C--------------CCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCC
Confidence 455 678999999887766421 0 11247777888888888888889999999998888999
Q ss_pred HHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhh----hhcC----------C------CCccEEEEc
Q psy852 543 GATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYR----KSQG----------I------EYADSFNVN 588 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~----~ldG----------i------~~aDSIs~d 588 (891)
+++|+++++ ++ ..++++. ..|+.. |.. .+|. + ...+-+..+
T Consensus 137 ~~~l~~~i~-~~----~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s 211 (356)
T 1fg7_A 137 LQGISDKLD-GV----KVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT 211 (356)
T ss_dssp HHHHHTSCT-TE----EEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred HHHHHHHhc-CC----CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEec
Confidence 999998885 21 1233332 245443 211 0111 0 123566779
Q ss_pred CcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh---HHHHH
Q psy852 589 VNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG---LQKYI 663 (891)
Q Consensus 589 ~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G---~~~~i 663 (891)
.||+++.| ..+|+++.++ +.+ +.+. ....| + ...+.++++...+...+ +++..
T Consensus 212 ~sK~~g~~G~r~G~~~~~~-~~~-~~l~~~~~~~--------------~------~~~~~~~a~~~~l~~~~~~~~~~~~ 269 (356)
T 1fg7_A 212 LSKAFALAGLRCGFTLANE-EVI-NLLMKVIAPY--------------P------LSTPVADIAAQALSPQGIVAMRERV 269 (356)
T ss_dssp SSSTTCCGGGCCEEEEECH-HHH-HHHHHHSCSS--------------C------SCHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred chHhhcCchhhhEEEEeCH-HHH-HHHHHhcCCC--------------C------CCHHHHHHHHHHhcCccHHHHHHHH
Confidence 99998744 4579888843 222 2221 11111 1 12344555555554444 67777
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe-eccccCCeEE-EEecC
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV-PASQEQNDEV-FELQE 741 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s-~s~~~g~~~l-~sv~~ 741 (891)
++..++++++.+.|++.+++....+...+.+.+++. ...++.+.|.+.|+.+.. +.......++ ++++
T Consensus 270 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~- 339 (356)
T 1fg7_A 270 AQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK---------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG- 339 (356)
T ss_dssp HHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET---------THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC-
T ss_pred HHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC---------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC-
Confidence 888899999999999887654444556677788874 245788888888987554 3322223456 8876
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 742 ~tT~edId~li~~L~ei 758 (891)
+++|+++++++|+++
T Consensus 340 --~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 340 --TREESQRVIDALRAE 354 (356)
T ss_dssp --CHHHHHHHHHHHHTC
T ss_pred --CHHHHHHHHHHHHhh
Confidence 689999999988753
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.6e-07 Score=101.88 Aligned_cols=248 Identities=8% Similarity=-0.014 Sum_probs=143.4
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH-H--HHc--CceEEEecCCCCCCcCHH
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA-A--MMA--FVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka-a--~l~--gv~v~~Vp~d~~G~mD~~ 544 (891)
++|++++..++.+... +.-.|+++...|.+.... . .+. ++..+.+|.+.++.+|++
T Consensus 99 ~sGs~a~~~a~~~~~~-------------------~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 159 (420)
T 3gbx_A 99 HSGSQANFAVYTALLQ-------------------PGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYD 159 (420)
T ss_dssp SSHHHHHHHHHHHHCC-------------------TTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHH
T ss_pred cCcHHHHHHHHHHhcC-------------------CCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHH
Confidence 3458888887655311 123577778888774422 2 222 345666778888999999
Q ss_pred HHHHHHHhhhhcCCccEEE-EecCCccc--------hhhh-----hcC---------------CCCccEEEEcCcccCCc
Q psy852 545 TLRQVMQQDETMGYIPFFV-STTLGTTS--------CYRK-----SQG---------------IEYADSFNVNVNKWLLT 595 (891)
Q Consensus 545 ~Le~aI~~d~~~g~ip~~V-vataGTT~--------c~~~-----ldG---------------i~~aDSIs~d~HK~L~~ 595 (891)
+|+++|++.. ...+++ ..+.|+.. |.++ +|. ++.+|.++.++||++++
T Consensus 160 ~l~~~i~~~~---~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g 236 (420)
T 3gbx_A 160 EMAKLAKEHK---PKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG 236 (420)
T ss_dssp HHHHHHHHHC---CSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCS
T ss_pred HHHHHHHhcC---CeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCC
Confidence 9999998741 112233 22334433 4431 111 34478999999999988
Q ss_pred ccccEEEEEeCC-ccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 596 AFDSSCLWVADR-YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 596 P~g~G~llvR~~-~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
|.| |+++.++. ..+.+.+.. +.... ..+ ..-......++.++.....+++.+..++..++++++.
T Consensus 237 ~~g-g~~~~~~~~~~~~~~~~~---~~~~~--------~~~--~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 302 (420)
T 3gbx_A 237 PRG-GLILAKGGDEELYKKLNS---AVFPS--------AQG--GPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMV 302 (420)
T ss_dssp CSC-EEEEESSCCHHHHHHHHH---HHC------------C--CCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCc-eEEEEcCCcHHHHHHhhh---hcCCC--------CCC--CcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 876 77766652 112222110 00000 000 0001112234445544445678888999999999999
Q ss_pred HHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee------ccccCCeEE-EEecC----C
Q psy852 675 GKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP------ASQEQNDEV-FELQE----R 742 (891)
Q Consensus 675 ~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~------s~~~g~~~l-~sv~~----~ 742 (891)
+.|++ .+++++.+ ...+.+.+.+.+. ......+.+.|.+.|+.+... ....+...+ +++.. .
T Consensus 303 ~~L~~-~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~ 376 (420)
T 3gbx_A 303 EVFLN-RGYKVVSGGTENHLFLLDLVDK-----NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRG 376 (420)
T ss_dssp HHHHH-TTCEEGGGSCSSSEEEEECGGG-----TCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTT
T ss_pred HHHHh-cCCeeccCCCCCeEEEEEcCCC-----CCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccC
Confidence 99988 57888753 3566777777542 123456777888889875431 111122235 77543 4
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy852 743 KRKDDLAYKRSFFVRML 759 (891)
Q Consensus 743 tT~edId~li~~L~ei~ 759 (891)
.++++|+++++.|++++
T Consensus 377 ~~~~~i~~~~~~l~~~l 393 (420)
T 3gbx_A 377 FKEAEVKELAGWMCDVL 393 (420)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 67999999999998776
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-07 Score=104.55 Aligned_cols=250 Identities=7% Similarity=-0.008 Sum_probs=155.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+... +.-.|++..-+|.+...++...|.+++.+|.+++| +|
T Consensus 111 ~v~--~t~G~~~al~~~~~~l~~-------------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d 168 (425)
T 1vp4_A 111 NLI--FTVGSQQALDLIGKLFLD-------------------DESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MD 168 (425)
T ss_dssp GEE--EEEHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-EC
T ss_pred cEE--EeccHHHHHHHHHHHhCC-------------------CCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCC-CC
Confidence 455 778999998877765311 11247777788989988888889999999988776 99
Q ss_pred HHHHHHHHHhhhhc--C-CccEE-EEe----cCCccc-----------hhhh-----hc---------CC----------
Q psy852 543 GATLRQVMQQDETM--G-YIPFF-VST----TLGTTS-----------CYRK-----SQ---------GI---------- 579 (891)
Q Consensus 543 ~~~Le~aI~~d~~~--g-~ip~~-Vva----taGTT~-----------c~~~-----ld---------Gi---------- 579 (891)
+++|+++|++..++ + .+-++ ++. ..|++. |.++ +| |-
T Consensus 169 ~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 248 (425)
T 1vp4_A 169 LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG 248 (425)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC
T ss_pred HHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCC
Confidence 99999999863211 0 11122 332 245543 3331 11 10
Q ss_pred CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH---
Q psy852 580 EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL--- 656 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~--- 656 (891)
...+-+..+.+|+++.-..+|+++.+++ +.+.+...... ..++ ...+.++++...+..
T Consensus 249 ~~~~i~~~s~sK~~~~G~r~G~~~~~~~--~~~~l~~~~~~-----------~~~~------~~~~~~~a~~~~l~~~~~ 309 (425)
T 1vp4_A 249 PERVVLLNTFSKVLAPGLRIGMVAGSKE--FIRKIVQAKQS-----------ADLC------SPAITHRLAARYLERYDL 309 (425)
T ss_dssp TTTEEEEEESTTTTCGGGCEEEEECCHH--HHHHHHHHHHH-----------HHSS------CCHHHHHHHHHHHHHSCH
T ss_pred CCCEEEEeccccccccccceEEEeeCHH--HHHHHHHHhhh-----------hcCC------CCHHHHHHHHHHHhcCCH
Confidence 1124557789999993245799988633 22222110000 0011 123445555555543
Q ss_pred -hhHHHHHHHHHHHHHHHHHHhccC-C---CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-
Q psy852 657 -SGLQKYIRRHCELAKLFEGKVRRD-P---RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ- 730 (891)
Q Consensus 657 -~G~~~~i~~~~~lA~~L~~~L~~~-~---~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~- 730 (891)
+.+++..++..++++++.+.|++. + ++++..+...+.++++++.. ....++.+.|.++|+.+..+...
T Consensus 310 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~------~~~~~l~~~l~~~gi~v~~g~~f~ 383 (425)
T 1vp4_A 310 LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEG------FDTWEMFEYAKRKKVFYVPGRVFK 383 (425)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTT------CCTTTTHHHHHHHTEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCC------CCHHHHHHHHHHCCCEEECchhhc
Confidence 345566666678889999999874 5 68877655566888888531 12345777787789876544433
Q ss_pred ---cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 ---EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 ---~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+...+ ++++.. ++++|+++++.|++++.
T Consensus 384 ~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~ 416 (425)
T 1vp4_A 384 VYDEPSPSMRLSFCLP-PDEKIVEGIKRLREVVL 416 (425)
T ss_dssp TTCCCCSEEEEECSSS-CHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHH
Confidence 134567 988764 89999999999998764
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=108.44 Aligned_cols=88 Identities=7% Similarity=0.023 Sum_probs=72.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC------------CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD------------KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~------------~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
.|++..-.|.+...++...|.+++.|++++ ++.+|+++|++++++. +.+|+++..+|.+|.+
T Consensus 144 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~ 217 (447)
T 3b46_A 144 EVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK------TKAVIINTPHNPIGKV 217 (447)
T ss_dssp EEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT------EEEEEEESSCTTTCCC
T ss_pred EEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccC------CeEEEEeCCCCCCCcc
Confidence 367777788888888877788999999865 3589999999988633 3466777889999998
Q ss_pred ---cCHHHHHHHHHHcCCceeeeccccCC
Q psy852 212 ---DNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 212 ---Dpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+++++|+++|+++|+++++|.+|+++
T Consensus 218 ~~~~~l~~i~~l~~~~~~~li~De~~~~~ 246 (447)
T 3b46_A 218 FTREELTTLGNICVKHNVVIISDEVYEHL 246 (447)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred cCHHHHHHHHHHHHHcCcEEEEeccchhc
Confidence 67999999999999999999999653
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.5e-07 Score=101.37 Aligned_cols=277 Identities=9% Similarity=0.051 Sum_probs=148.2
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH-HHcC
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MMAF 527 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-~l~g 527 (891)
.+.+++.+.. + +++ +++||+++|..++.+++...... .|...++- |+++ ..|+....+. ...+
T Consensus 80 ~~~la~~~~~-~--~v~--~t~~gt~A~~~al~~~~~~~~~~---------~G~~~~d~-Ii~~-~~h~~t~~~~~~~~~ 143 (467)
T 2oqx_A 80 AESVKNIFGY-Q--YTI--PTHQGRGAEQIYIPVLIKKREQE---------KGLDRSKM-VAFS-NYFFDTTQGHSQING 143 (467)
T ss_dssp HHHHHHHHCC-S--EEE--EEC--CCSHHHHHHHHHHHHHHH---------HCCCTTTC-EEEE-SSCCHHHHHHHHHTT
T ss_pred HHHHHHHhCc-C--cEE--EcCCcHHHHHHHHHHHhcccccc---------CCCCccce-EEec-ccccccchhhhhccC
Confidence 3445555543 2 345 67899999999999987531111 01000012 4555 5785543333 3444
Q ss_pred ceEEEe------cCC----CCCCcCHHHHHHHHHhhhhcCCccEEEEe---cC-Cccc-----------hhh-----hhc
Q psy852 528 VRLKIL------EPD----DKNSLRGATLRQVMQQDETMGYIPFFVST---TL-GTTS-----------CYR-----KSQ 577 (891)
Q Consensus 528 v~v~~V------p~d----~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---ta-GTT~-----------c~~-----~ld 577 (891)
..+... +.+ .+|.+|+++|+++|++........++++. .. |.+. |.+ +.|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 2oqx_A 144 CTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223 (467)
T ss_dssp CEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 444332 233 45789999999999863100112233332 22 4431 443 234
Q ss_pred -------------------CC----------CCccEEEEcCcccCCcccccEEEEEeCC---ccchhhhccCCCccccCC
Q psy852 578 -------------------GI----------EYADSFNVNVNKWLLTAFDSSCLWVADR---YKLTSALVVDPLYLQHGH 625 (891)
Q Consensus 578 -------------------Gi----------~~aDSIs~d~HK~L~~P~g~G~llvR~~---~~L~~~l~~~~~Yl~~~~ 625 (891)
|. +.+|.+++++||+++.|.| |+++.++. +.+.. +. .+.....
T Consensus 224 ~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~-~~---~~~~~~~ 298 (467)
T 2oqx_A 224 SARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTE-CR---TLCVVQE 298 (467)
T ss_dssp CTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHH-HH---HHHHHTT
T ss_pred chhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHH-HH---HhhhccC
Confidence 22 3478999999999998865 55555544 12211 11 0100000
Q ss_pred CCCccccCCcccccccccchHHHHHHHHHH-HhhH-HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecC--C
Q psy852 626 EGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LSGL-QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRS--E 701 (891)
Q Consensus 626 e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~G~-~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~--~ 701 (891)
. ...++ +....++ . ++. .+ .+.+ .+.+++..++++++.+.|++. ++++. +.....++|.+.+ .
T Consensus 299 -~---~~~~~---~~~~~~~--~-al~-~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~ 365 (467)
T 2oqx_A 299 -G---FPTYG---GLEGGAM--E-RLA-VGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLP 365 (467)
T ss_dssp -S---SCCCC---CCCHHHH--H-HHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHST
T ss_pred -C---ccccc---chhhhHH--H-HHH-HhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcc
Confidence 0 00001 1111111 1 121 11 1112 235566678889999999887 77777 5556677888742 1
Q ss_pred cchhhhhh-HHHHHHHH-HhCCcEEEeeccc-----c--------CCeEE-EEecCC-CCHHHHHHHHHHHHHHHH
Q psy852 702 NNLIADQN-NRKLLEDI-NASGRLHMVPASQ-----E--------QNDEV-FELQER-KRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 702 ~~~~~d~l-n~~L~~~L-~~~G~~~~s~s~~-----~--------g~~~l-~sv~~~-tT~edId~li~~L~ei~~ 760 (891)
+. .-+.. ...+.+.| .+.|+.+..+..+ . +...+ ++++.. +|++||+++++.|++++.
T Consensus 366 ~~-~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~ 440 (467)
T 2oqx_A 366 HI-PADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp TS-CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred cC-CcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 10 01223 56788888 7889875532221 0 12567 988888 999999999999998763
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-07 Score=101.57 Aligned_cols=87 Identities=9% Similarity=0.033 Sum_probs=65.7
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccH-HHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRG-ATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~-~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i 220 (891)
|++..-+|.+...++...+.+++.++.+.++.+++ +++.+.+.+ .+.+|+++..+|.+|.+-| +++|+++
T Consensus 101 vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~ 174 (364)
T 1lc5_A 101 AMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADR 174 (364)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhccC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 66667788998888877788999999886333553 444443321 1345666777999999998 8999999
Q ss_pred HHHcCCceeeeccccCC
Q psy852 221 AKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~ 237 (891)
|+++|+++++|.+|+++
T Consensus 175 ~~~~~~~li~De~~~~~ 191 (364)
T 1lc5_A 175 CKSLNINLILDEAFIDF 191 (364)
T ss_dssp HHHHTCEEEEECTTGGG
T ss_pred hhhcCcEEEEECcChhh
Confidence 99999999999999543
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=5.1e-07 Score=101.03 Aligned_cols=254 Identities=9% Similarity=-0.027 Sum_probs=156.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +++|+++++..++.+... +.-.|+++.-+|.+...++...|.+++.+|.+++ +.
T Consensus 106 ~v~--~~~g~~~al~~~~~~l~~-------------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 164 (416)
T 1bw0_A 106 NVV--LCSGGSHGILMAITAICD-------------------AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWE 164 (416)
T ss_dssp GEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTE
T ss_pred eEE--EeCChHHHHHHHHHHhCC-------------------CCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCC
Confidence 455 678999999888766411 1124777778888888888888999999998653 67
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEec----CCccc-----------hhhh-----h---------cCC---------CC-
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVSTT----LGTTS-----------CYRK-----S---------QGI---------EY- 581 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~-----------c~~~-----l---------dGi---------~~- 581 (891)
+|+++|++++++.+ .++++.+ .|++. |.++ + .|- ..
T Consensus 165 ~d~~~l~~~l~~~~-----~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 239 (416)
T 1bw0_A 165 ADLDEIRRLKDDKT-----KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF 239 (416)
T ss_dssp ECHHHHHHHCCTTE-----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS
T ss_pred CCHHHHHHHhccCC-----eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc
Confidence 99999999987532 2233322 34432 3321 1 111 00
Q ss_pred ---c-cEEEEcCcccCCcc-cccEEEEEeCC-ccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH-
Q psy852 582 ---A-DSFNVNVNKWLLTA-FDSSCLWVADR-YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY- 654 (891)
Q Consensus 582 ---a-DSIs~d~HK~L~~P-~g~G~llvR~~-~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l- 654 (891)
. +-+..++||+++.| ..+|+++.+++ ..+.........+.. ..++ ...+.+++....+
T Consensus 240 ~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~---------~~~~------~~~~~~~a~~~~l~ 304 (416)
T 1bw0_A 240 ETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGM---------LVCG------PCTVVQAALGEALL 304 (416)
T ss_dssp CCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHH---------HHTC------SCHHHHHHHHHHHH
T ss_pred cCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhc---------cccC------CCcHHHHHHHHHHh
Confidence 1 23456899998777 56899998875 332211100000000 0011 1122333333333
Q ss_pred --HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHH-HhCCcEEEeecccc
Q psy852 655 --GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDI-NASGRLHMVPASQE 731 (891)
Q Consensus 655 --G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L-~~~G~~~~s~s~~~ 731 (891)
+.+.+++..++..++++++.+.|++.+++++..+...+.+.+++....-.. ......+.+.| .+.|+.+..+....
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~ 383 (416)
T 1bw0_A 305 NTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRD-IKTDVEFFEKLLEEENVQVLPGTIFH 383 (416)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSS-CCSHHHHHHHHHHHHCEECEEGGGGT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCC-CCCHHHHHHHHHHHCCEEEecccccC
Confidence 356788888899999999999999988888775544566777774210000 01346777877 47898866555444
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
....+ ++++ +++++|+++++.|.+.+.
T Consensus 384 ~~~~iRis~~--~~~e~l~~~l~~l~~~l~ 411 (416)
T 1bw0_A 384 APGFTRLTTT--RPVEVYREAVERIKAFCQ 411 (416)
T ss_dssp CTTEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 34566 8884 689999999999987763
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.71 E-value=6e-07 Score=100.21 Aligned_cols=249 Identities=9% Similarity=0.000 Sum_probs=144.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-HHHHHH--HcCc--eEEEecCC-CCCCc
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC-VEKAAM--MAFV--RLKILEPD-DKNSL 541 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S-v~Kaa~--l~gv--~v~~Vp~d-~~G~m 541 (891)
+++||++++..++.++.. +.-.|+++..+|.+ +...+. +.+. +.+.++.+ +++.+
T Consensus 99 ~~~~Gs~a~~~al~~~~~-------------------~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (425)
T 3ecd_A 99 QPHSGAQANGAVMLALAK-------------------PGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLI 159 (425)
T ss_dssp CCSSHHHHHHHHHHHHCC-------------------TTCEEEEECC------------------CEEEEECCCTTTSSC
T ss_pred ecCchHHHHHHHHHHccC-------------------CCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCcc
Confidence 367889998887765410 12247777888877 323333 3343 55566766 45899
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE-ecCCccc--------hhhh-----hcC---------------CCCccEEEEcCccc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS-TTLGTTS--------CYRK-----SQG---------------IEYADSFNVNVNKW 592 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv-ataGTT~--------c~~~-----ldG---------------i~~aDSIs~d~HK~ 592 (891)
|+++|+++|.+.. ...++++ .+.|+.. |.++ +|. ++.+|.++.++||+
T Consensus 160 d~~~l~~~i~~~~---~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~ 236 (425)
T 3ecd_A 160 DYDQVEALAQQHK---PSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKT 236 (425)
T ss_dssp CHHHHHHHHHHHC---CSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGG
T ss_pred CHHHHHHHHhhcC---CcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcc
Confidence 9999999997531 1233333 3345443 4331 111 23479999999999
Q ss_pred CCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccc-cccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy852 593 LLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELAK 671 (891)
Q Consensus 593 L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~ 671 (891)
+.+|. .|+++.+++... +.+.. +...+ ..++- ......++.++.....+++.+..++..++++
T Consensus 237 l~g~~-~g~~~~~~~~~~-~~~~~---~~~~~-----------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 300 (425)
T 3ecd_A 237 LRGPR-GGFVLTNDEEIA-KKINS---AVFPG-----------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQ 300 (425)
T ss_dssp GCCCS-CEEEEESCHHHH-HHHHH---HHC----------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred cCCCC-cEEEEeCCHHHH-HHHHh---hhCcc-----------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 98776 477777654322 21111 00000 00010 1122344555555555778888999999999
Q ss_pred HHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec------cccCCeEE-EEe----
Q psy852 672 LFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA------SQEQNDEV-FEL---- 739 (891)
Q Consensus 672 ~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s------~~~g~~~l-~sv---- 739 (891)
++.+.|++ .++++..+ ...+++.+.+.+. ....+.+.+.|.+.|+.+.... .......+ +++
T Consensus 301 ~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~ 374 (425)
T 3ecd_A 301 ALGDVLKA-GGVDLVTGGTDNHLLLVDLRPK-----GLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGT 374 (425)
T ss_dssp HHHHHHHH-TTCEEGGGSCSSSEEEEECGGG-----TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHH
T ss_pred HHHHHHHh-CCCeeccCCCCceEEEEEeCCC-----CCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhhe
Confidence 99999988 47888753 3567788877542 1234577788888898754322 01112345 773
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei~~ 760 (891)
....++++|+++++.|++++.
T Consensus 375 ~~~~~~e~i~~~~~~l~~~l~ 395 (425)
T 3ecd_A 375 TRGFGAAEFREVGRLILEVFE 395 (425)
T ss_dssp HTTCCHHHHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHHHHh
Confidence 335579999999999998874
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-07 Score=104.91 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=57.9
Q ss_pred HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeec----ccCccccccCHHHHHHHHHH--cCCceeeecc
Q psy852 160 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL----GTTSCCSFDNLAEIGPVAKE--FDVWLHVDGA 233 (891)
Q Consensus 160 ~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~----Gtt~~GavDpl~~I~~i~~~--~~~~lHvDaA 233 (891)
...|.+++.|+. ++|.+|+++|++++++. ..|-+|+++. .++.+|.+.|+++|+++|++ +|+++++|.|
T Consensus 146 ~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~----~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a 220 (427)
T 3hvy_A 146 REYGVKYKMVDL-KDGKVDINTVKEELKKD----DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNC 220 (427)
T ss_dssp GGGTCEEEECCC-BTTBCCHHHHHHHHHHC----TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred HHcCCEEEEecC-CCCCcCHHHHHHHhhCC----CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 335778999998 78999999999999841 0134666666 78999999999999999999 7888888888
Q ss_pred cc
Q psy852 234 YA 235 (891)
Q Consensus 234 ~G 235 (891)
++
T Consensus 221 ~~ 222 (427)
T 3hvy_A 221 YG 222 (427)
T ss_dssp TC
T ss_pred cc
Confidence 74
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-07 Score=102.84 Aligned_cols=91 Identities=14% Similarity=-0.018 Sum_probs=76.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEec--CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~--d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~ 219 (891)
|+++.-+|.+....+...+.+++.++. ++++.+|+++|++.+++.. ..+.+++.+..+|.||.+ +++++|++
T Consensus 146 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~l~~i~~ 222 (420)
T 4f4e_A 146 VAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYE---PGTIVVLHACCHNPTGVDLNDAQWAQVVE 222 (420)
T ss_dssp EEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 777788899998888888889999998 4578999999999997431 224688888999999999 55778999
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|+++++|.+|+++.
T Consensus 223 ~~~~~~~~li~De~y~~~~ 241 (420)
T 4f4e_A 223 VVKARRLVPFLDIAYQGFG 241 (420)
T ss_dssp HHHHHTCEEEEEESCTTSS
T ss_pred HHHHCCcEEEEcccccccc
Confidence 9999999999999997654
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.3e-07 Score=101.81 Aligned_cols=137 Identities=9% Similarity=0.025 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC
Q psy852 53 PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP 132 (891)
Q Consensus 53 p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~ 132 (891)
+...++.+.+.+++++.+|++.+. +.+ .+++||+......+..+ ..
T Consensus 76 ~g~~~lr~~la~~l~~~~g~~~~~-------------~~i--------------~~~~g~~~al~~~~~~l-~~------ 121 (398)
T 3ele_A 76 QGDVETRAAIAEFLNNTHGTHFNA-------------DNL--------------YMTMGAAASLSICFRAL-TS------ 121 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCG-------------GGE--------------EEESSHHHHHHHHHHHH-CC------
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCh-------------HHE--------------EEccCHHHHHHHHHHHH-cC------
Confidence 344789999999999999975331 111 13567764332222222 11
Q ss_pred ccccccccCC-eEEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc
Q psy852 133 FVDEGVLLSK-LMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS 210 (891)
Q Consensus 133 ~~~~g~~~~~-~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga 210 (891)
+. ..|++..-+|.+...++...+.+++.+|.++ ++.+|+++|++++++. +.+|+++..+|.+|.
T Consensus 122 --------~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~ 187 (398)
T 3ele_A 122 --------DAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAH------TRGVIINSPNNPSGT 187 (398)
T ss_dssp --------STTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTT------EEEEEECSSCTTTCC
T ss_pred --------CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcC------CCEEEEcCCCCCCCC
Confidence 11 2477777889999888887888999999986 4689999999988653 346677788999999
Q ss_pred ccC---HHHHHHHHHH------cCCceeeeccccCC
Q psy852 211 FDN---LAEIGPVAKE------FDVWLHVDGAYAGS 237 (891)
Q Consensus 211 vDp---l~~I~~i~~~------~~~~lHvDaA~GG~ 237 (891)
+-| +.+|+++|++ +|+++++|.+|+++
T Consensus 188 ~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~ 223 (398)
T 3ele_A 188 VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREI 223 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTC
T ss_pred CCCHHHHHHHHHHHHhhhhccCCCeEEEEecccccc
Confidence 988 6777789998 89999999999654
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-07 Score=101.47 Aligned_cols=236 Identities=13% Similarity=0.072 Sum_probs=142.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~ 543 (891)
+.++|++++..++.+... +.-.|+++...|.+....+ ...|++++.+|.+ |+
T Consensus 85 ~~~sG~~a~~~~l~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~ 140 (398)
T 1gc0_A 85 ALASGMGAITSTLWTLLR-------------------PGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DL 140 (398)
T ss_dssp EESSHHHHHHHHHHHHCC-------------------TTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CH
T ss_pred EECCHHHHHHHHHHHHhc-------------------CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CH
Confidence 345668999988877511 1225888888998887776 3467888888874 89
Q ss_pred HHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++++ ..+++.. ..|... |+++ +|.+ ..+|.+..++||++++|
T Consensus 141 ~~l~~~i~~~~----~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~ 216 (398)
T 1gc0_A 141 QALEAAMTPAT----RVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGH 216 (398)
T ss_dssp HHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCS
T ss_pred HHHHHhcCCCC----eEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCC
Confidence 99999987532 1222222 234433 4331 2221 24899999999999999
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
.+ .|+++.+++. +...+.....++ + +-....+..|..++. .+.+...+++..++++++.
T Consensus 217 ~~~~~G~l~~~~~~-~~~~~~~~~~~~------------~----~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~ 277 (398)
T 1gc0_A 217 GDITAGIVVGSQAL-VDRIRLQGLKDM------------T----GAVLSPHDAALLMRG--IKTLNLRMDRHCANAQVLA 277 (398)
T ss_dssp SSCCCEEEEECHHH-HHHHHHTHHHHH------------T----CCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEChHH-HHHHHHHHhhcc------------C----CCCCCHHHHHHHHhc--cchHHHHHHHHHHHHHHHH
Confidence 87 6888776542 221111100000 0 001223455655543 3556777778888888888
Q ss_pred HHhccCCCcE--------------EeCC---CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe---e-------
Q psy852 675 GKVRRDPRFE--------------ISND---VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV---P------- 727 (891)
Q Consensus 675 ~~L~~~~~~e--------------il~~---~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s---~------- 727 (891)
+.|++.+.++ +..+ ...++++|.+.+. .+.....|.+.|+.... +
T Consensus 278 ~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~l~~~~i~~~~~s~G~~~sl~~ 349 (398)
T 1gc0_A 278 EFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG--------IGAGRRFMNALQLFSRAVSLGDAESLAQ 349 (398)
T ss_dssp HHHHTCTTEEEEEEC----------------CCTTEEEEEETTH--------HHHHHHHHHHCSSSEECSCCSCSSCEEE
T ss_pred HHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC--------HHHHHHHHHhCCCceeccCCCCcceeee
Confidence 8887765443 2222 2468999998531 22344445555554332 1
Q ss_pred -cc-------------ccC--CeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 728 -AS-------------QEQ--NDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 728 -s~-------------~~g--~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
+. ..+ ...+ +|++..+++++|+.+.++|+++
T Consensus 350 ~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 350 HPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp CGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 10 001 3567 9999999999999999998864
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.5e-07 Score=103.06 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=72.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA---EIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~~i 220 (891)
.|++..-+|.+....+...+.+++.++.+++| +|+++|++.+++.. .-++++.+..+|.+|.+-|.+ +|+++
T Consensus 117 ~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~~~----~~~v~~~~~~~nptG~~~~~~~l~~l~~~ 191 (397)
T 2zyj_A 117 PVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKRER----PRFLYLIPSFQNPTGGLTPLPARKRLLQM 191 (397)
T ss_dssp EEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHCC----CSCEEECCBSCTTTCCBCCHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhhcC----CeEEEECCCCcCCCCCcCCHHHHHHHHHH
Confidence 36777788999988887778899999998776 99999999997621 113335677789999998765 89999
Q ss_pred HHHcCCceeeeccccCCc
Q psy852 221 AKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~~ 238 (891)
|+++|+++++|.+|+++.
T Consensus 192 ~~~~~~~li~De~~~~~~ 209 (397)
T 2zyj_A 192 VMERGLVVVEDDAYRELY 209 (397)
T ss_dssp HHHHTCCEEEECTTTTCB
T ss_pred HHHcCCEEEEeCCccccc
Confidence 999999999999996643
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.4e-07 Score=104.02 Aligned_cols=94 Identities=12% Similarity=0.008 Sum_probs=76.6
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~ 218 (891)
.|+++.-+|.+...++...+.+++.+++|++ +.+|+++|++.+++... +..+.+|+++..+|.||.+ +++++|+
T Consensus 183 ~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~ 261 (498)
T 3ihj_A 183 GVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVI 261 (498)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHH
Confidence 5888888999999888888889999999865 48999999999987532 1234566666889999999 5577799
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|+++++++++|-+|+.+.
T Consensus 262 ~la~~~~~~li~De~y~~~~ 281 (498)
T 3ihj_A 262 HFAWEEKLFLLADEVYQDNV 281 (498)
T ss_dssp HHHHHHTCEEEEECTTTTCB
T ss_pred HHHHHcCcEEEEEcCccccc
Confidence 99999999999999996543
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-07 Score=99.59 Aligned_cols=244 Identities=8% Similarity=-0.054 Sum_probs=153.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+++ +++|+++++..++.+... +.-.|++..-+|.+...++...|.+++.+|.+++ +|
T Consensus 83 ~i~--~t~g~~~a~~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~d 139 (377)
T 3fdb_A 83 WIF--PIPDVVRGLYIAIDHFTP-------------------AQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG--IN 139 (377)
T ss_dssp GEE--EESCHHHHHHHHHHHHSC-------------------TTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS--CC
T ss_pred HEE--EeCChHHHHHHHHHHhcC-------------------CCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC--CC
Confidence 556 788999999888765421 1123777888899998888888999999999876 99
Q ss_pred HHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C------CCC-----cc
Q psy852 543 GATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G------IEY-----AD 583 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G------i~~-----aD 583 (891)
+++|++++++.+ ..++++. ..|++. |.++ +| | +.. .+
T Consensus 140 ~~~l~~~l~~~~----~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 215 (377)
T 3fdb_A 140 LHDVEKGFQAGA----RSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVC 215 (377)
T ss_dssp HHHHHHHHHTTC----CEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHE
T ss_pred HHHHHHHhccCC----CEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcE
Confidence 999999998742 2223322 245543 3331 11 2 001 12
Q ss_pred EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHH
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQ 660 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~ 660 (891)
-+..+.||+++.| ..+|++++.++.... .+.....+. .+ ....+.+++....+. .+.++
T Consensus 216 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~-~~~~~~~~~-----------~~------~~~~~~~~a~~~~l~~~~~~~~ 277 (377)
T 3fdb_A 216 ITITAPSKAWNIAGLKCAQIIFSNPSDAE-HWQQLSPVI-----------KD------GASTLGLIAAEAAYRYGTDFLN 277 (377)
T ss_dssp EEEECSTTTTTCGGGCCEEEECCSHHHHH-HHHHSCHHH-----------HC------CCCHHHHHHHHHHHHHCHHHHH
T ss_pred EEEEeChHhccCcchhheEEEeCCHHHHH-HHHHHHHhh-----------cC------CCCHHHHHHHHHHHhccHHHHH
Confidence 5577899999644 668877776554332 221110000 00 011233333333332 35577
Q ss_pred HHHHHHHHHHHHHHHHhcc-CCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhC-CcEEEeecccc--CCeEE
Q psy852 661 KYIRRHCELAKLFEGKVRR-DPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINAS-GRLHMVPASQE--QNDEV 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~s~~~--g~~~l 736 (891)
+..++..++++++.+.|++ .|++++..+....++++.++..+ ...++.+.|.++ |+.+..+.... +...+
T Consensus 278 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~ 351 (377)
T 3fdb_A 278 QEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTT------IEGSPSEFFIEKAKVAMNDGAWFGEDGTGFC 351 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSC------CCSCHHHHHHHHHCEECEEGGGGCGGGTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccC------CCHHHHHHHHHhCCEEecCChhccCCCCCEE
Confidence 8888889999999999988 78998876544445567775421 123456666654 88755444332 34566
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++ +++++|+++++.|++++
T Consensus 352 Ris~~--~~~e~i~~~l~~l~~~l 373 (377)
T 3fdb_A 352 RLNFA--TSREVLEEAIDRMAKAV 373 (377)
T ss_dssp EEECC--SCHHHHHHHHHHHHHHH
T ss_pred EEEeC--CCHHHHHHHHHHHHHHH
Confidence 8876 48999999999998776
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-07 Score=104.67 Aligned_cols=91 Identities=14% Similarity=0.025 Sum_probs=73.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEec-CC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEP-DD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~-d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|+++.-+|.+....+...|.+++.++. ++ ++.+|+++|++.+++.. ....+++.+..+|.||.+-+ +++|++
T Consensus 127 Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~~~~p~nPtG~~~~~~~l~~l~~ 203 (412)
T 1yaa_A 127 VYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP---EGSIFVLHSCAHNPTGLDPTSEQWVQIVD 203 (412)
T ss_dssp EEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC---TTCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 667777888888888777889999998 53 78899999999997531 12356666889999999955 667889
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|+++++|.+|+++.
T Consensus 204 ~~~~~~~~li~De~~~~~~ 222 (412)
T 1yaa_A 204 AIASKNHIALFDTAYQGFA 222 (412)
T ss_dssp HHHHTTCEEEEEESCTTTS
T ss_pred HHHHCCCEEEEeccccccc
Confidence 9999999999999996543
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-07 Score=103.78 Aligned_cols=239 Identities=12% Similarity=0.180 Sum_probs=143.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|++++..++.+... +.-.|+++..+|.+...++ ...|++++.+|.+ |+
T Consensus 84 ~~~sG~~a~~~~l~~~~~-------------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~ 139 (398)
T 2rfv_A 84 ATASGISAITTTLLTLCQ-------------------QGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KP 139 (398)
T ss_dssp EESSHHHHHHHHHHHHCC-------------------TTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SH
T ss_pred EECCHHHHHHHHHHHHhC-------------------CCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CH
Confidence 355678999988876511 1235888888999888776 5678899999885 89
Q ss_pred HHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++++ ..+++.. ..|... |+++ +|.+ ..+|.+..++||++++|
T Consensus 140 ~~l~~~i~~~~----~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~ 215 (398)
T 2rfv_A 140 EEIRAAMRPET----KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGH 215 (398)
T ss_dssp HHHHHHCCTTE----EEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCS
T ss_pred HHHHHhcCCCC----eEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCC
Confidence 99999987532 1222222 234433 4431 2221 13799999999999999
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
.+ +|+++.+++. +...+.. +.. .+ . +-....+.+|+.++.+ +.+...+++..++++++.
T Consensus 216 g~~~~G~~~~~~~~-~~~~~~~---~~~----------~~--~-~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~ 276 (398)
T 2rfv_A 216 GDVIGGIIVGKQEF-IDQARFV---GLK----------DI--T-GGCMSPFNAWLTLRGV--KTLGIRMERHCENALKIA 276 (398)
T ss_dssp SCCCCEEEEECHHH-HHHHHHT---HHH----------HT--T-CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEECHHH-HHHHHHH---HHH----------hC--C-CCCCCHHHHHHHHhhh--hhHHHHHHHHHHHHHHHH
Confidence 87 6888887542 2211110 000 00 0 0011234556665544 345556666677777777
Q ss_pred HHhccCCC--------------cEEeCC---CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc--------
Q psy852 675 GKVRRDPR--------------FEISND---VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS-------- 729 (891)
Q Consensus 675 ~~L~~~~~--------------~eil~~---~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~-------- 729 (891)
+.|++.+. +++..+ ...++++|.+.+. +.....+.+.+...|+....+..
T Consensus 277 ~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~ 351 (398)
T 2rfv_A 277 RFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG-----LEAGRRMINSVELCLLAVSLGDTETLIQHPA 351 (398)
T ss_dssp HHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-----HHHHHHHHTTCSSSEECSCCSSSSCEEECHH
T ss_pred HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC-----HHHHHHHHHhCCcceeccCCCCcceeeeccc
Confidence 77776543 333221 2468999988632 22344455555444443222210
Q ss_pred -------------ccC--CeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 730 -------------QEQ--NDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 730 -------------~~g--~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
..+ ...+ ++++..+++++|++++++|+++
T Consensus 352 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 352 SMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 012 4567 9999999999999999998764
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=108.73 Aligned_cols=80 Identities=10% Similarity=0.054 Sum_probs=66.8
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+...++ ...|.+++.++.+ |+++|++++++. +.+|+++..+|.+|.+.|+++|++
T Consensus 173 ~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~~------tk~v~l~~p~NptG~v~~l~~i~~ 241 (464)
T 1ibj_A 173 EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISE 241 (464)
T ss_dssp EEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhccC------ceEEEEeCCCCCCCEeecHHHHHH
Confidence 4777888899887653 3357788898875 899999988643 458888999999999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++++|.+|
T Consensus 242 la~~~gi~livDea~ 256 (464)
T 1ibj_A 242 MAHAQGALVLVDNSI 256 (464)
T ss_dssp HHHTTTCEEEEECTT
T ss_pred HHHHcCCEEEEECCC
Confidence 999999888888888
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=97.54 Aligned_cols=250 Identities=11% Similarity=0.065 Sum_probs=150.9
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----H
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----M 524 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~ 524 (891)
.+.+++.+... . .++ ++ +|++++..++.++.. +.-.|+++..+|.+...+. .
T Consensus 58 ~~~la~~~~~~-~-~i~--~~-sGt~a~~~~~~~~~~-------------------~g~~vl~~~~~~~~~~~~~~~~~~ 113 (386)
T 1cs1_A 58 QRALAELEGGA-G-AVL--TN-TGMSAIHLVTTVFLK-------------------PGDLLVAPHDCYGGSYRLFDSLAK 113 (386)
T ss_dssp HHHHHHHHTCS-E-EEE--ES-SHHHHHHHHHHHHCC-------------------TTCEEEEETTCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-c-EEE--eC-CHHHHHHHHHHHHhC-------------------CCCEEEEecCCcHhHHHHHHHHHH
Confidence 34555555432 2 333 34 448999888776510 1124777788888765543 4
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc--------hhhh-----hcCC---------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS--------CYRK-----SQGI--------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c~~~-----ldGi--------- 579 (891)
..|.+++.+|.+ |+++|+++|++++ ..+++... .|... |+++ +|.+
T Consensus 114 ~~g~~~~~~~~~-----d~~~l~~~i~~~~----~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~ 184 (386)
T 1cs1_A 114 RGCYRVLFVDQG-----DEQALRAALAEKP----KLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNP 184 (386)
T ss_dssp TTSCEEEEECTT-----CHHHHHHHHHTCC----SEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG
T ss_pred hcCCEEEEeCCC-----CHHHHHHhhccCC----cEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence 467888888874 8999999997532 22333322 24433 4431 2211
Q ss_pred --CCccEEEEcCcccCCccccc--EEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH
Q psy852 580 --EYADSFNVNVNKWLLTAFDS--SCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG 655 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g~--G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG 655 (891)
..+|.+..++||++++|.+. |+++.++++.... +.. +.. .++ -....+..|..++ +
T Consensus 185 ~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~-l~~---~~~----------~~~----~~~~~~~~~~~~~--~ 244 (386)
T 1cs1_A 185 LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTE-LAW---WAN----------NIG----VTGGAFDSYLLLR--G 244 (386)
T ss_dssp GGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHH-HHH---HHH----------HHT----CBCCHHHHHHHHH--H
T ss_pred cccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHH-HHH---HHH----------hcC----CCCCHHHHHHHHh--c
Confidence 24799999999999999874 8888876432221 110 000 000 0011233444433 3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEe-CC----------------CceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEIS-ND----------------VRLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil-~~----------------~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
.+.+.+..++..++++++.+.|++.+.+.-. .+ ...++++|.+.+. .+.+...|.
T Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ 316 (386)
T 1cs1_A 245 LRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD--------EQTLRRFLG 316 (386)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC--------HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC--------HHHHHHHHH
Confidence 4456667777888899999998887665432 11 1267899998531 456777788
Q ss_pred hCCcEEEe---e--------cc---------------ccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMV---P--------AS---------------QEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 719 ~~G~~~~s---~--------s~---------------~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.|++... + +. -....++ ++++..+++++|+.+.++|+++.
T Consensus 317 ~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 317 GLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp TCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred hCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 88986541 1 00 0113567 99999999999999999888653
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-07 Score=104.49 Aligned_cols=250 Identities=9% Similarity=-0.057 Sum_probs=153.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CCC--
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKN-- 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~G-- 539 (891)
+|+ +++|+++++..++.+... +.-.|++..-+|.+...++...|.+++.+|.+ ++|
T Consensus 91 ~v~--~t~g~~~a~~~~~~~l~~-------------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~ 149 (399)
T 1c7n_A 91 WII--NTAGVVPAVFNAVREFTK-------------------PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYY 149 (399)
T ss_dssp GEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEE
T ss_pred hEE--EcCCHHHHHHHHHHHhcC-------------------CCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCE
Confidence 455 788999999888765421 12247778888989888888888999999985 443
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C--------CC---
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G--------IE--- 580 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G--------i~--- 580 (891)
.+|+++|+++|++. ....++++. ..|+.. |.++ +| | +.
T Consensus 150 ~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 226 (399)
T 1c7n_A 150 TIDFQKLEKLSKDK---NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQL 226 (399)
T ss_dssp ECCHHHHHHHHTCT---TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHH
T ss_pred EEcHHHHHHHhccC---CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccc
Confidence 69999999999732 111222222 234432 3331 11 1 11
Q ss_pred -CccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HH
Q psy852 581 -YADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GL 656 (891)
Q Consensus 581 -~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~ 656 (891)
..+-+..+.||+++.| ..+|++++++++.+.........+ +.. ....+.++++...+ +.
T Consensus 227 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--------------~~~---~~~~~~~~a~~~~l~~~~ 289 (399)
T 1c7n_A 227 ADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDAT--------------SGM---PFTTLGYKACEICYKECG 289 (399)
T ss_dssp HTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHT--------------TCC---CCCHHHHHHHHHHHHHCH
T ss_pred cCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhc--------------ccC---CCCHHHHHHHHHHHhCCh
Confidence 1234567899999855 458999987653332211110000 000 01123334333333 24
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc--C
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE--Q 732 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~--g 732 (891)
+.+++..++..++++++.+.|++ +|++++..+....+++++++.. +.....+.+.|. +.|+.+..+.... +
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~~~~~~ 364 (399)
T 1c7n_A 290 KWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRAL-----KMDHKAMEEFMIHKAQIFFDEGYIFGDGG 364 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGG-----CCCHHHHHHHHHHTTCCCCEEGGGGCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccC-----CCCHHHHHHHHHHhCCEEEeCccccCCCC
Confidence 56777778888999999999988 7888776543333445777531 113567888886 6898765444332 3
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
...+ ++++.. +++|+++++.|++.++
T Consensus 365 ~~~iRis~~~~--~~~l~~~l~~l~~~l~ 391 (399)
T 1c7n_A 365 IGFERINLAAP--SSVIQESLERLNKALK 391 (399)
T ss_dssp TTEEEEECCSC--HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccC--HHHHHHHHHHHHHHHH
Confidence 4566 887654 7899999999988764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=104.75 Aligned_cols=82 Identities=9% Similarity=0.117 Sum_probs=67.9
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+....+ ...|.+++.++.+ |+++|++.+++. +.+|+++..+|.+|.+.|+++|++
T Consensus 107 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~~------t~~v~~~~p~nptG~~~~l~~i~~ 175 (403)
T 3cog_A 107 QIICMDDVYGGTNRYFRQVASEFGLKISFVDCS-----KIKLLEAAITPE------TKLVWIETPTNPTQKVIDIEGCAH 175 (403)
T ss_dssp EEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT-----SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeeeCHHHHHH
Confidence 4888888999876654 2357789999876 899999988653 357888899999999999999999
Q ss_pred HHHHcC-CceeeeccccC
Q psy852 220 VAKEFD-VWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~-~~lHvDaA~GG 236 (891)
+|+++| +++++|.+|++
T Consensus 176 la~~~g~~~livD~~~~~ 193 (403)
T 3cog_A 176 IVHKHGDIILVVDNTFMS 193 (403)
T ss_dssp HHTSSSCCEEEEECTTTC
T ss_pred HHHHcCCCEEEEECCCcc
Confidence 999999 98999988844
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-06 Score=99.98 Aligned_cols=91 Identities=14% Similarity=0.021 Sum_probs=75.6
Q ss_pred EEecCCCChHHHHHHH----HcCCeEEEEec-CCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---
Q psy852 145 AYCSKEAHSCVEKAAM----MAFVRLKILEP-DDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL--- 214 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~----~~~~~v~~V~~-d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl--- 214 (891)
|+++.-+|.+....+. ..|.+++.++. |++ +.+|+++|++.+++.. ..+.+++.+..+|.||.+-+.
T Consensus 148 Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~---~~~~~v~~~~p~NPtG~~~~~~~l 224 (448)
T 3meb_A 148 FYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP---EKSIFLFHACAHNPSGIDFTEAQW 224 (448)
T ss_dssp EEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHH
T ss_pred EEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCC---CCcEEEEeCCCCCCCCcCCCHHHH
Confidence 8888888999888887 77889999998 665 8999999999998631 124688888889999998775
Q ss_pred HHHHHHHHHcCCceeeeccccCCc
Q psy852 215 AEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 215 ~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|+++|+++|+++++|.||+++.
T Consensus 225 ~~i~~l~~~~~~~li~Deay~~~~ 248 (448)
T 3meb_A 225 KELLPIMKEKKHIAFFDSAYQGFA 248 (448)
T ss_dssp HHHHHHHHHHTCEEEEEESCTTTS
T ss_pred HHHHHHHHHCCCEEEEeccccccc
Confidence 459999999999999999997644
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-06 Score=97.98 Aligned_cols=222 Identities=11% Similarity=0.019 Sum_probs=141.4
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc--------hhhh-
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS--------CYRK- 575 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c~~~- 575 (891)
.|+++...|.+...++...|.+++.+|.+ |+++|++++++........+++... .|+.. |+++
T Consensus 134 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~ 208 (401)
T 2bwn_A 134 IIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFG 208 (401)
T ss_dssp EEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHT
T ss_pred EEEECchhhHHHHHHHHHcCCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcC
Confidence 58888899999999998889999999985 8999999997532111122222222 34443 4331
Q ss_pred ----hc-----------C--------C-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCcc
Q psy852 576 ----SQ-----------G--------I-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAID 630 (891)
Q Consensus 576 ----ld-----------G--------i-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~ 630 (891)
+| | + +..|-+..+.+|.++.|- |+++.. ++ +.+.+.. ...|..
T Consensus 209 ~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G--G~~~~~-~~-~~~~l~~~~~~~~~-------- 276 (401)
T 2bwn_A 209 ALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAAS-AR-MVDAVRSYAPGFIF-------- 276 (401)
T ss_dssp CEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEEC-HH-HHHHHHHHCHHHHT--------
T ss_pred CEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC--CEEecC-HH-HHHHHHHhCcCcee--------
Confidence 11 1 1 124777779999998754 666653 32 2222211 111100
Q ss_pred ccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhH
Q psy852 631 YRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNN 710 (891)
Q Consensus 631 ~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln 710 (891)
+. ++-......+..+++.+...|+.+..++..++++++.+.|++. +++++. +..++++|++.. +...
T Consensus 277 ----~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~------~~~~ 343 (401)
T 2bwn_A 277 ----ST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGD------PVHT 343 (401)
T ss_dssp ----SB-CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCC------HHHH
T ss_pred ----cC-CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCeEEEEeCC------hHHH
Confidence 00 0111223344566666666677888899999999999999887 777764 455788888752 2245
Q ss_pred HHHHHHHH-hCCcEEEeecc--c-cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 711 RKLLEDIN-ASGRLHMVPAS--Q-EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 711 ~~L~~~L~-~~G~~~~s~s~--~-~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+.+.|. +.|+.+..... . .+...+ ++++.++|++||+++++.|+++.
T Consensus 344 ~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~ 397 (401)
T 2bwn_A 344 KAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397 (401)
T ss_dssp HHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 67888885 67877432221 1 133467 99998899999999999998775
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=98.64 E-value=8e-07 Score=98.51 Aligned_cols=88 Identities=8% Similarity=0.029 Sum_probs=73.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCC-cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHH---HHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN-SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAE---IGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g-~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~---I~~ 219 (891)
.|+++.-+|.+...++...+.+++.++.+++| .+|+++|++++.+. +.+|+++..+|.+|.+-|.++ |++
T Consensus 122 ~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~i~~ 195 (396)
T 3jtx_A 122 AIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKR------TKLVFVCSPNNPSGSVLDLDGWKEVFD 195 (396)
T ss_dssp EEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHT------EEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccC------cEEEEEECCCCCCCCcCCHHHHHHHHH
Confidence 47777788999988888788899999997665 68999999999764 346666678999999977666 889
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++|+++++|.+|+++
T Consensus 196 ~~~~~~~~li~De~~~~~ 213 (396)
T 3jtx_A 196 LQDKYGFIIASDECYSEI 213 (396)
T ss_dssp HHHHHCCEEEEECTTTTC
T ss_pred HHHHcCCEEEEEcccccc
Confidence 999999999999999654
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.1e-07 Score=99.57 Aligned_cols=243 Identities=10% Similarity=0.004 Sum_probs=149.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCC--C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN--S 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G--~ 540 (891)
+|+ +++|+++++..++.+... +.-.|++..-.|.+...++...|.+++.+|.++++ .
T Consensus 93 ~v~--~t~g~~~al~~~~~~l~~-------------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 151 (391)
T 3h14_A 93 RVV--ITPGSSGGFLLAFTALFD-------------------SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQ 151 (391)
T ss_dssp GEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTS
T ss_pred HEE--EecChHHHHHHHHHHhcC-------------------CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCC
Confidence 566 789999999888765421 11247788888999999888899999999998654 7
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hcC----------------CCCccEE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQG----------------IEYADSF 585 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ldG----------------i~~aDSI 585 (891)
+|+++|+++ + ...++++. ..|++. |.++ +|. ....+-+
T Consensus 152 ~d~~~l~~~---~----~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~ 224 (391)
T 3h14_A 152 PVPADFAGL---D----LAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYV 224 (391)
T ss_dssp CCHHHHTTS---C----CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEE
T ss_pred CCHHHHHhc---C----CeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEE
Confidence 899999876 1 11223322 245443 3331 111 1123455
Q ss_pred EEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH-HHhhHHHHH
Q psy852 586 NVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY-GLSGLQKYI 663 (891)
Q Consensus 586 s~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l-G~~G~~~~i 663 (891)
..+.+|+++ ....+|+++..++ +.+.+.....+ ..++ ...+.+++.+..+ +.+.+.+..
T Consensus 225 ~~s~sK~~g~~G~r~G~~~~~~~--~~~~~~~~~~~-----------~~~~------~~~~~~~a~~~~l~~~~~~~~~~ 285 (391)
T 3h14_A 225 INSFSKYFSMTGWRVGWMVVPED--QVRVVERIAQN-----------MFIC------APHASQVAALAALDCDAELQANL 285 (391)
T ss_dssp EEESSSTTCCTTSCCEEEECCGG--GHHHHHHHHHH-----------TTCC------CCHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEechhccCCccceeEEEEeCHH--HHHHHHHHHhh-----------hccC------CCHHHHHHHHHHhCChHHHHHHH
Confidence 668999997 5567888887544 22222100000 0001 1122223332222 456678888
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCCCce-eEEEEEecCCcchhhhhhHHHHHHHHHhC-CcEEEeecccc---CCeEE-E
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISNDVRL-GLVCFRLRSENNLIADQNNRKLLEDINAS-GRLHMVPASQE---QNDEV-F 737 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~~~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~s~~~---g~~~l-~ 737 (891)
++..++++++.+.|++.+ +....++.. ..+.+.+... .....++.+.|.++ |+.+..+..+. +...+ +
T Consensus 286 ~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRi 359 (391)
T 3h14_A 286 DVYKANRKLMLERLPKAG-FTRIAPPDGAFYVYADVSDL-----TDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRF 359 (391)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCCBCCCCBTTEEEEECTTT-----CSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHcC-CCcccCCCeeEEEEEecCcc-----CCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEE
Confidence 888999999999998874 333333333 4555666532 12456788887765 98765554432 24566 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~~ 760 (891)
+++. ++++|+++++.|+++..
T Consensus 360 s~~~--~~~~i~~~l~~l~~~~~ 380 (391)
T 3h14_A 360 SYAR--ATADIEEGLDRLEAFMQ 380 (391)
T ss_dssp ECCS--CHHHHHHHHHHHHHHHH
T ss_pred EecC--CHHHHHHHHHHHHHHHH
Confidence 8775 78999999999998874
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-06 Score=92.25 Aligned_cols=84 Identities=13% Similarity=-0.002 Sum_probs=71.3
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|++..-+|.+....+...|.+++.+++++++.+|+++|++.. .+.+|+++..+|.+|.+-|++++.++|++
T Consensus 92 ~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~ 163 (337)
T 3p1t_A 92 RFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVS--------RDDCVVLANPSNPTGQALSAGELDQLRQR 163 (337)
T ss_dssp EEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTCC--------TTEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred eEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhhc--------CCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 3778888999998888777889999999999999999998751 13588888889999999999999999999
Q ss_pred cCCceeeeccccC
Q psy852 224 FDVWLHVDGAYAG 236 (891)
Q Consensus 224 ~~~~lHvDaA~GG 236 (891)
+++ +.+|.||++
T Consensus 164 ~~~-~ivDea~~~ 175 (337)
T 3p1t_A 164 AGK-LLIDETYVD 175 (337)
T ss_dssp CSE-EEEECTTGG
T ss_pred CCc-EEEECCChh
Confidence 986 555998854
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-06 Score=96.93 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=68.9
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++.-+|.+...++...|.+++.++.++++.+|+++|+++++ . +.+|+++..+|.||.+-|.+++.++++.
T Consensus 102 ~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~------~~~v~l~~p~nptG~~~~~~~l~~l~~~ 174 (356)
T 1fg7_A 102 AILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRTLLEL 174 (356)
T ss_dssp EEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 47777889999988887777899999998888999999998775 2 3466667889999999887666555444
Q ss_pred --cCCceeeeccccC
Q psy852 224 --FDVWLHVDGAYAG 236 (891)
Q Consensus 224 --~~~~lHvDaA~GG 236 (891)
+|+++++|.+|++
T Consensus 175 ~~~~~~li~De~~~~ 189 (356)
T 1fg7_A 175 TRGKAIVVADEAYIE 189 (356)
T ss_dssp HTTTCEEEEECTTGG
T ss_pred CCCCCEEEEEccchh
Confidence 8899999999854
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=9.7e-07 Score=99.79 Aligned_cols=255 Identities=11% Similarity=0.043 Sum_probs=157.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
+++ +++|+++++..++.+... +.-.|+++.-+|......+...|++++.+|.+ .++.
T Consensus 120 ~v~--~t~g~t~al~~~~~~l~~-------------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 178 (427)
T 3dyd_A 120 DVI--LTSGCSQAIDLCLAVLAN-------------------PGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWE 178 (427)
T ss_dssp GEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTE
T ss_pred HEE--EecCcHHHHHHHHHHhcC-------------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCC
Confidence 455 788999999888776521 12247777888888888888889999998875 4578
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------CC---------CCcc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------GI---------EYAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------Gi---------~~aD 583 (891)
+|+++|+++|++.+ ..++++. ..|+.. |.++ +| |- ...+
T Consensus 179 ~d~~~l~~~l~~~~----~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~ 254 (427)
T 3dyd_A 179 IDLKQLEYLIDEKT----ACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVP 254 (427)
T ss_dssp ECHHHHHSSCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCC
T ss_pred CCHHHHHHHhccCC----CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCc
Confidence 99999999986532 1222222 234433 3321 11 10 1112
Q ss_pred EE-EEcCcccCCcc-cccEEEEEeCCcc-----chhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH
Q psy852 584 SF-NVNVNKWLLTA-FDSSCLWVADRYK-----LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL 656 (891)
Q Consensus 584 SI-s~d~HK~L~~P-~g~G~llvR~~~~-----L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~ 656 (891)
.| ..+.||.++.| ..+|+++++++.. +...+.. +... .++. -.+....+..+|+....
T Consensus 255 vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~---~~~~---------~~~~---~~~~~~a~~~~L~~~~~ 319 (427)
T 3dyd_A 255 ILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVK---LSQR---------ILGP---CTIVQGALKSILCRTPG 319 (427)
T ss_dssp EEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHH---HHHH---------HCCS---CHHHHHHHHHHHHHSCH
T ss_pred EEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHH---HHhc---------cCCC---CHHHHHHHHHHHHhcCH
Confidence 34 44999975544 5689999987521 1111110 0000 0000 01111222333333336
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccccCCeE
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQEQNDE 735 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g~~~ 735 (891)
+.+.++.++..++++++.+.|+++++++++.+.....+.+++......+ .....++.++|. +.|+++..+.......+
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~ 398 (427)
T 3dyd_A 320 EFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPE-FENDVEFTERLVAEQSVHCLPATCFEYPNF 398 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTT-CSSHHHHHHHHHHHHCEECEEGGGGTCTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCC-CCCHHHHHHHHHHHCCEEEECCcccCCCCe
Confidence 6788888899999999999999999998876655566666764210000 123456777774 68988666655555566
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ +++. +++++|+++++.|.++++
T Consensus 399 iRis~~--~~~e~i~~~l~~l~~~l~ 422 (427)
T 3dyd_A 399 IRVVIT--VPEVMMLEACSRIQEFCE 422 (427)
T ss_dssp EEEESC--SCHHHHHHHHHHHHHHHH
T ss_pred EEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 7 8875 789999999999988763
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.1e-08 Score=108.11 Aligned_cols=248 Identities=11% Similarity=0.041 Sum_probs=153.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC---CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD---KN 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~---~G 539 (891)
+|+ +++|+++++..++.+... +.-.|+++..+|.+...++...|.+++.+|.++ ++
T Consensus 88 ~v~--~t~g~~~al~~~~~~~~~-------------------~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 146 (411)
T 2o0r_A 88 EVL--VTVGATEAIAAAVLGLVE-------------------PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGF 146 (411)
T ss_dssp SEE--EEEHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEE
T ss_pred eEE--EeCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCC
Confidence 455 678999999988766421 112478888889998888888899999999865 36
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC--------C---C
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG--------I---E 580 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG--------i---~ 580 (891)
.+|+++|+++|++.. ..++++ +..|.+. |.++ .+| + .
T Consensus 147 ~~d~~~l~~~l~~~~----~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 222 (411)
T 2o0r_A 147 ALDADALRRAVTPRT----RALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMA 222 (411)
T ss_dssp ECCHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTG
T ss_pred CCCHHHHHHhhccCc----eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCC
Confidence 799999999996421 122333 2345442 3321 111 1 2
Q ss_pred CccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhH
Q psy852 581 YADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGL 659 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~ 659 (891)
..|.+..++||+++.| ..+|+++.+++ +.+.+.....+. .++. + ......+..+|+. +.+.+
T Consensus 223 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~--~~~~l~~~~~~~-----------~~~~--~-~~~~~a~~~~l~~-~~~~~ 285 (411)
T 2o0r_A 223 ERTITISSAAKMFNCTGWKIGWACGPAE--LIAGVRAAKQYL-----------SYVG--G-APFQPAVALALDT-EDAWV 285 (411)
T ss_dssp GGEEEEEEHHHHTTCTTTCEEEEECCHH--HHHHHHHHHHHH-----------TSCC--C-TTHHHHHHHHHHH-CHHHH
T ss_pred CCEEEEeechhhcCCccceEEEEeeCHH--HHHHHHHHHhhc-----------cCCC--C-hHHHHHHHHHHhC-ChHHH
Confidence 4688999999988744 33899887532 222221100000 0111 1 1111122233332 35567
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc-------
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE------- 731 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~------- 731 (891)
++..++..+++++|.+.|++. ++++..+.....+++++.+.. +....++.+.|. +.|+.+..+....
T Consensus 286 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~ 360 (411)
T 2o0r_A 286 AALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRPLG----YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQA 360 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECGGGT----CCCHHHHHHHHHHHHSEECEEGGGGSCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecCCCC----CCCHHHHHHHHHHhCCEEEcChhhhCCCccccc
Confidence 778888889999999999886 788765433347888885310 013467888776 5798765544331
Q ss_pred ------CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 ------QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 ------g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+...+ +++. +++++|+++++.|+++.
T Consensus 361 ~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~ 393 (411)
T 2o0r_A 361 SQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLA 393 (411)
T ss_dssp ----CCGGGCEEEECC--SCHHHHHHHHHHHGGGG
T ss_pred cccccCCCCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 23456 8875 38999999999887654
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-07 Score=103.08 Aligned_cols=244 Identities=8% Similarity=0.019 Sum_probs=152.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~m 541 (891)
+++ +++|+++++..++.+... +.-.|+++.-+|.+...++...|.+++.+|.++ ++.+
T Consensus 93 ~v~--~~~g~~~a~~~~~~~~~~-------------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 151 (386)
T 1u08_A 93 DIT--VTAGATEALYAAITALVR-------------------NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRV 151 (386)
T ss_dssp TEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCC
T ss_pred CEE--EcCChHHHHHHHHHHhCC-------------------CCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcC
Confidence 455 678999999888766410 112477778888888888888899999999976 5889
Q ss_pred CHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C--------C---CCc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G--------I---EYA 582 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G--------i---~~a 582 (891)
|+++|+++|++.. ..++++. ..|.+. |.++ +| | + ...
T Consensus 152 d~~~l~~~l~~~~----~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 227 (386)
T 1u08_A 152 DWQEFAALLSERT----RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER 227 (386)
T ss_dssp CHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTT
T ss_pred CHHHHHHhhcccC----EEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCc
Confidence 9999999986421 1223322 245442 3321 11 1 1 135
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhH
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGL 659 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~ 659 (891)
|.+..++||+++.| ..+|+++++++ +.+.+.....+ ..++. ..+.+++....+ +.+.+
T Consensus 228 ~i~~~s~sK~~~~~G~r~G~~~~~~~--~~~~l~~~~~~-----------~~~~~------~~~~~~a~~~~l~~~~~~~ 288 (386)
T 1u08_A 228 AVAVSSFGKTYHMTGWKVGYCVAPAP--ISAEIRKVHQY-----------LTFSV------NTPAQLALADMLRAEPEHY 288 (386)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEECCHH--HHHHHHHHHHH-----------HTSSC------CHHHHHHHHHHHHHCTHHH
T ss_pred EEEEecchhhcCCcccceEEEEcCHH--HHHHHHHHHHh-----------hccCC------ChHHHHHHHHHHhCCcHHH
Confidence 78899999999844 34899887643 22222110000 00111 112222222222 24567
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc----cCCe
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ----EQND 734 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~----~g~~ 734 (891)
++..++..+++++|.+.|++. ++++..+.....+++++++.. .....++.+.|. +.|+.+..+... .+..
T Consensus 289 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~ 363 (386)
T 1u08_A 289 LALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVS----TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHK 363 (386)
T ss_dssp HTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTC----CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCCC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCC
Confidence 777888889999999999887 788765544567888885320 013467788776 579876544433 2445
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~e 757 (891)
.+ +++. +++++|+++++.|++
T Consensus 364 ~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 364 LIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp EEEEECC--SCHHHHHHHHHHHTT
T ss_pred EEEEEEc--CCHHHHHHHHHHHhh
Confidence 66 8876 489999999988753
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.62 E-value=6.7e-07 Score=98.42 Aligned_cols=137 Identities=13% Similarity=-0.002 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcc
Q psy852 55 CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFV 134 (891)
Q Consensus 55 ~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~ 134 (891)
..++++.+.+++.+.+|.+.+. +.+ .+++||+...+..+..+ ....
T Consensus 61 ~~~lr~~la~~l~~~~g~~~~~-------------~~i--------------~~t~g~~~al~~~~~~~-~~~~------ 106 (376)
T 3ezs_A 61 EESLRAAQRGFFKRRFKIELKE-------------NEL--------------ISTLGSREVLFNFPSFV-LFDY------ 106 (376)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCG-------------GGE--------------EEESSSHHHHHHHHHHH-TTTC------
T ss_pred CHHHHHHHHHHHHHHhCCCCCH-------------HHE--------------EECcCcHHHHHHHHHHH-cCCC------
Confidence 4689999999999999984221 111 14567764333222222 1110
Q ss_pred ccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC-
Q psy852 135 DEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN- 213 (891)
Q Consensus 135 ~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp- 213 (891)
....|++..-+|.+...++...+.+++.++.++++.+++ +|++.+.+.. .+|+++..+|.+|.+-|
T Consensus 107 ------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~~~------~~v~~~~p~nptG~~~~~ 173 (376)
T 3ezs_A 107 ------QNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKELQEV------DLVILNSPNNPTGRTLSL 173 (376)
T ss_dssp ------SSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHHHHC------SEEEECSSCTTTCCCCCH
T ss_pred ------CCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhccCC------CEEEEcCCCCCcCCCCCH
Confidence 012477778889999988887888999999998776777 7877776543 36666778999999977
Q ss_pred --HHHHHHHHHHcCCceeeeccccCCc
Q psy852 214 --LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 214 --l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+.+|+++|+++|+++++|.+|+++.
T Consensus 174 ~~l~~i~~~~~~~~~~li~De~~~~~~ 200 (376)
T 3ezs_A 174 EELISWVKLALKHDFILINDECYSEIY 200 (376)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred HHHHHHHHHHHHcCcEEEEEccchhhc
Confidence 6677778999999999999997643
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.61 E-value=5.6e-07 Score=99.82 Aligned_cols=249 Identities=12% Similarity=-0.001 Sum_probs=151.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC---C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK---N 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~---G 539 (891)
+|+ +++|+++++..++.+... +.-.|++..-+|.+...++...|.+++.+|.+.+ +
T Consensus 89 ~v~--~t~g~~~al~~~~~~l~~-------------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 147 (390)
T 1d2f_A 89 TVV--YGPSVIYMVSELIRQWSE-------------------TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGW 147 (390)
T ss_dssp GEE--EESCHHHHHHHHHHHSSC-------------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSE
T ss_pred HEE--EcCCHHHHHHHHHHHhcC-------------------CCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCcc
Confidence 455 788999999887765421 1124777778888998888888999999998654 3
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C--------CC-C-
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G--------IE-Y- 581 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G--------i~-~- 581 (891)
.+|+++|+++|++. ....++++. ..|++. |.++ +| | +. .
T Consensus 148 ~~d~~~l~~~l~~~---~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 224 (390)
T 1d2f_A 148 FCDMGKLEAVLAKP---ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGD 224 (390)
T ss_dssp ECCHHHHHHHHTST---TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSS
T ss_pred ccCHHHHHHHhccC---CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhh
Confidence 69999999999752 111222222 235442 3331 11 1 11 1
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhh
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSG 658 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G 658 (891)
.|. ..++||+++.| ..+|++++++++... .+.....+ ..+.. ....+.+++....+ +.+.
T Consensus 225 ~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~-~~~~~~~~------------~~~~~---~~~~~~~~a~~~~l~~~~~~ 287 (390)
T 1d2f_A 225 WAL-LTSGSKSFNIPALTGAYGIIENSSSRD-AYLSALKG------------RDGLS---SPSVLALTAHIAAYQQGAPW 287 (390)
T ss_dssp EEE-EECSHHHHTCGGGCCEEEEECSHHHHH-HHHHHHHT------------TSCCC---SCCHHHHHHHHHHHHHCHHH
T ss_pred Hhh-ccCccHhhcccChhheEEEECCHHHHH-HHHHHHhh------------hcccC---CCCHHHHHHHHHHHhcCHHH
Confidence 155 88999999744 468999987543322 12110000 00000 01123333333333 2445
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCe
Q psy852 659 LQKYIRRHCELAKLFEGKVRR-DPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQND 734 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~ 734 (891)
+++..++..++++++.+.|++ .|++++..+....++++++++. +....++.+.|. +.|+.+..+... .+..
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~ 362 (390)
T 1d2f_A 288 LDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPL-----NIDDNALQKALIEQEKVAIMPGYTYGEEGRG 362 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGG-----CCCHHHHHHHHHHTTCEECEEGGGGCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEcccc-----CCCHHHHHHHHHHHcCEEeeCccccCCCCCC
Confidence 677777888899999999988 7888775443333456777531 013567888888 579876554433 2345
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+ ++++. ++++++++++.|++++
T Consensus 363 ~~Ris~~~--~~~~l~~~l~~l~~~l 386 (390)
T 1d2f_A 363 FVRLNAGC--PRSKLEKGVAGLINAI 386 (390)
T ss_dssp EEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHHHH
Confidence 66 88775 4789999998888776
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=94.94 Aligned_cols=245 Identities=9% Similarity=0.029 Sum_probs=153.9
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~ 529 (891)
+.+++.+...+. +|+ +++|+++++..++.+. + .-.|++..-.|.+...++...|++
T Consensus 58 ~~la~~~~~~~~-~i~--~t~G~~~~l~~~~~~~-----~----------------gd~vl~~~p~~~~~~~~~~~~g~~ 113 (337)
T 3p1t_A 58 RKLAEHFSCPED-NLM--LVRGIDECFDRISAEF-----S----------------SMRFVTAWPGFDGYRARIAVSGLR 113 (337)
T ss_dssp HHHHHHHTSCGG-GEE--EESHHHHHHHHHHHHS-----T----------------TSEEEEESSSCSHHHHHHTTSCCE
T ss_pred HHHHHHhCcCHH-HEE--EeCCHHHHHHHHHHhc-----C----------------CCeEEEeCCCcHHHHHHHHHcCCE
Confidence 344444544333 566 6889899888776653 1 114778888999998888888999
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh----hc--------------CCC
Q psy852 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK----SQ--------------GIE 580 (891)
Q Consensus 530 v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~----ld--------------Gi~ 580 (891)
++.+|.++++.+|+++|+++.+ ...++++ +..|++. |.++ +| +..
T Consensus 114 ~~~v~~~~~~~~d~~~l~~~~~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~ivDea~~~~~~~~~~~~~~~ 187 (337)
T 3p1t_A 114 HFEIGLTDDLLLDPNDLAQVSR------DDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDYSSFRARGLAYG 187 (337)
T ss_dssp EEEECBCTTSSBCHHHHTTCCT------TEEEEEESSCTTTCCCCCHHHHHHHHHHCSEEEEECTTGGGSSCSSSCCCCB
T ss_pred EEEecCCCCCCCCHHHHHhhcC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCcEEEECCChhhccccccccccC
Confidence 9999999999999999987621 1222322 2245554 2210 11 112
Q ss_pred CccEEEEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-Hhh
Q psy852 581 YADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LSG 658 (891)
Q Consensus 581 ~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~G 658 (891)
..+-+..+.||+++ ....+|+++..++ .+ +.+..... .++ ...+.+.+....+. ...
T Consensus 188 ~~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~-~~l~~~~~-------------~~~------~~~~~~~a~~~~l~~~~~ 246 (337)
T 3p1t_A 188 ENELVFRSFSKSYGLAGLRLGALFGPSE-LI-AAMKRKQW-------------FCN------VGTLDLHALEAALDNDRA 246 (337)
T ss_dssp TTEEEEEESSSTTCCTTTCCEEEECCHH-HH-HHHHTTSC-------------TTC------SCHHHHHHHHHHHTCHHH
T ss_pred CCEEEEeeCchhccCcchheEEEEeCHH-HH-HHHHhhcC-------------CCC------CCHHHHHHHHHHhCCHHH
Confidence 34677889999997 4567788776432 22 22211000 000 01122223333332 234
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
+.+.+++..++++++.+.|++. ++++. ++..+.+.|.... ...+.+.|.+.|+.+..+........+ +
T Consensus 247 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~iRi 315 (337)
T 3p1t_A 247 REAHIAKTLAQRRRVADALRGL-GYRVA-SSEANFVLVENAA---------GERTLRFLRERGIQVKDAGQFGLHHHIRI 315 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCBC-CCSSSEEEEECTT---------THHHHHHHHHTTEECEEGGGGTCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-cCEEC-CCCCeEEEEEcCC---------HHHHHHHHHHCCeEEEECccCCCCCeEEE
Confidence 6777788888899999999887 67654 4556777777642 245677888899886655555444566 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~ 759 (891)
+++ +++|+++++++|+++.
T Consensus 316 s~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 316 SIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp ECC---CHHHHHHHHHHHHHHT
T ss_pred ecC---CHHHHHHHHHHHHHHh
Confidence 876 7999999999998764
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=96.84 Aligned_cols=261 Identities=8% Similarity=-0.011 Sum_probs=155.1
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+...+.=.++ +++|+++++..++.+... +.-.|++....|.+...++...|
T Consensus 68 l~~~la~~~~~~~~~~v~--~~~g~~~a~~~~~~~l~~-------------------~gd~Vl~~~~~~~~~~~~~~~~g 126 (375)
T 3op7_A 68 FKKSVSQLYTGVKPEQIL--QTNGATGANLLVLYSLIE-------------------PGDHVISLYPTYQQLYDIPKSLG 126 (375)
T ss_dssp HHHHHHTTSSSCCGGGEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESSCTHHHHHHHHTT
T ss_pred HHHHHHHHhccCChhhEE--EcCChHHHHHHHHHHhcC-------------------CCCEEEEeCCCchhHHHHHHHcC
Confidence 334444544322222455 678999999988765411 12357888888988888888889
Q ss_pred ceEEEecCCC--CCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC-------
Q psy852 528 VRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI------- 579 (891)
Q Consensus 528 v~v~~Vp~d~--~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi------- 579 (891)
.+++.+|.+. ++.+|+++|++++++.+ ..++++ +..|.+. |.++ +|.+
T Consensus 127 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~ 202 (375)
T 3op7_A 127 AEVDLWQIEEENGWLPDLEKLRQLIRPTT----KMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL 202 (375)
T ss_dssp CEEEEEEEEGGGTTEECHHHHHHHCCTTC----CEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS
T ss_pred CEEEEEeccccCCCCCCHHHHHHhhccCC----eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc
Confidence 9999998863 45699999999997532 223333 2344443 3331 2221
Q ss_pred --------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHH
Q psy852 580 --------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV 650 (891)
Q Consensus 580 --------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~ 650 (891)
...+-...+.+|.++.| ..+|+++. +++ +.+.+.....+ ++.. . ..+.+++.
T Consensus 203 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~-l~~~~~~~~~~-------------~~~~-~---~~~~~~~~ 263 (375)
T 3op7_A 203 DVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQ-VTDILRDYRDY-------------TMIC-A---GVFDDLVA 263 (375)
T ss_dssp CCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEEC-CHH-HHHHHTTTGGG-------------TTSC-C---CHHHHHHH
T ss_pred CCCchhhhcCCEEEEeEChhhcCCcccceEEEEe-CHH-HHHHHHHHHhh-------------hccC-C---CcHHHHHH
Confidence 11235677899999845 56788887 333 22222211110 0110 0 12222333
Q ss_pred HHHHH--HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHH-HhCCcEEEee
Q psy852 651 IRTYG--LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDI-NASGRLHMVP 727 (891)
Q Consensus 651 L~~lG--~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L-~~~G~~~~s~ 727 (891)
...+. ...+++..+...++++++.+.|++.+++++..+.....+.+.+... ....++.+.| .+.|+.+..+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ll~~~gi~v~~g 337 (375)
T 3op7_A 264 QLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVD------MPMEDFCLQLLQEHGVLLVPG 337 (375)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCS------SCHHHHHHHHHHHHCEECEEG
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCC------CCHHHHHHHHHHhCCEEEeCh
Confidence 32222 2334555666688899999999988888877554444445555321 2345677777 5789886555
Q ss_pred ccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 728 s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
........+ ++++. +.++|+++++.|++.+.
T Consensus 338 ~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~l~ 369 (375)
T 3op7_A 338 NRFERDGYVRLGFAC--EQETLIKGLEKLSQFLR 369 (375)
T ss_dssp GGGTCTTEEEECCCS--CHHHHHHHHHHHHHHHG
T ss_pred hhhCCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 544444556 77653 45899999999988763
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.7e-07 Score=98.62 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=73.5
Q ss_pred EEecCCCChHHHHHHHHcCCe-EEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVR-LKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~-v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~ 218 (891)
|++..-+|.+....+...+.+ ++.++.+ +++.+|+++|++.+++. +..+.+|+.+..+|.||.+ +++++|+
T Consensus 133 Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~ 209 (412)
T 1ajs_A 133 VYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIA 209 (412)
T ss_dssp EEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred EEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHH
Confidence 667777888888888777788 9999984 56889999999999753 1124677788899999999 4566899
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|+++|+++++|.+|.++.
T Consensus 210 ~~~~~~~~~li~De~y~~~~ 229 (412)
T 1ajs_A 210 SVMKRRFLFPFFDSAYQGFA 229 (412)
T ss_dssp HHHHHHTCEEEEEESCTTTT
T ss_pred HHHHHCCCEEEEEccccccc
Confidence 99999999999999986543
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.7e-07 Score=97.97 Aligned_cols=235 Identities=8% Similarity=0.088 Sum_probs=147.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+++ +++|+++++..++.+... +.-.|++..-+|.+...++...|.+++.+| +|
T Consensus 91 ~v~--~~~g~~~a~~~~~~~~~~-------------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~------~d 143 (370)
T 2z61_A 91 NII--ITGGSSLGLFFALSSIID-------------------DGDEVLIQNPCYPCYKNFIRFLGAKPVFCD------FT 143 (370)
T ss_dssp GEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEESSCCTHHHHHHHHTTCEEEEEC------SS
T ss_pred hEE--ECCChHHHHHHHHHHhcC-------------------CCCEEEEeCCCchhHHHHHHHcCCEEEEeC------CC
Confidence 455 788999999988876521 112578888889999998888888988888 89
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-------hhhh--------------hc----------CCCCccEEEEc
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-------CYRK--------------SQ----------GIEYADSFNVN 588 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-------c~~~--------------ld----------Gi~~aDSIs~d 588 (891)
+++|++++++.. ..++++ +..|.+. |.++ .+ +....|.+..+
T Consensus 144 ~~~l~~~l~~~~----~~v~~~~p~nptG~~~~~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s 219 (370)
T 2z61_A 144 VESLEEALSDKT----KAIIINSPSNPLGEVIDREIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILING 219 (370)
T ss_dssp HHHHHHHCCSSE----EEEEEESSCTTTCCCCCHHHHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEE
T ss_pred HHHHHHhcccCc----eEEEEcCCCCCcCcccCHHHHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEec
Confidence 999999886521 122333 2245442 3321 11 12245788999
Q ss_pred CcccCCcc-cccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCcccccccccchHHHHHHHHH---HHhhHHHHH
Q psy852 589 VNKWLLTA-FDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY---GLSGLQKYI 663 (891)
Q Consensus 589 ~HK~L~~P-~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l---G~~G~~~~i 663 (891)
+||+++.| ..+|+++.+++ +.+.+.. ...+ .++ ...+.++++...+ +.+.+++..
T Consensus 220 ~sK~~~~~G~r~G~~~~~~~--~~~~~~~~~~~~------------~~~------~~~~~~~a~~~~l~~~~~~~~~~~~ 279 (370)
T 2z61_A 220 FSKLYAMTGWRIGYVISNDE--IIEAILKLQQNL------------FIS------APTISQYAALKAFEKETEREINSMI 279 (370)
T ss_dssp STTTTTCGGGCCEEEECCHH--HHHHHHHHHHHH------------TSS------SCHHHHHHHGGGGSHHHHHHHHHHH
T ss_pred ChhccCCccceEEEEEECHH--HHHHHHHHHhhc------------ccC------CCHHHHHHHHHHHhccCHHHHHHHH
Confidence 99999744 34888887663 2222211 0000 001 1122233333333 455677778
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc--CCeEE-EEe
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE--QNDEV-FEL 739 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~--g~~~l-~sv 739 (891)
++..++++++.+.|++. ++++..+.....+.+++.+ ...++.+.|. +.|+.+..+.... +...+ +++
T Consensus 280 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~ 350 (370)
T 2z61_A 280 KEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIGE--------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISY 350 (370)
T ss_dssp HHHHHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCSS--------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEEC
T ss_pred HHHHHHHHHHHHHHHHc-CCeecCCCcceEEEEecCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEE
Confidence 88889999999999887 7776543333344455532 3457888886 6798755443322 24456 888
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei~ 759 (891)
+ +++++|+++++.|++..
T Consensus 351 ~--~~~~~i~~~~~~l~~~l 368 (370)
T 2z61_A 351 A--NSYENIKEGLERIKEFL 368 (370)
T ss_dssp C--SCHHHHHHHHHHHHHHH
T ss_pred e--CCHHHHHHHHHHHHHHH
Confidence 7 69999999999988764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.8e-06 Score=93.80 Aligned_cols=91 Identities=10% Similarity=-0.094 Sum_probs=64.8
Q ss_pred EEEecCCCChHHHHHHHHcC-------------CeEEEEecC------CCCcccHHHHHHHHHhhhhcCCcceEEEeecc
Q psy852 144 MAYCSKEAHSCVEKAAMMAF-------------VRLKILEPD------DKNSLRGATLRQVMQQDETMGYIPFFVSTTLG 204 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~-------------~~v~~V~~d------~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~G 204 (891)
+++....-|.+..-++.+.+ ..+..++++ ..+.+|+++|++.+++.. ..+.+|+++-.
T Consensus 137 vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~vi~~p~ 213 (429)
T 1s0a_A 137 FLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR---HEIAAVIIEPI 213 (429)
T ss_dssp EEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT---TTEEEEEECSS
T ss_pred EEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCC---CCEEEEEEeec
Confidence 44455566766554443321 145667664 235799999999997521 12457777777
Q ss_pred -cCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 205 -TTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 205 -tt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
++.+|.+.| +++|+++|+++|++||+|.+|.|+
T Consensus 214 ~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~ 251 (429)
T 1s0a_A 214 VQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGF 251 (429)
T ss_dssp EECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCC
Confidence 889998777 999999999999999999999664
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-06 Score=94.22 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 177 id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++|+++++++ +.+|+++..++.+|.+.| +++|+++|+++|+++++|.+++|+
T Consensus 160 ~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 218 (375)
T 2eh6_A 160 NDIDSVYKLLDEE------TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGI 218 (375)
T ss_dssp TCHHHHHTTCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred chHHHHHHHhcCC------eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 4899999887643 457777888999999988 999999999999999999999763
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.56 E-value=8.3e-07 Score=98.58 Aligned_cols=244 Identities=11% Similarity=0.024 Sum_probs=149.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccc-eEEEecccchHHHHHHHHHcCceEEEecCCC-CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSK-LMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~-~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~ 540 (891)
+|+ +++|+++++..++.+... +. -.|++..-.|.+...++...|.+++.+|.++ ++.
T Consensus 101 ~i~--~~~g~~~al~~~~~~l~~-------------------~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~ 159 (398)
T 3ele_A 101 NLY--MTMGAAASLSICFRALTS-------------------DAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQ 159 (398)
T ss_dssp GEE--EESSHHHHHHHHHHHHCC-------------------STTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSS
T ss_pred HEE--EccCHHHHHHHHHHHHcC-------------------CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCc
Confidence 566 788999999988776411 11 3477778889999999888999999999975 468
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhh------h-----hc---------C--------
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYR------K-----SQ---------G-------- 578 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~------~-----ld---------G-------- 578 (891)
+|+++|++++++.++ .++++ +..|++. |.+ + +| |
T Consensus 160 ~d~~~l~~~l~~~~~----~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 235 (398)
T 3ele_A 160 IDFDALEERINAHTR----GVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK 235 (398)
T ss_dssp CCHHHHHHTCCTTEE----EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred CCHHHHHHHhCcCCC----EEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh
Confidence 999999999875321 22222 2245443 433 2 11 1
Q ss_pred CCCccEEEEcCcccCC-cccccEEEEEeCCccc----hhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHH
Q psy852 579 IEYADSFNVNVNKWLL-TAFDSSCLWVADRYKL----TSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT 653 (891)
Q Consensus 579 i~~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L----~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~ 653 (891)
....+-+..+.||+++ ....+|+++.++.... ...+.. +.... ...+ ...+.+++....
T Consensus 236 ~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~~~------~~~~~~~a~~~~ 299 (398)
T 3ele_A 236 YYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCG---AGRAL-------GYVC------APSLFQKMIVKC 299 (398)
T ss_dssp TCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHH---HHHHT-------TCCC------SCHHHHHHHTTC
T ss_pred hcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHH---Hhhhc-------cccC------CCHHHHHHHHHH
Confidence 1112466778999997 4577899988766211 111100 00000 0000 001222222222
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCC
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQN 733 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~ 733 (891)
+.... ..++..++++++.+.|++. ++++..+.....+++++++. ....+.+.|.+.|+.+..+......
T Consensus 300 l~~~~---~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g~~~~~~ 368 (398)
T 3ele_A 300 QGATG---DINAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALED-------DSNAFCEKAKEEDVLIVAADGFGCP 368 (398)
T ss_dssp TTCCC---CHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSS-------CHHHHHHHHHTTTEECEESGGGTCT
T ss_pred hcCHH---HHHHHHHHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCC-------CHHHHHHHHHHCCEEEeCccccCCC
Confidence 21111 2345566778888888775 66766544444477777532 3567888888899886655555445
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..+ ++++ +++++|+++++.|++++.
T Consensus 369 ~~iRis~~--~~~e~i~~~l~~l~~~l~ 394 (398)
T 3ele_A 369 GWVRISYC--VDREMIKHSMPAFEKIYK 394 (398)
T ss_dssp TEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 566 8875 699999999999998763
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-07 Score=96.46 Aligned_cols=248 Identities=9% Similarity=0.050 Sum_probs=140.7
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH---
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM--- 524 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~--- 524 (891)
+.+.+++.+.. + +.+ +.++|++++..++.+.. + +...|+++..+|.+...++.
T Consensus 3 l~~~la~~~g~-~--~~i--~~~sG~~a~~~~~~~~~----~---------------~g~~v~~~~~~~~~~~~~~~~~~ 58 (331)
T 1pff_A 3 LEGKIAKLEHA-E--ACA--ATASGMGAIAASVWTFL----K---------------AGDHLISDDCLYGCTHALFEHQL 58 (331)
T ss_dssp HHHHHHHHHTC-S--EEE--EESSHHHHHHHHHHHHC----C---------------TTCEEEEESCCCHHHHHHHHTHH
T ss_pred HHHHHHHHhCC-C--eEE--EeCChHHHHHHHHHHhc----C---------------CCCEEEEcCCCcchHHHHHHHHH
Confidence 33455555554 2 222 33455899888876541 0 12247888889988877653
Q ss_pred -HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh-h-----hcCC-------
Q psy852 525 -MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR-K-----SQGI------- 579 (891)
Q Consensus 525 -l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~-~-----ldGi------- 579 (891)
..|++++.+|. +|+++|+++|++++ ..+++.. ..|... |.+ + +|.+
T Consensus 59 ~~~g~~~~~~~~-----~d~~~l~~~i~~~~----~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~ 129 (331)
T 1pff_A 59 RKFGVEVDFIDM-----AVPGNIEKHLKPNT----RIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT 129 (331)
T ss_dssp HHTTCEEEEECT-----TSTTHHHHTCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC
T ss_pred HhcCCEEEEeCC-----CCHHHHHHhhcCCC----eEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccC
Confidence 46888888876 47888988886432 1222222 234443 544 3 2221
Q ss_pred ----CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCcccccccccchHHHHHHH
Q psy852 580 ----EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIR 652 (891)
Q Consensus 580 ----~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~ 652 (891)
..+|.+..++||++++|.+ +|+++.++++.+. .+.. ...| ++ -....+..|..+.
T Consensus 130 ~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~-~l~~~~~~~-------------~~----~~~~~~~~~~~~~ 191 (331)
T 1pff_A 130 NPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAK-VKSQGIKDI-------------TG----AIISPHDAWLITR 191 (331)
T ss_dssp CGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHH-HHHTCCCCC-------------CC----CCCCHHHHHHHHH
T ss_pred ChhhcCCcEEEEECccccCCCCCceEEEEEeCcHHHHH-HHHHHHHhh-------------cC----CCCCHHHHHHHHc
Confidence 2479999999999999987 7888887633222 2211 1110 00 0111233444333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccC--------------CCcEEeCC---CceeEEEEEecCCcchhhhhhHHHHHH
Q psy852 653 TYGLSGLQKYIRRHCELAKLFEGKVRRD--------------PRFEISND---VRLGLVCFRLRSENNLIADQNNRKLLE 715 (891)
Q Consensus 653 ~lG~~G~~~~i~~~~~lA~~L~~~L~~~--------------~~~eil~~---~~~~iV~Fr~~~~~~~~~d~ln~~L~~ 715 (891)
.+ +.+....++..++++.+.+.|++. +++++..+ ...++++|.+.+ .+.+..
T Consensus 192 ~l--~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 260 (331)
T 1pff_A 192 GT--LTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG---------LEKAKK 260 (331)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---------HHHHHH
T ss_pred Cc--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC---------HHHHHH
Confidence 22 223333444444555555544432 33333221 135789999851 245677
Q ss_pred HHHhCCcEEEeec-----------c-------------c--cCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 716 DINASGRLHMVPA-----------S-------------Q--EQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 716 ~L~~~G~~~~s~s-----------~-------------~--~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
.|.+.|++....+ . . .....+ ++++..+|+++|+.++++|++
T Consensus 261 ~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 261 VLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp HHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred HHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 7888888543221 0 0 113567 999999999999999998875
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.4e-07 Score=100.14 Aligned_cols=232 Identities=12% Similarity=0.129 Sum_probs=131.7
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---- 523 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa---- 523 (891)
+.+.+++.+... . .++ .++|++++..++.+.. + +.-.|+++..+|.+...++
T Consensus 63 l~~~la~~~g~~-~-~v~---~~sGt~A~~~~l~~~~----~---------------~gd~vi~~~~~~~~~~~~~~~~~ 118 (421)
T 2ctz_A 63 LEKRLAALEGGK-A-ALA---TASGHAAQFLALTTLA----Q---------------AGDNIVSTPNLYGGTFNQFKVTL 118 (421)
T ss_dssp HHHHHHHHHTCS-E-EEE---ESSHHHHHHHHHHHHC----C---------------TTCEEEECSCCCHHHHHHHHTHH
T ss_pred HHHHHHHHhCCC-c-eEE---ecCHHHHHHHHHHHHh----C---------------CCCEEEEeCCCchHHHHHHHHHH
Confidence 334455555442 2 233 3456999988876641 0 1235888999999888776
Q ss_pred HHcCceEEEe-cCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc--------hhhh-----hcCC-------
Q psy852 524 MMAFVRLKIL-EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS--------CYRK-----SQGI------- 579 (891)
Q Consensus 524 ~l~gv~v~~V-p~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c~~~-----ldGi------- 579 (891)
...|++++.+ |.+ |+++|+++|++.++ .+++... .|... |+++ +|++
T Consensus 119 ~~~g~~~~~~~~~~-----d~~~l~~~i~~~~~----~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~ 189 (421)
T 2ctz_A 119 KRLGIEVRFTSREE-----RPEEFLALTDEKTR----AWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL 189 (421)
T ss_dssp HHTTCEEEECCTTC-----CHHHHHHHCCTTEE----EEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS
T ss_pred HHcCCEEEEECCCC-----CHHHHHHhhccCCe----EEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc
Confidence 4578899998 775 89999999876321 2222222 34333 4331 2221
Q ss_pred -----CCccEEEEcCcccCCcccc-cEEEEEeCC-ccc----hhhhc-cCCCccccCCCCCccccCC-------c-cccc
Q psy852 580 -----EYADSFNVNVNKWLLTAFD-SSCLWVADR-YKL----TSALV-VDPLYLQHGHEGAIDYRHW-------G-IPLS 639 (891)
Q Consensus 580 -----~~aDSIs~d~HK~L~~P~g-~G~llvR~~-~~L----~~~l~-~~~~Yl~~~~e~~~~~~~~-------t-i~~S 639 (891)
..+|.+.+++||++++|.+ +|.++++++ ..+ .+.+. ....|........+....+ . ...+
T Consensus 190 ~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g 269 (421)
T 2ctz_A 190 LRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQG 269 (421)
T ss_dssp CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHC
T ss_pred CCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcC
Confidence 1379999999999999874 788888632 111 11111 1111110000000000000 0 0011
Q ss_pred ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC------------------CceeEEEEEecCC
Q psy852 640 RRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND------------------VRLGLVCFRLRSE 701 (891)
Q Consensus 640 Rr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~------------------~~~~iV~Fr~~~~ 701 (891)
-....+..|+.++ |.+.+..++++..++++++.+.|++.|+++++.. ...++++|.+.+.
T Consensus 270 ~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~ 347 (421)
T 2ctz_A 270 QALGPFEAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGG 347 (421)
T ss_dssp CCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTH
T ss_pred CCCCHHHHHHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCC
Confidence 1223445555543 5666777888888999999999999999987631 2357999999642
Q ss_pred cchhhhhhHHHHHHHHHh
Q psy852 702 NNLIADQNNRKLLEDINA 719 (891)
Q Consensus 702 ~~~~~d~ln~~L~~~L~~ 719 (891)
......+.+.|..
T Consensus 348 -----~~~~~~~~~~l~~ 360 (421)
T 2ctz_A 348 -----YEAAKRFISRLKL 360 (421)
T ss_dssp -----HHHHHHHHHTCSS
T ss_pred -----HHHHHHHHHhCCc
Confidence 1233455555543
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=96.56 Aligned_cols=83 Identities=14% Similarity=-0.004 Sum_probs=67.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|++..-+|.+....+...|.+++.++.++++.+ ++|++.+ .+-+|+++..+|.+|.+-|+++|.++|++
T Consensus 108 ~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~ 177 (360)
T 3hdo_A 108 EIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRI--AGFPERY--------EGKVFFLTTPNAPLGPSFPLEYIDELARR 177 (360)
T ss_dssp EEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSB--TTCCSSB--------CSSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCH--HHHHhhc--------CCCEEEEeCCCCCCCCCcCHHHHHHHHHH
Confidence 3777788999998888777889999999888776 4443221 12367777889999999999999999999
Q ss_pred cCCceeeeccccC
Q psy852 224 FDVWLHVDGAYAG 236 (891)
Q Consensus 224 ~~~~lHvDaA~GG 236 (891)
+|+++++|.+|++
T Consensus 178 ~~~~li~De~~~~ 190 (360)
T 3hdo_A 178 CAGMLVLDETYAE 190 (360)
T ss_dssp BSSEEEEECTTGG
T ss_pred CCCEEEEECChHh
Confidence 9999999999964
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-06 Score=96.44 Aligned_cols=244 Identities=10% Similarity=0.003 Sum_probs=148.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +++|+++++..++.+.-. +.-.|+++.-.|.+...++...|.+++.+|.++ ++.
T Consensus 93 ~i~--~t~g~~~al~~~~~~l~~-------------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 151 (385)
T 1b5p_A 93 ETI--VTVGGSQALFNLFQAILD-------------------PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFV 151 (385)
T ss_dssp GEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred HEE--EcCChHHHHHHHHHHhcC-------------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCC
Confidence 455 788999999888765411 122477777788888888888899999999975 468
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hcCC--------C---------CccE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQGI--------E---------YADS 584 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ldGi--------~---------~aDS 584 (891)
+|+++|+++|++.+ ..++++. ..|++. |.++ .|.+ + ..+-
T Consensus 152 ~d~~~l~~~l~~~~----~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i 227 (385)
T 1b5p_A 152 PDPERVRRAITPRT----KALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTL 227 (385)
T ss_dssp CCHHHHHTTCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEE
T ss_pred CCHHHHHHhcCCCC----EEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEE
Confidence 99999999886531 1223322 256653 3331 1110 1 1234
Q ss_pred EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH-----HHhh
Q psy852 585 FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY-----GLSG 658 (891)
Q Consensus 585 Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l-----G~~G 658 (891)
+..+++|+++.| ..+|+++.+++ +.+.+.....+ ..++ ...+.++++...+ +.+.
T Consensus 228 ~~~s~SK~~~~~G~RiG~~~~~~~--~~~~l~~~~~~-----------~~~~------~~~~~~~a~~~~l~~~~~~~~~ 288 (385)
T 1b5p_A 228 TVNGAAKAFAMTGWRIGYACGPKE--VIKAMASVSRQ-----------STTS------PDTIAQWATLEALTNQEASRAF 288 (385)
T ss_dssp EEEESTTTTTCGGGCCEEEECCHH--HHHHHHHHHHT-----------TTCS------CCHHHHHHHHHHHHCHHHHHHH
T ss_pred EEEechhhcCCcccceEEEEeCHH--HHHHHHHHHhh-----------ccCC------CCHHHHHHHHHHHhCCCcchHH
Confidence 566899998755 33899887542 22222110000 0000 1123344443333 3455
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
+++..++..+.++++.+.|++. ++++..+.....+...+... +....++.+.|.+.|+.+..+........+ +
T Consensus 289 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRi 362 (385)
T 1b5p_A 289 VEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI-----APDEVRAAERLLEAGVAVVPGTDFAAFGHVRL 362 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTT-----CSSHHHHHHHHHHTTEECEESGGGTCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecCCC-----CCCHHHHHHHHHHCCeEEecccccCCCCeEEE
Confidence 6677778888899999999887 77765443333444555321 123567888888889886655544324456 8
Q ss_pred EecCCCCHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei 758 (891)
++. +++++|+++++.|++.
T Consensus 363 s~~--~~~~~i~~~l~~l~~~ 381 (385)
T 1b5p_A 363 SYA--TSEENLRKALERFARV 381 (385)
T ss_dssp ECC--SCHHHHHHHHHHGGGG
T ss_pred Eec--CCHHHHHHHHHHHHHH
Confidence 876 7888999888877654
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-06 Score=94.07 Aligned_cols=54 Identities=15% Similarity=-0.010 Sum_probs=47.3
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++++++. +.+|+++..+|.+|.+.| +++|+++|+++|+++++|.+++|+
T Consensus 171 d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~ 228 (392)
T 3ruy_A 171 DLEALKAAITPN------TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGL 228 (392)
T ss_dssp CHHHHHHHCCTT------EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT
T ss_pred cHHHHHHHhccC------eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCC
Confidence 799999988743 457788779999999999 999999999999999999999654
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=97.17 Aligned_cols=257 Identities=15% Similarity=0.123 Sum_probs=148.6
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++++.+++.+.. + +++ +++||++++..++.+++...... . ..++-+|+.+...|.+...++.+
T Consensus 85 ~~l~~~la~~~g~-~--~v~--~~~gg~~a~~~al~~~~~~~~~~-~----------~~~~~vi~~~~~yh~~~~~~~~~ 148 (397)
T 2ord_A 85 MELAELLSKNTFG-G--KVF--FANTGTEANEAAIKIARKYGKKK-S----------EKKYRILSAHNSFHGRTLGSLTA 148 (397)
T ss_dssp HHHHHHHHHTTTS-C--EEE--EESSHHHHHHHHHHHHHHHHHHH-C----------TTCCEEEEEBTCCCCSSHHHHHH
T ss_pred HHHHHHHHHhcCC-C--eEE--EeCCHHHHHHHHHHHHHHHhhcC-C----------CCCceEEEEcCCcCCCchhhhhc
Confidence 3445556655542 2 445 67899999999988876532210 0 00123566666777777767666
Q ss_pred cCce------------EEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCc-cc-----------hhhh---
Q psy852 526 AFVR------------LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGT-TS-----------CYRK--- 575 (891)
Q Consensus 526 ~gv~------------v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGT-T~-----------c~~~--- 575 (891)
.+.+ ++.+|.+ |+++|+++|++.++ .+++ .+..|+ +. |.++
T Consensus 149 ~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~~~----~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~ 219 (397)
T 2ord_A 149 TGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSEDVC----AVFLEPIQGESGIVPATKEFLEEARKLCDEYDAL 219 (397)
T ss_dssp SBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTTEE----EEEECSEECTTTCEECCHHHHHHHHHHHHHHTCE
T ss_pred cCChhhccccCCCCCCeeEecCC-----CHHHHHHHhhcCeE----EEEEecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 5543 6777763 89999998874211 1222 234576 21 4331
Q ss_pred --hc----CC-------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 576 --SQ----GI-------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 576 --ld----Gi-------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
+| |+ ...|.+++ +|++++++.+|+++.+++. . .+.. . .. ...++
T Consensus 220 li~De~~~~~~~~g~~~~~~~~~~~~d~~s~--sK~~~~G~r~G~~~~~~~~-~--~l~~--~--~~-------~~~~~- 282 (397)
T 2ord_A 220 LVFDEVQCGMGRTGKLFAYQKYGVVPDVLTT--AKGLGGGVPIGAVIVNERA-N--VLEP--G--DH-------GTTFG- 282 (397)
T ss_dssp EEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECSTT-C--CCCT--T--SS-------CCSST-
T ss_pred EEEEecccCCccCccchhhhhhCCCCCeeee--ccccCCCcCeEEEEEchHh-c--ccCC--C--Cc-------CCCCC-
Confidence 11 11 12577766 7999977889999987652 1 1210 0 00 00111
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC-CcEEe--CCCceeEEEEEecCCcchhhhhhHHHH
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP-RFEIS--NDVRLGLVCFRLRSENNLIADQNNRKL 713 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~-~~eil--~~~~~~iV~Fr~~~~~~~~~d~ln~~L 713 (891)
. -.+....+..+|+.+.. ++..++..++++++.+.|++.+ ++.++ .++..++++|++.+. ....++
T Consensus 283 -~-~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~l 351 (397)
T 2ord_A 283 -G-NPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREE------VSNREV 351 (397)
T ss_dssp -T-CHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTT------SCHHHH
T ss_pred -C-CHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECCh------HHHHHH
Confidence 0 01112223334444332 3456677778888888887642 12211 123446788888532 135678
Q ss_pred HHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 714 LEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 714 ~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+.|.+.|+.+..+ +...+ ++++..++++|++++++.|++++
T Consensus 352 ~~~l~~~gi~v~~~----~~~~iRis~~~~~~~e~i~~~~~~l~~~l 394 (397)
T 2ord_A 352 ATKCFENKLLVVPA----GNNTIRFLPPLTVEYGEIDLAVETLKKVL 394 (397)
T ss_dssp HHHHHHTTEECEEE----TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEccC----CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 88888899874433 24456 88877889999999999998775
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.1e-06 Score=95.46 Aligned_cols=265 Identities=9% Similarity=-0.006 Sum_probs=148.8
Q ss_pred HHH-HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-HHHHH-
Q psy852 447 ELA-KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC-VEKAA- 523 (891)
Q Consensus 447 elA-r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S-v~Kaa- 523 (891)
+++ +++++.+.. +...+ ++++|+++|..++.+++. +.-.|+++..+|.+ +....
T Consensus 94 ~~a~~~la~~~g~-~~~~v---~~~sGs~a~~~a~~~~~~-------------------~Gd~Vl~~~~~~~~~~~~~~~ 150 (447)
T 3h7f_A 94 NLARDRAKALFGA-EFANV---QPHSGAQANAAVLHALMS-------------------PGERLLGLDLANGGHLTHGMR 150 (447)
T ss_dssp HHHHHHHHHHHTC-SEEEC---CCSSHHHHHHHHHHHHCC-------------------TTCEEEEECGGGTCCGGGTCT
T ss_pred HHHHHHHHHHcCC-CceEE---EeCCHHHHHHHHHHHhcC-------------------CCCEEEecCcccccccchhhh
Confidence 345 455555543 22222 256778999887766422 11246666666655 21111
Q ss_pred -HH--cCceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEE-ecCCccc--------hhhh-----hcC-------
Q psy852 524 -MM--AFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVS-TTLGTTS--------CYRK-----SQG------- 578 (891)
Q Consensus 524 -~l--~gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~Vv-ataGTT~--------c~~~-----ldG------- 578 (891)
.+ ....++.+|.+ +++.+|+++|++++++... ..+++. ...++.. |.++ +|.
T Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~---~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~ 227 (447)
T 3h7f_A 151 LNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRP---KVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLV 227 (447)
T ss_dssp TSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCC---SEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHH
T ss_pred hhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCC---eEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhh
Confidence 12 23456677776 5689999999999976321 122332 2223332 4431 121
Q ss_pred --------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCccccccc-ccchHHH
Q psy852 579 --------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLW 648 (891)
Q Consensus 579 --------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW 648 (891)
++.+|.++.++||++++|.+ |+++.++. +.+.+. ....+.. ++-. .....+.
T Consensus 228 ~~g~~~~~~~~~di~~~s~sK~l~G~~g-G~i~~~~~--~~~~l~~~~~~~~~---------------~~~~~~~~~a~~ 289 (447)
T 3h7f_A 228 AAGLHPSPVPHADVVSTTVHKTLGGGRS-GLIVGKQQ--YAKAINSAVFPGQQ---------------GGPLMHVIAGKA 289 (447)
T ss_dssp HTTSSCCSTTTCSEEEEESSGGGCCCSC-EEEEECGG--GHHHHHHHHTTTTC---------------SSCCHHHHHHHH
T ss_pred cCCCCCCCCCCCcEEEecCCcCCCCCCe-EEEEECHH--HHHHHhhhcCCccc---------------CCccHHHHHHHH
Confidence 34579999999999988876 77776553 222221 1001100 0000 1122333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC----CCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD----PRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~----~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
.++.....+++.+..++..++++++.+.|++. ++++++.. ...+.+.+.+.+.+ .....+.+.|.+.|++
T Consensus 290 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~GI~ 364 (447)
T 3h7f_A 290 VALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSP-----LDGQAAEDLLHEVGIT 364 (447)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSS-----CCHHHHHHHHHHTTEE
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCC-----CCHHHHHHHHHHCCeE
Confidence 34444444577888899999999999999876 57888753 34566767765431 1234556667777877
Q ss_pred EEe---ec---cccCCeEE-EEecC----CCCHHHHHHHHHHHHHHHH
Q psy852 724 HMV---PA---SQEQNDEV-FELQE----RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 724 ~~s---~s---~~~g~~~l-~sv~~----~tT~edId~li~~L~ei~~ 760 (891)
... +. .......+ +++.. .++++|++++++.|++++.
T Consensus 365 v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~ 412 (447)
T 3h7f_A 365 VNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA 412 (447)
T ss_dssp CBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred EecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 431 10 01111224 65432 4789999999999998764
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-06 Score=95.51 Aligned_cols=269 Identities=9% Similarity=-0.022 Sum_probs=150.7
Q ss_pred HHHHhhccCCccccccCCCCCcchhHH--HHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCc
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIF--VCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV 528 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~--~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv 528 (891)
.+++.+...+. +|+ +++|+++++. .++.+..... ... ..++ ....-.|++..-+|......+...|.
T Consensus 78 ~ia~~~~~~~~-~i~--~t~G~~~al~~~~~~~~l~~~~--~g~-~~~~-----~~~gd~Vlv~~p~y~~~~~~~~~~g~ 146 (423)
T 3ez1_A 78 LFAGYLDVKAE-NVL--VWNNSSLELQGLVLTFALLHGV--RGS-TGPW-----LSQTPKMIVTVPGYDRHFLLLQTLGF 146 (423)
T ss_dssp HHHHHTTSCGG-GEE--ECSSCHHHHHHHHHHHHHHTCC--TTC-SSCG-----GGGCCEEEEEESCCHHHHHHHHHHTC
T ss_pred HHHHHhCCChh-hEE--EeCCcHHHHHHHHHHHHHhccC--CCc-cccc-----cCCCCEEEEcCCCcHHHHHHHHHcCC
Confidence 33444443344 666 7889999986 5554432100 000 0000 00023577888889888888888899
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE----ecCCccc-----------h-hhh-----hcC---------
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS----TTLGTTS-----------C-YRK-----SQG--------- 578 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~-----------c-~~~-----ldG--------- 578 (891)
+++.+|.+++| +|+++|+++|++.. +...++++ +..|++. | .++ +|.
T Consensus 147 ~~~~v~~~~~g-~d~~~l~~~l~~~~--~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~ 223 (423)
T 3ez1_A 147 ELLTVDMQSDG-PDVDAVERLAGTDP--SVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVE 223 (423)
T ss_dssp EEEEEEEETTE-ECHHHHHHHHHSCT--TEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCS
T ss_pred EEEeccCCCCC-CCHHHHHHHHhhCC--CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCC
Confidence 99999998776 99999999996211 11122222 2245543 5 432 111
Q ss_pred -----------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc
Q psy852 579 -----------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR 641 (891)
Q Consensus 579 -----------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr 641 (891)
....+-+..+.+|+++....+|+++..++ +.+.+.....+ . .-.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~--~~~~~~~~~~~-------------~----~~~ 284 (423)
T 3ez1_A 224 EDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSED--NIRWLSKYLGA-------------Q----SIG 284 (423)
T ss_dssp SSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHH--HHHHHHHHHHH-------------S----CSC
T ss_pred CCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHH--HHHHHHHHHhh-------------h----ccC
Confidence 01123556789998777788898887643 22222110000 0 001
Q ss_pred ccchHHHHHHHHHHH--hhHHHHHH----HHHHH----HHHHHHHhccCC-CcEEeCCCceeEEEEEecCCcchhhhhhH
Q psy852 642 FRSLKLWFVIRTYGL--SGLQKYIR----RHCEL----AKLFEGKVRRDP-RFEISNDVRLGLVCFRLRSENNLIADQNN 710 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~--~G~~~~i~----~~~~l----A~~L~~~L~~~~-~~eil~~~~~~iV~Fr~~~~~~~~~d~ln 710 (891)
...+.+++....+.. ..+.+.++ ...+. .+.|.+.|...+ .+++..+...+.+++++.+. ..
T Consensus 285 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-------~~ 357 (423)
T 3ez1_A 285 PNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-------VA 357 (423)
T ss_dssp CCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-------CH
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-------cH
Confidence 122334444444443 33333332 22223 344444454454 46666555566778888642 35
Q ss_pred HHHHHHHHhCCcEEEe-eccc-----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 711 RKLLEDINASGRLHMV-PASQ-----EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 711 ~~L~~~L~~~G~~~~s-~s~~-----~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+.+.+.|.+.|+.+.. +... .+...+ +++... ++++|+++++.|++++.
T Consensus 358 ~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~ 413 (423)
T 3ez1_A 358 DRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIR 413 (423)
T ss_dssp HHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH
Confidence 6788888889987544 2222 234566 888655 99999999999998874
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.5e-06 Score=94.82 Aligned_cols=92 Identities=13% Similarity=0.004 Sum_probs=75.1
Q ss_pred EEEecCCCChHHHHHHHH-cCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMM-AFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~-~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-+|.+....+.. .+.+++.+++++ ++.+|+++|++.+++. +..+.+|+++..+|.+|.+-| +++|+
T Consensus 139 ~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~ 215 (430)
T 2x5f_A 139 TILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIV 215 (430)
T ss_dssp EEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred EEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHH
Confidence 377778889999888877 788999999876 4689999999999762 122456666777999999998 88999
Q ss_pred HHHHH-----cCCceeeeccccCCc
Q psy852 219 PVAKE-----FDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~-----~~~~lHvDaA~GG~~ 238 (891)
++|++ +|+++++|.+|+++.
T Consensus 216 ~~~~~~~~~~~~~~li~De~~~~~~ 240 (430)
T 2x5f_A 216 EAIKALANKGTKVIAVVDDAYYGLF 240 (430)
T ss_dssp HHHHHHHHTTCEEEEEEECTTTTCB
T ss_pred HHHHhhhhccCCEEEEEehhccccc
Confidence 99999 999999999996543
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-06 Score=93.79 Aligned_cols=246 Identities=12% Similarity=0.064 Sum_probs=150.2
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~ 529 (891)
+.+++.+...+. +++ +++|+++++..++.+... +.-.|++..-.|.+...++...|.+
T Consensus 72 ~~la~~~g~~~~-~i~--~t~g~~~al~~~~~~l~~-------------------~gd~Vl~~~p~~~~~~~~~~~~g~~ 129 (360)
T 3hdo_A 72 EVAGELYGFDPS-WII--MANGSDEVLNNLIRAFAA-------------------EGEEIGYVHPSYSYYGTLAEVQGAR 129 (360)
T ss_dssp HHHHHHHTCCGG-GEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEESSSCTHHHHHHHHHTCE
T ss_pred HHHHHHhCcCcc-eEE--EcCCHHHHHHHHHHHHhC-------------------CCCEEEEcCCChHHHHHHHHHCCCE
Confidence 344444443233 566 788999999988765311 1124777888888888888888999
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCC--------------
Q psy852 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGI-------------- 579 (891)
Q Consensus 530 v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi-------------- 579 (891)
++.+|.++++.+ ++|++.++ ...++++. ..|++. |.++ +|.+
T Consensus 130 ~~~v~~~~~~~~--~~l~~~~~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~ 201 (360)
T 3hdo_A 130 VRTFGLTGDFRI--AGFPERYE------GKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVR 201 (360)
T ss_dssp EEEECBCTTSSB--TTCCSSBC------SSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHH
T ss_pred EEEeeCCCCCCH--HHHHhhcC------CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhc
Confidence 999999887766 33332211 11222222 235443 3221 1111
Q ss_pred -CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-
Q psy852 580 -EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG- 655 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG- 655 (891)
...+-+..++||+++.| ..+|+++.. ++ +.+.+. .... ++ ...+.+++....+.
T Consensus 202 ~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~-~~~~~~~~~~~--------------~~------~~~~~~~a~~~~l~~ 259 (360)
T 3hdo_A 202 RHENVVVTRTLSKSYSLAGMRIGLAIAR-PE-VIAALDKIRDH--------------YN------LDRLAQAACVAALRD 259 (360)
T ss_dssp HCSSEEEEEESTTTTSCTTSCCEEEECC-HH-HHHHHHHHSCS--------------CC------SCHHHHHHHHHHHHC
T ss_pred cCCCEEEEecchHhhcCCccceeeEeeC-HH-HHHHHHHhCCC--------------CC------CCHHHHHHHHHHhcC
Confidence 11235567999998744 668888773 32 222221 1110 11 12233334333333
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeE
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDE 735 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~ 735 (891)
.+.+.+..++..++++++.+.|++. ++++. ++..+.+.|++.+. ...++.+.|.+.|+.+..+........
T Consensus 260 ~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~-------~~~~l~~~l~~~gi~v~~~~~~~~~~~ 330 (360)
T 3hdo_A 260 QAYLSECCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPPDR-------DGKRVYDGLYARKVLVRHFSDPLLAHG 330 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECTTC-------CHHHHHHHHHHTTEECBCCCSTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCccEEEEECCCC-------CHHHHHHHHHHCCEEEEECCCCCCCCE
Confidence 3346788888899999999999987 78775 45666777877533 356788889999987443332223345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ ++++ +++|+|+++++|+++.
T Consensus 331 iRis~~---~~~e~~~l~~al~~~~ 352 (360)
T 3hdo_A 331 MRISIG---TREEMEQTLAALKEIG 352 (360)
T ss_dssp EEEECC---CHHHHHHHHHHHHHHH
T ss_pred EEEEcC---CHHHHHHHHHHHHHHh
Confidence 5 8876 8999999999999875
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=95.58 Aligned_cols=91 Identities=10% Similarity=-0.010 Sum_probs=73.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-+|++....+...+.+++.++.+ +++.+|+++|++.+++.. ..+.+++.+..+|.||.+-| +++|++
T Consensus 123 Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~ 199 (396)
T 2q7w_A 123 VWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ---AGDVVLFHGCCHNPTGIDPTLEQWQTLAQ 199 (396)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 6667778888888887778899999986 678899999999987531 12467888899999999865 557999
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|+++++|.+|+++.
T Consensus 200 ~~~~~~~~li~De~~~~~~ 218 (396)
T 2q7w_A 200 LSVEKGWLPLFDFAYQGFA 218 (396)
T ss_dssp HHHHHTCEEEEEESCTTSS
T ss_pred HHHHCCCEEEEeccccccc
Confidence 9999999999999996543
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-05 Score=87.01 Aligned_cols=143 Identities=14% Similarity=0.157 Sum_probs=86.2
Q ss_pred cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcc
Q psy852 49 WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQK 128 (891)
Q Consensus 49 ~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~ 128 (891)
|...+...++.+.+.+++.+..|++.+. +.+ .+|+||+...++.+..+ ...
T Consensus 71 y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------------~~i--------------~~t~G~t~al~~~~~~l-~~~- 121 (417)
T 3g7q_A 71 YDGPQGKTALLNALAVLLRETLGWDIEP-------------QNI--------------ALTNGSQSAFFYLFNLF-AGR- 121 (417)
T ss_dssp TTCTTSHHHHHHHHHHHHHHHHCCCCCG-------------GGE--------------EEESCHHHHHHHHHHHH-SBC-
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCCc-------------ccE--------------EEeCCcHHHHHHHHHHH-cCC-
Confidence 3334456688888999998888876431 111 14567764433332222 111
Q ss_pred ccCCccccccccCCeEEEec-CCCChHHHHHHH-H-----cCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEE
Q psy852 129 KIHPFVDEGVLLSKLMAYCS-KEAHSCVEKAAM-M-----AFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVS 200 (891)
Q Consensus 129 ~~~~~~~~g~~~~~~~v~~S-~~~H~Sv~kaa~-~-----~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~ 200 (891)
+. .| .+-.|+++ .-+|.....++. . .+..+..++.+. .+.+|+++|+ +.+. +.+|+
T Consensus 122 gd-----~~---~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~------~~~v~ 185 (417)
T 3g7q_A 122 RA-----DG---STKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGEE------TGMIC 185 (417)
T ss_dssp ------------CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTT------EEEEE
T ss_pred Cc-----cC---CcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cccC------ceEEE
Confidence 00 00 01136665 555555544442 1 123445555442 4578999988 3322 45788
Q ss_pred eecccCccccccC---HHHHHHHHHHcCCceeeeccccC
Q psy852 201 TTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 201 ~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG 236 (891)
++..+|.+|.+-| +++|+++|+++|+++++|.+|+.
T Consensus 186 ~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~ 224 (417)
T 3g7q_A 186 VSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGV 224 (417)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred ECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcc
Confidence 8888999999988 88999999999999999999953
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-06 Score=97.28 Aligned_cols=253 Identities=10% Similarity=0.026 Sum_probs=152.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-----
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD----- 537 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~----- 537 (891)
+|+ +++|+++++..++.+... +.-.|++..-.|.+...++...|.+++.+|.+.
T Consensus 103 ~v~--~~~g~~~a~~~~~~~~~~-------------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 161 (429)
T 1yiz_A 103 EVL--VTVGAYEALYATIQGHVD-------------------EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGG 161 (429)
T ss_dssp SEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSS
T ss_pred CEE--EecChHHHHHHHHHHhcC-------------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccc
Confidence 455 678999999988776521 112477777788888888888899999999865
Q ss_pred -----CCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C------
Q psy852 538 -----KNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G------ 578 (891)
Q Consensus 538 -----~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G------ 578 (891)
++.+|+++|+++|++.+ ..++++. ..|... |.++ +| |
T Consensus 162 ~~~~~~~~~d~~~l~~~l~~~~----~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 237 (429)
T 1yiz_A 162 TISSADWVLDNNELEALFNEKT----KMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRI 237 (429)
T ss_dssp SEEGGGCBCCHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCG
T ss_pred cccccCcccCHHHHHHHhccCc----eEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcCh
Confidence 46899999999986421 1223322 234432 3321 11 1
Q ss_pred --C---CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHH
Q psy852 579 --I---EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIR 652 (891)
Q Consensus 579 --i---~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~ 652 (891)
+ ...|.+..++||+++.| ..+|+++.+++ +.+.+.....+ ..++. + ......+..+|+
T Consensus 238 ~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~--~~~~l~~~~~~-----------~~~~~--~-~~~~~a~~~~l~ 301 (429)
T 1yiz_A 238 CTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEA--LLKNLQMVHQN-----------CVYTC--A-TPIQEAIAVGFE 301 (429)
T ss_dssp GGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHH--HHHHHHHHHHT-----------TTCCC--C-HHHHHHHHHHHH
T ss_pred hhccCCcCceEEEecchhccCCCCcceEEEEeCHH--HHHHHHHHHhh-----------cccCC--C-hHHHHHHHHHHh
Confidence 1 23688899999988744 34899988643 22222110000 00111 1 111112223333
Q ss_pred HH----H--HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcc------hhhhhhHHHHHHHHH-h
Q psy852 653 TY----G--LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENN------LIADQNNRKLLEDIN-A 719 (891)
Q Consensus 653 ~l----G--~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~------~~~d~ln~~L~~~L~-~ 719 (891)
.. + .+.+++..++..+++++|.+.|++. ++++..+.....+++++.+... ..-.....++.+.|. +
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 380 (429)
T 1yiz_A 302 TELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKS 380 (429)
T ss_dssp HHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHh
Confidence 31 3 3446777778888999999999886 6777655445588888864200 000013467888776 6
Q ss_pred CCcEEEeecccc-------CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 720 SGRLHMVPASQE-------QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 720 ~G~~~~s~s~~~-------g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.|+.+..+.... +...+ +++. +++++|+++++.|++++
T Consensus 381 ~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 381 VGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWK 426 (429)
T ss_dssp TSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHS
T ss_pred CCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHHHHHhc
Confidence 898754443321 24566 8876 48999999999998754
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-05 Score=90.41 Aligned_cols=271 Identities=10% Similarity=0.066 Sum_probs=151.4
Q ss_pred HHHHHHHHhhcc-CCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 447 ELAKLFEGKVRR-DPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 447 elAr~l~~~L~~-~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
++.+.+++.+.. .+. +++ +++|+++++..++..||... + +.-+++.+..-|.+...++.+
T Consensus 88 ~l~~~la~~~~~~~~~-~v~--~~~g~~~a~~~~~~~a~~~~-~---------------~~~vi~~~p~y~~~~~~~~~~ 148 (426)
T 1sff_A 88 ELCEIMNQKVPGDFAK-KTL--LVTTGSEAVENAVKIARAAT-K---------------RSGTIAFSGAYHGRTHYTLAL 148 (426)
T ss_dssp HHHHHHHHHSSCSSCE-EEE--EESSHHHHHHHHHHHHHHHH-T---------------CCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHhCCccccc-EEE--EeCchHHHHHHHHHHHHHhh-C---------------CCeEEEECCCcCCCchHhhhh
Confidence 444556666632 212 455 78899999999988776421 1 123566677778777666666
Q ss_pred cCc-------------eEEEecCCC-----CCCcCHHHHHHHHHhhhhcCCccEEEE-e---cCCccc------------
Q psy852 526 AFV-------------RLKILEPDD-----KNSLRGATLRQVMQQDETMGYIPFFVS-T---TLGTTS------------ 571 (891)
Q Consensus 526 ~gv-------------~v~~Vp~d~-----~G~mD~~~Le~aI~~d~~~g~ip~~Vv-a---taGTT~------------ 571 (891)
.+. +++.+|.+. ++.+|+++|+++|++......+-++++ . +.|+..
T Consensus 149 ~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l 228 (426)
T 1sff_A 149 TGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRAL 228 (426)
T ss_dssp SSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHH
T ss_pred cCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHH
Confidence 543 277788753 346899999999974210011222333 1 245322
Q ss_pred hhhh-----hc---------C-------C-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 572 CYRK-----SQ---------G-------I-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 572 c~~~-----ld---------G-------i-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
|.++ +| | . ..+|.+++ +|+++.-+.+|+++.+++ +.+.+.. . ..
T Consensus 229 ~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~--sK~~~~GlriG~~~~~~~--~~~~l~~--~--~~------ 294 (426)
T 1sff_A 229 CDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTF--AKSIAGGFPLAGVTGRAE--VMDAVAP--G--GL------ 294 (426)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEE--CGGGGTSSCCEEEEEEHH--HHTTSCT--T--SB------
T ss_pred HHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEE--cccccCCCceEEEEEcHH--HHhhhcc--C--Cc------
Confidence 3321 11 1 0 12576654 699885344799998764 2222110 0 00
Q ss_pred cccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----CCCcEEeCCCceeEEEEEecCCcch-
Q psy852 630 DYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR----DPRFEISNDVRLGLVCFRLRSENNL- 704 (891)
Q Consensus 630 ~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~----~~~~eil~~~~~~iV~Fr~~~~~~~- 704 (891)
..+.. .-.+....+..+|+.+..+ +..++..++++++.++|++ .+.+... ++..++++|++.+....
T Consensus 295 ---~~~~~-~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 366 (426)
T 1sff_A 295 ---GGTYA-GNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIELFEDGDHN 366 (426)
T ss_dssp ---CCSSS-SCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEE-EEETTEEEEEEBGGGCTT
T ss_pred ---CcCCC-CCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCcccc
Confidence 00110 1112223344445554443 3455666777777777765 3333322 23456888888531000
Q ss_pred -hhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 705 -IADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 705 -~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.......++.+.|.+.|+++..+.. ....+ ++++..++++|++++++.|++++.
T Consensus 367 ~~~~~~~~~l~~~l~~~gi~v~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 422 (426)
T 1sff_A 367 KPDAKLTAEIVARARDKGLILLSCGP--YYNVLRILVPLTIEDAQIRQGLEIISQCFD 422 (426)
T ss_dssp SBCHHHHHHHHHHHHHTTEECEEEST--TSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCcEEecCCC--CCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 0023456788889889987544432 23456 888888999999999999998763
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-06 Score=93.66 Aligned_cols=242 Identities=11% Similarity=-0.003 Sum_probs=148.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+... +.-.|++..-+|.+...++...|.+++.+|.+.+..+|
T Consensus 89 ~v~--~~~g~~~a~~~~~~~l~~-------------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d 147 (376)
T 2dou_A 89 EAL--ALIGSQEGLAHLLLALTE-------------------PEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLAD 147 (376)
T ss_dssp SEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBC
T ss_pred cEE--EcCCcHHHHHHHHHHhcC-------------------CCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCC
Confidence 455 778999999888765421 11247777888888888888889999999985455799
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----h---------cC-----C-----CCccE
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----S---------QG-----I-----EYADS 584 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----l---------dG-----i-----~~aDS 584 (891)
+++|+++|++..+ .++++ +..|+.. |.++ + +| + ...+-
T Consensus 148 ~~~l~~~l~~~~~----~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i 223 (376)
T 2dou_A 148 LKAVPEGVWREAK----VLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVV 223 (376)
T ss_dssp GGGSCHHHHHHEE----EEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEE
T ss_pred HHHHHHhhccCce----EEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEE
Confidence 9999999964321 22222 1235442 3321 1 11 1 12345
Q ss_pred EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHHH
Q psy852 585 FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQK 661 (891)
Q Consensus 585 Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~~ 661 (891)
+..++||+++.| ..+|+++.+++ +.+.+.....+ ..++. ..+.++++...+. .+.+++
T Consensus 224 ~~~s~sK~~~~~G~r~G~~~~~~~--~~~~l~~~~~~-----------~~~~~------~~~~~~a~~~~l~~~~~~~~~ 284 (376)
T 2dou_A 224 ELFSLSKSYNLAGFRLGFALGSEE--ALARLERVKGV-----------IDFNQ------YAGVLRMGVEALKTPKEVVRG 284 (376)
T ss_dssp EEEEHHHHHTCGGGCCEEEEECHH--HHHHHHHHHHH-----------HCCCS------CHHHHHHHHHHHTSCHHHHHH
T ss_pred EEecchhhcCChhheeEEEecCHH--HHHHHHHHHHh-----------cccCC------CHHHHHHHHHHHhCcHHHHHH
Confidence 677899999754 46888876432 22222110000 00000 1222333333332 355677
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc--CCeEE-EE
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--QNDEV-FE 738 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--g~~~l-~s 738 (891)
..++..+++++|.+.|++. +++..+.....++++++.. ....++.+.|.++|+.+..+.... +...+ ++
T Consensus 285 ~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris 356 (376)
T 2dou_A 285 YARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLPEG------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIA 356 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECCTT------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECCCC------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEE
Confidence 7778888999999999886 7765443334677887521 134678889988898755443332 24566 88
Q ss_pred ecCCCCHHHHHHHHHHHHHH
Q psy852 739 LQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ei 758 (891)
++. ++++|+++++.|+++
T Consensus 357 ~~~--~~~~i~~~l~~l~~~ 374 (376)
T 2dou_A 357 LVR--PLEELLEAAKRIREA 374 (376)
T ss_dssp CCS--CHHHHHHHHHHHHHT
T ss_pred ecC--CHHHHHHHHHHHHHH
Confidence 764 789999999988764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.6e-07 Score=98.29 Aligned_cols=184 Identities=11% Similarity=-0.067 Sum_probs=115.5
Q ss_pred CCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 13 THWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
.+..-..|+++..++...+.+...+....-+.....|.......++-+.+.+++.+-.|++-+ |+++
T Consensus 31 i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-------------~~~i 97 (401)
T 7aat_A 31 MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFK-------------SGRY 97 (401)
T ss_dssp EECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-------------TTCE
T ss_pred eeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccc-------------cCce
Confidence 444445566666666666666665544433222223332233445555666666554443211 1111
Q ss_pred cccccccCCCCCCCCc--ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEe
Q psy852 93 DMNIEDYMTPANQPQS--LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 170 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~--~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~ 170 (891)
.+ |+||+...++.+..+..... +.-.|+++.-+|.+....+...|.+++.++
T Consensus 98 --------------~~v~t~G~~~al~~~~~~l~~~~~------------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~ 151 (401)
T 7aat_A 98 --------------VTVQGISGTGSLRVGANFLQRFFK------------FSRDVYLPKPSWGNHTPIFRDAGLQLQAYR 151 (401)
T ss_dssp --------------EEEEEEHHHHHHHHHHHHHHHHCT------------TCCEEEEEESCCTTHHHHHHHTTCEEEEEE
T ss_pred --------------EEEecCcchHHHHHHHHHHHHhcc------------CCCEEEEcCCCchhHHHHHHHcCCeeEeee
Confidence 12 57887544433333321111 112377777888888888877788999999
Q ss_pred cC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 171 PD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 171 ~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
.+ +++.+|++.|++.+++. ...+.+|+.+..+|.||.+ +++++|+++|+++|+++++|-||+++.
T Consensus 152 ~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 221 (401)
T 7aat_A 152 YYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFA 221 (401)
T ss_dssp CEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTT
T ss_pred eeccccCccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEcccccccc
Confidence 75 47899999999988762 1235688888999999955 568899999999999999999996554
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.4e-06 Score=98.10 Aligned_cols=234 Identities=14% Similarity=0.143 Sum_probs=140.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~ 544 (891)
.++|++++..++.+.-. +.-.|+++...|.+....+ ...|++++.+|.+ |++
T Consensus 135 ~~sG~~Ai~~al~~l~~-------------------~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~ 190 (445)
T 1qgn_A 135 MASGMCASTVMLLALVP-------------------AGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-----DVG 190 (445)
T ss_dssp ESCHHHHHHHHHHHHSC-------------------SSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-----CHH
T ss_pred eCCHHHHHHHHHHHHhC-------------------CCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHH
Confidence 34556998888765310 1124777888888877653 3468899999875 899
Q ss_pred HHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCccc
Q psy852 545 TLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTAF 597 (891)
Q Consensus 545 ~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P~ 597 (891)
+|+++|++++- ..+++. +..|+.. |+++ +|.+ ..+|.+..++||+++.+.
T Consensus 191 ~l~~ai~~~tv---~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~g 267 (445)
T 1qgn_A 191 ALELALNQKKV---NLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHN 267 (445)
T ss_dssp HHHHHHHHSCE---EEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSS
T ss_pred HHHHHhccCCC---CEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccc
Confidence 99999986420 122222 2234433 4331 2221 248999999999998553
Q ss_pred --ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy852 598 --DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEG 675 (891)
Q Consensus 598 --g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~ 675 (891)
..|+++.+++ .+ +.+.. +.. .++ -....+..|..++ +.+.+..++++..++++++.+
T Consensus 268 d~~~G~l~~~~~-l~-~~l~~---~~~----------~~g----~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~ 326 (445)
T 1qgn_A 268 DVLAGCISGPLK-LV-SEIRN---LHH----------ILG----GALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAE 326 (445)
T ss_dssp SCCCEEEEECHH-HH-HHHHH---HHH----------HHC----CCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECHH-HH-HHHHH---HHH----------HhC----CCCCHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHH
Confidence 2888887653 22 21110 000 000 0012334465543 556677788888899999999
Q ss_pred HhccCCCc-EEeCC-----C-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc---------
Q psy852 676 KVRRDPRF-EISND-----V-----------RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS--------- 729 (891)
Q Consensus 676 ~L~~~~~~-eil~~-----~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~--------- 729 (891)
.|++.|++ ++..+ | ..++++|.+.+. ......+++.|...++....+..
T Consensus 327 ~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-----~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~ 401 (445)
T 1qgn_A 327 ILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-----LLTTAKFVDALKIPYIAPSFGGCESIVDQPAI 401 (445)
T ss_dssp HHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-----HHHHHHHHHHCSSSEECSCCCSSSCEEECHHH
T ss_pred HHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-----HHHHHHHHHhCCCceEeccCCCCceeeecccc
Confidence 99999888 44433 1 357999999752 22345666666533332111110
Q ss_pred ------------ccC--CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 730 ------------QEQ--NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 730 ------------~~g--~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+ ...+ +|++ .||+|.++++|++..
T Consensus 402 ~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al 442 (445)
T 1qgn_A 402 MSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQAL 442 (445)
T ss_dssp HHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHH
Confidence 011 2466 9887 468999999998876
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=96.54 Aligned_cols=247 Identities=12% Similarity=0.023 Sum_probs=151.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-C-C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-N-S 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G-~ 540 (891)
+++ +++|+++++..++.+... +.-.|++..-+|.+...++...|.+++.+|.+++ | .
T Consensus 101 ~v~--~t~g~~~a~~~~~~~~~~-------------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (412)
T 2x5d_A 101 EAI--VTIGSKEGLAHLMLATLD-------------------HGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFF 159 (412)
T ss_dssp SEE--EESCHHHHHHHHHHHHCC-------------------TTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHH
T ss_pred CEE--EcCChHHHHHHHHHHhCC-------------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCC
Confidence 455 678999999988776411 1225788888899998888888899999998765 3 4
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh--------------hcC--------C---CC
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK--------------SQG--------I---EY 581 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~--------------ldG--------i---~~ 581 (891)
+|+++|++++++.+ ..++++. ..|+.. |.++ .+| + ..
T Consensus 160 ~d~~~l~~~i~~~~----~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 235 (412)
T 2x5d_A 160 NELERAIRESIPKP----RMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKD 235 (412)
T ss_dssp HHHHHHHHTEESCC----SEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGG
T ss_pred CCHHHHHHhcccCc----eEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccC
Confidence 89999999886421 2233322 245442 3321 111 1 23
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--Hhh
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSG 658 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G 658 (891)
.|-+..++||+++.| ..+|+++.+++ +.+.+.....+ ..++ ...+.++++...+. .+.
T Consensus 236 ~~i~~~s~sK~~~~~G~r~G~~~~~~~--~~~~l~~~~~~-----------~~~~------~~~~~~~a~~~~l~~~~~~ 296 (412)
T 2x5d_A 236 IAVEFFTLSKSYNMAGWRIGFMVGNPE--LVSALARIKSY-----------HDYG------TFTPLQVAAIAALEGDQQC 296 (412)
T ss_dssp TEEEEEECC-CCSCTTSCCEEEEECHH--HHHHHHHHHHH-----------HCCC------CCHHHHHHHHHHHHSCSHH
T ss_pred cEEEEecCccccCCcccceEEEEcCHH--HHHHHHHHHhh-----------hccC------CCHHHHHHHHHHHhCCHHH
Confidence 567789999999744 45899988533 22222110000 0011 11233344444442 345
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeeccc--cCCe
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQ--EQND 734 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~--~g~~ 734 (891)
+++..++..++++++.+.|++. ++++.. +..+ .++++++... . ......+.+.|.+ .|+.+..+... .+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~g~~~~~~~~~~~-~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~ 371 (412)
T 2x5d_A 297 VRDIARQYQQRRDVLVKGLREA-GWMVEN-PKASMYVWAKIPEPY-A--HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDD 371 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCCCC-CSBSSEEEEECCTTT-G--GGCHHHHHHHHHHHHCEECEEGGGGCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCEecC-CCeeeEEEEEcCCcc-C--CCCHHHHHHHHHHHCCEEEeCchhhCCCCCC
Confidence 7777788888999999999886 666653 3434 6777774210 0 0135678888865 69876544433 2345
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+ ++++. ++++|+++++.|++++.
T Consensus 372 ~iRis~~~--~~~~l~~~l~~l~~~l~ 396 (412)
T 2x5d_A 372 HVRFALIE--NRDRLRQAVRGIKAMFR 396 (412)
T ss_dssp EEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 66 88875 78999999999988763
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-05 Score=89.95 Aligned_cols=270 Identities=10% Similarity=-0.016 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++++.+++.+...+. +|+ +++|++|+|..++.+++.....+. ..++-+|+.....|.+..-++.
T Consensus 88 ~~~l~~~la~~~~~~~~-~v~--~~~ggtea~~~ai~~~~~~~~~~g-----------~~~~~vi~~~~~yh~~~~~~~~ 153 (429)
T 1s0a_A 88 AIELCRKLVAMTPQPLE-CVF--LADSGSVAVEVAMKMALQYWQAKG-----------EARQRFLTFRNGYHGDTFGAMS 153 (429)
T ss_dssp HHHHHHHHHHHSCTTCC-EEE--EESSHHHHHHHHHHHHHHHHHHHT-----------CCCCEEEEETTCCCCSSHHHHT
T ss_pred HHHHHHHHHHhCCCCCC-EEE--EeCCHHHHHHHHHHHHHHHhcccC-----------CCCCeEEEECCCCCCCchhhhh
Confidence 35666777777753233 566 789999999999988775322110 0012345555567765544443
Q ss_pred HcC-------------ceEEEecCC------CCCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc---------
Q psy852 525 MAF-------------VRLKILEPD------DKNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS--------- 571 (891)
Q Consensus 525 l~g-------------v~v~~Vp~d------~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~--------- 571 (891)
+.+ .+++.+|++ ..+.+|+++|+++|++.. ..+.++++. ..|+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~~~~vi~~p~~~n~tG~~~~~~~~l~~i 231 (429)
T 1s0a_A 154 VCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR--HEIAAVIIEPIVQGAGGMRMYHPEWLKRI 231 (429)
T ss_dssp TSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT--TTEEEEEECSSEECTTTCEEBCTHHHHHH
T ss_pred hcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCC--CCEEEEEEeecccCCCCcccCCHHHHHHH
Confidence 321 135556653 235799999999997521 122233332 245422
Q ss_pred ---hhhh-----hc---------C----C----CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccC-CCccccC
Q psy852 572 ---CYRK-----SQ---------G----I----EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVD-PLYLQHG 624 (891)
Q Consensus 572 ---c~~~-----ld---------G----i----~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~-~~Yl~~~ 624 (891)
|.++ +| | + ...|.++++ |+++++ +++|+++.+++ +.+.+... ...+..
T Consensus 232 ~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~s--K~l~~G~~~iG~~~~~~~--~~~~l~~~~~~~~~~- 306 (429)
T 1s0a_A 232 RKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSATLTTRE--VAETISNGEAGCFMH- 306 (429)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECHH--HHHHHHTSTTSSCSC-
T ss_pred HHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEEec--ccccCCCccceEEEeCHH--HHHHhhcCCCccccc-
Confidence 3331 11 1 0 125777766 988877 88999998753 22322211 000000
Q ss_pred CCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC---CCcEEeCCCceeEEEEEecCC
Q psy852 625 HEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD---PRFEISNDVRLGLVCFRLRSE 701 (891)
Q Consensus 625 ~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~---~~~eil~~~~~~iV~Fr~~~~ 701 (891)
..+... -.+.....-.+++.+..+ +..++..+++++|.++|+++ +.+..+ ++..+++.|.+.+.
T Consensus 307 --------~~t~~~-n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~~~~~~~ 373 (429)
T 1s0a_A 307 --------GPTFMG-NPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGVVETTHP 373 (429)
T ss_dssp --------CCTTTT-CHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEEEEESSC
T ss_pred --------CCCCCC-CHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEEEEECCc
Confidence 001100 011112223334433333 34566677888999988774 455432 22335777877531
Q ss_pred cchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 702 NNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 702 ~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.....+.+.|.++|+++ .+. + ..+ ++++..+|++|++++++.|++++
T Consensus 374 ------~~~~~l~~~l~~~Gi~v-~~~---~-~~iRis~~~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 374 ------VNMAALQKFFVEQGVWI-RPF---G-KLIYLMPPYIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp ------BCHHHHHHHHHHTTEEC-CCB---T-TEEEECCCTTCCHHHHHHHHHHHHHHT
T ss_pred ------ccHHHHHHHHHHCCCEE-ecc---C-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 13457888888889773 221 2 456 99888899999999999998775
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.8e-06 Score=94.50 Aligned_cols=83 Identities=17% Similarity=0.096 Sum_probs=64.8
Q ss_pred EEEecCCCChHHHHHHHHcCCe------------EEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc-
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVR------------LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS- 210 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~------------v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga- 210 (891)
+|+.+..-|.+...++...+.+ ++.++.+ |+++|++.+++. +.+|+++..+|.+|.
T Consensus 131 vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~~~~nptG~~ 199 (397)
T 2ord_A 131 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSED------VCAVFLEPIQGESGIV 199 (397)
T ss_dssp EEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTT------EEEEEECSEECTTTCE
T ss_pred EEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhhcC------eEEEEEecccCCCCcc
Confidence 4556667787777666554433 7777763 899999988643 457788889999999
Q ss_pred ---ccCHHHHHHHHHHcCCceeeeccccCC
Q psy852 211 ---FDNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 211 ---vDpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
.+++++|+++|+++|+++++|.+++|+
T Consensus 200 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 229 (397)
T 2ord_A 200 PATKEFLEEARKLCDEYDALLVFDEVQCGM 229 (397)
T ss_dssp ECCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 489999999999999999999999663
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=4.3e-06 Score=92.85 Aligned_cols=252 Identities=12% Similarity=0.070 Sum_probs=144.6
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++.+.+++.+...+. +++ +++|+++++..++.+++... + ++-+|+.+...|.+...++.+
T Consensus 90 ~~l~~~la~~~~~~~~-~v~--~~~gg~~a~~~al~~~~~~~-~---------------~~~vi~~~~~y~~~~~~~~~~ 150 (395)
T 1vef_A 90 GEFYRTLTAILPPELN-RVF--PVNSGTEANEAALKFARAHT-G---------------RKKFVAAMRGFSGRTMGSLSV 150 (395)
T ss_dssp HHHHHHHHHTSCTTEE-EEE--EESSHHHHHHHHHHHHHHHH-S---------------CCEEEEETTCCCCSSHHHHHT
T ss_pred HHHHHHHHHhcCCCcC-EEE--EcCcHHHHHHHHHHHHHHHh-C---------------CCeEEEEcCCcCCCchhhhhh
Confidence 3455566666532222 455 67899999999988775311 0 123455555566666656555
Q ss_pred cCce------------EEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc------------hhhh---
Q psy852 526 AFVR------------LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS------------CYRK--- 575 (891)
Q Consensus 526 ~gv~------------v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~------------c~~~--- 575 (891)
.+.+ +..+|. .|+++|+++|++.+ ..++++ +..|+.. |.++
T Consensus 151 ~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~----~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~ 221 (395)
T 1vef_A 151 TWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEET----AAVILEPVQGEGGVRPATPEFLRAAREITQEKGAL 221 (395)
T ss_dssp CCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTE----EEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCE
T ss_pred cCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccCE----EEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCE
Confidence 4432 333432 48899988886421 112221 2245432 3321
Q ss_pred --hcC----C-------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 576 --SQG----I-------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 576 --ldG----i-------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
+|+ + ..+|.+++ ||+++++.++|+++++++ +.+.+... .+ ...++.
T Consensus 222 li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~--sK~~~~g~~~G~~~~~~~--~~~~l~~~-~~----------~~~~~~ 286 (395)
T 1vef_A 222 LILDEIQTGMGRTGKRFAFEHFGIVPDILTL--AKALGGGVPLGVAVMREE--VARSMPKG-GH----------GTTFGG 286 (395)
T ss_dssp EEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCEEEEEEHH--HHHTSCTT-SS----------CCSSTT
T ss_pred EEEEecccCCccCCchhHhhhcCCCCCEEEE--cccccCCCceEEEEehHH--HHhhhccC-Cc----------CCCcCC
Confidence 111 1 12577755 999998899999999865 32222110 00 001110
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEe--CCCceeEEEEEecCCcchhhhhhHHHHH
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS--NDVRLGLVCFRLRSENNLIADQNNRKLL 714 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil--~~~~~~iV~Fr~~~~~~~~~d~ln~~L~ 714 (891)
-.+....+..+++.+.. .+..++..++++++.+.|++.+. .++ .++..++++|++.+. ...+.
T Consensus 287 ---~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~~~~~--------~~~l~ 351 (395)
T 1vef_A 287 ---NPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS-PKIREVRGMGLMVGLELKEK--------AAPYI 351 (395)
T ss_dssp ---CHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC-TTEEEEEEETTEEEEEESSC--------SHHHH
T ss_pred ---CHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc-CceEEEEEEEEEEEEEEcCh--------HHHHH
Confidence 01222233444554433 34566777889999999987643 111 122346888887531 35678
Q ss_pred HHHH-hCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 715 EDIN-ASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 715 ~~L~-~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.|. +.|+.+..+ +...+ ++++..++++|++++++.|+++.
T Consensus 352 ~~l~~~~gi~v~~~----~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 352 ARLEKEHRVLALQA----GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHHCEECEES----STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEecC----CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 8888 889774332 34566 88888899999999999998764
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.4e-06 Score=93.35 Aligned_cols=246 Identities=8% Similarity=-0.042 Sum_probs=149.4
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH-cCceEEEecCCC-CCCc
Q psy852 464 ISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM-AFVRLKILEPDD-KNSL 541 (891)
Q Consensus 464 Vv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l-~gv~v~~Vp~d~-~G~m 541 (891)
++ +++|+++++..++.+... +.-.|++..-.|......+.. .|.+++.+|.++ ++.+
T Consensus 116 i~--~t~g~~~al~~~~~~l~~-------------------~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~ 174 (430)
T 2x5f_A 116 PI--VTNALTHGLSLVGDLFVN-------------------QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHY 174 (430)
T ss_dssp CE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCB
T ss_pred EE--EcCCchHHHHHHHHHHhC-------------------CCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCc
Confidence 55 678999999888776421 112477778888888888888 899999999875 4789
Q ss_pred CHHHHHHHHHhhhhcCCccEEEEe----cCCccc-----------hhh-----h-----hc---------CC--------
Q psy852 542 RGATLRQVMQQDETMGYIPFFVST----TLGTTS-----------CYR-----K-----SQ---------GI-------- 579 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vva----taGTT~-----------c~~-----~-----ld---------Gi-------- 579 (891)
|+++|+++|++.. ....++++. ..|++. |.+ + +| |-
T Consensus 175 d~~~l~~~l~~~~--~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 252 (430)
T 2x5f_A 175 TTDSLVEALQSYN--KDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTA 252 (430)
T ss_dssp CSHHHHHHHHHCC--SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHH
T ss_pred CHHHHHHHHHhcC--CCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHH
Confidence 9999999998621 112222322 245443 444 3 11 10
Q ss_pred ----CCc---cEEEEcCcccCCcc-cccEEEEE--eCCccchhhhcc-CCCccccCCCCCccccCCcccccccccchHHH
Q psy852 580 ----EYA---DSFNVNVNKWLLTA-FDSSCLWV--ADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLW 648 (891)
Q Consensus 580 ----~~a---DSIs~d~HK~L~~P-~g~G~llv--R~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW 648 (891)
... +-+..+.||+++.| ..+|++++ +++..+ +.+.. .....+.. .++ ...+.++
T Consensus 253 ~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~-~~l~~~~~~~~~~~--------~~~------~~~~~~~ 317 (430)
T 2x5f_A 253 LTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTK-EVLEAKVKGLIRSN--------ISS------GPLPTQS 317 (430)
T ss_dssp HHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHH-HHHHHHHHHHHHTT--------TSS------CCHHHHH
T ss_pred HhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHH-HHHHHHHhhhhhcc--------cCC------CChHHHH
Confidence 111 34467899999756 34799988 233322 22211 00000000 001 1223444
Q ss_pred HHHHHHH-----HhhHHHHHHHHHHHHHHHHHHhc----cCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 649 FVIRTYG-----LSGLQKYIRRHCELAKLFEGKVR----RDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 649 ~~L~~lG-----~~G~~~~i~~~~~lA~~L~~~L~----~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
++...+. .+.+.+..++..++++++.+.|+ +. ++++..+.....+++++++. ...++.+.|.+
T Consensus 318 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~~~-------~~~~~~~~l~~ 389 (430)
T 2x5f_A 318 AVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVHDV-------DPEALRKHLID 389 (430)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEESSS-------CHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCCCC-------CHHHHHHHHHH
Confidence 4444443 22233366677788899999998 43 67765433333577787522 34678888887
Q ss_pred -CCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 720 -SGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 720 -~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.|+.+..+ +...+ ++++. +++++|+++++.|++++.
T Consensus 390 ~~gi~v~~g----~~~~iRis~~~-~~~e~i~~~~~~l~~~l~ 427 (430)
T 2x5f_A 390 KYSIGVIAL----NATDIRIAFSC-VEKDDIPHVFDSIAKAID 427 (430)
T ss_dssp HHCEECEEC----SSSEEEEEGGG-SCGGGHHHHHHHHHHHHH
T ss_pred hCCEEEecC----CCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 89875443 34556 98885 599999999999998763
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.44 E-value=9.4e-06 Score=88.52 Aligned_cols=251 Identities=10% Similarity=0.027 Sum_probs=149.5
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCc
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV 528 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv 528 (891)
.+.+++.+...+. +++ +++|+++++..++.+.. . -.|+++.-.|.+...++...|.
T Consensus 56 r~~la~~~~~~~~-~i~--~t~g~~~al~~~~~~l~-----g----------------d~Vi~~~p~~~~~~~~~~~~g~ 111 (350)
T 3fkd_A 56 RQMLAKRNSVDNN-AIL--VTNGPTAAFYQIAQAFR-----G----------------SRSLIAIPSFAEYEDACRMYEH 111 (350)
T ss_dssp HHHHHHHTTCCGG-GEE--EESHHHHHHHHHHHHTT-----T----------------CEEEEEESCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHH-HEE--EcCCHHHHHHHHHHHHC-----C----------------CEEEEeCCCcHHHHHHHHHcCC
Confidence 3444445543333 566 78899999988876643 1 1377788889988888888888
Q ss_pred eEEEecC-CCCCCcCH---------------------HHHHHHHHhhhhcCCccEEEEecCCccc-----hhhhhcCCCC
Q psy852 529 RLKILEP-DDKNSLRG---------------------ATLRQVMQQDETMGYIPFFVSTTLGTTS-----CYRKSQGIEY 581 (891)
Q Consensus 529 ~v~~Vp~-d~~G~mD~---------------------~~Le~aI~~d~~~g~ip~~VvataGTT~-----c~~~ldGi~~ 581 (891)
+++.+|. ++.+.+++ +.|++.++...+ .++++....+... ....++ ...
T Consensus 112 ~~~~v~~~~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~---~~li~Dea~~~~~~~~~~~~~~~~-~~~ 187 (350)
T 3fkd_A 112 EVCFYPSNEDIGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPD---TTFVLDQSYVSFTTEEVIRPADIK-GRK 187 (350)
T ss_dssp EEEEEETTSCGGGSCCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTT---SEEEEECTTTTSCSSCCCCGGGGT-TCS
T ss_pred eEEEEecCCccccCccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCC---CEEEEECchhhhccCcchhhHHhh-cCC
Confidence 8888888 65344433 333333332110 1222222111000 000111 112
Q ss_pred ccEEEEcCcccCCc-ccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh-H
Q psy852 582 ADSFNVNVNKWLLT-AFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG-L 659 (891)
Q Consensus 582 aDSIs~d~HK~L~~-P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G-~ 659 (891)
.+-+..+++|+++. ...+|+++. +++.. +.+..... .+ ....+.++++...+.... +
T Consensus 188 ~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~-~~~~~~~~-------------~~------~~~~~~~~~~~~~l~~~~~~ 246 (350)
T 3fkd_A 188 NLVMVYSFSHAYGIPGLRIGYIVA-NKDFM-KRVAAFST-------------PW------AVNALAIEAAKFILIHPAQF 246 (350)
T ss_dssp SEEEEEESHHHHSCGGGCCEEEEC-CHHHH-HHHHTTCC-------------TT------CSCHHHHHHHHHHHHCTTTT
T ss_pred CEEEEecCchhccCcchheEeEEe-CHHHH-HHHHHhCC-------------CC------CCCHHHHHHHHHHHhCHHHH
Confidence 34667789999984 477898887 33322 22211000 00 112344555555554333 4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeeccc--cCCeEE
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQ--EQNDEV 736 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~--~g~~~l 736 (891)
.+.+++..++++++.+.|++.+++++. ++..+.+.++++.. ...++.+.|.+ .|+.+..+... .+...+
T Consensus 247 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~i 318 (350)
T 3fkd_A 247 TLPIRKWQRNTVDFITALNRLDGVEVH-PSGTTFFLLRLKKG-------TAAELKKYMLEEYNMLIRDASNFRGLDESYV 318 (350)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTEEEC-CCSSSEEEEEESSS-------CHHHHHHHHHHTTCEECEECTTSTTCCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEC-CCCCcEEEEECCCC-------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEE
Confidence 455556668999999999988899875 45566777888532 45678889988 89876555433 224566
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++ +.+++|+++++|+++.
T Consensus 319 Ris~~---~~~~~~~l~~al~~~~ 339 (350)
T 3fkd_A 319 RITTQ---RPAQNQLFIKALETFL 339 (350)
T ss_dssp EEECC---CHHHHHHHHHHHHHHH
T ss_pred EEEcC---CHHHHHHHHHHHHHHH
Confidence 8875 8899999999998776
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2e-05 Score=88.23 Aligned_cols=93 Identities=9% Similarity=-0.011 Sum_probs=65.4
Q ss_pred EEEecCCCChHHHHHHHHcCC-------------eEEEEecCC-----CCcccHHHHHHHHHhhhhcCCcceEEEeeccc
Q psy852 144 MAYCSKEAHSCVEKAAMMAFV-------------RLKILEPDD-----KNSLRGATLRQVMQQDETMGYIPFFVSTTLGT 205 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~-------------~v~~V~~d~-----~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gt 205 (891)
+++.+..-|.+...++.+.+. .++.++.+. .+.+|+++|++.+++.. .+..+.+|+++...
T Consensus 131 vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~ 209 (426)
T 1sff_A 131 TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQ 209 (426)
T ss_dssp EEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBC
T ss_pred EEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEeccc
Confidence 455666777777666655432 277788763 34689999999997421 11124466665433
Q ss_pred CccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 206 TSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 206 t~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+.+|.+.| +++|+++|+++|++|++|.+|+|+
T Consensus 210 ~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 245 (426)
T 1sff_A 210 GEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA 245 (426)
T ss_dssp TTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhcc
Confidence 33997777 999999999999999999999763
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-05 Score=90.53 Aligned_cols=164 Identities=7% Similarity=-0.086 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQ 107 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~ 107 (891)
..|.+...+...+-.....++..++ .+...++.++|+++++... +.. .
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~v-----------------------------~ 108 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPAGATILSAS--NAPAVTLAERLLASFPGEGTHKI-----------------------------W 108 (439)
T ss_dssp SCHHHHHHHHHHHHSCSCSCSSSSE--EHHHHHHHHHHHHTTTCTTTEEE-----------------------------E
T ss_pred CCHHHHHHHHHHHHhccCccccccC--CHHHHHHHHHHHHhCCCCCCCEE-----------------------------E
Confidence 4566666665554332222222222 3556667788899885432 110 1
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCe--------------EEEEecCC
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR--------------LKILEPDD 173 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~--------------v~~V~~d~ 173 (891)
+++||+... ...+.++|.... ++-+|++...-|.+...++.+.+.. +..++.+.
T Consensus 109 ~~~ggsea~-~~al~~~~~~~~-----------~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (439)
T 3dxv_A 109 FGHSGSDAN-EAAYRAIVKATG-----------RSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP 176 (439)
T ss_dssp EESSHHHHH-HHHHHHHHHHHS-----------CCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC
T ss_pred EeCCHHHHH-HHHHHHHHHHhC-----------CCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc
Confidence 457887654 444444543211 1234556666677766665443321 23455443
Q ss_pred CCcc-----cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 174 KNSL-----RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 174 ~g~i-----d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
.+.- |+++|++.+++. ....+.+|++.-.++.+|.+.| +++|+++|++||++|++|-+|+|+
T Consensus 177 ~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~ 247 (439)
T 3dxv_A 177 YRNDPTGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL 247 (439)
T ss_dssp BTTBTTSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred ccccccHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 3333 899999999521 1123567777778888999999 999999999999999999999764
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.2e-06 Score=92.27 Aligned_cols=78 Identities=12% Similarity=0.004 Sum_probs=64.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEec-CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEP-DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~-d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
|+++.-+|.+...++...+.+++.+++ ++.+.+++ +. +.+|+++..+|.+|.+-|+++|.++++.
T Consensus 92 Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~--------~~------~~~v~i~~p~nptG~~~~~~~l~~l~~~ 157 (350)
T 3fkd_A 92 SLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF--------SN------MDFCWLCNPNNPDGRLLQRTEILRLLND 157 (350)
T ss_dssp EEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC--------TT------CSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc--------CC------CCEEEEeCCCCCcCCCCCHHHHHHHHHh
Confidence 777788999999888878889999999 76566665 11 3467778889999999999999999998
Q ss_pred cC-CceeeeccccC
Q psy852 224 FD-VWLHVDGAYAG 236 (891)
Q Consensus 224 ~~-~~lHvDaA~GG 236 (891)
++ .++++|.||++
T Consensus 158 ~~~~~li~Dea~~~ 171 (350)
T 3fkd_A 158 HPDTTFVLDQSYVS 171 (350)
T ss_dssp CTTSEEEEECTTTT
T ss_pred CCCCEEEEECchhh
Confidence 86 68888888854
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.2e-06 Score=90.58 Aligned_cols=249 Identities=11% Similarity=0.020 Sum_probs=149.5
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++.+...+. +|+ +++|+++++..++.+. +. -.|++..-+|.+...++...|.++
T Consensus 67 ~la~~~~~~~~-~v~--~~~g~~~al~~~~~~~-----~g----------------d~vl~~~p~y~~~~~~~~~~g~~~ 122 (364)
T 1lc5_A 67 ALARHHQVPAS-WIL--AGNGETESIFTVASGL-----KP----------------RRAMIVTPGFAEYGRALAQSGCEI 122 (364)
T ss_dssp HHHHHHTSCGG-GEE--EESSHHHHHHHHHHHH-----CC----------------SEEEEEESCCTHHHHHHHHTTCEE
T ss_pred HHHHHHCcCHH-HEE--ECCCHHHHHHHHHHHc-----CC----------------CeEEEeCCCcHHHHHHHHHcCCeE
Confidence 34444433222 455 7889999999887765 11 136667778888888888889999
Q ss_pred EEecCCCCCCcCH-HHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C---
Q psy852 531 KILEPDDKNSLRG-ATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G--- 578 (891)
Q Consensus 531 ~~Vp~d~~G~mD~-~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G--- 578 (891)
+.+|.+++..+++ +++.+.+.+ ....++++. ..|+.. |.++ +| +
T Consensus 123 ~~v~~~~~~~~~~l~~~~~~~~~----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 198 (364)
T 1lc5_A 123 RRWSLREADGWQLTDAILEALTP----DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGF 198 (364)
T ss_dssp EEEECCGGGTTCCCTTHHHHCCT----TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCS
T ss_pred EEEeCCcccccchhHHHHHhccC----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccch
Confidence 9999875333443 434343322 111223322 245443 3321 11 1
Q ss_pred C-----CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHH
Q psy852 579 I-----EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIR 652 (891)
Q Consensus 579 i-----~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~ 652 (891)
+ ...|-+..+.||+++.| ..+|++++.+++.+......... ++ ...+.+++...
T Consensus 199 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--------------~~------~~~~~~~~~~~ 258 (364)
T 1lc5_A 199 IPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMP--------------WS------VNALAALAGEV 258 (364)
T ss_dssp GGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCT--------------TC------SCHHHHHHHHH
T ss_pred hhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCC--------------CC------CCHHHHHHHHH
Confidence 1 12466788999999855 45788883444332221111100 11 12334444444
Q ss_pred HHHH-hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-
Q psy852 653 TYGL-SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ- 730 (891)
Q Consensus 653 ~lG~-~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~- 730 (891)
.+.. +.+++..++..++++++.+.|++.+++++. ++..+.++|++... ..++.+.|.++|+.+..+...
T Consensus 259 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~~--------~~~l~~~l~~~gi~v~~g~~~~ 329 (364)
T 1lc5_A 259 ALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCERE--------DIDLQRRLLTQRILIRSCANYP 329 (364)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESCT--------TCCHHHHHHTTTEECEECTTST
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC-CCCCeEEEEECCCc--------HHHHHHHHHHCCcEEeeCcccC
Confidence 4432 456677777888899999999988888876 45566777877421 235778888889875544433
Q ss_pred -cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 -EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 -~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+...+ ++++ +.+|+++++++|+++.
T Consensus 330 ~~~~~~iRis~~---~~~~~~~l~~~l~~~~ 357 (364)
T 1lc5_A 330 GLDSRYYRVAIR---SAAQNERLLAALRNVL 357 (364)
T ss_dssp TCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 224566 8864 6899999999998775
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-05 Score=90.95 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=63.1
Q ss_pred EEecCCCChHHHHHHHHcCCe----------EEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC-
Q psy852 145 AYCSKEAHSCVEKAAMMAFVR----------LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN- 213 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~----------v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp- 213 (891)
|++..-+|.+...++...+.+ ++.+++++++.++.+. ++. ..+.+|+++..+|.+|.+-+
T Consensus 158 Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~v~l~~p~NPtG~~~~~ 228 (449)
T 3qgu_A 158 VAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDL-SKA--------KRTDIIFFCSPNNPTGAAATR 228 (449)
T ss_dssp EEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCG-GGC--------CCCSEEEEESSCTTTCCCCCH
T ss_pred EEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCCh-hHc--------CCCCEEEEeCCCCCCCCcCCH
Confidence 777788999999888766666 9999998765443321 110 12346666678999999865
Q ss_pred --HHHHHHHHHHcCCceeeeccccCCc
Q psy852 214 --LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 214 --l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++|+++|+++|+++++|.+|+++.
T Consensus 229 ~~l~~l~~l~~~~~~~li~Dea~~~~~ 255 (449)
T 3qgu_A 229 AQLTELVNFARKNGSILVYDAAYALYI 255 (449)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTGGGC
T ss_pred HHHHHHHHHHHHCCcEEEEEcchHhhh
Confidence 7888889999999999999997643
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=97.03 Aligned_cols=244 Identities=9% Similarity=-0.043 Sum_probs=148.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-CCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G~m 541 (891)
+|+ +++|+++++..++.+... +.-.|++..-.|.+...++...|.+++.+|.+++ ..+
T Consensus 111 ~v~--~t~G~~~al~~~~~~l~~-------------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 169 (404)
T 2o1b_A 111 EVC--ILYGTKNGLVAVPTCVIN-------------------PGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLP 169 (404)
T ss_dssp SEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCC
T ss_pred cEE--EcCCcHHHHHHHHHHhcC-------------------CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcC
Confidence 455 788999999888776421 1124777777888888888888999999999764 468
Q ss_pred CHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C-------CC---Ccc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G-------IE---YAD 583 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G-------i~---~aD 583 (891)
|+++|++++++.++ .++++. ..|++. |.++ +| | +. ..|
T Consensus 170 d~~~l~~~l~~~~~----~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 245 (404)
T 2o1b_A 170 DWSKVDSQIIDKTK----LIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVA 245 (404)
T ss_dssp CGGGSCHHHHHHEE----EEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHE
T ss_pred CHHHHHHhhccCce----EEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCE
Confidence 99999999964321 222221 245442 3321 11 1 10 134
Q ss_pred EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHH
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQ 660 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~ 660 (891)
-+..++||+++.| ..+|+++.+++ .+ +.+.....+ ..++ ...+.++++...+. .+.++
T Consensus 246 i~~~s~sK~~g~~G~r~G~~~~~~~-~~-~~l~~~~~~-----------~~~~------~~~~~~~a~~~~l~~~~~~~~ 306 (404)
T 2o1b_A 246 IEIYSLSKGYNMSGFRVGFAVGNKD-MI-QALKKYQTH-----------TNAG------MFGALQDAAIYALNHYDDFLE 306 (404)
T ss_dssp EEEEESTTTTTCGGGCCEEEEECHH-HH-HHHHHHHHH-----------HCCC------CCHHHHHHHHHHHHHCHHHHH
T ss_pred EEEEecchhccCchhheEeEecCHH-HH-HHHHHHHhh-----------ccCC------CCHHHHHHHHHHHhcCHHHHH
Confidence 6788999999755 46898877432 22 222110000 0001 11233444444443 35567
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc--CCeEE-
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE--QNDEV- 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~--g~~~l- 736 (891)
+..++..++++++.+.|++. ++++..+.....+++++... ....++.+.|. +.|+.+..+.... +...+
T Consensus 307 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iR 379 (404)
T 2o1b_A 307 EQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLETPPG------YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVR 379 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEECCTT------CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCeecCCCcceEEEEeCCCC------CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEE
Confidence 77777888999999999887 67776433333477777521 13457788876 5798765444332 24566
Q ss_pred EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++. ++++|+++++.|++++
T Consensus 380 is~~~--~~e~l~~~l~~l~~~l 400 (404)
T 2o1b_A 380 ISLAL--DDQKLDEAAIRLTELA 400 (404)
T ss_dssp EECCS--CTTHHHHHHHHHHGGG
T ss_pred EEEcC--CHHHHHHHHHHHHHHH
Confidence 88875 6789999998887654
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-06 Score=94.49 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=60.3
Q ss_pred EEecCC---CChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceE-EEeecccCccc-cccCHHHHHH
Q psy852 145 AYCSKE---AHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFF-VSTTLGTTSCC-SFDNLAEIGP 219 (891)
Q Consensus 145 v~~S~~---~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~-V~~t~Gtt~~G-avDpl~~I~~ 219 (891)
|+++.. .|+++...+...|.+++.| +|+++|++. .+ .+.+ |+++..+|.+| ...|+++|++
T Consensus 101 Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~~------~~~~~v~~~~p~nptG~~~~~l~~i~~ 166 (374)
T 2aeu_A 101 VIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-ID------KDTLVIITGSTMDLKVIELENFKKVIN 166 (374)
T ss_dssp EEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-CC------TTEEEEEECBCTTSCBCCHHHHHHHHH
T ss_pred EEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-CC------CccEEEEEccCCCCCCCCcccHHHHHH
Confidence 555555 5778766666667788777 388888876 32 2456 77778899999 9999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++++|.++|
T Consensus 167 l~~~~~~~li~De~~~ 182 (374)
T 2aeu_A 167 TAKNKEAIVFVDDASG 182 (374)
T ss_dssp HHHHHTCCEEEECTTH
T ss_pred HHHHcCCEEEEECCcc
Confidence 9999999999999984
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-05 Score=90.21 Aligned_cols=257 Identities=10% Similarity=0.012 Sum_probs=149.4
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +++|+++++..++.+... .+.-.|+++.-.|.+...++...|.+++.+|++++ +.
T Consensus 159 ~i~--~t~G~~~al~~~~~~l~~------------------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 218 (500)
T 3tcm_A 159 DIF--LTDGASPGVHLMMQLLIR------------------NEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWG 218 (500)
T ss_dssp GEE--EESSSHHHHHHHHHHHCC------------------STTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSB
T ss_pred cEE--EcCCHHHHHHHHHHHHcC------------------CCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCC
Confidence 566 788999999887766310 02235888899999999999999999999998765 48
Q ss_pred cCHHHHHHHHHhhhhcCCcc-EEEEec----CCccc-----------hhhh-----hc----------CC----------
Q psy852 541 LRGATLRQVMQQDETMGYIP-FFVSTT----LGTTS-----------CYRK-----SQ----------GI---------- 579 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip-~~Vvat----aGTT~-----------c~~~-----ld----------Gi---------- 579 (891)
+|+++|+++|++....+..+ ++++.+ .|++. |.++ +| +.
T Consensus 219 ~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~ 298 (500)
T 3tcm_A 219 LETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVR 298 (500)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHH
Confidence 99999999998865444333 222222 34432 3321 11 10
Q ss_pred ------CCccEEEE-cCcccC-Ccc-cccEEEEEe--CCccchhhhccCCCccccCCCCCccccCCcccccccccchHHH
Q psy852 580 ------EYADSFNV-NVNKWL-LTA-FDSSCLWVA--DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLW 648 (891)
Q Consensus 580 ------~~aDSIs~-d~HK~L-~~P-~g~G~llvR--~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW 648 (891)
...+.|++ +.+|.+ +.| ..+|++++. +++.+.........+. + ...+.++
T Consensus 299 ~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~----------------~---~~~~~q~ 359 (500)
T 3tcm_A 299 SLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNL----------------C---SNITGQI 359 (500)
T ss_dssp HTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHTTC----------------C---CCHHHHH
T ss_pred HhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhccc----------------C---CCHHHHH
Confidence 11123443 899988 333 447888874 3332222111100000 0 0112222
Q ss_pred HHHHHH------------HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEE-EecCCcc-----hhhhhh-
Q psy852 649 FVIRTY------------GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF-RLRSENN-----LIADQN- 709 (891)
Q Consensus 649 ~~L~~l------------G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~F-r~~~~~~-----~~~d~l- 709 (891)
++...+ -...+.++.++..+++++|.+.|++++++++.. ++.++..| ++..... ...+..
T Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~~lp~~~~~~~~~~g~~~ 438 (500)
T 3tcm_A 360 LASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNE-AEGAMYVFPQICLPQKAIEAAKAANKAP 438 (500)
T ss_dssp HHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBTTEECCEECCCHHHHHHHHHHTSCH
T ss_pred HHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEec-CCeEEEEeeeecCchhhHHHHHhcCCCc
Confidence 222222 113345566677888999999999998998864 44444333 3321100 000001
Q ss_pred HHH-HHHHHHhCCcEEEeeccc---cCCeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 710 NRK-LLEDINASGRLHMVPASQ---EQNDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 710 n~~-L~~~L~~~G~~~~s~s~~---~g~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
... +...|.+.|++++.++.. .+...+ +++. +++++|+++++.|.++...
T Consensus 439 ~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 439 DAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence 122 235566779886655443 334456 8887 7889999999999988753
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-05 Score=88.01 Aligned_cols=249 Identities=8% Similarity=0.044 Sum_probs=148.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+... +.-.|++..-.|......+...|.+++.+|.+++| +|
T Consensus 110 ~i~--~t~G~~~al~~~~~~l~~-------------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d 167 (425)
T 2r2n_A 110 DLC--VTSGSQQGLCKVFEMIIN-------------------PGDNVLLDEPAYSGTLQSLHPLGCNIINVASDESG-IV 167 (425)
T ss_dssp EEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEESSCCHHHHHHHGGGTCEEEEECEETTE-EC
T ss_pred cEE--EeCcHHHHHHHHHHHhCC-------------------CCCEEEEeCCCcHHHHHHHHHcCCEEEEeCcCCCC-CC
Confidence 566 788999999888766411 11247777788888888888889999999998765 99
Q ss_pred HHHHHHHHHhhh--------hcCCccEEEE----ecCCccc-----------hhhh--------------hcC-------
Q psy852 543 GATLRQVMQQDE--------TMGYIPFFVS----TTLGTTS-----------CYRK--------------SQG------- 578 (891)
Q Consensus 543 ~~~Le~aI~~d~--------~~g~ip~~Vv----ataGTT~-----------c~~~--------------ldG------- 578 (891)
+++|++++++.. ......++++ +..|++. |.++ ..|
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~ 247 (425)
T 2r2n_A 168 PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFL 247 (425)
T ss_dssp HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTG
T ss_pred HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCcc
Confidence 999999997321 0111122232 2346553 3321 112
Q ss_pred -CC--CccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHH---H
Q psy852 579 -IE--YADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV---I 651 (891)
Q Consensus 579 -i~--~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~---L 651 (891)
+. ..+-+..+.+|+++ | .-+|+++..++ +.+.+.....+ ..++ ...+.++++ |
T Consensus 248 ~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~--l~~~l~~~~~~-----------~~~~------~~~~~q~a~~~~l 307 (425)
T 2r2n_A 248 SMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKP--LIERVILHIQV-----------STLH------PSTFNQLMISQLL 307 (425)
T ss_dssp GGCTTSCEEEEEESTTTTC-STTCCEEEEEEHH--HHHHHHHHHHT-----------TTCS------SCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEccchhhcc-CccceEEEecCHH--HHHHHHHHHHH-----------hcCC------CCHHHHHHHHHHH
Confidence 11 12345668999997 5 34799988754 22222110000 0011 112233333 3
Q ss_pred HHHHHhh----HHHHHHHHHHHHHHHHHHhcc-CCCcE-EeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE
Q psy852 652 RTYGLSG----LQKYIRRHCELAKLFEGKVRR-DPRFE-ISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHM 725 (891)
Q Consensus 652 ~~lG~~G----~~~~i~~~~~lA~~L~~~L~~-~~~~e-il~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~ 725 (891)
+.++..+ ++++.++..++++++.+.|++ .+++. +..+.....+++++++.. + ..+.+.+.|.+.|+.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~----~-~~~~~~~~l~~~gv~v~ 382 (425)
T 2r2n_A 308 HEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN----D-VKELIEEKAVKMGVLML 382 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS----C-CHHHHHTHHHHTTEECE
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC----C-HHHHHHHHHHHCCcEEe
Confidence 3332223 344445566788888888887 57764 444444567778885421 1 12235777888898865
Q ss_pred eecccc-----CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 726 VPASQE-----QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 726 s~s~~~-----g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+.... +...+ ++++. .++++|+++++.|++++
T Consensus 383 pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 383 PGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp EGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHH
T ss_pred chhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHH
Confidence 544332 23566 88774 59999999999998876
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=98.40 E-value=7.4e-06 Score=91.00 Aligned_cols=84 Identities=8% Similarity=-0.016 Sum_probs=59.7
Q ss_pred CeEEEecCCCChHHHHHHHHcC------------CeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccc
Q psy852 142 KLMAYCSKEAHSCVEKAAMMAF------------VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCC 209 (891)
Q Consensus 142 ~~~v~~S~~~H~Sv~kaa~~~~------------~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~G 209 (891)
+-+++.+..-|.+...+...++ .++..++.+ |+++|++.+++. +.+|+++ .++.+|
T Consensus 129 ~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~-p~np~g 196 (406)
T 4adb_A 129 SGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALIDDS------TCAVIVE-PIQGEG 196 (406)
T ss_dssp CEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCSTT------EEEEEEC-SEETTT
T ss_pred cEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhcCC------eEEEEEe-CCcCCC
Confidence 3456667777777666665543 244555443 799999888643 4577777 455555
Q ss_pred -----cccCHHHHHHHHHHcCCceeeeccccCC
Q psy852 210 -----SFDNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 210 -----avDpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
..+++++|+++|+++|++|++|.+++|+
T Consensus 197 ~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 229 (406)
T 4adb_A 197 GVVPASNAFLQGLRELCNRHNALLIFDEVQTGV 229 (406)
T ss_dssp TSEECCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 4468999999999999999999999764
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=98.39 E-value=7.6e-06 Score=90.92 Aligned_cols=262 Identities=12% Similarity=0.067 Sum_probs=148.0
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++++.+++.+.. + +++ +++||++++..++.+++.....+.. ..++.+|+.+...|.+...+..+
T Consensus 84 ~~l~~~la~~~~~-~--~v~--~~~gg~~a~~~al~~~~~~~~~~~~----------~g~~~vi~~~~~y~~~~~~~~~~ 148 (406)
T 4adb_A 84 LRLAKKLIDATFA-D--RVF--FCNSGAEANEAALKLARKFAHDRYG----------SHKSGIVAFKNAFHGRTLFTVSA 148 (406)
T ss_dssp HHHHHHHHHHSSC-S--EEE--EESSHHHHHHHHHHHHHHHHHHHTC----------TTCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHhhCCC-C--eEE--EeCcHHHHHHHHHHHHHHHHHhcCC----------CCCcEEEEECCCcCCCcHHHhhc
Confidence 3455566666542 2 566 7889999999999888765433211 11245677777777776666555
Q ss_pred cC------------ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCcc--c----------hhhh---
Q psy852 526 AF------------VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTT--S----------CYRK--- 575 (891)
Q Consensus 526 ~g------------v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT--~----------c~~~--- 575 (891)
++ .++..+|. .|+++|+++|+++++ .+++ +.+.|.. . |.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~----~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~ 219 (406)
T 4adb_A 149 GGQPAYSQDFAPLPADIRHAAY-----NDINSASALIDDSTC----AVIVEPIQGEGGVVPASNAFLQGLRELCNRHNAL 219 (406)
T ss_dssp SSCGGGTGGGCSCCSSEEEECT-----TCHHHHHTTCSTTEE----EEEECSEETTTTSEECCHHHHHHHHHHHHHTTCE
T ss_pred cCCccccccCCCCCCCceEeCC-----CcHHHHHHHhcCCeE----EEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 43 23444444 268888887764321 1111 2222321 1 3331
Q ss_pred --hcC----C-------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 576 --SQG----I-------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 576 --ldG----i-------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
+|. + ...|.+++ ||+++....+|+++.+++ +.+.+.. . .. ..+.
T Consensus 220 li~De~~~~~~~~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~~~~~~--~~~~~~~---~-~~---------~~~~ 282 (406)
T 4adb_A 220 LIFDEVQTGVGRTGELYAYMHYGVTPDLLTT--AKALGGGFPVGALLATEE--CARVMTV---G-TH---------GTTY 282 (406)
T ss_dssp EEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECHH--HHHTCCT---T-SS---------CCSS
T ss_pred EEEeccccCCCccchhHHHHhcCCCCCEEEe--chhhcCCCCeEEEEEcHH--HHhhhcc---C-Cc---------CCCC
Confidence 111 1 12577876 999985566899877654 2111110 0 00 0011
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC-CcEEeCC--CceeEEEEEecCCcchhhhhhHHHH
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP-RFEISND--VRLGLVCFRLRSENNLIADQNNRKL 713 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~-~~eil~~--~~~~iV~Fr~~~~~~~~~d~ln~~L 713 (891)
....+.+++.+..+......+..++..++++++.+.|++.. .+.++.+ ...+++.|.+.... .....++
T Consensus 283 ----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~ 354 (406)
T 4adb_A 283 ----GGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADY----AGQAKQI 354 (406)
T ss_dssp ----TTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTT----TTCHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCc----HHHHHHH
Confidence 11123333333333221125667777888888888887642 1111111 12357778875421 1246788
Q ss_pred HHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 714 LEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 714 ~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+.|.++|+.+..+ +...+ ++++..+|++||+++++.|++++.
T Consensus 355 ~~~l~~~gi~v~~~----~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~ 398 (406)
T 4adb_A 355 SQEAAKAGVMVLIA----GGNVVRFAPALNVSEEEVTTGLDRFAAACE 398 (406)
T ss_dssp HHHHHHTTEECEES----STTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEeec----CCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 89999999874332 34566 888888999999999999998874
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.8e-06 Score=94.28 Aligned_cols=88 Identities=8% Similarity=-0.086 Sum_probs=71.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEE-eecccCccccccCHH---HHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS-TTLGTTSCCSFDNLA---EIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~-~t~Gtt~~GavDpl~---~I~~ 219 (891)
.|++..-+|.+....+...|.+++.|+++++| +|+++|++++++. ..+.+|. ....+|.||.+-|.+ +|++
T Consensus 126 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~ 200 (423)
T 3ez1_A 126 KMIVTVPGYDRHFLLLQTLGFELLTVDMQSDG-PDVDAVERLAGTD----PSVKGILFVPTYSNPGGETISLEKARRLAG 200 (423)
T ss_dssp EEEEEESCCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHHSC----TTEEEEEECSSSCTTTCCCCCHHHHHHHHT
T ss_pred EEEEcCCCcHHHHHHHHHcCCEEEeccCCCCC-CCHHHHHHHHhhC----CCceEEEECCCCCCCCCcCCCHHHHHHHHH
Confidence 47777888999888887778899999998876 9999999999621 1134554 447899999998888 8888
Q ss_pred HH-HHcCCceeeeccccC
Q psy852 220 VA-KEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~-~~~~~~lHvDaA~GG 236 (891)
+| +++|+++++|.+|+.
T Consensus 201 ~a~~~~~~~li~De~y~~ 218 (423)
T 3ez1_A 201 LQAAAPDFTIFADDAYRV 218 (423)
T ss_dssp CCCSSTTCEEEEECTTSS
T ss_pred HHHhccCCEEEEECCcch
Confidence 88 899999999999953
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-05 Score=91.17 Aligned_cols=233 Identities=12% Similarity=0.098 Sum_probs=141.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH----HHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K----aa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
+++||++++..++.+.- + +.-.|+++...|.+... .+...|++++.+|.+ |+
T Consensus 82 ~~~~g~~ai~~~~~~l~----~---------------~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~ 137 (404)
T 1e5e_A 82 ATSSGMGAIAATVLTIL----K---------------AGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-----IP 137 (404)
T ss_dssp EESSHHHHHHHHHHHHC----C---------------TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----ST
T ss_pred EeCChHHHHHHHHHHHh----C---------------CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CH
Confidence 45677888887776531 0 12247888889988877 566788999999886 88
Q ss_pred HHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh-h-----hcC-----C------CCccEEEEcCcccCCc
Q psy852 544 ATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR-K-----SQG-----I------EYADSFNVNVNKWLLT 595 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~-~-----ldG-----i------~~aDSIs~d~HK~L~~ 595 (891)
++|+++|++.+ ..++++. ..|... |.+ + +|. . -.+|.+..++||++++
T Consensus 138 ~~l~~~i~~~t----~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~ 213 (404)
T 1e5e_A 138 GEVKKHMKPNT----KIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYING 213 (404)
T ss_dssp THHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTC
T ss_pred HHHHHhcCCCC----cEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCC
Confidence 89999887532 1233332 234443 555 3 222 1 1479999999999999
Q ss_pred ccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy852 596 AFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673 (891)
Q Consensus 596 P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L 673 (891)
|.+ +|+++.+++ .+.+.+.....+. ++. ....+.+|+.++.+ +.+...+++..++++++
T Consensus 214 ~g~ri~G~~~~~~~-~~~~~l~~~~~~~------------~g~----~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l 274 (404)
T 1e5e_A 214 HTDVVAGLICGKAD-LLQQIRMVGIKDI------------TGS----VISPHDAWLITRGL--STLNIRMKAESENAMKV 274 (404)
T ss_dssp SSCCCCEEEEECHH-HHHHHHHTCCCCC------------CCC----CCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEECHH-HHHHHHHHHHHhC------------CCC----CCCHHHHHHHHHhH--hHHHHHHHHHHHHHHHH
Confidence 987 688888764 2221222111110 010 11234566665544 34566677778888888
Q ss_pred HHHhccCCCcE-EeCC------------C----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc------
Q psy852 674 EGKVRRDPRFE-ISND------------V----RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ------ 730 (891)
Q Consensus 674 ~~~L~~~~~~e-il~~------------~----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~------ 730 (891)
.+.|++.+.++ ++.+ + ..++++|++.+. .+.+.+.|.+.|++.. +.+.
T Consensus 275 ~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~l~~~~i~~~-~~s~G~~~sl 345 (404)
T 1e5e_A 275 AEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG--------FEGAKKLLDNLKLITL-AVSLGGCESL 345 (404)
T ss_dssp HHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH--------HHHHHHHHHTCSSSEE-SSCCCSSSCE
T ss_pred HHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC--------HHHHHHHHHhCCCcee-ccCCCCccee
Confidence 88887765443 1111 1 267899988531 2334455666776322 2110
Q ss_pred -------------------cC--CeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 -------------------EQ--NDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 -------------------~g--~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+ ...+ ++++. ||++.+++.|+++..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~ 393 (404)
T 1e5e_A 346 IQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLD 393 (404)
T ss_dssp EECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHH
Confidence 12 3566 98876 889999999988763
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.7e-05 Score=87.71 Aligned_cols=256 Identities=9% Similarity=-0.007 Sum_probs=148.2
Q ss_pred HHHHHHHHHhhccC-CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 446 CELAKLFEGKVRRD-PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 446 lelAr~l~~~L~~~-~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
.++++.+++.+... ++ +|+ +++|++|+|..++.+++... ++-+|+....-|.+...++.
T Consensus 89 ~~l~~~la~~~~~~~~~-~v~--~~~gg~ea~~~ai~~~~~~~-----------------~~~vi~~~p~yh~~~~~~~~ 148 (419)
T 2eo5_A 89 LELAKKLVTYSPGNFQK-KVF--FSNSGTEAIEASIKVVKNTG-----------------RKYIIAFLGGFHGRTFGSIS 148 (419)
T ss_dssp HHHHHHHHHHSSCSSCE-EEE--EESSHHHHHHHHHHHHHTTS-----------------CCEEEEETTCCCCSSHHHHH
T ss_pred HHHHHHHHHhCCCCcCC-EEE--EeCchHHHHHHHHHHHHHhh-----------------CCcEEEECCCcCCCCHhhHh
Confidence 45666677766532 33 566 78999999999998876411 12345555667765555554
Q ss_pred HcC-------------ceEEEecCCCCCC----------------cCHHHHH-HHHHhhhhcCCccEEEEe----cCCcc
Q psy852 525 MAF-------------VRLKILEPDDKNS----------------LRGATLR-QVMQQDETMGYIPFFVST----TLGTT 570 (891)
Q Consensus 525 l~g-------------v~v~~Vp~d~~G~----------------mD~~~Le-~aI~~d~~~g~ip~~Vva----taGTT 570 (891)
+.+ .+++.+|.+.+.+ +|+++|+ ++|++......+.++++. +.|+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~ 228 (419)
T 2eo5_A 149 LTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYV 228 (419)
T ss_dssp HCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSB
T ss_pred hcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCc
Confidence 321 2577888765433 4788999 888742100112233332 24542
Q ss_pred c------------hhhh-----hc---------C----C----CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhc
Q psy852 571 S------------CYRK-----SQ---------G----I----EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALV 615 (891)
Q Consensus 571 ~------------c~~~-----ld---------G----i----~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~ 615 (891)
. |.++ +| | + ...|.++++ |.++.+ .++|+++.+++. . .+.
T Consensus 229 ~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~riG~~~~~~~~-~--~~~ 303 (419)
T 2eo5_A 229 IPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLA--KALGGGIMPIGATIFRKDL-D--FKP 303 (419)
T ss_dssp CCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEEEGGG-C--CC-
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEec--ccccCCccceEEEEEchHh-h--cCC
Confidence 2 3321 11 1 0 124777655 888877 889999987652 1 111
Q ss_pred cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEE
Q psy852 616 VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVC 695 (891)
Q Consensus 616 ~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~ 695 (891)
.. . ..+.. ...+.+.+++..+.. +.+..++..+++++|.+.|++. +..+ ++..+++.
T Consensus 304 ---~~-~----------~~t~~----~n~~~~~aa~aal~~--~~~~~~~~~~~~~~l~~~L~~~--~~~~-~~~g~~~~ 360 (419)
T 2eo5_A 304 ---GM-H----------SNTFG----GNALACAIGSKVIDI--VKDLLPHVNEIGKIFAEELQGL--ADDV-RGIGLAWG 360 (419)
T ss_dssp -------------------CCC----CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTS--SSEE-EEETTEEE
T ss_pred ---cc-c----------CCCCC----CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh--hhhe-EeeeEEEE
Confidence 00 0 00110 112333333333321 2236677788899999999875 2222 23446777
Q ss_pred EEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 696 FRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 696 Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
|.+.+. ..... +.+.|.+.|+++.... ...+ ++++..+|++|++++++.|++++
T Consensus 361 i~~~~~-----~~~~~-~~~~l~~~Gv~v~~~~----~~~lRis~~~~~t~e~i~~~l~~l~~~l 415 (419)
T 2eo5_A 361 LEYNEK-----KVRDR-IIGESFKRGLLLLPAG----RSAIRVIPPLVISEEEAKQGLDILKKVI 415 (419)
T ss_dssp EECSCH-----HHHHH-HHHHHHHTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEecC-----ccHHH-HHHHHHHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 777431 12355 8888888998754332 3456 98888899999999999999876
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-06 Score=94.13 Aligned_cols=249 Identities=10% Similarity=0.051 Sum_probs=152.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC----C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD----K 538 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~----~ 538 (891)
+|+ +++|+++++..++.+... +.-.|++..-.|.+...++...|.+++.+|.+. +
T Consensus 93 ~i~--~~~g~~~a~~~~~~~~~~-------------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 151 (422)
T 3fvs_A 93 NVL--VTVGGYGALFTAFQALVD-------------------EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQN 151 (422)
T ss_dssp HEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCS
T ss_pred cEE--EECChHHHHHHHHHHHcC-------------------CCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccc
Confidence 455 688999999888766411 122477777788888888888899999999876 3
Q ss_pred --------CCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C----
Q psy852 539 --------NSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G---- 578 (891)
Q Consensus 539 --------G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G---- 578 (891)
+.+|+++|++++++++ ..++++. ..|++. |.++ +| |
T Consensus 152 G~~~~~~~~~~d~~~l~~~~~~~~----~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~ 227 (422)
T 3fvs_A 152 GELGSSSNWQLDPMELAGKFTSRT----KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHI 227 (422)
T ss_dssp SSCCBGGGSBCCHHHHHTTCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC
T ss_pred cccccccCCCCCHHHHHhhcCCCc----eEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCC
Confidence 4799999999987532 1223322 245443 3321 11 1
Q ss_pred ----CC---CccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHH
Q psy852 579 ----IE---YADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV 650 (891)
Q Consensus 579 ----i~---~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~ 650 (891)
+. ..+-+..+.||.++.| ..+|+++.+++ +.+.+.....+ ..++ ...+.+++.
T Consensus 228 ~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~--~~~~~~~~~~~-----------~~~~------~~~~~~~a~ 288 (422)
T 3fvs_A 228 SIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDH--IMKHLRTVHQN-----------SVFH------CPTQSQAAV 288 (422)
T ss_dssp CGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHH--HHHHHHHHHHT-----------TTCC------CCHHHHHHH
T ss_pred ChhhcccccCcEEEEecchhccCCccceEEEEEeCHH--HHHHHHHHHhh-----------ccCC------CCcHHHHHH
Confidence 00 1235566889999755 67888877543 22211100000 0011 112333344
Q ss_pred HHHHH---------HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhh--------hhHHHH
Q psy852 651 IRTYG---------LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIAD--------QNNRKL 713 (891)
Q Consensus 651 L~~lG---------~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d--------~ln~~L 713 (891)
...+. ...+++..++..++++++.+.|++. ++++..+.....+++.+..... ..+ ....++
T Consensus 289 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 366 (422)
T 3fvs_A 289 AESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKR-KMPDLPGAVDEPYDRRF 366 (422)
T ss_dssp HHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHHH-HCCCCCCCTTCCHHHHH
T ss_pred HHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEechhhcc-cccccccccccccHHHH
Confidence 44432 3456777788889999999999987 7887766556667777643100 000 004466
Q ss_pred HHHH-HhCCcEEEeeccc-------cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 714 LEDI-NASGRLHMVPASQ-------EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 714 ~~~L-~~~G~~~~s~s~~-------~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...| .+.|+++..+..+ .+...+ +++.. ++++|+++++.|+++.
T Consensus 367 ~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 367 VKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DEATLQAMDEKLRKWK 419 (422)
T ss_dssp HHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 6665 4579876655543 245666 88765 9999999999998765
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.37 E-value=4e-06 Score=92.09 Aligned_cols=251 Identities=12% Similarity=0.076 Sum_probs=140.0
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+.. +. +++ +++|+++++..++.++|.... +.. .| .+-+++.+..-|.+...+..++
T Consensus 74 ~l~~~la~~~g~-~~-~v~--~~~g~t~a~~~~~~~~~~~~~-~~~-------~g---~~~vl~~~~~y~~~~~~~~~~~ 138 (375)
T 2eh6_A 74 ELAHKLVKHFWT-EG-KVF--FANSGTESVEAAIKLARKYWR-DKG-------KN---KWKFISFENSFHGRTYGSLSAT 138 (375)
T ss_dssp HHHHHHHHTSSS-CE-EEE--EESSHHHHHHHHHHHHHHHHH-HTT-------CC---CCEEEEEBTCCCCSSHHHHHHC
T ss_pred HHHHHHHhhcCC-CC-eEE--EeCchHHHHHHHHHHHHHHhc-cCC-------CC---CCEEEEECCCcCCCchhhhhhc
Confidence 444555555533 32 455 788999999999887654221 000 01 1223444444466555554443
Q ss_pred Cce------------EEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc------------hhhh----
Q psy852 527 FVR------------LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS------------CYRK---- 575 (891)
Q Consensus 527 gv~------------v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~------------c~~~---- 575 (891)
+.. +..+|. +|+++|+++|+++++ .+++ .+..|+.. |.++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~----~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~l 209 (375)
T 2eh6_A 139 GQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEETA----GIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLL 209 (375)
T ss_dssp BCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCTTEE----EEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEE
T ss_pred CCccccCCCCCCCCCceeCCC-----chHHHHHHHhcCCeE----EEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEE
Confidence 211 344443 478888887764211 1222 22335542 3221
Q ss_pred -hc---------C----C----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc
Q psy852 576 -SQ---------G----I----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP 637 (891)
Q Consensus 576 -ld---------G----i----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~ 637 (891)
+| + + ..+|.++++ |+++++.++|+++++++ +.+.+... .+ . ..++
T Consensus 210 i~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~--~~~~~~~~-~~---~-------~~~~-- 272 (375)
T 2eh6_A 210 IIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREE--VAQSFTPG-SH---G-------STFG-- 272 (375)
T ss_dssp EEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHH--HHTTCCTT-SC---C-------CSST--
T ss_pred EEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHH--HHhhhcCC-CC---C-------CCCC--
Confidence 11 1 0 127888888 88888899999999764 22222110 00 0 0111
Q ss_pred ccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHH
Q psy852 638 LSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDI 717 (891)
Q Consensus 638 ~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L 717 (891)
...+.++..+..+... .+..++..++++++.+.|++.+...+ ++..++++|++.. ...++.+.|
T Consensus 273 ----~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~g~~~~~~~~~--------~~~~~~~~l 336 (375)
T 2eh6_A 273 ----GNPLACRAGTVVVDEV--EKLLPHVREVGNYFKEKLKELGKGKV--KGRGLMLGLELER--------ECKDYVLKA 336 (375)
T ss_dssp ----TCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSSEE--EEETTEEEEECSS--------CCHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCc--eEEEEEEEEEEcC--------cHHHHHHHH
Confidence 1123333333222221 16677788899999999988654222 2344677887742 135677888
Q ss_pred HhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 718 NASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 718 ~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.++|+....+ +...+ ++++..++++|++++++.|+++
T Consensus 337 ~~~gi~~~~~----~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 337 LEKGLLINCT----AGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHTTEECEEE----TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHCCCEEecC----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8889774322 34456 8888889999999999999864
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-05 Score=89.81 Aligned_cols=283 Identities=10% Similarity=0.030 Sum_probs=149.4
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++++.+.+.+..... +++ ++.||+|+|..++.++|.....+. ...++-+|.....-|-...-+..
T Consensus 101 ~~~lae~l~~~~~~~~~-~v~--~~~sGseA~~~aik~a~~~~~~~g----------~~~~~~ii~~~~~yHg~t~~~~~ 167 (472)
T 3hmu_A 101 AIALAQKLAELAPGDLN-HVF--FAGGGSEANDTNIRMVRTYWQNKG----------QPEKTVIISRKNAYHGSTVASSA 167 (472)
T ss_dssp HHHHHHHHHHHSCTTEE-EEE--EESSHHHHHHHHHHHHHHHHHHTT----------CTTCCEEEEETTCCCCSSHHHHH
T ss_pred HHHHHHHHHHhCCCCCC-EEE--EeCCHHHHHHHHHHHHHHHHHhcC----------CCCCCEEEEEcCcCCCccHHhhh
Confidence 34566666666532112 455 778999999999999998654221 11123345445555544333333
Q ss_pred HcCc-----------eEEEecCCC-----CCCcC--------HHHHHHHHHhhhhcCCccEEEE-e---cCCccc-----
Q psy852 525 MAFV-----------RLKILEPDD-----KNSLR--------GATLRQVMQQDETMGYIPFFVS-T---TLGTTS----- 571 (891)
Q Consensus 525 l~gv-----------~v~~Vp~d~-----~G~mD--------~~~Le~aI~~d~~~g~ip~~Vv-a---taGTT~----- 571 (891)
+.+. .+..+|... ++ +| +++|+++|++... ..+.++++ . +.|...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~-~~~aavi~epv~~~gG~~~~~~~~ 245 (472)
T 3hmu_A 168 LGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGE-NRVAAFIAEPVQGAGGVIVAPDSY 245 (472)
T ss_dssp HSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG-GGEEEEEECSSBSTTTCBCCCTTH
T ss_pred ccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCC-CCEEEEEEcCccCCCCcccCCHHH
Confidence 3221 344555322 22 44 7888888864211 11222232 1 223222
Q ss_pred -------hhhh-----hc----CC-------------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCcc
Q psy852 572 -------CYRK-----SQ----GI-------------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYL 621 (891)
Q Consensus 572 -------c~~~-----ld----Gi-------------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl 621 (891)
|.++ +| |+ -..|-++++ |.++.. .+.|+++.+++ +.+.+. ...+
T Consensus 246 l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~gg~~plG~v~~~~~--i~~~~~--~~~~ 319 (472)
T 3hmu_A 246 WPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSSGYAPIGGSIVCDE--VAHVIG--KDEF 319 (472)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHH--HHHHHT--TSCB
T ss_pred HHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeec--hhhhcCCcceEEEEECHH--HHHhcc--cCCc
Confidence 3331 11 11 125788776 988876 57788888654 323331 1111
Q ss_pred ccCCCCCccccCCcccccccccchHHHH---HHHHHHHhhHHHHHHHHH-HHHHHHHHHhccC---CCcEEeCCCceeEE
Q psy852 622 QHGHEGAIDYRHWGIPLSRRFRSLKLWF---VIRTYGLSGLQKYIRRHC-ELAKLFEGKVRRD---PRFEISNDVRLGLV 694 (891)
Q Consensus 622 ~~~~e~~~~~~~~ti~~SRr~~aL~lW~---~L~~lG~~G~~~~i~~~~-~lA~~L~~~L~~~---~~~eil~~~~~~iV 694 (891)
.+. .+.. ...+.+.+ +|+.+..+. .+++.. ++.+++.+.|+++ +.+..+. ..-+++
T Consensus 320 ~~~---------~t~~----~np~a~aAa~aaL~~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr-~~G~~~ 382 (472)
T 3hmu_A 320 NHG---------YTYS----GHPVAAAVALENLRILEEEN---ILDHVRNVAAPYLKEKWEALTDHPLVGEAK-IVGMMA 382 (472)
T ss_dssp CCC---------CTTT----TCHHHHHHHHHHHHHHHHTT---HHHHHHHTHHHHHHHHHHGGGGSTTEEEEE-EETTEE
T ss_pred ccc---------CCCC----CCHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecCceE
Confidence 110 1111 12233333 344333333 344455 5666666666543 4333321 233566
Q ss_pred EEEecCCcch--hh----hhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q psy852 695 CFRLRSENNL--IA----DQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLVCFRLR 767 (891)
Q Consensus 695 ~Fr~~~~~~~--~~----d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~~~l~ 767 (891)
.|.+.+.... .. ......+.+.|.++|+++... + ..+ |++....|++|||++++.|++.+..+.+.+.
T Consensus 383 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~~~~~ 457 (472)
T 3hmu_A 383 SIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV----G-DRMIISPPLVITPAEIDEMFVRIRKSLDEAQAEIE 457 (472)
T ss_dssp EEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE----T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec----C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777532110 00 223667889999999874432 2 556 8888889999999999999998865554444
Q ss_pred ccC
Q psy852 768 SEN 770 (891)
Q Consensus 768 ~~~ 770 (891)
.+.
T Consensus 458 ~~~ 460 (472)
T 3hmu_A 458 KQG 460 (472)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.37 E-value=6.4e-06 Score=92.73 Aligned_cols=223 Identities=7% Similarity=-0.086 Sum_probs=130.6
Q ss_pred eEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE----ecCCccc-----------
Q psy852 507 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS----TTLGTTS----------- 571 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~----------- 571 (891)
-.|++..-+|.+...++...|.+++.+|++++| +|+++|+++|+.. ....++++ +..|++.
T Consensus 134 d~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~---~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~ 209 (427)
T 3ppl_A 134 VKWICPVPGYDRHFSITERFGFEMISVPMNEDG-PDMDAVEELVKNP---QVKGMWVVPVFSNPTGFTVTEDVAKRLSAM 209 (427)
T ss_dssp CEEEEEESCCHHHHHHHHHTTCEEEEEEEETTE-ECHHHHHHHTTST---TEEEEEECCSSCTTTCCCCCHHHHHHHHHC
T ss_pred CEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCCC-CCHHHHHHHHhcC---CCeEEEECCCCCCCCCccCCHHHHHHHHHH
Confidence 357788888999988999999999999998887 9999999999421 11122222 2245553
Q ss_pred h-hhh-----hcC-------------------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCc
Q psy852 572 C-YRK-----SQG-------------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLY 620 (891)
Q Consensus 572 c-~~~-----ldG-------------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Y 620 (891)
| .++ .|. ....+-+..+.+|+++....+|+++...+ +.+.+.....+
T Consensus 210 a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~--l~~~~~~~~~~ 287 (427)
T 3ppl_A 210 ETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAE--NRKWYTGHAGI 287 (427)
T ss_dssp CCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHH--HHHHHHHHHHH
T ss_pred HhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHH--HHHHHHHHhhc
Confidence 5 431 111 11224556789999666678887776532 22222110000
Q ss_pred cccCCCCCccccCCcccccccccchHHHHHHHHHHH-h----hHHHHHHHHHHHHHHHHHHh----ccCCCcEEeCCCce
Q psy852 621 LQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-S----GLQKYIRRHCELAKLFEGKV----RRDPRFEISNDVRL 691 (891)
Q Consensus 621 l~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~----G~~~~i~~~~~lA~~L~~~L----~~~~~~eil~~~~~ 691 (891)
. .-....+.++.....+.. . .+.+..+...+..+++.+.| ...+++++..+...
T Consensus 288 ~-----------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g 350 (427)
T 3ppl_A 288 R-----------------GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGG 350 (427)
T ss_dssp H-----------------CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBS
T ss_pred c-----------------cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCcc
Confidence 0 001122334444444332 1 22333333334444454444 33445776655556
Q ss_pred eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-c-----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 692 GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS-Q-----EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 692 ~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~-~-----~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..+++++++. ....+.+.|.+.|+.+..+.. . .+...+ +++... ++++|+++++.|.+++.
T Consensus 351 ~~~~~~~~~~-------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~ 418 (427)
T 3ppl_A 351 YFISLDVVPG-------TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVL 418 (427)
T ss_dssp SCEEEECSTT-------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCcc-------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHH
Confidence 6778888542 356788888889987544221 1 234566 888655 99999999999998874
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-05 Score=88.54 Aligned_cols=261 Identities=13% Similarity=0.066 Sum_probs=149.4
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++++.+++.+.. + +++ +++||+|++..++.+++.....+.. ..+.-+|+....-|.+...++.+
T Consensus 102 ~~l~~~la~~~g~-~--~v~--~~~ggteA~~~al~~~~~~~~~~~~----------~g~~~vi~~~~~yh~~~~~~~~~ 166 (420)
T 2pb2_A 102 LRLGRKLIDATFA-E--RVL--FMNSGTEANETAFKLARHYACVRHS----------PFKTKIIAFHNAFHGRSLFTVSV 166 (420)
T ss_dssp HHHHHHHHHHSSC-S--EEE--EESSHHHHHHHHHHHHHHHHHHHTC----------TTCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHhhCCC-C--eEE--EeCCHHHHHHHHHHHHHHHhhhccC----------CCCCEEEEEeCCcCCcCHHHHHh
Confidence 4455566665531 2 455 7789999999999998875432210 01123555666777766666555
Q ss_pred cCc------------eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc------------hhhh---
Q psy852 526 AFV------------RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS------------CYRK--- 575 (891)
Q Consensus 526 ~gv------------~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~------------c~~~--- 575 (891)
.+. ++..+|.+ |+++|+++|++.++ .+++ .++.|... |.++
T Consensus 167 ~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~~~~----~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~ 237 (420)
T 2pb2_A 167 GGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDDHTC----AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQAL 237 (420)
T ss_dssp SSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCTTEE----EEEECSEETTTTSEECCHHHHHHHHHHHHHTTCE
T ss_pred cCCccccccCCCCCCCeEEecCC-----CHHHHHHHhccCce----EEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCE
Confidence 442 25666652 79999998875321 1122 22334311 3331
Q ss_pred --hc----CC-------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 576 --SQ----GI-------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 576 --ld----Gi-------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
+| |+ -..|.+++ +|+++..+++|+++.+++ +.+.+.. . .. ..+.
T Consensus 238 lI~Dev~~g~~~~g~~~~~~~~~~~~diit~--sK~l~~G~~iG~~~~~~~--l~~~l~~--~--~~---------~~t~ 300 (420)
T 2pb2_A 238 LVFDEVQCGMGRTGDLFAYMHYGVTPDILTS--AKALGGGFPVSAMLTTQE--IASAFHV--G--SH---------GSTY 300 (420)
T ss_dssp EEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECHH--HHTTCC-----------------CCEE
T ss_pred EEEEcCCcCcccCCcHHHHHhcCCCCCeEEe--cccccCCCceEEEEEhHH--HHHhhcC--C--Cc---------Cccc
Confidence 11 11 12587765 799997788999999764 3222211 0 00 0111
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecCCcchhhhhhHHH
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRSENNLIADQNNRK 712 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~ 712 (891)
. .-++.......+|+.+.. .+..++..+++++|.+.|++. +.+..+ ++..+++.|.+.+.. .....+
T Consensus 301 ~-~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~~----~~~~~~ 371 (420)
T 2pb2_A 301 G-GNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPKY----KGRARD 371 (420)
T ss_dssp C-CCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECGGG----TTCHHH
T ss_pred C-cCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecceEEEEEECCCc----hHHHHH
Confidence 1 111222233344444433 456677778888888888764 332222 234467778775320 113567
Q ss_pred HHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 713 LLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 713 L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+.+.|.+.|+++..+ +...+ +++...+|++|++++++.|++++.
T Consensus 372 l~~~l~~~Gi~v~~~----~~~~iRl~~~~~~t~eei~~~~~~l~~~l~ 416 (420)
T 2pb2_A 372 FLYAGAEAGVMVLNA----GADVMRFAPSLVVEEADIHEGMQRFAQAVG 416 (420)
T ss_dssp HHHHHHHTTEECEES----STTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEeC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 888998899874332 24456 888778999999999999998764
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.9e-05 Score=88.13 Aligned_cols=261 Identities=10% Similarity=0.060 Sum_probs=139.1
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCcccccccccc-ceEEEecccchHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLS-KLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~-~~vI~~S~~aH~Sv~Kaa~ 524 (891)
.++++.+++.+. .+ +++ +++||+|+|..++.++|...... .|...+ +-+|+....-|.+...++.
T Consensus 110 ~~l~~~la~~~g-~~--~v~--~~~sGseA~~~al~~a~~~~~~~---------~g~~~gr~~vi~~~~~yhg~~~~~~~ 175 (433)
T 1z7d_A 110 GICERYLTNLLG-YD--KVL--MMNTGAEANETAYKLCRKWGYEV---------KKIPENMAKIVVCKNNFSGRTLGCIS 175 (433)
T ss_dssp HHHHHHHHHHHT-CS--EEE--EESSHHHHHHHHHHHHHHHHHHT---------SCCCTTCCEEEEETTC----------
T ss_pred HHHHHHHHhhcC-CC--eEE--EeCCHHHHHHHHHHHHHHHhhhc---------cCCCCCCCeEEEEeCCcCCcchhhhc
Confidence 445555555553 12 455 67899999999999988643211 111112 3345555566766655544
Q ss_pred HcC------------ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe----cCCccc------------hhhh-
Q psy852 525 MAF------------VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST----TLGTTS------------CYRK- 575 (891)
Q Consensus 525 l~g------------v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva----taGTT~------------c~~~- 575 (891)
+.+ .++..+|.+ |+++|+++|+.. .+-++++. +.|... |.++
T Consensus 176 ~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~----~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 246 (433)
T 1z7d_A 176 ASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDP----NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYN 246 (433)
T ss_dssp ----------------CEEEECTT-----CHHHHHHHHTST----TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred ccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCC----CEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcC
Confidence 433 245566653 899999999521 12222222 235432 4331
Q ss_pred ----hc----CC-------------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccC
Q psy852 576 ----SQ----GI-------------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 633 (891)
Q Consensus 576 ----ld----Gi-------------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~ 633 (891)
+| |+ -..|.+++ .|++++. +..|+++.+++ +.+.+.. .. ..
T Consensus 247 ~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~--sK~l~~G~~~~G~v~~~~~--~~~~l~~--~~-----------~~ 309 (433)
T 1z7d_A 247 VLFVADEVQTGLGRTGKLLCVHHYNVKPDVILL--GKALSGGHYPISAVLANDD--IMLVIKP--GE-----------HG 309 (433)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEECHH--HHTTCCT--TC-----------CC
T ss_pred CEEEEecCccCCCcCCcchhhHhcCCCCCEEEE--CccccCCCCCeEEEEECHH--HHhhhcc--cc-----------cc
Confidence 11 11 12577755 5999865 56899998754 2222111 00 01
Q ss_pred CcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecCCcchhhhhh
Q psy852 634 WGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRSENNLIADQN 709 (891)
Q Consensus 634 ~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~~~~~~~d~l 709 (891)
.+.. .-+........+|+.+..+ +..++..+++++|.+.|++. +.+..+ +...+++.|.+.+. ...
T Consensus 310 ~t~~-~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~~g~~~~i~~~~~-----~~~ 379 (433)
T 1z7d_A 310 STYG-GNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRDV-RGKGLLCAIEFKNE-----LVN 379 (433)
T ss_dssp CTTT-TCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECTT-----TCC
T ss_pred ccCC-CCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeeeeEEEEEEccC-----hhH
Confidence 1111 1122223334455544433 34566677888888888654 322221 22346778887532 023
Q ss_pred HHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 710 NRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..++.+.|.++|+++. +. +...+ ++++..+|++|||++++.|++++.
T Consensus 380 ~~~~~~~l~~~Gv~v~-~~---~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 427 (433)
T 1z7d_A 380 VLDICLKLKENGLITR-DV---HDKTIRLTPPLCITKEQLDECTEIIVKTVK 427 (433)
T ss_dssp HHHHHHHHHHTTEECC-EE---TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEe-cC---CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence 5678889988998743 22 34566 888888999999999999998764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=98.34 E-value=9.2e-06 Score=90.96 Aligned_cols=93 Identities=9% Similarity=-0.043 Sum_probs=70.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecc-cCccccccCHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLG-TTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~G-tt~~GavDpl~~I~~i~ 221 (891)
.|+++.-+|.+....+...|.+++.++++ +++.+|+++|++.+++....+ ...+|+++.. +|.+|.+-|.+++.+++
T Consensus 128 ~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPtG~~~~~~~l~~l~ 206 (418)
T 3rq1_A 128 EVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNPTGYSIEDKDWDSIL 206 (418)
T ss_dssp EEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred EEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence 37777788988888888888899999984 567999999999998632111 1235555555 89999998877666554
Q ss_pred ---H------HcCCceeeeccccCC
Q psy852 222 ---K------EFDVWLHVDGAYAGS 237 (891)
Q Consensus 222 ---~------~~~~~lHvDaA~GG~ 237 (891)
+ ++|+++++|.+|.++
T Consensus 207 ~~~~~~~~~~~~~~~li~De~y~~~ 231 (418)
T 3rq1_A 207 NFLKDLVAIGRNNVIIGIDVAYLDY 231 (418)
T ss_dssp HHHHHHHHTSSCEEEEEEECTTGGG
T ss_pred HHHHHhhhccCCCeEEEEecccccc
Confidence 4 889999999998553
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-05 Score=87.28 Aligned_cols=238 Identities=11% Similarity=-0.024 Sum_probs=147.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+... . ...-.|++..-+|.+...++...|.+++.+|.++++.++
T Consensus 84 ~i~--~t~g~~~al~~~~~~~~~----~-------------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 144 (376)
T 3ezs_A 84 ELI--STLGSREVLFNFPSFVLF----D-------------YQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFT 144 (376)
T ss_dssp GEE--EESSSHHHHHHHHHHHTT----T-------------CSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSC
T ss_pred HEE--ECcCcHHHHHHHHHHHcC----C-------------CCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcc
Confidence 566 789999999988766421 0 002257788888999999988899999999998776677
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcC------------------------C
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQG------------------------I 579 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldG------------------------i 579 (891)
+ +|++++.++.+ .++++ +..|++. |.++ +|. .
T Consensus 145 ~-~l~~~~~~~~~----~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (376)
T 3ezs_A 145 P-SLNEKELQEVD----LVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEA 219 (376)
T ss_dssp C-CCCHHHHHHCS----EEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTT
T ss_pred h-hHHhhhccCCC----EEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccc
Confidence 7 77787765321 22222 2245543 3331 111 1
Q ss_pred CCccEEEEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-Hh
Q psy852 580 EYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LS 657 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~ 657 (891)
...+-+..+.||+++ ....+|+++...+ +.+.+.....+ ..++ ...+.+++....+. .+
T Consensus 220 ~~~~i~~~s~sK~~g~~G~r~G~~~~~~~--~~~~~~~~~~~-----------~~~~------~~~~~~~a~~~~l~~~~ 280 (376)
T 3ezs_A 220 FKNVLVIHSLSKRSSAPGLRSGFIAGDSR--LLEKYKAFRAY-----------LGYT------SANAIQKASEAAWLDDR 280 (376)
T ss_dssp CTTEEEEEESTTTTTCGGGCCEEEEECHH--HHHHHHHHHTT-----------TCCC------CCHHHHHHHHHHHHCSH
T ss_pred cCcEEEEecchhccCCccceeEEEeeCHH--HHHHHHHHHhh-----------hcCC------CChHHHHHHHHHHhCcH
Confidence 234567789999996 4567888876432 22222110000 0011 11233333333333 23
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeecccc----C
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQE----Q 732 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~~----g 732 (891)
.+++..++..++.+++.+.|+ ++. .+.....++++++ ...++.+.|.+ .|+.+..+.... +
T Consensus 281 ~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~ 346 (376)
T 3ezs_A 281 HAEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQ---------NGENFAKTLYQNEGIITLPALYLGRNRIG 346 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECS---------CHHHHHHHHHHHHCCBCEEGGGGCSTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECC---------CHHHHHHHHHHhCCEEEeCcHHhCCCCCC
Confidence 367777778888899999887 443 3334456677764 24577888877 798865544332 4
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+ ++++. ++++|+++++.|++++
T Consensus 347 ~~~iRis~~~--~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 347 ADYVRLALVY--DTPLLEKPLEIIETYR 372 (376)
T ss_dssp TTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcC--CHHHHHHHHHHHHHHH
Confidence 4566 88763 8999999999998775
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-05 Score=90.44 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=59.7
Q ss_pred EEEecCCCChHHHHHHHHcCC------------eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc-
Q psy852 144 MAYCSKEAHSCVEKAAMMAFV------------RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS- 210 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~------------~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga- 210 (891)
+|+.+..-|.+...++.+.+. .+..++.+ |+++|++.+++. +.+|+++..++..|.
T Consensus 149 vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~~------~~~vi~~p~~~~gG~~ 217 (420)
T 2pb2_A 149 IIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDDH------TCAVVVEPIQGEGGVQ 217 (420)
T ss_dssp EEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCTT------EEEEEECSEETTTTSE
T ss_pred EEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhccC------ceEEEEeCCcCCCCee
Confidence 455556667776666554332 26666643 899999988643 446666666666665
Q ss_pred ---ccCHHHHHHHHHHcCCceeeeccccCC
Q psy852 211 ---FDNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 211 ---vDpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
.+++++|+++|+++|++|++|.++.|+
T Consensus 218 ~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~ 247 (420)
T 2pb2_A 218 AATPEFLKGLRDLCDEHQALLVFDEVQCGM 247 (420)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEcCCcCc
Confidence 488999999999999999999999664
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=6.3e-06 Score=92.18 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=134.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH----HHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka----a~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|++++..++.+.. .+.-.|+++...|.+.... +...|++++.+|. .|+
T Consensus 79 ~~~sG~~ai~~~~~~~~-------------------~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~-----~d~ 134 (389)
T 3acz_A 79 AFGSGMGAISSSTLAFL-------------------QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT-----SDV 134 (389)
T ss_dssp EESSHHHHHHHHHTTTC-------------------CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT-----TCH
T ss_pred EeCCHHHHHHHHHHHHh-------------------CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC-----CCH
Confidence 35567899887765531 0122578888889887666 3557889999987 389
Q ss_pred HHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcC-----C------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQG-----I------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldG-----i------~~aDSIs~d~HK~L~~P 596 (891)
++|+++|+++++ .+++.. ..|... |+++ +|. . ..+|.+..++||++++|
T Consensus 135 ~~l~~~i~~~~~----~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~ 210 (389)
T 3acz_A 135 EKVKAAWKPNTK----MVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGH 210 (389)
T ss_dssp HHHHHTCCTTEE----EEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCS
T ss_pred HHHHHhcCCCCe----EEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCC
Confidence 999998875321 222221 233333 4331 221 1 24799999999999999
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
.+ +|+++.++.+.+. .+.....+ ++. ....+..|..++.+ +.+...+++..++++++.
T Consensus 211 ~~~~~G~v~~~~~~~~~-~l~~~~~~-------------~g~----~~~~~~~~~~~~~l--~~l~~r~~~~~~~~~~l~ 270 (389)
T 3acz_A 211 GDVIGGVSSAKTAEDIA-TIKFYRKD-------------AGS----LMAPMDAFLCARGM--KTLPIRMQIHMENGLKVA 270 (389)
T ss_dssp SCCCCEEEEESSHHHHH-HHHHHHHH-------------HCC----CCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEEECcHHHHH-HHHHHHHh-------------cCC----CCCHHHHHHHHcCc--cHHHHHHHHHHHHHHHHH
Confidence 88 6888887623222 11100000 000 01234456555543 456666777778888888
Q ss_pred HHhccCCCcEEeC-----------------CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe---e------c
Q psy852 675 GKVRRDPRFEISN-----------------DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV---P------A 728 (891)
Q Consensus 675 ~~L~~~~~~eil~-----------------~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s---~------s 728 (891)
+.|++.+.++-+. +...++++|.+.+ .+.+...|.+.|++... + +
T Consensus 271 ~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~---------~~~~~~~l~~~~i~~~~~s~G~~~sl~~ 341 (389)
T 3acz_A 271 KFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS---------FEAAKKLMEHLKVCTLAVSLGCVDTLIE 341 (389)
T ss_dssp HHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---------HHHHHHHHTTCSSSEEBSCCCCSSCEEE
T ss_pred HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC---------HHHHHHHHHhCCCcEECcCCCCcccEee
Confidence 8887765443211 0125789999853 23444555566765433 1 1
Q ss_pred cc---------------cC--CeEE-EEecCCCCHHHHHHHHHHH
Q psy852 729 SQ---------------EQ--NDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 729 ~~---------------~g--~~~l-~sv~~~tT~edId~li~~L 755 (891)
.+ .+ ...+ +|++...++++|+.+.++|
T Consensus 342 ~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al 386 (389)
T 3acz_A 342 HPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQAL 386 (389)
T ss_dssp CTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHH
Confidence 00 11 3567 9998876666666665554
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.2e-05 Score=83.29 Aligned_cols=163 Identities=9% Similarity=-0.123 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLP-EKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
.|.++..+...+-..........+. ....+..+.+++++|.+ .+.. .+
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~~~~~--~~~~~l~~~la~~~~~~~~~~v-----------------------------~~ 109 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLAHAAANDFYN--IPQLELAKKLVTYSPGNFQKKV-----------------------------FF 109 (419)
T ss_dssp CHHHHHHHHHHHTTSCCCSCSCSCC--HHHHHHHHHHHHHSSCSSCEEE-----------------------------EE
T ss_pred CHHHHHHHHHHHhhCccccccccCC--HHHHHHHHHHHHhCCCCcCCEE-----------------------------EE
Confidence 5777776666543221111111221 22334457788888875 2211 14
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcC-------------CeEEEEecCCCC
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF-------------VRLKILEPDDKN 175 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~-------------~~v~~V~~d~~g 175 (891)
++||+...+ .++.+++... ++-+|+....-|.+...++.+.+ ..++.|+.+++.
T Consensus 110 ~~gg~ea~~-~ai~~~~~~~------------~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 176 (419)
T 2eo5_A 110 SNSGTEAIE-ASIKVVKNTG------------RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPY 176 (419)
T ss_dssp ESSHHHHHH-HHHHHHHTTS------------CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSS
T ss_pred eCchHHHHH-HHHHHHHHhh------------CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccc
Confidence 578876543 3343444321 12245555566766655553321 267888886653
Q ss_pred c----------------ccHHHHH-HHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccc
Q psy852 176 S----------------LRGATLR-QVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 176 ~----------------id~~~L~-~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~ 234 (891)
+ +|+++|+ +.+++.. ....+.+|+++-.++.+|.+-| +++|+++|+++|++||+|.+|
T Consensus 177 ~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~ 255 (419)
T 2eo5_A 177 RNPWHINGYENPSELVNRVIEFIEDYIFVNLV-PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQ 255 (419)
T ss_dssp SCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTT
T ss_pred cccccccccccchhhHHHHHHHHHHHHHhhcc-CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 3 5789999 8887421 0012456777766777898777 999999999999999999999
Q ss_pred cCC
Q psy852 235 AGS 237 (891)
Q Consensus 235 GG~ 237 (891)
.|+
T Consensus 256 ~~~ 258 (419)
T 2eo5_A 256 MGL 258 (419)
T ss_dssp TTT
T ss_pred cCC
Confidence 664
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-05 Score=87.02 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=72.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhh------hcCCcceEE-EeecccCccccccCHH-
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDE------TMGYIPFFV-STTLGTTSCCSFDNLA- 215 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~------~~g~~p~~V-~~t~Gtt~~GavDpl~- 215 (891)
.|++..-+|.+....+...|.+++.|+++++| +|+++|++.+++.. ..+..+.+| +....+|.||.+-|.+
T Consensus 134 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~ 212 (425)
T 2r2n_A 134 NVLLDEPAYSGTLQSLHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSER 212 (425)
T ss_dssp EEEEESSCCHHHHHHHGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHH
T ss_pred EEEEeCCCcHHHHHHHHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHH
Confidence 37777888999888887778899999998765 99999999987321 001123455 4467889999998866
Q ss_pred --HHHHHHHHcCCceeeeccccCC
Q psy852 216 --EIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 216 --~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++|+++|++|++|.+|+++
T Consensus 213 l~~l~~~a~~~~~~li~De~~~~~ 236 (425)
T 2r2n_A 213 KKEIYELARKYDFLIIEDDPYYFL 236 (425)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGG
T ss_pred HHHHHHHHHHcCCEEEEECCcccc
Confidence 9999999999999999999653
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-06 Score=95.66 Aligned_cols=236 Identities=11% Similarity=0.062 Sum_probs=136.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~ 544 (891)
.++|++++..++. . .+ +.-.|+++...|.+..... ...|++++.+|.+ | +
T Consensus 76 ~~sGt~a~~~al~-~----~~---------------~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d-~ 129 (393)
T 1n8p_A 76 FSSGSATTATILQ-S----LP---------------QGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL-----L-N 129 (393)
T ss_dssp ESCHHHHHHHHHH-T----SC---------------SSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH-----H-H
T ss_pred ECChHHHHHHHHH-H----cC---------------CCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC-----h-H
Confidence 4455899887765 2 10 1124677777887665543 3457788888875 6 7
Q ss_pred HHHHHHHhhhhcCCccEEE---EecCCccc--------hhhh---------hcCC-----------CCccEEEEcCcccC
Q psy852 545 TLRQVMQQDETMGYIPFFV---STTLGTTS--------CYRK---------SQGI-----------EYADSFNVNVNKWL 593 (891)
Q Consensus 545 ~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~~---------ldGi-----------~~aDSIs~d~HK~L 593 (891)
+|+++|++.+ ..+++ ++..|+.. |+++ +|++ -.+|.+..++||++
T Consensus 130 ~l~~~i~~~t----~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~ 205 (393)
T 1n8p_A 130 DLPQLIKENT----KLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYI 205 (393)
T ss_dssp HHHHHSCSSE----EEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTT
T ss_pred HHHHhcccCc----eEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccc
Confidence 8888876421 11222 12345543 4333 1221 14799999999988
Q ss_pred Cccc-cc-EEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy852 594 LTAF-DS-SCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAK 671 (891)
Q Consensus 594 ~~P~-g~-G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~ 671 (891)
+.|- .. |+++.++++.+......... + +-....+..|..++ +.+.+...+++..++++
T Consensus 206 g~~G~rigG~~~~~~~~~~~~l~~~~~~--------------~----g~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~ 265 (393)
T 1n8p_A 206 NGHSDVVLGVLATNNKPLYERLQFLQNA--------------I----GAIPSPFDAWLTHR--GLKTLHLRVRQAALSAN 265 (393)
T ss_dssp TCSSCCCCEEEEESCHHHHHHHHHHHHH--------------H----CCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHH
T ss_pred cCCCCceeEEEEeCCHHHHHHHHHHHHh--------------c----CCCCCHHHHHHHHh--ccchHHHHHHHHHHHHH
Confidence 8543 15 77777654433221111000 0 00112334454433 34556777788888889
Q ss_pred HHHHHhccCCC-cEEe-CC-----C------------c-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec---
Q psy852 672 LFEGKVRRDPR-FEIS-ND-----V------------R-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA--- 728 (891)
Q Consensus 672 ~L~~~L~~~~~-~eil-~~-----~------------~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s--- 728 (891)
++.+.|++.+. +.-+ .+ + . .++++|.+.+. ....+.+++.|...++....++
T Consensus 266 ~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-----~~~~~~~l~~l~~~~~~~s~G~~~s 340 (393)
T 1n8p_A 266 KIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-----AEAASKFASSTRLFTLAESLGGIES 340 (393)
T ss_dssp HHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-----HHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred HHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc-----HHHHHHHHhhCCcceECCCCCCCcc
Confidence 99999988765 5422 11 1 2 57999999643 2345566666654333221110
Q ss_pred --------cc----------cC--CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 --------SQ----------EQ--NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 --------~~----------~g--~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.. .+ ...+ +|++..+++++|+.+.++|+++.
T Consensus 341 ~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 341 LLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp EEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred eeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 10 11 3567 99999999999999999998753
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-05 Score=87.03 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHhccC--CCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 660 QKYIRRHCELAKLFEGKVRRD--PRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~--~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
++..++..++++++.+.|++. +.+... ++..+++.|.+.+ ...++.+.|.+.|+.+..+ +...+
T Consensus 302 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~--------~~~~l~~~l~~~gi~v~~~----~~~~iR 368 (392)
T 3ruy_A 302 EKLTERSLQLGEKLVGQLKEIDNPMITEV-RGKGLFIGIELNE--------PARPYCEQLKAAGLLCKET----HENVIR 368 (392)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCCTTEEEE-EEETTEEEEEESS--------CSHHHHHHHHTTTEECCCB----TTTEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCceEE-EeeeeEEEEEEcc--------hHHHHHHHHHHCCcEEecC----CCCEEE
Confidence 566777888999999999886 233332 2345677777643 3457888888899773322 24566
Q ss_pred EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++..+|++|++++++.|++++
T Consensus 369 i~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 369 IAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHh
Confidence 98888899999999999998764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-05 Score=87.56 Aligned_cols=246 Identities=9% Similarity=-0.026 Sum_probs=147.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCC-Cc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN-SL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G-~m 541 (891)
+|+ +++|+++++..++.+.... |....+..|+++.-.|.+...++...|.+++.+|.+++| .+
T Consensus 93 ~i~--~t~g~~~al~~~~~~~~~~--------------g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~ 156 (396)
T 3jtx_A 93 EIL--PVLGSREALFSFVQTVLNP--------------VSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNP 156 (396)
T ss_dssp SEE--EESSHHHHHHHHHHHHCCC-----------------CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCC
T ss_pred eEE--EcCCcHHHHHHHHHHHhCC--------------CCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCcc
Confidence 455 6889999998887765220 000012357788888999988888899999999996655 68
Q ss_pred CHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C---------------
Q psy852 542 RGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G--------------- 578 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G--------------- 578 (891)
|+++|++++.+.+ ..++++. ..|++. |.++ +| |
T Consensus 157 d~~~l~~~~~~~~----~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 232 (396)
T 3jtx_A 157 DWRSISEEVWKRT----KLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGR 232 (396)
T ss_dssp CGGGSCHHHHHTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTC
T ss_pred CHHHHHHhhccCc----EEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhccc
Confidence 9999999998632 2233322 245543 3331 11 1
Q ss_pred CCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-H
Q psy852 579 IEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-L 656 (891)
Q Consensus 579 i~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~ 656 (891)
-...+-+..+.+|.++.| ..+|+++.. ++.+ +.+.....+ ..++ ...+.+++....+. .
T Consensus 233 ~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~-~~~~~~~~~-----------~~~~------~~~~~~~a~~~~l~~~ 293 (396)
T 3jtx_A 233 SRQKLLMFTSLSKRSNVPGLRSGFVAGD-AELL-KNFLLYRTY-----------HGSA------MSIPVQRASIAAWDDE 293 (396)
T ss_dssp CCTTEEEEEESTTTSSCGGGCCEEEEEC-HHHH-HHHHHHHHH-----------HTCC------CCHHHHHHHHHHHHCC
T ss_pred ccCcEEEEeccccccCCcccceEEEEeC-HHHH-HHHHHHHhh-----------cccC------CCHHHHHHHHHHhCCH
Confidence 023456778899965444 678887653 3222 222110000 0001 11233333333332 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc-----
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ----- 730 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~----- 730 (891)
+.+.+..++..++.+++.+.|++. +.+..+.....+++++... ....+.+.|. +.|+.+..+...
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 364 (396)
T 3jtx_A 294 QHVIDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIWLKVPDG-------DDLAFARNLWQKAAIQVLPGRFLARDTE 364 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCccCCCeeEEEEEECCCC-------CHHHHHHHHHHHCCEEEeCChHhCCccc
Confidence 446667777788888999999875 3343333445677777532 3457777774 469876554432
Q ss_pred ---cCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 731 ---EQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 731 ---~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.+...+ ++++. ++++|+++++.|+++
T Consensus 365 ~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~ 394 (396)
T 3jtx_A 365 QGNPGEGYVRIALVA--DVATCVKAAEDIVSL 394 (396)
T ss_dssp TCCTTTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEEcC--CHHHHHHHHHHHHHH
Confidence 234566 88765 899999999998865
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-05 Score=91.21 Aligned_cols=273 Identities=13% Similarity=0.073 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhcCCC-----CCcc-ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccccccc-CCC
Q psy852 30 YPSVLADMLSDAIGCI-----GFSW-AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDY-MTP 102 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~-----~~~~-~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~-~t~ 102 (891)
-|.++..+-+.+.|-. +--| ..+-...++|..+++...+|||.+... |+. +-|
T Consensus 67 S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~--------------------w~VNVQP 126 (490)
T 3ou5_A 67 SRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQ--------------------WGVNVQP 126 (490)
T ss_dssp CHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTT--------------------EEEECCC
T ss_pred CHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccc--------------------cCCCCCc
Confidence 3555555555555543 2222 345678899999999999999998652 111 111
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEe---cCCCChHHH-----HHHHHcC--CeEEEEecC
Q psy852 103 ANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYC---SKEAHSCVE-----KAAMMAF--VRLKILEPD 172 (891)
Q Consensus 103 ~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~---S~~~H~Sv~-----kaa~~~~--~~v~~V~~d 172 (891)
.+|+.+|.+....+ -+.+. .|+. +.-.|.|-- +.....+ .+...-++|
T Consensus 127 -------~SGs~AN~avy~Al--l~PGD-------------~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd 184 (490)
T 3ou5_A 127 -------YSGSPANLAVYTAL--LQPHD-------------RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN 184 (490)
T ss_dssp -------SSHHHHHHHHHHHH--CC-CC-------------CEECBC----------------------------CBCEE
T ss_pred -------CCHHHHHHHHHHHH--cCCCC-------------EEEecccCCCCcccccccCCCcccccccccccccccccC
Confidence 35654332222222 21110 1111 122233321 1111112 244445667
Q ss_pred -CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCC
Q psy852 173 -DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251 (891)
Q Consensus 173 -~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~ 251 (891)
++|.||.+++++...+.+ |-+|++ |.+..--.-|++++.+||++.|.++++|.|+ +.|+
T Consensus 185 ~~t~~IDyd~~~~~A~~~k-----PklIi~--G~SaY~r~id~~~~reIAd~vGA~Lm~DmAH-------------iaGL 244 (490)
T 3ou5_A 185 PKTGLIDYNQLALTARLFR-----PRLIIA--GTSAYARLIDYARMREVCDEVKAHLLADMAH-------------ISGL 244 (490)
T ss_dssp TTTTEECHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHHHHHHHTCEEEEECGG-------------GHHH
T ss_pred CCCCcccHHHHHHHHhhcC-----CCeEEE--CCccCccccCHHHHHHHHhhcccEEEechhh-------------hhhh
Confidence 569999999999888764 666654 5566677789999999999999999999998 0110
Q ss_pred cccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccccccc
Q psy852 252 TSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIF 331 (891)
Q Consensus 252 ~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (891)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T 3ou5_A 245 -------------------------------------------------------------------------------- 244 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCccccc
Q psy852 332 DVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYR 411 (891)
Q Consensus 332 ~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~ 411 (891)
-+++.+-+| +++||.+|.+.||.+-+|-+ |++++|+...-.. .....-+.......+|..
T Consensus 245 ---------VA~g~~psP--------~~~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~~--~k~~~~~~~~~~kkin~a 304 (490)
T 3ou5_A 245 ---------VAAKVIPSP--------FKHADIVTTTTHKTLRGARS-GLIFYRKGVKAVD--PKTGREIPYTFEDRINFA 304 (490)
T ss_dssp ---------HHTTSSCCG--------GGTCSEEEEESSSTTCSCSC-EEEEEECSEEEEC--C--CCEEECCCHHHHHHH
T ss_pred ---------hcccccCCc--------cccceEEeccccccccCCCc-eEEEecccccccc--ccccchhHHHHHHHHHhh
Confidence 011222222 24689999999999999987 8999887532100 000000000000111111
Q ss_pred -ccccCCCCChhH-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q psy852 412 -HWGIPLSRRFRS-LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 412 -~~~~~~sr~~~~-l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv 465 (891)
-.+++++-.... .+.-.+++.--...+.+..++.+++|+.|++.|.+ .||.|+
T Consensus 305 VFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~-~G~~vv 359 (490)
T 3ou5_A 305 VFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE-RGYSLV 359 (490)
T ss_dssp HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEG
T ss_pred cCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh-CCCeee
Confidence 123444444433 23334455545566788999999999999999977 588887
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-05 Score=87.24 Aligned_cols=62 Identities=10% Similarity=0.070 Sum_probs=50.4
Q ss_pred eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 165 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 165 ~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
++..++.+ |+++|++++++. +.+|++...++.+|.+.| +++|+++|++||++||+|.++.|+
T Consensus 160 ~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~ 225 (395)
T 3nx3_A 160 GVKFAKYN-----DISSVEKLVNEK------TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGM 225 (395)
T ss_dssp CEEEECTT-----CHHHHHTTCCTT------EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CcEEeCCC-----CHHHHHHhccCC------eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 55666643 699999888643 357777778888899988 999999999999999999999764
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-06 Score=93.21 Aligned_cols=88 Identities=7% Similarity=-0.065 Sum_probs=72.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEee-cccCccccccCHH---HHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT-LGTTSCCSFDNLA---EIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t-~Gtt~~GavDpl~---~I~~ 219 (891)
.|++..-+|.+....+...|.+++.||+|++| +|+++|+++++... +.+|+++ ..+|.||.+-|.+ +|++
T Consensus 135 ~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~-----~~~v~~~p~~~NPtG~~~~~~~~~~l~~ 208 (427)
T 3ppl_A 135 KWICPVPGYDRHFSITERFGFEMISVPMNEDG-PDMDAVEELVKNPQ-----VKGMWVVPVFSNPTGFTVTEDVAKRLSA 208 (427)
T ss_dssp EEEEEESCCHHHHHHHHHTTCEEEEEEEETTE-ECHHHHHHHTTSTT-----EEEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEcCCCcHHHHHHHHHcCCEEEEeCCCCCC-CCHHHHHHHHhcCC-----CeEEEECCCCCCCCCccCCHHHHHHHHH
Confidence 47777888999988888888899999999887 99999999884221 3355544 7899999998888 8888
Q ss_pred HH-HHcCCceeeeccccCC
Q psy852 220 VA-KEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~-~~~~~~lHvDaA~GG~ 237 (891)
+| +++|++|++|.+|+++
T Consensus 209 ~a~~~~~~~ii~De~y~~~ 227 (427)
T 3ppl_A 209 METAAPDFRVVWDNAYAVH 227 (427)
T ss_dssp CCCSSTTCEEEEECTTTTC
T ss_pred HHhhcCCCEEEEECCCccc
Confidence 88 8999999999999653
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.5e-05 Score=85.50 Aligned_cols=258 Identities=13% Similarity=0.079 Sum_probs=139.8
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++++++++.+. +. +++ +++||+|+|..++.+++...... | ..++-+|+....-|-+...+..+
T Consensus 81 ~~l~~~la~~~~--~~-~v~--~~~gg~ea~~~al~~~~~~~~~~----------g-~~~~~vi~~~~~yhg~~~~~~~~ 144 (395)
T 3nx3_A 81 AAAAKNLAKASA--LE-RVF--FTNSGTESIEGAMKTARKYAFNK----------G-VKGGQFIAFKHSFHGRTLGALSL 144 (395)
T ss_dssp HHHHHHHHHHHT--CS-EEE--EESSHHHHHHHHHHHHHHHHHHT----------T-CTTCEEEEETTCCCCSSHHHHTT
T ss_pred HHHHHHHHHhcC--CC-eEE--EeCCHHHHHHHHHHHHHHHhhcc----------C-CCCCEEEEEcCCcCCCCHHHHhh
Confidence 345555555554 22 455 78899999999999888654322 1 11233555555555444333322
Q ss_pred c------------CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc------------hhhh---
Q psy852 526 A------------FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS------------CYRK--- 575 (891)
Q Consensus 526 ~------------gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~------------c~~~--- 575 (891)
. +.++..+|.+ |+++|+++|+++++ -+++ .++.|+.. |.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~----~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 215 (395)
T 3nx3_A 145 TANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNEKTC----AIILESVQGEGGINPANKDFYKALRKLCDEKDIL 215 (395)
T ss_dssp CCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTTEE----EEEEESEECTTSCEECCHHHHHHHHHHHHHHTCE
T ss_pred cCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccCCeE----EEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 2 2345555543 68888888764321 1222 22334432 3331
Q ss_pred --hcC----C-------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 576 --SQG----I-------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 576 --ldG----i-------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
+|. + -..|.++++ |.++.++++|+++.+++.. .+.+.. . . . ..+.
T Consensus 216 li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~~~~-~~~~~~--~-~-~---------~~~~ 279 (395)
T 3nx3_A 216 LIADEIQCGMGRSGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVINQKVA-SNSLEA--G-D-H---------GSTY 279 (395)
T ss_dssp EEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEECHHHH-HHHSCT--T-C-C---------SSCB
T ss_pred EEEEecccCCCcCCcchhHHhcCCCCCEEEec--ccccCCCceEEEEEchhhh-hhhcCC--c-c-c---------CCCC
Confidence 111 0 124777775 8887778899998876520 222210 0 0 0 0011
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----CCCcEEeCCCceeEEEEEecCCcchhhhhhHHH
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR----DPRFEISNDVRLGLVCFRLRSENNLIADQNNRK 712 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~----~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~ 712 (891)
. ...+.+.+.+..+....-++.+++..++.+++.+.|++ .+.+... +...+++.|.+.+. .....
T Consensus 280 ~----~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~------~~~~~ 348 (395)
T 3nx3_A 280 G----GNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKR-KGLGFMQGLSLDKS------VKVAK 348 (395)
T ss_dssp S----CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTT------SCHHH
T ss_pred C----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCCc------chHHH
Confidence 1 12233333333332111123344455555555555543 4444332 22346777887542 24567
Q ss_pred HHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 713 LLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 713 L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.+.|.++|+++..+ +...+ ++++..+|++|++++++.|++++
T Consensus 349 ~~~~l~~~Gi~v~~~----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 392 (395)
T 3nx3_A 349 VIQKCQENALLLISC----GENDLRFLPPLILQKEHIDEMSEKLRKAL 392 (395)
T ss_dssp HHHHHHHTTEECEEE----TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEecC----CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 888899999875433 24566 98888999999999999999876
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=8.7e-06 Score=90.18 Aligned_cols=91 Identities=9% Similarity=0.009 Sum_probs=74.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-+|++....+...+.+++.++.+ +++.+|+++|++.+++.. ..+.+++.+..+|.||.+-| +++|++
T Consensus 120 vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~~~~~~nptG~~~~~~~l~~i~~ 196 (394)
T 2ay1_A 120 VFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAK---KGDMVLLHGCCHNPTGANLTLDQWAEIAS 196 (394)
T ss_dssp EEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCC---TTCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 6677788999888887677789999986 678899999999997531 12457777889999999976 557899
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|+++++|.+|+++.
T Consensus 197 ~~~~~~~~li~De~~~~~~ 215 (394)
T 2ay1_A 197 ILEKTGALPLIDLAYQGFG 215 (394)
T ss_dssp HHHHHTCEEEEEECCTTSS
T ss_pred HHHHCCCEEEEecCccccc
Confidence 9999999999999997654
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.6e-05 Score=87.77 Aligned_cols=278 Identities=12% Similarity=0.047 Sum_probs=135.6
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++++++++.+...+. +|+ +++||+|+|..++.+++.....+.. ..+..+|+....-|....-+..+
T Consensus 75 ~~l~~~la~~~~~~~~-~v~--~~~gg~ea~~~al~~~~~~~~~~g~----------~~~~~vi~~~~~yhg~~~~~~~~ 141 (430)
T 3i4j_A 75 EEYAGRLARFVGLPTF-RFW--AVSGGSEATESAVKLARQYHVERGE----------PGRFKVITRVPSYHGASLGSLAA 141 (430)
T ss_dssp HHHHHHHHHHTTCTTC-EEE--EESSHHHHHHHHHHHHHHHHHHTTC----------TTCCEEEEETTC-----------
T ss_pred HHHHHHHHHhCCCCCC-EEE--EeCcHHHHHHHHHHHHHHHHHhcCC----------CCCcEEEEEeCCcCCCCcccccc
Confidence 4556666666643333 566 7889999999999998876543211 11234455555555544333333
Q ss_pred cCc--------------eEEEecCCCC---CCcCHHHHHHHHHhhhhcCCccEEEE-ecCC-ccc---------------
Q psy852 526 AFV--------------RLKILEPDDK---NSLRGATLRQVMQQDETMGYIPFFVS-TTLG-TTS--------------- 571 (891)
Q Consensus 526 ~gv--------------~v~~Vp~d~~---G~mD~~~Le~aI~~d~~~g~ip~~Vv-ataG-TT~--------------- 571 (891)
.+. ++..+|.+.. +..|+++|+++|++... ..+.++++ ...| .+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~-~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l 220 (430)
T 3i4j_A 142 SGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGP-ETVAAFMAEPVVGASDAALAPAPGYYERVRDI 220 (430)
T ss_dssp --------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCG-GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHH
T ss_pred cCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCC-CCEEEEEEcCcccCcCCcccCCHHHHHHHHHH
Confidence 221 3344555443 55788999999975311 11222332 2234 222
Q ss_pred hhhh-----hc-------------------CCCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCC-CccccCC
Q psy852 572 CYRK-----SQ-------------------GIEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDP-LYLQHGH 625 (891)
Q Consensus 572 c~~~-----ld-------------------Gi~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~-~Yl~~~~ 625 (891)
|.++ +| ++ ..|.++++ |.++.- ..+|+++.+++ +.+.+.... .+..
T Consensus 221 ~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~-~~di~t~s--K~l~~G~~r~G~~~~~~~--i~~~~~~~~~~~~~--- 292 (430)
T 3i4j_A 221 CDEAGIIFIADEVMSGMGRCGSPLALSRWSGV-TPDIAVLG--KGLAAGYAPLAGLLAAPQ--VYETVMGGSGAFMH--- 292 (430)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGTTTC-CCSEEEEC--GGGTTTSSCCEEEEECHH--HHHHHHHTTCBCCC---
T ss_pred HHHcCCEEEEechhhCCCcccchhhhhhhcCC-CCcEEEEc--ccccCCccccEEEEECHH--HHHHHhccCCcccc---
Confidence 3331 11 11 14677765 988754 55788887443 222222111 0110
Q ss_pred CCCccccCCcccccccccchHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHhc----cCCCcEEeCCCceeEEEEEe
Q psy852 626 EGAIDYRHWGIPLSRRFRSLKLWF---VIRTYGLSGLQKYIRRHCELAKLFEGKVR----RDPRFEISNDVRLGLVCFRL 698 (891)
Q Consensus 626 e~~~~~~~~ti~~SRr~~aL~lW~---~L~~lG~~G~~~~i~~~~~lA~~L~~~L~----~~~~~eil~~~~~~iV~Fr~ 698 (891)
..+. ....+.+.+ +|+.+..+.+ +++..++.+++.+.|+ ..+.+..+. +..+.+.|.+
T Consensus 293 -------~~t~----~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~ 357 (430)
T 3i4j_A 293 -------GFTY----AGHPVSVAAGLSVLDIVEREDL---TGAAKERGAQLLAGLQALQARFPQMMQVR-GTGLLLGVVL 357 (430)
T ss_dssp -------CCTT----TTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEE
T ss_pred -------cCCC----CCCHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEE-EEEEEEEEEe
Confidence 0011 111233333 3333333333 3444444555554443 455554432 2345666776
Q ss_pred cCCcchhh---hhhHHHHHHHHHhCCcEEEeec-c--ccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 699 RSENNLIA---DQNNRKLLEDINASGRLHMVPA-S--QEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 699 ~~~~~~~~---d~ln~~L~~~L~~~G~~~~s~s-~--~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+...... +....++.+.|.++|+++..+. . ..+...+ ++++...|+++++++++.|+++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 426 (430)
T 3i4j_A 358 GDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALE 426 (430)
T ss_dssp C------------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 42210000 1234678889999998743221 1 1124456 888888899999999999998764
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=91.63 Aligned_cols=237 Identities=15% Similarity=0.094 Sum_probs=139.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~ 543 (891)
+++||++++..++.+. . .+.-.|+++...|.+....+. ..|++++.++.+ |+
T Consensus 102 ~~ssGt~Ai~~al~~l----~---------------~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-----d~ 157 (415)
T 2fq6_A 102 LFPCGAAAVANSILAF----I---------------EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IG 157 (415)
T ss_dssp EESSHHHHHHHHHHTT----C---------------CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CG
T ss_pred EeCCHHHHHHHHHHHH----h---------------CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC-----CH
Confidence 3468899988776542 0 012257788888888776652 357788888764 77
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh--h-----hcCC-----------CCccEEEEcCcccCC
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR--K-----SQGI-----------EYADSFNVNVNKWLL 594 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~--~-----ldGi-----------~~aDSIs~d~HK~L~ 594 (891)
++|+++|+++++ .+++. +..|+.. |++ + +|+. -.+|.+..++||+++
T Consensus 158 ~~le~ai~~~tk----lV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg 233 (415)
T 2fq6_A 158 ADIVKHLQPNTK----IVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLV 233 (415)
T ss_dssp GGGGGGCCTTEE----EEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTT
T ss_pred HHHHHhhccCCc----EEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccC
Confidence 788877765321 12211 2234433 444 3 2221 247999999999999
Q ss_pred cccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy852 595 TAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672 (891)
Q Consensus 595 ~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~ 672 (891)
.|-+ .|+++.++. .+. .+... .. ..+. ....+..|..++ +.+.+...+++..+++++
T Consensus 234 ~~g~~~~G~l~~~~~-~~~-~l~~~---~~----------~~G~----~~~~~~a~~~~~--~l~~l~~r~~~~~~n~~~ 292 (415)
T 2fq6_A 234 GHSDAMIGTAVCNAR-CWE-QLREN---AY----------LMGQ----MVDADTAYITSR--GLRTLGVRLRQHHESSLK 292 (415)
T ss_dssp CSSSCCCEEEEECTT-THH-HHHHH---HH----------HTTC----CCCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEeCHH-HHH-HHHHH---HH----------hcCC----CCCHHHHHHHHh--hhhHHHHHHHHHHHHHHH
Confidence 8765 677777654 222 22110 00 0000 011234455444 445667778888889999
Q ss_pred HHHHhccCCCcEEe-CC----------------CceeEEEEEecCC-cchhhhhhHHHHHHHHHhCCcEEEee-------
Q psy852 673 FEGKVRRDPRFEIS-ND----------------VRLGLVCFRLRSE-NNLIADQNNRKLLEDINASGRLHMVP------- 727 (891)
Q Consensus 673 L~~~L~~~~~~eil-~~----------------~~~~iV~Fr~~~~-~~~~~d~ln~~L~~~L~~~G~~~~s~------- 727 (891)
+.+.|++.+.++-+ -+ ...++++|.+++. . ......+++.|...++....+
T Consensus 293 l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~----~~~~~~~l~~l~~~~~a~s~G~~~s~~~ 368 (415)
T 2fq6_A 293 VAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLN----NEELANYLDNFSLFSMAYSWGGYESLIL 368 (415)
T ss_dssp HHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCC----HHHHHHHHTTCSSCEECSCCCSSSCEEE
T ss_pred HHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCC----HHHHHHHHHhCCcCeEeccCCCCceeEE
Confidence 99999887765432 11 1357999999752 0 123455555554323221111
Q ss_pred -------ccc-----c--CCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 728 -------ASQ-----E--QNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 728 -------s~~-----~--g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
+.. . ....+ +|++..+++++|+.+.++|++
T Consensus 369 ~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 369 ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp EECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred ecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 100 1 13567 999999999999999988874
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.5e-05 Score=88.86 Aligned_cols=85 Identities=9% Similarity=0.010 Sum_probs=61.5
Q ss_pred eEEEecCCCChHHHHHHHHcC------------CeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc
Q psy852 143 LMAYCSKEAHSCVEKAAMMAF------------VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS 210 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~------------~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga 210 (891)
-+|+....-|.+...++.+.+ ..+..+|.+ |+++|++.++.. .+.+|+++-.++++|.
T Consensus 169 ~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~-----~~~~vi~ep~~~~~G~ 238 (439)
T 2oat_A 169 KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQDP-----NVAAFMVEPIQGEAGV 238 (439)
T ss_dssp EEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTST-----TEEEEEECSSBTTTTS
T ss_pred eEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCCC-----CEEEEEEECCCCCCCC
Confidence 345555566777666654433 356677653 899999988521 2456666666677887
Q ss_pred cc----CHHHHHHHHHHcCCceeeeccccCC
Q psy852 211 FD----NLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 211 vD----pl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+- ++++|.++|++||+++++|.++.|+
T Consensus 239 ~~~~~~~l~~l~~l~~~~gillI~DEv~~g~ 269 (439)
T 2oat_A 239 VVPDPGYLMGVRELCTRHQVLFIADEIQTGL 269 (439)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 76 8999999999999999999999663
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-05 Score=86.99 Aligned_cols=246 Identities=7% Similarity=-0.026 Sum_probs=144.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CCCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~G~m 541 (891)
+++ +++|+++++..++.+... +.-.|+++.-.|.+...++...|.+++.+|.+ +++.+
T Consensus 104 ~i~--~t~g~~~al~~~~~~l~~-------------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 162 (418)
T 3rq1_A 104 RSI--ATAGGTGGIHHLIHNYTE-------------------PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNF 162 (418)
T ss_dssp EEE--EESHHHHHHHHHHHHHSC-------------------TTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSB
T ss_pred cEE--ECCchHHHHHHHHHHhcC-------------------CCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCc
Confidence 455 688999999888764311 12247778888888888888899999999984 56799
Q ss_pred CHHHHHHHHHhhhhcCCc-cEEEEec----CCccc-----------hh------hh-----hcCC---------------
Q psy852 542 RGATLRQVMQQDETMGYI-PFFVSTT----LGTTS-----------CY------RK-----SQGI--------------- 579 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~i-p~~Vvat----aGTT~-----------c~------~~-----ldGi--------------- 579 (891)
|+++|+++|++....+.. .++++.. .|++. |. ++ +|.+
T Consensus 163 d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~ 242 (418)
T 3rq1_A 163 NHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFF 242 (418)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGG
T ss_pred CHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHH
Confidence 999999999864222222 2333322 35543 44 31 1111
Q ss_pred ---CC--cc---EEEEcCcccCCcc-cccEEEEE--eCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHH
Q psy852 580 ---EY--AD---SFNVNVNKWLLTA-FDSSCLWV--ADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLW 648 (891)
Q Consensus 580 ---~~--aD---SIs~d~HK~L~~P-~g~G~llv--R~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW 648 (891)
.. -| -+..+.||.++.| ..+|+++. ++++... .+.....+... ..+. ....+.++
T Consensus 243 ~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~-----~~~~~~~~ 308 (418)
T 3rq1_A 243 NKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIAD-EFFEVNKSTSR--------ATWS-----NICRPAMR 308 (418)
T ss_dssp GGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHH-HHHHHHHHHHH--------HHTS-----SCCHHHHH
T ss_pred HHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHH-HHHHHHHHHHh--------hccC-----CCchHHHH
Confidence 00 12 3445899988755 56788876 2443222 22110000000 0000 01123333
Q ss_pred HHHHHHHH--------hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 649 FVIRTYGL--------SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 649 ~~L~~lG~--------~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+....+.. +.+.++.++..++++++.+.|++. ++++..+ ..+ .+++... ...++.+.|.+
T Consensus 309 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~---------~~~~~~~~l~~ 377 (418)
T 3rq1_A 309 TMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPY-RGGFFITIPTD---------SANAICEELKK 377 (418)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCC-CSSSEEEEECT---------THHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCC-CceEEEEcCCC---------CHHHHHHHHHh
Confidence 34333322 123344556677788888888876 6766543 333 3333332 24567788888
Q ss_pred CCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 720 SGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 720 ~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.|+.+..+ ...+ +++. .+++++|+++++.|++++.
T Consensus 378 ~gi~v~~g-----~~~iRis~~-~~~~~~i~~~~~~l~~~l~ 413 (418)
T 3rq1_A 378 EHIYVIAL-----ANGIRIAAC-GIPKCQMTGLAEKIYNAMK 413 (418)
T ss_dssp TTEECEEC-----SSEEEEEGG-GSCHHHHTTHHHHHHHHHH
T ss_pred CCEEEecC-----CCCeEEEEe-cCCHHHHHHHHHHHHHHHH
Confidence 99875433 2346 8876 5699999999999998763
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.8e-05 Score=87.32 Aligned_cols=260 Identities=12% Similarity=0.118 Sum_probs=148.7
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCcccccccccc-ceEEEecccchHHHHHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLS-KLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~-~~vI~~S~~aH~Sv~Kaa~l 525 (891)
++++++++.+. .+ +++ +++||+|+|..++.++|.....+ .|...+ +-+|+....-|.+...++.+
T Consensus 122 ~l~~~la~~~g-~~--~v~--~~~sGseA~~~al~~~~~~~~~~---------~g~~~g~~~vi~~~~~yhg~~~~~~~~ 187 (439)
T 2oat_A 122 EYEEYITKLFN-YH--KVL--PMNTGVEAGETACKLARKWGYTV---------KGIQKYKAKIVFAAGNFWGRTLSAISS 187 (439)
T ss_dssp HHHHHHHHHHT-CS--EEE--EESSHHHHHHHHHHHHHHHHHHT---------TCCCTTCCEEEEETTCCCCSSHHHHTT
T ss_pred HHHHHHHHhcC-CC--EEE--EeCCHHHHHHHHHHHHHHHhhhc---------cCCCCCCCeEEEEcCCCCCCCHhHhhc
Confidence 44455555543 12 455 67899999999999988643211 111112 23555556677766666554
Q ss_pred cC------------ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe----cCCccc------------hhhh--
Q psy852 526 AF------------VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST----TLGTTS------------CYRK-- 575 (891)
Q Consensus 526 ~g------------v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva----taGTT~------------c~~~-- 575 (891)
.+ .++..+|.+ |+++|+++|+.+ .+-++++. +.|... |.++
T Consensus 188 ~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~----~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gi 258 (439)
T 2oat_A 188 STDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQDP----NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQV 258 (439)
T ss_dssp CCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTST----TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred CCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCCC----CEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 33 356677753 899999998521 12223322 234322 4331
Q ss_pred ---hc----CC-------------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 576 ---SQ----GI-------------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 576 ---ld----Gi-------------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+| |+ -..|.++ .+|++++. +..|+++.+++ +.+.+.. . .+ ..
T Consensus 259 llI~DEv~~g~g~~g~~~~~~~~~~~~Di~t--~sK~l~~G~~~~G~v~~~~~--~~~~l~~---~-~~---------~~ 321 (439)
T 2oat_A 259 LFIADEIQTGLARTGRWLAVDYENVRPDIVL--LGKALSGGLYPVSAVLCDDD--IMLTIKP---G-EH---------GS 321 (439)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTSSCCEEEEECHH--HHTTSCT---T-SS---------CC
T ss_pred EEEEeccccCCccCCcchhHHHhCCCCcEEE--ecccccCCCCCeEEEEECHH--HHhccCC---C-Cc---------cc
Confidence 11 11 0257664 46998875 56899998754 2222211 0 00 11
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC--CCceeEEEEEecCCcchhhhhhHHH
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN--DVRLGLVCFRLRSENNLIADQNNRK 712 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~--~~~~~iV~Fr~~~~~~~~~d~ln~~ 712 (891)
+.. .-++.......+++.+..+ +..++..+++++|.+.|++. ++.++. +...+++.+.+.+.. +....+
T Consensus 322 t~~-~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~----~~~~~~ 392 (439)
T 2oat_A 322 TYG-GNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETK----DWDAWK 392 (439)
T ss_dssp SST-TCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCS----SCCHHH
T ss_pred CCC-cCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCc----cHHHHH
Confidence 111 1122233444555555443 45667788899999999876 233221 223457777775321 023567
Q ss_pred HHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 713 LLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 713 L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.+.|.++|+++. + .+...+ ++++..+|++||+++++.|++++
T Consensus 393 l~~~l~~~Gv~v~-~---~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 436 (439)
T 2oat_A 393 VCLRLRDNGLLAK-P---THGDIIRFAPPLVIKEDELRESIEIINKTI 436 (439)
T ss_dssp HHHHHHHTTEECC-B---SSSSEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEe-c---CCCCEEEEECccCCCHHHHHHHHHHHHHHH
Confidence 8889988998732 2 234566 88888899999999999998875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-05 Score=87.45 Aligned_cols=78 Identities=13% Similarity=0.065 Sum_probs=65.6
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++. -+|.+....+...|.+++.++.++++.+|+++| +. +.+|+++..+|.+|.+-|.+++.++++..
T Consensus 100 Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l-----~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 167 (335)
T 1uu1_A 100 VFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV-----GE------GDVVFIPNPNNPTGHVFEREEIERILKTG 167 (335)
T ss_dssp EECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC-----CT------TEEEEEESSCTTTCCCCCHHHHHHHHHTT
T ss_pred EEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc-----CC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 7777 889998888876778999999988888999887 11 34666677799999999999999999988
Q ss_pred CCceeeecccc
Q psy852 225 DVWLHVDGAYA 235 (891)
Q Consensus 225 ~~~lHvDaA~G 235 (891)
| ++++|.+|+
T Consensus 168 ~-~li~De~~~ 177 (335)
T 1uu1_A 168 A-FVALDEAYY 177 (335)
T ss_dssp C-EEEEECTTH
T ss_pred C-EEEEECcch
Confidence 8 899999994
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-06 Score=94.31 Aligned_cols=281 Identities=12% Similarity=0.044 Sum_probs=184.4
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa~ 524 (891)
++.+.+++.+...+...++ +++|+++++..++.+.- . +.-.|+++..+|++ ...++.
T Consensus 50 ~~~~~la~~~~~~~~~~v~--~~~sgt~al~~~~~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~ 108 (411)
T 3nnk_A 50 EVMALYRGVFRTENRWTML--VDGTSRAGIEAILVSAI----R---------------PGDKVLVPVFGRFGHLLCEIAR 108 (411)
T ss_dssp HHHHHHHHHHTCCCSEEEE--EESCHHHHHHHHHHHHC----C---------------TTCEEEEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEE--ECCCcHHHHHHHHHHhc----C---------------CCCEEEEecCCchHHHHHHHHH
Confidence 3344556666544432344 56788999988876651 0 12357888888987 777778
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCC---------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGI--------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi--------- 579 (891)
..|.+++.+|.+.++.+|+++|+++|++.. ...++++. ..|+.. |+++ +|++
T Consensus 109 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~ 185 (411)
T 3nnk_A 109 RCRAEVHTIEVPWGEVFTPDQVEDAVKRIR---PRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLE 185 (411)
T ss_dssp HTTCEEEEEECCTTCCCCHHHHHHHHHHHC---CSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCC
T ss_pred HcCCeEEEEecCCCCCCCHHHHHHHHhhCC---CeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccc
Confidence 889999999999999999999999998631 12233332 455544 5442 2321
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc----cCCCccccCCCCC--ccccC--------------Ccc
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV----VDPLYLQHGHEGA--IDYRH--------------WGI 636 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~----~~~~Yl~~~~e~~--~~~~~--------------~ti 636 (891)
..+|.+++++|||+++|.|+|+++++++. .+.+. ..+.|........ ..... ...
T Consensus 186 ~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~--~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 263 (411)
T 3nnk_A 186 TDVWGLDAVSAGMQKCLGGPSGTSPITLSARM--EEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERL 263 (411)
T ss_dssp TTTTTCSEEECCSTTTTCCCSSEEEEEECHHH--HHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCC
T ss_pred hhccCCcEEEecCccccCCCCceEEEEECHHH--HHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccC
Confidence 14799999999999999999999987652 11111 1122221110000 00000 000
Q ss_pred -ccccc-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHH
Q psy852 637 -PLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNR 711 (891)
Q Consensus 637 -~~SRr-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~ 711 (891)
.++.. .....++.+++.+...|+++..++..++++++.+.|++. ++++..++. .++++|+++.. ....
T Consensus 264 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------~~~~ 336 (411)
T 3nnk_A 264 NHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQG------INGD 336 (411)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTT------CCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCC------CCHH
Confidence 11111 223456677787788889999999999999999999986 787765543 57889988521 1356
Q ss_pred HHHHHHHhC-CcEEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 712 KLLEDINAS-GRLHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 712 ~L~~~L~~~-G~~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
++.+.|.++ |+.+..+........+ +++ +..+|++||+++++.|+++..
T Consensus 337 ~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~ 388 (411)
T 3nnk_A 337 QARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLN 388 (411)
T ss_dssp HHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHH
Confidence 788888776 9876554433344566 997 667799999999999998874
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.4e-05 Score=92.31 Aligned_cols=255 Identities=11% Similarity=0.017 Sum_probs=147.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-----CCc-
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-----NSL- 541 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-----G~m- 541 (891)
+++|++.+|..++.+.- .+.-.|++...+|.|+..++.+.|.+++.++++.+ +.+
T Consensus 216 v~nGts~An~~ai~al~-------------------~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~~~i~ 276 (715)
T 3n75_A 216 VTNGTSTANKIVGMYSA-------------------PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIP 276 (715)
T ss_dssp ESSHHHHHHHHHHHHHC-------------------CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCBCCCC
T ss_pred ECcHHHHHHHHHHHHhC-------------------CCCCEEEECCCccHHHHHHHHHcCCEEEEEeccccccccccCcc
Confidence 35566788877766531 12336999999999999999999999999987533 224
Q ss_pred ----CHHHHHHHHHhhhhcCCcc-EEEEec---CCccc--------hhh--------h---------h---cCCC---Cc
Q psy852 542 ----RGATLRQVMQQDETMGYIP-FFVSTT---LGTTS--------CYR--------K---------S---QGIE---YA 582 (891)
Q Consensus 542 ----D~~~Le~aI~~d~~~g~ip-~~Vvat---aGTT~--------c~~--------~---------l---dGi~---~a 582 (891)
|+++|+++|++..... .| ++|+.+ .|... |.. | . .++. .+
T Consensus 277 ~~~~d~e~Le~~l~~~~~~k-~p~~vivt~pn~~G~v~dl~~I~ela~~~~livDEAH~~~~~f~~~~~~~~al~~g~~a 355 (715)
T 3n75_A 277 QSEFQHATIAKRVKETPNAT-WPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVE 355 (715)
T ss_dssp GGGGSHHHHHHHHHHSTTCC-SCSEEEEESSCTTSEEECHHHHHHHCCCSEEEEECTTCTTGGGSGGGTTSSTTSSSCCT
T ss_pred cccCCHHHHHHHHhhCcCcc-CceEEEEECCCCCCccCCHHHHHHHhCcCcEEEccccccccccCCccccccccccCcCC
Confidence 8999999998743211 12 223222 23332 211 1 1 1222 26
Q ss_pred cEE---EEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhH
Q psy852 583 DSF---NVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGL 659 (891)
Q Consensus 583 DSI---s~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~ 659 (891)
|.+ +.++||+|++|-++|++++++.... ..+.....++.+. ++.. .....+=.+++.+-...-
T Consensus 356 D~vii~~~S~hKtL~gltqgs~i~v~~~i~~-~~~~~~~~~~~ST----------Spsy---~~~AsldaA~~~~~~~~g 421 (715)
T 3n75_A 356 GKVIYETQSTHKLLAAFSQASMIHVKGDVNE-ETFNEAYMMHTTT----------SPHY---GIVASTETAAAMMKGNAG 421 (715)
T ss_dssp TCEEEEEECHHHHSSCCTTCEEEEEESCCCH-HHHHHHHHHTSCS----------SCCH---HHHHHHHHHHHHHSHHHH
T ss_pred CEEEEEEecccccccCCCCeeEEEeCchhhH-HHHHHHHHhhcCC----------CchH---HHHHHHHHHHHHHHhhcc
Confidence 776 8999999999999999999876211 1111111111100 0000 000111112222221122
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC------cEEeCCCc-----------------------------eeEEEEEecCCcc-
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPR------FEISNDVR-----------------------------LGLVCFRLRSENN- 703 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~------~eil~~~~-----------------------------~~iV~Fr~~~~~~- 703 (891)
.+..++..+++++|.++|+++++ |+++.+.. ..-+.+..++.+.
T Consensus 422 ~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~ 501 (715)
T 3n75_A 422 KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKD 501 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCC
Confidence 44678889999999999987753 56665431 1223333322110
Q ss_pred ---hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 704 ---LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 704 ---~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+..--...+.+.|.+.|+. ....+.+.+ +.++...|++++++++++|.++..
T Consensus 502 G~~~~~Gi~g~~~~~~L~~~~I~----~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 502 GTMSDFGIPASIVAKYLDEHGIV----VEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp SCBCSSCCCHHHHHHHHHHTTCC----CSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CccccCCCcHHHHHHHHHHCCCE----EEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 00011123566677777876 444445555 778888899999999999998864
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=1.5e-07 Score=104.88 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=69.8
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC-CC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD-DK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
|++..-+|++...++...+.+++.++.+ ++ +.+|+++|++.+++.. +.+|+++..+|.+|.+-| +++|+
T Consensus 116 vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~~~~~~l~~l~ 190 (392)
T 3b1d_A 116 VLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVEND-----VKLYLLCNPHNPGGRVWEREVLEQIG 190 (392)
Confidence 6677778888888776667788888885 33 4599999999887321 235556778899999865 89999
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|+++|+++++|.+|+++.
T Consensus 191 ~~~~~~~~~li~De~~~~~~ 210 (392)
T 3b1d_A 191 HLCQKHHVILVSDEIHQDLT 210 (392)
Confidence 99999999999999996543
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.2e-05 Score=88.73 Aligned_cols=271 Identities=11% Similarity=-0.019 Sum_probs=142.4
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++++++++.+.....=+++ +++||+++|..++.++|... + +.-+|+.....|.+...++.+
T Consensus 89 ~~l~~~la~~~~~~~~~~v~--~~~ggsea~~~al~~~~~~~-~---------------~~~vi~~~~~yhg~~~~~~~~ 150 (439)
T 3dxv_A 89 VTLAERLLASFPGEGTHKIW--FGHSGSDANEAAYRAIVKAT-G---------------RSGVIAFAGAYHGCTVGSMAF 150 (439)
T ss_dssp HHHHHHHHHTTTCTTTEEEE--EESSHHHHHHHHHHHHHHHH-S---------------CCEEEEETTCCCCSSHHHHCC
T ss_pred HHHHHHHHHhCCCCCCCEEE--EeCCHHHHHHHHHHHHHHHh-C---------------CCEEEEECCCCCCCcHHHHhh
Confidence 45566666665321101556 78899999999999887532 1 223566667777766666544
Q ss_pred cCce--------------EEEecCCCCCCc-----CHHHHHHHHHhhhhcCCccEEEE-ec---CCccc-----------
Q psy852 526 AFVR--------------LKILEPDDKNSL-----RGATLRQVMQQDETMGYIPFFVS-TT---LGTTS----------- 571 (891)
Q Consensus 526 ~gv~--------------v~~Vp~d~~G~m-----D~~~Le~aI~~d~~~g~ip~~Vv-at---aGTT~----------- 571 (891)
.+.. +..+|.+..+.- |+++|+++|++... ..+.++++ .. .|...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~ 229 (439)
T 3dxv_A 151 SGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPA-GSIGAAFIEPIQSDGGLIVPPDGFLRKFAD 229 (439)
T ss_dssp -------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCT-TCEEEEEECSSBSTTTSBCCCTTHHHHHHH
T ss_pred cCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCC-CCEEEEEEccccCCCCCccCCHHHHHHHHH
Confidence 3321 234555433333 79999999952111 12222332 22 23322
Q ss_pred -hhhh-----hc----CC-------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCC
Q psy852 572 -CYRK-----SQ----GI-------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGA 628 (891)
Q Consensus 572 -c~~~-----ld----Gi-------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~ 628 (891)
|.+| +| |+ ...|.+++ .|.+++-+.+|+++.+.+ +.+.+... .
T Consensus 230 l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~--sK~~~~G~riG~~~~~~~--~~~~~~~~----~------ 295 (439)
T 3dxv_A 230 ICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVL--GKGLGGGLPLSAVIAPAE--ILDCASAF----A------ 295 (439)
T ss_dssp HHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEE--CGGGGTTSCCEEEEEEHH--HHTSCSSS----S------
T ss_pred HHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEE--cchhcCCcceEEEEECHH--HHhhhcCC----C------
Confidence 3331 11 11 11466655 588876556788887653 21111100 0
Q ss_pred ccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----CCCcEEeCCCceeEEEEEecCCc--
Q psy852 629 IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR----DPRFEISNDVRLGLVCFRLRSEN-- 702 (891)
Q Consensus 629 ~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~----~~~~eil~~~~~~iV~Fr~~~~~-- 702 (891)
...+. ...+.+.+++..+....-.+.+++..++.+++.+.|++ .+.+... ++..+++.|.+.+..
T Consensus 296 ---~~~t~-----~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 366 (439)
T 3dxv_A 296 ---MQTLH-----GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMELVCDRQS 366 (439)
T ss_dssp ---CCTTT-----TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTT
T ss_pred ---cCCCc-----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccc
Confidence 00111 12233333333332111133455556666666666654 3444332 223456666663210
Q ss_pred chhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 703 NLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 703 ~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
...-......+.+.|.++|+++..+. .....+ ++++..+|+++++++++.|++++.
T Consensus 367 ~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 423 (439)
T 3dxv_A 367 REPARAETAKLIYRAYQLGLVVYYVG--MNGNVLEFTPPLTITETDIHKALDLLDRAFS 423 (439)
T ss_dssp TEECHHHHHHHHHHHHHHTEECEEES--TTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCcEEeecC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 00013345678888888898754332 123556 888888899999999999998874
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.8e-05 Score=83.91 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=54.7
Q ss_pred eEEEEecCCC---CcccHHHHHHHHHhhhhcCCcceEEEeecccC-ccccccC----HHHHHHHHHHcCCceeeeccccC
Q psy852 165 RLKILEPDDK---NSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SCCSFDN----LAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 165 ~v~~V~~d~~---g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt-~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG 236 (891)
.+..++.+.. +..|+++|++.+++.. ...+.+|+++-.++ .+|.+-+ +++|+++|++||++|++|-+|.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~ 236 (430)
T 3i4j_A 159 AWPKLPKPDPARNGAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSG 236 (430)
T ss_dssp GSCEECCCCTTSCHHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred CceEcCCCcccchhhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence 4455665544 5678999999997521 02246777777777 8898888 99999999999999999999966
Q ss_pred Cc
Q psy852 237 SS 238 (891)
Q Consensus 237 ~~ 238 (891)
+.
T Consensus 237 ~~ 238 (430)
T 3i4j_A 237 MG 238 (430)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-05 Score=87.99 Aligned_cols=221 Identities=10% Similarity=-0.026 Sum_probs=128.4
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe----cCCccc-----------h
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST----TLGTTS-----------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva----taGTT~-----------c 572 (891)
.|++..-+|.....++...|.+++.+|.+++| +|+++|++++++. ....++++. ..|++. |
T Consensus 133 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~---~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~ 208 (422)
T 3d6k_A 133 KWLCPVPGYDRHFTITEHFGFEMINVPMTDEG-PDMGVVRELVKDP---QVKGMWTVPVFGNPTGVTFSEQTCRELAEMS 208 (422)
T ss_dssp EEEEEESCCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHTST---TEEEEEECCSSCTTTCCCCCHHHHHHHHHCC
T ss_pred EEEEeCCccHHHHHHHHHcCCEEEecCCCCCC-CCHHHHHHHHhcC---CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 47777788888888888889999999998777 9999999999642 111222222 245543 4
Q ss_pred h-hh-----hcCC-------------------------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCc
Q psy852 573 Y-RK-----SQGI-------------------------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLY 620 (891)
Q Consensus 573 ~-~~-----ldGi-------------------------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Y 620 (891)
. ++ .|.+ ...+-+..+++|+ +.| ..+|+++...+ +.+.+.....+
T Consensus 209 ~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~--l~~~l~~~~~~ 285 (422)
T 3d6k_A 209 TAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSKE--NIEWYASHANV 285 (422)
T ss_dssp CSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCHH--HHHHHHHHHHH
T ss_pred hhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCHH--HHHHHHHHHHh
Confidence 4 31 1110 0123446678998 555 55898887632 22222110000
Q ss_pred cccCCCCCccccCCcccccccccchHHHHHHHHHHH-hh----HHHHHHHHHHHHHHHHHHhcc----CCCcEEeCCCce
Q psy852 621 LQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SG----LQKYIRRHCELAKLFEGKVRR----DPRFEISNDVRL 691 (891)
Q Consensus 621 l~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G----~~~~i~~~~~lA~~L~~~L~~----~~~~eil~~~~~ 691 (891)
..++ ...+.++++...+.. .. +++..+...+..+++.+.|++ .+++++..+...
T Consensus 286 -----------~~~~------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g 348 (422)
T 3d6k_A 286 -----------RGIG------PNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGG 348 (422)
T ss_dssp -----------HCSC------CCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBS
T ss_pred -----------hcCC------CCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcc
Confidence 0001 112344444444433 22 233333334455555555543 344666555455
Q ss_pred eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-c-----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 692 GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS-Q-----EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 692 ~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~-~-----~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+.+++++++. ..+.+.+.|.+.|+.+..+.. . .+...+ ++++. +++++++++++.|+++..
T Consensus 349 ~~~~~~~~~~-------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~ 416 (422)
T 3d6k_A 349 YFISVDVVPG-------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVL 416 (422)
T ss_dssp SCEEEEESTT-------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCC-------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHH
Confidence 6778888532 245677888889987544222 2 134566 88887 899999999999998864
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.5e-05 Score=83.78 Aligned_cols=283 Identities=11% Similarity=0.031 Sum_probs=148.9
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++++.+++.+...+. +++ +++||+|++..++.+++.....+ |...++-+|+.+..-|.+...++.+
T Consensus 96 ~~l~~~la~~~~~~~~-~v~--~~~ggsea~~~al~~~~~~~~~~----------g~~~~~~vi~~~~~yhg~~~~~~~~ 162 (449)
T 3a8u_X 96 FQLAEKITDLTPGNLN-HVF--FTDSGSECALTAVKMVRAYWRLK----------GQATKTKMIGRARGYHGVNIAGTSL 162 (449)
T ss_dssp HHHHHHHHTTSSTTEE-EEE--EESSHHHHHHHHHHHHHHHHHHT----------TCTTCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHHhCCCCCC-EEE--EcCcHHHHHHHHHHHHHHHHHhc----------CCCCCCEEEEECCCcCCCChhhhhc
Confidence 3555666666542222 455 78999999999999887643211 1111234566677777666555544
Q ss_pred cC------------ceEEEecCCCCC-----CcC--------HHHHHHHHHhhhhcCCccEEEEe----cCCccc-----
Q psy852 526 AF------------VRLKILEPDDKN-----SLR--------GATLRQVMQQDETMGYIPFFVST----TLGTTS----- 571 (891)
Q Consensus 526 ~g------------v~v~~Vp~d~~G-----~mD--------~~~Le~aI~~d~~~g~ip~~Vva----taGTT~----- 571 (891)
.+ ..++.+|++... .+| +++|+++|++... ..+-++++. ..|...
T Consensus 163 ~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~-~~~~~vi~~p~~~~tG~~~~~~~~ 241 (449)
T 3a8u_X 163 GGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDA-SNIAAVFVEPLAGSAGVLVPPEGY 241 (449)
T ss_dssp CCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCG-GGEEEEEECSSBTTTTCBCCCTTH
T ss_pred cCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCC-CCEEEEEEcCccCCCCCccCCHHH
Confidence 32 135556553221 256 9999999975310 112223322 235322
Q ss_pred -------hhhh-----hc----CC-------------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCcc
Q psy852 572 -------CYRK-----SQ----GI-------------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYL 621 (891)
Q Consensus 572 -------c~~~-----ld----Gi-------------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl 621 (891)
|.++ +| |+ -..|.+++ .|++++- +.+|+++++++ +.+.+.....
T Consensus 242 l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~--sK~l~~G~~~~G~~~~~~~--~~~~l~~~~~-- 315 (449)
T 3a8u_X 242 LKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCI--AKQVTNGAIPMGAVIASTE--IYQTFMNQPT-- 315 (449)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSSCCEEEEEEHH--HHHHHHTCSS--
T ss_pred HHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEEEE--cccccCCCCceEEEEECHH--HHHHhhccCc--
Confidence 3331 11 11 12477755 4988742 34899988753 2233321100
Q ss_pred ccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC--CCceeEEEEEec
Q psy852 622 QHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN--DVRLGLVCFRLR 699 (891)
Q Consensus 622 ~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~--~~~~~iV~Fr~~ 699 (891)
...+... ....+... -++.......+++.+..+ +..++..++.+++.+.|++++.+.++. ++..+++++.+.
T Consensus 316 -~~~~~~~-~~~~t~~~-~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~ 389 (449)
T 3a8u_X 316 -PEYAVEF-PHGYTYSA-HPVACAAGLAALCLLQKE---NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIA 389 (449)
T ss_dssp -CTTSCSS-CCCCTTTT-CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEEC
T ss_pred -ccccccc-cccCCCcc-cHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEe
Confidence 0000000 00011111 111122223344433333 356667778888888887754332221 223467888885
Q ss_pred CCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 700 SENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 700 ~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+..... ......+.+.|.++|+++..+ + ..+ ++++..+|++||+++++.|++++.
T Consensus 390 ~~~~~~-~~~~~~~~~~l~~~Gv~v~~~----g-~~iRis~~~~~t~~~i~~~l~~l~~~l~ 445 (449)
T 3a8u_X 390 PRDGDA-IVRPFEAGMALWKAGFYVRFG----G-DTLQFGPTFNSKPQDLDRLFDAVGEVLN 445 (449)
T ss_dssp CBTTBS-SHHHHHHHHHHHHHTEECEEE----T-TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCcccc-cccHHHHHHHHHHCCcEEecC----C-CEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 431000 001235888888889874433 2 456 888888999999999999998763
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-05 Score=89.93 Aligned_cols=215 Identities=10% Similarity=0.074 Sum_probs=124.3
Q ss_pred EEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c 572 (891)
.|+++...|.+..... ...|++++.+|.+ |+++|+++|++.+ ..+++. +..|... |
T Consensus 107 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~~t----~~v~~~~p~nptG~~~~l~~i~~la 177 (403)
T 3cog_A 107 QIICMDDVYGGTNRYFRQVASEFGLKISFVDCS-----KIKLLEAAITPET----KLVWIETPTNPTQKVIDIEGCAHIV 177 (403)
T ss_dssp EEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT-----SHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCcCC----eEEEEECCCCCCCeeeCHHHHHHHH
Confidence 5788888888765543 3468899999886 8999998887532 122222 2234333 3
Q ss_pred hhh------hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccC
Q psy852 573 YRK------SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 633 (891)
Q Consensus 573 ~~~------ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~ 633 (891)
+++ +|. + -.+|.+..++||++++|.+ +|+++.+++..... +.. +.. .
T Consensus 178 ~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~-l~~---~~~----------~ 243 (403)
T 3cog_A 178 HKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNR-LRF---LQN----------S 243 (403)
T ss_dssp TSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHH-HHH---HHH----------H
T ss_pred HHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHH-HHH---HHH----------h
Confidence 321 111 1 2479999999999999987 48888876543221 110 000 0
Q ss_pred CcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC--------------CcEEeCC---CceeEEEE
Q psy852 634 WGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP--------------RFEISND---VRLGLVCF 696 (891)
Q Consensus 634 ~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~--------------~~eil~~---~~~~iV~F 696 (891)
++. ....+.+|+.++. .+.+...+++..++++.+.+.|++.+ ++++..+ ...++++|
T Consensus 244 ~g~----~~~~~~~~~~~~~--l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~ 317 (403)
T 3cog_A 244 LGA----VPSPIDCYLCNRG--LKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTF 317 (403)
T ss_dssp HCC----CCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEE
T ss_pred cCC----CCCHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEE
Confidence 000 0123455665543 34455566666666666666665543 3333221 12679999
Q ss_pred EecCCcchhhhhhHHHHHHHHHhCCcEEEe---e---------c--c-c---------cC--CeEE-EEecCCCCHHHHH
Q psy852 697 RLRSENNLIADQNNRKLLEDINASGRLHMV---P---------A--S-Q---------EQ--NDEV-FELQERKRKDDLA 749 (891)
Q Consensus 697 r~~~~~~~~~d~ln~~L~~~L~~~G~~~~s---~---------s--~-~---------~g--~~~l-~sv~~~tT~edId 749 (891)
.+++. . +.+...|.+.|++... + . . . .+ ...+ +|++..+++++|+
T Consensus 318 ~l~~~-----~---~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~ 389 (403)
T 3cog_A 318 YIKGT-----L---QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLE 389 (403)
T ss_dssp EESSC-----H---HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHH
T ss_pred EecCC-----H---HHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHH
Confidence 98642 1 3344455556664321 1 0 0 0 02 4567 9999988999999
Q ss_pred HHHHHHHHHH
Q psy852 750 YKRSFFVRML 759 (891)
Q Consensus 750 ~li~~L~ei~ 759 (891)
.+.++|+++.
T Consensus 390 ~l~~al~~~~ 399 (403)
T 3cog_A 390 DLDQALKAAH 399 (403)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9988887653
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8e-06 Score=90.84 Aligned_cols=247 Identities=11% Similarity=0.002 Sum_probs=147.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC------
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD------ 536 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d------ 536 (891)
+|+ +++|+++++..++.+... +.-.|++..-.|......+...|.+++.+|.+
T Consensus 87 ~i~--~~~g~~~a~~~~~~~~~~-------------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g 145 (410)
T 3e2y_A 87 EIL--VAVGAYGSLFNSIQGLVD-------------------PGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDG 145 (410)
T ss_dssp SEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCS
T ss_pred CEE--EeCCcHHHHHHHHHHhcC-------------------CCCEEEEeCCCchhhHHHHHHcCCEEEEEecccccccc
Confidence 555 678999999888766411 11247777788888888888889999998876
Q ss_pred -----CCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------C-----
Q psy852 537 -----DKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------G----- 578 (891)
Q Consensus 537 -----~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------G----- 578 (891)
.++.+|+++|++++++.+ ..++++ +..|+.. |.++ +| |
T Consensus 146 ~~~~~~~~~~d~~~l~~~~~~~~----~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 221 (410)
T 3e2y_A 146 MKWTSSDWTFDPRELESKFSSKT----KAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVK 221 (410)
T ss_dssp SCCBGGGEECCHHHHHTTCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC
T ss_pred ccccccCCcCCHHHHHhhcCCCc----eEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCC
Confidence 456799999999886431 122332 2345542 3331 11 1
Q ss_pred ---C---CCccEEEEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHH
Q psy852 579 ---I---EYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVI 651 (891)
Q Consensus 579 ---i---~~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L 651 (891)
+ ...+-+..+.+|.++ .-..+|+++.+++ +.+.+.. +... ..++ ...+.+++..
T Consensus 222 ~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~--~~~~~~~---~~~~--------~~~~------~~~~~~~a~~ 282 (410)
T 3e2y_A 222 IATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAH--LIKHLQT---VQQN--------SFYT------CATPLQAALA 282 (410)
T ss_dssp GGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHH--HHHHHHH---HHHT--------TTCC------CCHHHHHHHH
T ss_pred HHHcCCccCeEEEEecchhhcCCCCceEEEEEECHH--HHHHHHH---HHHh--------hccC------CChHHHHHHH
Confidence 0 012255667899997 4467888876543 2221110 0000 0011 1122333333
Q ss_pred HHHH---------HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhh------hhHHHHHHH
Q psy852 652 RTYG---------LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIAD------QNNRKLLED 716 (891)
Q Consensus 652 ~~lG---------~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d------~ln~~L~~~ 716 (891)
..+. .+.+++..++..+++++|.+.|++. ++++..+.....+++.+..... .++ ....++...
T Consensus 283 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 360 (410)
T 3e2y_A 283 EAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGA-DLSDMNSDEPYDYKFVKW 360 (410)
T ss_dssp HHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGCC-CCTTCCSSCCHHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhhc-ccccccccccCHHHHHHH
Confidence 3332 4456777788889999999999987 7887766555667777653210 001 112356665
Q ss_pred H-HhCCcEEEeecccc-------CCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 717 I-NASGRLHMVPASQE-------QNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 717 L-~~~G~~~~s~s~~~-------g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
| .+.|+++..+.... +...+ +++.. ++++|+++++.|++
T Consensus 361 ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 361 MTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred HHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 5 56788766555442 24566 88654 99999999988864
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.8e-05 Score=88.66 Aligned_cols=209 Identities=11% Similarity=0.105 Sum_probs=124.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH----HHHHcCceEEEecCCCCCCcCHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K----aa~l~gv~v~~Vp~d~~G~mD~~ 544 (891)
.++|++++..++.+. . .+.-.|+++...|.+... .+...|++++.+|.+ |++
T Consensus 103 ~~sG~~Ai~~al~al----~---------------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-----d~~ 158 (430)
T 3ri6_A 103 LGSGMAAISTAILTL----A---------------RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-----DSL 158 (430)
T ss_dssp ESCHHHHHHHHHHHH----C---------------CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-----CHH
T ss_pred ECCHHHHHHHHHHHH----h---------------CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHH
Confidence 456688888777654 1 022357888888887777 445678899999886 899
Q ss_pred HHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc-
Q psy852 545 TLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA- 596 (891)
Q Consensus 545 ~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P- 596 (891)
+|+++|++.++ .+++.. ..|... |+++ +|.. .++|.+..++||++++|
T Consensus 159 ~l~~ai~~~t~----~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g 234 (430)
T 3ri6_A 159 AVEHACDETTK----LLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGG 234 (430)
T ss_dssp HHHHHCCTTEE----EEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTE
T ss_pred HHHHhhCCCCe----EEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCC
Confidence 99999875321 222222 234332 3331 2221 24799999999999987
Q ss_pred -cccEEEEEeCCccchh-----hh---ccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHH
Q psy852 597 -FDSSCLWVADRYKLTS-----AL---VVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHC 667 (891)
Q Consensus 597 -~g~G~llvR~~~~L~~-----~l---~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~ 667 (891)
.-.|+++.+....... .+ .....|+... ...+....+-....+..|..++ |.+.+..++++..
T Consensus 235 ~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~------~~~~~~~~g~~~~~~~a~l~l~--~l~~l~~r~~~~~ 306 (430)
T 3ri6_A 235 TSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKA------RKEVFQNLGPSLSPHNAYLQSL--GLETMALRIERSC 306 (430)
T ss_dssp EECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHH------HHTHHHHHCCCCCHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CceEEEEEECChHHhhhccchhhhhhhhchhhHHHHH------HHHHHHhcCCCCCHHHHHHHHh--hhhhHHHHHHHHH
Confidence 3456665554422210 00 0000000000 0000000111123445565544 7778888899999
Q ss_pred HHHHHHHHHhccCCCcEEeCCCc----------------ee-EEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 668 ELAKLFEGKVRRDPRFEISNDVR----------------LG-LVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 668 ~lA~~L~~~L~~~~~~eil~~~~----------------~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
++++++.+.|++.|.++-+..|. -+ +++|.+++ .....++++.|..
T Consensus 307 ~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~------~~~~~~~~~~l~~ 369 (430)
T 3ri6_A 307 QNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES------KEASYRFMDALKL 369 (430)
T ss_dssp HHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS------HHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC------HHHHHHHHHhCCc
Confidence 99999999999999988654443 34 99999963 2345666666654
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=89.18 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=59.8
Q ss_pred EEecCCCChHHHHHHHHcC------------CeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc
Q psy852 145 AYCSKEAHSCVEKAAMMAF------------VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD 212 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~------------~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD 212 (891)
|++..-+|.++..++...+ .+++.++++.++.++.+ |++ . ..+.+|+++..+|.+|.+-
T Consensus 145 Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~----~----~~~~~v~l~~p~NPtG~~~ 215 (432)
T 3ei9_A 145 IAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPD-LST----V----GRTDIIFFCSPNNPTGAAA 215 (432)
T ss_dssp EEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCC-GGG----C----CCCSEEEEESSCTTTCCCC
T ss_pred EEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCC-hhh----C----CCCCEEEEeCCCCCCCCCC
Confidence 7788889999988886533 36888998765433322 221 1 1134566667899999885
Q ss_pred C---HHHHHHHHHHcCCceeeeccccCC
Q psy852 213 N---LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 213 p---l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+ +.+|+++|+++|+++++|.||+++
T Consensus 216 ~~~~l~~l~~la~~~~~~li~Dea~~~~ 243 (432)
T 3ei9_A 216 TREQLTQLVEFAKKNGSIIVYDSAYAMY 243 (432)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred CHHHHHHHHHHHHHcCcEEEEccchHhh
Confidence 4 667777899999999999999654
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.7e-06 Score=93.56 Aligned_cols=252 Identities=8% Similarity=0.005 Sum_probs=149.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-----
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD----- 537 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~----- 537 (891)
+|+ +++|+++++..++.+... +.-.|++..-.|.+...++...|.+++.+|.++
T Consensus 120 ~v~--~t~G~~~al~~~~~~l~~-------------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 178 (447)
T 3b46_A 120 NVT--VTTGANEGILSCLMGLLN-------------------AGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELD 178 (447)
T ss_dssp GEE--EESHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGG
T ss_pred hEE--EeCCHHHHHHHHHHHHcC-------------------CCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccc
Confidence 565 788999999988776421 112477777788888888888899999998754
Q ss_pred -------CCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh--------------hcC----
Q psy852 538 -------KNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK--------------SQG---- 578 (891)
Q Consensus 538 -------~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~--------------ldG---- 578 (891)
++.+|+++|+++|++.+ ..++++. ..|.+. |.++ .+|
T Consensus 179 ~~~~~~~~~~~d~~~l~~~l~~~~----~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~ 254 (447)
T 3b46_A 179 QRNTRGEEWTIDFEQFEKAITSKT----KAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTR 254 (447)
T ss_dssp TSCBCSTTSEECHHHHHTTCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC
T ss_pred cccccccCcccCHHHHHHhhccCC----eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcC
Confidence 46899999999886421 1233332 245542 3331 111
Q ss_pred ---C----CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHH
Q psy852 579 ---I----EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV 650 (891)
Q Consensus 579 ---i----~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~ 650 (891)
+ ...|-+..++||+++.| ..+|+++.++++.+.. +.....+ ..++. + ......+..+
T Consensus 255 ~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~-l~~~~~~-----------~~~~~--~-~~~~~a~~~a 319 (447)
T 3b46_A 255 IATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSY-AAKAHTR-----------ICFAS--P-SPLQEACANS 319 (447)
T ss_dssp GGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHH-HHHHHHH-----------HTSSC--C-HHHHHHHHHH
T ss_pred HHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHH-HHHHHhh-----------ccCCC--C-hHHHHHHHHH
Confidence 1 13577788999998744 4589988844433322 1100000 00111 1 0111122223
Q ss_pred HHHHH-HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc-chhh--------hhhHHHHHHHHH-h
Q psy852 651 IRTYG-LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN-NLIA--------DQNNRKLLEDIN-A 719 (891)
Q Consensus 651 L~~lG-~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~-~~~~--------d~ln~~L~~~L~-~ 719 (891)
|+... ...+++..++..+++++|.+.|++. ++++..+.....+++++++.. +... .....++.+.|. +
T Consensus 320 L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
T 3b46_A 320 INDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINE 398 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHH
T ss_pred HhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHh
Confidence 33222 2346667778888999999999886 677765544556777775320 0000 123457888776 5
Q ss_pred CCcEEEeecccc-------CCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 720 SGRLHMVPASQE-------QNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 720 ~G~~~~s~s~~~-------g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
.|+++..+.... +...+ +++.. ++++|+++++.|++
T Consensus 399 ~gV~v~pg~~f~~~~~~~~~~~~iRls~~~--~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 399 LGVVAIPPTEFYIKEHEKAAENLLRFAVCK--DDAYLENAVERLKL 442 (447)
T ss_dssp TCEECBCGGGGSCGGGGGGGTTEEEEECCS--CHHHHHHHHHHGGG
T ss_pred CCEEEECchHhCCCCccCCCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence 788754443221 24556 88763 79999999988865
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0001 Score=83.53 Aligned_cols=93 Identities=12% Similarity=-0.011 Sum_probs=64.5
Q ss_pred eEEEecCCCChHHHHHHHHcC------------CeEEEEecCCCCc-----cc--------HHHHHHHHHhhhhcCCcce
Q psy852 143 LMAYCSKEAHSCVEKAAMMAF------------VRLKILEPDDKNS-----LR--------GATLRQVMQQDETMGYIPF 197 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~------------~~v~~V~~d~~g~-----id--------~~~L~~~l~~~~~~g~~p~ 197 (891)
-+|+.+..-|.+...++.+.+ ..+..|+++...+ +| +++|++.|++.. ...+.
T Consensus 144 ~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~ 221 (449)
T 3a8u_X 144 KMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIA 221 (449)
T ss_dssp EEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEE
T ss_pred EEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEE
Confidence 345556777876665554432 2456666543211 46 999999997521 01245
Q ss_pred EEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 198 FVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 198 ~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++-.++.+|.+-| +++|+++|++||++|++|.++.|+
T Consensus 222 ~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~ 265 (449)
T 3a8u_X 222 AVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGF 265 (449)
T ss_dssp EEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred EEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Confidence 7777766677999888 999999999999999999999654
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=98.16 E-value=8e-05 Score=84.47 Aligned_cols=84 Identities=10% Similarity=0.059 Sum_probs=51.8
Q ss_pred EEEecCCCChHHHHHHHHcC------------CeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 144 MAYCSKEAHSCVEKAAMMAF------------VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~------------~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
+|+....-|.+...++.+.+ ..+..+|.+ |+++|++.++.. .+.+|+++-.++.+|.+
T Consensus 159 vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~-----~~~~vi~ep~~~~~G~~ 228 (433)
T 1z7d_A 159 IVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDP-----NVCAFIVEPIQGEAGVI 228 (433)
T ss_dssp EEEETTC--------------------------CEEEECTT-----CHHHHHHHHTST-----TEEEEEECSSBSTTTSB
T ss_pred EEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCC-----CEEEEEEECCCCCCCcc
Confidence 44454556766655544322 245556543 899999998521 14566776666678876
Q ss_pred c----CHHHHHHHHHHcCCceeeeccccCC
Q psy852 212 D----NLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 212 D----pl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
- ++++|.++|++||++|++|.++.|+
T Consensus 229 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 258 (433)
T 1z7d_A 229 VPSDNYLQGVYDICKKYNVLFVADEVQTGL 258 (433)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCccCC
Confidence 5 8999999999999999999999764
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-05 Score=89.13 Aligned_cols=205 Identities=11% Similarity=0.074 Sum_probs=124.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|++++..++.+.. .+.-.|+++...|.+....+. ..|++++.+|.+ |+
T Consensus 101 ~~~sG~~Ai~~al~~l~-------------------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~ 156 (414)
T 3ndn_A 101 ATASGMAAVFTSLGALL-------------------GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-----DL 156 (414)
T ss_dssp EESSHHHHHHHHHHTTC-------------------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----CH
T ss_pred EECCHHHHHHHHHHHHh-------------------CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-----CH
Confidence 56778999877765531 112347778888887766664 378899999886 89
Q ss_pred HHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.+ ..+++.. ..|... |.++ +|. + .++|.+..++||+++.+
T Consensus 157 ~~l~~ai~~~t----~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~ 232 (414)
T 3ndn_A 157 SQWERALSVPT----QAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQ 232 (414)
T ss_dssp HHHHHHTSSCC----SEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCS
T ss_pred HHHHHhcCCCC----eEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCC
Confidence 99999987532 2233322 234433 4331 222 1 24799999999999876
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-. .|+++.+++. +.+.+...... + +-....+..|..++ +.+.+...+++..++++++.
T Consensus 233 G~~~~G~vv~~~~~-~~~~l~~~~~~-------------~----g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~ 292 (414)
T 3ndn_A 233 GRVLGGAILGDREY-IDGPVQKLMRH-------------T----GPAMSAFNAWVLLK--GLETLAIRVQHSNASAQRIA 292 (414)
T ss_dssp SCCCCEEEEECHHH-HTTHHHHHHHH-------------H----CCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEECHHH-HHHHHHHHHHH-------------c----CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 43 6777776542 22111100000 0 11123345565554 66778888999999999999
Q ss_pred HHhccCCCcEEeCCCc-----------------eeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 675 GKVRRDPRFEISNDVR-----------------LGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 675 ~~L~~~~~~eil~~~~-----------------~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
+.|++.|.++.+..|. -++++|.+++... .....+.++++.|...+
T Consensus 293 ~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~-~~~~~~~~~~~~l~~~~ 355 (414)
T 3ndn_A 293 EFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED-VAKQRAFEVLDKMRLID 355 (414)
T ss_dssp HHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG-GHHHHHHHHHHHCSSSE
T ss_pred HHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc-ccHHHHHHHHHhCccce
Confidence 9999988876543222 3689999964200 00124556777776544
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=9.1e-05 Score=80.66 Aligned_cols=269 Identities=13% Similarity=0.111 Sum_probs=179.2
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH-
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM- 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l- 525 (891)
++.+.+++.+...+. +++ +++|+++++..++.+......+ +.-.|+++..+|++...++.+
T Consensus 47 ~~~~~la~~~~~~~~-~i~--~~~g~~~a~~~~~~~~~~~~~~---------------~gd~vi~~~~~~~~~~~~~~~~ 108 (382)
T 4hvk_A 47 EAREKVAKLVNGGGG-TVV--FTSGATEANNLAIIGYAMRNAR---------------KGKHILVSAVEHMSVINPAKFL 108 (382)
T ss_dssp HHHHHHHHHTTCTTE-EEE--EESSHHHHHHHHHHHHHHHHGG---------------GCCEEEEETTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcC-eEE--EECCchHHHHHHHHHhhhhhcC---------------CCCEEEECCCCcHHHHHHHHHH
Confidence 344466666655333 466 6889999999988776542211 223689999999999888764
Q ss_pred --cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec-----CCccc--------hhhh----hcCC-------
Q psy852 526 --AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT-----LGTTS--------CYRK----SQGI------- 579 (891)
Q Consensus 526 --~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat-----aGTT~--------c~~~----ldGi------- 579 (891)
.|++++.+|+++++.+|+++|+++|++.+ .+|+.+ .|+.. |+++ +|++
T Consensus 109 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~~~~i~~l~~~~~~li~D~a~~~~~~~ 182 (382)
T 4hvk_A 109 QKQGFEVEYIPVGKYGEVDVSFIDQKLRDDT------ILVSVQHANNEIGTIQPVEEISEVLAGKAALHIDATASVGQIE 182 (382)
T ss_dssp HHTTCEEEEECBCTTSCBCHHHHHHHCCTTE------EEEECCSBCTTTCBBCCHHHHHHHHSSSSEEEEECTTTBTTBC
T ss_pred HhcCCEEEEeccCCCCCcCHHHHHHHhccCc------eEEEEECCCCCceeeCCHHHHHHHHHHcCEEEEEhHHhcCCCC
Confidence 58899999999999999999999997532 233222 34443 3332 3331
Q ss_pred -----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHH
Q psy852 580 -----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRT 653 (891)
Q Consensus 580 -----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~ 653 (891)
..+|.+++++||++ +|.|+|+++++++..+.+.+ ...... ..... ++-. .....+..+++
T Consensus 183 ~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~~~~------~~~~~~--~~~~~----~~~~~~~~~~~~~al~- 248 (382)
T 4hvk_A 183 VDVEKIGADMLTISSNDIY-GPKGVGALWIRKEAKLQPVI------LGGGQE--NGLRS----GSENVPSIVGFGKAAE- 248 (382)
T ss_dssp CCHHHHTCSEEEEESGGGT-SCTTCEEEEEETTCCCCCSS------CSSCTG--GGTSC----SCCCHHHHHHHHHHHH-
T ss_pred CCchhcCCCEEEEeHHHhc-CCCceEEEEEcCccCcCccc------ccCCCc--Ccccc----CCcCHHHHHHHHHHHH-
Confidence 13699999999975 58899999999875332211 100000 00000 0101 11223333444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
+..+++++..++..++++++.+.|++++++++..++. .++++|++.+. ....+.+.|.+.|+.+..+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g~~~ 321 (382)
T 4hvk_A 249 ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------EGESIVLSLDMAGIQASTGSAC 321 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-------CHHHHHHHHHHTTCBCBCC---
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-------CHHHHHHHHHHCCEEEeeCCcc
Confidence 3346888999999999999999999999999876543 36899998643 3567888898899875433211
Q ss_pred cC-------------------CeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 EQ-------------------NDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 ~g-------------------~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.. ...+ ++++..+|++|++++++.|+++..
T Consensus 322 ~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~ 371 (382)
T 4hvk_A 322 SSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE 371 (382)
T ss_dssp -----CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 10 3456 999999999999999999998874
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=92.73 Aligned_cols=213 Identities=12% Similarity=0.045 Sum_probs=117.9
Q ss_pred EEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc--------h
Q psy852 508 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c 572 (891)
.|+++...|.+...++ ...|++++.+|.+ |+++|+++|++.+ ..++++.. .|... |
T Consensus 173 ~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~~t----k~v~l~~p~NptG~v~~l~~i~~la 243 (464)
T 1ibj_A 173 EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQT----KLVWLESPTNPRQQISDIRKISEMA 243 (464)
T ss_dssp EEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCCSSE----EEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhccCc----eEEEEeCCCCCCCEeecHHHHHHHH
Confidence 4777778888876643 4568899999875 8999999986432 12222221 34433 4
Q ss_pred hhh-----h-----cCC------CCccEEEEcCcccCCccccc--EEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----S-----QGI------EYADSFNVNVNKWLLTAFDS--SCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----l-----dGi------~~aDSIs~d~HK~L~~P~g~--G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ + .|. -.+|.+..++||++++|.|+ |+++.+++.... .+.....+ .+.
T Consensus 244 ~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~-~l~~~~~~-----------~g~ 311 (464)
T 1ibj_A 244 HAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAK-EVYFLQNS-----------EGS 311 (464)
T ss_dssp HTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHH-HHHHHHHH-----------TTC
T ss_pred HHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHH-HHHHHHHh-----------cCC
Confidence 331 1 221 24799999999999999876 999887643222 11100000 000
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------------hccCCCcEEeCCC---ceeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGK--------------VRRDPRFEISNDV---RLGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~--------------L~~~~~~eil~~~---~~~iV~Fr 697 (891)
+ ...+.+|+.++.+ +.+...+++..++++.+.+. |+++|++++..+. ..++++|.
T Consensus 312 ~------~~~~~~~a~~~al--~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~ 383 (464)
T 1ibj_A 312 G------LAPFDCWLCLRGI--KTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFI 383 (464)
T ss_dssp B------CCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEE
T ss_pred C------CCHHHHHHHHhch--hhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEE
Confidence 1 1234556655543 23333333333333333333 3344555555432 24799999
Q ss_pred ecCCcchhhhhhHHHHHHHHHhCCcEEEeec-----------cc------------cCCeEE-EEecCCCCHHHHHHHHH
Q psy852 698 LRSENNLIADQNNRKLLEDINASGRLHMVPA-----------SQ------------EQNDEV-FELQERKRKDDLAYKRS 753 (891)
Q Consensus 698 ~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s-----------~~------------~g~~~l-~sv~~~tT~edId~li~ 753 (891)
+.+ ......+.+.|...|+.+..+. .. .+...+ ++++. ||++++++
T Consensus 384 l~~------~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~ 453 (464)
T 1ibj_A 384 TGS------VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLIS 453 (464)
T ss_dssp CSC------HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHH
T ss_pred ECC------HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHH
Confidence 842 1123456777665554432221 00 112456 88875 89999999
Q ss_pred HHHHHH
Q psy852 754 FFVRML 759 (891)
Q Consensus 754 ~L~ei~ 759 (891)
.|++..
T Consensus 454 ~L~~al 459 (464)
T 1ibj_A 454 DLDIAF 459 (464)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998775
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00035 Score=79.66 Aligned_cols=281 Identities=14% Similarity=0.055 Sum_probs=144.6
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++++++.+.+..... +++ +++||+|+|..++.++|.....+. ......+|.....-|-...-+..
T Consensus 97 ~~~la~~l~~~~~~~~~-~v~--~~~gGseA~~~al~~~~~~~~~~g----------~~~~~~vi~~~~~yhg~~~~~~~ 163 (460)
T 3gju_A 97 SITLAKMIIDRAPKGMS-RVY--FGLSGSDANETNIKLIWYYNNVLG----------RPEKKKIISRWRGYHGSGVMTGS 163 (460)
T ss_dssp HHHHHHHHHHHSCTTEE-EEE--EESSHHHHHHHHHHHHHHHHHHTT----------CTTCCEEEEETTCCCCSSHHHHH
T ss_pred HHHHHHHHHhhCCCCcC-EEE--EeCchHHHHHHHHHHHHHHHHhcC----------CCCCCEEEEECCCcCCCCHHHhh
Confidence 34566666666432222 455 788999999999999987653221 11123445555555654444433
Q ss_pred HcC------------ceEEEecCCC-----CCCcC--------HHHHHHHHHhhhhcCCccEEEEe----cCCccc----
Q psy852 525 MAF------------VRLKILEPDD-----KNSLR--------GATLRQVMQQDETMGYIPFFVST----TLGTTS---- 571 (891)
Q Consensus 525 l~g------------v~v~~Vp~d~-----~G~mD--------~~~Le~aI~~d~~~g~ip~~Vva----taGTT~---- 571 (891)
+.+ ..+..+|... +..++ +++|+++|++... ..+-++++. +.|...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~-~~~aaii~ep~~~~~G~~~~~~~ 242 (460)
T 3gju_A 164 LTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGP-ETIAAFIGEPILGTGGIVPPPAG 242 (460)
T ss_dssp HCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCG-GGEEEEEECSSBSTTTSBCCCTT
T ss_pred ccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCC-CCEEEEEECCccCCCCCccCCHH
Confidence 322 1355555321 22233 5888888875211 112222222 223222
Q ss_pred --------hhhh-----hc----CC-------------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccC---
Q psy852 572 --------CYRK-----SQ----GI-------------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVD--- 617 (891)
Q Consensus 572 --------c~~~-----ld----Gi-------------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~--- 617 (891)
|.+| +| |+ -..|-++++ |.++.. ...|+++.+++ +.+.+...
T Consensus 243 ~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l~gG~~~lg~v~~~~~--i~~~~~~~~~~ 318 (460)
T 3gju_A 243 YWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIA--KGLTSAYAPLSGVIVADR--VWQVLVQGSDK 318 (460)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeee--hhhcCCCCCeEEEEECHH--HHHHHhccccc
Confidence 4331 11 11 124777765 998776 57898888754 22222110
Q ss_pred CCccccCCCCCccccCCcccccccccchHHHH---HHHHHHHhhHHHHHHHH-HHHHHHHHHHhccCCCcEEeCCCceeE
Q psy852 618 PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWF---VIRTYGLSGLQKYIRRH-CELAKLFEGKVRRDPRFEISNDVRLGL 693 (891)
Q Consensus 618 ~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~---~L~~lG~~G~~~~i~~~-~~lA~~L~~~L~~~~~~eil~~~~~~i 693 (891)
...+.+. .+. ....+.+.+ +|+.+..+.+.+.+++. ..+.+.|.+.+++.+.+..+. +...+
T Consensus 319 ~~~~~~~---------~t~----~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~g~~ 384 (460)
T 3gju_A 319 LGSLGHG---------WTY----SAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVR-GDGML 384 (460)
T ss_dssp HCSCSCC---------CTT----TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTE
T ss_pred ccccccC---------CCC----CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-eeeEE
Confidence 0000100 011 112233333 34433344433333322 333444445555555544332 23346
Q ss_pred EEEEecCCcch-----hhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 694 VCFRLRSENNL-----IADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 694 V~Fr~~~~~~~-----~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+.|.+.+.... ........+.+.|.++|+++.... ....+ +++....|+++|+++++.|++++.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 454 (460)
T 3gju_A 385 AAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP---QGDILGFAPPLCLTREQADIVVSKTADAVK 454 (460)
T ss_dssp EEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS---SSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 66776532110 012346688899999998743322 33556 988888999999999999998875
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00015 Score=82.44 Aligned_cols=280 Identities=10% Similarity=0.029 Sum_probs=134.7
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++++++.+.+..... +++ +++||+|+|..++.++|..+.... ...++-+|+....-|-+..-+..+
T Consensus 90 ~~la~~l~~~~~~~~~-~v~--~~~sGseA~~~al~~~~~~~~~~G----------~~~~~~vi~~~~~yhg~~~~~~~~ 156 (448)
T 3dod_A 90 TQLAETLIDISPKKLT-RVF--YSDSGAEAMEIALKMAFQYWKNIG----------KPEKQKFIAMKNGYHGDTIGAVSV 156 (448)
T ss_dssp HHHHHHHHHHSCTTEE-EEE--EESSHHHHHHHHHHHHHHHHHHTT----------CTTCCEEEEEC-------------
T ss_pred HHHHHHHHHhCCCCCC-EEE--EeCchHHHHHHHHHHHHHHHHhhC----------CCCCCEEEEECCCCCCccHHHHHh
Confidence 3556666666532112 455 788999999999999997643221 011233444444445444333322
Q ss_pred cC------------ceEEEecCCCCCCc-----------CHHHHHHHHHhhhhcCCccEEE-EecC-Ccc---c------
Q psy852 526 AF------------VRLKILEPDDKNSL-----------RGATLRQVMQQDETMGYIPFFV-STTL-GTT---S------ 571 (891)
Q Consensus 526 ~g------------v~v~~Vp~d~~G~m-----------D~~~Le~aI~~d~~~g~ip~~V-vata-GTT---~------ 571 (891)
.+ ..+..+|.+...+. |+++|+++|++... .+-+++ .... +.+ .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~--~~a~vi~ep~~~~~~G~~~~~~~~l 234 (448)
T 3dod_A 157 GSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHE--EIAALSIESMVQGASGMIVMPEGYL 234 (448)
T ss_dssp ----------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGG--GEEEEEEESSEESTTTCEECCTTHH
T ss_pred cCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCC--CEEEEEEeCcccCCCCeecCCHHHH
Confidence 22 23455666554444 58999999983211 122222 2222 322 1
Q ss_pred ------hhhh-----hc---------CC--------CCccEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccc
Q psy852 572 ------CYRK-----SQ---------GI--------EYADSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQ 622 (891)
Q Consensus 572 ------c~~~-----ld---------Gi--------~~aDSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~ 622 (891)
|.+| +| |- -..|.++++ |.++..+ ++|+++.+++ +.+.+... +-.
T Consensus 235 ~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~s--K~l~~G~~~ig~v~~~~~--~~~~~~~~--~~~ 308 (448)
T 3dod_A 235 AGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAG--KGITGGYLPIAVTFATED--IYKAFYDD--YEN 308 (448)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEEEHH--HHHTTCSC--GGG
T ss_pred HHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEec--ccccCCcCceEEEEECHH--HHHHhhhc--ccc
Confidence 4331 11 10 114777765 9887763 7888888654 22222110 000
Q ss_pred cCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc---CCCcEEeCCCceeEEEEEec
Q psy852 623 HGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR---DPRFEISNDVRLGLVCFRLR 699 (891)
Q Consensus 623 ~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~---~~~~eil~~~~~~iV~Fr~~ 699 (891)
.. .. ....+... -++.....-.+|+.+..++ .+++..++.+++.+.|++ .+.+..+ +....++.+.+.
T Consensus 309 ~~---~~-~~~~t~~~-~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~g~~~~~~~~ 379 (448)
T 3dod_A 309 LK---TF-FHGHSYTG-NQLGCAVALENLALFESEN---IVEQVAEKSKKLHFLLQDLHALPHVGDI-RQLGFMCGAELV 379 (448)
T ss_dssp CC---CC-CCCCTTTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETTEEEEEEC
T ss_pred CC---cc-cccCCCCc-CHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHhcCCCeEEE-EeeeEEEEEEEc
Confidence 00 00 00011111 1111222223333333333 344445555555555543 3333222 122346677775
Q ss_pred CCcch--hh---hhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 700 SENNL--IA---DQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 700 ~~~~~--~~---d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..... .. ......+.+.|.++|+++. +. + ..+ ++++...|+++|+++++.|++.+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~-~~---~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 441 (448)
T 3dod_A 380 RSKETKEPYPADRRIGYKVSLKMRELGMLTR-PL---G-DVIAFLPPLASTAEELSEMVAIMKQAIH 441 (448)
T ss_dssp SBTTTTBCCCGGGCHHHHHHHHHHHTTEECC-EE---T-TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCcccccccchhhHHHHHHHHHHHHCCcEEe-cc---C-CEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 32100 00 0114678888999997742 22 3 456 888888999999999999998874
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.5e-05 Score=87.33 Aligned_cols=164 Identities=10% Similarity=0.043 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHhcCCCCCccc-cChhHHHHHHHHHHHHHHHcC--CCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q psy852 29 SYPSVLADMLSDAIGCIGFSWA-ASPSCTELETIVLDWLGKAIG--LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQ 105 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~-~~p~~~~~E~~~~~~l~~l~g--~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~ 105 (891)
..|.++..+...+.+. .|. ......++++.+.+++++..| .+... |+.+
T Consensus 116 ~~~~~v~a~~~~~~~~---~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~------------~~~i------------- 167 (533)
T 3f6t_A 116 NRDKVVAEWVNGAVAN---NYPVPDRCLVNTEKIINYFLQELSYKDANLAE------------QTDL------------- 167 (533)
T ss_dssp CHHHHHHHHHHHHHTC---SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGG------------GEEE-------------
T ss_pred CCcHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHHHHHHhcCCCCCCCC------------cceE-------------
Confidence 3566666666665532 222 233456888888888876633 33210 0011
Q ss_pred CCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC----CCCcccHHH
Q psy852 106 PQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD----DKNSLRGAT 181 (891)
Q Consensus 106 ~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d----~~g~id~~~ 181 (891)
.+|+||+...++....+..... ..+...|+++.-+|.+...++...+.+++.++++ .++.+|+++
T Consensus 168 -~~t~G~t~al~~~~~~l~~~~l----------~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~ 236 (533)
T 3f6t_A 168 -FPTEGGTAAIVYAFHSLAENHL----------LKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNE 236 (533)
T ss_dssp -EEEEHHHHHHHHHHHHHHHTTS----------SCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHH
T ss_pred -EEECCHHHHHHHHHHHhhhhhc----------cCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHH
Confidence 1356775433222222211110 1122358888999999988777777788888885 468899999
Q ss_pred HHHHHHhhhhcCCcceEEEeecccCccccccCHH---HHHHHHH-HcCCceeeeccccCC
Q psy852 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA---EIGPVAK-EFDVWLHVDGAYAGS 237 (891)
Q Consensus 182 L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~~i~~-~~~~~lHvDaA~GG~ 237 (891)
|++.+++. +.+|+++..+|.+|.+-|.+ +|+++|+ ++++++++|.+|+++
T Consensus 237 l~~~l~~~------~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~ 290 (533)
T 3f6t_A 237 IEKLKDPS------IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAF 290 (533)
T ss_dssp HHHHSCTT------EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGG
T ss_pred HHHHhCCC------CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcccc
Confidence 99988643 34677778899999997777 7778888 689999999999653
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=7.4e-05 Score=81.05 Aligned_cols=222 Identities=13% Similarity=0.096 Sum_probs=137.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+. . -.|++. -+|.+....+...|.+++.+|.++++.+|
T Consensus 78 ~v~--~~~G~~~al~~~~~~~-----g-----------------d~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d 132 (335)
T 1uu1_A 78 NVS--VGNGADEIIYVMMLMF-----D-----------------RSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIP 132 (335)
T ss_dssp GEE--EESSHHHHHHHHHHHS-----S-----------------EEEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCC
T ss_pred HEE--EcCChHHHHHHHHHHh-----C-----------------CcEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCC
Confidence 455 7889999998887664 1 136677 78888888888888899999998778888
Q ss_pred HHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh--h--hc---------C-C-----CCccEEEEcCccc
Q psy852 543 GATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR--K--SQ---------G-I-----EYADSFNVNVNKW 592 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~--~--ld---------G-i-----~~aDSIs~d~HK~ 592 (891)
+++| +. ...++++. ..|+.. |.. . +| . + ...+-+..+.||+
T Consensus 133 ~~~l-----~~----~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 203 (335)
T 1uu1_A 133 EVNV-----GE----GDVVFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKA 203 (335)
T ss_dssp CCCC-----CT----TEEEEEESSCTTTCCCCCHHHHHHHHHTTCEEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTT
T ss_pred HHHc-----CC----CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCEEEEECcchhhcchhHHHHhhhCCCEEEEecchhh
Confidence 8777 11 11222222 244443 110 0 01 0 1 1235677899999
Q ss_pred CCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-hhHHHHHHHHHHH
Q psy852 593 LLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SGLQKYIRRHCEL 669 (891)
Q Consensus 593 L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G~~~~i~~~~~l 669 (891)
++.| ..+|+++.++ +.+ +.+. .... ++ ...+.++++...+.. +.+++..++..++
T Consensus 204 ~g~~G~r~G~~~~~~-~~~-~~l~~~~~~--------------~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 261 (335)
T 1uu1_A 204 FSLAAQRVGYVVASE-KFI-DAYNRVRLP--------------FN------VSYVSQMFAKVALDHREIFEERTKFIVEE 261 (335)
T ss_dssp TTCGGGCCEEEEECH-HHH-HHHHHHSCT--------------TC------SCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCcccCeEEEEeCH-HHH-HHHHHhcCC--------------CC------cCHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 8744 4589998843 322 2221 1110 11 112333344333332 3577778888899
Q ss_pred HHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHH
Q psy852 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDL 748 (891)
Q Consensus 670 A~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edI 748 (891)
++++.+.|++. ++++. ++..+.+.+++++ ....++.+.|.+.|+.+.. ....+ ++++ +.+|+
T Consensus 262 ~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~-----~~~~iRis~~---~~~~i 324 (335)
T 1uu1_A 262 RERMKSALREM-GYRIT-DSRGNFVFVFMEK-------EEKERLLEHLRTKNVAVRS-----FREGVRITIG---KREEN 324 (335)
T ss_dssp HHHHHHHHHHH-TCCBC-CCCSSEEEEECCT-------HHHHHHHHHHHHHTEEEEE-----ETTEEEEECC---CHHHH
T ss_pred HHHHHHHHHHC-CcEEc-CCCCeEEEEECCC-------CCHHHHHHHHHHCCEEEEE-----CCCeEEEEeC---CHHHH
Confidence 99999999886 56653 4455677787742 1345788888888987443 23456 8874 46889
Q ss_pred HHHHHHHHH
Q psy852 749 AYKRSFFVR 757 (891)
Q Consensus 749 d~li~~L~e 757 (891)
+++++.|++
T Consensus 325 ~~~~~~l~~ 333 (335)
T 1uu1_A 325 DMILRELEV 333 (335)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999988875
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00012 Score=83.84 Aligned_cols=268 Identities=14% Similarity=0.005 Sum_probs=145.4
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++++.+++.+..... +++ +++||+|+|..++..+|..+..+.. ....-+|.....-|-...-+..+
T Consensus 121 ~~L~e~la~~~~~~~~-~v~--~~~sGseA~~~Alk~a~~~~~~~g~----------~g~~~ii~~~~~yhg~~~~~~~~ 187 (457)
T 3tfu_A 121 ARLAKLLVDITPAGLD-TVF--FSDSGSVSVEVAAKMALQYWRGRGL----------PGKRRLMTWRGGYHGDTFLAMSI 187 (457)
T ss_dssp HHHHHHHHHHSSTTEE-EEE--EESSHHHHHHHHHHHHHHHHHHTTC----------TTCCEEEEETTCCCCSSHHHHTT
T ss_pred HHHHHHHHHhCCCCcC-EEE--EeCcHHHHHHHHHHHHHHHHHhcCC----------CCCceEEEEcCCcCCccHHhhcc
Confidence 4666677766642222 455 7889999999999999986643311 11223444444444433222222
Q ss_pred ---------------cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE-----ecCCccc------------hh
Q psy852 526 ---------------AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS-----TTLGTTS------------CY 573 (891)
Q Consensus 526 ---------------~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv-----ataGTT~------------c~ 573 (891)
.++....+|.+..+..|+++|+++|++... .+-++++ +..|... |.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~--~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 265 (457)
T 3tfu_A 188 CDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG--ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR 265 (457)
T ss_dssp SCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG--GEEEEEECSSEECTTTCEECCTHHHHHHHHHHH
T ss_pred cCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC--CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 122333344444445789999999985311 1222222 2234332 43
Q ss_pred hh-----hcC----C-------------CCccEEEEcCcccCCccc-ccEEEEEeCCccchhhhcc-CCCccccCCCCCc
Q psy852 574 RK-----SQG----I-------------EYADSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVV-DPLYLQHGHEGAI 629 (891)
Q Consensus 574 ~~-----ldG----i-------------~~aDSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~ 629 (891)
++ +|. + -..|-++++ |.+++.+ +.|+++.+++ +.+.+.. .+.-+.+
T Consensus 266 ~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~s--K~l~gG~~~lG~v~~~~~--i~~~~~~~~~~~~~~------ 335 (457)
T 3tfu_A 266 RYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVG--KALTGGYLSLAATLCTAD--VAHTISAGAAGALMH------ 335 (457)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCCEEEEEEHH--HHHHHHHSSSCSCCC------
T ss_pred HcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEC--hhhhCCCcceEEEEEcHH--HHHHhhccCCCceeE------
Confidence 31 111 1 125777664 8887763 7899988765 2222221 1110000
Q ss_pred cccCCcccccccccchHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHhccC---CCcEEeCCCceeEEEEEecCCcc
Q psy852 630 DYRHWGIPLSRRFRSLKLWFV---IRTYGLSGLQKYIRRHCELAKLFEGKVRRD---PRFEISNDVRLGLVCFRLRSENN 703 (891)
Q Consensus 630 ~~~~~ti~~SRr~~aL~lW~~---L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~---~~~eil~~~~~~iV~Fr~~~~~~ 703 (891)
..+. ....+.+.+. |+.+..+ +..++..++.+++.+.|+++ +.+..+. ...+++.|.+...
T Consensus 336 ---~~t~----~~n~~a~aaa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr-~~G~~~~i~l~~~-- 402 (457)
T 3tfu_A 336 ---GPTF----MANPLACAVSVASVELLLGQ---DWRTRITELAAGLTAGLDTARALPAVTDVR-VCGAIGVIECDRP-- 402 (457)
T ss_dssp ---CCTT----TTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTEEEEE-ECSSCEEEEESSC--
T ss_pred ---ecCC----CcCHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCeeeee-cCCeEEEEEECCc--
Confidence 0111 1122333333 3333333 34556667777888877764 3333221 2334667777532
Q ss_pred hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 704 LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 704 ~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
....++.+.|.++|+++ .+ .+ ..+ +++...+|++||+++++.|++++.
T Consensus 403 ----~~~~~~~~~l~~~Gv~v-~~---~~-~~lRi~p~~~~t~eei~~~l~~L~~~l~ 451 (457)
T 3tfu_A 403 ----VDLAVATPAALDRGVWL-RP---FR-NLVYAMPPYICTPAEITQITSAMVEVAR 451 (457)
T ss_dssp ----CCHHHHHHHHHHTTEEC-CC---BT-TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHCCeEE-Ee---cC-CEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 12567888999999773 22 12 356 888888899999999999998874
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0002 Score=82.47 Aligned_cols=281 Identities=10% Similarity=0.027 Sum_probs=143.8
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++++++.+.+..... +++ ++.||+|+|..++.++|..+..+.. ....-+|.....-|-...-+..
T Consensus 99 ~~~la~~l~~~~~~~~~-~v~--~~~sGseA~~~Aik~a~~~~~~~g~----------~~~~~vi~~~~~yHg~~~~~~~ 165 (476)
T 3i5t_A 99 AARLAEKIATLTPGDLN-RIF--FTTGGSTAVDSALRFSEFYNNVLGR----------PQKKRIIVRYDGYHGSTALTAA 165 (476)
T ss_dssp HHHHHHHHHTTSSTTCC-EEE--EESSHHHHHHHHHHHHHHHHHHTTC----------TTCCEEEEETTCCCCSSHHHHH
T ss_pred HHHHHHHHHhcCCCCcC-EEE--EeCchHHHHHHHHHHHHHHHHhcCC----------CCCCEEEEEcCCcCcCChhhcc
Confidence 34566666666532122 455 7889999999999999987643311 1123345555555644433333
Q ss_pred HcC------------ceEEEecCCC--CC-CcC--------HHHHHHHHHhhhhcCCccEEEE-ec---CCccc------
Q psy852 525 MAF------------VRLKILEPDD--KN-SLR--------GATLRQVMQQDETMGYIPFFVS-TT---LGTTS------ 571 (891)
Q Consensus 525 l~g------------v~v~~Vp~d~--~G-~mD--------~~~Le~aI~~d~~~g~ip~~Vv-at---aGTT~------ 571 (891)
+.+ ..+..++... .+ ..| +++|+++|++... ..+-++++ .. .|...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~-~~~aavi~ep~~~~~G~~~~~~~~L 244 (476)
T 3i5t_A 166 CTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP-DTIAAFLAEPILASGGVIIPPAGYH 244 (476)
T ss_dssp TCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG-GGEEEEEECSSBTTTTSBCCCTTHH
T ss_pred ccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC-CCEEEEEECCccCCCCcccCCHHHH
Confidence 222 1233444211 11 122 6788888864211 11222222 22 22211
Q ss_pred ------hhhh------------------------hcCCCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCC--
Q psy852 572 ------CYRK------------------------SQGIEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDP-- 618 (891)
Q Consensus 572 ------c~~~------------------------ldGi~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~-- 618 (891)
|.++ ..|+ ..|.++++ |.+++. .+.|+++.+++ +.+.+....
T Consensus 245 ~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v-~pdi~t~s--K~l~~G~~plg~v~~~~~--i~~~~~~~~~~ 319 (476)
T 3i5t_A 245 ARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGV-VPDIITFA--KGVTSGYVPLGGLAISEA--VLARISGENAK 319 (476)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCC-CCSEEEEC--GGGGTTSSCCEEEEECHH--HHHTTSGGGCT
T ss_pred HHHHHHHHHcCCEEEEEecccCCccccCceeeecccCC-Ccchhhhh--hhhcCCCcCeEEEEECHH--HHHHHhcCCcc
Confidence 3321 1122 24777765 988876 67788888654 222221110
Q ss_pred -CccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC---CcEEeCCCceeEE
Q psy852 619 -LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP---RFEISNDVRLGLV 694 (891)
Q Consensus 619 -~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~~iV 694 (891)
..+.+ ..+.. .-++.......+|+.+..+ +.+++..++.+++.+.|+.+. .+..+ +..-.++
T Consensus 320 ~~~~~~---------~~t~~-~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-~~~G~~~ 385 (476)
T 3i5t_A 320 GSWFTN---------GYTYS-NQPVACAAALANIELMERE---GIVDQAREMADYFAAALASLRDLPGVAET-RSVGLVG 385 (476)
T ss_dssp TCEECC---------CCTTT-TCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEE-EEETTEE
T ss_pred cccccc---------cCCCC-cCHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCcee
Confidence 00000 01111 1112222223334433333 345566667777777776543 33222 1233466
Q ss_pred EEEecCCcc--hh---hhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 695 CFRLRSENN--LI---ADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 695 ~Fr~~~~~~--~~---~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
.|.+..... .. .......+.+.|.++|+++.. .+ ..+ +++...+|+++|+++++.|++.+..+.
T Consensus 386 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 386 CVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRP----LG-DLCVISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp EEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEE----ET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCccccccccchhHHHHHHHHHHHHCCCEEEe----cC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 677653210 00 112456788889999977433 13 456 888888999999999999999875443
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00014 Score=81.80 Aligned_cols=276 Identities=11% Similarity=0.019 Sum_probs=146.2
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++++.+++.+...+. +|+ +++||+|++..++..+|... . ++-+|+....-|.+..-+..
T Consensus 87 ~~~l~~~la~~~~~~~~-~v~--~~~gg~ea~~~a~~~~~~~~-~---------------~~~vi~~~~~yhg~~~~~~~ 147 (433)
T 1zod_A 87 VVDLATRLANITPPGLD-RAL--LLSTGAESNEAAIRMAKLVT-G---------------KYEIVGFAQSWHGMTGAAAS 147 (433)
T ss_dssp HHHHHHHHHHHSCTTCC-EEE--EESCHHHHHHHHHHHHHHHH-T---------------CCEEEEETTCCCCSSHHHHH
T ss_pred HHHHHHHHHHhCCCCcC-EEE--EeCchHHHHHHHHHHHHHhh-C---------------CCeEEEECCCcCCCChhHHh
Confidence 34566666666643232 455 78899999999998877421 0 12245555566655544443
Q ss_pred Hc-----------CceEEEecCCC------------CCCcCHHHHHHHHHhhhhcCCccEEEE----ecCCccc------
Q psy852 525 MA-----------FVRLKILEPDD------------KNSLRGATLRQVMQQDETMGYIPFFVS----TTLGTTS------ 571 (891)
Q Consensus 525 l~-----------gv~v~~Vp~d~------------~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~------ 571 (891)
+. ...++.++++. .+.+|+++|+++|++... ..+.++++ +..|+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~~vi~~p~~~~~G~~~~~~~~l 226 (433)
T 1zod_A 148 ATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSS-GNLAAFIAEPILSSGGIIELPDGYM 226 (433)
T ss_dssp TCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCC-SCEEEEEECSEETTTTCEECCTTHH
T ss_pred hcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHH
Confidence 21 11345555422 123579999999975210 12223333 2245432
Q ss_pred ------hhhh-----hc---------CC--------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCcccc
Q psy852 572 ------CYRK-----SQ---------GI--------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQH 623 (891)
Q Consensus 572 ------c~~~-----ld---------Gi--------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~ 623 (891)
|.++ +| |- ...|.++++ |+++..+++|+++.+++ +.+.+... .+..
T Consensus 227 ~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~s--K~~~~G~~ig~~~~~~~--~~~~~~~~-~~~~- 300 (433)
T 1zod_A 227 AALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLS--KTLGAGLPLAAIVTSAA--IEERAHEL-GYLF- 300 (433)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSSCEEEEECHH--HHHHHHHT-TCCC-
T ss_pred HHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEec--ccccCCCCeeEEEEhHH--HHHhhccC-CCCC-
Confidence 4331 11 10 124666655 98887788999998763 22222211 0100
Q ss_pred CCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEec
Q psy852 624 GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLR 699 (891)
Q Consensus 624 ~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~ 699 (891)
..+... -++.....-.+++.+..++ ..++..++++++.++|+++ +.+... ++..+++.|.+.
T Consensus 301 ---------~~t~~~-~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~i~~~ 366 (433)
T 1zod_A 301 ---------YTTHVS-DPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLLLGVEIV 366 (433)
T ss_dssp ---------CCTTTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEE
T ss_pred ---------CCCCCc-CHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEe
Confidence 011111 1111122223444333333 4455666777777777653 433322 233456677764
Q ss_pred CCcch--hhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 700 SENNL--IADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 700 ~~~~~--~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+.... .-.....++.+.|.+.|+++..+........+ ++++..+|+++|+++++.|++++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~ 430 (433)
T 1zod_A 367 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430 (433)
T ss_dssp EETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence 31000 00123567888888899874433322222566 888888999999999999988763
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00032 Score=81.22 Aligned_cols=261 Identities=10% Similarity=-0.019 Sum_probs=149.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +++|+++++..++.+... .| ..++-.|+++.-.|.+...++.+.|.+++.+|.+++ ..
T Consensus 155 ~i~--~t~G~~~ai~~~~~~l~~--------------~g-d~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~ 217 (498)
T 3ihj_A 155 NIY--LTTGASDGISTILKILVS--------------GG-GKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWA 217 (498)
T ss_dssp GEE--EESSHHHHHHHHHHHHCC--------------CC-GGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTB
T ss_pred cEE--EcCCHHHHHHHHHHHHcC--------------CC-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCC
Confidence 566 688999998877764311 00 001236888888999999999999999999998765 48
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEec----CCccc-----------hhhh-----hc---------CC-C----------
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVSTT----LGTTS-----------CYRK-----SQ---------GI-E---------- 580 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~-----------c~~~-----ld---------Gi-~---------- 580 (891)
+|+++|+++|++.......-++++.+ .|++. |.++ .| +- .
T Consensus 218 ~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~ 297 (498)
T 3ihj_A 218 LNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYE 297 (498)
T ss_dssp CCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHH
Confidence 99999999998753221122233223 45443 3321 11 10 0
Q ss_pred -------CccEEEE-cCcccCC--cccccEEEEE--eCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHH
Q psy852 581 -------YADSFNV-NVNKWLL--TAFDSSCLWV--ADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLW 648 (891)
Q Consensus 581 -------~aDSIs~-d~HK~L~--~P~g~G~llv--R~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW 648 (891)
.+..|++ +++|.+. .-.-.|++++ .++............++ ....+.++
T Consensus 298 ~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~-------------------~~~~~~q~ 358 (498)
T 3ihj_A 298 MGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRL-------------------CPPVSGQA 358 (498)
T ss_dssp TCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSC-------------------CCCHHHHH
T ss_pred hcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccC-------------------CCCHHHHH
Confidence 0113444 8999983 3355787775 34432221111100000 01122333
Q ss_pred HHHHHHH------------HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEE-EecCCcc-----hhhhhhH
Q psy852 649 FVIRTYG------------LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF-RLRSENN-----LIADQNN 710 (891)
Q Consensus 649 ~~L~~lG------------~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~F-r~~~~~~-----~~~d~ln 710 (891)
+....+. .....++.++..++++++.+.|++++++++.. ++.++..| ++..... ...+...
T Consensus 359 a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-p~gg~~~~~~l~~p~~~~~~~~~~g~~~ 437 (498)
T 3ihj_A 359 AMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNP-LQGAMYAFPRIFIPAKAVEAAQAHQMAP 437 (498)
T ss_dssp HHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBSSEECCEECCCHHHHHHHHHTTSCH
T ss_pred HHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecC-CCeEEEEEEeccCchhhhHHHHhcCCCc
Confidence 3333221 12234555677888999999999988988764 45554444 4431100 0001122
Q ss_pred HH--HHHHHHhCCcEEEeeccc---cCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 711 RK--LLEDINASGRLHMVPASQ---EQNDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 711 ~~--L~~~L~~~G~~~~s~s~~---~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
.. +.+.|.+.|++++.++.. .+...+ +++. .++++++.+++.|.+....+
T Consensus 438 ~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 438 DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL--PPVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp HHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHH
Confidence 33 345566789886655543 234456 8874 68999999999999887533
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00021 Score=79.78 Aligned_cols=92 Identities=14% Similarity=0.027 Sum_probs=74.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEec--CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH---HHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA---EIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~--d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~ 218 (891)
.|++..-+|.+....+...|.+++.++. ++++.+|+++|++.+++.. ..+.+++.+..+|.||.+-+.+ +|+
T Consensus 133 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~p~NPtG~~~~~~~l~~i~ 209 (409)
T 4eu1_A 133 RIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP---EGSVILVHACAHNPTGVDPTHDDWRQVC 209 (409)
T ss_dssp EEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred EEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCC---CCcEEEEECCCCCCCCCCCCHHHHHHHH
Confidence 4777888999998888888889999998 4568999999999997531 1245677677799999997755 599
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|+++|+++++|.+|+++.
T Consensus 210 ~~~~~~~~~li~De~y~~~~ 229 (409)
T 4eu1_A 210 DVIKRRNHIPFVDMAYQGFA 229 (409)
T ss_dssp HHHHHTTCEEEEEESCTTTT
T ss_pred HHHHhCCcEEEEeccccccc
Confidence 99999999999999996643
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=87.79 Aligned_cols=277 Identities=15% Similarity=0.090 Sum_probs=179.6
Q ss_pred HHHHHHHHhhccCCc-cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHH
Q psy852 447 ELAKLFEGKVRRDPR-FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAA 523 (891)
Q Consensus 447 elAr~l~~~L~~~~~-~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa 523 (891)
++.+.+++.+...+. -+++ +++|+++++. ++... ..+.-.|+++...|++ +...+
T Consensus 39 ~~~~~la~~~~~~~~~~~v~--~~~g~t~al~-~~~~~-------------------~~~gd~vi~~~~~~~~~~~~~~~ 96 (384)
T 3zrp_A 39 YSLKGLRYVMGASKNYQPLI--IPGGGTSAME-SVTSL-------------------LKPNDKILVVSNGVFGDRWEQIF 96 (384)
T ss_dssp HHHHHHHHHHTCCTTSEEEE--EESCHHHHHH-HGGGG-------------------CCTTCEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEE--EcCCcHHHHH-HHHhh-------------------cCCCCEEEEecCCcchHHHHHHH
Confidence 344455666654431 2455 6889999998 66432 1122357777778865 44555
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcC---------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQG--------- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldG--------- 578 (891)
...|.+++.+|.+.++.+|+++|+++|++.. ...++++ +..|+.. |+++ +|+
T Consensus 97 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~ 173 (384)
T 3zrp_A 97 KRYPVNVKVLRPSPGDYVKPGEVEEEVRKSE---YKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEV 173 (384)
T ss_dssp TTSSCEEEEECCSTTCCCCHHHHHHHHHHSC---EEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCC
T ss_pred HHcCCcEEEecCCCCCCCCHHHHHHHHHhCC---CcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccc
Confidence 6778999999999999999999999998731 1122222 2245544 4442 232
Q ss_pred -CC--CccEEEEcCcccCCcccccEEEEEeCCccchhhh-c---cCCCccccCCCCCccccC----Cccc-cccc-ccch
Q psy852 579 -IE--YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSAL-V---VDPLYLQHGHEGAIDYRH----WGIP-LSRR-FRSL 645 (891)
Q Consensus 579 -i~--~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l-~---~~~~Yl~~~~e~~~~~~~----~ti~-~SRr-~~aL 645 (891)
+. .+|.+++++|||+++|.|+|+++++++. + +.+ . ....|+...... ..... .... ++-. ...+
T Consensus 174 ~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~ 250 (384)
T 3zrp_A 174 KAEEWNVDVYLTASQKALGSAAGLGLLLLSPKA-L-SILDSQNSIAGYYLDLRNWL-PVMRGAEEGKAAYFATPPVHVIL 250 (384)
T ss_dssp CTTTTTCSEEEEETTSTTCCCSSEEEEEECHHH-H-HHHHHCCCSCCSTTCHHHHH-HHHHHHHTTCCCCSSCCCHHHHH
T ss_pred cccccCCCEEEecCcccccCCCceEEEEECHHH-H-HHhcCCCCCCcccccHHHHH-HHHHhhcccCCCcCCCCCHHHHH
Confidence 12 4799999999999999999999997652 2 112 1 001111000000 00000 0000 1111 2234
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----RLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
.++.+++.+...++++..++..++++++.+.|++. +++++.++ ..++++|++.+. ...++.+.|.++|
T Consensus 251 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g 322 (384)
T 3zrp_A 251 QLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILKVA-------DPQKVLAGTVNEG 322 (384)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECSSS-------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEECCCC-------CHHHHHHHHHHCC
Confidence 56677787778889999999999999999999998 88877654 357888998642 4567889999999
Q ss_pred cEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 722 ~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+.+..+..... ..+ ++++..+|++||+++++.|+++..
T Consensus 323 i~v~~g~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~ 361 (384)
T 3zrp_A 323 VEFAPGVHPAF-KYFRIGHMGWVTPNDAIIAISVIERTLR 361 (384)
T ss_dssp CCCEECCCTTC-CEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCc-CEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 87553332222 556 998888999999999999998874
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00011 Score=82.70 Aligned_cols=57 Identities=9% Similarity=-0.005 Sum_probs=47.9
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+++.. ..+.+|++.-.++.+|.+.| +++|.++|++||++|++|.++.|+
T Consensus 188 d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~ 248 (434)
T 3l44_A 188 NVETLKEALDKWG---HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF 248 (434)
T ss_dssp CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT
T ss_pred cHHHHHHHHHhCC---CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce
Confidence 8999999997531 12467777777888899998 999999999999999999999775
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.3e-05 Score=85.93 Aligned_cols=282 Identities=8% Similarity=0.006 Sum_probs=182.6
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAA 523 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa 523 (891)
.++++++++.+...+.-.++ +++|+++++..++.+... +.-.|+++..+|++ ...++
T Consensus 56 ~~~~~~la~~~g~~~~~~v~--~~~g~t~a~~~~~~~l~~-------------------~gd~vl~~~~~~~~~~~~~~~ 114 (386)
T 2dr1_A 56 MDTVERLREFLEVEKGEVLL--VPSSGTGIMEASIRNGVS-------------------KGGKVLVTIIGAFGKRYKEVV 114 (386)
T ss_dssp HHHHHHHHHHHTCSSSEEEE--ESSCHHHHHHHHHHHHSC-------------------TTCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEE--EeCChHHHHHHHHHHhhc-------------------CCCeEEEEcCCchhHHHHHHH
Confidence 34455666666543122355 688999999988876411 12257888888988 77777
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcC---------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQG--------- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldG--------- 578 (891)
...|.+++.+|.+.++.+|+++|+++|++.. ....++++. ..|... |.++ +|+
T Consensus 115 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~--~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~ 192 (386)
T 2dr1_A 115 ESNGRKAVVLEYEPGKAVKPEDLDDALRKNP--DVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADI 192 (386)
T ss_dssp HHTTCEEEEEECCTTCCCCHHHHHHHHHHCT--TCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCC
T ss_pred HHhCCceEEEecCCCCCCCHHHHHHHHhcCC--CCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccc
Confidence 8889999999999999999999999997521 112223322 235443 4431 221
Q ss_pred -C--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc---CCCccccCCCCCcccc-CCccccccc-ccchHHHHH
Q psy852 579 -I--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV---DPLYLQHGHEGAIDYR-HWGIPLSRR-FRSLKLWFV 650 (891)
Q Consensus 579 -i--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~---~~~Yl~~~~e~~~~~~-~~ti~~SRr-~~aL~lW~~ 650 (891)
+ ..+|.++.++||++++|.|+|+++++++ +.+.+.. ...|+.-... ..... .....++.. .....++.+
T Consensus 193 ~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~ 269 (386)
T 2dr1_A 193 KFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER--FLEIAEKMPERGWYFDIPLY-VKYLKEKESTPSTPPMPQVFGINVA 269 (386)
T ss_dssp CTTTTTCSEEEEETTSTTCCCSSCEEEEECHH--HHHHHTTCTTCCSTTCHHHH-HHHHHHHSSCSSCCCHHHHHHHHHH
T ss_pred cccccCCcEEEEeccccccCCCceEEEEECHH--HHHHHhcCCCCceEEeHHHH-HHhhccCCCCCCCCCHHHHHHHHHH
Confidence 1 1479999999999999999999999764 2222210 0011000000 00000 000011111 223455666
Q ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC---ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe
Q psy852 651 IRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV---RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV 726 (891)
Q Consensus 651 L~~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s 726 (891)
++.+... ++.+..++..++++++.+.|++. ++++..+. ..++++|+++.. ....++.+.|.++|+.+..
T Consensus 270 l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~ 342 (386)
T 2dr1_A 270 LRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPPG------IKGDEVYEAMRKRGFELAK 342 (386)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTT------CCHHHHHHHHHHTTEECEE
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCCC------CCHHHHHHHHHHCCeEEec
Confidence 7766666 78899999999999999999987 78876543 357888988521 2356788899888987554
Q ss_pred eccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 727 PASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 727 ~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+........+ ++++.++|++|++++++.|+++.+
T Consensus 343 ~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 377 (386)
T 2dr1_A 343 GYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVIN 377 (386)
T ss_dssp CCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred CccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 4433344567 999988999999999999998864
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00031 Score=78.97 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=47.8
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+++.. ..+.+|++.-.++..|.+.| +++|.++|+++|++|++|.+++|+
T Consensus 186 d~~~le~~l~~~~---~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~ 246 (429)
T 4e77_A 186 DLASVRQAFEQYP---QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF 246 (429)
T ss_dssp CHHHHHHHHHHST---TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT
T ss_pred CHHHHHHHHHhcC---CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence 8999999987531 22567777777788899998 999999999999999999999765
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=4.3e-05 Score=85.94 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=48.8
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+++.. ..+.+|+++-.++.+|.+.| +++|+++|++||++|++|.+++|+
T Consensus 185 d~~~le~~l~~~~---~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~ 245 (427)
T 3fq8_A 185 DLEAVKALFAENP---GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF 245 (427)
T ss_dssp CHHHHHHHHHHST---TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT
T ss_pred CHHHHHHHHHhCC---CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence 8999999997631 23568888888888999999 999999999999999999999765
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.02 E-value=7.3e-05 Score=84.08 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=69.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEE-eecccCccccccCHH---HHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS-TTLGTTSCCSFDNLA---EIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~-~t~Gtt~~GavDpl~---~I~~ 219 (891)
.|++..-+|......+...|.+++.||+|++| +|+++|++.+++.. +-+|+ .+..+|.||.+-|.+ +|++
T Consensus 133 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~-----~~~v~~~~~~~NPtG~~~~~~~l~~l~~ 206 (422)
T 3d6k_A 133 KWLCPVPGYDRHFTITEHFGFEMINVPMTDEG-PDMGVVRELVKDPQ-----VKGMWTVPVFGNPTGVTFSEQTCRELAE 206 (422)
T ss_dssp EEEEEESCCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHTSTT-----EEEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEeCCccHHHHHHHHHcCCEEEecCCCCCC-CCHHHHHHHHhcCC-----CeEEEEcCCCCCCCCCCCCHHHHHHHHH
Confidence 36777778988888887778899999998877 99999999986421 33444 677899999998887 7777
Q ss_pred HHH-HcCCceeeecccc
Q psy852 220 VAK-EFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~-~~~~~lHvDaA~G 235 (891)
+|+ ++|++|++|.+|+
T Consensus 207 ~~~~~~~~~li~De~y~ 223 (422)
T 3d6k_A 207 MSTAAPDFRIVWDNAYA 223 (422)
T ss_dssp CCCSSTTCEEEEECTTT
T ss_pred HHhhccCCEEEEECCcc
Confidence 777 8999999999994
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=8.1e-05 Score=83.89 Aligned_cols=57 Identities=12% Similarity=-0.015 Sum_probs=47.8
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+++.. ..+.+|++.-.++..|.+.| +++|.++|++||++|++|-++.|+
T Consensus 186 d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~ 246 (429)
T 3k28_A 186 DLESVKYAFEQFG---DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF 246 (429)
T ss_dssp CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CHHHHHHHHHhCC---CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence 7999999987532 12467777778888899999 999999999999999999999765
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00017 Score=82.17 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHhcc----CCC-cEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeE
Q psy852 661 KYIRRHCELAKLFEGKVRR----DPR-FEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDE 735 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~----~~~-~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~ 735 (891)
+..++..+++++|.+.|++ .+. +..+ ++..+++.|.+.+ ......+.+.|.++|+++..+ +...
T Consensus 352 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~~~g~~~~~~~~~------~~~~~~~~~~l~~~Gv~v~~~----g~~~ 420 (449)
T 2cjg_A 352 GLFERAVQHGKYLRARLDELAADFPAVVLDP-RGRGLMCAFSLPT------TADRDELIRQLWQRAVIVLPA----GADT 420 (449)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTTSEEE-EEETTEEEEECSS------HHHHHHHHHHHHHTTEECEEE----TTTE
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCceeeE-eeccEEEEEEECC------hHHHHHHHHHHHHCCeEEecC----CCCE
Confidence 3456667788888888865 344 4333 2345577787753 123567888888899874332 3456
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ ++++..+|++||+++++.|++.+.
T Consensus 421 iRi~~~~~~t~e~i~~~l~~l~~~l~ 446 (449)
T 2cjg_A 421 VRFRPPLTVSTAEIDAAIAAVRSALP 446 (449)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 6 988888999999999999998763
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00073 Score=76.61 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhhcCCcceEEEeecc-cCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 179 GATLRQVMQQDETMGYIPFFVSTTLG-TTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 179 ~~~L~~~l~~~~~~g~~p~~V~~t~G-tt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+++|++.+++. .+..+.+|++.-. ++ +|.+-| +++|+++|++||++|++|-++.|+
T Consensus 201 ~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 261 (452)
T 3n5m_A 201 VKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGF 261 (452)
T ss_dssp HHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred HHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCC
Confidence 89999998721 1122456666666 67 998887 999999999999999999999764
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00058 Score=77.40 Aligned_cols=278 Identities=13% Similarity=0.084 Sum_probs=140.3
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++++++.+.+... .+++ +++||+|+|..++.++|...... |...++-+|+....-|-...-+..
T Consensus 93 ~~~la~~l~~~~~~~--~~v~--~~~ggseA~~~al~~~~~~~~~~----------g~~~~~~vi~~~~~yhg~~~~~~~ 158 (452)
T 3n5m_A 93 AIKLAEKLNEWLGGE--YVIF--FSNSGSEANETAFKIARQYYAQK----------GEPHRYKFMSRYRGYHGNTMATMA 158 (452)
T ss_dssp HHHHHHHHHHHHTSC--EEEE--EESSHHHHHHHHHHHHHHHHHTT----------TCTTCCEEEEETTCCCCSSHHHHH
T ss_pred HHHHHHHHHHhCCCC--ceEE--EeCchHHHHHHHHHHHHHHHHhc----------CCCCCCEEEEECCCcCCCCHHHHh
Confidence 345666666665432 2355 78999999999999998654321 101123455555555644333332
Q ss_pred HcC------------ceEEEecCCCCCC------------cCHHHHHHHHHhhhhcCCccEEEEecC--C--ccc-----
Q psy852 525 MAF------------VRLKILEPDDKNS------------LRGATLRQVMQQDETMGYIPFFVSTTL--G--TTS----- 571 (891)
Q Consensus 525 l~g------------v~v~~Vp~d~~G~------------mD~~~Le~aI~~d~~~g~ip~~Vvata--G--TT~----- 571 (891)
+.+ ..+..+|.....+ .++++|+++|++... ..+.++++... + ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~-~~~~~vi~ep~~~n~G~~~~~~~~ 237 (452)
T 3n5m_A 159 ATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELS-ETIAAFIMEPIITGGGILMAPQDY 237 (452)
T ss_dssp SCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCG-GGEEEEEECSSBTTTTCBCCCTTH
T ss_pred cCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCC-CCEEEEEEccccCCCCeeeCCHHH
Confidence 222 1344555422111 228999999973111 12233333332 3 221
Q ss_pred -------hhhh-----hc---------CC--------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhcc---CC
Q psy852 572 -------CYRK-----SQ---------GI--------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVV---DP 618 (891)
Q Consensus 572 -------c~~~-----ld---------Gi--------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~---~~ 618 (891)
|.+| +| |- -..|.++++ |.++.. .+.|+++.+++ +.+.+.. ..
T Consensus 238 l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G~~~ig~~~~~~~--i~~~~~~~~~~~ 313 (452)
T 3n5m_A 238 MKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMA--KGITSAYLPLSATAVKRE--IYEAFKGKGEYE 313 (452)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCCEEEEEEHH--HHGGGCSSSTTC
T ss_pred HHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeec--ccccCCCcceEEEEECHH--HHHHHhhccCCC
Confidence 3331 11 10 125777765 777655 77899888654 3232221 00
Q ss_pred CccccCCCCCccccCCcccccccccchHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHhc----cCCCcEEeCCCce
Q psy852 619 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV---IRTYGLSGLQKYIRRHCELAKLFEGKVR----RDPRFEISNDVRL 691 (891)
Q Consensus 619 ~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~---L~~lG~~G~~~~i~~~~~lA~~L~~~L~----~~~~~eil~~~~~ 691 (891)
.++. ..+. ....+.+.++ |+.+..++ .+++..++.+++.+.|+ ..+.+..+. ..-
T Consensus 314 ~~~~----------~~t~----~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g 375 (452)
T 3n5m_A 314 FFRH----------INTF----GGNPAACALALKNLEIIENEN---LIERSAQMGSLLLEQLKEEIGEHPLVGDIR-GKG 375 (452)
T ss_dssp SCCC----------CCSS----TTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTTCTTEEEEE-ESS
T ss_pred Cccc----------cCCC----CCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-EEE
Confidence 1100 0111 1122333333 33333333 34444555555555554 444443332 222
Q ss_pred eEEEEEecCCc--chhh-hhhHHHHHHHHHhCCcEEEeecc--ccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 692 GLVCFRLRSEN--NLIA-DQNNRKLLEDINASGRLHMVPAS--QEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 692 ~iV~Fr~~~~~--~~~~-d~ln~~L~~~L~~~G~~~~s~s~--~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.++.|.+.+.. .... ......+.+.|.++|+++..... ......+ ++++..+|+++|+++++.|++++
T Consensus 376 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 449 (452)
T 3n5m_A 376 LLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAM 449 (452)
T ss_dssp SCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34445542210 0000 12345788888999987543321 1124556 88888899999999999998875
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00028 Score=80.45 Aligned_cols=154 Identities=13% Similarity=0.053 Sum_probs=83.4
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|.++++ |.++..+.+|+++.+++ +.+.+.. . .+ ..+. ....+.+++.+..+....-.+
T Consensus 289 pdi~t~s--K~l~~G~~iG~v~~~~~--~~~~~~~---~-~~---------~~t~----~~~~~~~aaa~aal~~~~~~~ 347 (451)
T 3oks_A 289 PDLIVTA--KGIAGGLPLSAVTGRAE--IMDSPHV---S-GL---------GGTY----GGNPIACAAALATIETIESEG 347 (451)
T ss_dssp CSEEEEC--GGGGTTSSCEEEEEEHH--HHTCSCT---T-SB---------CCSS----SSCHHHHHHHHHHHHHHHHTT
T ss_pred CCeeeeh--hhhhCCcceEEEEECHH--HHhhhcC---C-Cc---------CCCC----CCCHHHHHHHHHHHHHHhhhh
Confidence 4777665 99887778898887654 2111110 0 00 0111 112333434433332111123
Q ss_pred HHHHHHHHHHHHHHHhcc----CCCcEEeCCCceeEEEEEecCCc-chhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 662 YIRRHCELAKLFEGKVRR----DPRFEISNDVRLGLVCFRLRSEN-NLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~----~~~~eil~~~~~~iV~Fr~~~~~-~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
.+++..++.+++.+.|++ .+.+..+. ..-.++.|.+.... ...-......+.+.|.++|+++..+. .. ...+
T Consensus 348 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~-~~~i 424 (451)
T 3oks_A 348 LVARAQQIEKIMKDRLGRLQAEDDRIGDVR-GRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCG-TY-GNVV 424 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEEC-TT-SCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-EeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCC-CC-CCEE
Confidence 444455555566555543 44443321 22346667664310 00013356688899999998754332 22 2456
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++..+|+++|+++++.|++++
T Consensus 425 Ri~~~~~~t~e~i~~~l~~l~~~l 448 (451)
T 3oks_A 425 RFLPPLSIGDDLLNEGLDVLEEVL 448 (451)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 88888889999999999998876
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=5.5e-05 Score=85.31 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=108.0
Q ss_pred EEEecccchHHHHHHHH-H----cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------
Q psy852 508 MAYCSKEAHSCVEKAAM-M----AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-------- 571 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~-l----~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-------- 571 (891)
.|+++...|.+....+. + .|++++.+|.+ |+++|+++|++.+ ..+++.. ..|...
T Consensus 107 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~----~~v~~e~~~np~G~~~~l~~i~~l 177 (400)
T 3nmy_A 107 HVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT-----DPAAFKAAIRADT----KMVWIETPTNPMLKLVDIAAIAVI 177 (400)
T ss_dssp EEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT-----SHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC-----CHHHHHHHhccCC----CEEEEECCCCCCCeeecHHHHHHH
Confidence 57778888876655543 3 58888888875 8999999987532 1222222 223332
Q ss_pred hhhh-----hcCC-----------CCccEEEEcCcccCCccc-cc-E-EEEEeCCccchhhhccCCCccccCCCCCcccc
Q psy852 572 CYRK-----SQGI-----------EYADSFNVNVNKWLLTAF-DS-S-CLWVADRYKLTSALVVDPLYLQHGHEGAIDYR 632 (891)
Q Consensus 572 c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P~-g~-G-~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~ 632 (891)
|+++ +|.+ -.+|.+..+.||++++|. .. | ++++++++.. +.+.....+
T Consensus 178 a~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~-~~l~~~~~~------------ 244 (400)
T 3nmy_A 178 ARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELA-EQMAFLQNS------------ 244 (400)
T ss_dssp HHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHH-HHHHHHHHH------------
T ss_pred HHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHH-HHHHHHHHh------------
Confidence 4332 2221 248999999999999883 33 4 4554454322 222110000
Q ss_pred CCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-----------------eeEEE
Q psy852 633 HWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-----------------LGLVC 695 (891)
Q Consensus 633 ~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-----------------~~iV~ 695 (891)
.+-....+..|..++ +.+.+..++++..++++++.+.|++.|.++-+..|. -++++
T Consensus 245 -----~g~~~~~~~a~~~l~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~ 317 (400)
T 3nmy_A 245 -----IGGVQGPFDSFLALR--GLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVS 317 (400)
T ss_dssp -----HCCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEE
T ss_pred -----cCCCCCHHHHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEE
Confidence 011223455676665 566788889999999999999999998887553322 35999
Q ss_pred EEecCCcchhhhhhHHHHHHHHHh
Q psy852 696 FRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 696 Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
|.+++. .....++.+.|..
T Consensus 318 ~~l~~~-----~~~~~~~~~~l~~ 336 (400)
T 3nmy_A 318 IVLKGG-----FDAAKRFCEKTEL 336 (400)
T ss_dssp EEETTH-----HHHHHHHHHHCSS
T ss_pred EEeCCc-----HHHHHHHHHcCCc
Confidence 999642 1234455665543
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00021 Score=81.41 Aligned_cols=280 Identities=12% Similarity=0.040 Sum_probs=143.3
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++++++.+.+..... +|+ +++||+|+|..++.+++.....+. ...+.-+|.....-|-...-+..
T Consensus 96 ~~~la~~l~~~~~~~~~-~v~--~~~ggseA~~~al~~~~~~~~~~g----------~~~~~~vi~~~~~yhg~~~~~~~ 162 (459)
T 4a6r_A 96 VVELSSLLAEVTPAGFD-RVF--YTNSGSESVDTMIRMVRRYWDVQG----------KPEKKTLIGRWNGYHGSTIGGAS 162 (459)
T ss_dssp HHHHHHHHHHHSCTTCC-EEE--EESSHHHHHHHHHHHHHHHHHHTT----------CTTCCEEEEETTCCCCSSHHHHH
T ss_pred HHHHHHHHHHhCCCCCC-EEE--EeCchHHHHHHHHHHHHHHHHhcC----------CCCCCEEEEECCCcCCccHHHHh
Confidence 34566666666543222 555 788999999999999998654321 11123345555555543333332
Q ss_pred HcC------------ceEEEecCC-----CCCCcC--------HHHHHHHHHhhhhcCCccEEEE-e---cCCccc----
Q psy852 525 MAF------------VRLKILEPD-----DKNSLR--------GATLRQVMQQDETMGYIPFFVS-T---TLGTTS---- 571 (891)
Q Consensus 525 l~g------------v~v~~Vp~d-----~~G~mD--------~~~Le~aI~~d~~~g~ip~~Vv-a---taGTT~---- 571 (891)
+.+ ..+..+|.. .+. +| +++|+++|++.... .+.++++ . +.|...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~-~~~~vi~ep~~~~~G~~~~~~~ 240 (459)
T 4a6r_A 163 LGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGAD-KVAAFVGEPIQGAGGVIVPPAT 240 (459)
T ss_dssp HSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGG-GEEEEEECSSBTTTTCBCCCTT
T ss_pred hcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCC-CEEEEEECCccCCCCcccCCHH
Confidence 221 134445532 122 56 78888888752111 1222232 1 223222
Q ss_pred --------hhhh-----hc----CC-------------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCc
Q psy852 572 --------CYRK-----SQ----GI-------------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLY 620 (891)
Q Consensus 572 --------c~~~-----ld----Gi-------------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Y 620 (891)
|.+| +| |+ -..|.++++ |.++.. .++|+++.+++ +.+.+.....+
T Consensus 241 ~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~~~~--i~~~~~~~~~~ 316 (459)
T 4a6r_A 241 YWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGYLPIGAVFVGKR--VAEGLIAGGDF 316 (459)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEECHH--HHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehh--hhhcCCCCCccceeeCHH--HHHHhhcCCCc
Confidence 4331 11 11 124778775 987765 57888888554 22222110000
Q ss_pred cccCCCCCccccCCcccccccccchHHHHH---HHHHHHhhHHHHHH--HHHHHHHHHHHHhccCCCcEEeCCCceeEEE
Q psy852 621 LQHGHEGAIDYRHWGIPLSRRFRSLKLWFV---IRTYGLSGLQKYIR--RHCELAKLFEGKVRRDPRFEISNDVRLGLVC 695 (891)
Q Consensus 621 l~~~~e~~~~~~~~ti~~SRr~~aL~lW~~---L~~lG~~G~~~~i~--~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~ 695 (891)
. + ..+.. ...+.+.++ |+.+..+.+.+.++ ....+.+.|.+.|...+.+..+. +.-+++.
T Consensus 317 ~-~---------~~t~~----~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~g~~~~ 381 (459)
T 4a6r_A 317 N-H---------GFTYS----GHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVR-GVGMVQA 381 (459)
T ss_dssp H-H---------HHHHC----SCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEE-EETTEEE
T ss_pred c-c---------CCCCC----CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-EEEEEEE
Confidence 0 0 00111 112333333 33333344433333 22233333334445555444332 2334666
Q ss_pred EEecCCcch-----hhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 696 FRLRSENNL-----IADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 696 Fr~~~~~~~-----~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
|.+...... ........+.+.|.++|+++... + ..+ ++++..+|+++++++++.|++.+..+.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 382 FTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC----G-DHIVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp EEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE----T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccccccccchHHHHHHHHHHHHHCCeEEecC----C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 776532100 01223667888999999874432 2 456 888888999999999999998876444
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00022 Score=80.99 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=45.9
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+++.. ..+.+|+++-..+.+|.+-| +++|.++|++||++|++|.+++|+
T Consensus 187 d~~~le~~l~~~~---~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~ 247 (453)
T 2cy8_A 187 DIEGMREVFANHG---SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF 247 (453)
T ss_dssp CHHHHHHHHHHHG---GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CHHHHHHHHHhcC---CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc
Confidence 8999999997531 12456666666666898877 999999999999999999999764
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00043 Score=78.59 Aligned_cols=58 Identities=17% Similarity=0.105 Sum_probs=44.5
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeeccc-CccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGT-TSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gt-t~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
|+++|++.++... ..+.+|++.-.. +..|.+-| +++|+++|++||++|++|-++.|+.
T Consensus 196 d~~~le~~l~~~~---~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g 258 (448)
T 3dod_A 196 CLRELAQLLEEHH---EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFG 258 (448)
T ss_dssp HHHHHHHHHHHHG---GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred HHHHHHHHHHhCC---CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence 6899999997321 124566666655 67787766 9999999999999999999997643
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00079 Score=76.66 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=100.8
Q ss_pred ccccccCCC------CCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy852 18 PRFHAYFPS------GNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND 91 (891)
Q Consensus 18 p~~~~~~~~------~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~ 91 (891)
.+|+++..+ +-..|.+...+...+-.....+....+ .+...+..++|+++++.+... -+
T Consensus 61 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~~~--------~v----- 125 (451)
T 3oks_A 61 NRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTP--YEGYVAVCEQLNRLTPVRGDK--------RS----- 125 (451)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSC--CHHHHHHHHHHHHHSSCCSSE--------EE-----
T ss_pred CEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccC--CHHHHHHHHHHHHhCCcCCCC--------EE-----
Confidence 346665532 224677766665554322111211222 244556778889888633110 00
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcC--------
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF-------- 163 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~-------- 163 (891)
.+++||+.. +...+.++|...+ .+.+|.....-|-...-++.+.+
T Consensus 126 ---------------~~~~sGseA-~~~Alk~a~~~~g-----------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~ 178 (451)
T 3oks_A 126 ---------------ALFNSGSEA-VENAVKIARSHTH-----------KPAVVAFDHAYHGRTNLTMALTAKVMPYKDG 178 (451)
T ss_dssp ---------------EEESSHHHH-HHHHHHHHHHHHC-----------CCEEEEETTCCCCSSHHHHHHCCCCTTTTTT
T ss_pred ---------------EEeCcHHHH-HHHHHHHHHHhcC-----------CCeEEEEcCCcCCccHHHHHhcCCCcccccC
Confidence 146788764 4445556665321 12234444455654444443322
Q ss_pred -----CeEEEEecCCC-------------CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHH
Q psy852 164 -----VRLKILEPDDK-------------NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVA 221 (891)
Q Consensus 164 -----~~v~~V~~d~~-------------g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~ 221 (891)
..+..++.... +.-+++.+++.|++.. .+..+.+|++.-.+++.|.+-| +++|+++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~-~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~ 257 (451)
T 3oks_A 179 FGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQI-GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWC 257 (451)
T ss_dssp CCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHT-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred CCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhc-CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHH
Confidence 15677776521 1124566666665432 1233567777777778888877 99999999
Q ss_pred HHcCCceeeeccccCCc
Q psy852 222 KEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~~ 238 (891)
++||++|++|-+|.|+.
T Consensus 258 ~~~g~~lI~DEv~~g~g 274 (451)
T 3oks_A 258 RKNDVVFIADEVQTGFA 274 (451)
T ss_dssp HHTTCEEEEECTTTTTT
T ss_pred HHcCCEEEEEecccCCC
Confidence 99999999999997643
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00022 Score=81.60 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=50.2
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeec-ccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTL-GTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~-Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+..+..|+++|++.|++.. ..+.+|++.- .++++|.+-| +++|.++|++||++|++|-++.|+.
T Consensus 213 ~~~~~~d~~~le~~l~~~~---~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g 281 (457)
T 3tfu_A 213 RDYDPAYSAAFEAQLAQHA---GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFG 281 (457)
T ss_dssp SSCCHHHHHHHHHHHHHHG---GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred cccCHHHHHHHHHHHHhCC---CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCc
Confidence 3344579999999998531 1245666666 7888998877 9999999999999999999997643
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00016 Score=81.68 Aligned_cols=246 Identities=10% Similarity=0.026 Sum_probs=140.4
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce----------EEE
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR----------LKI 532 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~----------v~~ 532 (891)
+|+ +++|+++++..+ .+ ... +.-.|++..-.|.+...++...|.+ ++.
T Consensus 134 ~i~--~t~G~~~al~~~-~~----l~~---------------~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~ 191 (449)
T 3qgu_A 134 EIF--ISDGSKCDIARI-QM----MFG---------------SKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEY 191 (449)
T ss_dssp GEE--EESCHHHHHHHH-HH----HHC---------------SSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEE
T ss_pred HEE--EccCHHHHHHHH-HH----HhC---------------CCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEE
Confidence 566 678888887765 22 111 1224778888898888888877776 888
Q ss_pred ecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----------------------
Q psy852 533 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK----------------------- 575 (891)
Q Consensus 533 Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~----------------------- 575 (891)
+|.++++.++++ ++ +. .....++++. ..|+.. |.++
T Consensus 192 ~~~~~~~~~~~~-~~----~~--~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~ 264 (449)
T 3qgu_A 192 MVCNPDNHFFPD-LS----KA--KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTI 264 (449)
T ss_dssp EECCGGGTTCCC-GG----GC--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSG
T ss_pred EecccccCCcCC-hh----Hc--CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCH
Confidence 888765433322 11 10 1112223321 134432 3221
Q ss_pred --hcCCCCccEEEEcCcccCC-cccccEEEEEeCCccchh-hhccCCCccccCCCCCccccCCcccccccccchHHHHHH
Q psy852 576 --SQGIEYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTS-ALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVI 651 (891)
Q Consensus 576 --ldGi~~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L~~-~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L 651 (891)
+++....+-+..+++|+++ ....+|+++.+++. +.. .......+.. ....+.. ....+.++++.
T Consensus 265 ~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~a~~ 332 (449)
T 3qgu_A 265 YEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKAL-KYANGEPVHADWNR--------VMTTCFN---GASNIVQAGGL 332 (449)
T ss_dssp GGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTC-BCTTSCBHHHHHHH--------HHHHSCC---CCCHHHHHHHH
T ss_pred hhccCCCCcEEEEecchhhcCCccceeEEEecCHHH-HhhhhhhHHHHHHH--------HhhcccC---CCCHHHHHHHH
Confidence 1111234577889999997 44778998876542 110 0000000000 0000000 01123334444
Q ss_pred HHH---HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhC-CcEEEee
Q psy852 652 RTY---GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINAS-GRLHMVP 727 (891)
Q Consensus 652 ~~l---G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~ 727 (891)
..+ +.+.+.++.++..+++++|.+.|++. ++++..+.....+.+.+.+. ...++.+.|.++ |+++..+
T Consensus 333 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gI~v~pg 404 (449)
T 3qgu_A 333 ACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDAPYIWVGFPGK-------PSWDVFAEILERCNIVTTPG 404 (449)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEG
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCeeEEEEECCCC-------CHHHHHHHHHHHCCEEEecc
Confidence 433 34567788888899999999999887 77777555566777877522 346777777765 8775544
Q ss_pred ccc--cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 728 ASQ--EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 728 s~~--~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
... .+...+ +++. .++++|+++++.|++++
T Consensus 405 ~~f~~~~~~~iRis~~--~~~e~i~~~l~~l~~~~ 437 (449)
T 3qgu_A 405 SGYGPAGEGFVRASAF--GSRENILEAVRRFKEAY 437 (449)
T ss_dssp GGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred hHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 322 334566 8853 48999999999998776
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.3e-05 Score=84.51 Aligned_cols=243 Identities=9% Similarity=-0.052 Sum_probs=137.4
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC--CCCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~--d~~G~ 540 (891)
+|+ +++|+++++..++..... .. +.-.|++..-.|.+....+...|.+++.+|. ++++.
T Consensus 97 ~i~--~t~g~~~a~~~~~~~~~~--~~---------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (397)
T 3fsl_A 97 ATI--QTLGGSGALKVGADFLKR--YF---------------PESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNG 157 (397)
T ss_dssp EEE--EESHHHHHHHHHHHHHHH--HC---------------TTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTE
T ss_pred EEE--EcCCcHHHHHHHHHHHHh--cC---------------CCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCc
Confidence 455 788999999888643321 11 1124778888999998888888999999998 56899
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE----ecCCccc-----------hhhh-----hcC---------------------C
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS----TTLGTTS-----------CYRK-----SQG---------------------I 579 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~-----------c~~~-----ldG---------------------i 579 (891)
+|+++|++++++... ..-++++ +..|++. |.++ +|. .
T Consensus 158 ~d~~~l~~~l~~~~~--~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 235 (397)
T 3fsl_A 158 VRFNDLLATLKTLQA--GSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASA 235 (397)
T ss_dssp ECHHHHHHHHTTCCT--TCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHT
T ss_pred CcHHHHHHHHHhCCC--CCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhc
Confidence 999999999985311 1122222 3355553 3321 111 1
Q ss_pred CCccEEEEcCcccCCcc-cccEEEEEe--CCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-
Q psy852 580 EYADSFNVNVNKWLLTA-FDSSCLWVA--DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG- 655 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P-~g~G~llvR--~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG- 655 (891)
..-+-+..+.+|.++.| ..+|+++.. +...+.........+.+... .. ...+.+......+.
T Consensus 236 ~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----~~~~~~~~~~~~l~~ 301 (397)
T 3fsl_A 236 GLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNY---------SS-----PPNFGAQVVAAVLND 301 (397)
T ss_dssp TCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTT---------SS-----CCSHHHHHHHHHHTS
T ss_pred CCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhcc---------CC-----CCHHHHHHHHHHhcC
Confidence 11235556789988744 458888763 33222211111000000000 00 00122222222221
Q ss_pred -------HhhHHHHHHHHHHHHHHHHHHhccCC---CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE
Q psy852 656 -------LSGLQKYIRRHCELAKLFEGKVRRDP---RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHM 725 (891)
Q Consensus 656 -------~~G~~~~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~ 725 (891)
.+.+++..++..++++++.+.|++.+ ++++..+.....+...+ ..+.+...|.+.|+...
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~ 371 (397)
T 3fsl_A 302 EALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGL----------SAAQVDRLREEFGVYLI 371 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCC----------CHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCC----------CHHHHHHHHHhCCEEEC
Confidence 45567777788889999999998764 55544322222222222 12446666777887743
Q ss_pred eeccccCCeEEEEecCCCCHHHHHHHHHHHHHH
Q psy852 726 VPASQEQNDEVFELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 726 s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei 758 (891)
.+. .+++... ++++|+++++.|+++
T Consensus 372 ~g~-------Ris~~~~-~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 372 ASG-------RMCVAGL-NTANVQRVAKAFAAV 396 (397)
T ss_dssp TTC-------EEEGGGC-CTTTHHHHHHHHHHH
T ss_pred CCC-------eEEEEec-CHhhHHHHHHHHHhh
Confidence 221 4666544 446799999998764
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=6.8e-05 Score=83.56 Aligned_cols=84 Identities=13% Similarity=0.024 Sum_probs=61.7
Q ss_pred EEecCCCChHHHHHHHHcCCe-EEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVR-LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~-v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i 220 (891)
|++..-+|.+...++...|.+ ++.++.++++.++.+ +++ + ..+.+|+++..+|.+|.+-| +++|+++
T Consensus 121 Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-l~~-~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~ 191 (400)
T 3asa_A 121 VAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPE-FPE-D-------THIDILCLCSPNNPTGTVLNKDQLRAIVHY 191 (400)
T ss_dssp EEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCC-CCT-T-------CCCSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHcCCcceEecccchhcCcccC-hhh-c-------cCccEEEEeCCCCCCCCcCCHHHHHHHHHH
Confidence 666777898888887766777 999998865444322 221 1 12346666678999999987 5678889
Q ss_pred HHHcCCceeeeccccCC
Q psy852 221 AKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~ 237 (891)
|+++|+++++|.+|+++
T Consensus 192 ~~~~~~~li~De~~~~~ 208 (400)
T 3asa_A 192 AIEHEILILFDAAYSTF 208 (400)
T ss_dssp HHHTTCEEEEECTTGGG
T ss_pred HHHcCCEEEEEchhhhh
Confidence 99999999999999653
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.7e-05 Score=86.48 Aligned_cols=241 Identities=8% Similarity=-0.023 Sum_probs=133.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCCcCHHHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATL 546 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~mD~~~L 546 (891)
|+|+++++..++.+.+... + +.-.|+++.-.|.+....+...|.+++.+|.+ +++.+|+++|
T Consensus 102 t~G~~~al~~~~~~l~~~~-~---------------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 165 (401)
T 7aat_A 102 GISGTGSLRVGANFLQRFF-K---------------FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGA 165 (401)
T ss_dssp EEHHHHHHHHHHHHHHHHC-T---------------TCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHH
T ss_pred cCcchHHHHHHHHHHHHhc-c---------------CCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHH
Confidence 8899999998876654321 0 12247777888888888888889999999974 4799999999
Q ss_pred HHHHHhhhhcCCccEEEE----ecCCccc-----------hhhh--------------hcC-------------CCCccE
Q psy852 547 RQVMQQDETMGYIPFFVS----TTLGTTS-----------CYRK--------------SQG-------------IEYADS 584 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~Vv----ataGTT~-----------c~~~--------------ldG-------------i~~aDS 584 (891)
++.+++. ..+ .-++++ +..|++. |.++ ..+ ...-.-
T Consensus 166 ~~~l~~~-~~~-~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (401)
T 7aat_A 166 MEDISKI-PEK-SIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVV 243 (401)
T ss_dssp HHHHTTS-CTT-CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCE
T ss_pred HHHHHhC-CCC-cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEE
Confidence 9998762 212 223332 2356543 3321 011 011234
Q ss_pred EEEcCcccCCcc-cccEEEEEe--CCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH------
Q psy852 585 FNVNVNKWLLTA-FDSSCLWVA--DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG------ 655 (891)
Q Consensus 585 Is~d~HK~L~~P-~g~G~llvR--~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG------ 655 (891)
+..++||.++.| .-+|+++.. ++............+.+.. +... .++.++.+...+.
T Consensus 244 ~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~----~~~~~~~~~~~l~~~~~~~ 309 (401)
T 7aat_A 244 LSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPM----------YSNP----PMNGARIASLILNTPELRK 309 (401)
T ss_dssp EEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHH----------HSSC----CHHHHHHHHHHHHCHHHHH
T ss_pred EEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhc----------cCCC----ChHHHHHHHHHhCCHHHHH
Confidence 668899988755 337888863 2221100000000000000 0000 0122222322221
Q ss_pred --HhhHHHHHHHHHHHHHHHHHHhccCC---CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 656 --LSGLQKYIRRHCELAKLFEGKVRRDP---RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 656 --~~G~~~~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
.+.+.+..++..+++++|.+.|++.. ++++.. ++.+.+.| .+. ..+.+...+.+.|+.+. +.
T Consensus 310 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-~~~~~~~~--~~~-------~~~~~~~ll~~~gi~v~-~~-- 376 (401)
T 7aat_A 310 EWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIT-DQIGMFCF--TGL-------KPEQVERLTKEFSIYMT-KD-- 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HCCSSEEE--CCC-------CHHHHHHHHHHHCEECC-TT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceec-CCcceEEe--cCC-------CHHHHHHHHHhCCEecc-CC--
Confidence 33456666777888999999998752 344332 23333333 222 12334333466787632 11
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 EQNDEVFELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ~g~~~l~sv~~~tT~edId~li~~L~ei~ 759 (891)
..++++..++++ ||++++.|++++
T Consensus 377 ----~Ris~~~~~~~~-i~~~~~~l~~~~ 400 (401)
T 7aat_A 377 ----GRISVAGVASSN-VGYLAHAIHQVT 400 (401)
T ss_dssp ----CEEEGGGCCTTT-HHHHHHHHHHHH
T ss_pred ----CeEEeccCChhh-HHHHHHHHHHHh
Confidence 137777665555 999999998764
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00016 Score=82.61 Aligned_cols=155 Identities=8% Similarity=-0.044 Sum_probs=82.7
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|-++++ |.++..+..|+++.+++ +.+.+.. . .+ ..+.. ...+.+.+.+..+....-.+
T Consensus 287 pdi~t~s--K~~~~G~~~G~~~~~~~--i~~~~~~---~-~~---------~~t~~----~~~~~~aaa~aal~~~~~~~ 345 (453)
T 4ffc_A 287 PDIVTMA--KGIAGGMPLSAVTGRAE--LMDAVYA---G-GL---------GGTYG----GNPVTCAAAVAALGVMRELD 345 (453)
T ss_dssp CSEEEEC--GGGGTTSSCEEEEEEHH--HHTTSCT---T-SS---------CCSSS----SCHHHHHHHHHHHHHHHHTT
T ss_pred cchHhhh--hhhcCCcCeEEEEECHH--HHhhhcc---c-Cc---------CCCCC----cCHHHHHHHHHHHHHhhhhh
Confidence 4777765 98877677899887654 2111110 0 00 01111 12233333333332111123
Q ss_pred HHHHHHHHHHHHHHHhc----cCCCcEEeCCCceeEEEEEecCCc-chhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 662 YIRRHCELAKLFEGKVR----RDPRFEISNDVRLGLVCFRLRSEN-NLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~----~~~~~eil~~~~~~iV~Fr~~~~~-~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
.+++..++.+++.+.|+ ..+.+..+. ..-.++.|.+.... ...-......+.+.|.++|+++..+ ... ...+
T Consensus 346 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-~~~-~~~i 422 (453)
T 4ffc_A 346 LPARARAIEASVTSRLSALAEEVDIIGEVR-GRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTC-GTF-GNVI 422 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEE-CTT-SCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecC-CCC-CCEE
Confidence 34444455555555554 345443321 22346667664310 0011335678888999999874332 222 2456
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++++...|+++|+++++.|++++.
T Consensus 423 Ri~~~~~~t~e~i~~~l~~l~~~l~ 447 (453)
T 4ffc_A 423 RLLPPLVIGDDLLDEGITALSDIIR 447 (453)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHH
Confidence 888888899999999999998874
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00025 Score=79.76 Aligned_cols=154 Identities=10% Similarity=0.007 Sum_probs=80.1
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccC-CCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD-PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~-~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|.++++ |.+++++++|+++.+++ +.+.+... ..+. ..+. ....+.+.+.+..+....-+
T Consensus 263 ~di~t~s--K~~~~G~~iG~~~~~~~--i~~~~~~~~~~~~-----------~~t~----~~~~~a~aaa~aal~~~~~~ 323 (434)
T 3l44_A 263 PDLTALG--KVIGGGLPIGAYGGKKE--IMEQVAPLGPAYQ-----------AGTM----AGNPASMASGIACLEVLQQE 323 (434)
T ss_dssp CSEEEEE--GGGGTTSSCEEEEECHH--HHTTBTTTSSBCC-----------CCTT----TTCHHHHHHHHHHHHHHTST
T ss_pred CCeeehh--hhhcCCcCeeeEEEcHH--HHHhhccCCCccc-----------CCCC----CcCHHHHHHHHHHHHHHHcc
Confidence 4666665 88888888999877543 22211110 0000 0011 11223333333333211113
Q ss_pred HHHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecCCcch-------hhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 661 KYIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRSENNL-------IADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~~~~~-------~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
+.+++..++.+++.+.|++. +.+..+ +...+++.|.+...... .-......+.+.|.++|+++..+
T Consensus 324 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-- 400 (434)
T 3l44_A 324 GLYEKLDELGATLEKGILEQAAKHNIDITL-NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPS-- 400 (434)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSS--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeec--
Confidence 45556666777777776552 322221 22345777777432100 01223467888899999773322
Q ss_pred ccCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 730 QEQNDEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 730 ~~g~~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+...+ .++..+|++|++++++.|++++.
T Consensus 401 --~~~~~-rl~~~~t~e~i~~~l~~l~~~l~ 428 (434)
T 3l44_A 401 --KYEAW-FLTTEHTKEDIEYTIEAVGRAFA 428 (434)
T ss_dssp --TTCCE-ECCTTCCHHHHHHHHHHHHHHHH
T ss_pred --CCCcE-EEecccCHHHHHHHHHHHHHHHH
Confidence 11223 23457799999999999998874
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.3e-05 Score=86.73 Aligned_cols=239 Identities=9% Similarity=0.030 Sum_probs=136.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCCcCHHHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATL 546 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~mD~~~L 546 (891)
++|+++++..++.+++... +.-.|++..-+|.+...++...|.+++.+|.+ +++.+|+++|
T Consensus 97 ~~g~~~a~~~~~~~~~~~~-----------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 159 (394)
T 2ay1_A 97 TVGGTGALRQALELARMAN-----------------PDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGM 159 (394)
T ss_dssp EEHHHHHHHHHHHHHHHHC-----------------TTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHH
T ss_pred cCCchhHHHHHHHHHHhcC-----------------CCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHH
Confidence 7899999998887765311 01136677778888888888888899999985 6788999999
Q ss_pred HHHHHhhhhcCCccEEEEe----cCCccc-----------hhhh-----hcC---------------CC-----CccE-E
Q psy852 547 RQVMQQDETMGYIPFFVST----TLGTTS-----------CYRK-----SQG---------------IE-----YADS-F 585 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~Vva----taGTT~-----------c~~~-----ldG---------------i~-----~aDS-I 585 (891)
++++++.. ....++++. ..|+.. |.++ +|. +. ..|. +
T Consensus 160 ~~~l~~~~--~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (394)
T 2ay1_A 160 KADLAAAK--KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLI 237 (394)
T ss_dssp HHHHHTCC--TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEE
T ss_pred HHHHHhCC--CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEE
Confidence 99997631 111223322 245543 3321 111 10 1233 3
Q ss_pred EEcCcccCCcc-cccEEEEE--eCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-------
Q psy852 586 NVNVNKWLLTA-FDSSCLWV--ADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG------- 655 (891)
Q Consensus 586 s~d~HK~L~~P-~g~G~llv--R~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG------- 655 (891)
..+.||+++.| ..+|++++ ++++.+......-....+.. ++ . ...+.++++...+.
T Consensus 238 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~--~---~~~~~~~a~~~~l~~~~l~~~ 303 (394)
T 2ay1_A 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQT---------YS--F---PPFHGAKIVSTVLTTPELRAD 303 (394)
T ss_dssp EEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT---------TS--S---CCCHHHHHHHHHHHSHHHHHH
T ss_pred EEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhh---------cC--C---CChHHHHHHHHHhcChHHHHH
Confidence 55899999744 45799987 33322111110000000000 00 0 01233333333332
Q ss_pred -HhhHHHHHHHHHHHHHHHHHHhccCC---CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc
Q psy852 656 -LSGLQKYIRRHCELAKLFEGKVRRDP---RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE 731 (891)
Q Consensus 656 -~~G~~~~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~ 731 (891)
.+.+++..++..++++++.+.|++.. ++++..+.....+.+.+. .+.+...|.+.|+++. +
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~l~~~gi~v~-~---- 368 (394)
T 2ay1_A 304 WMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----------PEQVKRIKEEFGIYMV-G---- 368 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----------HHHHHHHHHHHCEECC-T----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC----------HHHHHHHHHhCCEEec-C----
Confidence 24566777777888899999888753 355543222333333331 1356666777887632 2
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHH
Q psy852 732 QNDEVFELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 732 g~~~l~sv~~~tT~edId~li~~L~ei 758 (891)
...++++ .+++++++++++.|+++
T Consensus 369 --~~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 369 --DSRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp --TCEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred --CCeEEee-cCCHhhHHHHHHHHHHc
Confidence 1137777 47899999999999875
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=1.8e-06 Score=96.09 Aligned_cols=248 Identities=9% Similarity=0.026 Sum_probs=142.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CC--C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DK--N 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~--G 539 (891)
+|+ +++|+++++..++.+.... .-.|++..-+|.+...++...|.+++.+|.+ ++ +
T Consensus 91 ~v~--~~~g~~~a~~~~~~~~~~~-------------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~ 149 (392)
T 3b1d_A 91 DIV--FVEGVVPAISIAIQAFTKE-------------------GEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLF 149 (392)
Confidence 455 7889999998887765221 1136777778888888888778888888884 33 4
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------C--------C----
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------G--------I---- 579 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------G--------i---- 579 (891)
.+|+++|++++++... ..+++. +..|+.. |.++ +| | +
T Consensus 150 ~~d~~~l~~~l~~~~~---~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 226 (392)
T 3b1d_A 150 QIDFEQLENDIVENDV---KLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDF 226 (392)
Confidence 6999999999973211 112222 2345442 3221 11 1 0
Q ss_pred CCccEEEEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HH
Q psy852 580 EYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GL 656 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~ 656 (891)
...+-+..+.+|+++ ....+|+++..++............+ ++.. ...+.++++...+ +.
T Consensus 227 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~--------------~~~~---~~~~~~~a~~~~l~~~~ 289 (392)
T 3b1d_A 227 KDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN--------------NHHE---VSSLGYIATETAYRYGK 289 (392)
Confidence 011234567899997 44578888887653332111110000 0000 0112222222222 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCceeEE-EEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc--
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVRLGLV-CFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE-- 731 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~~~iV-~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~-- 731 (891)
+.+++..++..++++++.+.|++ .+++++.. +..+.+ ++++... +.....+.+.|. +.|+.+..+....
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~i~~~~~-----~~~~~~l~~~l~~~~gi~v~~g~~f~~~ 363 (392)
T 3b1d_A 290 PWLVALKAVLEENIQFAVEYFAQEAPRLKVMK-PQGTYLIWLDFSDY-----GLTDDALFTLLHDQAKVILNRGSDYGSE 363 (392)
Confidence 45666777778888999999987 67887654 344443 4566421 113456778885 6788754433222
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+...+ +++.. ++++|+++++.|++.+
T Consensus 364 ~~~~iRi~~~~--~~e~i~~~l~~l~~~l 390 (392)
T 3b1d_A 364 GELHARLNIAA--PKSLVEEICKRIVCCL 390 (392)
Confidence 33455 77654 5788999998887654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00081 Score=75.53 Aligned_cols=60 Identities=10% Similarity=-0.058 Sum_probs=46.5
Q ss_pred cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 176 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 176 ~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
.+|+++|++.+++.. ...+.+|+++-.++.+|.+-| +++|+++|++||++|++|.+++|+
T Consensus 186 ~~d~~~le~~l~~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~ 249 (433)
T 1zod_A 186 LAELDYAFDLIDRQS--SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGV 249 (433)
T ss_dssp HHHHHHHHHHHHHHC--CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred HHHHHHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 468999999997521 112456666665677898766 999999999999999999999764
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00032 Score=79.06 Aligned_cols=65 Identities=14% Similarity=-0.008 Sum_probs=51.2
Q ss_pred eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 165 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 165 ~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
++..++. .|+++|++.+++.. ..+.+|+++-.++.+|.+-| +++|.++|++||++|++|.+++|+
T Consensus 181 ~~~~~~~-----~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~ 249 (434)
T 2epj_A 181 LTLVTPY-----NDVEALERVFAEYG---DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF 249 (434)
T ss_dssp TEEEEET-----TCHHHHHHHHHHHG---GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT
T ss_pred ceEecCC-----CCHHHHHHHHHhCC---CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce
Confidence 3555654 28999999997531 12567777777777999888 999999999999999999999764
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0006 Score=77.77 Aligned_cols=167 Identities=14% Similarity=0.046 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..|.++..+...+-......+...+ .+...+..++|+++++.+... -+ .+
T Consensus 81 ~~p~v~~A~~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~~~--------~v--------------------~~ 130 (453)
T 4ffc_A 81 SHPAVAAAIADQATHFTHTCFMVTP--YEQYVQVAELLNALTPGDHDK--------RT--------------------AL 130 (453)
T ss_dssp TCHHHHHHHHHHHHHCSCCTTTTSC--CHHHHHHHHHHHHHSSCSSCE--------EE--------------------EE
T ss_pred CCHHHHHHHHHHHHhccccccCcCC--CHHHHHHHHHHHHhCCCCCCc--------EE--------------------EE
Confidence 3566666655544221111111122 345556678889988643210 00 14
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcC-------------CeEEEEecC---
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF-------------VRLKILEPD--- 172 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~-------------~~v~~V~~d--- 172 (891)
++||+.. +...+.++|...+ .+.+|.....-|-...-++.+.+ ..+..++..
T Consensus 131 ~~sGseA-~~~alk~a~~~~g-----------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (453)
T 4ffc_A 131 FNSGAEA-VENAIKVARLATG-----------RPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPL 198 (453)
T ss_dssp ESSHHHH-HHHHHHHHHHHHC-----------CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTT
T ss_pred eCcHHHH-HHHHHHHHHHhcC-----------CCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccc
Confidence 6788765 4445556665321 12234455555655544443322 156677764
Q ss_pred --CCCcccHHHHHH---HHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 173 --DKNSLRGATLRQ---VMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 173 --~~g~id~~~L~~---~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+.|....+.++. .+++.. ....+.+|++.-.+++.|.+-| +++|+++|++||++|++|-+|.|+.
T Consensus 199 ~~~~g~~~~~~~~~~~~~l~~~i-~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 272 (453)
T 4ffc_A 199 RDEPGLTGEEAARRAISRIETQI-GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFA 272 (453)
T ss_dssp TSCTTCCHHHHHHHHHHHHHHHT-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred cCccccchHHHHHHHHHHHHHhc-CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCC
Confidence 223222233332 222211 1123567777777777788876 9999999999999999999997653
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00042 Score=78.93 Aligned_cols=71 Identities=11% Similarity=-0.062 Sum_probs=54.7
Q ss_pred eEEEEecCC--CC--------cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceee
Q psy852 165 RLKILEPDD--KN--------SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHV 230 (891)
Q Consensus 165 ~v~~V~~d~--~g--------~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHv 230 (891)
.+..+|.++ .. ..++++|++.+++. +..+.+|+++-.++++|.+-| +++|+++|++||+++++
T Consensus 194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 270 (449)
T 2cjg_A 194 PRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIF 270 (449)
T ss_dssp CEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 567777655 22 47888899988642 122567777777788998777 99999999999999999
Q ss_pred eccccCCc
Q psy852 231 DGAYAGSS 238 (891)
Q Consensus 231 DaA~GG~~ 238 (891)
|.+|.|+.
T Consensus 271 DEv~~g~g 278 (449)
T 2cjg_A 271 DEVQTGCG 278 (449)
T ss_dssp ECTTTTTT
T ss_pred eccccCCC
Confidence 99997643
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00028 Score=79.47 Aligned_cols=153 Identities=8% Similarity=-0.055 Sum_probs=85.0
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|.++++ |.+++...+|+++.+++ +.+.+....... + .. +-....+.+.+.+..+.... ++
T Consensus 261 ~di~t~s--K~~~~G~~iG~~~~~~~--~~~~~~~~~~~~-~---------~~----t~~~~~~a~aaa~aal~~~~-~~ 321 (429)
T 3k28_A 261 PDLTCLG--KVIGGGLPVGAYGGKAE--IMRQVAPSGPIY-Q---------AG----TLSGNPLAMAAGYETLVQLT-PE 321 (429)
T ss_dssp CSEEEEC--GGGGTTSCCEEEEECHH--HHTTBTTTSSBC-C---------CC----TTTTCHHHHHHHHHHHHTCC-HH
T ss_pred Cceehhh--hhhcCCCCeEEEEEcHH--HHhhhccCCCcc-c---------cC----CCCCChHHHHHHHHHHHHHH-HH
Confidence 4677665 98887788899887653 222221100000 0 00 11122344555555554322 66
Q ss_pred HHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecCCcch-------hhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 662 YIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRSENNL-------IADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~~~~~-------~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
.+++..++.+++.+.|++. +.+..+ +...+.+.|.+...... .-......+.+.|.++|+++.. .
T Consensus 322 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-~-- 397 (429)
T 3k28_A 322 SYVEFERKAEMLEAGLRKAAEKHGIPHHI-NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPP-S-- 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCS-S--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCEEE-EeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEec-C--
Confidence 7777788888888888663 322111 12335667776432100 0022346788889999977432 2
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+...+ + +..+|++|++++++.|++++.
T Consensus 398 -~~~~~r~--~~~~t~e~i~~~l~~l~~~l~ 425 (429)
T 3k28_A 398 -QFEGLFL--STVHSDADIEATIAAAEIAMS 425 (429)
T ss_dssp -TTSCBCC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEE--ECCCCHHHHHHHHHHHHHHHH
Confidence 12223 4 346799999999999998763
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=3.2e-06 Score=95.21 Aligned_cols=278 Identities=11% Similarity=0.043 Sum_probs=172.2
Q ss_pred HHHHHHHHH-HHHHhhccCCccccccCC-CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH
Q psy852 442 IRRHCELAK-LFEGKVRRDPRFEISNDV-RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 519 (891)
Q Consensus 442 i~~~lelAr-~l~~~L~~~~~~eVv~~i-tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv 519 (891)
..+.++.++ .+++.|...+..+|+ + |+|+|+++..++... .+ .| ..-.++.++..+|.++
T Consensus 70 ~~~~~~~ar~~la~ll~~~~~~evi--f~t~~~T~a~n~ai~~l----~~----------~g--d~v~~~~~~~~~~~~~ 131 (386)
T 3qm2_A 70 FIQVAEEAEQDFRDLLNIPSNYKVL--FCHGGGRGQFAGVPLNL----LG----------DK--TTADYVDAGYWAASAI 131 (386)
T ss_dssp ---CCHHHHHHHHHHHTCCTTEEEE--EEESCTTHHHHHHHHHH----CT----------TC--CEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEE--EEcCCchHHHHHHHHhc----cC----------CC--CeEEEEeCCHHHHHHH
Confidence 345555665 566666663345777 6 689999998887543 11 01 0112455666667555
Q ss_pred HHHHHHcCceEEEecCC--CCCC-cCHHHHHHHHHhhhhcCCccEEEEec--CCcc-c-----h---hhhhcCC------
Q psy852 520 EKAAMMAFVRLKILEPD--DKNS-LRGATLRQVMQQDETMGYIPFFVSTT--LGTT-S-----C---YRKSQGI------ 579 (891)
Q Consensus 520 ~Kaa~l~gv~v~~Vp~d--~~G~-mD~~~Le~aI~~d~~~g~ip~~Vvat--aGTT-~-----c---~~~ldGi------ 579 (891)
..+.+. | +++.||++ ++|. +++++++++|+++++ ..+++.++ .|+. . + .-++|++
T Consensus 132 ~~a~~~-G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~---lV~~~h~et~tG~~i~pi~~i~~g~~~~vDa~qs~g~~ 206 (386)
T 3qm2_A 132 KEAKKY-C-APQIIDAKITVDGKRAVKPMREWQLSDNAA---YLHYCPNETIDGIAIDETPDFGPEVVVTADFSSTILSA 206 (386)
T ss_dssp HHHTTT-S-EEEEEECEEEETTEEEECCGGGCCCCTTCS---CEEECSEETTTTEECCCCCCCCTTCCEEEECTTTTTSS
T ss_pred HHHHHh-C-CeEEEecCcccCCCCCCchHHHhhcCCCCc---EEEEECCcCCcCEecCchhhhcCCCEEEEEcccccCCC
Confidence 443333 5 89999998 7886 899888887776533 23333333 3774 3 2 1134543
Q ss_pred ----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccc----c-ccchHHHHH
Q psy852 580 ----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR----R-FRSLKLWFV 650 (891)
Q Consensus 580 ----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SR----r-~~aL~lW~~ 650 (891)
+..|-+.+++|||++ |.|+|++++|++.. ...-...+.++. +....-...| . ...+.+-.+
T Consensus 207 pidv~~~~~~~~s~hK~lG-P~G~g~l~v~~~~~-~~~~~~~p~~~~--------~~~~~~~~~~~gTp~v~~i~~l~~A 276 (386)
T 3qm2_A 207 PLDVSRYGVIYAGAQKNIG-PAGLTLVIVREDLL-GKAHESCPSILD--------YTVLNDNDSMFNTPPTFAWYLSGLV 276 (386)
T ss_dssp CCCGGGCSEEEEETTTTTC-CTTEEEEEEEGGGC-SCCCTTSCGGGC--------HHHHHHC-------CCSHHHHHHHH
T ss_pred CCCccccCEEEEecccccC-CCccEEEEECHHHH-hhhcccCCcHHH--------HHHHhhcCCCCCCCcHHHHHHHHHH
Confidence 223678899999996 99999999997731 111001111211 0000000111 1 123456667
Q ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--c-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe
Q psy852 651 IRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--R-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV 726 (891)
Q Consensus 651 L~~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s 726 (891)
++.+-.. |++++.++..+++++|.+.|++++-+....++ . .++|+|.+++. .....+...|.+.|+....
T Consensus 277 l~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~------~~~~~~~~~L~~~gI~~~~ 350 (386)
T 3qm2_A 277 FKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADN------TLDKVFLEESFAAGLHALK 350 (386)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSG------GGHHHHHHHHHHTTEECCB
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCc------cccHHHHHHHHHCCCEEeC
Confidence 7777777 89999999999999999999987422333222 2 36999999742 1235677778889987444
Q ss_pred eccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 727 PASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 727 ~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+-...+ .+ +|+++++|++|||+++++|+++.+
T Consensus 351 g~~~~~--~iRiS~~~~~t~edId~l~~~l~~~~~ 383 (386)
T 3qm2_A 351 GHRVVG--GMRASIYNAMPIEGVKALTDFMIDFER 383 (386)
T ss_dssp CCTTTC--SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCcC--eEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 333222 26 999999999999999999998763
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00012 Score=82.03 Aligned_cols=245 Identities=9% Similarity=0.003 Sum_probs=138.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC--CCCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~--d~~G~ 540 (891)
+|+ +|+|+++++..++..... .. +.-.|+++.-.|.+....+...|.+++.+|. ++++.
T Consensus 119 ~i~--~t~G~t~al~~~~~~~~~--~~---------------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (420)
T 4f4e_A 119 VTA--QALGGTGALKIGADFLRT--LN---------------PKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNG 179 (420)
T ss_dssp EEE--EEEHHHHHHHHHHHHHHH--HC---------------TTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTE
T ss_pred EEE--ECCccHHHHHHHHHHHHH--hC---------------CCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCc
Confidence 556 788999999888543221 11 1124778888899998888889999999998 45799
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------------------CCC
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------------------GIE 580 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------------------Gi~ 580 (891)
+|+++|+++|++... +...+++. +..|++. |.++ +| +..
T Consensus 180 ~d~~~l~~~l~~~~~-~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 258 (420)
T 4f4e_A 180 VNFDGMLAALNGYEP-GTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAAN 258 (420)
T ss_dssp ECHHHHHHHHTTCCT-TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCC-CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcC
Confidence 999999999975311 11222221 3356553 3321 11 112
Q ss_pred CccEEEEcCcccCCcc-cccEEEEEe--CCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--
Q psy852 581 YADSFNVNVNKWLLTA-FDSSCLWVA--DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-- 655 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P-~g~G~llvR--~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-- 655 (891)
.-+-+..+.+|.++.| ..+|++++. +++.+......-..+.+... .. ...+.++.+...+.
T Consensus 259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----~~~~~~~~~~~~l~~~ 324 (420)
T 4f4e_A 259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNY---------SN-----PPTHGGAIVAAVLASP 324 (420)
T ss_dssp CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTT---------SS-----CCSHHHHHHHHHHHCH
T ss_pred CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhccc---------CC-----CCHHHHHHHHHHhcCH
Confidence 2345667899998843 558888752 33222111110000000000 00 01122222222222
Q ss_pred ------HhhHHHHHHHHHHHHHHHHHHhccC---CCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe
Q psy852 656 ------LSGLQKYIRRHCELAKLFEGKVRRD---PRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV 726 (891)
Q Consensus 656 ------~~G~~~~i~~~~~lA~~L~~~L~~~---~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s 726 (891)
.+.++++.++..++++++.+.|++. +++++..+ ..+..+| .+. ..+.+...|.+.|+++..
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~--~~~-------~~~~~~~~l~~~gI~v~~ 394 (420)
T 4f4e_A 325 ELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINA-QRGMFSY--SGL-------TSAQVDRLREEFGIYAVS 394 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH-SCSSEEE--CCC-------CHHHHHHHHHHHCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECC-CccEEEE--eCC-------CHHHHHHHHHhCCEEecC
Confidence 2345677777888999999999886 35655432 2333322 221 123456667778876332
Q ss_pred eccccCCeEEEEecCCCCHHHHHHHHHHHHHHH
Q psy852 727 PASQEQNDEVFELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 727 ~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ + .+++... ++++|+++++.|++++
T Consensus 395 ~----~---Ris~~~~-~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 395 T----G---RICVAAL-NTRNLDVVANAIAAVL 419 (420)
T ss_dssp T----S---EEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred C----C---eEEEecC-CHHHHHHHHHHHHHHh
Confidence 1 1 3666533 5667999999998764
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00049 Score=78.44 Aligned_cols=219 Identities=9% Similarity=0.037 Sum_probs=126.9
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecc-cchHHHH---------
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSK-EAHSCVE--------- 520 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~-~aH~Sv~--------- 520 (891)
.+++.+.... .++.+.+++|+++|..++.+. .+ +.-.|+++. ..|....
T Consensus 81 ~lA~l~g~e~--alv~p~~~sGt~Ai~~al~al----l~---------------pGD~Vl~~~~~~y~~~~~~~g~~~~~ 139 (427)
T 3i16_A 81 VYARVFNTES--ALVRPHFVNGTHALGAALFGN----LR---------------PGNTMLSVCGEPYDTLHDVIGITENS 139 (427)
T ss_dssp HHHHHHTCSE--EEEETTCCSHHHHHHHHHHHH----CC---------------TTCEEEESSSSCCGGGHHHHTCSCCC
T ss_pred HHHHHhCCcc--eEEeCCCccHHHHHHHHHHHH----hC---------------CCCEEEEeCCCccHHHHHHHhccccc
Confidence 4555554422 244332678899988777652 10 112356665 5565444
Q ss_pred --HHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCC-------ccc--------hhh--h-----h
Q psy852 521 --KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG-------TTS--------CYR--K-----S 576 (891)
Q Consensus 521 --Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataG-------TT~--------c~~--~-----l 576 (891)
+.+...|++++.+|.+++|.+|+++|+++|++.. +...+++..+.| +.. |++ + +
T Consensus 140 ~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~--~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~liv 217 (427)
T 3i16_A 140 NMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDE--SITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFV 217 (427)
T ss_dssp SSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCT--TEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred hHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCC--CCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEE
Confidence 3344568899999999999999999999998310 112333333222 211 444 2 2
Q ss_pred c-----CC-------CCccEEEEcCcccCCccc--ccEEEEEeCCccchhhhcc--CCCccccCCCCCccccCCcccccc
Q psy852 577 Q-----GI-------EYADSFNVNVNKWLLTAF--DSSCLWVADRYKLTSALVV--DPLYLQHGHEGAIDYRHWGIPLSR 640 (891)
Q Consensus 577 d-----Gi-------~~aDSIs~d~HK~L~~P~--g~G~llvR~~~~L~~~l~~--~~~Yl~~~~e~~~~~~~~ti~~SR 640 (891)
| +. ..+|.++.++||+++++- ..|+++.+ ++.+. .+.. ....+ +...+
T Consensus 218 D~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~-~l~~~~~~~~~-------------g~~~~- 281 (427)
T 3i16_A 218 DNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIE-KTSYRLTVPGI-------------GGECG- 281 (427)
T ss_dssp ECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHH-HHHHHHSCTTT-------------GGGCC-
T ss_pred ECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEEC-HHHHH-HHHHhcccCcc-------------CccCC-
Confidence 2 22 248999999999998742 22666654 33322 2211 11110 10000
Q ss_pred cccchH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-----EEEEEecCCcchhhhhhHHHHH
Q psy852 641 RFRSLK-LWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-----LVCFRLRSENNLIADQNNRKLL 714 (891)
Q Consensus 641 r~~aL~-lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-----iV~Fr~~~~~~~~~d~ln~~L~ 714 (891)
+ .+. .|..++ |..-+..++++..++++++++.|++++ +++... ... +++|.+.+ ++...++.
T Consensus 282 ~--~~~~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~g-~~V~p~-~~~~~~~~i~~i~l~~------~~~~~~f~ 349 (427)
T 3i16_A 282 S--TFGVVRSMYQ--GLFLAPHISMEALKGAILCSRIMELAG-FEVMPK-YDEKRSDIIQSIKFND------KDKLIEFC 349 (427)
T ss_dssp C--CTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEESC-TTSCCSSSCEEEECSS------HHHHHHHH
T ss_pred c--cHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCC-CeecCC-CCCCCccEEEEEEECC------HHHHHHHH
Confidence 1 011 355544 455567888999999999999999875 476422 333 88899852 34566788
Q ss_pred HHHHhC
Q psy852 715 EDINAS 720 (891)
Q Consensus 715 ~~L~~~ 720 (891)
+.|+..
T Consensus 350 ~~l~~~ 355 (427)
T 3i16_A 350 KGIQTG 355 (427)
T ss_dssp HHHHHT
T ss_pred HHHhhc
Confidence 888775
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00059 Score=79.73 Aligned_cols=280 Identities=7% Similarity=0.025 Sum_probs=149.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC----CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD----DK 538 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d----~~ 538 (891)
+|+ +++|+++++..++.+...+. ...+.-.|+++.-.|.+...++.+.+.+++.+|++ .+
T Consensus 166 ~i~--~t~G~t~al~~~~~~l~~~~--------------l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 229 (533)
T 3f6t_A 166 DLF--PTEGGTAAIVYAFHSLAENH--------------LLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKND 229 (533)
T ss_dssp EEE--EEEHHHHHHHHHHHHHHHTT--------------SSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTT
T ss_pred eEE--EECCHHHHHHHHHHHhhhhh--------------ccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccC
Confidence 566 68899999988876532211 11223468889999999988888888888888874 46
Q ss_pred CCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hh-hh-----hcC---------------CCCcc
Q psy852 539 NSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CY-RK-----SQG---------------IEYAD 583 (891)
Q Consensus 539 G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~-~~-----ldG---------------i~~aD 583 (891)
+.+|+++|++++++.+ ..++++. ..|++. |. ++ +|. ....+
T Consensus 230 ~~~d~~~l~~~l~~~~----k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 305 (533)
T 3f6t_A 230 WEIEPNEIEKLKDPSI----KALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNT 305 (533)
T ss_dssp SEECHHHHHHHSCTTE----EEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGE
T ss_pred CCCCHHHHHHHhCCCC----eEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCE
Confidence 8999999999986532 1223322 245543 43 21 111 11234
Q ss_pred EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCC---------CccccCCCC-Ccc--------ccCCcccccccccc
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDP---------LYLQHGHEG-AID--------YRHWGIPLSRRFRS 644 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~---------~Yl~~~~e~-~~~--------~~~~ti~~SRr~~a 644 (891)
-+..+.+|.++.| .-+|+++.++...+.+.+..-+ .|-.-..++ ... ........+-....
T Consensus 306 i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~ 385 (533)
T 3f6t_A 306 MLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLST 385 (533)
T ss_dssp EEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCH
T ss_pred EEEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCCh
Confidence 7788899988844 3389998887744332221110 010000000 000 00000000000111
Q ss_pred hHHHH----HHHHH--------HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhh-----
Q psy852 645 LKLWF----VIRTY--------GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIA----- 706 (891)
Q Consensus 645 L~lW~----~L~~l--------G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~----- 706 (891)
..+.+ ++..+ ...-+++..+...+.+++|.+.|. . ++.+. .++.+ .+...+........
T Consensus 386 ~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~-~~~~g~~~~~~l~~~~~~~~g~~~~ 462 (533)
T 3f6t_A 386 PQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PKDET-DTNTHYYSLIDIYRLAEKIYGKEFR 462 (533)
T ss_dssp HHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCS-TTBCCSEEEEEHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-Ccccc-CCCceEEEEEehHhhhhhccchHHH
Confidence 22222 33333 123455566667778888999986 4 34433 33333 34444432100000
Q ss_pred -----hhhHHHHHHHH-HhCCcEEEeecccc-CCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy852 707 -----DQNNRKLLEDI-NASGRLHMVPASQE-QNDEV-FELQERKRKDDLAYKRSFFVRMLGLVCFRL 766 (891)
Q Consensus 707 -----d~ln~~L~~~L-~~~G~~~~s~s~~~-g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~~~l 766 (891)
+....++..+| .+.|+++..+..+. +...+ +++.. .++++|+++++.|.+++..+...+
T Consensus 463 ~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~~~~~ 529 (533)
T 3f6t_A 463 DYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQAN-LPTEDYALIGKQVLELLKEYYEEF 529 (533)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSS-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEee-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223444444 56788754333221 23456 88854 478899999999998886544333
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00036 Score=78.43 Aligned_cols=151 Identities=7% Similarity=0.012 Sum_probs=93.4
Q ss_pred ccEEEEcCcccCC-cccccEEEEEeCCccc------hhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH
Q psy852 582 ADSFNVNVNKWLL-TAFDSSCLWVADRYKL------TSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 582 aDSIs~d~HK~L~-~P~g~G~llvR~~~~L------~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l 654 (891)
.+-+..+++|.++ ....+|+++.++.... ...+.....+ ... ....+.+.+++..+
T Consensus 261 ~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~a~~~~l 323 (432)
T 3ei9_A 261 VAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICT--------------CFN---GASNISQAGALACL 323 (432)
T ss_dssp TEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHH--------------SCC---CSCHHHHHHHHHHS
T ss_pred eEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhcc--------------ccC---CCCHHHHHHHHHHH
Confidence 4567789999997 4466898888765310 1111100000 000 01123333333333
Q ss_pred ---HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeeccc
Q psy852 655 ---GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQ 730 (891)
Q Consensus 655 ---G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~ 730 (891)
+.+.+.+..++..++++++.+.|++. ++++..+.....+++.+.+. ...++.+.|.+ .|+++..+...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gv~v~~g~~f 395 (432)
T 3ei9_A 324 TPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFPNQ-------SSWDVFAEILEKTHVVTTPGSGF 395 (432)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGG
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECCCC-------CHHHHHHHHHHHCCEEEeCchHh
Confidence 34556778888889999999999887 78777655666788888632 34567777765 48875544432
Q ss_pred --cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 --EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 --~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+...+ +++ .+++++|+++++.|++.-
T Consensus 396 ~~~~~~~iRis~--~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 396 GPGGEGFVRVSA--FGHRENILEACRRFKQLY 425 (432)
T ss_dssp CGGGTTEEEEEC--CSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEe--cCCHHHHHHHHHHHHHHh
Confidence 234566 886 458999999999888654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0012 Score=74.17 Aligned_cols=264 Identities=11% Similarity=0.046 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
...++++.+.+.+.. +. +++ +++||+|+|..++..+|... + +.-+|.....-|-....++
T Consensus 94 ~~~~la~~l~~~~~~-~~-~v~--~~~sGsea~~~al~~a~~~~-~---------------~~~ii~~~~~yhg~~~~~~ 153 (429)
T 4e77_A 94 MEVKMAQLVTDLVPT-MD-MVR--MVNSGTEATMSAIRLARGYT-G---------------RDKIIKFEGCYHGHADCLL 153 (429)
T ss_dssp HHHHHHHHHHHHSTT-CS-EEE--EESSHHHHHHHHHHHHHHHH-C---------------CCEEEEETTCCCC------
T ss_pred HHHHHHHHHHhhCCC-CC-EEE--EeCcHHHHHHHHHHHHHHhh-C---------------CCEEEEEcCccCCCChhhh
Confidence 445667777776652 22 455 78899999999999887532 0 1223444444554443222
Q ss_pred HHcC-------------c------eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----CCccc---------
Q psy852 524 MMAF-------------V------RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----LGTTS--------- 571 (891)
Q Consensus 524 ~l~g-------------v------~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~--------- 571 (891)
...+ + .+..+|.+ |+++|+++|++... .+.++++.. .|...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~--~~~~vi~ep~~~~~g~~~~~~~~l~~l 226 (429)
T 4e77_A 154 VKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQYPQ--EVACIIVEPVAGNMNCIPPLPEFLPGL 226 (429)
T ss_dssp ------------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHSTT--TEEEEEECSSBCTTSCBCCCTTHHHHH
T ss_pred hhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhcCC--CEEEEEECCccCCCCCcCCCHHHHHHH
Confidence 1111 0 12222221 78899988875311 122233221 22221
Q ss_pred ---hhhh-----hcC----C------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccC-CCccccCCC
Q psy852 572 ---CYRK-----SQG----I------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD-PLYLQHGHE 626 (891)
Q Consensus 572 ---c~~~-----ldG----i------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~-~~Yl~~~~e 626 (891)
|.++ +|. + -..|.++++ |.+++.++.|+++.+++ +.+.+... ..+..
T Consensus 227 ~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~~~--~~~~l~~~~~~~~~---- 298 (429)
T 4e77_A 227 RALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLTCLG--KIIGGGMPVGAFGGRRE--VMNALAPTGPVYQA---- 298 (429)
T ss_dssp HHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEEEEE--GGGGTTSCCEEEEECHH--HHTTBTTTSSBCC-----
T ss_pred HHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCeeeec--ccccCCCCeEEEEECHH--HHHHhccCCCcccc----
Confidence 3321 111 0 113766665 98887778898877543 22211110 00000
Q ss_pred CCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecCCc
Q psy852 627 GAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRSEN 702 (891)
Q Consensus 627 ~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~~~ 702 (891)
..+ ....+.+.+.+..+....-.+.+++..++.+++.+.|++. +.... .+...+++.|.+.+..
T Consensus 299 -----~t~------~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~g~~~~~~~~~~~ 366 (429)
T 4e77_A 299 -----GTL------SGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLV-VNHVGGMFGLFFTNAD 366 (429)
T ss_dssp ------CC------CCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEETTEEEEECCSSS
T ss_pred -----CCC------CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceE-EEEeeeEEEEEEccCc
Confidence 001 1122333333333321111344555666666666666542 22111 1123457777775431
Q ss_pred c-h-------hhhhhHHHHHHHHHhCCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHH
Q psy852 703 N-L-------IADQNNRKLLEDINASGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 703 ~-~-------~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~ 759 (891)
. . .-......+.+.|.++|+++..+. ... +.++..+|++|++++++.|++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~-~~~~~~~t~e~i~~~l~~l~~~l 426 (429)
T 4e77_A 367 TVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA----FEA-GFMSLAHSNEDIQKTVNAARRCF 426 (429)
T ss_dssp CCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST----TSC-EECCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHCCeEEeecC----CCC-EEEeccCCHHHHHHHHHHHHHHH
Confidence 0 0 001234678889999998743221 111 34456789999999999999876
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00027 Score=78.71 Aligned_cols=245 Identities=11% Similarity=0.040 Sum_probs=136.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce-EEEecCC--CCCCcCHHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR-LKILEPD--DKNSLRGAT 545 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~-v~~Vp~d--~~G~mD~~~ 545 (891)
++|+++++..++..++.. .. |.....-.|++..-+|.+...++...|.+ ++.+|.+ .++.+|+++
T Consensus 105 t~gg~~a~~~~~~~~~~~--~~----------g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLARW--YN----------GTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp EEHHHHHHHHHHHHHHHH--SS----------SSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHH
T ss_pred CCCcHHHHHHHHHHHHHh--Cc----------CcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHH
Confidence 889999999886544321 10 00000024677777888888888888888 9999984 668899999
Q ss_pred HHHHHHhhhhcCCccEEEEe----cCCccc-----------hhhh-----h---------cC-------CC----Ccc--
Q psy852 546 LRQVMQQDETMGYIPFFVST----TLGTTS-----------CYRK-----S---------QG-------IE----YAD-- 583 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vva----taGTT~-----------c~~~-----l---------dG-------i~----~aD-- 583 (891)
|++++++.. ....++++. ..|+.. |.++ + .| +. ..|
T Consensus 173 l~~~l~~~~--~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (412)
T 1ajs_A 173 FLSDLENAP--EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFEL 250 (412)
T ss_dssp HHHHHHHSC--TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCE
T ss_pred HHHHHHhCC--CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcE
Confidence 999997631 112233222 245542 3321 1 11 10 123
Q ss_pred EEEEcCcccCCcc-cccEEEEEe--CCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-----
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWVA--DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG----- 655 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llvR--~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG----- 655 (891)
-+..+.||.++.| ..+|++++. +++.+......-..+... +... ...+.+++....+.
T Consensus 251 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---~~~~~~~a~~~~l~~~~~~ 316 (412)
T 1ajs_A 251 FCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRV-----------TWSN---PPAQGARIVARTLSDPELF 316 (412)
T ss_dssp EEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT-----------TTSS---CCSHHHHHHHHHHHSHHHH
T ss_pred EEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhc-----------ccCC---CChHHHHHHHHHHcCcchh
Confidence 5578999987752 347999883 433211111000000000 0000 01223333333332
Q ss_pred ---HhhHHHHHHHHHHHHHHHHHHhccCC---CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 656 ---LSGLQKYIRRHCELAKLFEGKVRRDP---RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 656 ---~~G~~~~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
.+.+++..++..++++++.+.|++.. ++++.. +..+...|. +. + .+.+...|.+.|+++. +.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~--~~-----~--~~~~~~~l~~~gv~v~-~~- 384 (412)
T 1ajs_A 317 HEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHIT-DQIGMFSFT--GL-----N--PKQVEYLINQKHIYLL-PS- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHH-HCCSSEEEC--CC-----C--HHHHHHHHHTTCEECC-TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEc-CCCceEEEe--CC-----C--HHHHHHHHHhCCEEec-CC-
Confidence 23567777788889999999998864 465543 233333321 21 1 2344555667887632 21
Q ss_pred ccCCeEEEEecCCCCHHHHHHHHHHHHHHH
Q psy852 730 QEQNDEVFELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 730 ~~g~~~l~sv~~~tT~edId~li~~L~ei~ 759 (891)
..++++. +++++++++++.|++++
T Consensus 385 -----~Ris~~~-~~~~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 385 -----GRINMCG-LTTKNLDYVATSIHEAV 408 (412)
T ss_dssp -----SEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred -----cEEEeee-CCHHHHHHHHHHHHHHH
Confidence 1377763 48999999999998876
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.001 Score=76.39 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=74.2
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCC-----------eEEEEecCC---
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV-----------RLKILEPDD--- 173 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~-----------~v~~V~~d~--- 173 (891)
++.||++. +...+.++|..... .|.-..+-+|.....=|-+..-++.+++. .+..++...
T Consensus 121 ~~~sGseA-~~~aik~a~~~~~~-----~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~ 194 (472)
T 3hmu_A 121 FAGGGSEA-NDTNIRMVRTYWQN-----KGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWA 194 (472)
T ss_dssp EESSHHHH-HHHHHHHHHHHHHH-----TTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHH
T ss_pred EeCCHHHH-HHHHHHHHHHHHHh-----cCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCcccc
Confidence 45688754 55555666653110 01101223444444556554444433321 455666422
Q ss_pred --CCccc--------HHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 174 --KNSLR--------GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 174 --~g~id--------~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
++ +| +++|++.|++.. ...+.+|++.-.++..|.+-| +++|.++|+++|++|.+|-++.|+.
T Consensus 195 ~~~~-~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg 270 (472)
T 3hmu_A 195 EGGD-MDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFG 270 (472)
T ss_dssp HCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred CCcc-cCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCc
Confidence 22 34 788888887421 122567777777788899988 9999999999999999999997754
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.64 E-value=8.6e-05 Score=80.28 Aligned_cols=273 Identities=12% Similarity=0.069 Sum_probs=171.2
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH--HHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE--KAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~--Kaa~ 524 (891)
++.+.+++.+...+. +++ +++|+++++..++.+... +.-.|+++..+|++.. +.+.
T Consensus 38 ~l~~~la~~~g~~~~-~i~--~~~g~t~a~~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~ 95 (352)
T 1iug_A 38 KARGLLREAFRTEGE-VLI--LTGSGTLAMEALVKNLFA-------------------PGERVLVPVYGKFSERFYEIAL 95 (352)
T ss_dssp HHHHHHHHHHTCSSE-EEE--EESCHHHHHHHHHHHHCC-------------------TTCEEEEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCc-eEE--EcCchHHHHHHHHHhccC-------------------CCCeEEEEeCCchhHHHHHHHH
Confidence 344455555554332 455 678999999988876521 1125888888898865 3334
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-------hcCC-------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-------SQGI------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-------ldGi------- 579 (891)
..|.+++.+|.+.++.+|+++|++ + +...++++ +..|+.. |+++ +|++
T Consensus 96 ~~g~~~~~v~~~~~~~~d~~~l~~---~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~ 168 (352)
T 1iug_A 96 EAGLVVERLDYPYGDTPRPEDVAK---E----GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGE 168 (352)
T ss_dssp HTTCEEEEEECCTTCCCCTTTSCC---S----SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBC
T ss_pred HcCCceEEEeCCCCCCCCHHHHhc---c----CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcc
Confidence 468899999999889999998876 2 11122222 2235543 4443 2321
Q ss_pred ---C--CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCcc-ccCCccccccc-ccchHHHHHHH
Q psy852 580 ---E--YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAID-YRHWGIPLSRR-FRSLKLWFVIR 652 (891)
Q Consensus 580 ---~--~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~-~~~~ti~~SRr-~~aL~lW~~L~ 652 (891)
. .+|.+++++|||+++|.|+|+++++++. + +.+.....|+.-. .... .......++-. .....+..+++
T Consensus 169 ~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~-~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~al~ 244 (352)
T 1iug_A 169 VALEAMGVDAAASGSQKGLMCPPGLGFVALSPRA-L-ERLKPRGYYLDLA--RELKAQKEGESAWTPAINLVLAVAAVLE 244 (352)
T ss_dssp CCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHH-H-HTCCCCSSTTCHH--HHHHHHTTTCCSSCCCHHHHHHHHHHHH
T ss_pred eeccccCeeEEEecCcccccCCCceeEEEECHHH-H-HHhhCCCceeeHH--HHHhhcccCCCCCCCCHHHHHHHHHHHH
Confidence 1 3799999999999999999999987652 1 1111100010000 0000 00000001111 11123445555
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc
Q psy852 653 TYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE 731 (891)
Q Consensus 653 ~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~ 731 (891)
.+... +++..++..++++++.+.|++. +++++.+. ..++++|++++. ....++.+.|.++|+.+..+....
T Consensus 245 ~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~~~~~~ 316 (352)
T 1iug_A 245 EVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEG------VPYARVKEAFAQRGAVIAGGQGPL 316 (352)
T ss_dssp HHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTT------CCHHHHHHHHHTTTEECEECCGGG
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCC------CCHHHHHHHHHHCCEEEEeCCCcc
Confidence 54444 8888899999999999999987 88887654 457888988521 134678889988998755444333
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+...+ ++++..+|++|++++++.|+++..
T Consensus 317 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 346 (352)
T 1iug_A 317 KGKVFRLSLMGAYDRYEALGVAGMFREVLE 346 (352)
T ss_dssp TTTEEEECCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHHHH
Confidence 44567 999988999999999999998763
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00031 Score=78.93 Aligned_cols=155 Identities=8% Similarity=-0.056 Sum_probs=78.8
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|.++++ |.+++-+..|+++.+++ +.+.+.....+.. ..+. ....+.+.+.+..+....-++
T Consensus 260 ~di~t~s--K~~~~G~~~G~~~~~~~--~~~~~~~~~~~~~----------~~t~----~~~~~~~aa~~aal~~~~~~~ 321 (427)
T 3fq8_A 260 PDLTTLG--KIIGGGLPVGAYGGKRE--IMQLVAPAGPMYQ----------AGTL----SGNPLAMTAGIKTLELLRQPG 321 (427)
T ss_dssp CSEEEEC--GGGGTTSSCEEEEECHH--HHTTBTTTSSBCC----------CCTT----TTCHHHHHHHHHHHHHHTSTT
T ss_pred CChhhhh--hhhhCCcceEEEEEcHH--HHHhhccCCCccc----------cCCC----CcCHHHHHHHHHHHHHHHhcC
Confidence 4777776 98886566898877543 2222211000000 0011 112233333333332111134
Q ss_pred HHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecCCcch-------hhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 662 YIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRSENNL-------IADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~~~~~-------~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
..++..++.+++.+.|++. +..... +....++.|.+...... .-......+.+.|.++|+++..+..
T Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~- 399 (427)
T 3fq8_A 322 TYEYLDQITKRLSDGLLAIAQETGHAACG-GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF- 399 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEE-EEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC-
Confidence 4555566666666666542 211111 12234677776532100 0122346788889999987432211
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 EQNDEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 ~g~~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
. .++++..+|++||+++++.|++++.
T Consensus 400 ---~-r~~~~~~~t~e~i~~~l~~l~~~l~ 425 (427)
T 3fq8_A 400 ---E-AGFTSLAHTEEDIDATLAAARTVMS 425 (427)
T ss_dssp ---S-CEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ---C-CEEeeCcCCHHHHHHHHHHHHHHHH
Confidence 0 1555667899999999999998763
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00017 Score=79.64 Aligned_cols=236 Identities=10% Similarity=0.025 Sum_probs=135.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCCcCHHHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATL 546 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~mD~~~L 546 (891)
++|+++++..++.+++.. . +.-.|++..-+|.+...++...|.+++.+|.+ +++.+|+++|
T Consensus 100 ~~g~~~a~~~~~~~~~~~--~---------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 162 (396)
T 2q7w_A 100 TPGGTGALRVAADFLAKN--T---------------SVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDAL 162 (396)
T ss_dssp ESHHHHHHHHHHHHHHHH--S---------------CCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHH
T ss_pred cccchhhHHHHHHHHHHh--C---------------CCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHH
Confidence 789999999888665421 0 11246777778888888888889999999985 6788999999
Q ss_pred HHHHHhhhhcCCccEEEEe----cCCccc-----------hhhh-----hcC---------------C------CCccEE
Q psy852 547 RQVMQQDETMGYIPFFVST----TLGTTS-----------CYRK-----SQG---------------I------EYADSF 585 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~Vva----taGTT~-----------c~~~-----ldG---------------i------~~aDSI 585 (891)
++++++... ...++++. ..|++. |.++ +|. + ..-+-+
T Consensus 163 ~~~l~~~~~--~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (396)
T 2q7w_A 163 INSLNEAQA--GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 240 (396)
T ss_dssp HHHHTTCCT--TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCC--CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEE
Confidence 999975311 12223322 245543 3321 111 0 112345
Q ss_pred EEcCcccCCcc-cccEEEEE--eCCc---cchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH----
Q psy852 586 NVNVNKWLLTA-FDSSCLWV--ADRY---KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG---- 655 (891)
Q Consensus 586 s~d~HK~L~~P-~g~G~llv--R~~~---~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG---- 655 (891)
..+.||.++.| ..+|++++ .+++ .+.+.+.. +.+. .+. . ...+.++++...+.
T Consensus 241 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~---~~~~---------~~~--~---~~~~~~~a~~~~l~~~~l 303 (396)
T 2q7w_A 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKA---AIRA---------NYS--N---PPAHGASVVATILSNDAL 303 (396)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHH---HHHT---------TTS--S---CCHHHHHHHHHHHTSHHH
T ss_pred EEeccccccccccccceEEEEcCCHHHHHHHHHHHHH---HHhh---------ccC--C---CCcHHHHHHHHHhcChhh
Confidence 77899988743 34799887 2332 12211110 0000 000 0 01233333434332
Q ss_pred ----HhhHHHHHHHHHHHHHHHHHHhccCC---CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 656 ----LSGLQKYIRRHCELAKLFEGKVRRDP---RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 656 ----~~G~~~~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
.+.+++..++..++++++.+.|++.. ++++.. +..+.+.|- +. + .+.+...|.+.|+++. +
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~--~~-----~--~~~~~~~l~~~gv~v~-~- 371 (396)
T 2q7w_A 304 RAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFII-KQNGMFSFS--GL-----T--KEQVLRLREEFGVYAV-A- 371 (396)
T ss_dssp HHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHH-HCCSSEEEC--CC-----C--HHHHHHHHHHHCEECC-T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCCceEEEe--cC-----C--HHHHHHHHHhcCeeec-C-
Confidence 23556666677888999999998864 355543 233333221 11 1 1345566677887632 2
Q ss_pred cccCCeEEEEecCCCCHHHHHHHHHHHHHH
Q psy852 729 SQEQNDEVFELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 729 ~~~g~~~l~sv~~~tT~edId~li~~L~ei 758 (891)
...++++.. |+++++++++.|+++
T Consensus 372 -----~~Ris~~~~-~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 372 -----SGRVNVAGM-TPDNMAPLCEAIVAV 395 (396)
T ss_dssp -----TCEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred -----CceEEEeec-CHHHHHHHHHHHHhc
Confidence 123777643 899999999998764
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00028 Score=78.23 Aligned_cols=284 Identities=11% Similarity=0.045 Sum_probs=181.6
Q ss_pred HHHHHHHHHHhhcc-CCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH----H
Q psy852 445 HCELAKLFEGKVRR-DPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC----V 519 (891)
Q Consensus 445 ~lelAr~l~~~L~~-~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S----v 519 (891)
..++.+.+++.+.. .+. +++ +++|+++++..++.+++.... .+...|+++..+|++ +
T Consensus 74 ~~~l~~~la~~~~~~~~~-~v~--~~~g~t~a~~~~~~~~~~~~~---------------~~gd~Vl~~~~~~~~~~~~~ 135 (420)
T 1t3i_A 74 YEAVRNKVAKFINARSPR-EIV--YTRNATEAINLVAYSWGMNNL---------------KAGDEIITTVMEHHSNLVPW 135 (420)
T ss_dssp HHHHHHHHHHHTTCSCGG-GEE--EESSHHHHHHHHHHHTHHHHC---------------CTTCEEEEETTCCGGGTHHH
T ss_pred HHHHHHHHHHHcCCCCCC-eEE--EcCChHHHHHHHHHHhhhccc---------------CCCCEEEECcchhHHHHHHH
Confidence 34455577777765 233 555 678999999999988753211 012357788888887 4
Q ss_pred HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc--------hhhh-----hcCC----
Q psy852 520 EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS--------CYRK-----SQGI---- 579 (891)
Q Consensus 520 ~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c~~~-----ldGi---- 579 (891)
...+...|.+++.+|.++++.+|+++|+++|++++ ..++++.. .|... |+++ +|++
T Consensus 136 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~----~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~ 211 (420)
T 1t3i_A 136 QMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKT----KLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAP 211 (420)
T ss_dssp HHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTE----EEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred HHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCc----eEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccC
Confidence 56666778899999999999999999999997532 12223222 35443 4431 2221
Q ss_pred --C------CccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCcc--ccCCCCC--ccccCCccc-cccc-ccc
Q psy852 580 --E------YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYL--QHGHEGA--IDYRHWGIP-LSRR-FRS 644 (891)
Q Consensus 580 --~------~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl--~~~~e~~--~~~~~~ti~-~SRr-~~a 644 (891)
. .+|.+++++|| +++|.|+|+++++++ +.+.+.. ...+. ....... +......+. ++.. ...
T Consensus 212 ~~~~~~~~~~~di~~~s~sK-~~~~~g~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (420)
T 1t3i_A 212 HYPLDVQLIDCDWLVASGHK-MCAPTGIGFLYGKEE--ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEA 288 (420)
T ss_dssp TSCCCHHHHTCSEEEEEGGG-TTSCTTCEEEEECHH--HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHH
T ss_pred CccCchhhcCCCEEEEehhh-hcCCCceEEEEEchH--HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHH
Confidence 1 37999999999 556888999988753 2222211 11100 0000000 000000111 1111 122
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 645 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 645 L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+.++.+++.+...++.+..++..++++++.+.|++.++++++.+. ..++++|.+++. ...++.+.|.+
T Consensus 289 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~ 361 (420)
T 1t3i_A 289 IALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL-------HASDVATMVDQ 361 (420)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB-------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCC-------CHHHHHHHHHH
Confidence 344446777776788899999999999999999998899988764 378899987532 34567888888
Q ss_pred CCcEEEeecc-------ccC-CeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 720 SGRLHMVPAS-------QEQ-NDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 720 ~G~~~~s~s~-------~~g-~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.|+.+..+.. ..+ ...+ ++++..++++|+++++++|+++.+
T Consensus 362 ~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 411 (420)
T 1t3i_A 362 DGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR 411 (420)
T ss_dssp TTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 9987543321 112 4456 999988999999999999998874
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00049 Score=77.97 Aligned_cols=220 Identities=7% Similarity=-0.031 Sum_probs=126.5
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecc-cchHHHHHH-------
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSK-EAHSCVEKA------- 522 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~-~aH~Sv~Ka------- 522 (891)
.+++.+.. +. .++.+.+++|+++|..++.+.- + +.-.|+++. ..|......
T Consensus 67 ~lA~l~g~-e~-alv~p~~~sGt~Ai~~al~all----~---------------~GD~Vl~~~~~~y~~~~~~~~~~g~~ 125 (409)
T 3jzl_A 67 VYATVFKT-EA-ALVRPQIISGTHAISTVLFGIL----R---------------PDDELLYITGQPYDTLEEIVGIRKQG 125 (409)
T ss_dssp HHHHHHTC-SE-EEEETTSCSHHHHHHHHHHHHC----C---------------TTCEEEECSSSCCTTHHHHHTSSSSS
T ss_pred HHHHHhCC-Cc-EEEECCCccHHHHHHHHHHHhc----C---------------CCCEEEEeCCCCcHhHHHHHhcccch
Confidence 44445544 22 2332226788999887776531 0 112466665 666666543
Q ss_pred ---HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC-------Cccc--------hhh--h-----hc
Q psy852 523 ---AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL-------GTTS--------CYR--K-----SQ 577 (891)
Q Consensus 523 ---a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata-------GTT~--------c~~--~-----ld 577 (891)
+...|++++.+|.+++|.+|+++|+++|++.+ ..+++..+. |+.. |++ + +|
T Consensus 126 ~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~t----klV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD 201 (409)
T 3jzl_A 126 QGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKT----KMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVD 201 (409)
T ss_dssp SSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTE----EEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCC----eEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEe
Confidence 34468899999999999999999999997532 223333322 2222 444 2 22
Q ss_pred C-----C-------CCccEEEEcCcccCCcccc-c-EEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccc
Q psy852 578 G-----I-------EYADSFNVNVNKWLLTAFD-S-SCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 578 G-----i-------~~aDSIs~d~HK~L~~P~g-~-G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
. + ..+|.+..++||+++++.. . |+++. +++.+..... ....++.. ..+. ..
T Consensus 202 ~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g~---------~~g~----~~ 267 (409)
T 3jzl_A 202 NCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAG-KEALVDLCGYRLTTPGIGR---------EAGA----SL 267 (409)
T ss_dssp CTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTGG---------GCCC----CT
T ss_pred CCcccccccCCccccCCeEEEECccccCCccCCceEEEEEe-CHHHHHHHHHHhccccccc---------cccc----cH
Confidence 1 1 2379999999999987642 2 55554 4443322211 11111110 0000 00
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-----EEEEEecCCcchhhhhhHHHHHHHH
Q psy852 643 RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-----LVCFRLRSENNLIADQNNRKLLEDI 717 (891)
Q Consensus 643 ~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-----iV~Fr~~~~~~~~~d~ln~~L~~~L 717 (891)
. ..|..++ |..-+..++++..++++++.+.|++++ +++... ... +++|.+.+ +....++.+.|
T Consensus 268 ~--~~~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~g-~~v~p~-~~~~~~~~i~~i~l~~------~~~~~~~~~~L 335 (409)
T 3jzl_A 268 Y--SLLEMYQ--GFFLAPHVTAQAIKGARFTAAMLAEFG-VEADPV-WDAPRTDLIQSVSFHN------KEKMVAFAQAI 335 (409)
T ss_dssp T--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEESC-TTSCCSSSCCEEECSC------HHHHHHHHHHH
T ss_pred H--HHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhCC-CcccCC-CCCCCccEEEEEEeCC------HHHHHHHHHHH
Confidence 0 1244433 445567788899999999999999974 577422 222 78888852 34556778888
Q ss_pred HhCC
Q psy852 718 NASG 721 (891)
Q Consensus 718 ~~~G 721 (891)
+...
T Consensus 336 ~~~~ 339 (409)
T 3jzl_A 336 QAAS 339 (409)
T ss_dssp HHTS
T ss_pred HhcC
Confidence 7753
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0017 Score=72.78 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=44.8
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+++.. ..+.+|+++-.++.+|.+-| +++|.++ ++||++|.+|-+++|+
T Consensus 185 d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~ 244 (424)
T 2e7u_A 185 DPEGLREVLKRRG---EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF 244 (424)
T ss_dssp CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT
T ss_pred CHHHHHHHHHhCC---CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc
Confidence 8999999987531 12456666666666898877 9999999 9999999999999765
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.004 Score=71.48 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=63.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC----CC-cEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD----PR-FEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~----~~-~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
.+|+.+-.++ ..++..+++++|.++|+++ +. +.-+ ++...++.|.+.+ +.....+.++|.+.|++
T Consensus 366 aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~-~~~g~~~~~~~~~------~~~~~~~~~~l~~~Gv~ 435 (472)
T 1ohv_A 366 EVINIIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISRV-RGRGTFCSFDTPD------ESIRNKLISIARNKGVM 435 (472)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEEE-EEETTEEEEECSS------HHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEee-cCCceEEEEEeCC------hhHHHHHHHHHHHCCeE
Confidence 4444443333 4566677788888887653 32 3222 1234566776642 23456788889889987
Q ss_pred EEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 724 HMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 724 ~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.. .+...+ ++++..+|++|||++++.|++++
T Consensus 436 ~~~----~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 436 LGG----CGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp CEE----ETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred Eec----CCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 432 134567 99999999999999999999876
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0012 Score=75.29 Aligned_cols=220 Identities=7% Similarity=-0.037 Sum_probs=124.5
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecc-cchHHHHHHHHH-
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSK-EAHSCVEKAAMM- 525 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~-~aH~Sv~Kaa~l- 525 (891)
+.+.+++.+..... ++....++|+++|..++.+.. .+.-.|+++. ..|.+....+.+
T Consensus 70 l~~~la~~~g~~~~--~~~i~~~sGt~Ai~~al~al~-------------------~~Gd~Vl~~~~~~y~~~~~~~~l~ 128 (431)
T 3ht4_A 70 LEKVYADVFGAEAG--LVRPQIISGTHAISTALFGIL-------------------RPGDELLYITGKPYDTLEEIVGVR 128 (431)
T ss_dssp HHHHHHHHTTCSEE--CCBTTSCSHHHHHHHHHHTTC-------------------CTTCEEEECSSSCCTTHHHHTTSS
T ss_pred HHHHHHHHhCCCcc--cccceeeCHHHHHHHHHHHhC-------------------CCCCEEEEeCCCCchhHHHHHhhc
Confidence 44455555543222 111223467899888875421 1112456665 778887766533
Q ss_pred ---------cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe----cCCccc-----------hhh--h----
Q psy852 526 ---------AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST----TLGTTS-----------CYR--K---- 575 (891)
Q Consensus 526 ---------~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva----taGTT~-----------c~~--~---- 575 (891)
.|++++.+|.+++|.+|+++|+++|++.+ ..+++.. ..|.+. |++ +
T Consensus 129 g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~t----k~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~l 204 (431)
T 3ht4_A 129 GKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNT----KMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVV 204 (431)
T ss_dssp SCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTE----EEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEE
T ss_pred ccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCC----eEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEE
Confidence 57899999999999999999999997532 2233332 223332 444 2
Q ss_pred -hcC-----C-------CCccEEEEcCcccCCc---ccccEEEEEeCCccchhhhcc--CCCccccCCCCCccccCCccc
Q psy852 576 -SQG-----I-------EYADSFNVNVNKWLLT---AFDSSCLWVADRYKLTSALVV--DPLYLQHGHEGAIDYRHWGIP 637 (891)
Q Consensus 576 -ldG-----i-------~~aDSIs~d~HK~L~~---P~g~G~llvR~~~~L~~~l~~--~~~Yl~~~~e~~~~~~~~ti~ 637 (891)
+|. . -.+|.+..++||++++ |.| |+++.++ +.+. .+.. ....+. ..
T Consensus 205 ivDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~-~li~-~l~~~~~~~~~g-------------~~ 268 (431)
T 3ht4_A 205 FVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKE-QYVE-ACAYRLTSPGIG-------------AE 268 (431)
T ss_dssp EEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECH-HHHH-HHHHHHSCTTTT-------------TS
T ss_pred EEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCce-EEEEecH-HHHH-HHHHHhccCCcc-------------cc
Confidence 221 1 1379999999999765 666 7776653 3222 2211 111110 00
Q ss_pred ccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-----EEEEEecCCcchhhhhhHHH
Q psy852 638 LSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-----LVCFRLRSENNLIADQNNRK 712 (891)
Q Consensus 638 ~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-----iV~Fr~~~~~~~~~d~ln~~ 712 (891)
.+-.+.. .|..+ -+...+..++++..++++++.+.|++.+ +++... ... ++.|.+.. +....+
T Consensus 269 ~~~~~~~--~~~~~--~~l~~~~~~~~~~~~~a~~l~~~L~~~g-~~v~p~-~~~~~~~li~~i~l~~------~~~~~~ 336 (431)
T 3ht4_A 269 AGASLYS--LQEMY--QGFFLAPHVAGQALKGAIFTAAFLEKLG-MNTSPA-WNAPRTDLIQSVQFDD------KDRMIA 336 (431)
T ss_dssp CSCCCSC--SHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCEESC-TTSCCSSSCCEEECCC------HHHHHH
T ss_pred cCccHHH--HHHHH--hHhhhHHHHHHHHHHHHHHHHHHHHhCc-CEecCC-CCCCCccEEEEEEeCC------HHHHHH
Confidence 0000110 12222 2445567788889999999999998864 455322 222 77788752 234557
Q ss_pred HHHHHHhC
Q psy852 713 LLEDINAS 720 (891)
Q Consensus 713 L~~~L~~~ 720 (891)
+.+.|...
T Consensus 337 ~~~~l~~~ 344 (431)
T 3ht4_A 337 FCQAIQYA 344 (431)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 77777764
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00023 Score=80.95 Aligned_cols=238 Identities=8% Similarity=0.025 Sum_probs=132.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH----HcCceEEEecC-CCC--CCc
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILEP-DDK--NSL 541 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~-d~~--G~m 541 (891)
|+|+++++..++...+. .. +.-.|+++.-.|.+....+. ..|.+++.+|. |++ +.+
T Consensus 125 t~ggt~al~l~~~~~~~--~~---------------~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~ 187 (448)
T 3meb_A 125 SLSGTGSLHIGFEFLHL--WM---------------PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEI 187 (448)
T ss_dssp ESHHHHHHHHHHHHHHH--HC---------------TTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSB
T ss_pred CCcHHHHHHHHHHHHHH--hC---------------CCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCc
Confidence 88999999775432221 10 11247888888888888888 78899999998 765 899
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE----ecCCccc-----------hhhh-----hcC----C-----------------C
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS----TTLGTTS-----------CYRK-----SQG----I-----------------E 580 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~-----------c~~~-----ldG----i-----------------~ 580 (891)
|+++|+++|++... + ..++++ +..|+.. |.++ +|. + .
T Consensus 188 d~e~l~~~l~~~~~-~-~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~ 265 (448)
T 3meb_A 188 DFSNTKKDIQSAPE-K-SIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDA 265 (448)
T ss_dssp CHHHHHHHHHHSCT-T-CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHT
T ss_pred CHHHHHHHHHhCCC-C-cEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhc
Confidence 99999999986311 1 223332 3355553 3321 111 0 0
Q ss_pred Ccc-EEEEcCcccCCcc-cccEEE--EE--------eCCc---cchhhhccCCCccccCCCCCccccCCcccccccccch
Q psy852 581 YAD-SFNVNVNKWLLTA-FDSSCL--WV--------ADRY---KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSL 645 (891)
Q Consensus 581 ~aD-SIs~d~HK~L~~P-~g~G~l--lv--------R~~~---~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL 645 (891)
..+ -+..++||.++.| ..+|++ +. .++. .+...+.. ..+.... ....+
T Consensus 266 ~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~--------------~~~~~ 328 (448)
T 3meb_A 266 GVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL---QIRKTWS--------------MSAIH 328 (448)
T ss_dssp TCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH---HHHTTTS--------------SCCHH
T ss_pred CCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH---HHhcccC--------------CccHH
Confidence 112 3477899988855 447887 44 3331 11111110 0000000 00122
Q ss_pred HHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHhccC--CC------cEEeCCCceeEEEEEecCCcchhhhhh
Q psy852 646 KLWFVIRTYGL--------SGLQKYIRRHCELAKLFEGKVRRD--PR------FEISNDVRLGLVCFRLRSENNLIADQN 709 (891)
Q Consensus 646 ~lW~~L~~lG~--------~G~~~~i~~~~~lA~~L~~~L~~~--~~------~eil~~~~~~iV~Fr~~~~~~~~~d~l 709 (891)
.++++...+.. +.++++.++..+++++|.+.|++. ++ +.... ++.+..+ +.+.
T Consensus 329 ~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~-~~~g~~~--~~~~-------- 397 (448)
T 3meb_A 329 GAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHIL-TAIGMFT--FTGL-------- 397 (448)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHH-HCCSSEE--ECCC--------
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeC-CCceEEE--ecCC--------
Confidence 33333333322 446677778888999999999876 44 43322 2223322 2222
Q ss_pred HHHHHHHH-HhCCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 710 NRKLLEDI-NASGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 710 n~~L~~~L-~~~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..++...| .+.|+++..++ + .+++... +.++|+++++.|++++.
T Consensus 398 ~~~~~~~ll~~~gV~v~~G~---g---Ris~a~~-~~~~i~~~~~~l~~~l~ 442 (448)
T 3meb_A 398 TPEHVDYLKEKWSIYLVKAG---G---RMSMCGL-TESNCDYVAEAIHDAVT 442 (448)
T ss_dssp CHHHHHHHHHHHCEEECSGG---G---EEEGGGC-CTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCEEEeCCC---c---EEEEecC-CHHHHHHHHHHHHHHHH
Confidence 12444555 55687744333 1 4666544 44569999999998763
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0087 Score=68.25 Aligned_cols=218 Identities=10% Similarity=0.056 Sum_probs=127.9
Q ss_pred eEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------hhh----------hhcC--------
Q psy852 529 RLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------CYR----------KSQG-------- 578 (891)
Q Consensus 529 ~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c~~----------~ldG-------- 578 (891)
+....++| ++|.+|.+.|++...+. .|-+|++..-... |.+ |+.|
T Consensus 177 ~~~~Y~vd~~t~~IDyd~~~~~A~~~-----kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~p 251 (490)
T 3ou5_A 177 ESMPYKLNPKTGLIDYNQLALTARLF-----RPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP 251 (490)
T ss_dssp ---CBCEETTTTEECHHHHHHHHHHH-----CCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC
T ss_pred cccccccCCCCCcccHHHHHHHHhhc-----CCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccC
Confidence 44445566 56999999999998874 2556655443322 221 3333
Q ss_pred --CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCC---CccccCCCCCcccc-CCcccccccccc-hHHHHHH
Q psy852 579 --IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP---LYLQHGHEGAIDYR-HWGIPLSRRFRS-LKLWFVI 651 (891)
Q Consensus 579 --i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~---~Yl~~~~e~~~~~~-~~ti~~SRr~~a-L~lW~~L 651 (891)
+++||-+|.+-||.|-+|-| |++++++...-...-.... .|-. ..+.. -.+++++=-... .+...++
T Consensus 252 sP~~~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~~~k~~~~~~~~~~k-----kin~aVFPg~qggp~~h~IAAkAVaf 325 (490)
T 3ou5_A 252 SPFKHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFED-----RINFAVFPSLQGGPHNHAIAAVAVAL 325 (490)
T ss_dssp CGGGTCSEEEEESSSTTCSCSC-EEEEEECSEEEECC--CCEEECCCHH-----HHHHHHTTTTCSSCCHHHHHHHHHHH
T ss_pred CccccceEEeccccccccCCCc-eEEEeccccccccccccchhHHHHHH-----HHHhhcCccccccchHHHHHHHHHHH
Confidence 57899999999999999985 7888887521000000000 0000 00000 012222211222 2233445
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-
Q psy852 652 RTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS- 729 (891)
Q Consensus 652 ~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~- 729 (891)
+..-...+++..++.+++|+.|++.|.+ .+|.+++ -.+..+|...+.+. +-.....-..|.+.|+..---+.
T Consensus 326 ~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~-~G~~vvsGgTdnHlvLvDl~~~-----g~tG~~ae~~Le~agItvNkN~iP 399 (490)
T 3ou5_A 326 KQACTPMFREYSLQVLKNARAMADALLE-RGYSLVSGGTDNHLVLVDLRPK-----GLDGARAERVLELVSITANKNTCP 399 (490)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECGGG-----TCCHHHHHHHHHHTTEECEEECCT
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHh-CCCeeecCCCCceEEEEecccc-----CCCHHHHHHHHHHcCcEECCCCCC
Confidence 5555667888899999999999999988 4899875 35667787777654 22344556667778876221110
Q ss_pred -----ccCCeEEEE----ecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 730 -----QEQNDEVFE----LQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 730 -----~~g~~~l~s----v~~~tT~edId~li~~L~ei~~~~~ 763 (891)
..-.++.+. +.+...++|++++.+.|.+++..-.
T Consensus 400 ~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~~~~ 442 (490)
T 3ou5_A 400 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGL 442 (490)
T ss_dssp TCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHHhhh
Confidence 111122344 4557899999999999988875433
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.01 Score=68.09 Aligned_cols=58 Identities=9% Similarity=-0.065 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 179 ~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++|++.+++.. ...+.+|++.-.++..|.+-| +++|+++|++||++|++|-++.|+.
T Consensus 207 ~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~g 268 (476)
T 3i5t_A 207 VQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFG 268 (476)
T ss_dssp HHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred HHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence 788998887421 122457777777778887666 9999999999999999999997653
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0014 Score=73.88 Aligned_cols=156 Identities=12% Similarity=0.015 Sum_probs=82.4
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|.+++ +|+++..+..|+++.+++ +.+.+...... ....+.. .-++.......+|+.+.. .+
T Consensus 264 ~di~s~--sK~l~~G~~~G~v~~~~~--~~~~l~~~~~~----------~~~~t~~-~~~~~~aa~~a~l~~~~~---~~ 325 (434)
T 2epj_A 264 GDIIVL--GKIIGGGFPVGAVAGSRE--VMSLLTPQGKV----------FNAGTFN-AHPITMAAGLATLKALEE---EP 325 (434)
T ss_dssp CSEEEE--EGGGGTTSSCEEEEECHH--HHTTBTTTSSB----------CCCCTTT-TCHHHHHHHHHHHHHHHH---SC
T ss_pred CCeeee--cchhcCCcceeeeeecHH--HHHhhccCCCc----------ccCCCCC-cCHHHHHHHHHHHHHHHh---cC
Confidence 576655 599887567899988753 22222110000 0000111 111122222334444333 23
Q ss_pred HHHHHHHHHHHHHHHhccCC---CcEEeCCCceeEEEEEecCCcchhh-------hhhHHHHHHHHHhCCcEEEeecccc
Q psy852 662 YIRRHCELAKLFEGKVRRDP---RFEISNDVRLGLVCFRLRSENNLIA-------DQNNRKLLEDINASGRLHMVPASQE 731 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~~iV~Fr~~~~~~~~~-------d~ln~~L~~~L~~~G~~~~s~s~~~ 731 (891)
..++..+++++|.+.|++.. ++....+...+++.|.+.+.....+ .....++.+.|.++|+++. +..
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~-~~~-- 402 (434)
T 2epj_A 326 VYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIA-PSN-- 402 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECC-SST--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEe-ccC--
Confidence 45666677788888876641 2211112234577888754100000 1245678888988997633 221
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 QNDEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 g~~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
... +.++..+|++|++++++.|++.+.
T Consensus 403 -~~~-~~~~~~~t~e~i~~~l~~l~~~l~ 429 (434)
T 2epj_A 403 -LEA-VFTGLPHQGEALEIAVEGLRSSLK 429 (434)
T ss_dssp -TSC-EECCTTCSHHHHHHHHHHHHHHHH
T ss_pred -CCc-EEEeccCCHHHHHHHHHHHHHHHH
Confidence 111 345567899999999999998764
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0013 Score=73.21 Aligned_cols=242 Identities=10% Similarity=-0.049 Sum_probs=132.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce-EEEecCCCCCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR-LKILEPDDKNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~-v~~Vp~d~~G~m 541 (891)
+|+ +++|+++++..++.. .. +.-.|++..-+|.+...++...|.+ ++.+|.++++.+
T Consensus 97 ~v~--~~~G~~~al~~~~~~-----~~---------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 154 (400)
T 3asa_A 97 EIF--ISDGAKVDLFRLLSF-----FG---------------PNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAF 154 (400)
T ss_dssp GEE--EESCHHHHHHHHHHH-----HC---------------SSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTT
T ss_pred HEE--EccChHHHHHHHHHH-----cC---------------CCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCc
Confidence 455 678888887764321 11 1124666777888888888777887 888988754433
Q ss_pred CHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C--------CCC-cc-
Q psy852 542 RGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G--------IEY-AD- 583 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G--------i~~-aD- 583 (891)
+.+ |++. .....++++. ..|++. |.++ +| + ++. .|
T Consensus 155 ~~~-l~~~------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 227 (400)
T 3asa_A 155 FPE-FPED------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFC 227 (400)
T ss_dssp CCC-CCTT------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGT
T ss_pred ccC-hhhc------cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCc
Confidence 321 2210 1111233322 234442 3221 01 1 111 23
Q ss_pred -EEEEcCcccCCcc-cccEEEEEeCCcc------chhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH
Q psy852 584 -SFNVNVNKWLLTA-FDSSCLWVADRYK------LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG 655 (891)
Q Consensus 584 -SIs~d~HK~L~~P-~g~G~llvR~~~~------L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG 655 (891)
-+..+++|+++.| ..+|+++.+++.. +........ ..+.. ....+.+.++...+.
T Consensus 228 ~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~~~~~~~a~~~~l~ 290 (400)
T 3asa_A 228 AIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFL--------------STTFN---GASIPAQEAGVAGLS 290 (400)
T ss_dssp EEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHH--------------HHHCC---CCCHHHHHHHHHHHH
T ss_pred eEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHh--------------ccCcc---CCChHHHHHHHHHhC
Confidence 5578899999744 4589988765431 111100000 00000 011223333333332
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEE-ecCCcchhhhhhHHHHHHHHHh-CCcEEEeeccc--c
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFR-LRSENNLIADQNNRKLLEDINA-SGRLHMVPASQ--E 731 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr-~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~--~ 731 (891)
...+++..++..+++++|.+.|++. ++++..+...+.++++ ++.. ....++.+.|.+ .|+.+..+... .
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~gv~v~~g~~f~~~ 363 (400)
T 3asa_A 291 ILPQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQAN------ISDRDLFDFFLREYHIAITPGIGFGRS 363 (400)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCCTT------CCTTTHHHHHHHHHSEECEEGGGGCGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccCCC------CCHHHHHHHHHHhCCEEEeChhHhCCC
Confidence 2246667777788899999999886 7887755456678888 5421 112356677764 58875544332 2
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+...+ +++ .+++++|+++++.|+++.
T Consensus 364 ~~~~iRis~--~~~~e~i~~~l~~l~~~~ 390 (400)
T 3asa_A 364 GSGFVRFSS--LGKREDILAACERLQMAP 390 (400)
T ss_dssp GTTCEEEEC--CSCHHHHHHHHHHHHC--
T ss_pred CCCEEEEEe--eCCHHHHHHHHHHHHHHH
Confidence 33445 773 578999999999998765
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0057 Score=69.61 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 179 ~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++|++.+++.. ...+.+|++.-.++..|.+-| +++|+++|++||++|++|-++.|+.
T Consensus 207 ~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 268 (460)
T 3gju_A 207 ADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFG 268 (460)
T ss_dssp HHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred HHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 688998887421 123467777777888888776 9999999999999999999997653
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0079 Score=68.06 Aligned_cols=264 Identities=12% Similarity=0.082 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++++++.+.... +. +++ +++||+|++..++.+||... + ++-+|+....-|....-+..
T Consensus 99 ~~~la~~l~~~~~~-~~-~v~--~~~gg~eA~~~al~~ar~~~-~---------------~~~vi~~~~~yhg~~~~~~~ 158 (453)
T 2cy8_A 99 EVRWAERIVAAFPS-IR-KLR--FTGSGTETTLLALRVARAFT-G---------------RRMILRFEGHYHGWHDFSAS 158 (453)
T ss_dssp HHHHHHHHHHHCTT-CS-EEE--EESCHHHHHHHHHHHHHHHH-C---------------CCEEEEECC-----------
T ss_pred HHHHHHHHHhhCCC-CC-EEE--EeCCHHHHHHHHHHHHHHhh-C---------------CCEEEEEcCCcCCCchhhHh
Confidence 34555666555432 22 455 78899999999999987521 1 11234444444532221111
Q ss_pred ----------HcCc------eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----CCccc------------h
Q psy852 525 ----------MAFV------RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----LGTTS------------C 572 (891)
Q Consensus 525 ----------l~gv------~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~------------c 572 (891)
..++ .+..+|. .|+++|+++|++.. ..+-++++.. .|... |
T Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~--~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~ 231 (453)
T 2cy8_A 159 GYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHG--SDIAAFIAEPVGSHFGVTPVSDSFLREGAELA 231 (453)
T ss_dssp -----------------CGGGEEEECT-----TCHHHHHHHHHHHG--GGEEEEEECSSEHHHHTEECCHHHHHHHHHHH
T ss_pred hcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcC--CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHH
Confidence 1122 2444443 38999999997531 1122333322 34322 3
Q ss_pred hhh-----hc----CC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccc
Q psy852 573 YRK-----SQ----GI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDY 631 (891)
Q Consensus 573 ~~~-----ld----Gi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~ 631 (891)
.++ +| |+ -..|.+++ .|+++..+++|+++.+++ +.+.+.... .. ...
T Consensus 232 ~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~s~--sK~l~~G~~~G~v~~~~~--~~~~l~~~~----~~--~~~-- 299 (453)
T 2cy8_A 232 RQYGALFILDEVISGFRVGNHGMQALLDVQPDLTCL--AKASAGGLPGGILGGRED--VMGVLSRGS----DR--KVL-- 299 (453)
T ss_dssp HHTTCEEEEECTTTTTTTCTTHHHHHHTCCCSEEEE--EGGGGTTSSCEEEEECHH--HHTTSSSCC-------------
T ss_pred HHcCCEEEEecCccccccCchhhhHHhCCCCcEEEE--ChhhhCCcceEEEechHH--HHHHhcccc----CC--Cce--
Confidence 331 11 11 02476654 599987778999998753 222221100 00 000
Q ss_pred cCCcccccccccchHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecC-----C
Q psy852 632 RHWGIPLSRRFRSLKLWFVIRT-YGLSGLQKYIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRS-----E 701 (891)
Q Consensus 632 ~~~ti~~SRr~~aL~lW~~L~~-lG~~G~~~~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~-----~ 701 (891)
...+.. .-++.......+|+. + . .+..++..++++++.+.|++. +....+ ++..+++.+.+.+ .
T Consensus 300 ~~~t~~-~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~ 373 (453)
T 2cy8_A 300 HQGTFT-GNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFARKGLNWLA-YGRFSGFHLMPGLPPNTTD 373 (453)
T ss_dssp ----CC-CCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-ECCTTEEEEEETSCTTCCC
T ss_pred eCCCCC-CCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEE-EEeeeEEEEEEeccccccc
Confidence 000110 011112222334443 3 2 344566677778888777653 322222 3344577888753 1
Q ss_pred c-chhh-------hhhHHHHHHHHHhCCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 702 N-NLIA-------DQNNRKLLEDINASGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 702 ~-~~~~-------d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
. ...+ .....++.+.|.++|+++ .+ ... + .++...+++||+++++.|++.+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v-~~----~~~-~-~l~~~~t~~~i~~~l~~l~~~l~ 433 (453)
T 2cy8_A 374 TGSITRAEVARPDVKMIAAMRMALILEGVDI-GG----RGS-V-FLSAQHEREHVEHLVTTFDRVLD 433 (453)
T ss_dssp CHHHHTTCSCCCCHHHHHHHHHHHHHTTEEC-BT----TTE-E-ECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHCCeEE-eC----CCC-E-EeeccCCHHHHHHHHHHHHHHHH
Confidence 0 0000 123567888888899874 22 112 3 34567899999999999998874
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0032 Score=71.67 Aligned_cols=219 Identities=8% Similarity=0.055 Sum_probs=122.9
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecc-cchHHHH--------
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSK-EAHSCVE-------- 520 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~-~aH~Sv~-------- 520 (891)
+.+++.+... . .++.+.+++|+++|..++.+. . .+.-.|+++. ..|....
T Consensus 81 ~~lA~l~g~e-~-alv~p~~~sGt~A~~~al~al----l---------------~pGD~Vl~~~~~~y~~~~~~~g~~~~ 139 (427)
T 3hvy_A 81 RVYANIFNTE-S-AFVRPHFVNGTHAIGAALFGN----L---------------RPNDTMMSICGMPYDTLHDIIGMDDS 139 (427)
T ss_dssp HHHHHHHTCS-E-EEEETTCCSHHHHHHHHHHHT----C---------------CTTCEEEECSSSCCGGGHHHHTCCTT
T ss_pred HHHHHHhCCC-c-eEEeCCCCcHHHHHHHHHHHh----c---------------CCCCEEEEeCCCCchhHHHHhccccc
Confidence 3444444432 2 244332678899988776652 1 1122355554 4454333
Q ss_pred ---HHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCC----ccc-----------hhh--h-----
Q psy852 521 ---KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG----TTS-----------CYR--K----- 575 (891)
Q Consensus 521 ---Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataG----TT~-----------c~~--~----- 575 (891)
..+...|++++.+|. ++|.+|+++|+++|++.. +...+++..+.| .|. |++ +
T Consensus 140 ~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~--~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~li 216 (427)
T 3hvy_A 140 KKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDD--SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVF 216 (427)
T ss_dssp CCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCT--TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEE
T ss_pred hhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCC--CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEE
Confidence 333446889999999 789999999999998410 112334444222 221 444 2
Q ss_pred hcC-----C-------CCccEEEEcCcccCCc---ccccEEEEEeCCccchhhhcc--CCCccccCCCCCccccCCcccc
Q psy852 576 SQG-----I-------EYADSFNVNVNKWLLT---AFDSSCLWVADRYKLTSALVV--DPLYLQHGHEGAIDYRHWGIPL 638 (891)
Q Consensus 576 ldG-----i-------~~aDSIs~d~HK~L~~---P~g~G~llvR~~~~L~~~l~~--~~~Yl~~~~e~~~~~~~~ti~~ 638 (891)
+|. + ..+|.++.+.||++++ |.| |+++.+ ++.+.. +.. ....+ +...
T Consensus 217 vD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~G-G~i~~~-~~li~~-l~~~~~~~~~-------------g~~~ 280 (427)
T 3hvy_A 217 VDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTG-GYIAGK-EEYVTQ-ATFRVTVPGI-------------GGEC 280 (427)
T ss_dssp EECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSC-EEEEEC-HHHHHH-HHHHHSCTTT-------------GGGC
T ss_pred EECCccccccCCCCcccCCeEEEECCcccccccccceE-EEEEEC-HHHHHH-HHHHhhcCCc-------------cccc
Confidence 221 1 1389999999999987 443 666654 333322 211 11111 0000
Q ss_pred cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-----EEEEEecCCcchhhhhhHHHH
Q psy852 639 SRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-----LVCFRLRSENNLIADQNNRKL 713 (891)
Q Consensus 639 SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-----iV~Fr~~~~~~~~~d~ln~~L 713 (891)
+-.+. ..|..++ |..-...++++..++++++++.|++.+ +++... ... +++|.+.+ ++...++
T Consensus 281 ~~~~~--~a~~~~~--gl~~~~~r~~~~~~~a~~la~~L~~~g-~~V~p~-~~~~~~~li~~~~l~~------~~~~~~f 348 (427)
T 3hvy_A 281 GSTFG--VMRSLYE--GLFMAPHVTIEAVKGAVFCARIMELAG-FDVLPK-YNDKRTDIIQAIKFND------EKKLIDF 348 (427)
T ss_dssp CCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEESC-TTSCCSSSEEEEECSS------HHHHHHH
T ss_pred CCCHH--HHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHhCC-CeecCC-CCCCCceEEEEEeCCC------HHHHHHH
Confidence 00011 1344444 445556788899999999999999875 576432 233 88898852 3455677
Q ss_pred HHHHHhC
Q psy852 714 LEDINAS 720 (891)
Q Consensus 714 ~~~L~~~ 720 (891)
.+.|...
T Consensus 349 ~~~l~~~ 355 (427)
T 3hvy_A 349 IKGIQTA 355 (427)
T ss_dssp HHHHHHT
T ss_pred HHHhccc
Confidence 7777764
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0038 Score=71.05 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 179 ~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++|++.+++.. ...+.+|++.-.++..|.+-| +++|+++|++||++|++|-++.|+.
T Consensus 205 ~~~le~~i~~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 266 (459)
T 4a6r_A 205 ARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFG 266 (459)
T ss_dssp HHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred HHHHHHHHHHcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 788998887421 122467777777788888888 9999999999999999999997643
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00043 Score=76.21 Aligned_cols=284 Identities=12% Similarity=0.062 Sum_probs=178.5
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH----H
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----K 521 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~----K 521 (891)
.++.+.+++.+...+.-+++ +++|+++++..++.+++.... .+.-.|+++..+|++.. .
T Consensus 70 ~~l~~~la~~~~~~~~~~v~--~~~g~t~a~~~~~~~~~~~~~---------------~~gd~vl~~~~~~~~~~~~~~~ 132 (406)
T 1kmj_A 70 ENVRKRASLFINARSAEELV--FVRGTTEGINLVANSWGNSNV---------------RAGDNIIISQMEHHANIVPWQM 132 (406)
T ss_dssp HHHHHHHHHHTTCSCGGGEE--EESSHHHHHHHHHHHTHHHHC---------------CTTCEEEEETTCCGGGTHHHHH
T ss_pred HHHHHHHHHHcCCCCCCeEE--EeCChhHHHHHHHHHhhhhcC---------------CCCCEEEEecccchHHHHHHHH
Confidence 44555666666551222555 678999999999988763211 01234777777877653 3
Q ss_pred HHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc--------hhhh-----hcCC------
Q psy852 522 AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS--------CYRK-----SQGI------ 579 (891)
Q Consensus 522 aa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c~~~-----ldGi------ 579 (891)
.+...|.+++.+|.++++.+|+++|+++|++.+ ..+++... .|... |+++ +|++
T Consensus 133 ~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~----~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~ 208 (406)
T 1kmj_A 133 LCARVGAELRVIPLNPDGTLQLETLPTLFDEKT----RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH 208 (406)
T ss_dssp HHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTE----EEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS
T ss_pred HHHhCCCEEEEEecCCCCCcCHHHHHHHhccCC----eEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCC
Confidence 345678899999999899999999999997532 12223222 24443 4431 2221
Q ss_pred ------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCcc--ccCCCC---CccccCCccc-ccccc-cch
Q psy852 580 ------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYL--QHGHEG---AIDYRHWGIP-LSRRF-RSL 645 (891)
Q Consensus 580 ------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl--~~~~e~---~~~~~~~ti~-~SRr~-~aL 645 (891)
-.+|.++.++||++ +|.|+|+++++++ +.+.+.. ...+. ...... .+......+. ++... ..+
T Consensus 209 ~~~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (406)
T 1kmj_A 209 PVDVQALDCDFYVFSGHKLY-GPTGIGILYVKEA--LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGII 285 (406)
T ss_dssp CCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHH--HHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHH
T ss_pred CCcccccCCCEEEEEchhcc-CCCCcEEEEEeHH--HHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHH
Confidence 13799999999977 6888999998743 2222211 00000 000000 0000000111 11111 122
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
.+..+++.+...++.+..++..++++++.+.|++.++++++.+. ..++++|.+++. ....+.+.|.+.|+.+
T Consensus 286 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v 358 (406)
T 1kmj_A 286 GLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH-------HAYDVGSFLDNYGIAV 358 (406)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC-------CHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCC-------CHHHHHHHHhhCCcEE
Confidence 33355666666688888999999999999999998899988653 678889987532 2456788888899876
Q ss_pred Eeecc--------ccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 725 MVPAS--------QEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 725 ~s~s~--------~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..+.. ......+ ++++..+|++|+++++++|+++..
T Consensus 359 ~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 403 (406)
T 1kmj_A 359 RTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR 403 (406)
T ss_dssp EEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 54432 1123567 999999999999999999998864
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.001 Score=71.93 Aligned_cols=132 Identities=11% Similarity=0.001 Sum_probs=85.4
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa~ 524 (891)
++.+.+++.+...+.-+++ +++|+++++..++.+... + .+++....|++ ....+.
T Consensus 47 ~~~~~la~~~g~~~~~~v~--~~~g~t~al~~~~~~l~~-------------------~--~~i~~~~~~~~~~~~~~~~ 103 (362)
T 3ffr_A 47 TASDNLKTLLELPSNYEVL--FLASATEIWERIIQNCVE-------------------K--KSFHCVNGSFSKRFYEFAG 103 (362)
T ss_dssp HHHHHHHHHTTCCTTEEEE--EESCHHHHHHHHHHHHCS-------------------S--EEEEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEE--EeCCchHHHHHHHHhccC-------------------C--cEEEEcCcHHHHHHHHHHH
Confidence 3444556666443333566 678999999888765321 1 34445555655 233455
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh------hcC---------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK------SQG--------- 578 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~------ldG--------- 578 (891)
..|.+++.+|.+.++.+|+++|+ +++. ...++++. ..|+.. |+++ +|+
T Consensus 104 ~~g~~~~~v~~~~~~~~d~~~l~--~~~~----~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~ 177 (362)
T 3ffr_A 104 ELGREAYKEEAAFGKGFYPADIT--VPAD----AEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKF 177 (362)
T ss_dssp HTTCEEEEEECCTTCCCCGGGCC--CCTT----CCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCC
T ss_pred HhCCCeEEEecCCCCCCCHHHHh--ccCC----ccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCccc
Confidence 67889999999989999999998 3322 12233332 345543 5443 232
Q ss_pred -CCCccEEEEcCcccCCcccccEEEEEeCC
Q psy852 579 -IEYADSFNVNVNKWLLTAFDSSCLWVADR 607 (891)
Q Consensus 579 -i~~aDSIs~d~HK~L~~P~g~G~llvR~~ 607 (891)
+..+|.+++++|||+++|.|+|+++++++
T Consensus 178 ~~~~~d~~~~s~~K~~~~~~G~g~~~~~~~ 207 (362)
T 3ffr_A 178 DWTKIDSVFFSVQKCFGLPAGLGVWILNDR 207 (362)
T ss_dssp CTTSCSEEEEETTSTTCCCSCCEEEEEEHH
T ss_pred ChhHCcEEEEecccccCCCCceEEEEECHH
Confidence 23389999999999999999999888764
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0004 Score=77.43 Aligned_cols=237 Identities=9% Similarity=0.041 Sum_probs=134.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC-CC-CCCcCHHHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP-DD-KNSLRGATL 546 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~-d~-~G~mD~~~L 546 (891)
++|+++++..++..++.. . +.-.|+++.-.|.+....+...|.+++.+|. ++ ++.+|+++|
T Consensus 104 t~g~~~a~~~~~~~~~~~--~---------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 166 (412)
T 1yaa_A 104 SLSGTGALHISAKFFSKF--F---------------PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGF 166 (412)
T ss_dssp EEHHHHHHHHHHHHHHHH--C---------------TTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHH
T ss_pred ccchHhHHHHHHHHHHHh--C---------------CCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHH
Confidence 788999988875443321 0 1113677777888888888888899999998 53 688999999
Q ss_pred HHHHHhhhhcCCccEEEEe----cCCccc-----------hhhh-----h---------cC-------C-----CCc---
Q psy852 547 RQVMQQDETMGYIPFFVST----TLGTTS-----------CYRK-----S---------QG-------I-----EYA--- 582 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~Vva----taGTT~-----------c~~~-----l---------dG-------i-----~~a--- 582 (891)
++++++.. ....++++. ..|+.. |.++ + .+ + ...
T Consensus 167 ~~~l~~~~--~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1yaa_A 167 LNAIQKAP--EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVS 244 (412)
T ss_dssp HHHHHHSC--TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTC
T ss_pred HHHHHhCC--CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCc
Confidence 99997631 111233322 245542 3321 1 11 1 011
Q ss_pred -cEEEEcCcccCCcccc--cEEEE--E----eCCcc---chhhhccCCCccccCCCCCccccCCcccccccccchHHHHH
Q psy852 583 -DSFNVNVNKWLLTAFD--SSCLW--V----ADRYK---LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV 650 (891)
Q Consensus 583 -DSIs~d~HK~L~~P~g--~G~ll--v----R~~~~---L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~ 650 (891)
+-+..+.||.++ |.| +|+++ . ++++. +.+.+.. ..+.. + + ....+.++++
T Consensus 245 ~~i~~~s~sK~~~-~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~---------~----~-~~~~~~~~a~ 306 (412)
T 1yaa_A 245 PVFVCQSFAKNAG-MYGERVGCFHLALTKQAQNKTIKPAVTSQLAK---IIRSE---------V----S-NPPAYGAKIV 306 (412)
T ss_dssp CEEEEEECTTTSC-CGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH---HHHTT---------T----S-SCCHHHHHHH
T ss_pred ceEEEeccCCCCC-CcCCcceEEEEEecCCCCCHHHHHHHHHHHHH---HHhhc---------c----C-CCChHHHHHH
Confidence 234668999887 545 78887 4 24331 2121111 00000 0 0 0011223333
Q ss_pred HHHHH--------HhhHHHHHHHHHHHHHHHHHHhccCC---CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 651 IRTYG--------LSGLQKYIRRHCELAKLFEGKVRRDP---RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 651 L~~lG--------~~G~~~~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
...+. .+.+++..++..++++++.+.|++.+ ++++.. +..+.+.|. +. + .+.+...+.+
T Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~--~~-----~--~~~~~~~l~~ 376 (412)
T 1yaa_A 307 AKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIV-NQCGMFSFT--GL-----T--PQMVKRLEET 376 (412)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHH-HCCSSEEEC--CC-----C--HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeec-cCceEEEee--CC-----C--HHHHHHHHHh
Confidence 33332 23567777788889999999998764 366543 333433332 22 1 2345445556
Q ss_pred CCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 720 SGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 720 ~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.|+.+. + .+.++++. .++++++++++.|+++..
T Consensus 377 ~gi~v~-~------~~Ris~~~-~~~~~i~~~~~~l~~~~~ 409 (412)
T 1yaa_A 377 HAVYLV-A------SGRASIAG-LNQGNVEYVAKAIDEVVR 409 (412)
T ss_dssp HCEECC-T------TSEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred CCEEec-c------CcEEEEcc-CCHhHHHHHHHHHHHHHH
Confidence 787632 2 12277764 589999999999998763
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0037 Score=69.23 Aligned_cols=124 Identities=10% Similarity=-0.029 Sum_probs=71.1
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEeccc---chHHHHHHHH
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKE---AHSCVEKAAM 524 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~---aH~Sv~Kaa~ 524 (891)
+++.+++.+...+.=+++ +++||++++..++.+. +. + .|+++.. .|+++..++.
T Consensus 63 ~~~~~a~~~g~~~~~~~~--~~~ggt~a~~~~~~~~-----~g---------------d-~Vl~~~~~y~~~~~~~~~~~ 119 (374)
T 2aeu_A 63 VNEYGLKHLGGDENDKCV--GFNRTSSAILATILAL-----KP---------------K-KVIHYLPELPGHPSIERSCK 119 (374)
T ss_dssp HHHHHHHHHTCCTTEEEE--EESSHHHHHHHHHHHH-----CC---------------S-EEEEECSSSSCCTHHHHHHH
T ss_pred HHHHHHHHhCCCCcceEE--EEcChHHHHHHHHHhC-----CC---------------C-EEEEecCCCCccHHHHHHHH
Confidence 333444555432111444 6789999999888764 11 1 2455544 5667666667
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCcc-EEEEe---cCC-ccc--------hhhh-------------h--
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIP-FFVST---TLG-TTS--------CYRK-------------S-- 576 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip-~~Vva---taG-TT~--------c~~~-------------l-- 576 (891)
..|.+++.+ +|+++|+++ +++ ... ++++. ..| +.. |+++ .
T Consensus 120 ~~g~~~~~v-------~d~~~l~~~-~~~----~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~ 187 (374)
T 2aeu_A 120 IVNAKYFES-------DKVGEILNK-IDK----DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRL 187 (374)
T ss_dssp HTTCEEEEE-------SCHHHHHTT-CCT----TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHH
T ss_pred HcCcEEEEe-------CCHHHHHhc-CCC----ccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCccccccc
Confidence 778888777 388888876 321 112 22222 224 222 3321 1
Q ss_pred cCCC------CccEEEEcCcccCCcccccEEEEEeCC
Q psy852 577 QGIE------YADSFNVNVNKWLLTAFDSSCLWVADR 607 (891)
Q Consensus 577 dGi~------~aDSIs~d~HK~L~~P~g~G~llvR~~ 607 (891)
.... .+|.+..++||++.+| ..|+++.+++
T Consensus 188 ~~~~~~~~~~~~di~~~S~sK~l~g~-~~G~~~~~~~ 223 (374)
T 2aeu_A 188 LFNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKE 223 (374)
T ss_dssp HTTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHH
T ss_pred ccccCCccccCCcEEEecCcccccCc-ceEEEEECHH
Confidence 0111 3689999999998765 8898887653
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.01 Score=68.13 Aligned_cols=160 Identities=8% Similarity=-0.018 Sum_probs=80.9
Q ss_pred CCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 578 GIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 578 Gi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
|+. .|-+++. |.++.-++.|++..+.+ +.+.+........+ ..|+. +-+..+...-++|+.+-.+
T Consensus 277 gv~-PDi~t~g--K~lggG~Piga~~~~~e--i~~~~~~~~~~~~h---------~~T~~-gnPla~AAala~L~~l~~~ 341 (454)
T 4ao9_A 277 GIR-SDLTTLG--KYIGGGMSFGAFGGRAD--VMALFDPRTGPLAH---------SGTFN-NNVMTMAAGYAGLTKLFTP 341 (454)
T ss_dssp TCC-CSEEEEE--GGGGTTSSCEEEEECHH--HHGGGCTTTCSCCC---------CCTTT-TCHHHHHHHHHHHHHTSCH
T ss_pred CCC-CcEEEec--cccCCCCcceeeeeHHH--HHHHHhhccCCccc---------cCCCC-CCHHHHHHHHHHHHHHhcc
Confidence 443 5887765 66655567799988865 22322211111101 11221 1122222333445544433
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC-CCcEEeCCC-c-eeEEEEEecCCc---ch---hh-hhhHHHHHHHHHhCCcEEEee
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRD-PRFEISNDV-R-LGLVCFRLRSEN---NL---IA-DQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~-~~~eil~~~-~-~~iV~Fr~~~~~---~~---~~-d~ln~~L~~~L~~~G~~~~s~ 727 (891)
+.+++..++.++|.++|+++ ....+..+. . -.++.+.+.... .. .. ..+...+...|.++|++ +.+
T Consensus 342 ---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~-~~p 417 (454)
T 4ao9_A 342 ---EAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIY-SSP 417 (454)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEE-CCT
T ss_pred ---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEE-EcC
Confidence 34555666777777777653 111111111 1 135555554321 11 11 23445677788889976 222
Q ss_pred ccccCCeEEEEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEVFELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 728 s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
. .. +.+....|++|||+++++|++++...
T Consensus 418 ~----~~--~~~s~~~T~~dId~~l~al~~~l~~~ 446 (454)
T 4ao9_A 418 R----GF--VVLSLPLTDADIDRYVAAIGSFIGGH 446 (454)
T ss_dssp T----CE--EECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred C----CC--EEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 1 11 22334468999999999999987543
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0051 Score=68.38 Aligned_cols=241 Identities=10% Similarity=0.016 Sum_probs=132.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC--CCCCCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~--d~~G~mD~~~ 545 (891)
.+.++++++..+...++.. ..+.-.|++..-.|.+....+...|.+++.+|. ++++.+|+++
T Consensus 109 ~~~~g~ga~~~~~~~~~~~----------------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 172 (409)
T 4eu1_A 109 QTLGGTGALRIGGDLLNRF----------------VANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAG 172 (409)
T ss_dssp EESHHHHHHHHHHHHGGGT----------------SSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHH
T ss_pred ecccchHHHHHHHHHHHHh----------------cCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHH
Confidence 3677788877655443221 112235788888899998888899999999998 4568999999
Q ss_pred HHHHHHhhhhcCCccEEEE----ecCCccc-----------hhhh-----hc---------C-----C-------CCccE
Q psy852 546 LRQVMQQDETMGYIPFFVS----TTLGTTS-----------CYRK-----SQ---------G-----I-------EYADS 584 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vv----ataGTT~-----------c~~~-----ld---------G-----i-------~~aDS 584 (891)
|++++++... ...++++ +..|++. |.++ +| + . ...+.
T Consensus 173 l~~~l~~~~~--~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (409)
T 4eu1_A 173 MLECLDKAPE--GSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNL 250 (409)
T ss_dssp HHHHHHHSCT--TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCC
T ss_pred HHHHHHhCCC--CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcE
Confidence 9999975311 1223332 2355553 3321 01 0 0 11233
Q ss_pred E-EEcCcccCCcc-cccEEE--EEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-----
Q psy852 585 F-NVNVNKWLLTA-FDSSCL--WVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG----- 655 (891)
Q Consensus 585 I-s~d~HK~L~~P-~g~G~l--lvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG----- 655 (891)
| ..+.+|.++.| ..+|++ ++.+++........-..+.+.. +. ....+.++++...+.
T Consensus 251 i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~----------~~----~~~~~~~~~~~~~l~~~~~~ 316 (409)
T 4eu1_A 251 IVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPM----------YN----NPPLYGAWVVSSILKDPQLT 316 (409)
T ss_dssp EEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHH----------HS----SCCHHHHHHHHHHHHCHHHH
T ss_pred EEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhh----------cC----CCChHHHHHHHHHhCCHHHH
Confidence 3 44788988755 457887 6665542111100000000000 00 001233444444333
Q ss_pred ---HhhHHHHHHHHHHHHHHHHHHhccCCC---cEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeec
Q psy852 656 ---LSGLQKYIRRHCELAKLFEGKVRRDPR---FEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPA 728 (891)
Q Consensus 656 ---~~G~~~~i~~~~~lA~~L~~~L~~~~~---~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s 728 (891)
.+.+.+..++..++++++.+.|++.+. +++.. ++.+.+.| .+. +..+...|. +.|+++. +.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~--~~~--------~~~~~~~ll~~~gv~v~-p~ 384 (409)
T 4eu1_A 317 ALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIE-RQVGMMAY--TGL--------TREQVELLRSEYHIYMT-LN 384 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HSCSSEEE--CCC--------CHHHHHHHHHHHCEECC-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCceEEEE--eCC--------CHHHHHHHHHcCCEEEc-CC
Confidence 344667777888899999999987631 44432 33344333 221 123344544 5687632 21
Q ss_pred cccCCeEEEEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 SQEQNDEVFELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 ~~~g~~~l~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+++... ++++|++++++|+++.
T Consensus 385 ------~Ri~~~~~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 ------GRAAVSGL-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ------CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred ------CEEEEEec-CHhhHHHHHHHHHHHh
Confidence 13666544 4566999999998764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.014 Score=65.30 Aligned_cols=154 Identities=7% Similarity=-0.007 Sum_probs=81.4
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCC-CccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP-LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~-~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-+| .+|+++..+.+|+++.+++ +.+.+.... .+. ..+... -++.......+++.+.. ..
T Consensus 259 ~di~s--~sK~l~~G~~~G~~~~~~~--~~~~~~~~~~~~~-----------~~t~~~-~~~~~aaa~aal~~~~~--~~ 320 (424)
T 2e7u_A 259 PDLVT--LGKILGGGLPAAAYAGRRE--IMEKVAPLGPVYQ-----------AGTLSG-NPLAMAAGLATLELLEE--NP 320 (424)
T ss_dssp CSEEE--ECGGGGTTSSCEEEEECHH--HHTTBTTTSSBCC-----------CCTTCS-CHHHHHHHHHHHHHHHH--CT
T ss_pred cchhh--hhhhhhCCcceEEEEEcHH--HHhhhcccCCccc-----------CCCCCC-CHHHHHHHHHHHHHHHh--cc
Confidence 57664 4699987678899988753 222221100 000 001111 01112222333443322 24
Q ss_pred HHHHHHHHHHHHHHHHhccCC---CcEEeCCCceeEEEEEecCCcchh-------hhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 661 KYIRRHCELAKLFEGKVRRDP---RFEISNDVRLGLVCFRLRSENNLI-------ADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~~iV~Fr~~~~~~~~-------~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
+..++..++++++.+.|++.. ++....++..+++.+.+.+..... -.....++.+.|.+.|+++..+. .
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~ 399 (424)
T 2e7u_A 321 GYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN-F 399 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC-C
Confidence 566677778888888887641 221111233457778775311000 01245678888888897743221 1
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHHHH
Q psy852 731 EQNDEVFELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 731 ~g~~~l~sv~~~tT~edId~li~~L~ei 758 (891)
.. +.++...|++|++++++.|++.
T Consensus 400 --~~--~~~~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 400 --EA--AFLSVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp --SC--EECCTTCCHHHHHHHHHHHHHH
T ss_pred --Cc--eEeeccCCHHHHHHHHHHHHHh
Confidence 11 3445678999999999999864
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.016 Score=66.43 Aligned_cols=61 Identities=5% Similarity=-0.036 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 177 id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
.|+++|++.|++....+..+.+|++....+++|.+-| +++|+++|++||++||+|.+|.|+
T Consensus 240 ~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~ 304 (472)
T 1ohv_A 240 RCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGG 304 (472)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCC
Confidence 4789999999763221113567777777888999888 999999999999999999999763
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0064 Score=68.77 Aligned_cols=246 Identities=8% Similarity=-0.076 Sum_probs=137.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+.... . . .+...+.-.|+++.-.|......+...|.+++. ..+|
T Consensus 125 ~iv--~t~G~~~al~~~~~~l~~~---~-~-------~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~------~~~d 185 (427)
T 2hox_A 125 YIV--FGVGVTQLIHGLVISLSPN---M-T-------ATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV------WAGN 185 (427)
T ss_dssp EEE--EESHHHHHHHHHHHHHSCC---T-T-------TCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE------EEEE
T ss_pred EEE--EeCCHHHHHHHHHHHHhhc---c-c-------cccCCCCCEEEEeCCCcccHHHHHHHcCCeeee------ecCC
Confidence 566 6788899988777654100 0 0 000112235788888899998888887766542 4577
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc---hhh--------hhc------CC-CCccEEEEcCcccCCcc-cccE
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS---CYR--------KSQ------GI-EYADSFNVNVNKWLLTA-FDSS 600 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~---c~~--------~ld------Gi-~~aDSIs~d~HK~L~~P-~g~G 600 (891)
+++|++++++.+ ..++++ +-.|++. |.. ..+ .+ ...|-+..++||.++.| .-+|
T Consensus 186 ~~~l~~~~~~~~----k~v~l~~p~NPtG~~~~~~l~~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G~RiG 261 (427)
T 2hox_A 186 AANYVNVSNPEQ----YIEMVTSPNNPEGLLRHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFG 261 (427)
T ss_dssp GGGGTTCSCGGG----EEEEEESSCTTTCCCCCCSSTTCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCE
T ss_pred HHHHHHhhcCCc----eEEEEcCCCCCcccccHHHHcCCCEEEeecccCCCCCccccCCCceEEEEeChhcCCCCCceEE
Confidence 888887775421 122332 1245432 110 001 11 23578888999988755 3389
Q ss_pred EEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-------------hhHHHHHHHHH
Q psy852 601 CLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-------------SGLQKYIRRHC 667 (891)
Q Consensus 601 ~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-------------~G~~~~i~~~~ 667 (891)
+++.++++.+........ +. .+ ....+.++++...+.. +-+++..+...
T Consensus 262 ~~~~~~~~l~~~l~~~~~-~~-----------~~------~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (427)
T 2hox_A 262 WALIKDESVYNNLLNYMT-KN-----------TE------GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLR 323 (427)
T ss_dssp EEEECCHHHHHHHHHHHH-HH-----------TS------SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHH-hc-----------CC------CCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHH
Confidence 998875543322111100 00 00 0112333333333321 12334456667
Q ss_pred HHHHHHHHHhccCCCcEE--eC-C----------Cc-eeEEEEEecCCcchhhhhhHHHHHHHH-HhCCcEEEeecccc-
Q psy852 668 ELAKLFEGKVRRDPRFEI--SN-D----------VR-LGLVCFRLRSENNLIADQNNRKLLEDI-NASGRLHMVPASQE- 731 (891)
Q Consensus 668 ~lA~~L~~~L~~~~~~ei--l~-~----------~~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L-~~~G~~~~s~s~~~- 731 (891)
+..++|.+.|++.+++++ +. + |+ ...+++++.+ ...++.+.| .+.|+.+..+....
T Consensus 324 ~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--------~~~~~~~~ll~~~gI~v~pg~~f~~ 395 (427)
T 2hox_A 324 ERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--------EEDKDCYQTFQNGRINTQNGVGFEA 395 (427)
T ss_dssp HHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--------GGGCSHHHHHHHTTEECEEGGGGTS
T ss_pred HHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--------cHHHHHHHHHHHCCEEEcCCCccCC
Confidence 788999999998888876 22 1 11 3456667743 123455555 46788765554443
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+...+ +++.. ++++++++++.|.+++
T Consensus 396 ~~~~~Ris~~~--~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 396 SSRYVRLSLIK--TQDDFDQLMYYLKDMV 422 (427)
T ss_dssp CTTEEEEECSS--CHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 34566 88874 8889999998888765
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.023 Score=63.22 Aligned_cols=238 Identities=11% Similarity=-0.011 Sum_probs=132.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +|+|+++++..++.+... . | ......|+++.-.|.+...++...|.+++.+|.|.++-..
T Consensus 93 ~i~--~t~G~~~al~~~~~~l~~----~----------G-d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~ 155 (391)
T 3bwn_A 93 YIV--VGTGSTQLCQAAVHALSS----L----------A-RSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGFDK 155 (391)
T ss_dssp EEE--EEEHHHHHHHHHHHHHHH----T----------S-SSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEESTTCCC
T ss_pred eEE--EeCChHHHHHHHHHHhcC----C----------C-CCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHHHcCC
Confidence 566 688999998877765421 1 1 0011258888889999988888877777777766543210
Q ss_pred HHHHHHHHHhhhhcCCccEEEEe---cCCccc---hhh-h-------------------hcCCCCccEEEEcCcccCCcc
Q psy852 543 GATLRQVMQQDETMGYIPFFVST---TLGTTS---CYR-K-------------------SQGIEYADSFNVNVNKWLLTA 596 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vva---taGTT~---c~~-~-------------------ldGi~~aDSIs~d~HK~L~~P 596 (891)
+ +...+++++ -.|++. |.+ + +......+-+..++||.++.|
T Consensus 156 ---------~----~~k~v~l~~p~NPtG~~~~~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~SK~~g~~ 222 (391)
T 3bwn_A 156 ---------K----GPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHA 222 (391)
T ss_dssp ---------C----SCEEEEEESSCTTTCCCCCCCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEHHHHHSCG
T ss_pred ---------C----CCEEEEECCCCCCCchhHHHHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEechhhcCCC
Confidence 0 111122221 133332 211 0 111122356677899987755
Q ss_pred -cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH------------HhhHHHHH
Q psy852 597 -FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG------------LSGLQKYI 663 (891)
Q Consensus 597 -~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG------------~~G~~~~i 663 (891)
.-+|++++.++..+. .+.....+. .+ ....+.++++...+. ...+++..
T Consensus 223 GlRiG~~~~~~~~l~~-~l~~~~~~~-----------~~------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 284 (391)
T 3bwn_A 223 GSRIGWALVKDKEVAK-KMVEYIIVN-----------SI------GVSKESQVRTAKILNVLKETCKSESESENFFKYGR 284 (391)
T ss_dssp GGCEEEEEECCHHHHH-HHHHHHHHH-----------HS------SCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHH
T ss_pred ccceEEEEecCHHHHH-HHHHHhccc-----------cc------CCCHHHHHHHHHHHhCcchhccccccHHHHHHHHH
Confidence 336888875443322 121100000 00 011233333333332 23466677
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCCCce-------------eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISNDVRL-------------GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~~~~-------------~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
+...++++++.+.|++.+++++..+... ..+++++... +.+...|.+.|+.+..+...
T Consensus 285 ~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~---------~~~~~~l~~~gV~v~pg~~f 355 (391)
T 3bwn_A 285 EMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE---------TDLVSELRRHKVMSRAGERC 355 (391)
T ss_dssp HHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS---------CCHHHHHHHTTEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH---------HHHHHHHHHCCEEEccCCCC
Confidence 7778889999999998877776543211 1466666421 24556677889886655544
Q ss_pred c-CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 E-QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ~-g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
. +...+ ++++. ++++++++++.|++++
T Consensus 356 g~~~~~iRis~~~--~~e~i~~~~~~L~~~~ 384 (391)
T 3bwn_A 356 GSDKKHVRVSMLS--REDVFNVFLERLANMK 384 (391)
T ss_dssp TCCTTEEEEESCS--CHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 2 24456 88873 8999999999887654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.31 Score=55.81 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=85.6
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
-|-+++. |.+++-++.|+++.|++. .+.+ .+... ..|+. +-+..+...-++|+.+-.+++.+
T Consensus 288 PDivt~g--K~lggg~P~~av~~~~~i--~~~~--~~~~~-----------~~Tf~-gnpla~aaala~L~~i~~~~l~~ 349 (456)
T 4atq_A 288 PDIITMA--KGIAGGLPLSAITGRADL--LDAV--HPGGL-----------GGTYG-GNPVACAAALAAIDTMEQHDLNG 349 (456)
T ss_dssp CSEEEEC--GGGGTTSSCEEEEEEHHH--HTTS--CTTSS-----------CCSSS-SCHHHHHHHHHHHHHHHHTTHHH
T ss_pred Cchhhhh--hcccCcCCceeeEecHHH--Hhcc--cccCC-----------CCCCC-CChHHHHhhHHHHHHHhhccHHH
Confidence 6988886 667666788999998762 1111 11110 11221 22333344445666666666544
Q ss_pred HHHHHHHHHHHHHHHhccC----CC--cEEeCCCc-e-eEEEEEecCCc-chhhhhhHHHHHHHHHhCCcEEEeeccccC
Q psy852 662 YIRRHCELAKLFEGKVRRD----PR--FEISNDVR-L-GLVCFRLRSEN-NLIADQNNRKLLEDINASGRLHMVPASQEQ 732 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~----~~--~eil~~~~-~-~iV~Fr~~~~~-~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g 732 (891)
.+ .++.++|.++|+++ +. ..++.+.+ . .++.+.+.... .+.......++...+.++|++.... .. .
T Consensus 350 ~~---~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~-g~-~ 424 (456)
T 4atq_A 350 RA---RHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTC-GT-Y 424 (456)
T ss_dssp HH---HHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEE-CT-T
T ss_pred HH---HHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEec-CC-C
Confidence 44 44555555555442 11 12222211 1 24555554321 1112345678899999999874322 11 2
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..++ +.+..-+|+++||++++.|++.++
T Consensus 425 ~~~irl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 425 GNVIRLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 2355 776667899999999999988763
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.13 Score=58.83 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=42.3
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG 236 (891)
|++++++.+++.. .....|++--.-.+.|.+-| +++|.++|++||+++.+|=++.|
T Consensus 206 d~~~l~~~l~~~~---~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG 265 (454)
T 4ao9_A 206 DAQTARAQIERHG---PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS 265 (454)
T ss_dssp CHHHHHHHHHHTG---GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred hHHHHHHHHhhcC---CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC
Confidence 6889999887642 22445555444555688888 99999999999999999988743
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.84 Score=52.44 Aligned_cols=160 Identities=10% Similarity=0.011 Sum_probs=83.9
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
-|-+++. |.++.= ++.|+++.+++. .+.+......... ...+.|.. +-+..+...-.+|+.+-.+++.
T Consensus 298 PDi~t~~--K~l~gG~~Pl~av~~~~~i--~~~~~~~~~~~~~------~~hg~T~~-Gnpla~Aaala~L~~i~~~~l~ 366 (473)
T 4e3q_A 298 PDAIISS--KNLTAGFFPMGAVILGPEL--SKRLETAIEAIEE------FPHGFTAS-GHPVGCAIALKAIDVVMNEGLA 366 (473)
T ss_dssp CSEEEEC--GGGGTTSSCCEEEEECHHH--HHHHHHHHHHHSC------CCCCCTTT-TCHHHHHHHHHHHHHHHHSSHH
T ss_pred CChHHhc--ccccCCCCCcccccccHHH--HHHhccccccccc------cccCCCCC-CCcchhhhhhhhhhhhccccHH
Confidence 5877764 766443 677999998762 2222110000000 00011121 1233333334556666666654
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCC-ce-eEEEEEecCCcc-----hhhhhhHHHHHHHHHhCCcEEEeeccccCC
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDV-RL-GLVCFRLRSENN-----LIADQNNRKLLEDINASGRLHMVPASQEQN 733 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~-~iV~Fr~~~~~~-----~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~ 733 (891)
+. ..++.++|.++|+++..-..+.+. .. .++.+.+..... ..-.....++...+.+.|++.. + .+
T Consensus 367 ~~---~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~-~---~g- 438 (473)
T 4e3q_A 367 EN---VRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICR-P---LG- 438 (473)
T ss_dssp HH---HHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECE-E---ET-
T ss_pred HH---HHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEE-e---cC-
Confidence 44 455677777777653211111111 11 244555532210 1112356688899999998732 2 23
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..+ +++...+|++|||++++.|++.+.
T Consensus 439 ~~i~l~PPL~it~~eid~~~~~l~~al~ 466 (473)
T 4e3q_A 439 QSVVLCPPFILTEAQMDEMFDKLEKALD 466 (473)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 345 766667899999999999998874
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.065 Score=60.26 Aligned_cols=90 Identities=13% Similarity=-0.007 Sum_probs=68.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEec-CC-CCcccHHHHHHHHHhhhhcCCcceEEEeec-ccCccccccC---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEP-DD-KNSLRGATLRQVMQQDETMGYIPFFVSTTL-GTTSCCSFDN---LAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~-d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~-Gtt~~GavDp---l~~I~ 218 (891)
|++.+-+-......+...|.+++.||. ++ ++.+|+++|++.+++.. .+.++.++. .+|.||.+-+ +++|+
T Consensus 125 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~~~i~l~~~~~NPTG~~~s~~~~~~l~ 200 (405)
T 3k7y_A 125 LYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIP----NGSSVILQISCYNPCSVNIEEKYFDEII 200 (405)
T ss_dssp EEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSC----SSCEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred EEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCC----CCeEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence 666666666666666778889999998 44 58899999999997531 123555544 5899999855 56778
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|+++++++..|-+|+++.
T Consensus 201 ~~~~~~~~~vi~De~Y~~l~ 220 (405)
T 3k7y_A 201 EIVLHKKHVIIFDIAYQGFG 220 (405)
T ss_dssp HHHHHHCCEEEEEESCTTTS
T ss_pred HHHHHCCeEEEEecCccccc
Confidence 89999999999999996643
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.0014 Score=75.38 Aligned_cols=154 Identities=7% Similarity=-0.091 Sum_probs=80.1
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhcc---CCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV---DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~---~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
.|-++ ..|+++..+.+|+++.+++ +.+.+.. ...+. ..|+.+ -+........+|+.+-.+
T Consensus 293 pDi~t--~sK~lg~G~piG~v~~~~~--i~~~l~~~~~g~~~~-----------~~T~~~-npla~aAa~aaL~~l~~~- 355 (465)
T 2yky_A 293 ADLTT--LGKYIGGGMSFGAFGGRRD--LMERFDPARDGAFAH-----------AGTFNN-NILTMSAGHAALTQIYTR- 355 (465)
Confidence 45554 5699998777888887765 2222211 00010 011111 111111222334444333
Q ss_pred HHHHHHHHHHHHHHHHHHhccC-CCcEEeC--CCceeEEEEEecCCcchh-------hhhhHHHHHHHHHhCCcEEEeec
Q psy852 659 LQKYIRRHCELAKLFEGKVRRD-PRFEISN--DVRLGLVCFRLRSENNLI-------ADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~-~~~eil~--~~~~~iV~Fr~~~~~~~~-------~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
...++..++.++|.++|++. ..+.+.. +..-.++.|.+.+....+ -......+.+.|.++|+++...
T Consensus 356 --~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~- 432 (465)
T 2yky_A 356 --QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPR- 432 (465)
Confidence 35566777888888888764 1222221 223456777664310000 0123557888888899874322
Q ss_pred cccCCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 729 SQEQNDEVFELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 729 ~~~g~~~l~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
... . ++...|++|||+++++|++.+..
T Consensus 433 ~~~---~---~s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 433 GMY---A---LSLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 111 1 33356999999999999987643
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.048 Score=59.68 Aligned_cols=260 Identities=10% Similarity=-0.005 Sum_probs=163.8
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+.. +. .++ .++|++++..++.+.. .+...|+++...|.+...++.+.+
T Consensus 93 l~~~la~~~~~-~~-~i~---~~sGt~a~~~~l~~~~-------------------~~gd~v~~~~~~~~~~~~~~~~~g 148 (399)
T 3tqx_A 93 LEKDISEFLGT-DD-TIL---YSSCFDANGGLFETLL-------------------GPEDAIISDELNHASIIDGIRLCK 148 (399)
T ss_dssp HHHHHHHHHTC-SE-EEE---ESCHHHHHHTTHHHHC-------------------CTTCEEEEETTCCHHHHHHHHSCC
T ss_pred HHHHHHHHHCC-Cc-EEE---ECchHHHHHHHHHHhc-------------------CCCCEEEECCcccHHHHHHHHHcC
Confidence 33445555543 32 333 3456888887765421 123368899999999999999989
Q ss_pred ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--e---cCCccc--------hhhh-----hc------------
Q psy852 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--T---TLGTTS--------CYRK-----SQ------------ 577 (891)
Q Consensus 528 v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--a---taGTT~--------c~~~-----ld------------ 577 (891)
.+++.+|. +|+++|+++|++....+..+.+|+ . ..|++. |.++ +|
T Consensus 149 ~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~ 223 (399)
T 3tqx_A 149 AQRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENG 223 (399)
T ss_dssp SEEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTS
T ss_pred CceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCC
Confidence 99998886 578899999987544322222222 2 344443 4331 11
Q ss_pred -------C-CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHH
Q psy852 578 -------G-IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWF 649 (891)
Q Consensus 578 -------G-i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~ 649 (891)
+ ....|.+..++||++++|.| |+++.+++ .+.........|.... +. -......+..
T Consensus 224 ~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~-~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~ 288 (399)
T 3tqx_A 224 RGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHKE-IIEWLRNRSRPYLFSN----------TV---APVIVATSLK 288 (399)
T ss_dssp CCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECHH-HHHHHHHHCHHHHSSC----------CC---CHHHHHHHHH
T ss_pred CchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCHH-HHHHHHHhCcceeccC----------CC---cHHHHHHHHH
Confidence 1 13568999999999996655 77666543 2222111111221100 00 0111223334
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 650 VIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 650 ~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
+++.+. +++.+..++..++++++.+.|++. ++++. ++..++++|.+.+ .....++.+.|.++|+.+.....
T Consensus 289 ~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~ 359 (399)
T 3tqx_A 289 VLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGD------AQLATNMADHLLQEGIYVVGFSY 359 (399)
T ss_dssp HHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEEC------HHHHHHHHHHHHHTTEECCEECT
T ss_pred HHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC------HHHHHHHHHHHHHCCCEEeeeCC
Confidence 444333 567888889999999999999886 66665 5667788888753 23567888999999987442211
Q ss_pred ---ccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 730 ---QEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 730 ---~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..+...+ ++++..+|++|++++++.|++++.
T Consensus 360 ~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 394 (399)
T 3tqx_A 360 PVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGK 394 (399)
T ss_dssp TTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 2344577 999989999999999999998764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.099 Score=58.51 Aligned_cols=258 Identities=10% Similarity=0.045 Sum_probs=161.7
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+.. +. .+ +.++|+++|..++.+. .+ +.-.|+++...|.++..++.+.
T Consensus 113 ~l~~~la~~~g~-~~--~i--~~~sGs~a~~~al~~l----~~---------------~gd~vl~~~~~h~~~~~~~~~~ 168 (427)
T 2w8t_A 113 EVEQALRDFYGT-TG--AI--VFSTGYMANLGIISTL----AG---------------KGEYVILDADSHASIYDGCQQG 168 (427)
T ss_dssp HHHHHHHHHHTC-SE--EE--EESCHHHHHHHHHHHH----SC---------------TTCEEEEETTCCHHHHHHHHHS
T ss_pred HHHHHHHHHhCC-Cc--eE--EecCcHHHHHHHHHHh----cC---------------CCCEEEECCcccHHHHHHHHHc
Confidence 344555555533 32 23 3557788888776552 11 1235888999999999999988
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe----cCCccc--------hhhh--------------h----
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST----TLGTTS--------CYRK--------------S---- 576 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva----taGTT~--------c~~~--------------l---- 576 (891)
+.+++.+|. +|+++|+++|++... +.+.++++. ..|... |.++ +
T Consensus 169 g~~~~~~~~-----~d~~~le~~l~~~~~-~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g 242 (427)
T 2w8t_A 169 NAEIVRFRH-----NSVEDLDKRLGRLPK-EPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNG 242 (427)
T ss_dssp CSEEEEECT-----TCHHHHHHHHHTSCS-SSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTS
T ss_pred CCeeEEeCC-----CCHHHHHHHHHhccC-CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCC
Confidence 988888874 699999999986321 122222222 234433 4331 1
Q ss_pred ------cCC-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccC-CCccccCCCCCccccCCcccccccccchHHH
Q psy852 577 ------QGI-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD-PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLW 648 (891)
Q Consensus 577 ------dGi-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~-~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW 648 (891)
-++ +.+|.+..++||+++. .| |+++.++. .+ +.+... ..|... .+. -......+.
T Consensus 243 ~~~~~~~~~~~~~di~~~s~sK~~g~-~g-G~v~~~~~-l~-~~l~~~~~~~~~~----------~~~---~~~~~aa~~ 305 (427)
T 2w8t_A 243 RGVYEAQGLEGQIDFVVGTFSKSVGT-VG-GFVVSNHP-KF-EAVRLACRPYIFT----------ASL---PPSVVATAT 305 (427)
T ss_dssp CCHHHHTTCTTCCSEEEEESSSTTCS-CC-EEEEECCT-TG-GGGGGTCHHHHSS----------CCC---CHHHHHHHH
T ss_pred CchHhhcCCCcCCcEEEecchhhhcc-CC-CEEEeCHH-HH-HHHHHhccccccc----------CCC---CHHHHHHHH
Confidence 111 3579999999999984 34 77777543 22 222211 111110 000 012222233
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~ 727 (891)
.+++.+. .+.+..++..+++++|.+.|++. ++++..++ ..++++|.+.+ .....++.+.|.++|+++..+
T Consensus 306 ~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~L~~~Gi~v~~~ 376 (427)
T 2w8t_A 306 TSIRKLM--TAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED------QEQAAMMWQALLDGGLYVNMA 376 (427)
T ss_dssp HHHHHHT--SCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS------HHHHHHHHHHHHHTTEECEEE
T ss_pred HHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECC------HHHHHHHHHHHHHCCeEEeee
Confidence 4444432 24677888899999999999887 78887455 67888898853 234668889999999875433
Q ss_pred cc---ccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 728 AS---QEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 728 s~---~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.. ..+...+ ++++..+|++||+++++.|+++..
T Consensus 377 ~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~ 413 (427)
T 2w8t_A 377 RPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGR 413 (427)
T ss_dssp CTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 21 1234567 999988999999999999998763
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.017 Score=67.78 Aligned_cols=89 Identities=8% Similarity=0.013 Sum_probs=67.1
Q ss_pred EEEecCCCChHHHHHHHHc--CCeEEEEecCCCC--cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHH
Q psy852 144 MAYCSKEAHSCVEKAAMMA--FVRLKILEPDDKN--SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAE 216 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~--~~~v~~V~~d~~g--~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~ 216 (891)
.|++..-+|+....++.+. +.+++.|++++++ .+|+++|++.+... +-+|+++..+|.||.+-+ +++
T Consensus 196 ~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~p~NPtG~~~~~~~l~~ 269 (546)
T 2zy4_A 196 KVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPA------IKIFFCVNPSNPPSVKMDQRSLER 269 (546)
T ss_dssp EEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTT------EEEEEEESSCSSSCBCCCHHHHHH
T ss_pred EEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCC------CeEEEEECCCCCCCccCCHHHHHH
Confidence 4677777888888776543 5788999987654 69999998765332 346666678999999976 556
Q ss_pred HHHHH--HHcCCceeeeccccCCc
Q psy852 217 IGPVA--KEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 217 I~~i~--~~~~~~lHvDaA~GG~~ 238 (891)
|+++| +++|++|.+|.+|+.+.
T Consensus 270 l~~~a~~~~~~~~ii~De~y~~~~ 293 (546)
T 2zy4_A 270 VRNIVAEHRPDLMILTDDVYGTFA 293 (546)
T ss_dssp HHHHHHHTCTTCEEEEECTTGGGS
T ss_pred HHHHHHhccCCcEEEEeCcchhhc
Confidence 77888 78899999999997543
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.14 Score=56.86 Aligned_cols=72 Identities=13% Similarity=-0.041 Sum_probs=49.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++.-+|.+....+...|.+++.+++|.++-- . ..+-+|+++..+|.||.+-+ +|++ ++
T Consensus 121 ~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~----------~-----~~~k~v~l~~p~NPtG~~~~--~l~~--~~ 181 (391)
T 3bwn_A 121 SVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGFD----------K-----KGPYIELVTSPNNPDGTIRE--TVVN--RP 181 (391)
T ss_dssp EEEECSSCCTHHHHHHHTTCBTTEEEEEESTTCC----------C-----CSCEEEEEESSCTTTCCCCC--CCC-----
T ss_pred eEEEcCCCchhHHHHHHHcCCeEEEecCCHHHcC----------C-----CCCEEEEECCCCCCCchhHH--HHHH--Hh
Confidence 4888888999998888877778888888765321 0 12446667888999999986 4544 22
Q ss_pred cC--Cceeeeccc
Q psy852 224 FD--VWLHVDGAY 234 (891)
Q Consensus 224 ~~--~~lHvDaA~ 234 (891)
++ ++|++|.+|
T Consensus 182 ~~~~~~ii~De~y 194 (391)
T 3bwn_A 182 DDDEAKVIHDFAY 194 (391)
T ss_dssp --CCCEEEEECTT
T ss_pred hcCCCEEEEeCCC
Confidence 44 777777777
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.23 Score=56.20 Aligned_cols=249 Identities=9% Similarity=0.040 Sum_probs=154.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+... +.-.|++..-+|.+...++...|.+++.+|.|++| +|
T Consensus 142 ~v~--~t~G~~~al~~~~~~l~~-------------------~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d 199 (448)
T 3aow_A 142 DIM--ITSGSQQALDLIGRVFLN-------------------PGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MK 199 (448)
T ss_dssp EEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-EC
T ss_pred hEE--EeCcHHHHHHHHHHHHcC-------------------CCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CC
Confidence 566 789999999888766411 11247777888889888888889999999998876 99
Q ss_pred HHHHHHHHHhhhhcC-CccE-EEEec----CCccc-----------hhhh-----hc---------C--------CC--C
Q psy852 543 GATLRQVMQQDETMG-YIPF-FVSTT----LGTTS-----------CYRK-----SQ---------G--------IE--Y 581 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g-~ip~-~Vvat----aGTT~-----------c~~~-----ld---------G--------i~--~ 581 (891)
+++|+++|+.+...+ .+-+ +++.+ .|++. |.++ .| | ++ .
T Consensus 200 ~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~ 279 (448)
T 3aow_A 200 VEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEG 279 (448)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTS
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCC
Confidence 999999997321111 2222 23322 45543 3331 11 1 11 1
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH----
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL---- 656 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~---- 656 (891)
.+-...+.+|+++ | ..+|+++.+++ +.+.+.....+ ..++ ...+.++++...+..
T Consensus 280 ~vi~~~S~SK~~~-~GlriG~v~~~~~--l~~~l~~~~~~-----------~~~~------~~~~~q~a~~~~L~~~~~~ 339 (448)
T 3aow_A 280 RVIYLGTFSKILA-PGFRIGWMVGDPG--IIRKMEIAKQS-----------TDLC------TNVFGQVVAWRYVDGGYLE 339 (448)
T ss_dssp CEEEEEESTTTTC-GGGCCEEEEECHH--HHHHHHHHHHH-----------HHSS------CCHHHHHHHHHHHHTTHHH
T ss_pred CEEEEccchhhcc-ccccEEEEEeCHH--HHHHHHHHHHH-----------hcCC------CCHHHHHHHHHHHHhCCHH
Confidence 2346667899998 5 34899988643 22222110000 0000 012333444444432
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc-CC-CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc----
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRR-DP-RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ---- 730 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~-~~-~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~---- 730 (891)
+.+.+..+...++++++.+.|++ .| ++++..+.....++++++.. ....++.++|.++|+++..+...
T Consensus 340 ~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~------~~~~~l~~~l~~~gV~v~pg~~f~~~~ 413 (448)
T 3aow_A 340 KHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDG------IDSKKMLERAIKKGVAYVPGEAFYAHR 413 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTT------CCHHHHHHHHHHTTEECEEGGGGSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCC------CCHHHHHHHHHHCCcEEEcchhhcCCC
Confidence 23445555566788999999986 56 68876555556778887531 13567888898889886655433
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+...+ ++++.. ++++|+++++.|.+++.
T Consensus 414 ~~~~~iRls~~~~-~~e~i~~~~~~L~~~l~ 443 (448)
T 3aow_A 414 DVKNTMRLNFTYV-DEDKIMEGIKRLAETIK 443 (448)
T ss_dssp CCCSEEEEECSSS-CTHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCC-CHHHHHHHHHHHHHHHH
Confidence 234566 888764 89999999999988763
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=1.5 Score=51.16 Aligned_cols=276 Identities=7% Similarity=-0.017 Sum_probs=136.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc--CceEEEecCCCC--
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA--FVRLKILEPDDK-- 538 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~--gv~v~~Vp~d~~-- 538 (891)
+|+ ++.|+++++..++.+...+. +..+...|++..-.++....++.+. +.+++.+|++++
T Consensus 167 ~I~--~t~G~~eal~~~~~~l~~~~--------------l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~ 230 (546)
T 2zy4_A 167 NLF--AVEGGTAAMAYIFESLKLNG--------------LLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLN 230 (546)
T ss_dssp EEE--EEEHHHHHHHHHHHHHHHTT--------------SSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGT
T ss_pred eEE--EECCHHHHHHHHHHHhhhhh--------------cCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccC
Confidence 566 67899999887776532110 0112234677777787777776653 578899998654
Q ss_pred CCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------h--hhh-----hcC---------C------CCc
Q psy852 539 NSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------C--YRK-----SQG---------I------EYA 582 (891)
Q Consensus 539 G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c--~~~-----ldG---------i------~~a 582 (891)
+.+|+++|+++++.. ...+++++ -.|++. | .++ .|. . ...
T Consensus 231 ~~~d~~~l~~~~~~~----~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~ 306 (546)
T 2zy4_A 231 WQYPDSELDKLKDPA----IKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPEN 306 (546)
T ss_dssp TBCCHHHHGGGGSTT----EEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGG
T ss_pred CCCCHHHHHHhhCCC----CeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCC
Confidence 469999998876432 12333332 245543 4 221 111 0 123
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccC---------CCccccCCCCCccc----------cCCcccccccc
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVD---------PLYLQHGHEGAIDY----------RHWGIPLSRRF 642 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~---------~~Yl~~~~e~~~~~----------~~~ti~~SRr~ 642 (891)
+-+..+.+|+++.| .-+|+++..+.+.+....... ..|..-.. ..+.. .......+-..
T Consensus 307 ~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~ 385 (546)
T 2zy4_A 307 TLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLP-DVRSLKFIDRLVADSRAVALNHTAGL 385 (546)
T ss_dssp EEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCS-CGGGCCHHHHHHHHTTTTTTGGGCSS
T ss_pred EEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccc-cccchhhhhhhhhhhHHHHhhccCCC
Confidence 45677899999766 448999887753332211100 01100000 00000 00000000001
Q ss_pred cchHHHH----HH-HHH-HHhhHHH-HHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCC-----cchhh---
Q psy852 643 RSLKLWF----VI-RTY-GLSGLQK-YIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSE-----NNLIA--- 706 (891)
Q Consensus 643 ~aL~lW~----~L-~~l-G~~G~~~-~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~-----~~~~~--- 706 (891)
..+.+.. ++ ..+ ..+.+.+ ..+...+..+.+.+.|. . .+.+ .+++.+ .+.+++... +....
T Consensus 386 s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~wl 462 (546)
T 2zy4_A 386 STPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-M-PPLR-DENAVDYYTLIDLQDVTAKLYGEAFSEWA 462 (546)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-S-SCCC-CTTBCCSEEEEEHHHHHHHHHCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-C-Cccc-CCCCeeEEEEEEHHHhhcccccHHHHHHh
Confidence 1111111 11 111 1133333 33334445666777774 2 2322 234444 456665321 00000
Q ss_pred --h-hhHHHHHHHHHhCCcEEEeecccc-CCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 707 --D-QNNRKLLEDINASGRLHMVPASQE-QNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 707 --d-~ln~~L~~~L~~~G~~~~s~s~~~-g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
+ .....+.+.+.+.|+.+.-+.... +...+ +++. ..++++++++++.|+++...+.
T Consensus 463 ~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 463 VKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp HHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence 0 012346677778898865544332 23456 8886 3478999999999998875443
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=14 Score=42.07 Aligned_cols=75 Identities=11% Similarity=-0.054 Sum_probs=46.2
Q ss_pred eEEEEecCC------CCcccHHHHHHHHHhhhh--cCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeec
Q psy852 165 RLKILEPDD------KNSLRGATLRQVMQQDET--MGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDG 232 (891)
Q Consensus 165 ~v~~V~~d~------~g~id~~~L~~~l~~~~~--~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDa 232 (891)
.+..+|... ...-+.+.+++.++...+ .+..+..|++=-.-.+.|.+-| +++|.++|++||+.+.+|=
T Consensus 188 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DE 267 (456)
T 4atq_A 188 EVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADE 267 (456)
T ss_dssp SEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred cceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecc
Confidence 566676431 122345555555543211 2233455554434445577755 8999999999999999999
Q ss_pred cccCCcc
Q psy852 233 AYAGSSF 239 (891)
Q Consensus 233 A~GG~~~ 239 (891)
.+-|+..
T Consensus 268 V~tG~GR 274 (456)
T 4atq_A 268 VQSGFCR 274 (456)
T ss_dssp TTTTTTT
T ss_pred cccccCC
Confidence 9977653
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=0.028 Score=64.58 Aligned_cols=55 Identities=9% Similarity=-0.038 Sum_probs=41.8
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeecccc
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~G 235 (891)
|+++|++.+++. +..+.+|++.-..+.+|.+-| +++|.++|+++|+++.+|-++.
T Consensus 219 d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 277 (465)
T 2yky_A 219 DVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT 277 (465)
Confidence 789999988742 112345555444445897777 9999999999999999999996
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=89.36 E-value=0.98 Score=50.99 Aligned_cols=91 Identities=13% Similarity=0.044 Sum_probs=61.9
Q ss_pred EEecCCCChHHHHHHHHcCCe-EEEEec--CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVR-LKILEP--DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~-v~~V~~--d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~ 218 (891)
|++++-+-.+-.......|.+ +...+. ++...+|.+.+.+.+.... ....++..+..+|.||.+ +.+++|+
T Consensus 140 V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~---~~~~vll~~~p~NPtG~~~~~~~~~~i~ 216 (420)
T 4h51_A 140 IYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAP---DGSVFILHQCAHNPTGVDPSQEQWNEIA 216 (420)
T ss_dssp EEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSC---SSCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred EEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccC---CCcEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence 555543322222233444544 433332 3457789999998887643 224677778889999998 5567888
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|+++++++..|-+|.|+.
T Consensus 217 ~~~~~~~~~~~~D~~Y~~~~ 236 (420)
T 4h51_A 217 SLMLAKHHQVFFDSAYQGYA 236 (420)
T ss_dssp HHHHHHTCEEEEEESCTTTT
T ss_pred HHHHhcCceEeeehhhhhhc
Confidence 99999999999999997754
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=1.4 Score=49.31 Aligned_cols=59 Identities=5% Similarity=-0.102 Sum_probs=43.9
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN 213 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp 213 (891)
..|+++.-.|.+....+...+.+++. ..+|+++|++.+++. +.+|+++..+|.||.+-+
T Consensus 156 d~Vlv~~P~y~~~~~~~~~~g~~~~~------~~~d~~~l~~~~~~~------~k~v~l~~p~NPtG~~~~ 214 (427)
T 2hox_A 156 SKVVAHAPFYPVFREQTKYFDKKGYV------WAGNAANYVNVSNPE------QYIEMVTSPNNPEGLLRH 214 (427)
T ss_dssp EEEEECSSCCHHHHHHHHHSCBTTEE------EEEEGGGGTTCSCGG------GEEEEEESSCTTTCCCCC
T ss_pred CEEEEeCCCcccHHHHHHHcCCeeee------ecCCHHHHHHhhcCC------ceEEEEcCCCCCcccccH
Confidence 35888888999988888766655542 457888888776543 346677788999999988
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=87.99 E-value=8.6 Score=43.98 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCcc
Q psy852 180 ATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSSF 239 (891)
Q Consensus 180 ~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~~ 239 (891)
++|++.+.+.. ...+..|++=-.-.+-|.+-| +++|.++|++||+.+.+|=.+-|+..
T Consensus 223 ~~l~~~i~~~~--~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGR 284 (473)
T 4e3q_A 223 RELEETIQREG--ADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGR 284 (473)
T ss_dssp HHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSST
T ss_pred HHHHHHHHhhC--CCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCc
Confidence 44555554321 122444554444445566654 88999999999999999999977653
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=10 Score=46.49 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=48.3
Q ss_pred HHHHhccCCCcEEeCCCceeEEEEEecCCc-c-hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHH
Q psy852 673 FEGKVRRDPRFEISNDVRLGLVCFRLRSEN-N-LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLA 749 (891)
Q Consensus 673 L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~-~-~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId 749 (891)
+.+.+++.+.+.-+.. .-.++.+.+.... . ..-+.....+.+.|.++|++.. +. + ..+ +++...+|++|||
T Consensus 742 l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~-p~---g-~~lrl~pp~~~t~e~id 815 (831)
T 4a0g_A 742 LVQQISSHSAVQRVVV-IGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTR-PL---G-NVIYLMCGPCTSPEICR 815 (831)
T ss_dssp HHHHHHHSTTEEEEEE-ETTEEEEEEC---------CHHHHHHHHHHHHTTEECC-CB---T-TEEEEECCTTCCHHHHH
T ss_pred HHHHHhhCCCceeEee-cccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEE-ec---C-CEEEEECCCCCCHHHHH
Confidence 4455555555433321 1234555553220 0 0012345678889999998732 21 2 456 8888888999999
Q ss_pred HHHHHHHHHH
Q psy852 750 YKRSFFVRML 759 (891)
Q Consensus 750 ~li~~L~ei~ 759 (891)
++++.|++.+
T Consensus 816 ~~~~~l~~~l 825 (831)
T 4a0g_A 816 RLLTKLYKRL 825 (831)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=82.75 E-value=0.49 Score=52.72 Aligned_cols=264 Identities=8% Similarity=0.017 Sum_probs=136.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccc-eEEEecccchHHHHHHH----H--HcCceEEEecC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSK-LMAYCSKEAHSCVEKAA----M--MAFVRLKILEP 535 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~-~vI~~S~~aH~Sv~Kaa----~--l~gv~v~~Vp~ 535 (891)
+|+ +|+|+++++..++.+... .........+.+ .... -+|++..-+|.....++ . -.+..++.+|+
T Consensus 108 ~i~--~t~G~t~al~~~~~~l~~----~gd~~~~~~~~~-~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (444)
T 3if2_A 108 NIA--LTNGSQNAFFYLFNLFGG----AFVNEHSQDKES-KSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTH 180 (444)
T ss_dssp GEE--EESSHHHHHHHHHHHSSE----EEECC--------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEE
T ss_pred HEE--EecCcHHHHHHHHHHHhC----CCcccccccccc-ccccceEEEeCCCCccchhhcccccchhhccCceEEeccc
Confidence 566 789999999988766421 000000000000 0001 23443244444443322 1 23567888888
Q ss_pred CC-CC----CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC------------
Q psy852 536 DD-KN----SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI------------ 579 (891)
Q Consensus 536 d~-~G----~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi------------ 579 (891)
|+ +| .+|+++|+++++.... +...++++ +..|++. |.++ +|.+
T Consensus 181 ~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 259 (444)
T 3if2_A 181 DGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSD 259 (444)
T ss_dssp TTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSC
T ss_pred ccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccc
Confidence 76 44 7999999998643211 11122332 2356554 3331 1211
Q ss_pred -----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH
Q psy852 580 -----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 580 -----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l 654 (891)
...+-...++||+++....+|+++...+ +.+.+.....+ .+. ....+.++++...+
T Consensus 260 ~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~--l~~~~~~~~~~-------------~~~----~~~~~~~~a~~~~l 320 (444)
T 3if2_A 260 AHLNWDNNTILCFSLSKIGLPGMRTGIIVADAK--VIEAVSAMNAV-------------VNL----APTRFGAAIATPLV 320 (444)
T ss_dssp CCCCCCTTEEEEEESTTTTCGGGCCEEEECCHH--HHHHHHHHHHH-------------HHS----SCCCHHHHHHHHHH
T ss_pred ccccCCCCEEEEechhhccCCCCceEEEEECHH--HHHHHHHHHHh-------------ccC----CCChHHHHHHHHHH
Confidence 2345678899998655577887765432 22222110000 000 01123333333333
Q ss_pred HHhhHHH-----HHHHHHHHHHHHHHHhcc-CC--CcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe
Q psy852 655 GLSGLQK-----YIRRHCELAKLFEGKVRR-DP--RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV 726 (891)
Q Consensus 655 G~~G~~~-----~i~~~~~lA~~L~~~L~~-~~--~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s 726 (891)
....+.+ ..++..++.+++.+.|++ ++ ++++..+.....+++++... ....+.+.+.|.+.|+.+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~l~~~l~~~gi~v~~ 395 (444)
T 3if2_A 321 ANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDL-----PISTLDLYERLKAKGTLIVP 395 (444)
T ss_dssp HTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTC-----SSCHHHHHHHHHHTTEECEE
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCC-----CCCHHHHHHHHHHCCeEEec
Confidence 3222222 222334455566666654 34 35565555556777777532 12356788889889988665
Q ss_pred ecccc----------CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 727 PASQE----------QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 727 ~s~~~----------g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+..+. ....+ ++++. ++++|+++++.|++++.
T Consensus 396 g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~ 438 (444)
T 3if2_A 396 SEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVR 438 (444)
T ss_dssp GGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHH
Confidence 54431 12456 88876 99999999999998774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 891 | ||||
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 4e-50 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 5e-42 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 1e-27 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 7e-05 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 5e-16 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 2e-15 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 2e-11 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 1e-12 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 4e-05 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 4e-05 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 8e-11 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 2e-07 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 0.003 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 181 bits (461), Expect = 4e-50
Identities = 130/327 (39%), Positives = 187/327 (57%), Gaps = 45/327 (13%)
Query: 442 IRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEG 501
+ ++ +L E + + ++ SASE V +LAAR + + +L+ P + +G
Sbjct: 119 MDWLGKMLQLPEAFLAGEAGEGGGV-IQGSASEATLVALLAARTKVVRRLQAASPGLTQG 177
Query: 502 VLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPF 561
+L KL+AY S +AHS VE+A ++ V+LK + D K ++R + L++ +++D+ G IPF
Sbjct: 178 AVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPF 237
Query: 562 FVSTTLGTTSC------------------------------------YRKSQGIEYADSF 585
FV TLGTTSC G+E+ADSF
Sbjct: 238 FVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSF 297
Query: 586 NVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGA---IDYRHWGIPLSRRF 642
N N +KWLL FD S +WV R LT A +DP+YL+H H+G+ DYRHW +PL RRF
Sbjct: 298 NFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRF 357
Query: 643 RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN 702
RSLK+WFV R YG+ GLQ YIR+H +L+ FE V +DPRFE+ +V LGLVCFRL+ +
Sbjct: 358 RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSD 417
Query: 703 NLIADQNNRKLLEDINASGRLHMVPAS 729
L N LLE IN++ ++H+VP
Sbjct: 418 GL-----NEALLERINSARKIHLVPCR 439
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 158 bits (400), Expect = 5e-42
Identities = 118/265 (44%), Positives = 159/265 (60%), Gaps = 30/265 (11%)
Query: 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVL 63
+ + VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET+++
Sbjct: 60 VEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMM 119
Query: 64 DWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVL 123
DWLGK + LPE FL G S ++ L
Sbjct: 120 DWLGKMLQLPEAFLAGEAGEGGGVIQ--------------------GSA---SEATLVAL 156
Query: 124 T-------RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNS 176
R + P + +G +L KL+AY S +AHS VE+A ++ V+LK + D K +
Sbjct: 157 LAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFA 216
Query: 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAG 236
+R + L++ +++D+ G IPFFV TLGTTSCCSFDNL E+GP+ E D+WLHVD AYAG
Sbjct: 217 MRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAG 276
Query: 237 SSFICPEFRPFMNGKTSFDNLHLSP 261
S+FICPEFR +NG D+ + +P
Sbjct: 277 SAFICPEFRHLLNGVEFADSFNFNP 301
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 115 bits (288), Expect = 1e-27
Identities = 84/144 (58%), Positives = 105/144 (72%), Gaps = 3/144 (2%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
D+WLHVD AYAGS+FICPEFR +NG+E+ADSFN N +KWLL FD S +WV R LT
Sbjct: 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLT 323
Query: 391 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447
A +DP+YL+H H+G+ DYRHW +PL RRFRSLK+WFV R YG+ GLQ YIR+H +
Sbjct: 324 GAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQ 383
Query: 448 LAKLFEGKVRRDPRFEISNDVRSS 471
L+ FE V +DPRFE+ +V
Sbjct: 384 LSHEFEAFVLQDPRFEVCAEVTLG 407
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 43.7 bits (102), Expect = 7e-05
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPASFE 820
+ + + LGLVCFRL+ + + N LLE IN++ ++H+VP
Sbjct: 391 FVLQDPRFEVCAEVTLGLVCFRLKGSDGL-----NEALLERINSARKIHLVPCRLR 441
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 79.5 bits (195), Expect = 5e-16
Identities = 37/278 (13%), Positives = 75/278 (26%), Gaps = 58/278 (20%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
+SE + +A + + +++ D C K A V
Sbjct: 122 IGSSEACMLGGMAMKWRWRKRMEAAGKPTD-------KPNLVCGPVQICWHKFARYWDVE 174
Query: 530 LKILEPDDKN-SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC---------------- 572
L+ + + + + ++ T+G +P F T G
Sbjct: 175 LREIPMRPGQLFMDPKRMIEACDEN-TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTG 233
Query: 573 ----------------------YRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
+ S + + +K+ L + D L
Sbjct: 234 IDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEAL 293
Query: 611 TSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSL-KLWFVIRTYGLSGLQKYIRRHCEL 669
LV + YL + I SR + ++ G G K ++
Sbjct: 294 PQELVFNVDYLGG------QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQV 347
Query: 670 AKLFEGKVRRDPRFEI----SNDVRLGLVCFRLRSENN 703
A ++ + +E D + VCF+L+ +
Sbjct: 348 AAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED 385
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 77.2 bits (189), Expect = 2e-15
Identities = 19/237 (8%), Positives = 51/237 (21%), Gaps = 35/237 (14%)
Query: 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTP 89
+ ++ +I P ++ ++ + P
Sbjct: 66 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKN------------ 113
Query: 90 NDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVLTRGQKKIHPFVDEGVLLSKLMAY 146
G S ++ + + ++ +
Sbjct: 114 ------------------GQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNL 155
Query: 147 CSKEAHSCVEKAAMMAFVRLKILEPDDKN-SLRGATLRQVMQQDETMGYIPFFVSTTLGT 205
C K A V L+ + + + + ++ F V+ T
Sbjct: 156 VCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNY 215
Query: 206 TSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSF-ICPEFRPFMNGKTSFDNLHLSP 261
+ + D+ +H+D A G + ++ S
Sbjct: 216 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASG 272
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 64.9 bits (157), Expect = 2e-11
Identities = 28/270 (10%), Positives = 61/270 (22%), Gaps = 73/270 (27%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE--------- 318
+SE + ++ + + +++ D C
Sbjct: 122 IGSSEACMLGGMAMKWRWRKRMEAAGKPTD-------KPNLVCGPVQICWHKFARYWDVE 174
Query: 319 ----------TRGHIQSYRDAI-------------------------------------F 331
+ +A
Sbjct: 175 LREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGI 234
Query: 332 DVWLHVDGAYAGSSF-ICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
D+ +H+D A G + + S + + +K+ L + D L
Sbjct: 235 DIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALP 294
Query: 391 SALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSL-KLWFVIRTYGLSGLQKYIRRHCELA 449
LV + YL + I SR + ++ G G K ++A
Sbjct: 295 QELVFNVDYLGG------QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 348
Query: 450 KLFEGKVRRDPRFEI--SNDVRSSASECIF 477
++ + +E + F
Sbjct: 349 AYLADEIAKLGPYEFICTGRPDEGIPAVCF 378
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 68.8 bits (167), Expect = 1e-12
Identities = 45/308 (14%), Positives = 85/308 (27%), Gaps = 66/308 (21%)
Query: 6 HFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDW 65
S H SGN L D A G L +L+
Sbjct: 75 RTYSKIHEELSSGFCHGIGRSGN-----LVDPQPKASGASIMYA--------LTNKILES 121
Query: 66 LGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTR 125
K +GL + P + + L+
Sbjct: 122 FFKQLGLNVHAIATPIST--------------------------------GMSISLCLSA 149
Query: 126 GQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATL 182
+KK + +H KA + ++++E D+ + +
Sbjct: 150 ARKKYG----------SNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDI 199
Query: 183 RQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICP 242
++++ +G P +ST S D + EI + + +D+ ++GAYA +
Sbjct: 200 ENAIKKEIELGNRPCVLSTLTFFPPRNSDD-IVEIAKICENYDIPHIINGAYAIQNNYYL 258
Query: 243 EFRPFMNGKTSFDNLHLSP-IWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVL 301
E K D + S P + S A+ I ++ +P
Sbjct: 259 EK-LKKAFKYRVDAVVSSSDKNLLTP-----IGGGLVYSTDAEFIKEISLSYPGRASATP 312
Query: 302 LSKLMAYC 309
+ +
Sbjct: 313 VVNTLVSL 320
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 44.5 bits (104), Expect = 4e-05
Identities = 28/232 (12%), Positives = 57/232 (24%), Gaps = 59/232 (25%)
Query: 267 PSSASECIFVCMLSARAQAISK----LKKIHPFVDEGVLLSKLM------AYCSKEAHSC 316
P S I +C+ +AR + S H + V + +
Sbjct: 136 PISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVP 195
Query: 317 VET-RGHIQSYRDAI-----------------------------FDVWLHVDGAYAGSSF 346
VE I+ + +D+ ++GAYA +
Sbjct: 196 VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNN 255
Query: 347 ICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG 406
E D+ + +K LLT ++ D
Sbjct: 256 YYLEK-LKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA----------------EFIK 298
Query: 407 AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR 458
I + + + + + G + ++ KL + +
Sbjct: 299 EISLSYP--GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND 348
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 44.5 bits (104), Expect = 4e-05
Identities = 32/274 (11%), Positives = 78/274 (28%), Gaps = 44/274 (16%)
Query: 471 SASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530
S I +C+ AAR + S + +H KA + +
Sbjct: 138 STGMSISLCLSAARKKYGSN-----------------VVIYPYASHKSPIKAVSFVGMNM 180
Query: 531 KILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRK--SQGIEYADSF 585
+++E D+ + + ++++ +G P +ST + + +++
Sbjct: 181 RLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENY 240
Query: 586 NVNVN-------------KWLLTAFDSSCLWVA-DRYKLTSALVVDPLYLQHGHEGAIDY 631
++ + L AF V K + L E +
Sbjct: 241 DIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEI 300
Query: 632 RHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE---GKVRRDPRFEISND 688
+ + + + G + ++ KL + + + + +
Sbjct: 301 SLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV 360
Query: 689 VRLGLVCFRLRSENNLIADQNNRKLLEDINASGR 722
C + S+ IA L ++ +G
Sbjct: 361 ESPIASCISVNSDPVEIA-----AKLYNLRVTGP 389
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.0 bits (152), Expect = 8e-11
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 1/117 (0%)
Query: 146 YCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG-YIPFFVSTTLG 204
+ K+ + A ++E + L+ V + + +G + +T
Sbjct: 144 IWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTA 203
Query: 205 TTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSP 261
+ D L E+ + +D+ V+ AY S C D S
Sbjct: 204 CFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSL 260
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.9 bits (123), Expect = 2e-07
Identities = 21/185 (11%), Positives = 49/185 (26%), Gaps = 6/185 (3%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+D+ V+ AY S C + D+F +++K + + + + +
Sbjct: 223 YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQ 282
Query: 391 SALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAK 450
+ +Y LS + R L +++ E
Sbjct: 283 D---ISKMYPGRASASPS-LDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHN 338
Query: 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAAR--AQAISKLKKIHPFVDEGVLLSKLM 508
+ +P V L + + +S + + + V
Sbjct: 339 ERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFR 398
Query: 509 AYCSK 513
+ S
Sbjct: 399 GFMSH 403
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.4 bits (88), Expect = 0.003
Identities = 21/250 (8%), Positives = 56/250 (22%), Gaps = 57/250 (22%)
Query: 475 CIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 534
+ +C L R + I + K+ + A ++E
Sbjct: 125 SLTLCFLTLRHKRPKAKYII----------------WPRIDQKSCFKSMVTAGFEPVVIE 168
Query: 535 PDDKNSLRGATLRQVMQQDETMG-YIPFFVSTTLGTT----------------------- 570
+ L+ V + + +G + +T
Sbjct: 169 NVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHV 228
Query: 571 -------------SCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD 617
++ + D+F +++K + + + + + +
Sbjct: 229 VNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD---IS 285
Query: 618 PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKV 677
+Y LS + R L +++ E +
Sbjct: 286 KMYPGRASASPS-LDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQT 344
Query: 678 RRDPRFEISN 687
+P
Sbjct: 345 PHNPISLAMT 354
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 891 | |||
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 100.0 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.95 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.93 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.88 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.88 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.87 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.8 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.8 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.8 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.77 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.75 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.73 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.7 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.68 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.59 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.53 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.51 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.46 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.4 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.38 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.31 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.3 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.28 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.24 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.04 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 98.91 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 98.87 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 98.81 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.8 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 98.79 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 98.79 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 98.78 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 98.76 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.74 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 98.74 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.71 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 98.67 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 98.65 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 98.65 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 98.61 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.6 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 98.59 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 98.57 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 98.56 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 98.55 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 98.49 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 98.44 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 98.44 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 98.43 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 98.42 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 98.41 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.4 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 98.4 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.33 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 98.31 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 98.28 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.2 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 98.12 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 98.11 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 98.07 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 98.05 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 98.03 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 98.01 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 97.99 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 97.97 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 97.92 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 97.92 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 97.84 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 97.79 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 97.77 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 97.76 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 97.74 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 97.73 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 97.72 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 97.69 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 97.65 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 97.61 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 97.52 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 97.5 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 97.45 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 97.45 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 97.43 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 97.43 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 97.4 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 97.34 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 97.31 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 97.29 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 97.29 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 97.29 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 97.22 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 97.19 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 97.17 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 97.16 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 97.15 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 97.15 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 97.14 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 97.02 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 96.98 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 96.97 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 96.95 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 96.91 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 96.89 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 96.89 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 96.86 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 96.82 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 96.8 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 96.63 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 96.58 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 96.52 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 96.43 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 96.41 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 96.26 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 96.19 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 96.16 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 96.14 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 96.13 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 96.13 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 96.07 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 96.05 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 96.0 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 95.93 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 95.8 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 95.78 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 95.7 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 95.61 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 95.3 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 95.3 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 95.23 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 95.17 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 95.1 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 95.03 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 94.99 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 94.89 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 94.88 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 94.87 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 94.84 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 94.55 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 94.54 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 94.5 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 94.23 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 93.91 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 93.74 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 93.55 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 93.11 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 92.5 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 92.06 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 91.94 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 91.9 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 90.96 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 90.73 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 88.75 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 88.44 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 88.31 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 87.11 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 85.55 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 85.4 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 80.07 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=7.3e-66 Score=594.67 Aligned_cols=405 Identities=49% Similarity=0.913 Sum_probs=343.8
Q ss_pred hhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCC-CC
Q psy852 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYP-PQ 82 (891)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~-~~ 82 (891)
|.+.|+|+++||+||||++|++++.++++++|+++++++|+|+.+|+.||++++||+++++||++|+|||+++.... ..
T Consensus 60 ~~~~i~~~~~~~~~P~f~~~~~~~~~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~ 139 (476)
T d1js3a_ 60 VEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGE 139 (476)
T ss_dssp HHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCS
T ss_pred HHHHHhCCCCCCCCCCeeEeCCCCCCHHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999998764321 11
Q ss_pred CCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccc-----cCCccccccccCCeEEEecCCCChHHHH
Q psy852 83 GKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKK-----IHPFVDEGVLLSKLMAYCSKEAHSCVEK 157 (891)
Q Consensus 83 ~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~-----~~~~~~~g~~~~~~~v~~S~~~H~Sv~k 157 (891)
+. |.+++|||. +|+..+.+||++.. ..+...++...+++++|+|+++|||+.|
T Consensus 140 ~~---------------------G~~~~Ggs~-anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~k 197 (476)
T d1js3a_ 140 GG---------------------GVIQGSASE-ATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVER 197 (476)
T ss_dssp CE---------------------EEEESCHHH-HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHH
T ss_pred CC---------------------ceECCcHHH-HHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHH
Confidence 11 224678875 67778888887631 1222333344578999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCC
Q psy852 158 AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 158 aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
++.+.|..++.||+|++|+||+++|+++|++++++|..|++|++|+|||++|++|||++|+++|++|++|+||||||||+
T Consensus 198 a~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~ 277 (476)
T d1js3a_ 198 AGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGS 277 (476)
T ss_dssp HHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred HHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchh
Confidence 99888888999999999999999999999999999999999999999999999999999999999998877777777776
Q ss_pred ccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccc
Q psy852 238 SFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 317 (891)
Q Consensus 238 ~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (891)
.++++
T Consensus 278 ~~~~~--------------------------------------------------------------------------- 282 (476)
T d1js3a_ 278 AFICP--------------------------------------------------------------------------- 282 (476)
T ss_dssp GGGST---------------------------------------------------------------------------
T ss_pred hhhhc---------------------------------------------------------------------------
Confidence 65543
Q ss_pred ccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCc
Q psy852 318 ETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP 397 (891)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~ 397 (891)
+.+++++|++.||||++|+|||+++||+||++++|++..+..++...+
T Consensus 283 --------------------------------~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~ 330 (476)
T d1js3a_ 283 --------------------------------EFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDP 330 (476)
T ss_dssp --------------------------------TTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC---
T ss_pred --------------------------------chhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcCh
Confidence 444667888899999999999999999999999999877665554444
Q ss_pred cccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHH
Q psy852 398 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIF 477 (891)
Q Consensus 398 ~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~ 477 (891)
.|+.....
T Consensus 331 ~~~~~~~~------------------------------------------------------------------------ 338 (476)
T d1js3a_ 331 VYLKHSHQ------------------------------------------------------------------------ 338 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccc------------------------------------------------------------------------
Confidence 44432100
Q ss_pred HHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcC
Q psy852 478 VCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG 557 (891)
Q Consensus 478 ~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g 557 (891)
T Consensus 339 -------------------------------------------------------------------------------- 338 (476)
T d1js3a_ 339 -------------------------------------------------------------------------------- 338 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc
Q psy852 558 YIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP 637 (891)
Q Consensus 558 ~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~ 637 (891)
+....+++.+++++
T Consensus 339 ------------------------------------------------------------------~~~~~~~~~~~~~~ 352 (476)
T d1js3a_ 339 ------------------------------------------------------------------GSGLITDYRHWQLP 352 (476)
T ss_dssp -------------------------------------------------------------------CCSCCCGGGSSSC
T ss_pred ------------------------------------------------------------------cccccccccccccc
Confidence 00022345678999
Q ss_pred ccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHH
Q psy852 638 LSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDI 717 (891)
Q Consensus 638 ~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L 717 (891)
+||+++++++|++|+.+|.+||++++++.+++|++|.+.|++.|+||++.+|.+++||||+++. |.+|+++.++|
T Consensus 353 ~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~-----d~~n~~l~~~l 427 (476)
T d1js3a_ 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS-----DGLNEALLERI 427 (476)
T ss_dssp SCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSC-----HHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCC-----hHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999876 78999999999
Q ss_pred HhCCcEEEeeccccCCeEE-EEec-CCCCHHHHHHHHHHHHHHHH
Q psy852 718 NASGRLHMVPASQEQNDEV-FELQ-ERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 718 ~~~G~~~~s~s~~~g~~~l-~sv~-~~tT~edId~li~~L~ei~~ 760 (891)
+++|.+|++++.++++.++ +++. +.||++|||.+++.|++++.
T Consensus 428 ~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~ 472 (476)
T d1js3a_ 428 NSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA 472 (476)
T ss_dssp HHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 8865 67999999999999999985
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-44 Score=407.14 Aligned_cols=363 Identities=13% Similarity=0.087 Sum_probs=276.0
Q ss_pred HHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccc
Q psy852 32 SVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGG 111 (891)
Q Consensus 32 ~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~g 111 (891)
..++.+++..+|.|...++.+|++++||.++++|||+|+|+|..+.. .+. |.+|+|
T Consensus 68 ~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~---~~~---------------------G~~t~G 123 (450)
T d1pmma_ 68 ENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNG---QAV---------------------GTNTIG 123 (450)
T ss_dssp HHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTS---CCS---------------------EEEESS
T ss_pred HHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccC---CCc---------------------CeeeCc
Confidence 45789999999999999999999999999999999999999976421 111 345789
Q ss_pred hhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhh
Q psy852 112 GVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDE 190 (891)
Q Consensus 112 Gt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~ 190 (891)
||++ |+..+..||.+.+.. ...+|. .....+++|..+|+|+.|+|++.|.+++.|++++ +|+||+++|+++++++
T Consensus 124 gSeA-~~~a~~aar~~~~~~-~~~~g~-~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~- 199 (450)
T d1pmma_ 124 SSEA-CMLGGMAMKWRWRKR-MEAAGK-PTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN- 199 (450)
T ss_dssp HHHH-HHHHHHHHHHHHHHH-HHHHTC-CCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTT-
T ss_pred hHHH-HHHHHHHHHHHHHHH-hhhcCC-CCCCceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhC-
Confidence 9865 555555666642110 001111 1233467788899999999999899999999986 5999999999999876
Q ss_pred hcCCcceEEEeecccCccccccCHHHHHHHHHH------cCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccc
Q psy852 191 TMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE------FDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWY 264 (891)
Q Consensus 191 ~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~------~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~ 264 (891)
+++|++|+|||.+|++|||++|+++|++ +|+|+||||||||+.+.
T Consensus 200 -----t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p------------------------ 250 (450)
T d1pmma_ 200 -----TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAP------------------------ 250 (450)
T ss_dssp -----EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH------------------------
T ss_pred -----ceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceee------------------------
Confidence 5899999999999999999999998765 45555555555444321
Q ss_pred cCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCc
Q psy852 265 ERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGS 344 (891)
Q Consensus 265 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 344 (891)
T Consensus 251 -------------------------------------------------------------------------------- 250 (450)
T d1pmma_ 251 -------------------------------------------------------------------------------- 250 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHH
Q psy852 345 SFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSL 424 (891)
Q Consensus 345 ~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l 424 (891)
+++..++...+++.|||+++|+|||+++|++||++++|++..+...+...+.|+.
T Consensus 251 --~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~----------------------- 305 (450)
T d1pmma_ 251 --FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLG----------------------- 305 (450)
T ss_dssp --HHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETT-----------------------
T ss_pred --eechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCC-----------------------
Confidence 3334445567888999999999999999999999999987544322211111110
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccc
Q psy852 425 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLL 504 (891)
Q Consensus 425 ~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~ 504 (891)
T Consensus 306 -------------------------------------------------------------------------------- 305 (450)
T d1pmma_ 306 -------------------------------------------------------------------------------- 305 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccchhhhhcCCCCccE
Q psy852 505 SKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADS 584 (891)
Q Consensus 505 ~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~~ldGi~~aDS 584 (891)
T Consensus 306 -------------------------------------------------------------------------------- 305 (450)
T d1pmma_ 306 -------------------------------------------------------------------------------- 305 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHhhHHHHH
Q psy852 585 FNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYI 663 (891)
Q Consensus 585 Is~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~G~~~~i 663 (891)
.++.++++++||+ +.++++|++++.+|.+||++++
T Consensus 306 --------------------------------------------~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~ 341 (450)
T d1pmma_ 306 --------------------------------------------GQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQ 341 (450)
T ss_dssp --------------------------------------------EEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------CCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHH
Confidence 0112346677887 4567899999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCC----CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE---EEeeccccCCeEE
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISND----VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL---HMVPASQEQNDEV 736 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~----~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~---~~s~s~~~g~~~l 736 (891)
++.++++++|.++|++.++|+++.+ +.+++|||++.+.....+ ....+..+|.++|++ |..+.......++
T Consensus 342 ~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~--~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~l 419 (450)
T d1pmma_ 342 NASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGY--TLYDLSERLRLRGWQVPAFTLGGEATDIVVM 419 (450)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSS--CHHHHHHHHHTTTCBCCEEECCTTCTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCC--CHHHHHHHHHHcCCeeeccCcCCCcCCcEEE
Confidence 9999999999999999999999753 457899999986532222 234688899999976 3444556667778
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
+++++++|++++|+|+++|++.++.+
T Consensus 420 Rvvv~~~~t~e~~d~lv~dl~~~v~~l 446 (450)
T d1pmma_ 420 RIMCRRGFEMDFAELLLEDYKASLKYL 446 (450)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998543
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.95 E-value=5.1e-28 Score=277.63 Aligned_cols=295 Identities=33% Similarity=0.532 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHhhccCCcc------ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccch
Q psy852 443 RRHCELAKLFEGKVRRDPRF------EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH 516 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~------eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH 516 (891)
.-+.+..+++.+.+.--+++ +--+-+++|||++|++++++||+++.++.+.......++...+++++|+|+++|
T Consensus 113 ~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H 192 (476)
T d1js3a_ 113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH 192 (476)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEeccccc
Confidence 33445666777777532211 122347899999999999999999887755333222333345789999999999
Q ss_pred HHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh---------
Q psy852 517 SCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR--------- 574 (891)
Q Consensus 517 ~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~--------- 574 (891)
||+.|||.++|+.++.||+|++|+||+++|+++|++++++|..|++|++++|||. |.+
T Consensus 193 ~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDA 272 (476)
T d1js3a_ 193 SSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272 (476)
T ss_dssp HHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEec
Confidence 9999999999999999999999999999999999999999999999999999998 322
Q ss_pred --------------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccc
Q psy852 575 --------------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR 640 (891)
Q Consensus 575 --------------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SR 640 (891)
.++|+++||||++|+||||++|++||++++|++..+..++...+.|+........... ....
T Consensus 273 A~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 348 (476)
T d1js3a_ 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLIT----DYRH 348 (476)
T ss_dssp TTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCC----CGGG
T ss_pred ccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccccccc----cccc
Confidence 3567889999999999999999999999999998887777777777654332110000 0000
Q ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhC
Q psy852 641 RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINAS 720 (891)
Q Consensus 641 r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~ 720 (891)
-.++. +. +. +.+. +.-.+..-
T Consensus 349 ----------------------------------------~~~~~-sr-----------~~-----~al~--lw~~l~~~ 369 (476)
T d1js3a_ 349 ----------------------------------------WQLPL-GR-----------RF-----RSLK--MWFVFRMY 369 (476)
T ss_dssp ----------------------------------------SSSCS-CC-----------CC-----THHH--HHHHHHHH
T ss_pred ----------------------------------------ccccc-ch-----------hh-----HHHH--HHHHHHHH
Confidence 00000 00 00 1121 11111111
Q ss_pred CcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCcccccCCCcccceEEeecccchhhhhhhhH
Q psy852 721 GRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNR 800 (891)
Q Consensus 721 G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~~~~~~~~gl~~~r~~~~~~~~~~~~~~ 800 (891)
..+-+.+.++..-++++.+.+.+++.+.|++..++.+++|||||++. +..++
T Consensus 370 -----------------------G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~-----d~~n~ 421 (476)
T d1js3a_ 370 -----------------------GVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS-----DGLNE 421 (476)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSC-----HHHHH
T ss_pred -----------------------hHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCC-----hHHHH
Confidence 23456666666677777888999999999999999999999999874 45677
Q ss_pred HHHHHHHhhccccCCcccHHHHHhhhcccccccceEEEEec
Q psy852 801 KLLEDINASGRLHMVPASFELQERKRKDDLAYKRSFFVRMV 841 (891)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (891)
+++++++.+|+.+..+.. .+..+++|++
T Consensus 422 ~l~~~l~~~G~~~~s~t~-------------~~g~~~lR~~ 449 (476)
T d1js3a_ 422 ALLERINSARKIHLVPCR-------------LRGQFVLRFA 449 (476)
T ss_dssp HHHHHHHHHTSCBCEEEE-------------ETTEEEEEEE
T ss_pred HHHHHHHhcCCEEEeeee-------------ECCEEEEEEE
Confidence 899999999988876532 2344778875
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=4.8e-26 Score=257.27 Aligned_cols=238 Identities=13% Similarity=0.078 Sum_probs=180.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCc
Q psy852 54 SCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPF 133 (891)
Q Consensus 54 ~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~ 133 (891)
....||.++++|+++++|++.... +.+++||+.+++...+..+|.+.
T Consensus 91 ~~~~le~~~~~~~~~l~g~~~~~~----------------------------~~~~~~~t~~~~~~~l~a~~~~~----- 137 (445)
T d3bc8a1 91 LLNKITNSLVLNVIKLAGVHSVAS----------------------------CFVVPMATGMSLTLCFLTLRHKR----- 137 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCE----------------------------EEEESSCHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhCCCcccC----------------------------ccccccchHHHHHHHHHHHHHhC-----
Confidence 457899999999999999987531 22356776444333222233331
Q ss_pred cccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEe---cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc
Q psy852 134 VDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE---PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS 210 (891)
Q Consensus 134 ~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~---~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga 210 (891)
.++..|++|..+|+|+.+++.+.|.+.+.|+ .+++|+||+++|+++|++.... .+++|+++++||.+|.
T Consensus 138 ------~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~--~~~~v~~~~~~~~~G~ 209 (445)
T d3bc8a1 138 ------PKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRV 209 (445)
T ss_dssp ------TTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBC
T ss_pred ------CCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhcccc--CeEEEEEeCCCCCCee
Confidence 1244689999999999999988887777764 5788999999999999886433 2689999999999999
Q ss_pred ccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhc
Q psy852 211 FDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLK 290 (891)
Q Consensus 211 vDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 290 (891)
+||+++|+++|++||+|+|+|+|+|+...++...
T Consensus 210 ~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~---------------------------------------------- 243 (445)
T d3bc8a1 210 PDRLEELAVICANYDIPHVVNNAYGLQSSKCMHL---------------------------------------------- 243 (445)
T ss_dssp CCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH----------------------------------------------
T ss_pred ehhHHHHHHHHHHhCCcEEEEccchhhhhhcccc----------------------------------------------
Confidence 9999999999999999999999998765432100
Q ss_pred ccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCC
Q psy852 291 KIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNK 370 (891)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK 370 (891)
.....++..+|++++|+||
T Consensus 244 -------------------------------------------------------------~~~~~~~~~vd~~~~s~hK 262 (445)
T d3bc8a1 244 -------------------------------------------------------------IQQGARVGRIDAFVQSLDK 262 (445)
T ss_dssp -------------------------------------------------------------HHHHHHHSCCCEEEEEHHH
T ss_pred -------------------------------------------------------------chhccCcCCcceEEecCcc
Confidence 0000112347999999999
Q ss_pred cCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCC-ChhHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q psy852 371 WLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449 (891)
Q Consensus 371 ~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr-~~~~l~~w~~l~~~g~~G~~~ii~~~lelA 449 (891)
++++|+++|++++++...+.... . +..+++ ....+.+|++++.+|.+|+.+.+++..+++
T Consensus 263 ~~~~p~g~~~l~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 323 (445)
T d3bc8a1 263 NFMVPVGGAIIAGFNEPFIQDIS---K----------------MYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMF 323 (445)
T ss_dssp HHSCCSSCEEEEESCHHHHHHHH---H----------------HSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCceeeeCChHHHHHHH---H----------------HHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 99999999999999875543211 1 112223 345789999999999999999999999999
Q ss_pred HHHHHhhcc
Q psy852 450 KLFEGKVRR 458 (891)
Q Consensus 450 r~l~~~L~~ 458 (891)
+++.+.|.+
T Consensus 324 ~~~~~~L~~ 332 (445)
T d3bc8a1 324 VYLSTQLKK 332 (445)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.2e-20 Score=211.24 Aligned_cols=171 Identities=13% Similarity=-0.022 Sum_probs=125.7
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc----CCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAI----GCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
-||+|-.+++.+..++..+..... |++...+..+..++++-.++.+.+++++|...... -
T Consensus 24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~-------i--------- 87 (405)
T d1jf9a_ 24 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEE-------L--------- 87 (405)
T ss_dssp EECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGG-------E---------
T ss_pred EEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCccc-------c---------
Confidence 599998888788887766655443 33333444455555666688999999999754310 0
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH-H---cCCeEEEEe
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-M---AFVRLKILE 170 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~---~~~~v~~V~ 170 (891)
.+++++|...|..+..++.... .+...|+++..+|+|+..++. + .|.+++.+|
T Consensus 88 ------------~~~~~~T~~~~~~~~~~~~~~~-----------~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~ 144 (405)
T d1jf9a_ 88 ------------VFVRGTTEGINLVANSWGNSNV-----------RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIP 144 (405)
T ss_dssp ------------EEESSHHHHHHHHHHHHHHHHC-----------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEEC
T ss_pred ------------cccCcHHHHHHHHHhccccccc-----------CCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEEC
Confidence 1345665544443333332221 123358999999999877773 2 478999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+|++|.+|++.+++++.+.+ .+|++++.++.+|.+.||++|+++|+++|+++||||++
T Consensus 145 ~~~~g~~~~~~~~~~i~~~t------~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q 202 (405)
T d1jf9a_ 145 LNPDGTLQLETLPTLFDEKT------RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQ 202 (405)
T ss_dssp BCTTSCBCGGGHHHHCCTTE------EEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCcCCHHHHHHhccCCc------EEEEEecCCCcccccCchHHhhhHHHHcCCeeecccce
Confidence 99999999999999887764 69999999999999999999999999999999999988
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.88 E-value=1.9e-22 Score=227.11 Aligned_cols=236 Identities=15% Similarity=0.138 Sum_probs=177.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCc
Q psy852 54 SCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPF 133 (891)
Q Consensus 54 ~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~ 133 (891)
....+|.+++.|+++++|.+.... ++.+|+.+++. .+.+|+....
T Consensus 110 ~~~~~~~~~~~~~~~~~g~~~~~~------------------------------~~~~~t~~~~~-~~l~a~r~~~---- 154 (434)
T d2z67a1 110 IMYALTNKILESFFKQLGLNVHAI------------------------------ATPISTGMSIS-LCLSAARKKY---- 154 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEE------------------------------EESSCHHHHHH-HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhcCCCccee------------------------------ecCcHHHHHHH-HHHHHHHHhh----
Confidence 446889999999999999986421 12233323333 3333433211
Q ss_pred cccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEe---cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc
Q psy852 134 VDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE---PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS 210 (891)
Q Consensus 134 ~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~---~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga 210 (891)
++..|++|...|+|+.|++.+.+...+.|+ .++++.+|+++|++.|+++.+.+. +.+|++|.+|+..|.
T Consensus 155 -------~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~-~~~v~~~~~~~~~g~ 226 (434)
T d2z67a1 155 -------GSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGN-RPCVLSTLTFFPPRN 226 (434)
T ss_dssp -------CCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTC-CEEEEEESSCCTTBC
T ss_pred -------cCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCC-ceEEEeccCcCCCcc
Confidence 234589999999999999988777766665 467899999999999998876665 457999999999999
Q ss_pred ccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhc
Q psy852 211 FDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLK 290 (891)
Q Consensus 211 vDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 290 (891)
+||+++|+++|++||+|+|||+|+|+...+++.+.
T Consensus 227 ~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~--------------------------------------------- 261 (434)
T d2z67a1 227 SDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKL--------------------------------------------- 261 (434)
T ss_dssp CCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH---------------------------------------------
T ss_pred ccCHHHHHHHHHHhCCeEEEeccchhhhhhccccc---------------------------------------------
Confidence 99999999999999999999999987553321000
Q ss_pred ccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCC
Q psy852 291 KIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNK 370 (891)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK 370 (891)
. ..+...+|++++|+||
T Consensus 262 --------------------------------------------------------------~-~~~~~~~D~~~~s~hK 278 (434)
T d2z67a1 262 --------------------------------------------------------------K-KAFKYRVDAVVSSSDK 278 (434)
T ss_dssp --------------------------------------------------------------H-HHHTSCCSEEEEEHHH
T ss_pred --------------------------------------------------------------c-ccccCCcceEEEcCcc
Confidence 0 0011247999999999
Q ss_pred cCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCC-CCChhHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q psy852 371 WLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPL-SRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449 (891)
Q Consensus 371 ~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelA 449 (891)
++++|.++|++++|++..+...- .+..+ +....++.+|+++..+|.+|+.+++++..+++
T Consensus 279 ~l~~~~g~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a 339 (434)
T d2z67a1 279 NLLTPIGGGLVYSTDAEFIKEIS-------------------LSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSK 339 (434)
T ss_dssp HHCCCSSCEEEEESCHHHHHHHH-------------------TTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccccccCcHHHHHHHH-------------------hhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99999999999999875543211 01112 23456889999999999999999999999999
Q ss_pred HHHHHhhccC
Q psy852 450 KLFEGKVRRD 459 (891)
Q Consensus 450 r~l~~~L~~~ 459 (891)
+|++++|++.
T Consensus 340 ~~l~~~L~~l 349 (434)
T d2z67a1 340 KLLDELLNDL 349 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998763
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.87 E-value=1.8e-20 Score=209.89 Aligned_cols=171 Identities=11% Similarity=-0.026 Sum_probs=125.7
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCC----CCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCI----GFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~----~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
-|++|-.+++.+..++..+.....+.+ ...+..+..+.++-.++.+.+++++|.+.... +
T Consensus 24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~--------i-------- 87 (408)
T d1t3ia_ 24 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPRE--------I-------- 87 (408)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGG--------E--------
T ss_pred EEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCccc--------E--------
Confidence 499999888888888877766554433 33345555556666678999999999975421 0
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH----HcCCeEEEEe
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILE 170 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~----~~~~~v~~V~ 170 (891)
.++++++...|+....+..... .+...|+++..+|.|+..++. ..|..++.+|
T Consensus 88 ------------~~~~~tt~~~n~~~~~~~~~~~-----------~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~ 144 (408)
T d1t3ia_ 88 ------------VYTRNATEAINLVAYSWGMNNL-----------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQ 144 (408)
T ss_dssp ------------EEESSHHHHHHHHHHHTHHHHC-----------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEEC
T ss_pred ------------EeecchHHHHHHHHhhcccccc-----------CCCCEEEeecccchhhhhhhhhhhhccCceEeeee
Confidence 1234454444443333222110 122358899999999877663 2578999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+.++..+.+.|++.+.+++ .+|++++.++++|.+.|+++|+++|+++|+++|||||+
T Consensus 145 ~~~~~~~~~~~l~~~~~~~t------~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q 202 (408)
T d1t3ia_ 145 LDEQESFDLEHFKTLLSEKT------KLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQ 202 (408)
T ss_dssp BCTTSSBCHHHHHHHCCTTE------EEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTT
T ss_pred ccccccccHHHhhhccCCCc------eEEEEecccccccccCcHHHHhhhhhccCceeeeccce
Confidence 99999999999999887664 69999999999999999999999999999999999988
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.80 E-value=2.3e-18 Score=189.45 Aligned_cols=105 Identities=10% Similarity=0.139 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 645 LKLWFVIRTYGLSGL-QKYIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 645 L~lW~~L~~lG~~G~-~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
+.+..+++.+...|. +.++++..++++++.++|+++++++++.+ +..++|+|.+.+. ...+.+.+.|.+.|
T Consensus 271 ~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~------~~~~~i~~~L~~~g 344 (381)
T d1elua_ 271 AGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSP------LGHRAIVQKLEEQR 344 (381)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSS------SCHHHHHHHHHHTT
T ss_pred hhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCC------CCHHHHHHHHHhCC
Confidence 455566777766665 45578899999999999999999999854 5678999998654 23457888899999
Q ss_pred cEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 722 ~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
+.... .....++ +|++.+||++|||+++++|+++
T Consensus 345 i~v~~---~~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 345 IYLRT---IADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp EECEE---ETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred cEEEe---cCCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 76322 2334567 9999999999999999999864
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=5.4e-20 Score=209.09 Aligned_cols=161 Identities=11% Similarity=0.041 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHhhccC--CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccch
Q psy852 439 QKYIRRHCELAKLFEGKVRRD--PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH 516 (891)
Q Consensus 439 ~~ii~~~lelAr~l~~~L~~~--~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH 516 (891)
-...+-+.+..+.+++++..- .+-...|.+|+||||||++|+++||.++.++++. .|... ...+|+|.++|
T Consensus 89 P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~------~g~~~-~~~~~~~~~~H 161 (450)
T d1pmma_ 89 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA------AGKPT-DKPNLVCGPVQ 161 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHH------HTCCC-SCCEEEESSCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhh------cCCCC-CCceEEecccH
Confidence 344445566667777777641 1224567789999999999999999999887653 23333 33466778899
Q ss_pred HHHHHHHHHcCceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hh------h--
Q psy852 517 SCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CY------R-- 574 (891)
Q Consensus 517 ~Sv~Kaa~l~gv~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~------~-- 574 (891)
+|+.|+|+++|++++.||+++ +|+||+++|+++|+++ +++|++++|||. |. .
T Consensus 162 ~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~------t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~ 235 (450)
T d1pmma_ 162 ICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGID 235 (450)
T ss_dssp HHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhC------ceEEEeeeeeccCCCccccchhhHHHHHHHHHhccC
Confidence 999999999999999999986 5999999999999875 678999999886 11 0
Q ss_pred ---hhc-------------------CCCCccEEEEcCcccCCcccccEEEEEeCCccchh
Q psy852 575 ---KSQ-------------------GIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS 612 (891)
Q Consensus 575 ---~ld-------------------Gi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~ 612 (891)
|+| |+++||||++|+||||++|+|||++++|++..+..
T Consensus 236 i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~ 295 (450)
T d1pmma_ 236 IDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQ 295 (450)
T ss_dssp CCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCG
T ss_pred cEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhh
Confidence 333 46789999999999999999999999999865543
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.80 E-value=9.6e-19 Score=196.87 Aligned_cols=278 Identities=11% Similarity=0.030 Sum_probs=186.6
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHH-HHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVC-MLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~a-l~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
++.+++.+++...+. -.+.+++|+|++++.+ +.++|.+ . ..+++|++|..+|+|+.|++.+
T Consensus 98 ~~~~~~~~l~g~~~~--~~~~~~~~~t~~~~~~~l~a~~~~-~---------------~~~~~vi~~~~~H~s~~~a~~~ 159 (445)
T d3bc8a1 98 SLVLNVIKLAGVHSV--ASCFVVPMATGMSLTLCFLTLRHK-R---------------PKAKYIIWPRIDQKSCFKSMVT 159 (445)
T ss_dssp HHHHHHHHHHTCTTC--CEEEEESSCHHHHHHHHHHHHHHH-C---------------TTCCEEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcc--cCccccccchHHHHHHHHHHHHHh-C---------------CCCCEEEEcCcccHHHHHHHHH
Confidence 455666666543222 1233677888766555 5554432 1 1346799999999999999999
Q ss_pred cCceEEEec---CCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----hhcC------
Q psy852 526 AFVRLKILE---PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----KSQG------ 578 (891)
Q Consensus 526 ~gv~v~~Vp---~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~ldG------ 578 (891)
+|++.+.|+ .+++|+||+++|+++|+++...+ +.+|+++.|++. |++ ++|+
T Consensus 160 ~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~--~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~ 237 (445)
T d3bc8a1 160 AGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEH--ILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS 237 (445)
T ss_dssp TTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGG--EEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred cCCeeEEEEeeccCcccccCHHHHHHHHHhccccC--eEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhh
Confidence 998877664 57889999999999999865433 567777776663 433 3443
Q ss_pred ------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccc-ccccch
Q psy852 579 ------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLS-RRFRSL 645 (891)
Q Consensus 579 ------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~S-Rr~~aL 645 (891)
+..+|++++|+|||+++|+|+|++++++...+..... ...++ .....+
T Consensus 238 ~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 298 (445)
T d3bc8a1 238 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK-------------------MYPGRASASPSL 298 (445)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH-------------------HSCSCBCSHHHH
T ss_pred hhccccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHH-------------------HHhhcccCcchH
Confidence 3568999999999999999999999998765543211 11112 235678
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC---CcEEeCCCce-eEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP---RFEISNDVRL-GLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~---~~eil~~~~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
.+|..++.+|.+++.+.+++..++++++.+.|+++. +..++..+.. ...++.+...... .......+...|.+.|
T Consensus 299 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~l~~~L~~~g 377 (445)
T d3bc8a1 299 DVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH-HDKAVTQLGSMLFTRQ 377 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS-SSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeecccc-CCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999997643 4455544433 3334444322111 1223345666676665
Q ss_pred cE---EEeec-----------------cccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy852 722 RL---HMVPA-----------------SQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLVCF 764 (891)
Q Consensus 722 ~~---~~s~s-----------------~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~~ 764 (891)
+. +..+. .......+ ++++..+|++|||++++.|+++++.+.+
T Consensus 378 I~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 378 VSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp CCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 41 11000 00111235 7778899999999999999999965543
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.77 E-value=1.1e-17 Score=187.81 Aligned_cols=245 Identities=14% Similarity=0.160 Sum_probs=179.4
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEec---CCCCCCcCHHHH
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE---PDDKNSLRGATL 546 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp---~d~~G~mD~~~L 546 (891)
.|++++++.|+.+.|... ++..|++|..+|+|+.|++.+.|.+.+.|+ .++++.||+++|
T Consensus 137 ~~t~~~~~~~l~a~r~~~-----------------~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l 199 (434)
T d2z67a1 137 ISTGMSISLCLSAARKKY-----------------GSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDI 199 (434)
T ss_dssp SCHHHHHHHHHHHHHHHH-----------------CCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHH
T ss_pred cHHHHHHHHHHHHHHHhh-----------------cCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHH
Confidence 444566666777665432 245699999999999999998888766665 467799999999
Q ss_pred HHHHHhhhhcCCccEEEEecCCccc-------------hhh-----hhcC-----------------CCCccEEEEcCcc
Q psy852 547 RQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----KSQG-----------------IEYADSFNVNVNK 591 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~ldG-----------------i~~aDSIs~d~HK 591 (891)
+++|+++...+.+++ |+.+.+++. |++ ++|+ ..++|++++|+||
T Consensus 200 ~~~i~~~~~~~~~~~-v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK 278 (434)
T d2z67a1 200 ENAIKKEIELGNRPC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDK 278 (434)
T ss_dssp HHHHHHHHHTTCCEE-EEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHH
T ss_pred HHHHHhhhhcCCceE-EEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEcCcc
Confidence 999999877776664 555555442 433 2332 3569999999999
Q ss_pred cCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy852 592 WLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAK 671 (891)
Q Consensus 592 ~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~ 671 (891)
++++|.|+|+++++++..+...-.. + ...+....++.+|+++..+|.+|+.+.+++..++++
T Consensus 279 ~l~~~~g~~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~ 340 (434)
T d2z67a1 279 NLLTPIGGGLVYSTDAEFIKEISLS---Y---------------PGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKK 340 (434)
T ss_dssp HHCCCSSCEEEEESCHHHHHHHHTT---S---------------CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccccccCcHHHHHHHHhh---c---------------ccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999999999988655432110 0 111334667899999999999999999999999999
Q ss_pred HHHHHhccC---CCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE---EEeecc--------ccCCeEE-
Q psy852 672 LFEGKVRRD---PRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL---HMVPAS--------QEQNDEV- 736 (891)
Q Consensus 672 ~L~~~L~~~---~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~---~~s~s~--------~~g~~~l- 736 (891)
++.++|+++ .++.++..+....+++.... ...++...|.+.|+. ...+.. ......+
T Consensus 341 ~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~--------~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~ 412 (434)
T d2z67a1 341 LLDELLNDLSKKTGGKFLDVESPIASCISVNS--------DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIV 412 (434)
T ss_dssp HHHHHHHHHHHHSSCCBCCCCCSSEEEEECSS--------CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEE
T ss_pred HHHHHHHHhhhhcCceecCCCCCceeeeecCC--------CHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEE
Confidence 999999774 46677777777777777632 456778888888764 121111 1112345
Q ss_pred EEecCCCCHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei 758 (891)
++++..+|+||||+++++|+++
T Consensus 413 ~~~s~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 413 MNAAIGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp EECCTTCCHHHHHHHHHHHHTC
T ss_pred EecCCCCCHHHHHHHHHHHhcC
Confidence 7888899999999999999863
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.75 E-value=8.2e-17 Score=177.84 Aligned_cols=175 Identities=13% Similarity=0.007 Sum_probs=116.8
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHhcCCCCCccc---cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 16 QHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWA---ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 16 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~---~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
.+-.||++-..++.+..++..+...+.+.++.... .+....++..++.+.+|+++|.+++..
T Consensus 26 ~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei--------------- 90 (404)
T d1qz9a_ 26 EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEV--------------- 90 (404)
T ss_dssp TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSE---------------
T ss_pred CCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcE---------------
Confidence 34568988777777777777766655444332211 122234566788999999999987642
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD 172 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d 172 (891)
.+++++|+..+..+....+.+....+ .+ .+++++.+|++........+.++..++++
T Consensus 91 --------------~~~~~~T~~~~~~~~~~~~~~~~~~~--------~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (404)
T d1qz9a_ 91 --------------VVTDTTSINLFKVLSAALRVQATRSP--------ER-RVIVTETSNFPTDLYIAEGLADMLQQGYT 147 (404)
T ss_dssp --------------EECSCHHHHHHHHHHHHHHHHHHHST--------TC-CEEEEETTSCHHHHHHHHHHHHHHCSSCE
T ss_pred --------------EEecCchHHHHHHhhhhhhhhcccCC--------Cc-EEEEeccccchHHHHHHhhhheeeeecee
Confidence 14566765544433333222111110 12 24555666766655553222344455566
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+|..+++.++++|++++ .+|++++.++++|.+.|+++|+++|+++|+.+|||+++
T Consensus 148 ~~~~~~~~~~~~~i~~~T------~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q 203 (404)
T d1qz9a_ 148 LRLVDSPEELPQAIDQDT------AVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAH 203 (404)
T ss_dssp EEEESSGGGHHHHCSTTE------EEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTT
T ss_pred ccccccchhHHHhcCCCc------eEEEEecccccccceecHHHHhccccccccceeEEeec
Confidence 678889999999887764 59999999999999999999999999999999999988
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=3.1e-15 Score=163.92 Aligned_cols=170 Identities=12% Similarity=0.106 Sum_probs=119.5
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCCCCcc---ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCIGFSW---AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~---~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
-|+++-.+++.+++++..+...+.+.++..+ ..+..+.++-.++.+.+++++|.+++..
T Consensus 3 iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i------------------ 64 (376)
T d1eg5a_ 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEI------------------ 64 (376)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGE------------------
T ss_pred EEEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcE------------------
Confidence 3888887788888888887776655444332 2333455555567899999999986532
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d 172 (891)
.+++|+|..-+..+..++.... .++-.++++..+|.++..+.. ..+.+++.||+|
T Consensus 65 -----------~~~~~~T~~l~~~~~~~~~~~~-----------~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~ 122 (376)
T d1eg5a_ 65 -----------FFTSCATESINWILKTVAETFE-----------KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD 122 (376)
T ss_dssp -----------EEESCHHHHHHHHHHHHHHHTT-----------TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC
T ss_pred -----------EEECCHHHHHHhhhhccccccc-----------ccCcccccccccchhhHHHHHHHHhcCCEEEEEcCC
Confidence 1345555432332223333221 123346777777777766553 357899999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc--CCceeeeccc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF--DVWLHVDGAY 234 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~--~~~lHvDaA~ 234 (891)
++|++|++++++.|+++ +.+|++++.++.+|.++|+++|.++++.+ ++.+.||+|+
T Consensus 123 ~~~~id~~~l~~~i~~~------t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q 180 (376)
T d1eg5a_ 123 SRGVVKLEELEKLVDED------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQ 180 (376)
T ss_dssp TTSCBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTT
T ss_pred CCCeECHHHHHHhcCCC------ceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeee
Confidence 99999999999999776 46999999999999999999999999776 5556666665
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=9.9e-16 Score=168.31 Aligned_cols=163 Identities=12% Similarity=0.064 Sum_probs=116.6
Q ss_pred ccccccCCCCC-CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccc
Q psy852 18 PRFHAYFPSGN-SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNI 96 (891)
Q Consensus 18 p~~~~~~~~~~-~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~ 96 (891)
|+++-+-|++. ..+.++..|.. ....| -|+.+.++-.++.+.|++++|.++... +
T Consensus 18 ~~~~l~~pGP~~~~~~Vl~am~~-----~~i~H-Rs~~f~~i~~ea~~~l~~llg~~~~~~--------i---------- 73 (388)
T d1h0ca_ 18 PNQLLLGPGPSNLPPRIMAAGGL-----QMIGS-MSKDMYQIMDEIKEGIQYVFQTRNPLT--------L---------- 73 (388)
T ss_dssp CCCEECSSSCCCCCHHHHHHHTC-----CCCCT-TSHHHHHHHHHHHHHHHHHHTCCCSEE--------E----------
T ss_pred CcCccccCCCCCCCHHHHHHhCc-----CCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCcE--------E----------
Confidence 56665655443 44666655432 22233 578889999999999999999986531 0
Q ss_pred cccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH--HcCCeEEEEecCCC
Q psy852 97 EDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM--MAFVRLKILEPDDK 174 (891)
Q Consensus 97 ~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~--~~~~~v~~V~~d~~ 174 (891)
.+++|||.+.++.+.++... +..+++....|++..-... ..+..+..++.+..
T Consensus 74 ----------i~~gsgT~a~~~~i~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1h0ca_ 74 ----------VISGSGHCALEAALVNVLEP---------------GDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPG 128 (388)
T ss_dssp ----------EESSCHHHHHHHHHHHHCCS---------------SCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTT
T ss_pred ----------EEcCcHHHHHHHHHHHhhcc---------------CCceeeecccceeeeeccccccccccccccccCCc
Confidence 24578887666555554211 1125566677887644432 34557777788888
Q ss_pred CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 175 NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 175 g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+.+|.+.+++.+.... +.+|++++.+|++|.++|+++|+++|+++|+++|||+++
T Consensus 129 ~~~~~~~~~~~~~~~~-----~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~q 183 (388)
T d1h0ca_ 129 GHYTLQEVEEGLAQHK-----PVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVA 183 (388)
T ss_dssp CCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTT
T ss_pred cccchHHHHHHhccCC-----cceEEEeeeeeccccccCHHHHHHHhhcccccceecccc
Confidence 9999999998887754 469999999999999999999999999999999999988
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=2.4e-15 Score=165.88 Aligned_cols=171 Identities=16% Similarity=0.121 Sum_probs=127.3
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCC------CCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAIGCI------GFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND 91 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~n~~------~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~ 91 (891)
|-|+++-.+++..|.++..|...+-+.+ ...+..+..++++-.++.+.+|+++|.+.+..
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I-------------- 68 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREI-------------- 68 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGE--------------
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcE--------------
Confidence 7799999999999999988866553221 22333444556666678899999999986532
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEE
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKI 168 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~ 168 (891)
.+++|+|...+..+..+..... .+.-.|++++.+|.|+...++ ..|.+++.
T Consensus 69 ---------------~~~~~~t~~l~~~~~~~~~~~~-----------~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~ 122 (391)
T d1p3wa_ 69 ---------------VFTSGATESDNLAIKGAANFYQ-----------KKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 122 (391)
T ss_dssp ---------------EEESSHHHHHHHHHHHHHHHHG-----------GGCCEEEEETTSCHHHHHHHHHHHHTTCEEEE
T ss_pred ---------------EEECCHHHHHHHHHhhhhhhhc-----------CCCCEEEEeccccchHHHHHHHHHHcCCEEEE
Confidence 1345665433333332221111 012348999999999877663 35789999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
|+.|++|.+|++++++++++.+ .+|+++..++.+|.+.|+++|+++|+++|+++++|+++
T Consensus 123 v~~~~~~~~d~~~~~~~i~~~T------~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~ 182 (391)
T d1p3wa_ 123 LAPQRNGIIDLKELEAAMRDDT------ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQ 182 (391)
T ss_dssp ECCCTTSCCCHHHHHHHCCTTE------EEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTT
T ss_pred eCCCCCCeEcHHHHHHhCCCCc------EEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeecc
Confidence 9999999999999999997764 59999999999999999999999999999999999888
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.59 E-value=4e-14 Score=153.19 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=80.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
.|+++..+|+|+..++...|.+++.||+++ ++.+|+++|++.+++.++.+ .+.+|+++..+|.+|.+.|+++|+++|
T Consensus 88 ~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~-~~~lv~i~~~~n~tG~~~~l~~I~~ia 166 (364)
T d2e7ja1 88 WVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIAKVC 166 (364)
T ss_dssp EEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEeecccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccC-CceEEEeecCCCCCceeecchhheecc
Confidence 488899999999999988888999999864 67899999999998876543 456888999999999999999999999
Q ss_pred HHcCCceeeecccc
Q psy852 222 KEFDVWLHVDGAYA 235 (891)
Q Consensus 222 ~~~~~~lHvDaA~G 235 (891)
++||+++|+|+|++
T Consensus 167 ~~~~i~livD~a~~ 180 (364)
T d2e7ja1 167 SEYDVPLLVNGAYA 180 (364)
T ss_dssp HTTTCCEEEECTTT
T ss_pred ccccchhhccccch
Confidence 99999999999983
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.53 E-value=1.2e-12 Score=141.47 Aligned_cols=137 Identities=9% Similarity=-0.022 Sum_probs=88.0
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.++.+.++-.++.+.+++++|.+++..- + .+++|||...++.+.++.+.
T Consensus 27 ~~~~~~~~~~~~r~~l~~l~~~~~~~~~---------------------i------~~t~s~T~~~~~~~~~l~~~---- 75 (361)
T d1m32a_ 27 DDDYNIGVVEQIRQQLTALATASEGYTS---------------------V------LLQGSGSYAVEAVLGSALGP---- 75 (361)
T ss_dssp SHHHHTTTHHHHHHHHHHHHCSSSSEEE---------------------E------EEESCHHHHHHHHHHHSCCT----
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCCEE---------------------E------EECCCHHHHHHHHHHHhhhh----
Confidence 3455666677899999999999876310 0 24567775544443333111
Q ss_pred CCccccccccCCeEEEecCCCChHHHHHH-HHcCCeEEEEecCCCCcccH--HHHHHHHHhhhhcCCcceEEEeecccCc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MMAFVRLKILEPDDKNSLRG--ATLRQVMQQDETMGYIPFFVSTTLGTTS 207 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa-~~~~~~v~~V~~d~~g~id~--~~L~~~l~~~~~~g~~p~~V~~t~Gtt~ 207 (891)
.+-+++++..++.+..-.. ...+.....+........+. +.+...+.++ +.+|++++.+|.
T Consensus 76 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~ 139 (361)
T d1m32a_ 76 ----------QDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPT------ISHIAMVHSETT 139 (361)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTT------CCEEEEESEETT
T ss_pred ----------ccccceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccC------ccceEEEeeecc
Confidence 1223555555554444333 33444555555555444444 3333333333 569999999999
Q ss_pred cccccCHHHHHHHHHHcCCceeeeccc
Q psy852 208 CCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 208 ~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+|.+.|+++|+++|+++|+.+++||++
T Consensus 140 tG~~~~i~~i~~~~~~~g~~~~vDa~q 166 (361)
T d1m32a_ 140 TGMLNPIDEVGALAHRYGKTYIVDAMS 166 (361)
T ss_dssp TTEECCHHHHHHHHHHHTCEEEEECTT
T ss_pred cccchhhhhhhhhhcccceeeEeeccc
Confidence 999999999999999999999999988
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.2e-12 Score=143.85 Aligned_cols=277 Identities=14% Similarity=0.172 Sum_probs=173.0
Q ss_pred HHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH
Q psy852 441 YIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 519 (891)
Q Consensus 441 ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv 519 (891)
..+..++.+| .+++.++..++ +|+ +++|+|+++..++.+......+ +.-.|++++..|.++
T Consensus 45 ~~~~~~~~~R~~iA~~lg~~~~-~I~--~~~~~t~~l~~~~~~~~~~~~~---------------~gd~Vv~~~~~~~s~ 106 (391)
T d1p3wa_ 45 QAEEAVDIARNQIADLVGADPR-EIV--FTSGATESDNLAIKGAANFYQK---------------KGKHIITSKTEHKAV 106 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGG-GEE--EESSHHHHHHHHHHHHHHHHGG---------------GCCEEEEETTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-cEE--EECCHHHHHHHHHhhhhhhhcC---------------CCCEEEEeccccchH
Confidence 3444555554 67777877665 676 7889999988888776554332 234699999999998
Q ss_pred HHHHH---HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------hhhh-----hcCC-
Q psy852 520 EKAAM---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYRK-----SQGI- 579 (891)
Q Consensus 520 ~Kaa~---l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~~-----ldGi- 579 (891)
...++ ..|++++.+|.+++|.+|+++++++|++.++ .+++ .+..|+.. |+++ +|+.
T Consensus 107 ~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~----lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~ 182 (391)
T d1p3wa_ 107 LDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTI----LVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQ 182 (391)
T ss_dssp HHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEE----EEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcE----EEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeecc
Confidence 76664 3589999999999999999999999987543 1222 23346554 3332 3332
Q ss_pred -----------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccccc-chHH
Q psy852 580 -----------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR-SLKL 647 (891)
Q Consensus 580 -----------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~-aL~l 647 (891)
..+|.+.+++|||+ +|.|+|+++++.+.... ..+.+.....+.... .++.... ...+
T Consensus 183 ~~g~~~~d~~~~~~D~~~~s~~k~~-g~~g~g~~~~~~~~~~~----~~~~~~gg~~~~~~~------~~~~~~~~~~~l 251 (391)
T d1p3wa_ 183 SVGKLPIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRKPRVR----IEAQMHGGGHERGMR------SGTLPVHQIVGM 251 (391)
T ss_dssp TBTTBCCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBTTBCC----CCCSSCSSCTTTTTS------CSCCCHHHHHHH
T ss_pred ccCCccccchhcccccccccccccc-CCCceEEEEEecchhcc----cCCcccCCccccCcc------cCcchhhhhhhh
Confidence 34799999999995 68899999998873211 111111110000000 0011110 1111
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC---ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV---RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 648 W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
-..+. ...+...+..++..++++++.+.|..+++..+.... ...+++|.+... ....+...|. ++..
T Consensus 252 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~--~i~v 321 (391)
T d1p3wa_ 252 GEAYR-IAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMALK--DLAV 321 (391)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS-------CHHHHHHHTT--TEEC
T ss_pred hhhhh-HHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC-------ChHHHHHHhC--CCEE
Confidence 11112 233445556677788999999999998887764332 246888888754 3344555553 2222
Q ss_pred Eeeccc-------------------cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 725 MVPASQ-------------------EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 725 ~s~s~~-------------------~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+++.+ ...+.+ ||++.++|++|||+++++|++++.
T Consensus 322 ~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~ 377 (391)
T d1p3wa_ 322 SSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG 377 (391)
T ss_dssp BCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 111110 011356 999999999999999999999884
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.46 E-value=4.2e-12 Score=137.87 Aligned_cols=165 Identities=16% Similarity=0.102 Sum_probs=109.2
Q ss_pred CCccccccCCC-CCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 16 QHPRFHAYFPS-GNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 16 ~~p~~~~~~~~-~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
+-|+-+=+-|+ .+..+.++..|.. .... ..++.+.++-.++.+.|++++|.|+... +
T Consensus 15 ~~p~~~l~~PGP~~v~~~Vl~am~~-----~~~~-hr~~ef~~i~~~~r~~l~~ll~~~~~~~--------i-------- 72 (377)
T d1vjoa_ 15 EVPSRLLLGPGPSNAHPSVLQAMNV-----SPVG-HLDPAFLALMDEIQSLLRYVWQTENPLT--------I-------- 72 (377)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHHSS-----CCCC-TTSHHHHHHHHHHHHHHHHHHTCCCSCE--------E--------
T ss_pred CCCcceeecCCCCCCCHHHHHHhCc-----CCCC-CCCHHHHHHHHHHHHHHHHHhCCCCCeE--------E--------
Confidence 45543323333 2355677655432 2222 3578899999999999999999986531 1
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH--HHcCCeEEEEecC
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA--MMAFVRLKILEPD 172 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa--~~~~~~v~~V~~d 172 (891)
.+++|||.+.++.+.++.... ..+++....|++..... ...+.....+...
T Consensus 73 ------------~~~g~gT~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (377)
T d1vjoa_ 73 ------------AVSGTGTAAMEATIANAVEPG---------------DVVLIGVAGYFGNRLVDMAGRYGADVRTISKP 125 (377)
T ss_dssp ------------EESSCHHHHHHHHHHHHCCTT---------------CEEEEEESSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ------------EEcCcHHHHHHHHHHhccccc---------------cccceeeechhhhhhhhhhhhhcccccccccC
Confidence 135678766555544442221 12444556776654433 2345566666666
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.....+.+..+....... +.+|++++.+|.+|.+.|+++|.++|+++|..+|+|+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~ 182 (377)
T d1vjoa_ 126 WGEVFSLEELRTALETHR-----PAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVT 182 (377)
T ss_dssp TTCCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTT
T ss_pred CCCcccchhhhhhhhcCc-----ceeeeeeeeeccceeeechhhhhhhhhhccceEEEecch
Confidence 666666666666555443 468999999999999999999999999999999999988
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.40 E-value=9.4e-12 Score=135.91 Aligned_cols=164 Identities=15% Similarity=0.066 Sum_probs=113.4
Q ss_pred CccccccCCCCC-CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 17 HPRFHAYFPSGN-SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 17 ~p~~~~~~~~~~-~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
.|+.+-+-|.+. ..+.++..|....+ . ..++.+.++-.++.+.|++++|.++... +
T Consensus 15 ~~~~~l~~PGP~~~~~~V~~Am~~~~~-----~-hr~~ef~~i~~~~r~~L~~ll~~~~~~~--------i--------- 71 (388)
T d2ch1a1 15 IPEKIMMGPGPSNCSKRVLTAMTNTVL-----S-NFHAELFRTMDEVKDGLRYIFQTENRAT--------M--------- 71 (388)
T ss_dssp CCCCBCCSSSSCCCCHHHHHHTTSCCC-----C-TTCHHHHHHHHHHHHHHHHHHTCCCSCE--------E---------
T ss_pred CCcceeeeCCCCCCCHHHHHHhCcCCC-----C-CCCHHHHHHHHHHHHHHHHHhCCCCCeE--------E---------
Confidence 355444545443 35777655432221 2 3578888999999999999999864321 1
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH--HHcCCeEEEEecCC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA--MMAFVRLKILEPDD 173 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa--~~~~~~v~~V~~d~ 173 (891)
.+++|||.+.++.+.++... .-.+++....|++..... ...+...+.+..+.
T Consensus 72 -----------~~~gsgT~a~ea~~~~l~~~---------------~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 125 (388)
T d2ch1a1 72 -----------CVSGSAHAGMEAMLSNLLEE---------------GDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP 125 (388)
T ss_dssp -----------EESSCHHHHHHHHHHHHCCT---------------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred -----------EEcCcHHHHHHHHHHHhccc---------------cccccccccccccccchhhhhhhccccccccccc
Confidence 13567876655555444211 112555566777765443 23566777888888
Q ss_pred CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 174 KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 174 ~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
....+.+..++.+.... +.+++.++.+|.+|.+.|+++|+++|+++++.++||+++
T Consensus 126 ~~~~~~~~~~~~~~~~~-----~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~s 181 (388)
T d2ch1a1 126 DRPFSLETLARAIELHQ-----PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVA 181 (388)
T ss_dssp TSCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTT
T ss_pred ccccchhhhhhhhccCC-----cceeeeeecccccccccchhhhcchhccccceeeeeeee
Confidence 77888888877765543 459999999999999999999999999999999999977
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.38 E-value=3.3e-12 Score=143.85 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=83.0
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH-HcCC--eEEEEecCCCCc--------
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-MAFV--RLKILEPDDKNS-------- 176 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~~~~--~v~~V~~d~~g~-------- 176 (891)
|+.+||+++|...+... -+ +.-.|+++..+|.|+..++. +.+. .+..+++|+.|.
T Consensus 86 f~~~Gtt~~n~a~i~a~-~~-------------~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~ 151 (462)
T d1c4ka2 86 FVLGGSSNANNTVTSAL-VS-------------NGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSD 151 (462)
T ss_dssp EESSHHHHHHHHHHHHH-CC-------------TTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGG
T ss_pred EECCchHHHHHHHHHHh-cC-------------CCCeEEecccchHHHHHHHHHHhcCCceeeecccccccccCCCChHH
Confidence 34677777776544321 11 23359999999999999885 4443 445556677663
Q ss_pred ccHHHHHHHHHh---hhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccC
Q psy852 177 LRGATLRQVMQQ---DETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICP 242 (891)
Q Consensus 177 id~~~L~~~l~~---~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~ 242 (891)
++.+.+++.+.+ ....+..|..+++...+|..|.+.|+++|+++|+++|++||+|+|||....+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~ 220 (462)
T d1c4ka2 152 FDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIP 220 (462)
T ss_dssp SCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSG
T ss_pred hhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccC
Confidence 334444433322 122344567778888889999999999999999999999999999987665543
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.31 E-value=6.2e-11 Score=127.60 Aligned_cols=272 Identities=12% Similarity=0.078 Sum_probs=156.3
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~ 529 (891)
+.+++.+.. + +++ +|+|++++|+.++.+.- .+.-.|+++..+|+|+..++.+.|.+
T Consensus 54 ~~~A~~~g~-e--~~~--~t~g~t~a~~~~~~al~-------------------~~gd~Vi~~~~~h~s~~~~~~~~g~~ 109 (364)
T d2e7ja1 54 NQLPKFLGC-D--VAR--VTNGAREAKFAVMHSLA-------------------KKDAWVVMDENCHYSSYVAAERAGLN 109 (364)
T ss_dssp THHHHHTTS-S--EEE--EESSHHHHHHHHHHHHC-------------------CTTCEEEEETTCCHHHHHHHHHTTCE
T ss_pred HHHHHHhCc-C--EEE--EECcHHHHHHHHHHHHh-------------------CCCcEEEeecccccccchHHHhccce
Confidence 355566654 2 344 67899999998886631 12236889999999999999999999
Q ss_pred EEEecCC--CCCCcCHHHHHHHHHhhhhcCCccEEEEec----CCccc--------hhh-----hhcCCC----------
Q psy852 530 LKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTT----LGTTS--------CYR-----KSQGIE---------- 580 (891)
Q Consensus 530 v~~Vp~d--~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~--------c~~-----~ldGi~---------- 580 (891)
++.+|++ .++.+|+++|+++|++.++.....++++.. .|+.. |++ ++|++.
T Consensus 110 v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~ 189 (364)
T d2e7ja1 110 IALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLK 189 (364)
T ss_dssp EEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHH
T ss_pred EEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhccc
Confidence 9999985 468999999999999877655554444432 34443 443 244421
Q ss_pred --CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-Hh
Q psy852 581 --YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LS 657 (891)
Q Consensus 581 --~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~ 657 (891)
.+|.+++++|||++.|.++|+++.++.. +...+.....|.... ....... ..+...+..+..+. ..
T Consensus 190 ~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~l~~~~ 258 (364)
T d2e7ja1 190 EIGADFIVGSGHKSMAASGPIGVMGMKEEW-AEIVLRRSEKYKNKE---------VELLGCT-ARGATIITLMASFPHVR 258 (364)
T ss_dssp HHTCSEEEEEHHHHSSCCSSCEEEEECTTT-TTTTTCBCSSCTTSB---------GGGTTCC-CCSHHHHHHHHHHHHHH
T ss_pred ccccceeeeccccccCCCCCEEEEEECHHH-HHHHHhhccccCccc---------ccccccc-cchhHHHHHHHHHHHHH
Confidence 3799999999999999999988887652 222222222221110 0010000 11122222222111 01
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-C-ceeEEEEEecCCc--chhhhhhHHHHHHHHHhCCcEEEeeccccCC
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISND-V-RLGLVCFRLRSEN--NLIADQNNRKLLEDINASGRLHMVPASQEQN 733 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~-~~~iV~Fr~~~~~--~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~ 733 (891)
...+..++.++.++++.++|++. ++.++.+ + ..+++.+...... ..........+...|..+|.... .....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g~~ 334 (364)
T d2e7ja1 259 ERIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGI---KPGLT 334 (364)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECS---CTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCcee---cCCCc
Confidence 11123345567888999999886 4555543 2 2344444432110 00011111234445556665311 11111
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 734 DEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 734 ~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..+......+|++|||+++++|+++++
T Consensus 335 ~~~~~~~~~~t~edid~~~~~l~ei~~ 361 (364)
T d2e7ja1 335 RYFKLSTYGLSDEEVDYVLNAFKEIIE 361 (364)
T ss_dssp SEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred ceEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 222112456799999999999999874
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=2.1e-11 Score=133.04 Aligned_cols=261 Identities=13% Similarity=0.006 Sum_probs=166.9
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.+|.+.++-.++.+.+.++++.....- ++. + .+|+|||.+.++.+.++.+..+
T Consensus 30 r~~~f~~~~~~~~~~~r~~~~~~~~~~-----------~~~-------i-------~~t~sgT~a~~~~~~~l~~~~~-- 82 (382)
T d2bkwa1 30 TSPEFVSIFQRVLKNTRAVFKSAAASK-----------SQP-------F-------VLAGSGTLGWDIFASNFILSKA-- 82 (382)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCGGGT-----------CEE-------E-------EEESCTTHHHHHHHHHHSCTTC--
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhcCCC-----------CeE-------E-------EEeCcHHHHHHHHHHHHHHhcC--
Confidence 467788888889999999998642210 000 1 2578998887777777643321
Q ss_pred CCccccccccCCeEEEecCCCChHHHHHH--HHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVEKAA--MMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS 207 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa--~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~ 207 (891)
+...+++...+|++..-.. ...+..+..+...+ ....+.+.+++.+.... +-+|++++.+|.
T Consensus 83 ----------~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~ 147 (382)
T d2bkwa1 83 ----------PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNS-----YGAVTVTHVDTS 147 (382)
T ss_dssp ----------SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSC-----CSEEEEESEETT
T ss_pred ----------CCCceEEEEechhhhhhhhhccccccccccccccCCCCccchhHHHHHhhhcc-----chheeeeecccc
Confidence 1223666778888765433 33455666665544 45678888888877643 459999999999
Q ss_pred cccccCHHHHHHHHHHcC--CceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHH
Q psy852 208 CCSFDNLAEIGPVAKEFD--VWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQA 285 (891)
Q Consensus 208 ~GavDpl~~I~~i~~~~~--~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (891)
+|...|+.++.++|++++ +.+||||++
T Consensus 148 tg~~~~~~~~~~~~~~~~~~~~~~vDa~q--------------------------------------------------- 176 (382)
T d2bkwa1 148 TAVLSDLKAISQAIKQTSPETFFVVDAVC--------------------------------------------------- 176 (382)
T ss_dssp TTEECCHHHHHHHHHHHCTTSEEEEECTT---------------------------------------------------
T ss_pred ccccccchhhhhhccccccceeeeeeccc---------------------------------------------------
Confidence 999999999999998875 666777765
Q ss_pred HhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEE
Q psy852 286 ISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFN 365 (891)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~ 365 (891)
+.+.+.. ++.. ..+|.++
T Consensus 177 --------------------------------------------------------s~g~~pi-d~~~-----~giD~~~ 194 (382)
T d2bkwa1 177 --------------------------------------------------------SIGCEEF-EFDE-----WGVDFAL 194 (382)
T ss_dssp --------------------------------------------------------TTTTSCC-CTTT-----TTCSEEE
T ss_pred --------------------------------------------------------ccccccc-cccc-----cCeeEEe
Confidence 2222100 0000 1479999
Q ss_pred EeCCCcCCccCCceEEEEeccccchhh--c--ccCccccCCCCC-Cccccccc----ccCCCCCh-hHHHHHHHHHHhcH
Q psy852 366 VNVNKWLLTAFDSSCLWVADRYKLTSA--L--VVDPLYLQHGHE-GAIDYRHW----GIPLSRRF-RSLKLWFVIRTYGL 435 (891)
Q Consensus 366 ~~~HK~~~~p~~~g~~~~r~~~~~~~~--~--~~~~~y~~~~~~-~~~~~~~~----~~~~sr~~-~~l~~w~~l~~~g~ 435 (891)
+++|||+++|.+.|+++++++...... . .....|...... ........ ...++-+. ...++-.+++.+-.
T Consensus 195 ~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~ 274 (382)
T d2bkwa1 195 TASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILE 274 (382)
T ss_dssp EESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999976321110 0 011222211000 00000000 11122222 23456678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 436 SGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 436 ~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
+|+.++.++..++++++.+.+....++..+.
T Consensus 275 ~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 305 (382)
T d2bkwa1 275 EGLHKRWDLHREMSDWFKDSLVNGLQLTSVS 305 (382)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTTCCEESS
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhcccccccc
Confidence 9999999999999999999998766655554
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=1.4e-11 Score=134.44 Aligned_cols=295 Identities=9% Similarity=-0.015 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccch
Q psy852 437 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH 516 (891)
Q Consensus 437 G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH 516 (891)
.+.+++++..+.++.+...+...+.-+++ +|+|||+++..++... .... .+.-.+++....|
T Consensus 33 ~f~~~~~~~~~~~r~~~~~~~~~~~~~i~--~t~sgT~a~~~~~~~l----~~~~------------~~gd~vlv~~~~~ 94 (382)
T d2bkwa1 33 EFVSIFQRVLKNTRAVFKSAAASKSQPFV--LAGSGTLGWDIFASNF----ILSK------------APNKNVLVVSTGT 94 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGTCEEEE--EESCTTHHHHHHHHHH----SCTT------------CSCCEEEEECSSH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCeEEE--EeCcHHHHHHHHHHHH----HHhc------------CCCCceEEEEech
Confidence 35667777888887776654332333566 7899999988776553 1110 0112456666777
Q ss_pred HHHHHH--HHHcCceEEEecC-CCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-------hhc
Q psy852 517 SCVEKA--AMMAFVRLKILEP-DDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-------KSQ 577 (891)
Q Consensus 517 ~Sv~Ka--a~l~gv~v~~Vp~-d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-------~ld 577 (891)
++..-. +...+.....+.. +.....+.+.+++++.+...+ .+ ...+..+.|+.. |.+ ++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vD 173 (382)
T d2bkwa1 95 FSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYG-AVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVD 173 (382)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCS-EEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEE
T ss_pred hhhhhhhhccccccccccccccCCCCccchhHHHHHhhhccch-heeeeeccccccccccchhhhhhccccccceeeeee
Confidence 664333 2345666666654 445568889998888764221 11 112223344443 322 245
Q ss_pred CC------------CCccEEEEcCcccCCcccccEEEEEeCCccch--hhh-c-cCCCccccCCCCCccc-----cCCcc
Q psy852 578 GI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLT--SAL-V-VDPLYLQHGHEGAIDY-----RHWGI 636 (891)
Q Consensus 578 Gi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~--~~l-~-~~~~Yl~~~~e~~~~~-----~~~ti 636 (891)
++ ..+|.+++++|||+++|.|+|+++++++..-. +.. . ....|........... .....
T Consensus 174 a~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (382)
T d2bkwa1 174 AVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAY 253 (382)
T ss_dssp CTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCC
T ss_pred cccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhccccccccc
Confidence 43 25899999999999999999999999874211 110 0 1111211100000000 00000
Q ss_pred ccccccc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--C---ceeEEEEEecCCcchhhhhhH
Q psy852 637 PLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND--V---RLGLVCFRLRSENNLIADQNN 710 (891)
Q Consensus 637 ~~SRr~~-aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~---~~~iV~Fr~~~~~~~~~d~ln 710 (891)
..+-... ...+-.+|+.+-.+|+.++.++..++++++.+.+....++..+.. + ...+++|.+.. +
T Consensus 254 ~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~---------~ 324 (382)
T d2bkwa1 254 FATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD---------P 324 (382)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC---------H
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCC---------H
Confidence 0011111 134456777788899999999999999999999988777666542 1 23577888752 3
Q ss_pred HHHHHHHHhCCcEEEeecc-ccCCeEE-EE-ecCCCCHHHHHHHHHHHHHHH
Q psy852 711 RKLLEDINASGRLHMVPAS-QEQNDEV-FE-LQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 711 ~~L~~~L~~~G~~~~s~s~-~~g~~~l-~s-v~~~tT~edId~li~~L~ei~ 759 (891)
..+.+.|.+.|+....+.. ..+..++ |+ +++.++++|||.++++|+.+.
T Consensus 325 ~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~ 376 (382)
T d2bkwa1 325 PDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 376 (382)
T ss_dssp HHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 5677888899987554432 2344566 88 778888899999999998765
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.24 E-value=5e-11 Score=124.90 Aligned_cols=258 Identities=12% Similarity=0.039 Sum_probs=170.5
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH--
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-- 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~-- 524 (891)
++.+.+++.+.... +++ +++||||+|+.++.+++. ....++.....|+++...+.
T Consensus 42 ~l~~~la~~~g~~~--~v~--f~~sGt~An~~a~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 98 (345)
T d1v72a1 42 QVKRKFCEIFERDV--EVF--LVPTGTAANALCLSAMTP-------------------PWGNIYCHPASHINNDECGAPE 98 (345)
T ss_dssp HHHHHHHHHHTSCC--EEE--EESCHHHHHHHHHHTSCC-------------------TTEEEEECTTSHHHHSSTTHHH
T ss_pred HHHHHHHHHHCCCc--EEE--ECCchHHHHHHHHHHHHh-------------------cCCccccccccceeeechhhHH
Confidence 44456677776532 555 788999999999877543 12246778888998877653
Q ss_pred -HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc--cEEEEecCCc----cc-----------hhhh-----hcC---
Q psy852 525 -MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI--PFFVSTTLGT----TS-----------CYRK-----SQG--- 578 (891)
Q Consensus 525 -l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i--p~~VvataGT----T~-----------c~~~-----ldG--- 578 (891)
+.+.....++.+.++.++++.+++.+.+....... +..+..+.++ .. |++| +|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~ 178 (345)
T d1v72a1 99 FFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRF 178 (345)
T ss_dssp HHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred HhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeeccccc
Confidence 45678888888999999999999999876543322 3333332222 11 3221 111
Q ss_pred ----------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc
Q psy852 579 ----------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 579 ----------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
....+.++..++|+++.+. +..+............ .+. ....+-..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~ 240 (345)
T d1v72a1 179 ANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAA--EAIVLFNTSLATEMSY---RRK-------------RAGHLSSK 240 (345)
T ss_dssp HHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSC--EEEEESSGGGHHHHHH---HHH-------------HTTCCCSS
T ss_pred ceeccccccCHHHhhccccccccccCccccccccc--cccccchhhhhhhccc---ccc-------------ccccccch
Confidence 1335677777777665444 4444443322211000 000 00111122
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 643 RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 643 ~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
.+...+..+..+....+.+...+...+++++.+.+.+.++++++.+.+.|+|.|++. ..+.++|.++|+
T Consensus 241 ~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~-----------~~~~~~L~~~gi 309 (345)
T d1v72a1 241 MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD-----------SAMIDALLKAGF 309 (345)
T ss_dssp THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-----------HHHHHHHHHTTC
T ss_pred hhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC-----------HHHHHHHHHcCC
Confidence 234456666777788888888999999999999999999999998889999999874 246778899998
Q ss_pred EEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 723 LHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 723 ~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.+.. ...+...+ |+++.++|+||||+++++|++.
T Consensus 310 ~v~~--~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 310 GFYH--DRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp BCBC--SSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred Cccc--cCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6422 23355677 9999999999999999999864
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.04 E-value=5.3e-10 Score=116.88 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=110.9
Q ss_pred ccccccC---CCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 18 PRFHAYF---PSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 18 p~~~~~~---~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
|.+++|- +.+ .-|.++..|.....+. ...|...|.. .++.+++|+++|.+..-
T Consensus 2 ~~~~~f~s~n~~g-~~P~v~~A~~~a~~~~-~~~~~~~~~~----~~l~~~la~~~g~~~~v------------------ 57 (345)
T d1v72a1 2 PPALGFSSDNIAG-ASPEVAQALVKHSSGQ-AGPYGTDELT----AQVKRKFCEIFERDVEV------------------ 57 (345)
T ss_dssp CCCCBCSCGGGCC-CCHHHHHHHHHTTSSC-CCSTTCSHHH----HHHHHHHHHHHTSCCEE------------------
T ss_pred CCCcCcCCCCCCC-CCHHHHHHHHHHhccC-ccccCCCHHH----HHHHHHHHHHHCCCcEE------------------
Confidence 4455554 233 3578888876654332 2334445544 45566789999976431
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH---HHcCCeEEEEec
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---MMAFVRLKILEP 171 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa---~~~~~~v~~V~~ 171 (891)
.|++|||.+++. .+..++.. ...++.....|+++.... ...+..+..++.
T Consensus 58 ------------~f~~sGt~An~~-a~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (345)
T d1v72a1 58 ------------FLVPTGTAANAL-CLSAMTPP--------------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVD 110 (345)
T ss_dssp ------------EEESCHHHHHHH-HHHTSCCT--------------TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC
T ss_pred ------------EECCchHHHHHH-HHHHHHhc--------------CCccccccccceeeechhhHHHhcCcccccccc
Confidence 146899876543 33222221 223667788899987655 346678888888
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcce--EEEeecccCc--cccccCHHHHHHHHHHcCCceeeeccccCC
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPF--FVSTTLGTTS--CCSFDNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~--~V~~t~Gtt~--~GavDpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+.++.++++.+++.+.........|. ++..+.++.. .+.++++.++.++|+++|+++|+|+++++.
T Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~ 180 (345)
T d1v72a1 111 GPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFAN 180 (345)
T ss_dssp CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred cccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccce
Confidence 99999999999999987655444444 4444444433 345688899999999999999999999553
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=2.1e-07 Score=102.69 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=74.4
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
..|++....|.|+..++.....++..++ ..|.+++++.++...+.+....+|++-...+..|.+-||.+|.++|+
T Consensus 130 d~i~~d~~~h~s~~~G~~~~~a~~~~~~-----~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~ 204 (401)
T d1fc4a_ 130 DAIISDALNHASIIDGVRLCKAKRYRYA-----NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLAD 204 (401)
T ss_dssp CEEEEETTCCHHHHHHHHTSCSEEEEEC-----TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHH
T ss_pred cEEEeCCcchHHHHccccccCceEEEEc-----CCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHh
Confidence 3588889999999999988777777665 34788888888776666666667777666677899999999999999
Q ss_pred HcCCceeeeccccCCc
Q psy852 223 EFDVWLHVDGAYAGSS 238 (891)
Q Consensus 223 ~~~~~lHvDaA~GG~~ 238 (891)
+||+.+++|-|+|++.
T Consensus 205 ~~~a~LivDeah~~g~ 220 (401)
T d1fc4a_ 205 KYDALVMVDDSHAVGF 220 (401)
T ss_dssp HTTEEEEEECTTTTTT
T ss_pred hcCcEEEehhhhcccc
Confidence 9999999999997654
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.87 E-value=9.5e-07 Score=95.40 Aligned_cols=147 Identities=12% Similarity=-0.009 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..+.++..|....+ .| -++.+.++-..+.+.|.++++-+.... .+
T Consensus 11 v~~~V~~am~~~~~-----~h-r~~~f~~i~~~~~~~l~~ll~~~~~~i-----------------------------~~ 55 (348)
T d1iuga_ 11 LHPKALEALARPQL-----HH-RTEAAREVFLKARGLLREAFRTEGEVL-----------------------------IL 55 (348)
T ss_dssp CCHHHHHHHHSCCC-----CT-TSHHHHHHHHHHHHHHHHHHTCSSEEE-----------------------------EE
T ss_pred CCHHHHHHhcCCCC-----CC-CCHHHHHHHHHHHHHHHHHhCCCCCEE-----------------------------EE
Confidence 45667666544332 22 468888999999999999998653210 24
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH--HHcCCeEEEEecCCCCcccHHHHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA--MMAFVRLKILEPDDKNSLRGATLRQVM 186 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa--~~~~~~v~~V~~d~~g~id~~~L~~~l 186 (891)
++|||.+..+...++.+.. -.+++....|++-.-+. ...+.++..++.+..-..++++..
T Consensus 56 ~gsgT~a~e~~~~nl~~~g---------------~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~--- 117 (348)
T d1iuga_ 56 TGSGTLAMEALVKNLFAPG---------------ERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVA--- 117 (348)
T ss_dssp ESCHHHHHHHHHHHHCCTT---------------CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSC---
T ss_pred eCchHHHHHHHHHhccccc---------------ccceeecchHHHHHHHHHHHhcCcccccccccCCCcccccccc---
Confidence 6788766555555542211 11444456777753332 335567777776443334443321
Q ss_pred HhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcC--Cceeeeccc
Q psy852 187 QQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFD--VWLHVDGAY 234 (891)
Q Consensus 187 ~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~--~~lHvDaA~ 234 (891)
...+-.|+.++..|.+|.+.|+.+|+++|++++ ..++||+..
T Consensus 118 ------~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavs 161 (348)
T d1iuga_ 118 ------KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVT 161 (348)
T ss_dssp ------CSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTT
T ss_pred ------ccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhh
Confidence 122458999999999999999999999999985 456667654
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=98.81 E-value=2.2e-08 Score=112.06 Aligned_cols=248 Identities=8% Similarity=-0.055 Sum_probs=132.5
Q ss_pred ceEEEecccchHHHHHHHHHc-Cc--eEEEecCCCCC--------CcCHHHHHHHHHhh---hhc-CCccEEEE----ec
Q psy852 506 KLMAYCSKEAHSCVEKAAMMA-FV--RLKILEPDDKN--------SLRGATLRQVMQQD---ETM-GYIPFFVS----TT 566 (891)
Q Consensus 506 ~~vI~~S~~aH~Sv~Kaa~l~-gv--~v~~Vp~d~~G--------~mD~~~Le~aI~~d---~~~-g~ip~~Vv----at 566 (891)
.-.|+++..+|.|+..++.++ +. .++.+++|+.| .++.+.+++.+.+. .+. ...+..++ +.
T Consensus 106 gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 185 (462)
T d1c4ka2 106 GDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTY 185 (462)
T ss_dssp TCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCT
T ss_pred CCeEEecccchHHHHHHHHHHhcCCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeee
Confidence 346999999999999988643 43 44445566665 34555555544321 111 11122222 23
Q ss_pred CCccc--------hhh-----hhcC-------------------------CCCccEEEEcCcccCCcccccEEEEEeCCc
Q psy852 567 LGTTS--------CYR-----KSQG-------------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRY 608 (891)
Q Consensus 567 aGTT~--------c~~-----~ldG-------------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~ 608 (891)
.|+.. |++ ++|+ ...+|++++++||++++|.+++++..++..
T Consensus 186 ~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~ 265 (462)
T d1c4ka2 186 DGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSH 265 (462)
T ss_dssp TSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGG
T ss_pred ccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEecccc
Confidence 45543 333 1221 123599999999999999888777777653
Q ss_pred cchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC
Q psy852 609 KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 688 (891)
Q Consensus 609 ~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~ 688 (891)
............+... +.....+.+...-..++. .+...+..+...+.+++.+++++++.+++++++++.....
T Consensus 266 ~~~~~~~~~~~~~~~~----~~~~~t~sp~~~~~asl~--~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~ 339 (462)
T d1c4ka2 266 IKGQLRYCDHKHFNNS----FNLFMSTSPFYPMYAALD--VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFV 339 (462)
T ss_dssp GTTSTTCCCHHHHHHH----HHHHSCSSCCHHHHHHHH--HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESS
T ss_pred ccccchhhhHHHHHHh----hhhcccCCchHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 2111000000000000 000000000000011111 2233344556677788889999999999988765432110
Q ss_pred C--------------------------------------------ceeEEEEEecCCcc-----hhhhhhHHHHHHHHHh
Q psy852 689 V--------------------------------------------RLGLVCFRLRSENN-----LIADQNNRKLLEDINA 719 (891)
Q Consensus 689 ~--------------------------------------------~~~iV~Fr~~~~~~-----~~~d~ln~~L~~~L~~ 719 (891)
+ +..-+.+..++... .........+.+.|.+
T Consensus 340 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~ 419 (462)
T d1c4ka2 340 PPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRD 419 (462)
T ss_dssp CSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHH
T ss_pred ccccccccccccchHhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHH
Confidence 0 00112333222110 0001123566777878
Q ss_pred CCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 720 SGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 720 ~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
.|+. ....+.+.+ ++++..+|++|||+++++|+++.+..+
T Consensus 420 ~gI~----~e~~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~ 460 (462)
T d1c4ka2 420 HGII----PEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 460 (462)
T ss_dssp TTCC----CSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCe----eeccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHh
Confidence 8876 444556666 999999999999999999999986543
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.80 E-value=1e-07 Score=106.12 Aligned_cols=268 Identities=13% Similarity=0.073 Sum_probs=164.6
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH----HHHH
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV----EKAA 523 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv----~Kaa 523 (891)
+--.+...|.++-|+++++--...|..+-+.+++.+|.... ++ .++++...|++. ...|
T Consensus 109 ~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~--~~---------------~~~v~~~~~p~~~~v~~t~a 171 (437)
T d1wyua1 109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETG--RM---------------GVLVSQGVHPEYRAVLRAYL 171 (437)
T ss_dssp HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHT--CC---------------EEEEETTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhc--cc---------------ccccccccChHHhhhhhhhc
Confidence 33344555555566777764445566777788877765321 11 255677777543 3334
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE----ecCCccc-----hhh-h--------------hcCC
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS----TTLGTTS-----CYR-K--------------SQGI 579 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~-----c~~-~--------------ldGi 579 (891)
...|++++.||.++.+..+ ++ +++++ ..|+ ++.|... +.. | +-++
T Consensus 172 ~~~g~~vv~v~~~~~~~~~-~~----~~~~~------Aavmi~~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l 240 (437)
T d1wyua1 172 EAVGAKLLTLPLEGGRTPL-PE----VGEEV------GAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVL 240 (437)
T ss_dssp HHTTCEEEEECCBTTBCCC-CC----CCTTE------EEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTB
T ss_pred ccceeeEEeeecccccchh-hh----hccce------eEEEEccccccccccchHHHHHHhhhccceEEeeechhhhhcc
Confidence 5689999999987654433 22 23332 2232 3445544 110 1 1112
Q ss_pred -----CCccEEEEcCcccCCccccc-----EEEEEeCCccchhhhccCCCcccc---CCCCCccccCCcc----------
Q psy852 580 -----EYADSFNVNVNKWLLTAFDS-----SCLWVADRYKLTSALVVDPLYLQH---GHEGAIDYRHWGI---------- 636 (891)
Q Consensus 580 -----~~aDSIs~d~HK~L~~P~g~-----G~llvR~~~~L~~~l~~~~~Yl~~---~~e~~~~~~~~ti---------- 636 (891)
-+||-+..+ ||-+++|.+. |.+.+|++ +.+.+ +..+-. +.++...+ .+++
T Consensus 241 ~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~--l~r~l---Pgrivg~s~d~~G~~~~-~l~lqtreqhIrRe 313 (437)
T d1wyua1 241 KPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKA--FVRQL---PGRLVSETVDVEGRRGF-ILTLQAREQYIRRA 313 (437)
T ss_dssp CCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGG--GGGGC---CSCCEEEEEBTTSCEEE-EECCGGGSHHHHGG
T ss_pred ccccccccceEeec-cceeccccCCCcCccccccccch--hhccc---cccccccccccCCcccc-eeeccccccccccc
Confidence 258999899 7778888876 88888865 22211 222111 00010000 0000
Q ss_pred -----ccccc-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhh
Q psy852 637 -----PLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQN 709 (891)
Q Consensus 637 -----~~SRr-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~l 709 (891)
-|+-. +-++..|..+..+|.+|++++.++.+.+|+|+.++|+++++++++.+ +-++-++++.. ..
T Consensus 314 katsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~--------~~ 385 (437)
T d1wyua1 314 KAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP--------KD 385 (437)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS--------SC
T ss_pred ccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECC--------CC
Confidence 11111 22577899999999999999999999999999999999999998653 44565555552 24
Q ss_pred HHHHHHHHHhCCcEEEee-ccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 710 NRKLLEDINASGRLHMVP-ASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~-s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.+.+.++|.+.|+..-+. ........+ +++....|++|||+++++|+++
T Consensus 386 ~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~ei 436 (437)
T d1wyua1 386 PEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEV 436 (437)
T ss_dssp HHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 567889999999752111 122334566 9998889999999999999886
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=8e-07 Score=97.28 Aligned_cols=88 Identities=19% Similarity=0.131 Sum_probs=72.6
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
..|++-+..|.|+..+++..+.+++..+ .-|+++|++.+.+... ...+|+.-...+..|.+-|+.+|.++|+
T Consensus 123 d~v~~d~~~h~si~~g~~~~~~~~~~~~-----hnd~~~le~~l~~~~~---~~~~vv~e~v~s~~G~i~pl~~l~~l~~ 194 (383)
T d1bs0a_ 123 DRIAADRLSHASLLEAASLSPSQLRRFA-----HNDVTHLARLLASPCP---GQQMVVTEGVFSMDGDSAPLAEIQQVTQ 194 (383)
T ss_dssp CEEEEETTCCHHHHHHHHTSSSEEEEEC-----TTCHHHHHHHHHSCCS---SCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred ceEEeeccccHHHhhccccCCCcceEec-----chHHHHHHHHhcccCC---CceEEEecCCCCCCCcccchhHHHHHHH
Confidence 3578888999999999988777777766 4588999999876542 2357777788888999999999999999
Q ss_pred HcCCceeeeccccCCc
Q psy852 223 EFDVWLHVDGAYAGSS 238 (891)
Q Consensus 223 ~~~~~lHvDaA~GG~~ 238 (891)
+||++++||-|+|...
T Consensus 195 ~~~~~livDeah~~gv 210 (383)
T d1bs0a_ 195 QHNGWLMVDDAHGTGV 210 (383)
T ss_dssp HTTCEEEEECTTTTTT
T ss_pred hcCcEEEeecceeeee
Confidence 9999999999996543
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.79 E-value=7.1e-08 Score=104.15 Aligned_cols=82 Identities=6% Similarity=0.011 Sum_probs=71.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.++..++...|.+.+.+++|. .+.||+++|++++.+.+ -+|+++ +..|..-|+.+|.++|+
T Consensus 73 eVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~t------kaIi~~---h~~G~~~~~~~i~~i~~ 143 (376)
T d1mdoa_ 73 EVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQT------KAIIPV---HYAGAPADLDAIYALGE 143 (376)
T ss_dssp EEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTE------EEECCB---CGGGCCCCHHHHHHHHH
T ss_pred EEEEecccccccccchhccccceeeecccccccCCCHHHHHHhcCCCC------eEEEEe---CCCCCccchhHHHHHHH
Confidence 489999999999999988888999999996 57899999999997654 355544 56788899999999999
Q ss_pred HcCCceeeeccc
Q psy852 223 EFDVWLHVDGAY 234 (891)
Q Consensus 223 ~~~~~lHvDaA~ 234 (891)
++|++|..|+|+
T Consensus 144 ~~~i~vIeD~a~ 155 (376)
T d1mdoa_ 144 RYGIPVIEDAAH 155 (376)
T ss_dssp HHTCCBCEECTT
T ss_pred hcCceEEeccch
Confidence 999999999998
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=98.78 E-value=4.5e-08 Score=100.31 Aligned_cols=258 Identities=10% Similarity=0.037 Sum_probs=149.3
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH-
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM- 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l- 525 (891)
++.+.+++.+...+ -+|+ +++||||+|+.++..+.. +.-.++.....|.+.......
T Consensus 39 ~lr~~ia~~~g~~~-~~v~--~tsggtean~~a~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 96 (340)
T d1svva_ 39 KAARLIGELLERPD-ADVH--FISGGTQTNLIACSLALR-------------------PWEAVIATQLGHISTHETGAIE 96 (340)
T ss_dssp HHHHHHHHHHTCTT-SEEE--EESCHHHHHHHHHHHHCC-------------------TTEEEEEETTSHHHHSSTTHHH
T ss_pred HHHHHHHHHhCCCc-ceEE--EcCCHHHHHHHHHHHHhh-------------------hccccccccccceeeeeccccc
Confidence 34456677776544 3777 889999999988776432 222466777788887665542
Q ss_pred -cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cE-EEEe--cC-Cccc-----------hhh-----hhcC-----
Q psy852 526 -AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PF-FVST--TL-GTTS-----------CYR-----KSQG----- 578 (891)
Q Consensus 526 -~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~-~Vva--ta-GTT~-----------c~~-----~ldG----- 578 (891)
.+.....++. .....+.+....+.......... +. +++. +. |+.. |.+ ++|.
T Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~ 175 (340)
T d1svva_ 97 ATGHKVVTAPC-PDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLAS 175 (340)
T ss_dssp HTTCCEEEECC-TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHH
T ss_pred ccceeeeeccc-ccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceee
Confidence 2333333333 33455666666665554333322 22 2222 12 2221 111 1111
Q ss_pred --------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccc
Q psy852 579 --------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRS 644 (891)
Q Consensus 579 --------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~a 644 (891)
....+..++.++|.++.+.. ................ .. ...+....+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~ 236 (340)
T d1svva_ 176 ALSSPVNDLTLADIARLTDMFYIGATKAGGMFGE--ALIILNDALKPNARHL-IK----------------QRGALMAKG 236 (340)
T ss_dssp HHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCE--EEEECSGGGCTTHHHH-HH----------------HTTCCCTTT
T ss_pred eecccccccccccccccceeeecCCccccccccc--cccccchhhhhhhhhh-cc----------------cccCccchh
Confidence 12247788888887776653 3333332211110000 00 000000011
Q ss_pred hHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 645 LKLWFV-IRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 645 L~lW~~-L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
..++++ +..+...+.....++...+++++...|+. .+++++.+.+.++|.+++.+ ...++|.+++..
T Consensus 237 ~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~p~~~~~v~~~~~~-----------~~~~~l~~~~~~ 304 (340)
T d1svva_ 237 WLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEA-CGIRLAWPSASNQLFPILEN-----------TMIAELNNDFDM 304 (340)
T ss_dssp HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH-TTCCBSSCCSSSEECBEEEH-----------HHHHHHTTTEEC
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhc-CCCeeecCCCceEEEEeCCH-----------HHHHHHHHhhhh
Confidence 112222 22345667777888889999999999988 58888888889999887742 345566666665
Q ss_pred EEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 724 HMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 724 ~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
...+....+...+ ||+++++|++|||+++++|+++
T Consensus 305 ~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 305 YTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp EEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred hcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5555666677788 9999999999999999999874
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=1.2e-07 Score=106.12 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=90.7
Q ss_pred ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhc
Q psy852 48 SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQ 127 (891)
Q Consensus 48 ~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~ 127 (891)
.|..+|...++|+ .+++++|.+... ++++|+.++...+..+....
T Consensus 69 ~Y~~~~~~~~le~----~~a~l~G~~~~~-------------------------------~~~sGt~A~~~a~~~~~~~g 113 (467)
T d2v1pa1 69 AFSGSRSYYALAE----SVKNIFGYQYTI-------------------------------PTHQGRGAEQIYIPVLIKKR 113 (467)
T ss_dssp CSSSCHHHHHHHH----HHHHHTCCSEEE-------------------------------EECSSTTTHHHHHHHHHHHH
T ss_pred hhcCCchHHHHHH----HHHHHHCCCEEE-------------------------------ECCCCHHHHHHHHHHHhhcc
Confidence 4566899889986 468888886431 34577655444333332111
Q ss_pred cccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC----------CCcccHHHHHHHHHhhhhcCCcce
Q psy852 128 KKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD----------KNSLRGATLRQVMQQDETMGYIPF 197 (891)
Q Consensus 128 ~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~----------~g~id~~~L~~~l~~~~~~g~~p~ 197 (891)
.. .......-.+..+...|+....++.+.|..++.++.+. .+.+|+++|++.+++.... .++
T Consensus 114 ~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~-~~~- 185 (467)
T d2v1pa1 114 EQ------EKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN-NVP- 185 (467)
T ss_dssp HH------HHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGG-GCC-
T ss_pred ce------EecCCCCcEEEEecccccccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCcc-ccc-
Confidence 00 00001111255566667777666678888888887653 5789999999999875432 222
Q ss_pred EEEeecccCccc----cccCHHHHHHHHHHcCCceeeeccc
Q psy852 198 FVSTTLGTTSCC----SFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 198 ~V~~t~Gtt~~G----avDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+|+....++..| .++++++|+++|++||++||+|+|+
T Consensus 186 ~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~ 226 (467)
T d2v1pa1 186 YIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSAR 226 (467)
T ss_dssp CEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred eeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 333333333333 4578999999999999999999997
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.74 E-value=2.3e-07 Score=104.35 Aligned_cols=286 Identities=14% Similarity=0.087 Sum_probs=176.3
Q ss_pred CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCC
Q psy852 460 PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN 539 (891)
Q Consensus 460 ~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G 539 (891)
-|.++.+--...|..+...|+..|+.....+.+ .....+++.+...|..........+..++.++.+..+
T Consensus 119 TGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (471)
T d1wyub1 119 TGMDAITLEPAAGAHGELTGILIIRAYHEDRGE----------GRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEG 188 (471)
T ss_dssp HTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTC----------TTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTS
T ss_pred hCCCccccccchHHHHHHHHHHHHHHHhhhccc----------ccccccccCCcccccceeeeeecccceeecccccccc
Confidence 455666544445556667777666654433221 1233456666667767766667788899999999999
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc------h---hh-----hhc--------CC-----CCccEEEEcC
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS------C---YR-----KSQ--------GI-----EYADSFNVNV 589 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~------c---~~-----~ld--------Gi-----~~aDSIs~d~ 589 (891)
..|.+.++..++++.+ .+++ ++.|... | ++ .++ ++ .++|-+.+..
T Consensus 189 ~~~~~~~~~~~~~~~a-----~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~ 263 (471)
T d1wyub1 189 EVDLEALKRELGPHVA-----ALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNL 263 (471)
T ss_dssp SBCHHHHHHHCSTTEE-----EEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCT
T ss_pred cccchhhhhhhhcccc-----ceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccCccccccccccc
Confidence 9999999988776532 2222 2344443 1 11 011 11 4579999999
Q ss_pred cccCCcccc-----cEEEEEeCCccchhhhccCC-----C-ccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHh
Q psy852 590 NKWLLTAFD-----SSCLWVADRYKLTSALVVDP-----L-YLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS 657 (891)
Q Consensus 590 HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~-----~-Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~ 657 (891)
|+.++.|.+ +|++-++++ +.+.+-+.. . |+...+ ...+++-- -.|+-. +-++..+..+..+|.+
T Consensus 264 ~q~~G~P~~~GGP~~G~~a~~~~--~~R~~PGRiV~~~~~~~~~~~~-REqhIrRe-~actnqaL~al~A~vYlsllG~~ 339 (471)
T d1wyub1 264 HKTFTVPHGGGGPGSGPVGVKAH--LAPYLPVPLVERGEEGFYLDFD-RPKSIGRV-RSFYGNFLALVRAWAYIRTLGLE 339 (471)
T ss_dssp TTTTCCCCTTSCCCCCCEEECGG--GGGGCCSCEEEECSSCEEEECC-CTTCCCCS-SSTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccceeehhh--hhccCCCceecCCCccccccCC-Ccccccch-hhhhhhHHHHHHHHHHHHHhCch
Confidence 999988854 556666654 333222110 0 000000 00011100 012221 3357788889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec-cccCCeE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA-SQEQNDE 735 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s-~~~g~~~ 735 (891)
|+++..+.++.+|+|+.++|+. +++++..+ +-.+-..++.+. +.....+.++|.+.|+.-.+.. .......
T Consensus 340 GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~ff~EFvv~~~~------~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~ 412 (471)
T d1wyub1 340 GLKKAAALAVLNARYLKELLKE-KGYRVPYDGPSMHEFVAQPPE------GFRALDLAKGLLELGFHPPTVYFPLIVKEA 412 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSCCSCEEEBCST------TCCHHHHHHHHHHTTCCCCEESCSTTSTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHhh-cCceeccCcceeeEEeecCCC------CCCHHHHHHHHHHcCCCCCcccCcCCCCCe
Confidence 9999999999999999999976 79988643 333333333321 2234567888888887521111 1123344
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCc
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRMLGLVCFRLRSENN 771 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~~~~~~~l~~~~~ 771 (891)
+ |++.-..|++|||+++++|+++.+.-.+.++..+.
T Consensus 413 llv~vTE~~tkedID~lv~aL~~i~~e~~~~~~~ap~ 449 (471)
T d1wyub1 413 LMVEPTETEAKETLEAFAEAMGALLKKPKEWLENAPY 449 (471)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHHTSCHHHHHTCCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhhHHHHHhCCc
Confidence 5 88888889999999999999998766666666665
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=2.3e-08 Score=106.46 Aligned_cols=274 Identities=10% Similarity=-0.034 Sum_probs=150.6
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHHHHcCc
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAMMAFV 528 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa~l~gv 528 (891)
.+++.++..++.+++ +++|++++++.+.... .. .++.++++....++. +...+...+.
T Consensus 54 ~l~~l~~~~~~~~v~--~~~gs~t~~~~a~~~~---~~---------------~~~~~v~~~~~~~~~~~~~~~~~~~~~ 113 (360)
T d1bjna_ 54 DFRDLLNVPSNYKVL--FCHGGGRGQFAAVPLN---IL---------------GDKTTADYVDAGYWAASAIKEAKKYCT 113 (360)
T ss_dssp HHHHHHTCCTTEEEE--EESSHHHHHHHHHHHH---HC---------------TTCCEEEEEESSHHHHHHHHHHTTTSE
T ss_pred HHHHHhCCCCCCEEE--EECCchHHHHhhhhhc---cc---------------ccccccceecccchhhhhHHHHhhcCc
Confidence 566666665666777 6778777776554321 11 112233443333322 2222334566
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc------hhh-----hhcC----------CCCccEE
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS------CYR-----KSQG----------IEYADSF 585 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~------c~~-----~ldG----------i~~aDSI 585 (891)
.++.+..+.++..+.+.+++.+..... ...++. ++.|+.. |.. .+|+ ...+|..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~v~~~~~~t~~~~~~~~i~~~~~~~~v~vDa~~~~~~~~vd~~~~dv~ 190 (360)
T d1bjna_ 114 PNVFDAKVTVDGLRAVKPMREWQLSDN---AAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTILSRPIDVSRYGVI 190 (360)
T ss_dssp EEEEECEEEETTEEEECCGGGCCCCSS---CSCEEECSEETTTTEECCCCCCCCTTCCEEEECTTTTTSSCCCGGGCSEE
T ss_pred cceeeccccCCCcchhhhhhhhccCCc---eeEEEecccccccCccccceecccccceeeeeeeccccceeeeeccceeE
Confidence 666666666666666666555544322 222222 2233333 111 1222 2457999
Q ss_pred EEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccc-cccchHHHHHHHHHHHhhHHHHHH
Q psy852 586 NVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIR 664 (891)
Q Consensus 586 s~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~~i~ 664 (891)
.++.||+++.|-+.+.+++...............+.... ..... ...... ..........+......+.....+
T Consensus 191 ~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (360)
T d1bjna_ 191 YAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSIL----NDNGS-MFNTPPTFAWYLSGLVFKWLKANGGVAEMDK 265 (360)
T ss_dssp EEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHH----HHTTT-CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred EEEcccccccCCCceeEeeehhhhhccccCCcchhhHHH----Hhhhh-hccccccchHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999999999988876543221111110110000 00000 000000 011122233334445556666777
Q ss_pred HHHHHHHHHHHHhccCCCcEEeCCC---ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEEEEecC
Q psy852 665 RHCELAKLFEGKVRRDPRFEISNDV---RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEVFELQE 741 (891)
Q Consensus 665 ~~~~lA~~L~~~L~~~~~~eil~~~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~sv~~ 741 (891)
+..++++++...+...........+ ..++++|.+++ +...+.+.+.|.+.|+....+....+ .+.+|+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~------~~~~~~~~~~l~~~Gi~~~~G~~~~g-~~Ris~~~ 338 (360)
T d1bjna_ 266 INQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLAD------SALDKLFLEESFAAGLHALKGHRVVG-GMRASIYN 338 (360)
T ss_dssp HHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESS------GGGHHHHHHHHHHTTEECCBCCTTTC-SEEEECCT
T ss_pred HHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCC------cccHHHHHHHHHHCCCEeecCCCccC-eEEEEecC
Confidence 7777777777777766554444332 24789999963 23557788889999987555432222 23399999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 742 ~tT~edId~li~~L~ei~ 759 (891)
++|+|||++++++|++..
T Consensus 339 ~~t~edV~~li~~l~e~~ 356 (360)
T d1bjna_ 339 AMPLEGVKALTDFMVEFE 356 (360)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999999864
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.71 E-value=2.2e-08 Score=107.30 Aligned_cols=152 Identities=11% Similarity=-0.045 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHhcCCCCC-------ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCC
Q psy852 29 SYPSVLADMLSDAIGCIGF-------SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMT 101 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~-------~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t 101 (891)
.+++++..|...++|.++. +| -+|.+.++-.++.+.|++++|.|++.. ++
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sH-Rs~~~~~~~~~~r~~l~~l~~~~~~~~--------i~-------------- 70 (360)
T d1w23a_ 14 LPKPALERAQKELLNFNDTQMSVMELSH-RSQSYEEVHEQAQNLLRELLQIPNDYQ--------IL-------------- 70 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCT-TSHHHHHHHHHHHHHHHHHHTCCTTEE--------EE--------------
T ss_pred CCHHHHHHHHHHHHhhcccCccccccCc-CCHHHHHHHHHHHHHHHHHhCCCCCCE--------EE--------------
Confidence 4688888888877664332 23 378899999999999999999986531 11
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH-HH--cCCeEEEEecCCCCccc
Q psy852 102 PANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MM--AFVRLKILEPDDKNSLR 178 (891)
Q Consensus 102 ~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa-~~--~~~~v~~V~~d~~g~id 178 (891)
+++|++ +.+ +.+....... .+..+.+.. .|....+.+ .. .+..++.+........+
T Consensus 71 ------~~~gt~-~~~-~~~~~~~~~~------------~~~~v~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (360)
T d1w23a_ 71 ------FLQGGA-SLQ-FTMLPMNLLT------------KGTIGNYVL-TGSWSEKALKEAKLLGETHIAASTKANSYQS 129 (360)
T ss_dssp ------EESSHH-HHH-HHHHHHHHCC------------TTCEEEEEE-CSHHHHHHHHHHHTTSEEEEEEECGGGTSCS
T ss_pred ------EeCCcH-HHH-HHHHHhhhcc------------cCcccceee-ccchhhhhHHHHHHhhhcceeeccccccccc
Confidence 223332 222 2222211111 111233333 344444444 22 33344444433333334
Q ss_pred HHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 179 ~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++.++..+. .+..++.+|.+|++.|+.+|+++|+++|+.++|||++
T Consensus 130 ~~~~~~~~~----------~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavq 175 (360)
T d1w23a_ 130 IPDFSEFQL----------NENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSS 175 (360)
T ss_dssp CCCGGGCCC----------CTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTT
T ss_pred hhhhhhccc----------ccccceeEecCCccccceeeeeccccceeeEEeeccc
Confidence 444333222 2234577788999999999999999999999999988
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=4.1e-08 Score=102.39 Aligned_cols=261 Identities=14% Similarity=0.106 Sum_probs=150.0
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH-
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM- 524 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~- 524 (891)
.++.+.+++.+.. +. ++ +++|||++|+.++.+++.. .-.+++....|++......
T Consensus 37 ~~le~~lA~~~G~-~~--~~--~~~sGt~A~~~al~a~~~~-------------------g~~~~~~~~~~~~~~~~~~~ 92 (343)
T d1m6sa_ 37 NELERLAAETFGK-EA--AL--FVPSGTMGNQVSIMAHTQR-------------------GDEVILEADSHIFWYEVGAM 92 (343)
T ss_dssp HHHHHHHHHHTTC-SE--EE--EESCHHHHHHHHHHHHCCT-------------------TCEEEEETTCHHHHSSTTHH
T ss_pred HHHHHHHHHHHCC-Ce--EE--EeCCHHHHHHHHHHHHhcc-------------------CCceeccccccceeeecccc
Confidence 3444566666654 32 33 5678999999998765431 1135566666766654332
Q ss_pred --HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCcc--EEEEecC----Cccc-----------hhhh-----hc---
Q psy852 525 --MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIP--FFVSTTL----GTTS-----------CYRK-----SQ--- 577 (891)
Q Consensus 525 --l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip--~~Vvata----GTT~-----------c~~~-----ld--- 577 (891)
..+..++.++. ..+..|++.+++.+.........+ +.+.... |... |.++ +|
T Consensus 93 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~ 171 (343)
T d1m6sa_ 93 AVLSGVMPHPVPG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGAR 171 (343)
T ss_dssp HHHTCCEEEEECE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred cccccceeecccc-ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecccc
Confidence 34556666665 457789999999998766554332 2222222 1111 2221 11
Q ss_pred --------------CCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccccc
Q psy852 578 --------------GIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR 643 (891)
Q Consensus 578 --------------Gi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~ 643 (891)
.....+..+++.+|.+++..+.+.+..++. .......... ...+. +....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~------------~~~~~--~~~~~ 235 (343)
T d1m6sa_ 172 IFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDF--IERARKARKM------------LGGGM--RQAGV 235 (343)
T ss_dssp HHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHH--HHHHHHHHHH------------HTCCC--SSTHH
T ss_pred ccccccccccchhhhccccccccccccccccccccccccccHHH--HhhhHhhCcc------------ccccc--chhHH
Confidence 124468889999998887765444433222 1111000000 00011 11111
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
....+.......... .+...++++++.+.+.++.......+...++|+|.+.+. +....++.+.|.++|++
T Consensus 236 ~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~a~~l~~~L~~~Gi~ 306 (343)
T d1m6sa_ 236 LAAAGIIALTKMVDR----LKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNL-----KVNAHGFIEALRNSGVL 306 (343)
T ss_dssp HHHHHHHHHHHSSTT----HHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTS-----SSCHHHHHHHHHHHTEE
T ss_pred HHHhhhhhhhhhHHH----HHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCC-----cccHHHHHHHHHHCCCE
Confidence 222233322222232 333445556666666665666566666788999998654 33567899999999987
Q ss_pred EEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 724 HMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 724 ~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.. + -+...+ ++++..+|+||||+++++|+++.+
T Consensus 307 v~-~---~~~~~iRi~~~~~~t~edid~~v~~l~~v~~ 340 (343)
T d1m6sa_ 307 AN-A---VSDTEIRLVTHKDVSRNDIEEALNIFEKLFR 340 (343)
T ss_dssp CE-E---EETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred Ee-c---CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 32 2 134456 999999999999999999999875
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=98.65 E-value=5.3e-07 Score=101.03 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=83.5
Q ss_pred CccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHh
Q psy852 47 FSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRG 126 (891)
Q Consensus 47 ~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~ 126 (891)
.+|..+|...++|+.+ ++++|.... .++++|+.++......+ .
T Consensus 69 d~Y~~dpt~~~lE~~~----a~l~G~e~a-------------------------------l~~~SGt~An~~a~~~l--~ 111 (456)
T d1c7ga_ 69 EAYAGSENFYHLEKTV----KELFGFKHI-------------------------------VPTHQGRGAENLLSQLA--I 111 (456)
T ss_dssp CCSSSCHHHHHHHHHH----HHHHCCSEE-------------------------------EEESSHHHHHHHHHHHH--C
T ss_pred hhccCCchHHHHHHHH----HHHhCCCeE-------------------------------EECCCHHHHHHHHHHHh--c
Confidence 4577899999999765 667787643 23567875443322222 1
Q ss_pred ccccCCccccccccCCeEEEecCCCChHHHHHH-HHcCCeEEEEec----------CCCCcccHHHHHHHHHhhhhcCCc
Q psy852 127 QKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MMAFVRLKILEP----------DDKNSLRGATLRQVMQQDETMGYI 195 (891)
Q Consensus 127 ~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa-~~~~~~v~~V~~----------d~~g~id~~~L~~~l~~~~~~g~~ 195 (891)
++ .-.|++. .|+--..+. ...+...+.+.+ ..+|.+|+++|++.|++..+. .
T Consensus 112 ~~-------------Gd~Vi~~--~~f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~--~ 174 (456)
T d1c7ga_ 112 KP-------------GQYVAGN--MYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE--N 174 (456)
T ss_dssp CT-------------TEEEEES--SCCHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG--G
T ss_pred CC-------------CCeEecC--cchHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCc--c
Confidence 11 1134543 243222222 334444444433 236889999999999876432 2
Q ss_pred ceEEEeecccCccc----cccCHHHHHHHHHHcCCceeeeccc
Q psy852 196 PFFVSTTLGTTSCC----SFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 196 p~~V~~t~Gtt~~G----avDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+.+++.+.-+|..| ..+++.+|.++|++||+.+|+|+|.
T Consensus 175 ~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~ 217 (456)
T d1c7ga_ 175 IAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATR 217 (456)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcch
Confidence 33555555555555 4578899999999999999999997
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=2.3e-07 Score=101.84 Aligned_cols=259 Identities=13% Similarity=0.103 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHhcCCC-----CCcc-ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q psy852 30 YPSVLADMLSDAIGCI-----GFSW-AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPA 103 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~-----~~~~-~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~ 103 (891)
.|.++..+-+.+.|-. +..| .+.-...++|..+.+...++||...... -
T Consensus 39 S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anV-----------------------q-- 93 (416)
T d1dfoa_ 39 SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANV-----------------------Q-- 93 (416)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-----------------------C--
T ss_pred CHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCccee-----------------------e--
Confidence 3555555555554433 2223 3456789999999999999999854321 0
Q ss_pred CCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEE---ecCCCChHHHHHHHH--cCCeEEEEecCCCCccc
Q psy852 104 NQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAY---CSKEAHSCVEKAAMM--AFVRLKILEPDDKNSLR 178 (891)
Q Consensus 104 ~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~---~S~~~H~Sv~kaa~~--~~~~v~~V~~d~~g~id 178 (891)
..+|+.++.+....+ -+ | ...|+ .+.-.|.+-...+.. ...+.+..++|++|.||
T Consensus 94 -----p~SGs~AN~av~~Al--l~----p---------GD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~ID 153 (416)
T d1dfoa_ 94 -----PHSGSQANFAVYTAL--LE----P---------GDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHID 153 (416)
T ss_dssp -----CSSHHHHHHHHHHHH--CC----T---------TCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBC
T ss_pred -----cccCccHHHHHHHHh--cC----C---------CCeeeeccccccccccccccccccCceEEEEecccCCccCcc
Confidence 135654433323332 11 1 11122 233446554332211 12467777889999999
Q ss_pred HHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCC
Q psy852 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLH 258 (891)
Q Consensus 179 ~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~ 258 (891)
.+++++.+++.+ |-+|++ |.+...-.-|++++++||++.|.++++|+|+ +.|+
T Consensus 154 yd~l~~~a~~~k-----PklIi~--G~S~y~r~~d~~~~reiad~vga~l~~D~aH-------------~~GL------- 206 (416)
T d1dfoa_ 154 YADLEKQAKEHK-----PKMIIG--GFSAYSGVVDWAKMREIADSIGAYLFVDMAH-------------VAGL------- 206 (416)
T ss_dssp HHHHHHHHHHHC-----CSEEEE--ECSSCCSCCCHHHHHHHHHHTTCEEEEECTT-------------THHH-------
T ss_pred HHHHHHHHHHhc-----cceEEe--cccccccccCHHHHHHHHHhcCceEEcchhh-------------hhcc-------
Confidence 999999988764 666653 4566777788999999999999999999998 0010
Q ss_pred CCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEee
Q psy852 259 LSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVD 338 (891)
Q Consensus 259 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 338 (891)
T Consensus 207 -------------------------------------------------------------------------------- 206 (416)
T d1dfoa_ 207 -------------------------------------------------------------------------------- 206 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccc-cchhhcccCccccCCCCCCcccccccccCC
Q psy852 339 GAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRY-KLTSALVVDPLYLQHGHEGAIDYRHWGIPL 417 (891)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 417 (891)
.+++.+.+ -++++|.+|.+.||.+-+|-+ |++++++.. .+...+ +... -.++++
T Consensus 207 --Ia~g~~~s--------P~~~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i--~~av------------fPg~qg 261 (416)
T d1dfoa_ 207 --VAAGVYPN--------PVPHAHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKL--NSAV------------FPGGQG 261 (416)
T ss_dssp --HHHTSSCC--------CTTTSSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHH--HHHH------------TTTTCS
T ss_pred --eeccccCC--------cccccceeeeehhhcccCCCc-eEEEeccchHhHHHHH--Hhhh------------Cccccc
Confidence 01111111 234689999999999999976 888887542 221111 1000 123334
Q ss_pred CCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 418 SRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 418 sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
+-... ..++-.+++..-...|.+..++.+++|+.|++.|.+ .||+|+.
T Consensus 262 gp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~-~G~~iv~ 310 (416)
T d1dfoa_ 262 GPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLE-RGYKVVS 310 (416)
T ss_dssp SCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGG
T ss_pred CccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh-CCccccc
Confidence 44443 344566677777778899999999999999999987 4888873
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=5.7e-08 Score=107.01 Aligned_cols=292 Identities=12% Similarity=0.045 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchH
Q psy852 439 QKYIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHS 517 (891)
Q Consensus 439 ~~ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~ 517 (891)
+....+.++-+| .+++.|...+.-+++ ++.++|+++...+........ .+.-.|+++..+|+
T Consensus 61 ~~~~~~~~e~~R~~ia~~l~~~~~~~i~--~~~~~T~~~~~~~~~~~~~~~---------------~~g~~il~~~~e~~ 123 (405)
T d1jf9a_ 61 SAQATEKMENVRKRASLFINARSAEELV--FVRGTTEGINLVANSWGNSNV---------------RAGDNIIISQMEHH 123 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCGGGEE--EESSHHHHHHHHHHHHHHHHC---------------CTTCEEEEETTCCG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccc--ccCcHHHHHHHHHhccccccc---------------CCCCEEEEEeCccc
Confidence 334455666666 778888765544666 778899998877655433221 12346999999999
Q ss_pred HHHHHHH----HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------hhh-----hhc
Q psy852 518 CVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYR-----KSQ 577 (891)
Q Consensus 518 Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~-----~ld 577 (891)
|+..+++ -.|++++.+|++++|.+|++.+++++++.+. .+.+ .+..|+.. |++ ++|
T Consensus 124 s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~t~----lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD 199 (405)
T d1jf9a_ 124 ANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTR----LLAITHVSNVLGTENPLAEMITLAHQHGAKVLVD 199 (405)
T ss_dssp GGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEE----EEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCCcE----EEEEecCCCcccccCchHHhhhHHHHcCCeeecc
Confidence 8777664 3589999999999999999999999887532 2222 22345444 443 355
Q ss_pred CC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCcccc---CC-CC--CccccCCccc-c
Q psy852 578 GI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQH---GH-EG--AIDYRHWGIP-L 638 (891)
Q Consensus 578 Gi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~---~~-e~--~~~~~~~ti~-~ 638 (891)
|. -.+|.+++++|||+ +|.|+|++|++++.. +.+.....+... .. .. .+......++ +
T Consensus 200 ~~q~~g~~~id~~~~~~D~~~~s~hK~~-Gp~G~g~l~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~G 276 (405)
T d1jf9a_ 200 GAQAVMHHPVDVQALDCDFYVFSGHKLY-GPTGIGILYVKEALL--QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAG 276 (405)
T ss_dssp CTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCSSCEEEEECHHHH--TTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCS
T ss_pred cceeccccccchhhcCCceeeccccccc-cCCCceeeeechhhh--cccCcccccccccCccccccccccccchhhhcCC
Confidence 53 23799999999996 699999999987521 111100000000 00 00 0000001111 2
Q ss_pred ccccc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHH
Q psy852 639 SRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLED 716 (891)
Q Consensus 639 SRr~~-aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~ 716 (891)
++.+. .+.+..+++.+-..|++.+.++...+++++.+.++..+...+..+ ...++|+|.+++. ..+.+...
T Consensus 277 T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~-------~~~~~~~~ 349 (405)
T d1jf9a_ 277 TPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH-------HAYDVGSF 349 (405)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC-------CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCC-------CHHHHHHH
Confidence 23322 356677777777788999999999999999999999988877655 3578999999755 35678888
Q ss_pred HHhCCcEEEeeccc--------cCCeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 717 INASGRLHMVPASQ--------EQNDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 717 L~~~G~~~~s~s~~--------~g~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
|.+.|+...+++.+ ....++ ||++.++|++|||+++++|+++.++
T Consensus 350 L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 350 LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp HHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 98999887666533 224567 9999999999999999999998854
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.60 E-value=2.7e-06 Score=94.41 Aligned_cols=261 Identities=12% Similarity=0.038 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHH--hcCCC-CCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q psy852 29 SYPSVLADMLSD--AIGCI-GFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQ 105 (891)
Q Consensus 29 ~~~~~~~~~l~~--~~n~~-~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~ 105 (891)
-+|.++..+++. .++.. ....+.+...-++-.+.=.||+++.|++.-...
T Consensus 77 ~~p~~i~~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd~~n~s--------------------------- 129 (437)
T d1wyua1 77 HVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANAS--------------------------- 129 (437)
T ss_dssp CCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSC---------------------------
T ss_pred eeCHHHHHHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhCCCccccC---------------------------
Confidence 345555544432 33322 223456777777777788899999999854221
Q ss_pred CCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHH
Q psy852 106 PQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGAT 181 (891)
Q Consensus 106 ~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~ 181 (891)
-..|+ ++-+..+.+++...+. -.++++...|.+.... +...|.+++.|+.++.+..+ ++
T Consensus 130 --~~~ga--~a~~~~~~~~~~~~~~------------~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~~-~~ 192 (437)
T d1wyua1 130 --MYDGA--TALAEGVLLALRETGR------------MGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPL-PE 192 (437)
T ss_dssp --BSSHH--HHHHHHHHHHHHHHTC------------CEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCC-CC
T ss_pred --chHHH--HHHHHHHHHHHhhhcc------------cccccccccChHHhhhhhhhcccceeeEEeeecccccchh-hh
Confidence 01233 2344445555544211 1266778888765332 24578899999987654433 22
Q ss_pred HHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc---cCCccccCCCCccCCCCcccccCC
Q psy852 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY---AGSSFICPEFRPFMNGKTSFDNLH 258 (891)
Q Consensus 182 L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~---GG~~~~~~~~~~~~~g~~~~d~~~ 258 (891)
+.++ .+.|++|..|| .|.+.++++|++++++.|..+-+|+.. ||.
T Consensus 193 ----~~~~------~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l--------------------- 240 (437)
T d1wyua1 193 ----VGEE------VGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVL--------------------- 240 (437)
T ss_dssp ----CCTT------EEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTB---------------------
T ss_pred ----hccc------eeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhcc---------------------
Confidence 2233 57899999966 599999999999999998766555533 100
Q ss_pred CCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEee
Q psy852 259 LSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVD 338 (891)
Q Consensus 259 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 338 (891)
T Consensus 241 -------------------------------------------------------------------------------- 240 (437)
T d1wyua1 241 -------------------------------------------------------------------------------- 240 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccCccccccccCCCcccEEEEeCCCcCCccCCc-----eEEEEeccccchhhcccCccccCCCC---CCccc-
Q psy852 339 GAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDS-----SCLWVADRYKLTSALVVDPLYLQHGH---EGAID- 409 (891)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~-----g~~~~r~~~~~~~~~~~~~~y~~~~~---~~~~~- 409 (891)
..| |--.||-+..| ||-++.|.+. |.+.+|+... . .-|..+.... ++...
T Consensus 241 --------~~P-------g~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~--r---~lPgrivg~s~d~~G~~~~ 299 (437)
T d1wyua1 241 --------KPP-------GAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFV--R---QLPGRLVSETVDVEGRRGF 299 (437)
T ss_dssp --------CCH-------HHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGG--G---GCCSCCEEEEEBTTSCEEE
T ss_pred --------ccc-------cccccceEeec-cceeccccCCCcCccccccccchhh--c---cccccccccccccCCcccc
Confidence 000 01147888888 6656666654 8888887532 1 1122221110 01100
Q ss_pred -----ccc------ccc--CCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 410 -----YRH------WGI--PLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 410 -----~~~------~~~--~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
.+. ... -|+-.+ -++..|+.+.++|.+|++++.+.++.+|+|+.++|.+.++++++.
T Consensus 300 ~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~ 370 (437)
T d1wyua1 300 ILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFT 370 (437)
T ss_dssp EECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECS
T ss_pred eeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccC
Confidence 000 000 122222 367889999999999999999999999999999999999988774
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.59 E-value=6.7e-07 Score=97.64 Aligned_cols=272 Identities=12% Similarity=0.117 Sum_probs=164.8
Q ss_pred ccCCCCC-CHHHHHHHHHHHhcCCCC-----Cc-cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 22 AYFPSGN-SYPSVLADMLSDAIGCIG-----FS-WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 22 ~~~~~~~-~~~~~~~~~l~~~~n~~~-----~~-~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
.-.++-+ ..|.++..+-+.+.|-.. -. |.+.....++|..+.+...++||......
T Consensus 27 ~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anV----------------- 89 (405)
T d1kl1a_ 27 ELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANV----------------- 89 (405)
T ss_dssp ECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEEC-----------------
T ss_pred eEeccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCccee-----------------
Confidence 3344443 335555555555555432 22 33567889999999999999999853321
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEE-ecCCCChHHHHHHHH--cCCeEEEEec
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAY-CSKEAHSCVEKAAMM--AFVRLKILEP 171 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~-~S~~~H~Sv~kaa~~--~~~~v~~V~~ 171 (891)
- ..+|+.++.+....+ -+.+ .+++.+ .+.-.|.|-.+.... ...+.+..++
T Consensus 90 ------q-------p~SGs~An~av~~al--l~pG-----------D~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~ 143 (405)
T d1kl1a_ 90 ------Q-------PHSGAQANMAVYFTV--LEHG-----------DTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGV 143 (405)
T ss_dssp ------C-------CSSHHHHHHHHHHHH--CCTT-----------CEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECB
T ss_pred ------e-------ccCchHHHHHHHHHh--cCCC-----------CEEEEeecccccccccCccccccceEEEEEEecc
Confidence 0 135654432222222 2111 011111 223445554332211 1357777788
Q ss_pred C-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCC
Q psy852 172 D-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250 (891)
Q Consensus 172 d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g 250 (891)
| +++.||.+++++.+++.+ |-+|++ |.+..--.-|++++.+||++.|.++++|+|+ +.|
T Consensus 144 d~~~~~ID~d~l~~~a~~~k-----PklIi~--G~S~y~r~~d~~~~reIad~vga~l~~D~aH-------------~~G 203 (405)
T d1kl1a_ 144 DPETHVIDYDDVREKARLHR-----PKLIVA--AASAYPRIIDFAKFREIADEVGAYLMVDMAH-------------IAG 203 (405)
T ss_dssp CTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHHHHHHHTCEEEEECTT-------------THH
T ss_pred chhcccccHHHHHHHHHhhC-----cceEEe--cccccccccChHHHHHHHhhhCCEEecchhh-------------Hhh
Confidence 8 567899999999998764 655543 4455566667999999999999999999998 001
Q ss_pred CcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccc
Q psy852 251 KTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAI 330 (891)
Q Consensus 251 ~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (891)
+
T Consensus 204 L------------------------------------------------------------------------------- 204 (405)
T d1kl1a_ 204 L------------------------------------------------------------------------------- 204 (405)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccc
Q psy852 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDY 410 (891)
Q Consensus 331 ~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~ 410 (891)
-+++.+-+| +++||.+|.+.||.+.+|-+ |++++++... ......-
T Consensus 205 ----------Ia~g~~~~P--------~~~aDvvt~tThKtlrGPrg-g~I~~~~~~~-~~i~~av-------------- 250 (405)
T d1kl1a_ 205 ----------VAAGLHPNP--------VPYAHFVTTTTHKTLRGPRG-GMILCQEQFA-KQIDKAI-------------- 250 (405)
T ss_dssp ----------HHTTSSCCS--------TTTCSEEEEESSSTTCCCSC-EEEEECHHHH-HHHHHHH--------------
T ss_pred ----------hhhhhcCCh--------hhhhhheeccccccccCCCC-ceEEecchhH-HHHHhhh--------------
Confidence 011111112 34689999999999999976 7777775421 1110000
Q ss_pred cccccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchh
Q psy852 411 RHWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASEC 475 (891)
Q Consensus 411 ~~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsea 475 (891)
-.+++++-... ..++-.+++..-...+.+++++.+++|+.|++.|.+ .||.|+. |+|+.
T Consensus 251 -fPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~-~G~~vv~----ggTd~ 310 (405)
T d1kl1a_ 251 -FPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN-EGFTLVS----GGTDN 310 (405)
T ss_dssp -TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGG----GSCSS
T ss_pred -CcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-CCceeec----CCCcc
Confidence 11233343433 334455566655678899999999999999999987 6888873 55544
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=1.5e-07 Score=101.78 Aligned_cols=282 Identities=12% Similarity=0.085 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccc
Q psy852 437 GLQKYIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEA 515 (891)
Q Consensus 437 G~~~ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~a 515 (891)
.+.......++.+| .+++.++..++ +|+ +++|+|+++..++........ .++-+++++...
T Consensus 37 ~~~~~~~~~~~~aR~~ia~l~~~~~~-~i~--~~~~~T~~l~~~~~~~~~~~~---------------~~g~~v~~~~~~ 98 (376)
T d1eg5a_ 37 GMGIEANLHMEKAREKVAKVLGVSPS-EIF--FTSCATESINWILKTVAETFE---------------KRKRTIITTPIE 98 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGG-GEE--EESCHHHHHHHHHHHHHHHTT---------------TTCCEEEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC-cEE--EECCHHHHHHhhhhccccccc---------------ccCccccccccc
Confidence 44556666677776 77888888776 677 778999998877665433221 123357777777
Q ss_pred hHHHHHHHH---HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh-------
Q psy852 516 HSCVEKAAM---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR------- 574 (891)
Q Consensus 516 H~Sv~Kaa~---l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~------- 574 (891)
|++..-.+. -.|++++.||++++|++|+++++++|+++++ .+++. ...|+.. |..
T Consensus 99 ~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~----lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~ 174 (376)
T d1eg5a_ 99 HKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTF----LVSIMAANNEVGTIQPVEDVTRIVKKKNKETLV 174 (376)
T ss_dssp CHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEE----EEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEE
T ss_pred chhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCCCce----EEEEECCccccceeeeehhhhhhhhhcccCcee
Confidence 777766654 3589999999999999999999999987543 22222 3345433 111
Q ss_pred hhcCC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc
Q psy852 575 KSQGI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 575 ~ldGi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
.+|+. -.+|.+++++|||+ +|.|+|++++++...+.+. +...+....+ ..+....
T Consensus 175 ~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~-gp~G~~~l~~~~~~~~~p~------~~g~~~~~~~------~~~~~~~ 241 (376)
T d1eg5a_ 175 HVDAVQTIGKIPFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGVPIRPL------IHGGGQERGL------RSGTQNV 241 (376)
T ss_dssp EEECTTTTTTSCCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTSCCCCS------BCSSCTTTTT------BCSCCCH
T ss_pred EEEeeeccccccccccccCccceecccceee-cCCCceeEEeccCcccCCc------ccCCCCcccc------cCCcccc
Confidence 13332 24799999999995 6999999999877544321 1111000000 0111112
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC--CCceeEEEEEecCCcchhhhhhHHHHHHHHHhC
Q psy852 643 RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN--DVRLGLVCFRLRSENNLIADQNNRKLLEDINAS 720 (891)
Q Consensus 643 ~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~--~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~ 720 (891)
.+........................+.+++.+.|+......+.. .....++.|.+.+. ....+...|.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~~~ 314 (376)
T d1eg5a_ 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI-------RGSTLQNLLSGY 314 (376)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHHHT
T ss_pred hhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCCC-------CHHHHHHHHhhC
Confidence 222222222233344555666677778888999988765444432 23457889998754 457778888889
Q ss_pred CcEEEeecccc-------------C------CeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 721 GRLHMVPASQE-------------Q------NDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 721 G~~~~s~s~~~-------------g------~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
|+.+.++..+. + ...+ ||++.+||++|||+++++|++++.
T Consensus 315 gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 315 GIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp TEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 98755443221 1 1357 999999999999999999999985
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=98.56 E-value=2.3e-06 Score=95.19 Aligned_cols=279 Identities=11% Similarity=0.012 Sum_probs=147.5
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+.. + .++ ++++|++||..++.+++....+... .+..++.+...|.+........|
T Consensus 80 le~~~a~l~g~-~--~~~--~~~sGt~A~~~a~~~~~~~g~~~~~------------~~~~~i~~~~h~~t~~~~~~~~g 142 (465)
T d1ax4a_ 80 LKDKAKELFNY-D--YII--PAHQGRGAENILFPVLLKYKQKEGK------------AKNPVFISNFHFDTTAAHVELNG 142 (465)
T ss_dssp HHHHHHHHHCC-C--EEE--EESSHHHHHHHHHHHHHHHHHHTTC------------CSSCEEEESSCCHHHHHHHHHTT
T ss_pred HHHHHHHHHCC-C--EEE--ECCCcHHHHHHHHHHHHHHHHhcCC------------CCCeEEeccchhhhhHHHHHHcC
Confidence 34455555543 2 233 5678999999999999876543221 22334444444455554455666
Q ss_pred ceEEEecC----------CCCCCcCHHHHHHHHHhhhhcCCccEEEEe----cCCccc------------hhh-----hh
Q psy852 528 VRLKILEP----------DDKNSLRGATLRQVMQQDETMGYIPFFVST----TLGTTS------------CYR-----KS 576 (891)
Q Consensus 528 v~v~~Vp~----------d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva----taGTT~------------c~~-----~l 576 (891)
...+.++. +..|.+|+++|+++|++.... .++.+++. +.|... |.+ ++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~ 221 (465)
T d1ax4a_ 143 CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD-NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVM 221 (465)
T ss_dssp CEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG-GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccc-cccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEE
Confidence 66554422 356899999999999875432 22333322 122221 443 24
Q ss_pred cCC-----------------------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCC
Q psy852 577 QGI-----------------------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHE 626 (891)
Q Consensus 577 dGi-----------------------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e 626 (891)
|++ ..+|.++++.||.+++|.+ |+++.++...+...... ...+...
T Consensus 222 D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~-g~l~~~~~~~~~~~~~~~~~~~~~~--- 297 (465)
T d1ax4a_ 222 DSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPMEGF--- 297 (465)
T ss_dssp ECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHHTCS---
T ss_pred ECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccc-eeEeecchHHHHHhhhccccccccC---
Confidence 443 2379999999999887765 88888876433221110 0000000
Q ss_pred CCccccCCcccccccccchHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcc--
Q psy852 627 GAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENN-- 703 (891)
Q Consensus 627 ~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~-- 703 (891)
.... .-+...+..+.....+. ....+++..+++++|.+.|++. ++.++.++....+.+.......
T Consensus 298 -----~~~~------~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~ 365 (465)
T d1ax4a_ 298 -----VTYG------GLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDCKKLVPQI 365 (465)
T ss_dssp -----TTTT------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEESTTTCTTS
T ss_pred -----CCcc------hhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh-cCccccCCCcceeeeehhhhcCCC
Confidence 0000 00111112222222222 2345566677889999999885 5666666555555444322110
Q ss_pred hhhhhhHHH-HHHHHHhCCcEEEeecc-------------ccCCeEE-EEecC-CCCHHHHHHHHHHHHHHHH
Q psy852 704 LIADQNNRK-LLEDINASGRLHMVPAS-------------QEQNDEV-FELQE-RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 704 ~~~d~ln~~-L~~~L~~~G~~~~s~s~-------------~~g~~~l-~sv~~-~tT~edId~li~~L~ei~~ 760 (891)
......... +...+.+.|+....... ......+ +++.. ..|+||||+++++|+++..
T Consensus 366 ~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~ 438 (465)
T d1ax4a_ 366 PGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE 438 (465)
T ss_dssp CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred ccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 111111222 33444566764221110 0112345 76543 3499999999999998763
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=98.55 E-value=8.1e-07 Score=99.00 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=85.8
Q ss_pred ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhc
Q psy852 48 SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQ 127 (891)
Q Consensus 48 ~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~ 127 (891)
.|..+|...++|.. +++++|.+..+ ++++|+.+ |...+.+++..
T Consensus 70 ~y~~~~~~~~le~~----~a~l~g~~~~~-------------------------------~~~sGt~A-~~~a~~~~~~~ 113 (465)
T d1ax4a_ 70 AYAGSRNYYDLKDK----AKELFNYDYII-------------------------------PAHQGRGA-ENILFPVLLKY 113 (465)
T ss_dssp CSSSCHHHHHHHHH----HHHHHCCCEEE-------------------------------EESSHHHH-HHHHHHHHHHH
T ss_pred hhccChHHHHHHHH----HHHHHCCCEEE-------------------------------ECCCcHHH-HHHHHHHHHHH
Confidence 35567888888865 56778876431 35688754 44444444432
Q ss_pred cccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec----------CCCCcccHHHHHHHHHhhhhcCCcce
Q psy852 128 KKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP----------DDKNSLRGATLRQVMQQDETMGYIPF 197 (891)
Q Consensus 128 ~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~----------d~~g~id~~~L~~~l~~~~~~g~~p~ 197 (891)
... .+ ..+..++.+...|.+.......++...+.+.+ +..|.+|+++|+++|++... ..+.
T Consensus 114 g~~-----~~--~~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~ 184 (465)
T d1ax4a_ 114 KQK-----EG--KAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA--DNIV 184 (465)
T ss_dssp HHH-----TT--CCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG--GGEE
T ss_pred HHh-----cC--CCCCeEEeccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhcc--cccc
Confidence 100 00 11122334444444544444566655554432 35789999999999987532 2234
Q ss_pred EEEeecccCcccc----ccCHHHHHHHHHHcCCceeeeccc
Q psy852 198 FVSTTLGTTSCCS----FDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 198 ~V~~t~Gtt~~Ga----vDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+++.+..++..|. .+++.+|.++|++||+++|+|+|+
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~ 225 (465)
T d1ax4a_ 185 AIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSAR 225 (465)
T ss_dssp EEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcc
Confidence 5555554444433 367889999999999999999998
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=3.9e-06 Score=93.53 Aligned_cols=281 Identities=7% Similarity=-0.033 Sum_probs=148.8
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCc
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV 528 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv 528 (891)
.+.+++.+... . ++ ++++|++||.+++.+++........ ....-.+..+...|....-++.+.|.
T Consensus 80 e~~~a~l~G~~-~--~~--~~~sGt~A~~~a~~~~~~~g~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~G~ 144 (467)
T d2v1pa1 80 AESVKNIFGYQ-Y--TI--PTHQGRGAEQIYIPVLIKKREQEKG----------LDRSKMVAFSNYFFDTTQGHSQINGC 144 (467)
T ss_dssp HHHHHHHTCCS-E--EE--EECSSTTTHHHHHHHHHHHHHHHHC----------CCTTTCEEEESSCCHHHHHHHHHTTC
T ss_pred HHHHHHHHCCC-E--EE--ECCCCHHHHHHHHHHHhhccceEec----------CCCCcEEEEecccccccHHHHHHcCC
Confidence 34555555432 1 22 4678899999999998876543321 11112255566667777667778898
Q ss_pred eEEEecCCC----------CCCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc------------hhh-----hhcC
Q psy852 529 RLKILEPDD----------KNSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS------------CYR-----KSQG 578 (891)
Q Consensus 529 ~v~~Vp~d~----------~G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~------------c~~-----~ldG 578 (891)
.++.++.+. .+.+|+++|++.+++........+++-.+ .|... |++ ++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~ 224 (467)
T d2v1pa1 145 TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDS 224 (467)
T ss_dssp EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 888887653 47899999999998764433223333332 23222 433 3444
Q ss_pred C-----------------------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CC-CccccCCCC
Q psy852 579 I-----------------------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DP-LYLQHGHEG 627 (891)
Q Consensus 579 i-----------------------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~-~Yl~~~~e~ 627 (891)
+ ..+|+++++.||.+++|.| |++..++.. +...... .. .....
T Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~-~~~~~~~~~~~~~~~~---- 298 (467)
T d2v1pa1 225 ARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDS-FFDVYTECRTLCVVQE---- 298 (467)
T ss_dssp TTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGG-GHHHHHHHHHHHHHTT----
T ss_pred hhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchh-hhhHHHhhcccccccc----
Confidence 3 3589999999999998865 444454442 2211110 00 00000
Q ss_pred CccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecC--Ccchh
Q psy852 628 AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRS--ENNLI 705 (891)
Q Consensus 628 ~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~--~~~~~ 705 (891)
.... .-......+++....+......+.+++..+++++|.++|++... .+.. +..+.+...... .....
T Consensus 299 -----~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~v~~-~~~~~~~~~~~~~~~~~~~ 369 (467)
T d2v1pa1 299 -----GFPT--YGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGV-VCQQ-AGGHAAFVDAGKLLPHIPA 369 (467)
T ss_dssp -----SSCC--CCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC-CEEE-ECSSCEEEEHHHHSTTSCG
T ss_pred -----cCcc--hhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCC-cccC-CCccceeecchhhcCCcch
Confidence 0000 00011122233333334444456777888899999999988533 3322 122222111110 00001
Q ss_pred hhhhHHHHH-HHHHhCCcEEEeec-------------cccCCeEE-EEecC-CCCHHHHHHHHHHHHHHH
Q psy852 706 ADQNNRKLL-EDINASGRLHMVPA-------------SQEQNDEV-FELQE-RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 706 ~d~ln~~L~-~~L~~~G~~~~s~s-------------~~~g~~~l-~sv~~-~tT~edId~li~~L~ei~ 759 (891)
.+.....+. ..+.+.|+.-+... .......+ +++.. ..|+||||+++++|+++.
T Consensus 370 ~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~ 439 (467)
T d2v1pa1 370 DQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVK 439 (467)
T ss_dssp GGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 111222233 33456676422111 01123345 76543 459999999999999886
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=98.44 E-value=1e-06 Score=89.84 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=99.7
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIE 97 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~ 97 (891)
|.+|.+=++....|.++..|....... ...+ + ..++..++.+.+++++|.+... .
T Consensus 1 ~~~f~nd~~~g~~P~v~eAl~~~~~~~-~~~y--~--~~~~~~~lr~~ia~~~g~~~~~--------v------------ 55 (340)
T d1svva_ 1 PYSFVNDYSVGMHPKILDLMARDNMTQ-HAGY--G--QDSHCAKAARLIGELLERPDAD--------V------------ 55 (340)
T ss_dssp CEECSCSCSSCCCHHHHHHHHHHTTCC-CCST--T--CSHHHHHHHHHHHHHHTCTTSE--------E------------
T ss_pred CCCcccCCCCCCCHHHHHHHHHHhhcC-CCCC--C--CCHHHHHHHHHHHHHhCCCcce--------E------------
Confidence 444533333344688887766543221 1112 1 2355567888999999987642 1
Q ss_pred ccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH--HcCCeEEEEecCCCC
Q psy852 98 DYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM--MAFVRLKILEPDDKN 175 (891)
Q Consensus 98 ~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~--~~~~~v~~V~~d~~g 175 (891)
.+|+|||+++++.+..+ .. +...+......|++...... ..+.....+. ...+
T Consensus 56 ---------~~tsggtean~~a~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 110 (340)
T d1svva_ 56 ---------HFISGGTQTNLIACSLA-LR--------------PWEAVIATQLGHISTHETGAIEATGHKVVTAP-CPDG 110 (340)
T ss_dssp ---------EEESCHHHHHHHHHHHH-CC--------------TTEEEEEETTSHHHHSSTTHHHHTTCCEEEEC-CTTS
T ss_pred ---------EEcCCHHHHHHHHHHHH-hh--------------hccccccccccceeeeecccccccceeeeecc-cccc
Confidence 25689987655433322 11 12235566777877755442 2333333333 3344
Q ss_pred cccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 176 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 176 ~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
..+.+...+...........+..++....++..|.+ |++..+.++|+++|.++|+|.++++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~ 176 (340)
T d1svva_ 111 KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASA 176 (340)
T ss_dssp CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHH
T ss_pred cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeee
Confidence 556666666666555555555555555555666665 456677889999999999999996544
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=98.44 E-value=2.4e-06 Score=91.47 Aligned_cols=273 Identities=12% Similarity=0.021 Sum_probs=144.1
Q ss_pred HHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchH--HHHH
Q psy852 445 HCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHS--CVEK 521 (891)
Q Consensus 445 ~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~--Sv~K 521 (891)
.++-++ .+++.+..-++.+++ +++|++++++.+... ..... .+.++.+. ..++ .+.+
T Consensus 49 ~~~~~r~~l~~l~~~~~~~~i~--~~~gs~t~~~ea~~~---~l~~~--------------~~~~l~~~-~g~~~~~~~~ 108 (361)
T d2c0ra1 49 VHNEAQARLLALLGNPTGYKVL--FIQGGASTQFAMIPM---NFLKE--------------GQTANYVM-TGSWASKALK 108 (361)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEE--EESSHHHHHHHHHHH---HHCCT--------------TCEEEEEE-CSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEE--EECCCchHHHHHHHh---ccccC--------------CCceEEEe-echhhhhhhh
Confidence 333343 555555655667777 566666665544322 11110 11222232 2222 2233
Q ss_pred HHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhh-----hhcCC---------
Q psy852 522 AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYR-----KSQGI--------- 579 (891)
Q Consensus 522 aa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~-----~ldGi--------- 579 (891)
.+...+..+..++.+.....+++.+++.+..+ ...++.++.|++. |.+ .+|++
T Consensus 109 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id 183 (361)
T d2c0ra1 109 EAKLIGDTHVAASSEASNYMTLPKLQEIQLQD-----NAAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFD 183 (361)
T ss_dssp HHHHHSCEEEEEECGGGTTCSCCCGGGCCCCT-----TEEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCC
T ss_pred hhhhcCceeeeeccccccccchhhhhhhcccC-----cceEEEEecccceecceEEEeeccCCceEEEEeeccccccccc
Confidence 34456788888888888889988887766543 3566777777776 332 24543
Q ss_pred -CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccc----ccc-chHH-HHHHH
Q psy852 580 -EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR----RFR-SLKL-WFVIR 652 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SR----r~~-aL~l-W~~L~ 652 (891)
+..|-..++.||.++.|-+ +++++..+..... ......+. ++..+.....+ ... ...+ -....
T Consensus 184 ~~~~di~~~s~~k~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (361)
T d2c0ra1 184 LNQFGLVYAGAQKNLGPSGV-TVVIVREDLVAES-PKHLPTML--------RYDTYVKNNSLYNTPPSFGIYMVNEVLKW 253 (361)
T ss_dssp GGGCSEEEEETTTTTCCSSC-EEEEEEGGGSSSC-CTTSCGGG--------CHHHHHHTTTCSSCCCHHHHHHHHHHHHH
T ss_pred cccceeEEEecccccccccC-cEEEEEhHHhhhC-cccccccc--------ccccccccccccccccceeeehhhhHHHh
Confidence 3346667788998885554 4444444321111 00000000 00000000000 000 0111 11111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCCCcE-EeCCC--c-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 653 TYGLSGLQKYIRRHCELAKLFEGKVRRDPRFE-ISNDV--R-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 653 ~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~e-il~~~--~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
.....+.....++....++.+........... ....+ . ..+++|++.+ +...+.+.+.|.+.|+....+-
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~------~~~~~~~~~~L~~~GI~~~~G~ 327 (361)
T d2c0ra1 254 IEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS------EELEKEFVKASEQEGFVGLKGH 327 (361)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC------HHHHHHHHHHHHHTTEESCBCC
T ss_pred hhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCC------cccHHHHHHHHHHCCCEEecCC
Confidence 22333444455555555555555555543333 23222 2 3689999963 3356788899999998754543
Q ss_pred cccCCeEEEEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 SQEQNDEVFELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 ~~~g~~~l~sv~~~tT~edId~li~~L~ei~ 759 (891)
..-+ .+.|++.+++|.|||++++++|++..
T Consensus 328 ~~~g-~~RIs~~~~~~~edv~~Lv~~l~~~~ 357 (361)
T d2c0ra1 328 RSVG-GLRASIYNAVPYESCEALVQFMEHFK 357 (361)
T ss_dssp TTTC-SEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcCC-eEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 2222 23399999999999999999999765
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=98.43 E-value=3.9e-06 Score=91.48 Aligned_cols=140 Identities=10% Similarity=0.044 Sum_probs=100.5
Q ss_pred HHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHH
Q psy852 37 MLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQS 116 (891)
Q Consensus 37 ~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~ 116 (891)
.+...++........+|.+.++|+ .+|+++|-+.. ..++.||.+
T Consensus 18 ~~~~~l~~g~~~~~~g~~v~~fE~----~~a~~~g~~~~-------------------------------v~~~SGt~A- 61 (384)
T d1b9ha_ 18 GLVRALEQGQWWRMGGDEVNSFER----EFAAHHGAAHA-------------------------------LAVTNGTHA- 61 (384)
T ss_dssp HHHHHHHTSCCBTTTCSHHHHHHH----HHHHHTTCSEE-------------------------------EEESCHHHH-
T ss_pred HHHHHHHcCCeeecCCHHHHHHHH----HHHHHHCcCeE-------------------------------EEeCCHHHH-
Confidence 344455554434456899999996 66777777643 134677633
Q ss_pred HHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCc
Q psy852 117 VQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYI 195 (891)
Q Consensus 117 ~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~ 195 (891)
.. ++..+-.. .+.-.|+++..++.++..++...|.+.+.+++++ ++.||++.+++.+.+.++
T Consensus 62 l~-lal~~l~~------------~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk---- 124 (384)
T d1b9ha_ 62 LE-LALQVMGV------------GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTK---- 124 (384)
T ss_dssp HH-HHHHHTTC------------CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEE----
T ss_pred HH-HHHHHcCC------------CCCCEEEEeccccccccccccccccccccccccccccccchhhhccccccccc----
Confidence 21 11112111 1122488999999999999988888999999885 688999999998876642
Q ss_pred ceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 196 PFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 196 p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.| ..++..|..-++.+|.++|+++++++..|+|+
T Consensus 125 --~i---~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~ 158 (384)
T d1b9ha_ 125 --VI---MPVHMAGLMADMDALAKISADTGVPLLQDAAH 158 (384)
T ss_dssp --EE---CCBCGGGCCCCHHHHHHHHHHHTCCBCEECTT
T ss_pred --cc---ccccccccccccccchhhhhhhhhhhhhhhce
Confidence 33 34677888999999999999999999999998
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.42 E-value=1.9e-06 Score=92.68 Aligned_cols=280 Identities=10% Similarity=0.012 Sum_probs=160.8
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCc
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV 528 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv 528 (891)
-+.+++.+... . .+ .+++||.|+..++.+.. ..+.-.|+++...|.+...+....|.
T Consensus 37 E~~la~~~g~~-~--ai--~~~sgt~Al~~al~al~------------------~~~gdeVi~~~~~~~~~~~ai~~~g~ 93 (376)
T d1mdoa_ 37 EAAFCRLTGNQ-Y--AV--AVSSATAGMHIALMALG------------------IGEGDEVITPSMTWVSTLNMIVLLGA 93 (376)
T ss_dssp HHHHHHHHCCS-E--EE--EESCHHHHHHHHHHHTT------------------CCTTCEEEEESSSCHHHHHHHHHTTC
T ss_pred HHHHHHHHCcC-e--EE--EeCCHHHHHHHHHHHhC------------------CCCCCEEEEecccccccccchhcccc
Confidence 35666666542 1 22 45678999998886631 11223699999999999999999999
Q ss_pred eEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hc--------------CCC
Q psy852 529 RLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQ--------------GIE 580 (891)
Q Consensus 529 ~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ld--------------Gi~ 580 (891)
..+.++++.+ +.||+++|+++|.+.++ .++++...|... |.++ .| |.-
T Consensus 94 ~pv~~d~~~~~~~~d~~~l~~~i~~~tk----aIi~~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~ 169 (376)
T d1mdoa_ 94 NPVMVDVDRDTLMVTPEHIEAAITPQTK----AIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGAR 169 (376)
T ss_dssp EEEEECBCTTTCCBCHHHHHHHCCTTEE----EECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSS
T ss_pred ceeeecccccccCCCHHHHHHhcCCCCe----EEEEeCCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccc
Confidence 9999999865 78999999999987532 233334456543 4331 11 223
Q ss_pred CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCC-CC--CccccCCcc-cccccccchHHHHHHHHHHH
Q psy852 581 YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH-EG--AIDYRHWGI-PLSRRFRSLKLWFVIRTYGL 656 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~-e~--~~~~~~~ti-~~SRr~~aL~lW~~L~~lG~ 656 (891)
....+||.++|++.++-| |++++.+.......-.....+..... .. ......+.. ..+..++.-.+=+++-....
T Consensus 170 g~~~~Sf~~~K~l~~g~G-G~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL 248 (376)
T d1mdoa_ 170 GTAIFSFHAIKNITCAEG-GIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL 248 (376)
T ss_dssp SEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH
T ss_pred cCccccCCCcCCCCCCCC-CEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhh
Confidence 356778889999986554 77777766543322111111110000 00 000000000 01111221122223334445
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCce-----eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE---eec
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRL-----GLVCFRLRSENNLIADQNNRKLLEDINASGRLHM---VPA 728 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~-----~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~---s~s 728 (891)
..+.+.+++..++++++.+.|++++...+...... ....+.+.. ......-.++.+.|.+.|+-.. .+.
T Consensus 249 ~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Rd~l~~~L~~~gI~~~~~y~~~ 325 (376)
T d1mdoa_ 249 QKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDE---ARCGITRDALMASLKTKGIGTGLHFRAA 325 (376)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCH---HHHSSCHHHHHHHHHHTTBCCBCCCCCG
T ss_pred hhhhHHHHHHhhhhhhhhhhccccccccccccccccccccccccccccc---ccchhhHHHHHHHHHHCCCCeeeECcch
Confidence 67788889999999999999999877665433221 122222211 0001112468889999887421 111
Q ss_pred c--------cc-C---------CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 S--------QE-Q---------NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 ~--------~~-g---------~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
. .. + ..++ +-+++..|++||++++++|++++
T Consensus 326 ~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 326 HTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp GGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0 00 0 1234 54677899999999999999875
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=98.41 E-value=9.3e-07 Score=95.41 Aligned_cols=146 Identities=11% Similarity=0.122 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccch
Q psy852 438 LQKYIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH 516 (891)
Q Consensus 438 ~~~ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH 516 (891)
......+.++.++ .+++.++..++ +|+ +++|+|+++..++.+.+. .+...|+++..+|
T Consensus 44 ~~~~~~~~~~~~r~~la~~~~~~~~-~i~--~~~g~t~a~~~~~~~l~~------------------~~g~~i~~~~~~~ 102 (381)
T d1elua_ 44 ANQHIQQLIAQLRQALAETFNVDPN-TIT--ITDNVTTGCDIVLWGLDW------------------HQGDEILLTDCEH 102 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGG-GEE--EESSHHHHHHHHHHHSCC------------------CTTCEEEEETTCC
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcc-cEE--EECChHHHhhhcchhhhh------------------cCCceEEEecccc
Confidence 3445556666665 67788876555 777 788999998877655311 1234578889999
Q ss_pred HHHHHHHH----HcCceEEEecCCCCCCcC--HHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh-----
Q psy852 517 SCVEKAAM----MAFVRLKILEPDDKNSLR--GATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR----- 574 (891)
Q Consensus 517 ~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD--~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~----- 574 (891)
+++..++. ..|++++.+|.+.+...+ .+.|++++++.+ ..+++.. ..|+.. |++
T Consensus 103 ~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t----~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~ 178 (381)
T d1elua_ 103 PGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKT----RLVILSHLLWNTGQVLPLAEIMAVCRRHQGNY 178 (381)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTE----EEEEEESBCTTTCCBCCHHHHHHHHHHCCSSS
T ss_pred ceeeeccccccccccccccccccccccccchHHHHHHhhhcccc----cccccccccccccccchhhHHHHHHhhccccc
Confidence 98877653 368899999987655543 455555555432 2333332 245544 443
Q ss_pred ----hhcCC------------CCccEEEEcCcccCCcccccEEEEEeCCc
Q psy852 575 ----KSQGI------------EYADSFNVNVNKWLLTAFDSSCLWVADRY 608 (891)
Q Consensus 575 ----~ldGi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~ 608 (891)
++|+. -.+|++++++|||+++|.|+|++++|+..
T Consensus 179 ~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~ 228 (381)
T d1elua_ 179 PVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDC 228 (381)
T ss_dssp CCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhHHHhhHHH
Confidence 24443 25899999999999999999999998773
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.40 E-value=4.4e-06 Score=92.75 Aligned_cols=282 Identities=15% Similarity=0.117 Sum_probs=167.6
Q ss_pred cccCCCCC-CHHHHHHHHHHHhcCCCC-----Ccc-ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 21 HAYFPSGN-SYPSVLADMLSDAIGCIG-----FSW-AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~l~~~~n~~~-----~~~-~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
+.-.++-+ ..|.+...+.+.+-|-.. ..| .+.-...++|..+.+...++||.+.+..+
T Consensus 34 l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~--------------- 98 (470)
T d1rv3a_ 34 LELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWG--------------- 98 (470)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEE---------------
T ss_pred ceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhcc---------------
Confidence 33344444 345555555555555442 333 35678899999999999999999854211
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEE-ecCCCChHHHHH-------HHHcCCe
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAY-CSKEAHSCVEKA-------AMMAFVR 165 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~-~S~~~H~Sv~ka-------a~~~~~~ 165 (891)
.| +- ..+|+..+.+....+ -..+ .+++.+ .+.-.|.|--.. ..-...+
T Consensus 99 an----Vq-------p~SGs~An~av~~al--l~pg-----------D~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~ 154 (470)
T d1rv3a_ 99 VN----VQ-------PYSGSPANFAVYTAL--VEPH-----------GRIMGLDLPDGGHLTHGFMTDKKKISATSIFFE 154 (470)
T ss_dssp EE----CC-------CSSHHHHHHHHHHHH--TCTT-----------CEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSE
T ss_pred cc----cc-------ccCCccHHHHHHHHh--cCCC-----------CeEeeeccccCCcccccccccCCCcccccceeE
Confidence 01 11 135654433333332 2111 011111 123345443210 0001247
Q ss_pred EEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCC
Q psy852 166 LKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEF 244 (891)
Q Consensus 166 v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~ 244 (891)
....++|.+ |.||.+++++..++.+ |-+|+ +|.+..--.-|++++.+||++.|.++++|+|+
T Consensus 155 ~~~y~v~~~~~~IDyd~l~~~a~~~k-----PklIi--~G~S~y~r~~d~~~~reIad~vga~l~~D~aH---------- 217 (470)
T d1rv3a_ 155 SMAYKVNPDTGYIDYDRLEENARLFH-----PKLII--AGTSCYSRNLDYGRLRKIADENGAYLMADMAH---------- 217 (470)
T ss_dssp EEEECBCTTTCSBCHHHHHHHHHHHC-----CSEEE--ECCSSCCSCCCHHHHHHHHHHTTCEEEEECTT----------
T ss_pred eeEEEEecccCcccHHHHHHHHHhhC-----cceEe--echhhccccCCHHHHHHHHhccCCeEEecchh----------
Confidence 778888865 9999999999888764 65654 35566667789999999999999999999998
Q ss_pred CccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccc
Q psy852 245 RPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQ 324 (891)
Q Consensus 245 ~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (891)
+.|+
T Consensus 218 ---~aGL------------------------------------------------------------------------- 221 (470)
T d1rv3a_ 218 ---ISGL------------------------------------------------------------------------- 221 (470)
T ss_dssp ---THHH-------------------------------------------------------------------------
T ss_pred ---hhhh-------------------------------------------------------------------------
Confidence 0010
Q ss_pred cccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCC--
Q psy852 325 SYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQH-- 402 (891)
Q Consensus 325 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~-- 402 (891)
.+++.+-+| ++++|.+|.+.||.+-+|-+ |++++++..+-. ++.+-..
T Consensus 222 ----------------IA~g~~~sP--------l~~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~-----~~~~~~~~~ 271 (470)
T d1rv3a_ 222 ----------------VVAGVVPSP--------FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSV-----DPKTGKEIL 271 (470)
T ss_dssp ----------------HHHTSSCCG--------GGTCSEEEEESSGGGCCCSC-EEEEEECSBCC------------CCB
T ss_pred ----------------ccccccCCh--------hheeeeeeeehhhhccCCcc-eEEEEccccccc-----cccccchhH
Confidence 011111122 24689999999999999987 888888753211 1110000
Q ss_pred -CCCCcccccc-cccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q psy852 403 -GHEGAIDYRH-WGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 403 -~~~~~~~~~~-~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv 465 (891)
.....++..- .+++++-... ..++-.+++..-..-+.+..++.+++|+.|++.|.+ .++.|+
T Consensus 272 ~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~-~G~~v~ 336 (470)
T d1rv3a_ 272 YNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE-LGYKIV 336 (470)
T ss_dssp CCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEG
T ss_pred HHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHh-CCceec
Confidence 0001111111 2345555544 344556677766667899999999999999999987 478876
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=98.40 E-value=3.6e-07 Score=100.48 Aligned_cols=293 Identities=11% Similarity=0.072 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccch
Q psy852 438 LQKYIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH 516 (891)
Q Consensus 438 ~~~ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH 516 (891)
++...+..++.+| .+++.|+..+.-+++ +++++++++...+........ .+.-.|+++..+|
T Consensus 60 ~~~~~~~~~e~aR~~ia~llga~~~~~i~--~~~~tt~~~n~~~~~~~~~~~---------------~~g~~il~s~~e~ 122 (408)
T d1t3ia_ 60 LSVRATDAYEAVRNKVAKFINARSPREIV--YTRNATEAINLVAYSWGMNNL---------------KAGDEIITTVMEH 122 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCGGGEE--EESSHHHHHHHHHHHTHHHHC---------------CTTCEEEEETTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccEE--eecchHHHHHHHHhhcccccc---------------CCCCEEEeecccc
Confidence 4556667777776 777778775433455 567778887766555333211 1234699999999
Q ss_pred HHHHHHHH----HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcC
Q psy852 517 SCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQG 578 (891)
Q Consensus 517 ~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldG 578 (891)
.++.-+++ -.|..++.+|.+.++..+.+.|+++++++++ .+ ...+....|+.. |++ ++||
T Consensus 123 ~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~~~t~--lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa 200 (408)
T d1t3ia_ 123 HSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTK--LVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDA 200 (408)
T ss_dssp GGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEE--EEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEEC
T ss_pred hhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccCCCce--EEEEecccccccccCcHHHHhhhhhccCceeeecc
Confidence 98776653 3588999999999999999999999877543 11 111223445554 333 4665
Q ss_pred CC------------CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCC------Ccc--ccCCccc-
Q psy852 579 IE------------YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG------AID--YRHWGIP- 637 (891)
Q Consensus 579 i~------------~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~------~~~--~~~~ti~- 637 (891)
.+ .+|.+++++|||+ +|.|+|+++++++.... .+.+...+... .+. .....++
T Consensus 201 ~q~~g~~~id~~~~~~D~~~~s~hK~~-gp~G~g~l~v~~~~~~~-----~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~ 274 (408)
T d1t3ia_ 201 CQSAPHYPLDVQLIDCDWLVASGHKMC-APTGIGFLYGKEEILEA-----MPPFFGGGEMIAEVFFDHFTTGELPHKFEA 274 (408)
T ss_dssp TTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHH-----SCCCSCSTTSEEEECSSCEEECCTTGGGCC
T ss_pred ceecccccccccccCCceEEecccccc-CCCCccccccchhhhhc-----CCceecCCcccccccccccccCCchhhhcC
Confidence 32 4799999999995 69999999999773211 11222111100 000 0001111
Q ss_pred cccccc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----ceeEEEEEecCCcchhhhhhHH
Q psy852 638 LSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----RLGLVCFRLRSENNLIADQNNR 711 (891)
Q Consensus 638 ~SRr~~-aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----~~~iV~Fr~~~~~~~~~d~ln~ 711 (891)
++..+. .+.+-.+++.+-..|++++.++...+++++.+.++..+++.++.+. ..++|+|.+++. ..+
T Consensus 275 Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~-------~~~ 347 (408)
T d1t3ia_ 275 GTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL-------HAS 347 (408)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB-------CHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCC-------CHH
Confidence 222222 2345566777777788888889999999999999999999988643 357999999765 456
Q ss_pred HHHHHHHhCCcEEEeeccc--------cCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 712 KLLEDINASGRLHMVPASQ--------EQNDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 712 ~L~~~L~~~G~~~~s~s~~--------~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
.+...|.+.|++..+++.+ +...++ ||++.++|++|||+++++|+++++.|
T Consensus 348 ~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 348 DVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp HHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7888898999875555432 334567 99999999999999999999998765
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=6.8e-05 Score=83.78 Aligned_cols=201 Identities=20% Similarity=0.180 Sum_probs=129.4
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.+++.+...|..........+..++.++.+..+..|.+.++..+..+. ..++++.-++.-+..+++.+++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------a~v~v~~p~~~g~~e~~~~~~~~~~h 229 (471)
T d1wyub1 156 RVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHV------AALMLTNPNTLGLFERRILEISRLCK 229 (471)
T ss_dssp CEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTE------EEEEECSSCTTSCCCTTHHHHHHHHH
T ss_pred ccccCCcccccceeeeeecccceeecccccccccccchhhhhhhhccc------cceeeccCCCcccccchhhhhHHHHH
Confidence 345555666666655556677889999999999999999998766553 57777777776666667999999999
Q ss_pred HcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHH
Q psy852 223 EFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLL 302 (891)
Q Consensus 223 ~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (891)
+.+..+++|++--..+..
T Consensus 230 ~~g~~~~~~~~~~~~~~~-------------------------------------------------------------- 247 (471)
T d1wyub1 230 EAGVQLYYDGANLNAIMG-------------------------------------------------------------- 247 (471)
T ss_dssp HHTCEEEEEGGGGGGTTT--------------------------------------------------------------
T ss_pred hccccccccccchhhhhh--------------------------------------------------------------
Confidence 998888888765110000
Q ss_pred HHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC-----
Q psy852 303 SKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD----- 377 (891)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~----- 377 (891)
+..| +-..+|.+.++-|+.++.|.+
T Consensus 248 -------------------------------------------l~~p-------~~~g~div~vg~~q~~G~P~~~GGP~ 277 (471)
T d1wyub1 248 -------------------------------------------WARP-------GDMGFDVVHLNLHKTFTVPHGGGGPG 277 (471)
T ss_dssp -------------------------------------------TCCH-------HHHTCSEEECCTTTTTCCCCTTSCCC
T ss_pred -------------------------------------------cccc-------Cccccccccccccccccccccccccc
Confidence 0000 001357777777886655532
Q ss_pred ceEEEEeccccchhhcccCccccCCCCCC--cccccccccC----CCCC-hhHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy852 378 SSCLWVADRYKLTSALVVDPLYLQHGHEG--AIDYRHWGIP----LSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAK 450 (891)
Q Consensus 378 ~g~~~~r~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~----~sr~-~~~l~~w~~l~~~g~~G~~~ii~~~lelAr 450 (891)
.|.+-+++... ..+. ...+...... ..-.+...+. |+-. .-++..+..+.++|.+|++++.+.++..|+
T Consensus 278 ~G~~a~~~~~~--R~~P--GRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~ 353 (471)
T d1wyub1 278 SGPVGVKAHLA--PYLP--VPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNAR 353 (471)
T ss_dssp CCCEEECGGGG--GGCC--SCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeehhhhh--ccCC--CceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 46666665432 2221 1111111000 0001111111 2222 246788999999999999999999999999
Q ss_pred HHHHhhccCCcccccc
Q psy852 451 LFEGKVRRDPRFEISN 466 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~ 466 (891)
|++++|+. +++++..
T Consensus 354 Yla~~L~~-~G~~~~~ 368 (471)
T d1wyub1 354 YLKELLKE-KGYRVPY 368 (471)
T ss_dssp HHHHHHHH-TTCBCSS
T ss_pred HHHHHHhh-cCceecc
Confidence 99999965 8888764
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.31 E-value=5.3e-06 Score=91.83 Aligned_cols=285 Identities=12% Similarity=0.045 Sum_probs=154.8
Q ss_pred ccCCCCC-CHHHHHHHHHHHhcCCCCCc------cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 22 AYFPSGN-SYPSVLADMLSDAIGCIGFS------WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 22 ~~~~~~~-~~~~~~~~~l~~~~n~~~~~------~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
.-.++-+ ..|.+...+-+.+.|-..-- |.++-...+||..+.+...++||.+...
T Consensus 31 ~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~------------------ 92 (463)
T d2a7va1 31 ELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQ------------------ 92 (463)
T ss_dssp ECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTT------------------
T ss_pred eEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchh------------------
Confidence 3344444 34555555555555544322 2234457899999999999999998652
Q ss_pred ccccc-CCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHH-----HHHHcC--CeE
Q psy852 95 NIEDY-MTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK-----AAMMAF--VRL 166 (891)
Q Consensus 95 ~~~~~-~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~k-----aa~~~~--~~v 166 (891)
|+. +- ..+|+..+.+....+ -+.+.. -+.+=.+.-.|.|--. .....+ .+.
T Consensus 93 --w~vNVq-------p~SGs~An~av~~al--l~pgD~----------Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~ 151 (463)
T d2a7va1 93 --WGVNVQ-------PYSGSPANLAVYTAL--LQPHDR----------IMGLDLPDGGHLTHGYMSDVKRISATSIFFES 151 (463)
T ss_dssp --EEEECC-------CSSHHHHHHHHHHHH--CCSCEE----------CCC-----------------------------
T ss_pred --ccCCcc-------ccccHHHHHHHHHHH--cCCCce----------EEeeccCcCcccccccccccccccceeeEeee
Confidence 111 11 135654332222222 211100 0001112223443321 111112 345
Q ss_pred EEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCC
Q psy852 167 KILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFR 245 (891)
Q Consensus 167 ~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~ 245 (891)
...++| +++.||.+++++.+++.+ |-+|++ |.+..--.-|++++++||++.|.++++|+|+
T Consensus 152 ~~Y~~d~~~~~IDyd~~~~~a~~~k-----PklIi~--G~S~y~r~~d~~~~reIad~vga~l~~D~aH----------- 213 (463)
T d2a7va1 152 MPYKLNPKTGLIDYNQLALTARLFR-----PRLIIA--GTSAYARLIDYARMREVCDEVKAHLLADMAH----------- 213 (463)
T ss_dssp --CCBCTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHHHHHHTTCEEEEECGG-----------
T ss_pred eeeeccCCCCcCcHHHHHHHHhhcC-----CceEEe--cccccccccCHHHHHHHhhcccceEEechhh-----------
Confidence 556677 569999999999988764 656553 5566666779999999999999999999998
Q ss_pred ccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccc
Q psy852 246 PFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQS 325 (891)
Q Consensus 246 ~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (891)
+.|+
T Consensus 214 --~aGL-------------------------------------------------------------------------- 217 (463)
T d2a7va1 214 --ISGL-------------------------------------------------------------------------- 217 (463)
T ss_dssp --GHHH--------------------------------------------------------------------------
T ss_pred --hhHH--------------------------------------------------------------------------
Confidence 0010
Q ss_pred ccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCC
Q psy852 326 YRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE 405 (891)
Q Consensus 326 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~ 405 (891)
.+++.+-+| +++||.+|.+.||.+-+|-+ |++++++..+-.. .....-+.....
T Consensus 218 ---------------IA~g~~~sP--------~~~aDvvt~tTHKTlrGPrg-GiIl~~~~~~~~~--~~~~~~~~~~~~ 271 (463)
T d2a7va1 218 ---------------VAAKVIPSP--------FKHADIVTTTTHKTLRGARS-GLIFYRKGVKAVD--PKTGREIPYTFE 271 (463)
T ss_dssp ---------------HHTTSSCCG--------GGTCSEEEEESSGGGCSCSC-EEEEEECSEEEEE--TTTEEEEECCCH
T ss_pred ---------------hhhhhhcCh--------hhhhhhhhchhhhhhcCCCc-eEEEEcccccccc--cccCccchhHHH
Confidence 012222222 24689999999999999986 8888887532110 000000000000
Q ss_pred Ccccc-cccccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 406 GAIDY-RHWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 406 ~~~~~-~~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
..++. .-.+++++-... ..++-.+++..-...+.+.+++.+++|+.|++.|.+ .|++|+.
T Consensus 272 ~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~-~G~~vv~ 333 (463)
T d2a7va1 272 DRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE-RGYSLVS 333 (463)
T ss_dssp HHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGG
T ss_pred HHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh-CCCeeec
Confidence 01111 012445555543 344555666656677999999999999999999987 4888873
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=98.28 E-value=5.5e-05 Score=82.77 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=70.8
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.+|+.-...|.|+..++++.+.+++..+-+ |.++|++.++...+ ..+.+|++-..-+..|.+=|+.+|.++|+
T Consensus 132 d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~--~~~~~iv~egvySmdGd~apl~~l~~L~~ 204 (396)
T d2bwna1 132 LIIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAE 204 (396)
T ss_dssp CEEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred CceeehhhhhhccchhhhccccCceEeecc-----hHHHhhhHHhhhcc--cCceeEEEEeeccCcccccccHhHHHHhh
Confidence 467888899999999999888787777543 57778877765433 33567888888899999999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
+|++++.||-|+|
T Consensus 205 ~y~~~L~vDeAHs 217 (396)
T d2bwna1 205 EFGALTYIDEVHA 217 (396)
T ss_dssp HHTCEEEEECTTT
T ss_pred hhcceeeecccee
Confidence 9999999999994
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=1.5e-05 Score=85.96 Aligned_cols=82 Identities=4% Similarity=0.008 Sum_probs=69.3
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
-|+++..++.++..++...|...+.+++|.++.++.+++++.+.+.+ ..|+++ +..|..-|+.+|.++|++
T Consensus 75 eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t------~avi~v---h~~G~~~~~~~i~~~~~~ 145 (371)
T d2fnua1 75 EIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERT------KAIVSV---DYAGKSVEVESVQKLCKK 145 (371)
T ss_dssp EEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTE------EEEEEE---CGGGCCCCHHHHHHHHHH
T ss_pred eeecccccccccceeeeccCcccccccccccccccchhhhhhccchh------hccccc---cccccccccccccccccc
Confidence 48889999999999988888999999999999998888877665543 344433 577999999999999999
Q ss_pred cCCceeeeccc
Q psy852 224 FDVWLHVDGAY 234 (891)
Q Consensus 224 ~~~~lHvDaA~ 234 (891)
+++++.-|+|+
T Consensus 146 ~~i~lIEDaaq 156 (371)
T d2fnua1 146 HSLSFLSDSSH 156 (371)
T ss_dssp HTCEEEEECTT
T ss_pred cchhhccchhh
Confidence 99999999988
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=7.3e-07 Score=94.43 Aligned_cols=155 Identities=11% Similarity=-0.048 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHhcCCCCCc---c---ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy852 29 SYPSVLADMLSDAIGCIGFS---W---AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTP 102 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~---~---~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~ 102 (891)
.++.++..|-..+.|.++.. + .-+|.+.++=.++.+.|++++|.+++.. +
T Consensus 12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~--------v---------------- 67 (360)
T d1bjna_ 12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYK--------V---------------- 67 (360)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEE--------E----------------
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCE--------E----------------
Confidence 36888888888877655321 1 1478889999999999999999976421 0
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH---cCCeEEEEecCCCCcccH
Q psy852 103 ANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKILEPDDKNSLRG 179 (891)
Q Consensus 103 ~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~---~~~~v~~V~~d~~g~id~ 179 (891)
.+++|+++..+... ...... ++.++++. ..|+.......+ .+..++.+..+.++..+.
T Consensus 68 ----~~~~gs~t~~~~a~--~~~~~~------------~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (360)
T d1bjna_ 68 ----LFCHGGGRGQFAAV--PLNILG------------DKTTADYV-DAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRA 128 (360)
T ss_dssp ----EEESSHHHHHHHHH--HHHHCT------------TCCEEEEE-ESSHHHHHHHHHHTTTSEEEEEECEEEETTEEE
T ss_pred ----EEECCchHHHHhhh--hhcccc------------ccccccee-cccchhhhhHHHHhhcCccceeeccccCCCcch
Confidence 12344443333221 111111 12224443 334444443332 345666666667777777
Q ss_pred HHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 180 ATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 180 ~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+.+++.+... +.++++++.+|+||...|+.++. ++.+++.+++|++.
T Consensus 129 ~~~~~~~~~~------~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~ 175 (360)
T d1bjna_ 129 VKPMREWQLS------DNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSS 175 (360)
T ss_dssp ECCGGGCCCC------SSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTT
T ss_pred hhhhhhhccC------CceeEEEecccccccCcccccee--cccccceeeeeeec
Confidence 7666655444 34677778899999999998775 34566677777776
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.11 E-value=3.5e-06 Score=87.28 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCccc
Q psy852 31 PSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLG 110 (891)
Q Consensus 31 ~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~ 110 (891)
|.++..|..... ....|...|...++|+ +||+++|.+.. .+++
T Consensus 14 p~v~~A~~~a~~--g~~~yg~~p~~~~le~----~lA~~~G~~~~-------------------------------~~~~ 56 (343)
T d1m6sa_ 14 EEMRKAMAQAEV--GDDVYGEDPTINELER----LAAETFGKEAA-------------------------------LFVP 56 (343)
T ss_dssp HHHHHHHHTCCC--CCGGGTCCHHHHHHHH----HHHHHTTCSEE-------------------------------EEES
T ss_pred HHHHHHHHhhhc--CCcccCCCHHHHHHHH----HHHHHHCCCeE-------------------------------EEeC
Confidence 677777754432 2334556799999996 56788887632 1356
Q ss_pred chhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH---HHcCCeEEEEecCCCCcccHHHHHHHHH
Q psy852 111 GGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---MMAFVRLKILEPDDKNSLRGATLRQVMQ 187 (891)
Q Consensus 111 gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa---~~~~~~v~~V~~d~~g~id~~~L~~~l~ 187 (891)
+||.+ |...+..++.. .+ .++.....|++..... ......+..++. ..+..|++.+++.+.
T Consensus 57 sGt~A-~~~al~a~~~~-------------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~ 120 (343)
T d1m6sa_ 57 SGTMG-NQVSIMAHTQR-------------GD-EVILEADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAIR 120 (343)
T ss_dssp CHHHH-HHHHHHHHCCT-------------TC-EEEEETTCHHHHSSTTHHHHHTCCEEEEECE-ETTEECHHHHHHHSC
T ss_pred CHHHH-HHHHHHHHhcc-------------CC-ceeccccccceeeecccccccccceeecccc-ccCccCHHHHHHhhh
Confidence 88765 43333322221 11 2556667777775443 234445555553 467889999999998
Q ss_pred hhhhcCCcceEEEee-cccCccccc---cCHHHHHHHHHHcCCceeeeccccCC
Q psy852 188 QDETMGYIPFFVSTT-LGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 188 ~~~~~g~~p~~V~~t-~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
........+..++.+ ..++..|.+ +++.+|+++|+++|+++|+|+|++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~ 174 (343)
T d1m6sa_ 121 PRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFN 174 (343)
T ss_dssp CSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHH
T ss_pred hhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccc
Confidence 876655555544444 445555555 55667777889999999999999553
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=98.07 E-value=8.4e-05 Score=81.28 Aligned_cols=260 Identities=13% Similarity=0.076 Sum_probs=152.0
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+=+.+++.+.. +.. + +.++|..+|+..+-+.... .+..+|+.....|.|+..++++.+
T Consensus 95 LE~~lA~~~g~-e~a-l---l~~sG~~An~~~i~~l~~~-----------------~~~d~i~~D~~~Hasi~~g~~ls~ 152 (396)
T d2bwna1 95 LEAEIAGLHQK-EAA-L---VFSSAYNANDATLSTLRVL-----------------FPGLIIYSDSLNHASMIEGIKRNA 152 (396)
T ss_dssp HHHHHHHHTTC-SEE-E---EESCHHHHHHHHHHHHHHH-----------------STTCEEEEETTCCHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-Cce-e---eeecchHHHHHHHHHHhcc-----------------cCCCceeehhhhhhccchhhhccc
Confidence 34455566654 221 1 2346677777666543210 123478899999999999999998
Q ss_pred ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC---Cccc--------hhh----------h-----------
Q psy852 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL---GTTS--------CYR----------K----------- 575 (891)
Q Consensus 528 v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata---GTT~--------c~~----------~----------- 575 (891)
.++++.+.+ |.++|++.++.....+.+.+++.... |+.. |.+ |
T Consensus 153 a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G 227 (396)
T d2bwna1 153 GPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAG 227 (396)
T ss_dssp CCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCC
T ss_pred cCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeecccccc
Confidence 888888764 57888888876544333333332222 3322 222 1
Q ss_pred ----hcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHH
Q psy852 576 ----SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVI 651 (891)
Q Consensus 576 ----ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L 651 (891)
..-...+|-++-+..|.+++. |.+++.++............|+.+.. ++ +..+...-.++
T Consensus 228 ~~~~~~~~~~~di~~gTlsKa~g~~---Gg~v~~~~~~i~~l~~~~~~~ifSta----------lp---p~~~aa~~~al 291 (396)
T d2bwna1 228 VAERDGLMHRIDIFNGTLAKAYGVF---GGYIAASARMVDAVRSYAPGFIFSTS----------LP---PAIAAGAQASI 291 (396)
T ss_dssp HHHHHTCGGGCSEEEEESSSTTCSC---CEEEEECHHHHHHHHHHCHHHHTSBC----------CC---HHHHHHHHHHH
T ss_pred chhhcCCceeeeeeeeccccccccc---ccccchhHHHHHHHHhhcchhhhccc----------Cc---HHHHHHHHHHH
Confidence 111255799999999999855 55566555433221112222222110 00 11111122223
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEE--Ee-e
Q psy852 652 RTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLH--MV-P 727 (891)
Q Consensus 652 ~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~--~s-~ 727 (891)
+.+-.....+..++...+++++.+.|+.. ++.+. +..++|+.+.+. . +..+..+.++|. +.|++. +. |
T Consensus 292 ~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~-~~~spIvpv~ig-~-----~~~~~~~a~~lL~e~Gi~v~~i~~P 363 (396)
T d2bwna1 292 AFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPII-DHGSHIVPVVIG-D-----PVHTKAVSDMLLSDYGVYVQPINFP 363 (396)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSCEEEECC-C-----HHHHHHHHHHHHHHHCEECCEECTT
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHhc-CCCcC-CCCCCEEEEEeC-C-----HHHHHHHHHHHHHhCCEEEEEECCC
Confidence 33323333444556677889999998774 45554 346778887773 2 345667777754 579863 22 3
Q ss_pred ccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 728 s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
+...+..-+ ++++...|++|||+++++|+++
T Consensus 364 tVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 364 TVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp TSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 334555667 9999999999999999999875
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=98.05 E-value=2.4e-06 Score=91.42 Aligned_cols=161 Identities=12% Similarity=0.004 Sum_probs=100.9
Q ss_pred cccCCCCC-CHHHHHHHHHHHhcCCCC---Cccc---cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 21 HAYFPSGN-SYPSVLADMLSDAIGCIG---FSWA---ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~l~~~~n~~~---~~~~---~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
++|-|++. .++.++..|...+.|.++ ...+ -++.+.++-.++.+.|++++|.+++.. +
T Consensus 5 ~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~--------i------- 69 (361)
T d2c0ra1 5 YNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYK--------V------- 69 (361)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEE--------E-------
T ss_pred cccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCE--------E-------
Confidence 34444333 457888888887776433 2212 368899999999999999999986521 0
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH---HHcCCeEEEEe
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---MMAFVRLKILE 170 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa---~~~~~~v~~V~ 170 (891)
.+++|+++..+ .+.+..... + .+ .++.-.. +....+.. ...+..+..++
T Consensus 70 -------------~~~~gs~t~~~--ea~~~~l~~---~--------~~-~~l~~~~-g~~~~~~~~~~~~~g~~~~~~~ 121 (361)
T d2c0ra1 70 -------------LFIQGGASTQF--AMIPMNFLK---E--------GQ-TANYVMT-GSWASKALKEAKLIGDTHVAAS 121 (361)
T ss_dssp -------------EEESSHHHHHH--HHHHHHHCC---T--------TC-EEEEEEC-SHHHHHHHHHHHHHSCEEEEEE
T ss_pred -------------EEECCCchHHH--HHHHhcccc---C--------CC-ceEEEee-chhhhhhhhhhhhcCceeeeec
Confidence 12334432222 222211111 0 11 1222222 22222222 34577888999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+..+..+++.+++.+.... .++.+|++|...|+.+|.++|+++|+.++|||+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~----------~~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavs 175 (361)
T d2c0ra1 122 SEASNYMTLPKLQEIQLQDN----------AAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSS 175 (361)
T ss_dssp CGGGTTCSCCCGGGCCCCTT----------EEEEEEESEETTTTEECSSCCCCTTSCEEEECTT
T ss_pred cccccccchhhhhhhcccCc----------ceEEEEecccceecceEEEeeccCCceEEEEeec
Confidence 88888899988877655442 2344677899999999999999999999999987
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=0.00014 Score=77.45 Aligned_cols=249 Identities=10% Similarity=0.039 Sum_probs=149.9
Q ss_pred HHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEE
Q psy852 452 FEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLK 531 (891)
Q Consensus 452 l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~ 531 (891)
+++.++-.++ .|+ ++.|+++++..++.+... .++-+|+++.-.......++.+.|.+++
T Consensus 65 ia~~~gv~pe-~I~--it~Gs~eai~~~~~~~~~------------------pgd~~Vl~~~P~y~~~~~~~~~~g~~v~ 123 (354)
T d1fg7a_ 65 YAQYAGVKPE-QVL--VSRGADEGIELLIRAFCE------------------PGKDAILYCPPTYGMYSVSAETIGVECR 123 (354)
T ss_dssp HHHHHTSCGG-GEE--EESHHHHHHHHHHHHHCC------------------TTTCEEEECSSSCTHHHHHHHHHTCEEE
T ss_pred HHHHhCCChH-Hee--eccCchHHHHHHHHHhhc------------------cccccccccccccccchhhhhccCceee
Confidence 3344433344 566 678999998887765311 1233567776676777777788899999
Q ss_pred EecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhh------------h--------hc
Q psy852 532 ILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYR------------K--------SQ 577 (891)
Q Consensus 532 ~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~------------~--------ld 577 (891)
.+|.++++.+|++++++.+.+ ...++++. ..|+.. |.. + ..
T Consensus 124 ~~~~~~~~~~d~~~l~~~~~~-----~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~ 198 (354)
T d1fg7a_ 124 TVPTLDNWQLDLQGISDKLDG-----VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWL 198 (354)
T ss_dssp ECCCCTTSCCCHHHHHTSCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGT
T ss_pred ccccccccccchhhhhhcccc-----cceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhh
Confidence 999999999999999877642 12344443 234433 100 0 00
Q ss_pred CCCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH
Q psy852 578 GIEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL 656 (891)
Q Consensus 578 Gi~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~ 656 (891)
....--.+.-+.+|.++.| .-+|+++. +++.+.........| .+ +...... ...++..-..
T Consensus 199 ~~~~~~iv~~S~SK~~~laGlRiGy~i~-~~~~i~~l~~~~~~~--------------~~--~~~~~~~-a~~~~~~~~~ 260 (354)
T d1fg7a_ 199 AEYPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLLMKVIAPY--------------PL--STPVADI-AAQALSPQGI 260 (354)
T ss_dssp TTCTTEEEEEESSSTTCCGGGCCEEEEE-CHHHHHHHHHHSCSS--------------CS--CHHHHHH-HHHHTSHHHH
T ss_pred cccccceEEeCCccccCCCccccccccc-cchhhhhhhhhcCcc--------------ch--hhHHHHH-HHHHHhhhcc
Confidence 1111123445899998866 66888765 333332221111111 01 1111100 0011111233
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-cCCeE
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ-EQNDE 735 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~-~g~~~ 735 (891)
..+...+++..+.++++.+.+.+++++..+.+...+-+.+++. ....+.+.|.++|+++..+... ....+
T Consensus 261 ~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~---------~~~~~~~~L~~~gIlvr~~~~~~~~~~~ 331 (354)
T d1fg7a_ 261 VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK---------ASSAVFKSLWDQGIILRDQNKQPSLSGC 331 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET---------THHHHHHHHHHTTEECEECTTSTTCTTE
T ss_pred ccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCC---------CHHHHHHHHHHCCcEEecCCCCCCCCCE
Confidence 3455566677788889999999998877666667777778874 2456888899999886554433 22346
Q ss_pred E-EEecCCCCHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ 756 (891)
+ ++++ |+++.++++++|+
T Consensus 332 lRisig---t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 332 LRITVG---TREESQRVIDALR 350 (354)
T ss_dssp EEEECC---CHHHHHHHHHHHH
T ss_pred EEEEeC---CHHHHHHHHHHHh
Confidence 6 8875 7899999998886
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.01 E-value=4.7e-06 Score=90.23 Aligned_cols=284 Identities=10% Similarity=0.005 Sum_probs=164.9
Q ss_pred HHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH
Q psy852 444 RHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA 522 (891)
Q Consensus 444 ~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka 522 (891)
+.++.++ .+++.++..++ +++ +++++|++++..+..+-....... ... .+++++..|++....
T Consensus 70 ~~~e~~R~~iA~llga~~~-ei~--~~~~~T~~~~~~~~~~~~~~~~~~------------~~~-~vi~~~~~~~~~~~~ 133 (404)
T d1qz9a_ 70 DLSERLGNRLATLIGARDG-EVV--VTDTTSINLFKVLSAALRVQATRS------------PER-RVIVTETSNFPTDLY 133 (404)
T ss_dssp GHHHHHHHHHHTTTTCCTT-SEE--ECSCHHHHHHHHHHHHHHHHHHHS------------TTC-CEEEEETTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC-cEE--EecCchHHHHHHhhhhhhhhcccC------------CCc-EEEEeccccchHHHH
Confidence 3444455 67888887776 666 678899998776654433222111 112 344555555555444
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC---------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI--------- 579 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi--------- 579 (891)
..-.+.++..++.+.++..+++.++++|++++. .+ ...|++..|+.. |++ ++|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~--lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~ 211 (404)
T d1qz9a_ 134 IAEGLADMLQQGYTLRLVDSPEELPQAIDQDTA--VVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVD 211 (404)
T ss_dssp HHHHHHHHHCSSCEEEEESSGGGHHHHCSTTEE--EEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCC
T ss_pred HHhhhheeeeeceeccccccchhHHHhcCCCce--EEEEecccccccceecHHHHhccccccccceeEEeeccccccccc
Confidence 432223334445555677888899999987643 11 223344566665 433 35553
Q ss_pred ---CCccEEEEcCcccCCcccc-cEEEEEeCCccchhhhccCCCccccCCCCCccccCCc-cccccccc--------chH
Q psy852 580 ---EYADSFNVNVNKWLLTAFD-SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG-IPLSRRFR--------SLK 646 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g-~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t-i~~SRr~~--------aL~ 646 (891)
..+|.+++++|||++.|.+ +|+++.++. .+...-.....+-.... .......+. ....+++. .+.
T Consensus 212 ~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (404)
T d1qz9a_ 212 LHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQ-LCDLVPQPLSGWFGHSR-QFAMEPRYEPSNGIARYLCGTQPITSLAM 289 (404)
T ss_dssp HHHHTCSEEEECSSSTTCCCTTCCCEEEECTT-TTTTSCCSCCCGGGBCT-TSCCCSSCCBCSSGGGGCCSCCCHHHHHH
T ss_pred cccccceEEEEechhhcccCCceEEEEEechh-hhhhCCccccccCCccc-cccccccccccccchhhhhhhccchhHHH
Confidence 2479999999999987666 555555544 22211100001100000 000000000 01111111 122
Q ss_pred HHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc----eeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 647 LWFVIRT---YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR----LGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 647 lW~~L~~---lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+-..++. .|...+++...........+.+.+...++++++++.+ .++|+|++.+ ...+.+.|.+
T Consensus 290 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~---------~~~v~~~L~~ 360 (404)
T d1qz9a_ 290 VECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---------GYAVIQALID 360 (404)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---------HHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCC---------HHHHHHHHHH
Confidence 2333333 4556666666666667777777778889999987643 5799999852 4678899999
Q ss_pred CCcEEEeeccccCCeEE-EEec-CCCCHHHHHHHHHHHHHHHH
Q psy852 720 SGRLHMVPASQEQNDEV-FELQ-ERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 720 ~G~~~~s~s~~~g~~~l-~sv~-~~tT~edId~li~~L~ei~~ 760 (891)
.|++ +..+...++ ||++ .+||++|||+++++|+++++
T Consensus 361 ~gi~----~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~ 399 (404)
T d1qz9a_ 361 RGVI----GDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILD 399 (404)
T ss_dssp TTEE----CEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCE----EeecCCCeEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 9986 334455667 9985 58999999999999998874
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.99 E-value=1.5e-05 Score=86.02 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=60.9
Q ss_pred EEEec-CCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeec-ccCccccccCHHHHHHHH
Q psy852 144 MAYCS-KEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL-GTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 144 ~v~~S-~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~-Gtt~~GavDpl~~I~~i~ 221 (891)
+++.+ ..+|.|+..++.+.+.++ ++.+ |+++|++++++.+ .+|+.+. .|..++.++++++|+++|
T Consensus 94 vi~~~~~~~~~~~~~~~~l~g~~~--v~~~-----d~e~l~~~i~~~t------k~i~~~~p~n~~~~~~~~l~~i~~ia 160 (366)
T d2aeua1 94 IHYLPELPGHPSIERSCKIVNAKY--FESD-----KVGEILNKIDKDT------LVIITGSTMDLKVIELENFKKVINTA 160 (366)
T ss_dssp EEECSSSSCCTHHHHHHHHTTCEE--EEES-----CHHHHHTTCCTTE------EEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred EEEecCCCcchhHHHHHHhcCCeE--ECCC-----CHHHHHHhcCCCc------eEEEEEecCCCCcCCHHHHHHHHHHh
Confidence 44554 468999999998877654 4443 7899998887764 3555554 455677899999999999
Q ss_pred HHcCCceeeecccc
Q psy852 222 KEFDVWLHVDGAYA 235 (891)
Q Consensus 222 ~~~~~~lHvDaA~G 235 (891)
+++|+|+++|.|||
T Consensus 161 ~~~~~~~i~De~y~ 174 (366)
T d2aeua1 161 KNKEAIVFVDDASG 174 (366)
T ss_dssp HHHTCCEEEECTTH
T ss_pred ccCcEEEEEecCcc
Confidence 99999999999994
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=0.00018 Score=78.40 Aligned_cols=272 Identities=9% Similarity=0.014 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEE--ecc
Q psy852 436 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAY--CSK 513 (891)
Q Consensus 436 ~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~--~S~ 513 (891)
+-+.++-.-+.++|+.+... ....|- ..+|+.||+.++.+. .+. +..++- .+.
T Consensus 68 ~~iD~iE~la~~ra~~lF~a----~~anVq---p~SGs~AN~av~~Al----l~p--------------GD~Il~l~l~~ 122 (416)
T d1dfoa_ 68 EYVDIVEQLAIDRAKELFGA----DYANVQ---PHSGSQANFAVYTAL----LEP--------------GDTVLGMNLAH 122 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----SEEECC---CSSHHHHHHHHHHHH----CCT--------------TCEEEEECTTT
T ss_pred hhHHHHHHHHHHHHHHHhCC----Ccceee---cccCccHHHHHHHHh----cCC--------------CCeeeeccccc
Confidence 34444444555666655432 222222 246789999888763 111 111121 234
Q ss_pred cchHHHHHHHHHc--CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------hhh------
Q psy852 514 EAHSCVEKAAMMA--FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------CYR------ 574 (891)
Q Consensus 514 ~aH~Sv~Kaa~l~--gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c~~------ 574 (891)
-.|.+....+... ..+....++|+++.+|.+.|++...+. .|-+|++..-... |.+
T Consensus 123 GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~-----kPklIi~G~S~y~r~~d~~~~reiad~vga~l~ 197 (416)
T d1dfoa_ 123 GGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEH-----KPKMIIGGFSAYSGVVDWAKMREIADSIGAYLF 197 (416)
T ss_dssp TCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHH-----CCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEE
T ss_pred cccccccccccccCceEEEEecccCCccCccHHHHHHHHHHh-----ccceEEecccccccccCHHHHHHHHHhcCceEE
Confidence 4455554433322 346777788889999999999998874 2444443321111 221
Q ss_pred ----hh----------cCCCCccEEEEcCcccCCcccccEEEEEeCC-ccchhhhc-cCCCccccCCCCCccccCCcccc
Q psy852 575 ----KS----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADR-YKLTSALV-VDPLYLQHGHEGAIDYRHWGIPL 638 (891)
Q Consensus 575 ----~l----------dGi~~aDSIs~d~HK~L~~P~g~G~llvR~~-~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~ 638 (891)
|. +-++.+|.+|.+-||.|.+|-| |++++++. +.+.+.+. .--+ ++++
T Consensus 198 ~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i~~avfP---------------g~qg 261 (416)
T d1dfoa_ 198 VDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKLNSAVFP---------------GGQG 261 (416)
T ss_dssp EECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHHHHHHTT---------------TTCS
T ss_pred cchhhhhcceeccccCCcccccceeeeehhhcccCCCc-eEEEeccchHhHHHHHHhhhCc---------------cccc
Confidence 22 2268899999999999999974 67777643 22221111 0001 1222
Q ss_pred cccccc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHH
Q psy852 639 SRRFRS-LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLED 716 (891)
Q Consensus 639 SRr~~a-L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~ 716 (891)
+-.... .....+++..-...+.+..++..++|+.|++.|.+. +|.+++ ..+.++|...+.+. +-........
T Consensus 262 gp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~~~-----~~~G~~a~~~ 335 (416)
T d1dfoa_ 262 GPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLVDK-----NLTGKEADAA 335 (416)
T ss_dssp SCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG-----TCCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEeccc-----CCCHHHHHHH
Confidence 221222 233455555556778899999999999999999885 899985 35677888888654 2234666777
Q ss_pred HHhCCcEEEeecc-------ccCCeEEEE----ecCCCCHHHHHHHHHHHHHHH
Q psy852 717 INASGRLHMVPAS-------QEQNDEVFE----LQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 717 L~~~G~~~~s~s~-------~~g~~~l~s----v~~~tT~edId~li~~L~ei~ 759 (891)
|.+.|+..-.-+. ....++.+. +.+...++|++++.+.|.+++
T Consensus 336 Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l 389 (416)
T d1dfoa_ 336 LGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVL 389 (416)
T ss_dssp HHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 8888987321111 111223355 455789999999999888776
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.92 E-value=0.00021 Score=77.52 Aligned_cols=272 Identities=9% Similarity=0.008 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEE--ec
Q psy852 435 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAY--CS 512 (891)
Q Consensus 435 ~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~--~S 512 (891)
-+-+.++-.-+.++|+.+... ....| -..+|+.||+..+.+.-+ ++..++- .+
T Consensus 64 ~~~id~iE~la~~ra~~lF~a----~~anV---qp~SGs~An~av~~all~------------------pGD~im~l~l~ 118 (405)
T d1kl1a_ 64 CEYVDIVEELARERAKQLFGA----EHANV---QPHSGAQANMAVYFTVLE------------------HGDTVLGMNLS 118 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC----SEEEC---CCSSHHHHHHHHHHHHCC------------------TTCEEEEECGG
T ss_pred chhHHHHHHHHHHHHHHHhCC----Cccee---eccCchHHHHHHHHHhcC------------------CCCEEEEeecc
Confidence 344445555555666655432 22222 234678899877666311 1111222 23
Q ss_pred ccchHHHHHHHHH--cCceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------hhh----
Q psy852 513 KEAHSCVEKAAMM--AFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------CYR---- 574 (891)
Q Consensus 513 ~~aH~Sv~Kaa~l--~gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c~~---- 574 (891)
.-.|.+..+.... ...++...|+| +++.+|.+++++.+++. .|-+|++..-... |.+
T Consensus 119 ~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~-----kPklIi~G~S~y~r~~d~~~~reIad~vga~ 193 (405)
T d1kl1a_ 119 HGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLH-----RPKLIVAAASAYPRIIDFAKFREIADEVGAY 193 (405)
T ss_dssp GTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEEECCSSCCSCCCHHHHHHHHHHHTCE
T ss_pred cccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhh-----CcceEEecccccccccChHHHHHHHhhhCCE
Confidence 3446555443322 23467777887 55889999999999874 2444444322221 222
Q ss_pred ------hhc----------CCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccc
Q psy852 575 ------KSQ----------GIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPL 638 (891)
Q Consensus 575 ------~ld----------Gi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~ 638 (891)
|+. -+++||-+|.+-||.|.+|-| |+++++++ .....-..--+++ ++
T Consensus 194 l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrg-g~I~~~~~-~~~~i~~avfPg~---------------qg 256 (405)
T d1kl1a_ 194 LMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQ-FAKQIDKAIFPGI---------------QG 256 (405)
T ss_dssp EEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHH-HHHHHHHHHTTTT---------------CS
T ss_pred EecchhhHhhhhhhhhcCChhhhhhheeccccccccCCCC-ceEEecch-hHHHHHhhhCccc---------------cc
Confidence 222 268899999999999999975 56666543 2221111101121 22
Q ss_pred cccccc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHH
Q psy852 639 SRRFRS-LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLED 716 (891)
Q Consensus 639 SRr~~a-L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~ 716 (891)
+=.... ..+..+++......+++..++..++|+.|++.|.+ .+|.+++. .+.++|...+.+. +-........
T Consensus 257 gp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~-~G~~vv~ggTd~H~vlvdl~~~-----~~~g~~ae~~ 330 (405)
T d1kl1a_ 257 GPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN-EGFTLVSGGTDNHLLLVDLRPQ-----QLTGKTAEKV 330 (405)
T ss_dssp SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECGGG-----TCCHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-CCceeecCCCccceeecccccc-----CCcHHHHHHH
Confidence 111121 23344555555678889999999999999999988 58999854 5677888887654 2233445556
Q ss_pred HHhCCcEEEeecc-------ccCCeEEEE----ecCCCCHHHHHHHHHHHHHHH
Q psy852 717 INASGRLHMVPAS-------QEQNDEVFE----LQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 717 L~~~G~~~~s~s~-------~~g~~~l~s----v~~~tT~edId~li~~L~ei~ 759 (891)
|.+.|++.-.-+. ..-.++.+. +.+...++|+.++.+.|.+++
T Consensus 331 Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l 384 (405)
T d1kl1a_ 331 LDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVL 384 (405)
T ss_dssp HHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 7778876321110 111223355 455789999999998888766
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=97.92 E-value=0.00026 Score=78.67 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=134.1
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+-+++++.+... . .+ ++++|+.||.+++.+.-+ +.-.|++...-+.+.. .....|
T Consensus 80 lE~~~a~l~G~e-~--al--~~~SGt~An~~a~~~l~~-------------------~Gd~Vi~~~~f~~~~~-~i~~~g 134 (456)
T d1c7ga_ 80 LEKTVKELFGFK-H--IV--PTHQGRGAENLLSQLAIK-------------------PGQYVAGNMYFTTTRF-HQEKNG 134 (456)
T ss_dssp HHHHHHHHHCCS-E--EE--EESSHHHHHHHHHHHHCC-------------------TTEEEEESSCCHHHHH-HHHHTT
T ss_pred HHHHHHHHhCCC-e--EE--ECCCHHHHHHHHHHHhcC-------------------CCCeEecCcchHHHHH-HHHHcC
Confidence 345555555442 1 22 567899999988766311 1113444432222221 112345
Q ss_pred ceEEEecC----------CCCCCcCHHHHHHHHHhhhhcCCccEEEEe----cCCccc------------hhh-----hh
Q psy852 528 VRLKILEP----------DDKNSLRGATLRQVMQQDETMGYIPFFVST----TLGTTS------------CYR-----KS 576 (891)
Q Consensus 528 v~v~~Vp~----------d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva----taGTT~------------c~~-----~l 576 (891)
...+.+.+ ...|.+|+++|+++|++.... .++++++. ..|... |.+ ++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~-~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~ 213 (456)
T d1c7ga_ 135 ATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE-NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFY 213 (456)
T ss_dssp EEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG-GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred ceeeeccccccccccccCCccccCCHHHHHHHhhhcCCc-cceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEE
Confidence 44443332 245889999999999986543 33444332 233322 433 23
Q ss_pred cCC-----------------------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCC
Q psy852 577 QGI-----------------------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG 627 (891)
Q Consensus 577 dGi-----------------------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~ 627 (891)
|+. ..+|++++++||.+++|.| |+++.++.......-.....+ .+.
T Consensus 214 D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~~r~~~~~~--~g~-- 288 (456)
T d1c7ga_ 214 DATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAKELVVVY--EGM-- 288 (456)
T ss_dssp ECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHHHHHHHHHH--TCC--
T ss_pred EcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHHHHHhcccc--CCC--
Confidence 432 3589999999999999886 666666654332211100000 000
Q ss_pred CccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEe---cCC-cc
Q psy852 628 AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRL---RSE-NN 703 (891)
Q Consensus 628 ~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~---~~~-~~ 703 (891)
...+...++ ....+...+...- + .+.+++..+.+++|.++|++. ++.++.++..+.+.... .+. ..
T Consensus 289 ----~~~g~~~~~--~~~a~a~~l~e~~--~-~~~l~~r~~~~~~L~e~L~~~-g~~vv~p~g~~~v~vda~~~~~~i~~ 358 (456)
T d1c7ga_ 289 ----PSYGGLAGR--DMEAMAIGLREAM--Q-YEYIEHRVKQVRYLGDKLREA-GVPIVEPTGGHAVFLDARRFCPHLTQ 358 (456)
T ss_dssp ----TTTTTCCHH--HHHHHHHHHHHHT--C-HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHCTTSCG
T ss_pred ----cccchhhHH--HHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHhc-cCCcccCCCCcceeEechhhccCCCc
Confidence 000001111 1122222222211 1 234556677888899998875 55565555544443221 111 01
Q ss_pred hhhhhhHHHHHHHH-HhCCcEEEe-ec--c----------ccCCeEE-EEecCCC-CHHHHHHHHHHHHHHH
Q psy852 704 LIADQNNRKLLEDI-NASGRLHMV-PA--S----------QEQNDEV-FELQERK-RKDDLAYKRSFFVRML 759 (891)
Q Consensus 704 ~~~d~ln~~L~~~L-~~~G~~~~s-~s--~----------~~g~~~l-~sv~~~t-T~edId~li~~L~ei~ 759 (891)
.+. ..+.+...| .+.|+.... ++ . ......+ +++..++ |++|||.++++|+++.
T Consensus 359 ~~~--~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~ 428 (456)
T d1c7ga_ 359 DQF--PAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLY 428 (456)
T ss_dssp GGC--HHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ccc--cHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHH
Confidence 111 223444444 456754211 11 0 0112345 8765443 9999999999999876
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=97.84 E-value=0.00048 Score=74.40 Aligned_cols=261 Identities=9% Similarity=0.019 Sum_probs=154.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCcCHHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATL 546 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~mD~~~L 546 (891)
.+++||.|+..+|.+..- .+.-.|++++..+.+...+....|.+++.+++++ ++.||++.+
T Consensus 54 ~~~SGt~Al~lal~~l~~------------------~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~ 115 (384)
T d1b9ha_ 54 AVTNGTHALELALQVMGV------------------GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAV 115 (384)
T ss_dssp EESCHHHHHHHHHHHTTC------------------CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHH
T ss_pred EeCCHHHHHHHHHHHcCC------------------CCCCEEEEeccccccccccccccccccccccccccccccchhhh
Confidence 456889998888866310 1223588999999999999988999999999875 588999999
Q ss_pred HHHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcC-----CCCccEEEEcCcccCCcccc
Q psy852 547 RQVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQG-----IEYADSFNVNVNKWLLTAFD 598 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldG-----i~~aDSIs~d~HK~L~~P~g 598 (891)
++.+...++ .++++...|... |.++ .+| ...+..+||.+.|.+.+.-
T Consensus 116 ~~~i~~~tk----~i~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~- 190 (384)
T d1b9ha_ 116 AAAVTPRTK----VIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGE- 190 (384)
T ss_dssp HHHCCTTEE----EECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSS-
T ss_pred ccccccccc----ccccccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecccccccccccc-
Confidence 999876533 233344445443 3321 112 2446778888999876543
Q ss_pred cEEEEEeCCccchhhhccCCCccc-cCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy852 599 SSCLWVADRYKLTSALVVDPLYLQ-HGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKV 677 (891)
Q Consensus 599 ~G~llvR~~~~L~~~l~~~~~Yl~-~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L 677 (891)
-|++++.+++.....-...-.+.. ......+.....+.. . +...+. +++-....+.+.+.+++..++++++.+.|
T Consensus 191 GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n-~-rms~l~--Aaig~~qL~~ld~~~~~R~~~~~~y~~~L 266 (384)
T d1b9ha_ 191 GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSN-M-RLNEFS--ASVLRAQLARLDEQIAVRDERWTLLSRLL 266 (384)
T ss_dssp CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCB-C-BCBHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccc-c-ccccch--hhhhhhhhhhcccchhhhhhhhhhhhhhh
Confidence 467777777543322110000100 000000110111111 1 222232 22233345678888899999999999999
Q ss_pred ccCCCcEEeCCCc------eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee-cccc-------------------
Q psy852 678 RRDPRFEISNDVR------LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP-ASQE------------------- 731 (891)
Q Consensus 678 ~~~~~~eil~~~~------~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~-s~~~------------------- 731 (891)
++++++.....+. .....|++.... ...-..+.+.|.+.|+-.... ..+.
T Consensus 267 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~ 342 (384)
T d1b9ha_ 267 GAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIA 342 (384)
T ss_dssp HTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHH
T ss_pred hcccccccccccccccccccccccceecccc----cccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccc
Confidence 9998876543221 234566664331 111236889999999742111 1000
Q ss_pred ---------CCeEE-EEecCCCC-HHHHHHHHHHHHHHH
Q psy852 732 ---------QNDEV-FELQERKR-KDDLAYKRSFFVRML 759 (891)
Q Consensus 732 ---------g~~~l-~sv~~~tT-~edId~li~~L~ei~ 759 (891)
....+ +-.++.+| ++||+.+++.|++.+
T Consensus 343 ~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l 381 (384)
T d1b9ha_ 343 RRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAV 381 (384)
T ss_dssp HTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHH
Confidence 00134 44566666 689999999999876
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=0.0023 Score=67.58 Aligned_cols=88 Identities=11% Similarity=-0.048 Sum_probs=68.6
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC---CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD---DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d---~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
|++..-.|......+...+.+++.++.+ +.+.+|++.+++.+.+.. +.+++.+.-+|.||.+-+ +.+|+
T Consensus 85 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~-----~~~i~l~~p~NPTG~~~s~~~~~~i~ 159 (361)
T d1d2fa_ 85 VVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPE-----CKIMLLCSPQNPTGKVWTCDELEIMA 159 (361)
T ss_dssp EEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTT-----EEEEEEESSCTTTCCCCCTTHHHHHH
T ss_pred cccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCC-----ceeEEecccccccccccchhhhhhhh
Confidence 6666667888877777778888888764 344699999999886543 346666778999998765 77899
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++++++.+|.+|+++
T Consensus 160 ~~~~~~~~~lI~De~y~~~ 178 (361)
T d1d2fa_ 160 DLCERHGVRVISDEIHMDM 178 (361)
T ss_dssp HHHHHTTCEEEEECTTTTC
T ss_pred hhhhhhheeeeeccccccc
Confidence 9999999999999999554
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=97.77 E-value=0.00016 Score=77.50 Aligned_cols=264 Identities=11% Similarity=0.095 Sum_probs=157.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLR 547 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le 547 (891)
.+++||.|+.+++.+.... ...+..|+++...+.++.-+....|.+++.+++|++..+++++++
T Consensus 51 ~~~Sgt~Al~~al~al~~~----------------~~~~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~ 114 (371)
T d2fnua1 51 VFNSATSALLTLYRNFSEF----------------SADRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALE 114 (371)
T ss_dssp EESCHHHHHHHHHHHSSCC----------------CTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSG
T ss_pred EEecHHHHHHHHHHHhccc----------------CCCCCeeecccccccccceeeeccCcccccccccccccccchhhh
Confidence 4568888888887764221 012346899999999999888889999999999999999988887
Q ss_pred HHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hc-----CCCCccEEEEcCcccCCccccc
Q psy852 548 QVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQ-----GIEYADSFNVNVNKWLLTAFDS 599 (891)
Q Consensus 548 ~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ld-----Gi~~aDSIs~d~HK~L~~P~g~ 599 (891)
+.+...+ ..++++...|... |.++ .+ ....+..+||.+.|-+.+- +-
T Consensus 115 ~~~~~~t----~avi~vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g-~G 189 (371)
T d2fnua1 115 KLINERT----KAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTA-EG 189 (371)
T ss_dssp GGCCTTE----EEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS-SC
T ss_pred hhccchh----hccccccccccccccccccccccccchhhccchhhccCceeccccCCccccccccccccccccccc-cc
Confidence 7665532 2445556667654 3321 11 1244788889999988764 44
Q ss_pred EEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Q psy852 600 SCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR 679 (891)
Q Consensus 600 G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~ 679 (891)
|+++..+.+.....-.....+..............+.. .| +.-+. +++-....+.+.+.+++..++++++.+.|+.
T Consensus 190 G~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n-~r-~sel~--Aaigl~qL~~l~~~~~~R~~~~~~y~~~l~~ 265 (371)
T d2fnua1 190 GAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHN-FR-LNEIQ--SALGLSQLKKAPFLMQKREEAALTYDRIFKD 265 (371)
T ss_dssp EEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCB-CC-CCHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEeechhhhhhccccccccccccccccccccccccc-cc-ccchh--hhhhhhhhhhccchhhhhhhhhhhhcccccc
Confidence 67777666544332221111111000000011111221 11 11121 2333344566788888999999999999999
Q ss_pred CCCcEEeCCCc-----eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe---ecc---------ccCC---------
Q psy852 680 DPRFEISNDVR-----LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV---PAS---------QEQN--------- 733 (891)
Q Consensus 680 ~~~~eil~~~~-----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s---~s~---------~~g~--------- 733 (891)
.+++.+..+.. .....+.+.... ...-..+.+.|.++|+-... +.. ..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~ 341 (371)
T d2fnua1 266 NPYFTPLHPLLKDKSSNHLYPILMHQKF----FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYH 341 (371)
T ss_dssp CSSEEESGGGCSSCCCCSCEEEEECGGG----GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHH
T ss_pred cccccccccccccccccccccccccccc----hhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHh
Confidence 88888764321 122233333210 11234688889888875211 100 0111
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..+ +-+++..|++||+++++.|.+..+
T Consensus 342 ~~l~LP~~~~lt~~di~~I~~~i~~~~~ 369 (371)
T d2fnua1 342 AEISLPCHANLNLESVQNIAHSVLKTFE 369 (371)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CeEECcCCCCCCHHHHHHHHHHHHHHHH
Confidence 133 446778999999999999988764
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=97.76 E-value=0.00051 Score=75.04 Aligned_cols=93 Identities=9% Similarity=0.043 Sum_probs=75.9
Q ss_pred EEEecCCCChHHHHHHH-HcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHH
Q psy852 144 MAYCSKEAHSCVEKAAM-MAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I 217 (891)
.|++..-++.+....+. .++.+++.|+++. ++.+|+++++..++...+.+..+.+++++--+|.||.+-+ +++|
T Consensus 134 ~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i 213 (428)
T d1iaya_ 134 AFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSV 213 (428)
T ss_dssp EEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred EEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchh
Confidence 36676777878877775 4678999999874 4689999999988877666777778888888999998866 6788
Q ss_pred HHHHHHcCCceeeeccccC
Q psy852 218 GPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG 236 (891)
+++|++++++|.+|.+|+.
T Consensus 214 ~~~a~~~~~~vI~De~Y~~ 232 (428)
T d1iaya_ 214 LSFTNQHNIHLVCDEIYAA 232 (428)
T ss_dssp HHHHHTTTCEEEEECTTGG
T ss_pred heeeccCcEEEEecccccc
Confidence 8999999999999999954
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=97.74 E-value=0.00068 Score=72.34 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=62.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
-|+++..++.+...++...|...+.+++|++...+....+........+ +.+|+++ ...|...++.+|.++|++
T Consensus 63 eVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~---~~aii~~---~~~G~~~d~~~i~~~~~~ 136 (374)
T d1o69a_ 63 IVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKK---PKALILT---HLYGNAAKMDEIVEICKE 136 (374)
T ss_dssp EEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSC---CCEEEEE---CGGGCCCCHHHHHHHHHH
T ss_pred EEEeCCcchHhhHHHHhhccceeEecccccccccccccccccchhcccc---ccccccc---ccccchhhhHHHHHHhhc
Confidence 3888999999999999878889999999976554444333332222211 2234433 335888899999999999
Q ss_pred cCCceeeeccc
Q psy852 224 FDVWLHVDGAY 234 (891)
Q Consensus 224 ~~~~lHvDaA~ 234 (891)
+|+.|.-|+|+
T Consensus 137 ~~i~vIED~a~ 147 (374)
T d1o69a_ 137 NDIVLIEDAAE 147 (374)
T ss_dssp TTCEEEEECTT
T ss_pred cCcchhhhhhh
Confidence 99999999988
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.73 E-value=0.0019 Score=71.11 Aligned_cols=223 Identities=9% Similarity=0.022 Sum_probs=134.9
Q ss_pred ceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------hhh----------hhcC-------
Q psy852 528 VRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------CYR----------KSQG------- 578 (891)
Q Consensus 528 v~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c~~----------~ldG------- 578 (891)
.+....++|++ +.+|.+.|++...+. .|-+|++..-... |.+ |+.|
T Consensus 153 ~~~~~y~v~~~~~~IDyd~l~~~a~~~-----kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~ 227 (470)
T d1rv3a_ 153 FESMAYKVNPDTGYIDYDRLEENARLF-----HPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV 227 (470)
T ss_dssp SEEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS
T ss_pred eEeeEEEEecccCcccHHHHHHHHHhh-----CcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhhhhcccccc
Confidence 46788888865 999999999998864 2555554333322 221 3222
Q ss_pred ---CCCccEEEEcCcccCCcccccEEEEEeCCccchh-hhccC--CCccccCCCCCccccC-Cccccccccc-chHHHHH
Q psy852 579 ---IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS-ALVVD--PLYLQHGHEGAIDYRH-WGIPLSRRFR-SLKLWFV 650 (891)
Q Consensus 579 ---i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~-~l~~~--~~Yl~~~~e~~~~~~~-~ti~~SRr~~-aL~lW~~ 650 (891)
++++|.+|.+-||.|-+|-| |++++++...-.. ..... ..|-. ..+..- -+++++=... ..++..+
T Consensus 228 ~sPl~~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~~~~~~~~~-----~i~~avFPg~qggph~~~IAa~Ava 301 (470)
T d1rv3a_ 228 PSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLES-----LINSAVFPGLQGGPHNHAIAGVAVA 301 (470)
T ss_dssp CCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHH-----HHHHHHTTTTCCSCCHHHHHHHHHH
T ss_pred CChhheeeeeeeehhhhccCCcc-eEEEEccccccccccccchhHHHHHH-----HHhhhcCccccccchhhHHHHHHHH
Confidence 57899999999999999997 8888887521000 00000 00000 000000 1122221122 2234455
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec-
Q psy852 651 IRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA- 728 (891)
Q Consensus 651 L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s- 728 (891)
++..-...+.+..++.+++|+.|++.|.+. +|.++. -.+..+|...+.+. +-......+.|.+-|+..-.-+
T Consensus 302 ~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTdnHlvlvdl~~~-----g~~g~~ae~~Le~~gI~~Nkn~i 375 (470)
T d1rv3a_ 302 LKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSK-----GTDGGRAEKVLEACSIACNKNTC 375 (470)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGG-----TCCHHHHHHHHHHTTEECEEECC
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCCceEEEeeccc-----CCcHHHHHHHHHHcCcEECCCcC
Confidence 565556678899999999999999999984 888874 45667777777643 2234455666777887632111
Q ss_pred -----cccCCeEEEE----ecCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q psy852 729 -----SQEQNDEVFE----LQERKRKDDLAYKRSFFVRMLGLVCFRLR 767 (891)
Q Consensus 729 -----~~~g~~~l~s----v~~~tT~edId~li~~L~ei~~~~~~~l~ 767 (891)
.....++.+. +.+...++|+.++.+.|.+++.+..+...
T Consensus 376 P~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~~~~~~~~ 423 (470)
T d1rv3a_ 376 PGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQD 423 (470)
T ss_dssp SSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1111233355 45678999999999999988865544333
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=97.72 E-value=0.0017 Score=69.86 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=67.3
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-+.......+...+.+++.++.+. ++.+|+++|++.+++.. .+++.+-.+|.||.+-+ +++|+
T Consensus 116 ~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~------~~~~~~~P~NPTG~~~~~~~~~~l~ 189 (388)
T d1j32a_ 116 EVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKT------KLLVFNTPSNPTGMVYTPDEVRAIA 189 (388)
T ss_dssp EEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCC------eEEEECCCCCCCCcccchhhhhhhh
Confidence 366666677777777777677888888764 35799999999886542 35566667999999866 56777
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|++++++|.+|-+|+.+
T Consensus 190 ~~~~~~~~~iI~De~Y~~~ 208 (388)
T d1j32a_ 190 QVAVEAGLWVLSDEIYEKI 208 (388)
T ss_dssp HHHHHHTCEEEEECTTTTC
T ss_pred cccccCCeEEEchhhhhcc
Confidence 7899999999999999543
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=97.69 E-value=0.00087 Score=73.18 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=76.7
Q ss_pred EEecCCCChHHHHHHH-HcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAM-MAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~-~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
|++..-.+......+. .++.+++.|+++++ ..+|++++++.+++..+.+..+.+++.+--+|.||.+-+ +.+|+
T Consensus 136 Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~ 215 (431)
T d1m7ya_ 136 VLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLL 215 (431)
T ss_dssp EEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCcccccccccccccccccc
Confidence 6666666767777664 46788999998754 579999999999988888888888889999999998865 77888
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|++++++|.+|-+|+.+.
T Consensus 216 ~~a~~~~~~vI~De~Y~~~~ 235 (431)
T d1m7ya_ 216 SFVEDKGIHLISDEIYSGTA 235 (431)
T ss_dssp HHHHHHTCEEEEECTTGGGC
T ss_pred ccccccCcceeecccccccc
Confidence 89999999999999996543
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=97.65 E-value=8.4e-05 Score=79.36 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=68.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC---CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD---DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d---~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I 217 (891)
.|+++.-+|......+...+.+++.++++ +.+.+|++.|++.+++.. .+++.+.-+|.||.+-+ +++|
T Consensus 104 ~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~~~~p~NPtG~~~~~~~l~~l 177 (368)
T d1v2da_ 104 EVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRT------RALLLNTPMNPTGLVFGERELEAI 177 (368)
T ss_dssp EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTE------EEEEEESSCTTTCCCCCHHHHHHH
T ss_pred cccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhccCc------eEEEEcCCCCcccccCCHHHHHHH
Confidence 36666667777777777777788777764 457799999999887653 35666777999999977 7788
Q ss_pred HHHHHHcCCceeeeccccC
Q psy852 218 GPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG 236 (891)
+++|+++++++++|.+++.
T Consensus 178 ~~~a~~~~i~ii~D~~~~~ 196 (368)
T d1v2da_ 178 ARLARAHDLFLISDEVYDE 196 (368)
T ss_dssp HHHHHHTTCEEEEECTTTT
T ss_pred HHHHHHcCCeeeechhhhh
Confidence 8999999999999999854
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=97.61 E-value=0.00046 Score=75.05 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=65.6
Q ss_pred EEEecCCCChHHHHHHH-H---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM-M---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++........+-+. . .|+.+.+++. -|++++++++++.+ -+|.+-.-+|.+.-+.||+.|++
T Consensus 100 ~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~-----~d~~~~~~ai~~~t------~lv~~Esp~NP~l~v~Di~~i~~ 168 (392)
T d1gc0a_ 100 EVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-----ADLQALEAAMTPAT------RVIYFESPANPNMHMADIAGVAK 168 (392)
T ss_dssp EEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-----TCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred eeecccccchhhhhhhhhhhccCCcccccCCc-----cCHHHHHHhCCCCC------eEEEecccccceeeecchHHHHH
Confidence 47787777777666652 2 3677877754 36899999988764 48888888999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+.+.||.+|+
T Consensus 169 ia~~~g~~~vvDnT~a 184 (392)
T d1gc0a_ 169 IARKHGATVVVDNTYC 184 (392)
T ss_dssp HHGGGTCEEEEECTTT
T ss_pred HHHhcCCEEEEecCcc
Confidence 9999999999999994
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.52 E-value=0.0018 Score=69.86 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=67.6
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~ 219 (891)
|++.+-+.......+...|.+++.+++++ +...++++|++.+.... .+++.+-.+|.||.+ +.+.+|++
T Consensus 128 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~------~~~~l~np~NPtG~~~~~~~~~~i~~ 201 (412)
T d1bw0a_ 128 ALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKT------KLLIVTNPSNPCGSNFSRKHVEDIVR 201 (412)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred eeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhhccc------cccccccccccccccchhhhcccccc
Confidence 55655566666667777888999999875 45789999988765543 477778889999998 55667888
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|++++++|.+|-+|+.+
T Consensus 202 ~~~~~~~~vi~De~Y~~~ 219 (412)
T d1bw0a_ 202 LAEELRLPLFSDEIYAGM 219 (412)
T ss_dssp HHHHHTCCEEEECTTTTC
T ss_pred ccccCCeeeechhhHHHh
Confidence 889999999999999544
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=97.50 E-value=0.0026 Score=69.02 Aligned_cols=84 Identities=11% Similarity=0.181 Sum_probs=67.0
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...+....+-+. -.|+++..++.+ |++.+++++++.+ -+|-+=.-+|.+.-+-||++|++
T Consensus 104 ~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~-----d~~~~~~~i~~~T------klv~~Esp~NP~l~v~Di~~i~~ 172 (397)
T d1y4ia1 104 HIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG-----KPEEIRAAMRPET------KVVYIETPANPTLSLVDIETVAG 172 (397)
T ss_dssp EEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred eeeeecccccccchhhhcccCCCceEeeccCCC-----CHHHHHHhcCCCC------cEEEecCCcccceeecccHHHHH
Confidence 47888887777766552 247788888643 6899999987654 47777778899999999999999
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|+++.||.+|+..+
T Consensus 173 iA~~~gi~~vvDnT~atP~ 191 (397)
T d1y4ia1 173 IAHQQGALLVVDNTFMSPY 191 (397)
T ss_dssp HHHHTTCEEEEECTTTCTT
T ss_pred HhhcCCceEEecCcccCcc
Confidence 9999999999999995433
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.0017 Score=70.35 Aligned_cols=250 Identities=8% Similarity=-0.001 Sum_probs=136.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
.|+ +|+|+++++..++.+.- .+.-.|++..-.+......+...|++++.+|.+++ .+|
T Consensus 106 ~I~--it~G~~~al~~~~~~~~-------------------~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~-~~~ 163 (420)
T d1vp4a_ 106 NLI--FTVGSQQALDLIGKLFL-------------------DDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-GMD 163 (420)
T ss_dssp GEE--EEEHHHHHHHHHHHHHC-------------------CTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-EEC
T ss_pred HeE--eccchhhhHHHHHHhhh-------------------ccccccccccccccchhHHHHHHhhhccccccccc-ccc
Confidence 556 67888888876665421 11224666667777777778888999999999765 489
Q ss_pred HHHHHHHHHhhhhcCCc----cEEEEe----cCCccc-----------hhhh--------------hcC----------C
Q psy852 543 GATLRQVMQQDETMGYI----PFFVST----TLGTTS-----------CYRK--------------SQG----------I 579 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~i----p~~Vva----taGTT~-----------c~~~--------------ldG----------i 579 (891)
++.++..+.+....... .++++. ..|++. |.++ .++ .
T Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~ 243 (420)
T d1vp4a_ 164 LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG 243 (420)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC
T ss_pred cchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccccccccccc
Confidence 99999888764433322 233332 345543 3321 011 0
Q ss_pred CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh--
Q psy852 580 EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS-- 657 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~-- 657 (891)
...-.+.-+..|+++.-.-+|+++. +++.+.........+ +. ....+.++.+...+...
T Consensus 244 ~~~~i~~~s~sk~~~~G~RiG~~~~-~~~~i~~l~~~~~~~--------------~~----~~~~~~q~~~a~~l~~~~~ 304 (420)
T d1vp4a_ 244 PERVVLLNTFSKVLAPGLRIGMVAG-SKEFIRKIVQAKQSA--------------DL----CSPAITHRLAARYLERYDL 304 (420)
T ss_dssp TTTEEEEEESTTTTCGGGCEEEEEC-CHHHHHHHHHHHHHH--------------HS----SCCHHHHHHHHHHHHHSCH
T ss_pred ccceeEEeccccccccccccccccc-cchhhhhhhhhhhhc--------------cc----cCchhhhhhhhhhcccccc
Confidence 1122344457887764466787655 333222211110000 00 01112222222222221
Q ss_pred --hHHHHHHH----HHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-
Q psy852 658 --GLQKYIRR----HCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ- 730 (891)
Q Consensus 658 --G~~~~i~~----~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~- 730 (891)
-+++..+. ...+.+.|.+.+.+.+++++..+.....++++++.. ....++.+.|.+.|++++-++..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~------~d~~~~~~~l~~~gV~v~PG~~F~ 378 (420)
T d1vp4a_ 305 LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEG------FDTWEMFEYAKRKKVFYVPGRVFK 378 (420)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTT------CCTTTTHHHHHHHTEECEEGGGGC
T ss_pred cccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCC------CCHHHHHHHHHHCCeEEEechhhC
Confidence 12222222 233444455555667889887555555777887532 12335667788899886655433
Q ss_pred ---cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 ---EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 ---~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+...+ +++.. .+++++++.++.|+++++
T Consensus 379 ~~~~~~~~iRls~~~-~~~e~l~~a~~rL~~~l~ 411 (420)
T d1vp4a_ 379 VYDEPSPSMRLSFCL-PPDEKIVEGIKRLREVVL 411 (420)
T ss_dssp TTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEeCc-CCHHHHHHHHHHHHHHHH
Confidence 223466 88753 477888888888777663
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00021 Score=76.39 Aligned_cols=281 Identities=10% Similarity=0.032 Sum_probs=170.6
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH--HcCc
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM--MAFV 528 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~--l~gv 528 (891)
.+++.+..-+..+|+ +++|||+++..++... . .++-.+++....|++..-... ..+.
T Consensus 60 ~l~~llg~~~~~~ii--~~gsgT~a~~~~i~~l----~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (388)
T d1h0ca_ 60 GIQYVFQTRNPLTLV--ISGSGHCALEAALVNV----L---------------EPGDSFLVGANGIWGQRAVDIGERIGA 118 (388)
T ss_dssp HHHHHHTCCCSEEEE--ESSCHHHHHHHHHHHH----C---------------CSSCCEEECBSSHHHHHHHHHHHHHC-
T ss_pred HHHHHhCCCCCcEEE--EcCcHHHHHHHHHHHh----h---------------ccCCceeeecccceeeeeccccccccc
Confidence 555555554566777 7889999887766542 1 112235566667776544332 3566
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC------------CCc
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI------------EYA 582 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi------------~~a 582 (891)
....++.+..+..|.+.+++.+...... .+ ...+.+..|+.. |++ ++|++ -.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~ 197 (388)
T d1h0ca_ 119 RVHPMTKDPGGHYTLQEVEEGLAQHKPV-LLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGI 197 (388)
T ss_dssp -CBCCBCCTTCCCCHHHHHHHHHHHCCS-EEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTC
T ss_pred cccccccCCccccchHHHHHHhccCCcc-eEEEeeeeeccccccCHHHHHHHhhcccccceecccccccccccccccccc
Confidence 7777888888999999998887764221 11 122234455544 443 34543 247
Q ss_pred cEEEEcCcccCCcccccEEEEEeCCccchhhhc----cCCCccccCCCCCcc--ccCCcc-ccccccc-chHHHHHHHHH
Q psy852 583 DSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV----VDPLYLQHGHEGAID--YRHWGI-PLSRRFR-SLKLWFVIRTY 654 (891)
Q Consensus 583 DSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~----~~~~Yl~~~~e~~~~--~~~~ti-~~SRr~~-aL~lW~~L~~l 654 (891)
|.+.+++|||+++|.|+|+++++.... ..... ....|+......... ...... ..+-.+. ...+..++..+
T Consensus 198 D~~~~s~~K~~~gp~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~ 276 (388)
T d1h0ca_ 198 DILYSGSQKALNAPPGTSLISFSDKAK-KKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALI 276 (388)
T ss_dssp SEEEEESSSTTCCCTTCEEEEECHHHH-HHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHH
T ss_pred ceecccccccccCCCceEEEeecHHHH-HhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHH
Confidence 999999999999999999999886531 11111 111121100000000 000000 0111111 23455566666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeeccc
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQ 730 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~ 730 (891)
-..|+..+.++..++++++.+.++......+..++. .++++|+++. +...+.+...|.+ .|+.+..+...
T Consensus 277 ~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~------~~~~~~~~~~L~~~~gI~v~~G~~~ 350 (388)
T d1h0ca_ 277 AEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPA------GYDWRDIVSYVIDHFDIEIMGGLGP 350 (388)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCT------TCCHHHHHHHHHHHHCEECEECCGG
T ss_pred HHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCC------CCCHHHHHHHHHhcCCEEEeCCchh
Confidence 777888888999999999999998864333333332 3689999852 1245677778755 48776555554
Q ss_pred cCCeEE-EE-ecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FE-LQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 ~g~~~l-~s-v~~~tT~edId~li~~L~ei~~ 760 (891)
....++ |+ +++++|.+|||+++++|+++++
T Consensus 351 ~~~~~iRis~~g~~~t~edid~li~aL~~~L~ 382 (388)
T d1h0ca_ 351 STGKVLRIGLLGCNATRENVDRVTEALRAALQ 382 (388)
T ss_dssp GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455567 99 7888999999999999999884
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=97.43 E-value=0.0044 Score=67.29 Aligned_cols=259 Identities=8% Similarity=-0.015 Sum_probs=141.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH-cCceEEEecCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM-AFVRLKILEPDD--KN 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l-~gv~v~~Vp~d~--~G 539 (891)
+|+ +|.|+++++..++.+.- .+.-.|++..-.+.+....+.+ .|++++.|+++. ++
T Consensus 110 ~Iv--it~G~~~al~~~~~~l~-------------------~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~ 168 (428)
T d1iaya_ 110 RVV--MAGGATGANETIIFCLA-------------------DPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNF 168 (428)
T ss_dssp SCE--EEEHHHHHHHHHHHHHC-------------------CTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTT
T ss_pred hEE--EcCCHHHHHHHHHHHhC-------------------CCCCEEEEccCCchHHHHHHHHhcCCeEEEeeccccccc
Confidence 455 67788888887765421 1122466677777777777764 588999999864 56
Q ss_pred CcCHHHHHHHHHhhhhcCCcc-EEEEe----cCCccc-----------hhhh-----h---------cCCCC--------
Q psy852 540 SLRGATLRQVMQQDETMGYIP-FFVST----TLGTTS-----------CYRK-----S---------QGIEY-------- 581 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip-~~Vva----taGTT~-----------c~~~-----l---------dGi~~-------- 581 (891)
.+|+++++++++.....+..+ ++++. -.|++. |.+| . ++-+.
T Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~ 248 (428)
T d1iaya_ 169 KITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILD 248 (428)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHT
T ss_pred ccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccc
Confidence 899999999887655444433 33332 245543 3321 1 11000
Q ss_pred ----------ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHH
Q psy852 582 ----------ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFV 650 (891)
Q Consensus 582 ----------aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~ 650 (891)
-..+..+..|.++.| .-+|+++..++.. ...+.....+ ....+-...++.....
T Consensus 249 ~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l-~~~~~~~~~~--------------~~~~~~~~~~~~a~l~ 313 (428)
T d1iaya_ 249 EQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDV-VNCARKMSSF--------------GLVSTQTQYFLAAMLS 313 (428)
T ss_dssp SGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHH-HHHHHHHHTT--------------SCCCHHHHHHHHHHTT
T ss_pred hhhccccccceEEEEecCCCcccCCCcccccccccccch-hhhhhhhhcc--------------cccccccccchhhhhh
Confidence 024677899977666 5688877655432 2222111010 0000000001111011
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeecc
Q psy852 651 IRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPAS 729 (891)
Q Consensus 651 L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~ 729 (891)
....-.+-+++..+...+..+.+.+.|+. .++++..+....-+++++.+...........++.++|.+ .|+++.-+..
T Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~~~~~L~~-~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~ 392 (428)
T d1iaya_ 314 DEKFVDNFLRESAMRLGKRHKHFTNGLEV-VGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSS 392 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred hhccccccccccccccchhHHHHHHHHHh-CCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchh
Confidence 11111222344444556667778888876 578776544444567777543211111223456777754 5877554443
Q ss_pred --ccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 730 --QEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 730 --~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+..++ +++. ..++++|+..++.|++.+
T Consensus 393 F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l 424 (428)
T d1iaya_ 393 FECQEPGWFRVCFA-NMDDGTVDIALARIRRFV 424 (428)
T ss_dssp GTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHH
Confidence 3445667 8875 346778998888888766
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.43 E-value=0.00031 Score=75.23 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=69.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~ 218 (891)
.|++..-++......+...|.+++.++.++ +..+|+++|++.+++. +.+++++..+|.||.+- .+.+|+
T Consensus 112 ~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NPtG~~~s~~~~~~l~ 185 (388)
T d1gdea_ 112 EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGAVLTKKDLEEIA 185 (388)
T ss_dssp EEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccC------CeEEEECCCcCCCCCcCCHHHHHHHH
Confidence 366666677777777777788999999864 4579999999887654 34666677789999995 577788
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|++++++|..|-+|+.+
T Consensus 186 ~~a~~~~~~vi~De~y~~~ 204 (388)
T d1gdea_ 186 DFVVEHDLIVISDEVYEHF 204 (388)
T ss_dssp HHHHHTTCEEEEECTTTTC
T ss_pred HHHHHcCCEEEEEcCChhh
Confidence 8999999999999999654
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=97.40 E-value=0.00094 Score=70.90 Aligned_cols=242 Identities=10% Similarity=0.050 Sum_probs=135.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC---CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD---DKN 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d---~~G 539 (891)
+|+ ++.|+++++..++.+.-. +.-.|+++.-.|......+...+.+++.++.+ .++
T Consensus 80 ~Ii--it~G~~~al~~~~~~l~~-------------------~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 138 (368)
T d1v2da_ 80 SVV--VTSGATEALYVLLQSLVG-------------------PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGF 138 (368)
T ss_dssp GEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEE
T ss_pred cee--eccchHHHHHHHhhcccc-------------------ccccccccCCcchhhhhHHHhcCCccceeccccccccc
Confidence 666 788999998877655211 12246666667777777888888887777663 457
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcC-----------------CCCcc
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQG-----------------IEYAD 583 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldG-----------------i~~aD 583 (891)
.+|++.|++++.+... .++++ +-.|++. |.++ .|. .....
T Consensus 139 ~~d~~~l~~~~~~~~~----~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~ 214 (368)
T d1v2da_ 139 RLDLSALEKALTPRTR----ALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERT 214 (368)
T ss_dssp ECCHHHHHTTCCTTEE----EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTE
T ss_pred cCCHHHHHHhhccCce----EEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccccccccccc
Confidence 8999999999876422 22333 2345554 2221 111 11123
Q ss_pred EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh-hHHH
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS-GLQK 661 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~-G~~~ 661 (891)
.+..+..|..+.| .-+|++...++ .+.........+ ....+.... ...-.++...... -+++
T Consensus 215 ~~~~~~sk~~~~~G~R~g~~~~~~~-~~~~~~~~~~~~--------------~~~~~~~~q-~~~~~~l~~~~~~~~~~~ 278 (368)
T d1v2da_ 215 FTVGSAGKRLEATGYRVGWIVGPKE-FMPRLAGMRQWT--------------SFSAPTPLQ-AGVAEALKLARREGFYEA 278 (368)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCTT-THHHHHHHHHHH--------------TSSCCHHHH-HHHHHHHHHHHHTTHHHH
T ss_pred ceeeccccccccccccccccccccc-ccchhhhhhhcc--------------ccccccccc-cccccccccccchhhHHH
Confidence 3445555555555 44676654433 221111000000 000011111 1111222222222 3455
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc----cCCeEE-
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ----EQNDEV- 736 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~----~g~~~l- 736 (891)
..+...+.++++.+.|++. ++++..+.....+++++++. .. .+.|.+.|+++..++.. .+...+
T Consensus 279 ~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~~~~~~l~~~-------~~---~~ll~~~gI~v~pg~~F~~~~~~~~~iR 347 (368)
T d1v2da_ 279 LREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW-------DA---FRLVEEARVALIPASAFYLEDPPKDLFR 347 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC-------CH---HHHHHHTCEECEEGGGGCSSSCCTTEEE
T ss_pred HHHHHHHhhhhhhhhHHhc-CcEEecCCceeEEEEeCCcc-------HH---HHHHHhCCEEEEechhhCCCCCCCCEEE
Confidence 5555677888899999886 78887665566778888643 12 23466789876544432 234566
Q ss_pred EEecCCCCHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei 758 (891)
+++. +++++|+++++.|+++
T Consensus 348 is~~--~~~e~i~~ai~rL~~~ 367 (368)
T d1v2da_ 348 FAFC--KTEEELHLALERLGRV 367 (368)
T ss_dssp EECC--SCHHHHHHHHHHHHHH
T ss_pred EEec--CCHHHHHHHHHHHHHh
Confidence 8875 4789999999988875
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.0039 Score=65.69 Aligned_cols=249 Identities=12% Similarity=0.004 Sum_probs=130.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC---CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD---DKN 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d---~~G 539 (891)
+|+ +|.|+++++..++.+. ..+.-.|++..-.|......+.+.+.+++.++.+ +++
T Consensus 60 ~i~--it~G~~~~l~~~~~~l-------------------~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 118 (361)
T d1d2fa_ 60 TVV--YGPSVIYMVSELIRQW-------------------SETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGW 118 (361)
T ss_dssp GEE--EESCHHHHHHHHHHHS-------------------SCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSE
T ss_pred eEE--EeCCHHHHHHHHhhhc-------------------cccccccccccccccchhHHHHhhcceEEeeccccccccc
Confidence 566 7788888876555442 1112246666777888888888888888888764 445
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEEe----cCCccc-----------hhhh-----hcC-----------------CCC-
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVST----TLGTTS-----------CYRK-----SQG-----------------IEY- 581 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vva----taGTT~-----------c~~~-----ldG-----------------i~~- 581 (891)
.+|++.+++.+.+.. .-+++.. -.|++. |.++ .|. ...
T Consensus 119 ~~d~~~~~~~~~~~~----~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~ 194 (361)
T d1d2fa_ 119 FCDMGKLEAVLAKPE----CKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARG 194 (361)
T ss_dssp ECCHHHHHHHHTSTT----EEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCS
T ss_pred ccccccchhhcccCC----ceeEEecccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccccccccccccc
Confidence 799999999886532 2233332 345544 3221 111 111
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCcccccccccchHH-HHHHHHHHHhh
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL-WFVIRTYGLSG 658 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l-W~~L~~lG~~G 658 (891)
-.-+..+..|..+.| ..+|++++.+.......+.. ...+ +. .+-...++.. +..+. ....-
T Consensus 195 ~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~a~~~~~~-~~~~~ 258 (361)
T d1d2fa_ 195 DWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRD--------------GL-SSPSVLALTAHIAAYQ-QGAPW 258 (361)
T ss_dssp SEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTS--------------CC-CSCCHHHHHHHHHHHH-HCHHH
T ss_pred ccccccccccccccccccceeeecchhHHHHHHhhhccccc--------------cc-ccchhhhHHHHHHHhh-ccchh
Confidence 123445566755544 46777766554322221110 0000 00 0000111111 11111 22233
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeecc--ccCCe
Q psy852 659 LQKYIRRHCELAKLFEGKVRR-DPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPAS--QEQND 734 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~--~~g~~ 734 (891)
+++......+.++.+.+.+.+ .+++.+..+.....+.+++.+. +....++..+|.+ .|+.++-+.. ..+..
T Consensus 259 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~-----~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~ 333 (361)
T d1d2fa_ 259 LDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPL-----NIDDNALQKALIEQEKVAIMPGYTYGEEGRG 333 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGG-----CCCHHHHHHHHHHTTCEECEEGGGGCGGGTT
T ss_pred hhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCC-----CCCHHHHHHHHHHhCCEEEEeccccCCCCCC
Confidence 344444445555566665543 3555554333333555566533 2345678888765 4887553333 23455
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
++ +|+. ++++++++.++.|.+.+
T Consensus 334 ~vRis~~--~~~e~l~~al~rl~~~l 357 (361)
T d1d2fa_ 334 FVRLNAG--CPRSKLEKGVAGLINAI 357 (361)
T ss_dssp EEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred EEEEEEc--CCHHHHHHHHHHHHHHH
Confidence 66 8874 57888888888887766
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.31 E-value=0.0011 Score=70.76 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=74.8
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEec-ccchHHHHHHHHHcCce
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCS-KEAHSCVEKAAMMAFVR 529 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S-~~aH~Sv~Kaa~l~gv~ 529 (891)
...+.+...+.-.++ ++.|++++++.++.+.. .+.-+|+.+ ..+|.++..++++.|++
T Consensus 58 ~~~~~~~~~~~e~~~--~~~~~~~a~~~~l~al~-------------------~~~~vi~~~~~~~~~~~~~~~~l~g~~ 116 (366)
T d2aeua1 58 YGLKHLGGDENDKCV--GFNRTSSAILATILALK-------------------PKKVIHYLPELPGHPSIERSCKIVNAK 116 (366)
T ss_dssp HHHHHHTCCTTEEEE--EESSHHHHHHHHHHHHC-------------------CSEEEEECSSSSCCTHHHHHHHHTTCE
T ss_pred HHHHHccCCCccEEE--EeCCHHHHHHHHHHHhC-------------------CCCEEEEecCCCcchhHHHHHHhcCCe
Confidence 344555554544555 56788999987776521 122345554 46899999999998876
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCC-ccc-----------hhhh-----hcCC-------------
Q psy852 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG-TTS-----------CYRK-----SQGI------------- 579 (891)
Q Consensus 530 v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataG-TT~-----------c~~~-----ldGi------------- 579 (891)
++ +.+ |+++|+++|++.++ .++++.... ++. |+++ +|.+
T Consensus 117 ~v--~~~-----d~e~l~~~i~~~tk----~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~ 185 (366)
T d2aeua1 117 YF--ESD-----KVGEILNKIDKDTL----VIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPP 185 (366)
T ss_dssp EE--EES-----CHHHHHTTCCTTEE----EEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCC
T ss_pred EE--CCC-----CHHHHHHhcCCCce----EEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCC
Confidence 53 332 68888888776432 223322211 221 3221 1111
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCC
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADR 607 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~ 607 (891)
..+|-+++|.||.+++| ..|+++.+++
T Consensus 186 ~~~~~~di~~~S~sK~~~g~-~~G~i~~~~~ 215 (366)
T d2aeua1 186 ALKLGADLVVTSTDKLMEGP-RGGLLAGKKE 215 (366)
T ss_dssp HHHHTCSEEEEETTSSSSSC-SCEEEEEEHH
T ss_pred HhhcCceEEEeccccccccc-ceeEEEecHH
Confidence 24799999999988866 5687777654
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=97.29 E-value=0.0025 Score=68.46 Aligned_cols=246 Identities=11% Similarity=0.060 Sum_probs=142.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
+|+ +|+|+++++..++.+. . .+.-.|++..-........+...+.+++.+|.+ .++.
T Consensus 92 ~i~--it~G~~~al~~~~~~~----~---------------~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (388)
T d1j32a_ 92 NIL--VTNGGKQSIFNLMLAM----I---------------EPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFK 150 (388)
T ss_dssp GEE--EESHHHHHHHHHHHHH----C---------------CTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTC
T ss_pred eEE--EcCCHHHHHHHHHHHH----h---------------CCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccC
Confidence 455 6788888888776442 1 112246666666667777777778888888875 3467
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCCC------Cc----
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGIE------YA---- 582 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi~------~a---- 582 (891)
+|+++|++++++.. ..++++ +-.|++. |.++ .++-+ ..
T Consensus 151 ~d~~~l~~~~~~~~----~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~ 226 (388)
T d1j32a_ 151 VSPEQIRQAITPKT----KLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAY 226 (388)
T ss_dssp CCHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred CCHHHHHHhCCCCC----eEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccc
Confidence 99999999887532 123333 2345543 3321 11100 00
Q ss_pred --cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHh
Q psy852 583 --DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLS 657 (891)
Q Consensus 583 --DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~ 657 (891)
.-+..+.+|.++.| .=+|+++..+. .+....... .+. .-......++++...+ +.+
T Consensus 227 ~~~i~~~S~SK~~~~~GlRvG~~~~~~~-~~~~~~~~~-~~~-----------------~~~~~~~~q~a~~~~~~~~~~ 287 (388)
T d1j32a_ 227 ERSVVCSGFAKTYAMTGWRVGFLAGPVP-LVKAATKIQ-GHS-----------------TSNVCTFAQYGAIAAYENSQD 287 (388)
T ss_dssp HTEEEEEESTTTTTCTTTCCEEEECCHH-HHHHHHHHH-HTT-----------------TCSCCHHHHHHHHHHHHSCSH
T ss_pred cceeEecCChhhhhcchhHeEEEEECHH-HHHHHHHhh-hhc-----------------cccccHHHHHHHhhcccchHH
Confidence 12455688988766 45787765322 222111100 000 0001122333333333 345
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccccCCeEE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g~~~l 736 (891)
-+++..+...+..+.+.+.|++.+++++..+.....++.++... .....++.++|. +.|+.++.++.......+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~~-----~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~ 362 (388)
T d1j32a_ 288 CVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKT-----GRSSLDFCSELLDQHQVATVPGAAFGADDCI 362 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGG-----TCCHHHHHHHHHHHHCEECEEGGGGTCTTBE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECCCC-----CCCHHHHHHHHHHhCCEEEEeccccCCCCeE
Confidence 57777777788899999999998888875443333444444322 223446666664 568887666665555667
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++. ++++++++.++.|++.+
T Consensus 363 Rls~~--~~~e~l~~al~rl~~~l 384 (388)
T d1j32a_ 363 RLSYA--TDLDTIKRGMERLEKFL 384 (388)
T ss_dssp EEECC--SCHHHHHHHHHHHHHHH
T ss_pred EEEEe--CCHHHHHHHHHHHHHHH
Confidence 8875 57888888888887765
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.29 E-value=0.0041 Score=68.25 Aligned_cols=218 Identities=10% Similarity=0.054 Sum_probs=130.1
Q ss_pred eEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------hhh----------hhcC--------
Q psy852 529 RLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------CYR----------KSQG-------- 578 (891)
Q Consensus 529 ~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c~~----------~ldG-------- 578 (891)
+....++| +++.+|.+.+++..++. .|-+|++..-... |.+ |+.|
T Consensus 150 ~~~~Y~~d~~~~~IDyd~~~~~a~~~-----kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~ 224 (463)
T d2a7va1 150 ESMPYKLNPKTGLIDYNQLALTARLF-----RPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP 224 (463)
T ss_dssp ----CCBCTTTCSBCHHHHHHHHHHH-----CCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC
T ss_pred eeeeeeccCCCCcCcHHHHHHHHhhc-----CCceEEecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhc
Confidence 45556666 56999999999999874 2555554333222 221 3322
Q ss_pred --CCCccEEEEcCcccCCcccccEEEEEeCCccchh-hhc--cCCCccccCCCCCcccc-CCccccccccc-chHHHHHH
Q psy852 579 --IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS-ALV--VDPLYLQHGHEGAIDYR-HWGIPLSRRFR-SLKLWFVI 651 (891)
Q Consensus 579 --i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~-~l~--~~~~Yl~~~~e~~~~~~-~~ti~~SRr~~-aL~lW~~L 651 (891)
++++|.+|.+-||.|-+|-| |++++++...-.. ... ....|-. ..+.. -.+++++--.. ..++..++
T Consensus 225 sP~~~aDvvt~tTHKTlrGPrg-GiIl~~~~~~~~~~~~~~~~~~~~~~-----~i~~avFPg~qggph~h~iAa~Ava~ 298 (463)
T d2a7va1 225 SPFKHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFED-----RINFAVFPSLQGGPHNHAIAAVAVAL 298 (463)
T ss_dssp CGGGTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHH-----HHHHHHTTTTCCSCCHHHHHHHHHHH
T ss_pred ChhhhhhhhhchhhhhhcCCCc-eEEEEcccccccccccCccchhHHHH-----HhhhhcCcccchhhhhhhHHHHHHHH
Confidence 58899999999999999984 7788877521100 000 0000000 00000 01222222222 22344555
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec--
Q psy852 652 RTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA-- 728 (891)
Q Consensus 652 ~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s-- 728 (891)
+..-...+++..++.+++|+.|++.|.+. ++.+++. .+.++|.+.+.+. +-........|.+.|+..---+
T Consensus 299 ~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlvlvdl~~~-----~~~G~~ae~~Le~~gI~~Nkn~iP 372 (463)
T d2a7va1 299 KQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPK-----GLDGARAERVLELVSITANKNTCP 372 (463)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTT-----TCCHHHHHHHHHHTTEECEEECCT
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCCceeeeecccc-----CCCHHHHHHHHHhccCccCCccCC
Confidence 65566778899999999999999999884 8888753 5677888888654 2234566677888887622111
Q ss_pred ----cccCCeEEEE----ecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 729 ----SQEQNDEVFE----LQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 729 ----~~~g~~~l~s----v~~~tT~edId~li~~L~ei~~~~~ 763 (891)
...-.++.+. +.+...++|+.++.+.|.+++..-.
T Consensus 373 ~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~~~~ 415 (463)
T d2a7va1 373 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGL 415 (463)
T ss_dssp TCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 1111122355 4557899999999999988875443
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.29 E-value=0.00064 Score=71.58 Aligned_cols=284 Identities=10% Similarity=0.011 Sum_probs=152.4
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH-HHHcCce
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA-AMMAFVR 529 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka-a~l~gv~ 529 (891)
.+++.+...++.+++. +|+|+|+++..++...- ...+-+++++...+.+..-. +...+..
T Consensus 41 ~l~~l~~~~~~~~~i~-~t~s~T~~~~~~~~~l~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (361)
T d1m32a_ 41 QLTALATASEGYTSVL-LQGSGSYAVEAVLGSAL------------------GPQDKVLIVSNGAYGARMVEMAGLMGIA 101 (361)
T ss_dssp HHHHHHCSSSSEEEEE-EESCHHHHHHHHHHHSC------------------CTTCCEEEEESSHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCCCEEEE-ECCCHHHHHHHHHHHhh------------------hhccccceeeehhhhhhHHHHhhhhhcc
Confidence 6667777666644332 67888999876664321 01223455555544443333 3344555
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC------------CCcc
Q psy852 530 LKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI------------EYAD 583 (891)
Q Consensus 530 v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi------------~~aD 583 (891)
...+..+.....+.+..+.....+.....+ ...+....|... |++ .+|++ -.+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D 181 (361)
T d1m32a_ 102 HHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHID 181 (361)
T ss_dssp EEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCS
T ss_pred cccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccc
Confidence 455555444444444433333322111111 111223344443 444 24442 3489
Q ss_pred EEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC-CCccccCCccccccc-ccchHHHHHHHHHHHhhHH-
Q psy852 584 SFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE-GAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQ- 660 (891)
Q Consensus 584 SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e-~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~G~~- 660 (891)
.+++++|||+++|.|.|+++++++......-.....+...... ............+-. ...+.+..+++.+..+|..
T Consensus 182 ~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~ 261 (361)
T d1m32a_ 182 YLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVA 261 (361)
T ss_dssp EEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred eEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchh
Confidence 9999999999999999999999763221100000000000000 000000000001111 1234455566666566544
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
...++...+++.+.+.++.. ++.+..++. ..+++|..+.. ......++.+.|.+.|++...+....+ .++
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~~~p~~----~~~~~~~~~~~l~~~gi~i~~G~~~~~-~~~R 335 (361)
T d1m32a_ 262 ARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPED----PQYRFSEFYRRLKEQGFVIYPGKVSQS-DCFR 335 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCC----TTCCHHHHHHHHHHTTEECEECCCSSS-CEEE
T ss_pred hhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEEECCCC----CCCCHHHHHHHHHHCCcEEECCCcCCC-CEEE
Confidence 44456677788888888775 455544432 35778887432 133467889999999988555444434 455
Q ss_pred EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~ 759 (891)
|+...+++++|||+++++|+++.
T Consensus 336 is~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 336 IGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHc
Confidence 98666789999999999999763
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.0067 Score=65.43 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=63.6
Q ss_pred EEEecCCCChHHHHHHH-H---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM-M---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++.........-+. . .+..+..++. .|.+++++.+.+.++ +|.+=.-+|.+.-+-||++|++
T Consensus 91 ~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~-----~d~~~~~~~~~~~t~------~v~~EspsNP~l~v~Di~~i~~ 159 (384)
T d1cs1a_ 91 LLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ-----GDEQALRAALAEKPK------LVLVESPSNPLLRVVDIAKICH 159 (384)
T ss_dssp EEEEETTCCHHHHHHHHHHHTTTSCEEEEECT-----TCHHHHHHHHHTCCS------EEEEECSCTTTCCCCCHHHHHH
T ss_pred eecccccccchhhhhhhhhhcccccccccccC-----CCHHHHHhhcccccc------EEEEeccccccceeccHHHHhh
Confidence 47777777666655442 2 4556666653 367889988887653 7777788889999999999999
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++|+.+.||.+|+..
T Consensus 160 ia~~~g~~~vVDNT~atP 177 (384)
T d1cs1a_ 160 LAREVGAVSVVDNTFLSP 177 (384)
T ss_dssp HHHHTTCEEEEECTTTCT
T ss_pred hhhhcCcEEEEeccccCc
Confidence 999999999999999443
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=97.19 E-value=0.0021 Score=68.92 Aligned_cols=91 Identities=12% Similarity=0.068 Sum_probs=64.7
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhh-hcCCcceEEEeecccCccccccCH---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDE-TMGYIPFFVSTTLGTTSCCSFDNL---AEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~-~~g~~p~~V~~t~Gtt~~GavDpl---~~I~~i 220 (891)
|++..-+++.....+...+.+++.|+.++++.-. ..+........ +....+.+++.+.-+|.||.+-+. ++|+++
T Consensus 121 v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~ 199 (403)
T d1wsta1 121 IVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRV-DLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLEL 199 (403)
T ss_dssp EEEEESCCHHHHHHHHTTCCEEEEEEEETTEECH-HHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHH
T ss_pred cccCCCcchhhhHHHhhccccceeEeecccCCcc-ccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHH
Confidence 6666677888888888888899999988765422 22322222222 223345677788889999987555 578888
Q ss_pred HHHcCCceeeeccccC
Q psy852 221 AKEFDVWLHVDGAYAG 236 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG 236 (891)
|++|+++|..|-+|+.
T Consensus 200 a~~~~~~li~De~y~~ 215 (403)
T d1wsta1 200 ANEYDFLIVEDGPYSE 215 (403)
T ss_dssp HHHTTCEEEEECTTTT
T ss_pred HHhcCceeccccchhh
Confidence 9999999999999953
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.17 E-value=0.0032 Score=67.03 Aligned_cols=245 Identities=10% Similarity=0.034 Sum_probs=133.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ ++.|+++++..++.+. ..+.-.|++..-.+.....++...|.+++.+|.++ +..
T Consensus 88 ~i~--~t~G~~~~l~~~~~~l-------------------~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 146 (388)
T d1gdea_ 88 EIM--VLLGANQAFLMGLSAF-------------------LKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFR 146 (388)
T ss_dssp SEE--EESSTTHHHHHHHTTT-------------------CCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTC
T ss_pred eee--eccCcchHHHHHHHHh-------------------cCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCC
Confidence 455 5788888887665441 11223466666677788888888899999999853 458
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hc---------C--------CCC-cc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQ---------G--------IEY-AD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ld---------G--------i~~-aD 583 (891)
+|+++|++++.+.+ ..+++++ -.|++. |.++ .| + +.. .|
T Consensus 147 ~d~~~l~~~~~~~~----~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~ 222 (388)
T d1gdea_ 147 LNVDELKKYVTDKT----RALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFE 222 (388)
T ss_dssp CCHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGG
T ss_pred CCHHHHHHhCccCC----eEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCC
Confidence 99999999886532 2333332 356654 3221 01 1 111 12
Q ss_pred --EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH----
Q psy852 584 --SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL---- 656 (891)
Q Consensus 584 --SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~---- 656 (891)
-+.-+..|.++.| .-+|+++..++. +.......... .. ....+.++.....+..
T Consensus 223 ~~i~~~S~SK~~~~~GlR~G~ii~~~~~-~~~~~~~~~~~--------------~~----~~~~~~~~~~~~~l~~~~~~ 283 (388)
T d1gdea_ 223 RTITVNGFSKTFAMTGWRLGFVAAPSWI-IERMVKFQMYN--------------AT----CPVTFIQYAAAKALKDERSW 283 (388)
T ss_dssp GEEEEEESTTTTTCGGGCCEEEECCHHH-HHHHHHHHHTT--------------TC----SCCHHHHHHHHHHHTCHHHH
T ss_pred eEEEEeCChhhccCccccEEEEEeeccc-hhhhhhccccc--------------cc----cccccchhhHHHHHhhccch
Confidence 2344688988766 668887765431 11111000000 00 0011122222222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCC
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQN 733 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~ 733 (891)
.-+.+..++..+..+.+.+.|... +++...+.....++.++++. ....+++.++|. +.|+.++-++.. .+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~fl~~~l~~~-----~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~ 357 (388)
T d1gdea_ 284 KAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDT-----GLTSKKFSELMLKEARVAVVPGSAFGKAGE 357 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGG-----TCCHHHHHHHHHHHTCEECEEGGGGCGGGT
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhc-cccccCCCceEEEEEECCCC-----CCCHHHHHHHHHHhCCEEEEechhhCCCCC
Confidence 223344444455666677777664 34444333334555555432 223556777664 568776544432 334
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+ +++. +++++++++++.|++++
T Consensus 358 ~~iRis~~--~~~e~l~~al~rL~~~l 382 (388)
T d1gdea_ 358 GYVRISYA--TAYEKLEEAMDRMERVL 382 (388)
T ss_dssp TBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 456 8875 47788998888888765
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=97.16 E-value=0.0012 Score=70.61 Aligned_cols=87 Identities=11% Similarity=0.005 Sum_probs=66.1
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-........+...+.+++.|+.++ ...+|+++|++.+.+. +.+++.+--+|.||.+-+ +++|++
T Consensus 118 vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NPTG~~~s~~~~~~l~~ 191 (382)
T d1b5pa_ 118 VIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYPKEVLEALAR 191 (382)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCCCcchhCCHHHHHHHHH
Confidence 55555566666667777888999999764 3578999999877543 234555567899999955 667888
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|++++++|..|-+|+.+
T Consensus 192 ~~~~~~~~ii~De~y~~~ 209 (382)
T d1b5pa_ 192 LAVEHDFYLVSDEIYEHL 209 (382)
T ss_dssp HHHHTTCEEEEECTTTTC
T ss_pred HHHHcCeEEEEEccccce
Confidence 999999999999999644
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.15 E-value=0.0025 Score=68.81 Aligned_cols=84 Identities=10% Similarity=0.064 Sum_probs=66.0
Q ss_pred EEEecCCCChHHHHHHH-H---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM-M---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..-+....+-+. . .|+.+..++.+ |++++++++++.+ .+|.+-.-+|.+..+-||++|++
T Consensus 89 ~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~-----~~~~~~~ai~~~t------~li~~EtpsNP~l~v~Di~~i~~ 157 (380)
T d1ibja_ 89 EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQT------KLVWLESPTNPRQQISDIRKISE 157 (380)
T ss_dssp EEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCCSSE------EEEEECSSCTTTCCCCCHHHHHH
T ss_pred EEEEEecccccccchhhhhhccccccccccCcc-----hHHHHHHHhccCc------cEEEeccccccccccccHHHHHH
Confidence 47888888877776663 2 35677766532 5788888876553 58888889999999999999999
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|+++.||.+|++.+
T Consensus 158 iA~~~g~~~vVDnT~atP~ 176 (380)
T d1ibja_ 158 MAHAQGALVLVDNSIMSPV 176 (380)
T ss_dssp HHHTTTCEEEEECTTTCTT
T ss_pred HHHHcCCeEEeeccccccc
Confidence 9999999999999996544
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=97.15 E-value=0.0063 Score=63.99 Aligned_cols=142 Identities=9% Similarity=-0.030 Sum_probs=89.7
Q ss_pred EEEEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHH-HHhhHH
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY-GLSGLQ 660 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l-G~~G~~ 660 (891)
-+..+..|+++.| .=+|+++..+.. +...+. ....+ + ..++.+..+...+ ....+.
T Consensus 207 i~~~S~SK~~~l~GlR~G~~i~~~~~-~~~~~~~~~~~~--------------~------~~~~~~~~a~~~l~~~~~~~ 265 (355)
T d1lc5a_ 207 WVLRSLTKFYAIPGLRLGYLVNSDDA-AMARMRRQQMPW--------------S------VNALAALAGEVALQDSAWQQ 265 (355)
T ss_dssp EEEEESTTTTTCTTTCCEEEECCCHH-HHHHHHHHSCTT--------------C------SCHHHHHHHHHGGGCHHHHH
T ss_pred eeecccccccccccccccceeccchh-hhHHHHhhcCCc--------------c------ccccccccccccccccchhH
Confidence 5667899998866 557887765442 222221 11111 0 1122333333333 234566
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc--CCeEE-E
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--QNDEV-F 737 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--g~~~l-~ 737 (891)
+..++..+..+++.+.|.+.+++++. +...+-+++++.. ...++.++|.++|+++..++... +..++ |
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~--------~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRi 336 (355)
T d1lc5a_ 266 ATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER--------EDIDLQRRLLTQRILIRSCANYPGLDSRYYRV 336 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC--------TTCCHHHHHHTTTEECEECTTSTTCCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCC--------CHHHHHHHHHHCCcEEEeCccCCCCCCCEEEE
Confidence 66777788888999999999998864 4455667777742 22457788989998765554433 34567 9
Q ss_pred EecCCCCHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei 758 (891)
+++ +++|+++++++|+++
T Consensus 337 s~~---~~~e~~~li~aL~~i 354 (355)
T d1lc5a_ 337 AIR---SAAQNERLLAALRNV 354 (355)
T ss_dssp ECC---CHHHHHHHHHHHHHH
T ss_pred EeC---CHHHHHHHHHHHHHh
Confidence 875 789999999999876
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=97.14 E-value=0.031 Score=60.38 Aligned_cols=258 Identities=11% Similarity=0.010 Sum_probs=140.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH-cCceEEEecCCCC--C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM-AFVRLKILEPDDK--N 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l-~gv~v~~Vp~d~~--G 539 (891)
.|+ +|.|+++++..++.+.-+ +.-.|++..-.+......+.+ .|++++.|+.+++ .
T Consensus 111 ~I~--it~G~~~al~~~~~~l~~-------------------pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~ 169 (431)
T d1m7ya_ 111 HLV--LTAGATSANETFIFCLAD-------------------PGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGF 169 (431)
T ss_dssp GEE--EEEHHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTS
T ss_pred eEE--ECCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcc
Confidence 455 678889998877765311 112356666666666666654 6789999998643 6
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE--e---cCCccc-----------hhhh-----hcCC---------C---------
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS--T---TLGTTS-----------CYRK-----SQGI---------E--------- 580 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv--a---taGTT~-----------c~~~-----ldGi---------~--------- 580 (891)
.+|++++++++++..+.+..+.+++ + -.|++. |.++ .|.+ .
T Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~ 249 (431)
T d1m7ya_ 170 QITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLK 249 (431)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTT
T ss_pred cccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhh
Confidence 7999999999988666654433332 2 245443 3221 1110 0
Q ss_pred --Cc---------cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc-cchHH
Q psy852 581 --YA---------DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKL 647 (891)
Q Consensus 581 --~a---------DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~-~aL~l 647 (891)
.. --+..+..|.++.| .=+|+++..++. +.........+. . .+... .++..
T Consensus 250 ~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~-i~~~~~~~~~~~--------------~-~~~~~~~~~~a 313 (431)
T d1m7ya_ 250 DRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDM-VVAAATKMSSFG--------------L-VSSQTQHLLSA 313 (431)
T ss_dssp TTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHH-HHHHHHHHGGGS--------------C-CCHHHHHHHHH
T ss_pred hcccccccccCceEEEEecCcccccCCCCccceeccchhh-hHHHHHHHhccc--------------c-ccccccchhhh
Confidence 00 13455789998877 457877765432 222111100110 0 00011 11111
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEe
Q psy852 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMV 726 (891)
Q Consensus 648 W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s 726 (891)
+..-.....+-+.+..++..+..+.+.+.|++ .++++..+.....++.+++............++.++|.+ .|+.+.-
T Consensus 314 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~P 392 (431)
T d1m7ya_ 314 MLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-SGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISP 392 (431)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEE
T ss_pred hhccchhhhhhhhhhhhhhhhhhhhhhhhhhc-CCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEe
Confidence 11111122233444445556667778888876 688887554444566676542111112233466777654 5877554
Q ss_pred eccc--cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 727 PASQ--EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 727 ~s~~--~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+... .+..++ +++.. .++++++..++.|++.+
T Consensus 393 G~~F~~~~~~~~Ri~~a~-~~e~~l~~al~rL~~~l 427 (431)
T d1m7ya_ 393 GSSCHCTEPGWFRVCFAN-LPERTLDLAMQRLKAFV 427 (431)
T ss_dssp GGGGTCSSTTEEEEECSS-SCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCEEEEEeCc-CCHHHHHHHHHHHHHHH
Confidence 4432 334566 88753 46788998888887765
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=97.02 E-value=0.033 Score=58.16 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=50.8
Q ss_pred HHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeee
Q psy852 156 EKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVD 231 (891)
Q Consensus 156 ~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvD 231 (891)
.......+..++.++++. +|....+++++.+.+. +-+|+++--+|.||.+-+ +.+|+++|+++++++.+|
T Consensus 110 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~D 183 (355)
T d1lc5a_ 110 GRALAQSGCEIRRWSLREADGWQLTDAILEALTPD------LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILD 183 (355)
T ss_dssp HHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccccccccccceeeeeeccCCccceeeeeeccccc------cceeeeecccCcccccchhhhhhhhhhhccccccccccc
Confidence 334455667888888763 3333334455544433 335666677999999876 667778889999999999
Q ss_pred cccc
Q psy852 232 GAYA 235 (891)
Q Consensus 232 aA~G 235 (891)
-+|.
T Consensus 184 e~y~ 187 (355)
T d1lc5a_ 184 EAFI 187 (355)
T ss_dssp CTTG
T ss_pred ccee
Confidence 9984
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=96.98 E-value=0.0022 Score=68.08 Aligned_cols=283 Identities=9% Similarity=-0.067 Sum_probs=160.2
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH--HHcCc
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA--MMAFV 528 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa--~l~gv 528 (891)
.+++.|+. ++.+++. +|+|||+++..++..... +.-.+++....|++..... ...+.
T Consensus 58 ~L~~ll~~-~~~~~i~-~~gsgT~a~ea~~~~l~~-------------------~~~~vl~~~~g~~~~~~~~~~~~~~~ 116 (388)
T d2ch1a1 58 GLRYIFQT-ENRATMC-VSGSAHAGMEAMLSNLLE-------------------EGDRVLIAVNGIWAERAVEMSERYGA 116 (388)
T ss_dssp HHHHHHTC-CCSCEEE-ESSCHHHHHHHHHHHHCC-------------------TTCEEEEEESSHHHHHHHHHHHHTTC
T ss_pred HHHHHhCC-CCCeEEE-EcCcHHHHHHHHHHHhcc-------------------ccccccccccccccccchhhhhhhcc
Confidence 44555544 3334331 677888887765544311 1223555566666554333 34566
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhh-----hhcCC------------CCcc
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYR-----KSQGI------------EYAD 583 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~-----~ldGi------------~~aD 583 (891)
....++.+.....+.+..++++......-.....+.++.|+.. |++ .+|++ -.+|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d 196 (388)
T d2ch1a1 117 DVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEID 196 (388)
T ss_dssp EEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCC
T ss_pred cccccccccccccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCce
Confidence 7777888777888888888887553211011112233445443 333 24442 2489
Q ss_pred EEEEcCcccCCcccccEEEEEeCCccchhhhccCCCcc--ccCCCCCccccCCcc-ccccc-----ccchHHHHHHHHHH
Q psy852 584 SFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYL--QHGHEGAIDYRHWGI-PLSRR-----FRSLKLWFVIRTYG 655 (891)
Q Consensus 584 SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl--~~~~e~~~~~~~~ti-~~SRr-----~~aL~lW~~L~~lG 655 (891)
.+.++.|||+++|.|+|+++++.+..- ........+. ............... ...++ .....++..++.+.
T Consensus 197 ~~~~s~~K~~~gp~G~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~ 275 (388)
T d2ch1a1 197 AVYTGAQKVLGAPPGITPISISPKALD-VIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA 275 (388)
T ss_dssp EEECCCC-CCCCCSSCEEEEECHHHHH-HHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEccccccCCCCeEEEEeccHHHHH-hhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999876322 1111111100 000000000000000 00111 11234566667777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeecccc
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQE 731 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~~ 731 (891)
..+..+..++...+..++...+........+.++. .++++|++++. ....++...|.+ .|+.+..+...-
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g------~~~~~l~~~l~~~~gI~v~~G~~~~ 349 (388)
T d2ch1a1 276 EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKG------VDWWKVSQYAMNNFSLEVQGGLGPT 349 (388)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTT------CCHHHHHHHHHHHHCBCCBCCCGGG
T ss_pred HhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCC------CCHHHHHHHHhhcCCEEEeCCCccc
Confidence 78888888888888777777776654333333332 35889999531 234577777755 577644443333
Q ss_pred CCeEE-EE-ecCCCCHHHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FE-LQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 732 g~~~l-~s-v~~~tT~edId~li~~L~ei~~~ 761 (891)
...++ |+ ++..+|+|||++++++|+++++.
T Consensus 350 ~~~~~RIs~~g~~~t~edI~~ll~alke~L~~ 381 (388)
T d2ch1a1 350 FGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 381 (388)
T ss_dssp TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 44456 88 67788999999999999988753
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.003 Score=68.24 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=70.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcC---CcceEEEeecccCcccccc---CHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG---YIPFFVSTTLGTTSCCSFD---NLAEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g---~~p~~V~~t~Gtt~~GavD---pl~~I 217 (891)
.|++..-.+......+...+.+++.++.+++| +|++.++..+.+..... ....+++.+-.+|.||.+- .+.+|
T Consensus 130 ~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i 208 (420)
T d1vp4a_ 130 YCVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKAL 208 (420)
T ss_dssp EEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred ccccccccccchhHHHHHHhhhcccccccccc-cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhh
Confidence 36666667777777777788899999988764 79999988876543332 2334666777789999874 55788
Q ss_pred HHHHHHcCCceeeeccccCC
Q psy852 218 GPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~ 237 (891)
+++|+++++++.+|-+|..+
T Consensus 209 ~~~a~~~~i~ii~De~y~~l 228 (420)
T d1vp4a_ 209 VEIAEKYDLFIVEDDPYGAL 228 (420)
T ss_dssp HHHHHHTTCEEEEECSSTTC
T ss_pred hhhhhcccccccccchhhhc
Confidence 89999999999999999543
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.95 E-value=0.011 Score=63.16 Aligned_cols=86 Identities=8% Similarity=-0.038 Sum_probs=65.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I~~ 219 (891)
|++.+-+.......+...|.+++.++.+ +++.+|++++++.+.+.. .+|+.+--+|.||.+-+- .+|++
T Consensus 120 vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~------~~v~l~~P~NPTG~~~s~~~~~~l~~ 193 (395)
T d1xi9a_ 120 ILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRT------KAIAVINPNNPTGALYDKKTLEEILN 193 (395)
T ss_dssp EEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccc------cEEEecCCCCCccchhhHHHHHHHHh
Confidence 5555566667777777778888888864 356899999998876542 356666679999999665 67778
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|+++++++..|-+|+.
T Consensus 194 ~~~~~~~~ii~De~y~~ 210 (395)
T d1xi9a_ 194 IAGEYEIPVISDEIYDL 210 (395)
T ss_dssp HHHHHTCCEEEECTTTT
T ss_pred hhhhcCeeEEecccccc
Confidence 88999999999999944
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=96.91 E-value=0.013 Score=62.19 Aligned_cols=242 Identities=9% Similarity=0.017 Sum_probs=131.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +|+|+++++..++.+. .+ +.-.|++..-.......++...|.+++.+|.++ +..
T Consensus 93 ~i~--it~G~~~al~~~~~~l----~~---------------~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 151 (382)
T d1b5pa_ 93 ETI--VTVGGSQALFNLFQAI----LD---------------PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFV 151 (382)
T ss_dssp GEE--EESHHHHHHHHHHHHH----CC---------------TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred cce--ecCCHHHHHHHHHHHh----CC---------------CCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccC
Confidence 455 6778888776665442 10 112355555566666777788899999998753 467
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEec----CCccc-----------hhhh--------------hcCC-------CCccE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVSTT----LGTTS-----------CYRK--------------SQGI-------EYADS 584 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~-----------c~~~--------------ldGi-------~~aDS 584 (891)
+|+++|++++++. ..++++++ .|++. |.++ .++- ..=..
T Consensus 152 ~d~~~l~~~~~~~-----~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 226 (382)
T d1b5pa_ 152 PDPERVRRAITPR-----TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHT 226 (382)
T ss_dssp CCHHHHHTTCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTE
T ss_pred CCHHHHHHhCCCC-----CeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCE
Confidence 8999999888653 22333333 56654 3221 1110 00123
Q ss_pred EE-EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH-----HHh
Q psy852 585 FN-VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY-----GLS 657 (891)
Q Consensus 585 Is-~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l-----G~~ 657 (891)
|+ .++.|.++.| .-+|+++..++ .+.......... ....+ .+.++.....+ ...
T Consensus 227 i~~~s~SK~~~~~GlR~G~~~~~~~-~i~~~~~~~~~~--------------~~~~~----~~~~~~~~~~~~~~~~~~~ 287 (382)
T d1b5pa_ 227 LTVNGAAKAFAMTGWRIGYACGPKE-VIKAMASVSRQS--------------TTSPD----TIAQWATLEALTNQEASRA 287 (382)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHHHTT--------------TCSCC----HHHHHHHHHHHHCHHHHHH
T ss_pred EEEecchhhccCcHhheEEEEECHH-HHHHHHHHHHhc--------------ccCcc----cccccccccccccccchhH
Confidence 44 4678988777 66888765332 222211110000 00000 11111221211 112
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
-+....+......+.+.+.+... ++++..+.....+++++.+. ......+.+.|.+.|+++.-+....+...+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~gg~~~~~~~~~~-----~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iR 361 (382)
T d1b5pa_ 288 FVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI-----APDEVRAAERLLEAGVAVVPGTDFAAFGHVR 361 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTT-----CSSHHHHHHHHHHTTEECEESGGGTCTTEEE
T ss_pred HHHHHHHHHHhhhhHHHHHHhhc-CCeEecCCceEEEeEeCCCC-----CCCHHHHHHHHHHCCEEEEeCcccCCCCeEE
Confidence 22222333344455666666653 56654443445667777654 224566778888999887766666556667
Q ss_pred EEecCCCCHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~e 757 (891)
+++. +++++|+++++.|.+
T Consensus 362 is~~--~~~e~l~~al~rl~~ 380 (382)
T d1b5pa_ 362 LSYA--TSEENLRKALERFAR 380 (382)
T ss_dssp EECC--SCHHHHHHHHHHGGG
T ss_pred EEEc--CCHHHHHHHHHHHHH
Confidence 8875 478888888777654
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=96.89 E-value=0.0055 Score=64.41 Aligned_cols=279 Identities=9% Similarity=0.002 Sum_probs=157.9
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH--HHcCc
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA--MMAFV 528 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa--~l~gv 528 (891)
.+++.|..-+...|+ +++|||+++..++... .. +...+++....|.+..... ...+.
T Consensus 59 ~l~~ll~~~~~~~i~--~~g~gT~~~~~~~~~~----~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (377)
T d1vjoa_ 59 LLRYVWQTENPLTIA--VSGTGTAAMEATIANA----VE---------------PGDVVLIGVAGYFGNRLVDMAGRYGA 117 (377)
T ss_dssp HHHHHHTCCCSCEEE--ESSCHHHHHHHHHHHH----CC---------------TTCEEEEEESSHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCeEEE--EcCcHHHHHHHHHHhc----cc---------------cccccceeeechhhhhhhhhhhhhcc
Confidence 344444444455666 6788898877665442 11 1223445555665443332 34555
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC------------CCc
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI------------EYA 582 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi------------~~a 582 (891)
....+....+...+.+..+........ ..+ ...+.++.|+.. |++ ++|++ -.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~ 196 (377)
T d1vjoa_ 118 DVRTISKPWGEVFSLEELRTALETHRP-AILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGV 196 (377)
T ss_dssp EEEEEECCTTCCCCHHHHHHHHHHHCC-SEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTC
T ss_pred cccccccCCCCcccchhhhhhhhcCcc-eeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhccccccc
Confidence 666666655566666666655544321 111 112233445544 333 24443 247
Q ss_pred cEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC----CCccccCCcccccccccc-hHHHHHHHHHHHh
Q psy852 583 DSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE----GAIDYRHWGIPLSRRFRS-LKLWFVIRTYGLS 657 (891)
Q Consensus 583 DSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e----~~~~~~~~ti~~SRr~~a-L~lW~~L~~lG~~ 657 (891)
|.+.++.|||+++|.++|++++++.. +.........+...... .............-.... ..+=..+..+...
T Consensus 197 d~~~~s~~K~~~gp~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (377)
T d1vjoa_ 197 DLAYSCSQKGLGCSPGASPFTMSSRA-IEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE 275 (377)
T ss_dssp SEEECCSSSTTCSCSSCEEEEECHHH-HHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred ceeeecccccccCCCEEEEecchhhH-HhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhc
Confidence 99999999999999999999988653 22111111111100000 000000000000001111 1222334445677
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccccCC
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQEQN 733 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g~ 733 (891)
|.+.+.++..++++++.+.+... ++.++.++. .++++|.++. +....++...|. +.|+.+..+....+.
T Consensus 276 g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~------~~~~~~l~~~L~~~~gI~v~~G~~~~~~ 348 (377)
T d1vjoa_ 276 GLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPD------GVDGKAVARRLLNEHNIEVGGGLGELAG 348 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCT------TCCHHHHHHHHHHHHCEECEECCGGGTT
T ss_pred CchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEECCC------CCCHHHHHHHHHhcCCEEEecCcccccC
Confidence 88888889999999999999874 555554432 3688899852 224677888775 568876555555555
Q ss_pred eEE-EE-ecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FE-LQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~s-v~~~tT~edId~li~~L~ei~ 759 (891)
.++ |+ +++++|+||||+++++|++++
T Consensus 349 ~~~Ris~~g~~~t~edi~~lv~al~~~l 376 (377)
T d1vjoa_ 349 KVWRVGLMGFNSRKESVDQLIPALEQVL 376 (377)
T ss_dssp TEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CEEEEecCcCCCCHHHHHHHHHHHHHHh
Confidence 567 98 578889999999999999875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=96.89 E-value=0.016 Score=61.73 Aligned_cols=250 Identities=8% Similarity=-0.029 Sum_probs=132.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +|.|+++++..++.+..+ +.-.|++..-.+......+...+.+++.||.++++.-.
T Consensus 96 ~I~--it~G~~~al~~~~~~l~~-------------------~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 154 (403)
T d1wsta1 96 EIM--TVAGSQQALDLIGRVFLN-------------------PGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRV 154 (403)
T ss_dssp EEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECH
T ss_pred Hee--ecccchHHHHHHHHHHhh-------------------cCCccccCCCcchhhhHHHhhccccceeEeecccCCcc
Confidence 566 788999998887765211 12246666777888888888889999999887654322
Q ss_pred HHHHHHHHHhhhh-cCCccEEEE-----ecCCccc-----------hhhh--------------hcCC----------CC
Q psy852 543 GATLRQVMQQDET-MGYIPFFVS-----TTLGTTS-----------CYRK--------------SQGI----------EY 581 (891)
Q Consensus 543 ~~~Le~aI~~d~~-~g~ip~~Vv-----ataGTT~-----------c~~~--------------ldGi----------~~ 581 (891)
. .+......... ......+++ +-.|.+. |.+| .++- ..
T Consensus 155 ~-~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~ 233 (403)
T d1wsta1 155 D-LLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYG 233 (403)
T ss_dssp H-HHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSS
T ss_pred c-cccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCC
Confidence 2 22222222111 112222222 2235443 3321 0110 11
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH----Hh
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG----LS 657 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG----~~ 657 (891)
-.-+.-+.+|+++.-.-+|+++..+. .+....... .+ .... ...+.+........ ..
T Consensus 234 ~~i~~~S~SK~~~~G~RiG~~i~~~~-~i~~~~~~~-~~-------------~~~~----~~~~~~~~~~~~~~~~~~~~ 294 (403)
T d1wsta1 234 RVIYLGTFSKILAPGFRIGWVAAHPH-LIRKMEIAK-QS-------------IDLC----TNTFGQAIAWKYVENGYLDE 294 (403)
T ss_dssp CEEEEEESTTTTCGGGCCEEEEECHH-HHHHHHHHH-HH-------------HHSS----CCHHHHHHHHHHHHTTHHHH
T ss_pred cEEEEccccceecCcccccccccchH-HHHHHHHHH-hh-------------hccc----cccchhhhHHhhhhccccch
Confidence 22345688999874477888887432 221111000 00 0000 00111112222222 22
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC--CCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc----c
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRD--PRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ----E 731 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~--~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~----~ 731 (891)
.+.+..+......+.+.+.|.+. .++....+.....+++++++. ...+.+.+.|.++|+.++-++.. .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~------~~~~~~~~~l~~~gV~v~pg~~f~~~~~ 368 (403)
T d1wsta1 295 HIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEG------IDTKLMMERAVAKGVAYVPGEAFFVHRD 368 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCTT------CCTTTTHHHHHHTTEECEEGGGGSTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECCCC------CCHHHHHHHHHHCCEEEEechhhcCCCC
Confidence 23444555566667777777653 356555444455666777532 13346778888899875543322 2
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+...+ ++++. .++++|+.+++.|++.++
T Consensus 369 ~~~~iRi~~~~-~~~~~l~~al~rl~~~l~ 397 (403)
T d1wsta1 369 KKNTMRLNFTY-VPEETIREGVRRLAETIK 397 (403)
T ss_dssp CCSEEEEECSS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecC-CCHHHHHHHHHHHHHHHH
Confidence 34566 88754 578999999888887763
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=96.86 E-value=0.013 Score=61.90 Aligned_cols=264 Identities=12% Similarity=0.134 Sum_probs=144.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLR 547 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le 547 (891)
.+++||.|+.+|+.+..- .+.-.|+++...+.+...++...|..++.+.+|++..++..+.+
T Consensus 41 ~~~SgT~Al~lal~~l~~------------------~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~ 102 (374)
T d1o69a_ 41 ALNSATAALHLALRVAGV------------------KQDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLK 102 (374)
T ss_dssp EESCHHHHHHHHHHHTTC------------------CTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHH
T ss_pred EeCCHHHHHHHHHHHcCC------------------CCcCEEEeCCcchHhhHHHHhhccceeEeccccccccccccccc
Confidence 467889999988876411 12235899999999999999889999999999887665555544
Q ss_pred HHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcC-----CCCccEEEEcCcccCCccccc
Q psy852 548 QVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQG-----IEYADSFNVNVNKWLLTAFDS 599 (891)
Q Consensus 548 ~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldG-----i~~aDSIs~d~HK~L~~P~g~ 599 (891)
+....... ....++++...|... |.++ .+| ...+-.+||.+.|-+.+- +-
T Consensus 103 ~~~~~~~~-~~~aii~~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~~K~l~tg-eG 180 (374)
T d1o69a_ 103 LAIKECEK-KPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTS-GG 180 (374)
T ss_dssp HHHHHCSS-CCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS-SC
T ss_pred ccchhccc-ccccccccccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccCccccccc-cc
Confidence 44333221 223455555566654 4331 111 122345555566887654 45
Q ss_pred EEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Q psy852 600 SCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR 679 (891)
Q Consensus 600 G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~ 679 (891)
|++++.+++................ ........+ -.++---+-+++-......+.+.+++..++++++.+.|..
T Consensus 181 G~i~tnn~~~~~~~~~~~~~g~~~~--~~~~~~~~G----~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~ 254 (374)
T d1o69a_ 181 GMLIGKNKEKIEKARFYSTQARENC--LHYEHLDYG----YNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGE 254 (374)
T ss_dssp EEEEESCHHHHHHHHHHTBTCCCSS--SSCCCSSCC----CBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeehhhhHHHHHhhccccccccccc--cccccccCC----ccccccchhhhhhHHHHhhhhhhcchhHHHHHHHHhhccc
Confidence 8888887765433322111110000 000111111 1123333344445556677888888888999999999976
Q ss_pred CCCcEEeCCCc-------eeEEEEEecCCc-------------chhhhhhHHHHHHHHHhCCcEEE---eecc----ccC
Q psy852 680 DPRFEISNDVR-------LGLVCFRLRSEN-------------NLIADQNNRKLLEDINASGRLHM---VPAS----QEQ 732 (891)
Q Consensus 680 ~~~~eil~~~~-------~~iV~Fr~~~~~-------------~~~~d~ln~~L~~~L~~~G~~~~---s~s~----~~g 732 (891)
...+ +.++. ...+.+...... ..........+.+.|.+.|+-.. .+.. ...
T Consensus 255 ~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~ 332 (374)
T d1o69a_ 255 YFSF--LDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKG 332 (374)
T ss_dssp TEEC--CCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTT
T ss_pred cccc--cccccCCCCChhheeeeeccccccccccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhc
Confidence 4322 11111 111111110000 00112234568899999886411 0100 000
Q ss_pred -------------CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 733 -------------NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 -------------~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+ +-+++.+|++||+++++.|.+.+
T Consensus 333 ~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~l 373 (374)
T d1o69a_ 333 AKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSI 373 (374)
T ss_dssp CEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHH
Confidence 1123 44677899999999999998765
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=96.82 E-value=0.0043 Score=66.49 Aligned_cols=89 Identities=9% Similarity=-0.118 Sum_probs=66.1
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC---CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD---DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d---~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
|++..-..+.........+.+.+.++.+ ..+.+|.+.++..+.... +.+++++--+|.||++-+ +.+|+
T Consensus 116 vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~i~l~~P~NPTG~v~s~~~l~~l~ 190 (394)
T d1c7na_ 116 VIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKN-----NKALLFCSPHNPVGRVWKKDELQKIK 190 (394)
T ss_dssp EEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTT-----EEEEEEESSBTTTTBCCCHHHHHHHH
T ss_pred cccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhcccc-----ceEEEecccccccceeccHHHhhhhh
Confidence 5565667777777777777777777653 445688888887764321 346777788999999965 55688
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|++++++|.+|-+|+.+.
T Consensus 191 ~~a~~~~~~ii~De~Y~~~~ 210 (394)
T d1c7na_ 191 DIVLKSDLMLWSDEIHFDLI 210 (394)
T ss_dssp HHHHHSSCEEEEECTTTTCB
T ss_pred ccccccceeEeccccccccc
Confidence 88999999999999996543
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=96.80 E-value=0.017 Score=61.78 Aligned_cols=258 Identities=9% Similarity=-0.033 Sum_probs=139.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ ++.|+++++..++.+. . .+.-.|++.+-........+.+.|++++.+|+++ +..
T Consensus 103 ~I~--it~G~~~al~~~~~~l----~---------------~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 161 (412)
T d1bw0a_ 103 NVV--LCSGGSHGILMAITAI----C---------------DAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWE 161 (412)
T ss_dssp GEE--EESHHHHHHHHHHHHH----C---------------CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTE
T ss_pred eEE--Eecccccchhhhhhhh----h---------------ccccceeeeeccchhhhhhhhccCccccccccccccccc
Confidence 555 6788888887776542 1 1122355555566666777888999999999854 467
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh--------------hcCC------------C
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK--------------SQGI------------E 580 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~--------------ldGi------------~ 580 (891)
.++++|++.+.+.+ ..+++++ -.|++. |.++ .+|. +
T Consensus 162 ~~~~~l~~~~~~~~----~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~ 237 (412)
T d1bw0a_ 162 ADLDEIRRLKDDKT----KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE 237 (412)
T ss_dssp ECHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred hhhHHHHhhhhccc----cccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccc
Confidence 99999988776532 2334432 345554 2221 1111 1
Q ss_pred C-ccEEE-EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 581 Y-ADSFN-VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 581 ~-aDSIs-~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
. ...++ .+..|.++.| .=+|+++..+.......+......+. ..+...+ ......+...+.....+
T Consensus 238 ~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~ 306 (412)
T d1bw0a_ 238 TTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG----------MLVCGPC-TVVQAALGEALLNTPQE 306 (412)
T ss_dssp CSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH----------HHHTCSC-HHHHHHHHHHHHSSCHH
T ss_pred cccccccccccCccCccCCCCcccccccchhhcchhhhhhhcccc----------ccccCCc-hhhhhhccccccccccc
Confidence 1 12333 3578877666 55888887654221100000000000 0000000 00001111111112234
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeeccccCCeEE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQEQNDEV 736 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~~g~~~l 736 (891)
-+.+..++..+.++++.+.|.+.+++++..+....-+..++....... .....++.++|.+ .|++++-++...+.+.+
T Consensus 307 ~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~-~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~i 385 (412)
T d1bw0a_ 307 HLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRD-IKTDVEFFEKLLEEENVQVLPGTIFHAPGFT 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSS-CCSHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred ccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhcCC-CCCHHHHHHHHHHhCCEEEEeccccCCCCeE
Confidence 556667777888999999998888888765444444544553211000 1134567777654 69886666655556667
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++. ++++++++.++.|++.+
T Consensus 386 Ris~~--~~~e~l~eal~Rl~~~l 407 (412)
T d1bw0a_ 386 RLTTT--RPVEVYREAVERIKAFC 407 (412)
T ss_dssp EEECC--SCHHHHHHHHHHHHHHH
T ss_pred EEEEc--CCHHHHHHHHHHHHHHH
Confidence 8874 46788887777776543
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.63 E-value=0.055 Score=58.30 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=59.8
Q ss_pred EEEecCCCChHHHHHHH-H---cCCeEEEEecCCCCcccHHHHHHHH-HhhhhcCCcceEEEeecccCccccccCHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM-M---AFVRLKILEPDDKNSLRGATLRQVM-QQDETMGYIPFFVSTTLGTTSCCSFDNLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~---~~~~v~~V~~d~~g~id~~~L~~~l-~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~ 218 (891)
.|+++.........-+. + .++.+..++. .+.++.++.+ .+. +.+|.+=.-+|.+.-+-||++|+
T Consensus 108 ~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~-----~~~~~~~~~~~~~~------t~~v~~EspsNP~l~v~Di~~ia 176 (398)
T d1qgna_ 108 HIVTTTDCYRKTRIFIETILPKMGITATVIDP-----ADVGALELALNQKK------VNLFFTESPTNPFLRCVDIELVS 176 (398)
T ss_dssp EEEEETTSCHHHHHHHHHTGGGGTCEEEEECS-----SCHHHHHHHHHHSC------EEEEEEESSCTTTCCCCCHHHHH
T ss_pred cccccccccchhhhhhcccccccccccccccc-----cchhhhhhhhcccc------ceEEEccCccccccccchHHHHH
Confidence 47777777766655542 2 4566666652 1334444433 333 34788888899999999999999
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|+++|+.+.||.+|+..+
T Consensus 177 ~ia~~~g~~~vVDnT~atP~ 196 (398)
T d1qgna_ 177 KLCHEKGALVCIDGTFATPL 196 (398)
T ss_dssp HHHHHTTCEEEEECTTTCTT
T ss_pred HHHhhcCCEEEecceeeccc
Confidence 99999999999999995544
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.16 Score=54.58 Aligned_cols=193 Identities=9% Similarity=0.104 Sum_probs=103.1
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE--ec-CCccc---hhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhh
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS--TT-LGTTS---CYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSAL 614 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv--at-aGTT~---c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l 614 (891)
.+++-|+.+-+-+++.+ +++++. .| .|.|. ++++. |+. .|-+++ -|.++.=++.|+++.+++. .+.+
T Consensus 216 ~~~~~l~~l~~lc~~~g-illI~DEV~tG~gR~g~~~a~~~~-gv~-PDi~~~--gK~l~gG~P~~av~~~~~i--~~~~ 288 (425)
T d1sffa_ 216 SSPAFMQRLRALCDEHG-IMLIADEVQSGAGRTGTLFAMEQM-GVA-PDLTTF--AKSIAGGFPLAGVTGRAEV--MDAV 288 (425)
T ss_dssp CCHHHHHHHHHHHHHHT-CEEEEECTTTTTTTTSSSSGGGGT-TSC-CSEEEE--CGGGGTSSCCEEEEEEHHH--HTTS
T ss_pred CCHHHHHHHHHHHHHcC-ceEEeccccccCCCcchhhHHHhc-CCC-ccceec--ccccCCCcceEEEEEcHHH--HHhh
Confidence 35555555444444433 344443 22 25565 44554 564 687775 4666555678999998772 1111
Q ss_pred ccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh----ccCCCcEEeCCCc
Q psy852 615 VVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKV----RRDPRFEISNDVR 690 (891)
Q Consensus 615 ~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L----~~~~~~eil~~~~ 690 (891)
. +.. ...|.. +-+........+|+.+-.+.+.+.+ ..+.++|.+.| ++.+.+.-+.- .
T Consensus 289 ~--~~~-----------~~~T~~-gnpl~~aaa~a~L~~i~~~~~~~~~---~~~g~~l~~~l~~~~~~~~~v~~vrg-~ 350 (425)
T d1sffa_ 289 A--PGG-----------LGGTYA-GNPIACVAALEVLKVFEQENLLQKA---NDLGQKLKDGLLAIAEKHPEIGDVRG-L 350 (425)
T ss_dssp C--TTS-----------BCCSSS-SCHHHHHHHHHHHHHHHHTTHHHHH---HHHHHHHHHHHHHHHHTCTTEEEEEE-E
T ss_pred C--CCC-----------CCCCCC-cCHHHHHHHHHHHHHHHHhhhhhhh---hhhhhhhhhhhhhhHhhCCceEEEEc-c
Confidence 1 000 011221 2233444555666666665554444 44445555544 44443222211 1
Q ss_pred eeEEEEEecCCc--chhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 691 LGLVCFRLRSEN--NLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 691 ~~iV~Fr~~~~~--~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
-.+.+|.+.... ...-..+...+.++|.++|+++.. +... ...+ +++...+|++|||++++++++...
T Consensus 351 Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~-~g~~-~n~i~~~PpL~it~~eid~~l~~l~~al~ 421 (425)
T d1sffa_ 351 GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLS-CGPY-YNVLRILVPLTIEDAQIRQGLEIISQCFD 421 (425)
T ss_dssp TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEE-ESTT-SCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEec-cCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 125566654321 111134567888999999987432 2222 2345 777777899999999999998874
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=96.52 E-value=0.015 Score=61.47 Aligned_cols=178 Identities=11% Similarity=0.107 Sum_probs=119.4
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..-.....+-+ .-.|+++.+++.+ |++.+++++++.+ .+|.+-.-+|.+..+.|+..+++
T Consensus 39 ~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~-----d~~~~~~~i~~~t------~~i~~Es~~np~~~v~d~~~~~~ 107 (331)
T d1pffa_ 39 HLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-----VPGNIEKHLKPNT------RIVYFETPANPTLKVIDIEDAVK 107 (331)
T ss_dssp EEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHTCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-----chhhHhhhccccc------ceeeeecccccccccccchhhhh
Confidence 3777776665554443 2256788888654 6788888887654 47888888899999999999999
Q ss_pred HH-HHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccch
Q psy852 220 VA-KEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDE 298 (891)
Q Consensus 220 i~-~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (891)
++ +++|+.+.||-+|+..+.. +|.
T Consensus 108 ~~a~~~~~~~vVDnT~atp~~~-------------------~pl------------------------------------ 132 (331)
T d1pffa_ 108 QARKQKDILVIVDNTFASPILT-------------------NPL------------------------------------ 132 (331)
T ss_dssp HHTTSSSCEEEEECTTTHHHHC-------------------CGG------------------------------------
T ss_pred hhhcccCceEEeeccccccccc-------------------ccc------------------------------------
Confidence 85 5688999999999543321 110
Q ss_pred hhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCc--cC
Q psy852 299 GVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLT--AF 376 (891)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~--p~ 376 (891)
- ..||-+.-+.=|++.+ -.
T Consensus 133 --------------------------------------------------------~---~GaDiVv~S~TKy~~Gh~d~ 153 (331)
T d1pffa_ 133 --------------------------------------------------------D---LGVDIVVHSATKYINGHTDV 153 (331)
T ss_dssp --------------------------------------------------------G---GTCSEEEEETTTTTSSSSSC
T ss_pred --------------------------------------------------------c---cCCCEEEecchhhcCCCCcc
Confidence 0 0267888888888554 34
Q ss_pred CceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhh
Q psy852 377 DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKV 456 (891)
Q Consensus 377 ~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L 456 (891)
-.|+++.++......... ++.. +. .-...+...|..++ |.+-+..++++..++|..+++.|
T Consensus 154 ~~G~v~~~~~~~~~~~~~----~~~~------------~~-G~~l~p~~a~ll~r--gl~Tl~~Rm~~~~~nA~~lA~~L 214 (331)
T d1pffa_ 154 VAGLVCSRADIIAKVKSQ----GIKD------------IT-GAIISPHDAWLITR--GTLTLDMRVKRAAENAQKVAEFL 214 (331)
T ss_dssp CCEEEEECHHHHHHHHHT----CCCC------------CC-CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhh----hhhh------------cc-CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 457777764422211110 0000 00 11234567788886 88889999999999999999999
Q ss_pred ccCCccccc
Q psy852 457 RRDPRFEIS 465 (891)
Q Consensus 457 ~~~~~~eVv 465 (891)
.++|.++-+
T Consensus 215 ~~hp~V~~V 223 (331)
T d1pffa_ 215 HEHKAVKKV 223 (331)
T ss_dssp HHCTTCCCE
T ss_pred hhCCcEEee
Confidence 999987544
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.067 Score=57.47 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=62.6
Q ss_pred EEEecCCCChHHHHHHH-H---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM-M---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..-+....+-+. . .|+++..++.+ |.+++++++++.+ -+|.+=.-+|.+.-+-||+.|++
T Consensus 99 ~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~-----d~~~~~~~i~~~t------~~i~~EtpsNP~l~v~Di~~i~~ 167 (391)
T d1cl1a_ 99 HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQPNT------KIVFLESPGSITMEVHDVPAIVA 167 (391)
T ss_dssp EEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGTCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred eEEEecccccchhhhhhhcccccccccccccCc-----ccccccccccccc------ceeeecccCcccccccccHHHHH
Confidence 38888888877766652 2 45677777643 5677777776654 47777778888999999999999
Q ss_pred HHHHc--CCceeeeccccCCc
Q psy852 220 VAKEF--DVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~--~~~lHvDaA~GG~~ 238 (891)
+|+++ |+.+.||.+|+..+
T Consensus 168 ~a~~~~~g~~~vVDnT~atP~ 188 (391)
T d1cl1a_ 168 AVRSVVPDAIIMIDNTWAAGV 188 (391)
T ss_dssp HHHHHCTTCEEEEECTTTTTT
T ss_pred HHHhccCCcEEEEeccccchh
Confidence 99875 88899999995543
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=96.41 E-value=0.1 Score=55.98 Aligned_cols=84 Identities=7% Similarity=0.064 Sum_probs=61.4
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..-+....+-+. -.++.+..++.+ |++++++.+++.+ -+|.+-.-+|.+..+-|+.++++
T Consensus 100 ~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~-----d~~~~~~~i~~~t------~lv~~Etp~NP~l~v~Di~~~~~ 168 (394)
T d1e5ea_ 100 HLISDECLYGCTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMKPNT------KIVYFETPANPTLKIIDMERVCK 168 (394)
T ss_dssp EEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred ccccccceeehhhHhHHHHhhccceeeeccCCC-----CHHHHHHhhcccc------cEEEEeccCCcceeeehhhhhhh
Confidence 47777777766655442 256788888753 4567888887664 37777777899999999999998
Q ss_pred HHHH-cCCceeeeccccCCc
Q psy852 220 VAKE-FDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~-~~~~lHvDaA~GG~~ 238 (891)
++++ +|+.+.||.+|+..+
T Consensus 169 ~~~~~~g~~vvvDnT~atP~ 188 (394)
T d1e5ea_ 169 DAHSQEGVLVIADNTFCSPM 188 (394)
T ss_dssp HHHTSTTCEEEEECTTTCTT
T ss_pred ccccccCeEEEecCcccCcc
Confidence 7765 678899999995433
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.064 Score=55.94 Aligned_cols=84 Identities=11% Similarity=-0.009 Sum_probs=61.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH-
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK- 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~- 222 (891)
+|+++.-........+...+.+++.++.++++.+|+++++..+.+ +-+|+.+--+|.+|.+-+-+++..++.
T Consensus 100 ~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~~~-------~~~v~~~~pnNPtG~~~~~~~~~~~~~~ 172 (354)
T d1fg7a_ 100 AILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDG-------VKVVYVCSPNNPTGQLINPQDFRTLLEL 172 (354)
T ss_dssp EEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCTT-------EEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred cccccccccccchhhhhccCceeeccccccccccchhhhhhcccc-------cceeeccCCCccceeEeeeccccccccc
Confidence 466666666666666677788999999999999999999876532 347778889999999977665554443
Q ss_pred -HcCCceeeeccc
Q psy852 223 -EFDVWLHVDGAY 234 (891)
Q Consensus 223 -~~~~~lHvDaA~ 234 (891)
+++..+.+|=++
T Consensus 173 ~~~~~~~iidd~~ 185 (354)
T d1fg7a_ 173 TRGKAIVVADEAY 185 (354)
T ss_dssp HTTTCEEEEECTT
T ss_pred ccccccccccccc
Confidence 245556666665
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=96.19 E-value=0.024 Score=60.38 Aligned_cols=250 Identities=8% Similarity=-0.087 Sum_probs=131.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC---CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKN 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~---d~~G 539 (891)
+|+ +|.|+++++..++.+.- .+.-.|++..-..+.........+...+.+|. +...
T Consensus 91 ~I~--vt~G~~~al~~~~~~~~-------------------~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~ 149 (394)
T d1c7na_ 91 WII--NTAGVVPAVFNAVREFT-------------------KPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYY 149 (394)
T ss_dssp GEE--EESSHHHHHHHHHHHHC-------------------CTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEE
T ss_pred ceE--eeccchhhhhhhhcccc-------------------ccccccccccCcccchhhHHhhhhhcccccccccccccc
Confidence 566 68899999888776521 11223555555667777777777877777775 3446
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC------------
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI------------ 579 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi------------ 579 (891)
.+|.+.++.++... +...++++ +-.|++. |.++ .++-
T Consensus 150 ~~d~~~~~~~~~~~---~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~ 226 (394)
T d1c7na_ 150 TIDFQKLEKLSKDK---NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQL 226 (394)
T ss_dssp ECCHHHHHHHHTCT---TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHH
T ss_pred cchhhhhhhhhccc---cceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhccc
Confidence 68998888876432 11233333 3356665 2221 1110
Q ss_pred CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHh
Q psy852 580 EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS 657 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~ 657 (891)
...--+..+..|.++.| .-+|++++.+.... +.+.....+.. ..+-. ......... .....+
T Consensus 227 ~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~-~~~~~~~~~~~--------------~~~~~~~~~~a~~~~-~~~~~~ 290 (394)
T d1c7na_ 227 ADKTITFTAPSKTFNIAGMGMSNIIIKNPDIR-ERFTKSRDATS--------------GMPFTTLGYKACEIC-YKECGK 290 (394)
T ss_dssp HTTEEEEECSHHHHTCGGGCCEEEECCCHHHH-HHHHHHHHHTT--------------CCCCCHHHHHHHHHH-HHHCHH
T ss_pred ccceeecccccccccccccccccccccChhhh-hhhhhhhhhcc--------------ccccccccchhhhhh-hcchhh
Confidence 00123344677876644 66777777665322 21110000000 00000 011111111 112233
Q ss_pred hHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeeccc--cCC
Q psy852 658 GLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQ--EQN 733 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~--~g~ 733 (891)
.+++..+...+..+.+.+.++. .+++.+..+.....+..+++.. .....++.+.|.+ .|++.+-++.. .+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~-----~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~ 365 (394)
T d1c7na_ 291 WLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRAL-----KMDHKAMEEFMIHKAQIFFDEGYIFGDGGI 365 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGG-----CCCHHHHHHHHHHTTCCCCEEGGGGCGGGT
T ss_pred hhcccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCC-----CCCHHHHHHHHHHhCCEEEEcchhhCCCCC
Confidence 4444444445555555565554 3566554443445666677532 2245677787765 48875544432 334
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+ +++. +++++|+++++.|++.+
T Consensus 366 ~~iRis~~--~~~e~i~eal~rl~~~l 390 (394)
T d1c7na_ 366 GFERINLA--APSSVIQESLERLNKAL 390 (394)
T ss_dssp TEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEe--CCHHHHHHHHHHHHHHH
Confidence 566 8874 57888998888887765
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.16 E-value=0.05 Score=57.92 Aligned_cols=227 Identities=8% Similarity=0.022 Sum_probs=121.9
Q ss_pred EEecccchHHHHHHHHHcCceEEEecC--CCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------h
Q psy852 509 AYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------C 572 (891)
Q Consensus 509 I~~S~~aH~Sv~Kaa~l~gv~v~~Vp~--d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c 572 (891)
|++..-........+.+.|.+++.+|. +.++.+|++++++.+.+.. ..++++ +-.|++. |
T Consensus 120 vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~----~~v~l~~P~NPTG~~~s~~~~~~l~~~~ 195 (395)
T d1xi9a_ 120 ILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRT----KAIAVINPNNPTGALYDKKTLEEILNIA 195 (395)
T ss_dssp EEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred EEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccc----cEEEecCCCCCccchhhHHHHHHHHhhh
Confidence 555555556777778888888888885 3457899999999886532 122232 2356654 3
Q ss_pred hhh--------------hcC--------CCCccEEEE-cCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCC
Q psy852 573 YRK--------------SQG--------IEYADSFNV-NVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGA 628 (891)
Q Consensus 573 ~~~--------------ldG--------i~~aDSIs~-d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~ 628 (891)
.++ .++ .....-|.+ +..|.++.| .=+|++++-+.......+......+..
T Consensus 196 ~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~----- 270 (395)
T d1xi9a_ 196 GEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLAR----- 270 (395)
T ss_dssp HHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHH-----
T ss_pred hhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhc-----
Confidence 221 011 111123433 689988777 347887765443221111000000000
Q ss_pred ccccCCcccccccccchHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhh
Q psy852 629 IDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIA 706 (891)
Q Consensus 629 ~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~ 706 (891)
.... ...+.+-++...+ +.+-+++..+...+.++.+.+.|++.+.+.+..+....-++.++....
T Consensus 271 -----~~~~----~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~---- 337 (395)
T d1xi9a_ 271 -----IRLC----PNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGP---- 337 (395)
T ss_dssp -----HTCC----SCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCS----
T ss_pred -----CCCC----cCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCC----
Confidence 0000 0011122222222 234566666677788899999999887776644433445555554210
Q ss_pred hhhHHHHHHH-HHhCCcEEEeeccc--cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 707 DQNNRKLLED-INASGRLHMVPASQ--EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 707 d~ln~~L~~~-L~~~G~~~~s~s~~--~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.....++... |.+.|+++.-++.. .+...+ +++. ++.+.++++++.|++.+
T Consensus 338 ~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~--~~~e~l~eal~rl~~~l 392 (395)
T d1xi9a_ 338 WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFM 392 (395)
T ss_dssp CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 1122344544 45678875544432 334456 8764 57788888888777665
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=96.14 E-value=0.093 Score=56.01 Aligned_cols=145 Identities=15% Similarity=0.060 Sum_probs=78.4
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|-+++. |.+++=+++++++.+.+.. .. ..+.+. +.|.. +-+......-.+|+.+-...
T Consensus 239 PDi~~~g--K~l~gG~~~~~~~~~~~~~--~~--~~~~~~-----------g~T~~-gnPla~aaa~a~L~~l~~~~--- 297 (387)
T d1vefa1 239 PDILTLA--KALGGGVPLGVAVMREEVA--RS--MPKGGH-----------GTTFG-GNPLAMAAGVAAIRYLERTR--- 297 (387)
T ss_dssp CSEEEEC--GGGGTTSSCEEEEEEHHHH--HT--SCTTSS-----------CCSST-TCHHHHHHHHHHHHHHHHHT---
T ss_pred Cceeeec--ccCCCCccccccccceeee--ec--cccCCc-----------cccCC-CCcchhhhcccchhhccccc---
Confidence 5888775 5554445667777776521 11 111111 11111 12223333334455554444
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCCC-ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EE
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISNDV-RL-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FE 738 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~s 738 (891)
..++..++.++|.++|+++..=.+ .+. .. .+..|.+... ....+...+.+.|.+.+. .+..++ ++
T Consensus 298 ~~~~v~~~g~~l~~~L~~l~~~~v-~~vrg~Gl~~~ie~~~~-------~~~~~~~~~~~~g~l~~~----~g~~~ir~~ 365 (387)
T d1vefa1 298 LWERAAELGPWFMEKLRAIPSPKI-REVRGMGLMVGLELKEK-------AAPYIARLEKEHRVLALQ----AGPTVIRFL 365 (387)
T ss_dssp THHHHHHHHHHHHHHHHTSCCTTE-EEEEEETTEEEEEESSC-------SHHHHHHHHHHHCEECEE----SSTTEEEEC
T ss_pred ccchHhhhhHHHHHHHHhcCCCce-EEEeecceEEEEEEeCC-------chHHHHHHHHHCCCeEEe----cCCCEEEEE
Confidence 345556677888888877522111 111 11 2455666432 344566666777876332 233456 77
Q ss_pred ecCCCCHHHHHHHHHHHHHHH
Q psy852 739 LQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ei~ 759 (891)
+...+|++|||.++++|++.+
T Consensus 366 Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 366 PPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHh
Confidence 766789999999999998765
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=96.13 E-value=0.17 Score=52.24 Aligned_cols=202 Identities=10% Similarity=0.018 Sum_probs=114.3
Q ss_pred EEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccchh-------h----
Q psy852 509 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTSCY-------R---- 574 (891)
Q Consensus 509 I~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~c~-------~---- 574 (891)
|++..-.......++.+.|.+++.||.++++..+.. . ......+++++ -.|++... +
T Consensus 99 v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~--------~-~~~~~~l~l~nP~NPtG~~~s~~~l~~~~~~~~~ 169 (334)
T d2f8ja1 99 SVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEV--------N-VGEGDVVFIPNPNNPTGHVFEREEIERILKTGAF 169 (334)
T ss_dssp EEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCCCC--------C-CCTTEEEEEESSCTTTCCCCCHHHHHHHHTTTCE
T ss_pred cccccccccccccchhccCCcccccccccccccccc--------c-cccceEEEecccccccceeecHHHhhccccceeE
Confidence 344444666777778889999999999887766411 1 11122333332 23444311 0
Q ss_pred -----------------hhcCCCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 575 -----------------KSQGIEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 575 -----------------~ldGi~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
....-+ ---+..++.|.++.| .-+|+++.. +..+......... +
T Consensus 170 ii~Dd~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~R~G~~~~~-~~~i~~l~~~~~~--------------~-- 231 (334)
T d2f8ja1 170 VALDEAYYEFHGESYVDFLKKYE-NLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVRLP--------------F-- 231 (334)
T ss_dssp EEEECTTGGGTCCCCGGGGGTCS-SEEEEEESTTTSSCTTTCEEEEEEC-HHHHHHHHHHSCT--------------T--
T ss_pred EeecccchhhcccccccccccCc-eEEEEecCccccchhhhhhhhcccc-hHHHHHHHHhhcc--------------c--
Confidence 000011 123456789988777 567877763 3322221111100 0
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHH
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLED 716 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~ 716 (891)
..+.... ...+..+. ..+-+.+..+...+.+++|.+.|+++ ++++. +++.+-+.+++. ....+.+.+.
T Consensus 232 ~~s~~~~-~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g~f~~~~~~-------~~~~~~~~~~ 299 (334)
T d2f8ja1 232 NVSYVSQ-MFAKVALD--HREIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFME-------KEEKERLLEH 299 (334)
T ss_dssp CSCHHHH-HHHHHHHH--THHHHHHHHHHHHHHHHHHHHHHHHH-TCEEC-CCCSSEEEEECC-------HHHHHHHHHH
T ss_pred ccchhhh-hhcccccc--cccchhhHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECC-------CCCHHHHHHH
Confidence 0111111 11222222 24556666777788888999999887 67775 445555666664 2245688899
Q ss_pred HHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 717 INASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 717 L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
|.++|++. .+. ...+ ++++ |.+|+++++++|++
T Consensus 300 L~~~GI~v-r~~----~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 300 LRTKNVAV-RSF----REGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp HHHTTEEC-EEE----TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred HHHCCCEE-CCC----CCeEEEEcC---CHHHHHHHHHHHhc
Confidence 99999764 222 2346 8876 67889999988874
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=96.13 E-value=0.06 Score=56.78 Aligned_cols=98 Identities=11% Similarity=0.009 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhC------CcEEEeeccc
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINAS------GRLHMVPASQ 730 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~------G~~~~s~s~~ 730 (891)
.-+++..+...+.++++.+.|++++......+.....++++++.. ...++.++|.++ |+.+.-++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~-------~~~~~~~~ll~e~~l~~~~v~v~pg~~f 351 (389)
T d2gb3a1 279 SFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVE-------DAEEFARWMLTDFNMDGETTMVAPLRGF 351 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSS-------CHHHHHHHHHHSCCBTTEEEECEEGGGG
T ss_pred hhcccccccccccchhhhhhhhhhccccccCCCceEEEEEeCCCC-------CHHHHHHHHHHhhhhhhCCEEEEeCccc
Confidence 345556667778888999999988655544445566778887543 345566666543 3333322221
Q ss_pred -----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 731 -----EQNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 731 -----~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
.+...+ +++. .+++++++.++.|.+.+..||
T Consensus 352 ~~~~~~~~~~iRis~~--~~~~~l~~a~~~L~~~lk~f~ 388 (389)
T d2gb3a1 352 YLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFC 388 (389)
T ss_dssp CSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHHHhh
Confidence 124456 8864 578999999999999888777
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=96.07 E-value=0.11 Score=54.48 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=59.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCc-ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNS-LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~-id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i 220 (891)
|++..-..+.....+...+..++.++.+.++. .+.+.+...+.+. +.+++.+--+|.||.+-+ +++|+++
T Consensus 114 V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~nP~NPtG~~~s~~~~~~i~~~ 187 (389)
T d2gb3a1 114 ILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINER------TKGIVLSNPCNPTGVVYGKDEMRYLVEI 187 (389)
T ss_dssp EEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEeCCCCccccccccccCccccccccccccccchhhhhhhhcccC------ccEEEeCCCCccccccchHHHHHHHHhh
Confidence 55555566666666666677888888876544 3444344333322 346666778999998755 7788899
Q ss_pred HHHcCCceeeeccccC
Q psy852 221 AKEFDVWLHVDGAYAG 236 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG 236 (891)
|++++++|..|-+|+.
T Consensus 188 a~~~~~~iI~De~y~~ 203 (389)
T d2gb3a1 188 AERHGLFLIVDEVYSE 203 (389)
T ss_dssp HHHTTCEEEEECTTTT
T ss_pred cccCCEEEEEeccccc
Confidence 9999999999999954
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=96.05 E-value=0.11 Score=55.51 Aligned_cols=160 Identities=9% Similarity=0.040 Sum_probs=92.1
Q ss_pred hhhhcCCCCccEEEEcCcccCCc-ccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHH
Q psy852 573 YRKSQGIEYADSFNVNVNKWLLT-AFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVI 651 (891)
Q Consensus 573 ~~~ldGi~~aDSIs~d~HK~L~~-P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L 651 (891)
.++. |++ .|-+++. |.++. -+++|+++.+++. .+.+ .+... ..|.. +-+..+.....+|
T Consensus 241 ~e~~-gv~-PDivt~g--K~l~gG~~p~~~v~~~~~i--~~~~--~~~~~-----------~~T~~-gnpl~~aaa~a~L 300 (404)
T d1z7da1 241 VHHY-NVK-PDVILLG--KALSGGHYPISAVLANDDI--MLVI--KPGEH-----------GSTYG-GNPLAASICVEAL 300 (404)
T ss_dssp GGGG-TCC-CSEEEEC--GGGGTTSSCCEEEEECHHH--HTTC--CTTCC-----------CCTTT-TCHHHHHHHHHHH
T ss_pred cccc-CCC-CCEEEEc--ccccCCCCCcccccchHHH--HccC--CCCCc-----------CcCCC-CCcchhhhhhhhh
Confidence 3443 564 6888664 66643 3567888887662 1111 11110 11111 2244445556667
Q ss_pred HHHHHhhHHHHHHH-HHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 652 RTYGLSGLQKYIRR-HCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 652 ~~lG~~G~~~~i~~-~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
+.+-.+.+.+.+.+ ...+.+.+.+.+++.+.+.-+.- .-.+..|.+... ...+..+..+|.+.|++. .++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg-~Gl~~~i~~~~~-----~~~~~~~~~~l~~~Gl~~-~~~-- 371 (404)
T d1z7da1 301 NVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRG-KGLLCAIEFKNE-----LVNVLDICLKLKENGLIT-RDV-- 371 (404)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-ETTEEEEEECTT-----TCCHHHHHHHHHHTTEEC-CEE--
T ss_pred hhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEe-eCcEEEEEEcCC-----cccHHHHHHHHHhCCeEE-ecC--
Confidence 76666666555543 44555666666666654432211 113556666543 223567888899999873 222
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
+..++ |.+...+|++|||++++.|++.++.+
T Consensus 372 -~~~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 372 -HDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp -TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 33456 77766789999999999999988644
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=96.00 E-value=0.11 Score=56.33 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=59.8
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++........+-+. -.++.+..++.++ +.+..++.+++.+ .+|.+=.-+|.+.-+-||+.|++
T Consensus 99 ~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~----~~~~~~~~~~~~t------~li~~EtpsNP~l~v~Di~~i~~ 168 (421)
T d2ctza1 99 NIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE----RPEEFLALTDEKT------RAWWVESIGNPALNIPDLEALAQ 168 (421)
T ss_dssp EEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC----CHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred ceeecCCcCCchhHHHHHHHhhccccceeccccc----CcchhccccCCCc------eEEEEcCCCcceeEecchHHHHH
Confidence 47887777655555442 2466777765322 2344444455443 48888889999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+.+.||.+|+
T Consensus 169 iA~~~g~~~vvDnT~a 184 (421)
T d2ctza1 169 AAREKGVALIVDNTFG 184 (421)
T ss_dssp HHHHHTCEEEEECGGG
T ss_pred HHHhcCCceEeccccc
Confidence 9999999999999995
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.19 Score=54.32 Aligned_cols=102 Identities=10% Similarity=-0.016 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-e-eEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-L-GLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
......+|..+-.+.+ +++..++.++|.++|+++.....+.+.+ . .+.+|.+... .....+...+.++|
T Consensus 317 ~aaa~a~L~~i~~~~~---~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~------~~~~~~~~~~~~~G 387 (429)
T d1s0aa_ 317 CAAANASLAILESGDW---QQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHP------VNMAALQKFFVEQG 387 (429)
T ss_dssp HHHHHHHHHHHHTCHH---HHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSC------BCHHHHHHHHHHTT
T ss_pred chhhhccccccccccc---cchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCc------ccHHHHHHHHHHCC
Confidence 3444555665555544 4555667778888876542222222211 1 2556666533 24567888899999
Q ss_pred cEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 722 ~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
++. . ..+ .++ +++..-+|++|||++++.|++.+
T Consensus 388 l~~-~---~~g-~~i~~~Ppl~it~~eid~~~~~l~~al 421 (429)
T d1s0aa_ 388 VWI-R---PFG-KLIYLMPPYIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp EEC-C---CBT-TEEEECCCTTCCHHHHHHHHHHHHHHT
T ss_pred cEE-E---ecC-CEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 772 2 223 345 77666789999999999998775
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.053 Score=58.34 Aligned_cols=152 Identities=13% Similarity=0.147 Sum_probs=85.2
Q ss_pred CCCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH
Q psy852 578 GIEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL 656 (891)
Q Consensus 578 Gi~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~ 656 (891)
|+. .|-+++ -|.+++= ++.|+++.+++ +.+.+. +... ..|.. +-+.......++|+.+-.
T Consensus 247 gv~-PDi~~~--gK~l~gG~~p~~av~~~~~--i~~~~~--~~~~-----------~~T~~-gnpl~~aaa~a~L~~i~~ 307 (404)
T d2byla1 247 NVR-PDIVLL--GKALSGGLYPVSAVLCDDD--IMLTIK--PGEH-----------FSTYG-GNPLGCRVAIAALEVLEE 307 (404)
T ss_dssp TCC-CSEEEE--CGGGGTTSSCCEEEEECHH--HHTTSC--TTSS-----------CCSST-TCHHHHHHHHHHHHHHHH
T ss_pred CCC-CCEEEE--CchhhCCCccceeeeechh--hhhccC--CCCC-----------CcCCC-cCHHHHHHHHHHHHHHHh
Confidence 443 487755 4665543 45688888755 222111 1110 01111 223344455667777766
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCe
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-RL-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQND 734 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~ 734 (891)
+.+.+ +..++.++|.+.|+++.. .++.+. .. .+..|.+.... +....++.++|.++|++.. ++ +..
T Consensus 308 ~~l~~---~~~~~g~~l~~~l~~l~~-~~i~~vRg~Gl~~~i~~~~~~----~~~~~~~~~~l~~~Gvl~~-~~---~~~ 375 (404)
T d2byla1 308 ENLAE---NADKLGIILRNELMKLPS-DVVTAVRGKGLLNAIVIKETK----DWDAWKVCLRLRDNGLLAK-PT---HGD 375 (404)
T ss_dssp TTHHH---HHHHHHHHHHHHHHTSCT-TTEEEEEEETTEEEEEECCCS----SCCHHHHHHHHHHTTEECE-EE---ETT
T ss_pred cCchh---hhhHhhHHHHHHHHhhcc-ccceeeeecccEEEEEEecCC----chhHHHHHHHHHhCCeEEe-cC---CCC
Confidence 66544 445567778887776422 111111 11 24455554321 2345678889999998732 21 233
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++ +++...+|++|||++++.|++.+.
T Consensus 376 ~i~l~PpL~it~~~id~~~~~l~~al~ 402 (404)
T d2byla1 376 IIRFAPPLVIKEDELRESIEIINKTIL 402 (404)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence 56 776667899999999999998764
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=95.78 E-value=0.13 Score=55.25 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=91.7
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccc--cEEEEEeCC
Q psy852 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFD--SSCLWVADR 607 (891)
Q Consensus 530 v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G~llvR~~ 607 (891)
++.+.+-.|-.+.+.++++.++...++..++.+|.+|..|...++-++ -+||-+.-|.-|++++.-+ .|++..+++
T Consensus 147 lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~--~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~ 224 (394)
T d1e5ea_ 147 IVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVD--FGVDVVVHSATKYINGHTDVVAGLICGKAD 224 (394)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGG--GTCSEEEEETTTTTTCSSCCCCEEEEECHH
T ss_pred EEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCCchh--cCCCEEEechhhhcCCCcccccccccchhh
Confidence 344443333344444444444433333457888899988887544222 1479999999999987654 677766544
Q ss_pred ccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC
Q psy852 608 YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 687 (891)
Q Consensus 608 ~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~ 687 (891)
....... .+++. . .+-...+...|..++ |.+-+.-++++..++|..+++.|+++|.++-+.
T Consensus 225 ~~~~~~~----~~~~~---------~----~G~~lsp~~a~ll~r--gl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~ 285 (394)
T d1e5ea_ 225 LLQQIRM----VGIKD---------I----TGSVISPHDAWLITR--GLSTLNIRMKAESENAMKVAEYLKSHPAVEKVY 285 (394)
T ss_dssp HHHHHHH----TCCCC---------C----CCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred HHHHHHH----HHHHH---------h----hCCCCChHHHHHHHh--hchhHHHHHHHHHHHHHHHHHHHhhcCCccEEe
Confidence 3221100 00100 0 011123455666654 889999999999999999999999999986442
Q ss_pred C------C-----------ceeEEEEEecC
Q psy852 688 D------V-----------RLGLVCFRLRS 700 (891)
Q Consensus 688 ~------~-----------~~~iV~Fr~~~ 700 (891)
- | .-++++|.+.+
T Consensus 286 yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~ 315 (394)
T d1e5ea_ 286 YPGFEDHEGHDIAKKQMRMYGSMITFILKS 315 (394)
T ss_dssp CTTCSSSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred CCCcccccchhhhhcccccCCCeeeeeccC
Confidence 1 2 13689998864
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=95.70 E-value=0.047 Score=58.51 Aligned_cols=87 Identities=10% Similarity=0.096 Sum_probs=65.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCC----------cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN----------SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN 213 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g----------~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp 213 (891)
.|++..-..++....+...+.+++.|+++.++ .++.+.+.+..... +.+++++-.+|.||.+-+
T Consensus 116 ~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~p~NPtG~~~s 189 (418)
T d2r5ea1 116 EVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------TKMIIINTPHNPLGKVMD 189 (418)
T ss_dssp EEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTT------EEEEEEESSCTTTCCCCC
T ss_pred ceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhcc------ccceecCCcCcccccccc
Confidence 36666667888888888888899999886543 46677776655433 357777889999999966
Q ss_pred H---HHHHHHHHHcCCceeeeccccC
Q psy852 214 L---AEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 214 l---~~I~~i~~~~~~~lHvDaA~GG 236 (891)
- .+|+++|++++++|..|.+|..
T Consensus 190 ~e~~~~l~~~a~~~~~~iI~De~y~~ 215 (418)
T d2r5ea1 190 RAELEVVANLCKKWNVLCVSDEVYEH 215 (418)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred HHHHHHHhhhhhcCCeeeecccchhh
Confidence 5 4577889999999999999943
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=95.61 E-value=0.044 Score=58.40 Aligned_cols=91 Identities=14% Similarity=0.034 Sum_probs=67.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|++.+-.-..-...+.+.|.+++.+|++ ..+..|.+.+.+.+.... ..+.+++.+..+|.||.+- .+++|++
T Consensus 126 Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iii~~p~NPTG~~~s~e~~~~l~~ 202 (401)
T d7aata_ 126 VYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP---EKSIILLHACAHNPTGVDPRQEQWKELAS 202 (401)
T ss_dssp EEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCC---CceEEEEecCCCCCccccCCHHHHHHHHH
Confidence 4444333333344456778899999974 456789999888876532 2356888888999999995 5568888
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++++++..|-+|.++.
T Consensus 203 ~a~~~~~~ii~De~Y~~l~ 221 (401)
T d7aata_ 203 VVKKRNLLAYFDMAYQGFA 221 (401)
T ss_dssp HHHHTTCEEEEEESCTTTT
T ss_pred HHhcceEEEEEeccchhhh
Confidence 9999999999999996543
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.30 E-value=0.98 Score=48.84 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=64.9
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----CCCc-EEeCCCceeEEEEEecCCcchhhhhhHHHHHHH
Q psy852 642 FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR----DPRF-EISNDVRLGLVCFRLRSENNLIADQNNRKLLED 716 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~----~~~~-eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~ 716 (891)
..+.....+|+.+-.+++. ++..++.++|.++|++ .|.+ .-+.- .-.++.|.+.. +....++...
T Consensus 349 ~~~aaa~a~l~~i~~~~l~---~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG-~Gl~~~ie~~~------~~~~~~i~~~ 418 (461)
T d1ohwa_ 349 SKNLLLAEVINIIKREDLL---SNAAHAGKVLLTGLLDLQARYPQFISRVRG-RGTFCSFDTPD------ESIRNKLISI 418 (461)
T ss_dssp HHHHHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-ETTEEEEECSS------HHHHHHHHHH
T ss_pred ccchhhcccchhhhhhhHH---HHHHHHHHHHHHHHHHHHhhCCCceEEeee-eeEEEEEEcCC------HHHHHHHHHH
Confidence 3344455666666666544 4445566666666654 3322 11110 11256677743 4466789999
Q ss_pred HHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 717 INASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 717 L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+.++|++. .++ +..++ |.+..-+|++|||.+++.|++.+.
T Consensus 419 ~~~~Gll~-~~~---~~~~ir~~PpL~it~~eid~~~~~l~~~l~ 459 (461)
T d1ohwa_ 419 ARNKGVML-GGC---GDKSIRFRPTLVFRDHHAHLFLNIFSDILA 459 (461)
T ss_dssp HHHTTEEC-EEE---TTTEEECCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHCCeEE-eeC---CCCEEEEeCCcCCCHHHHHHHHHHHHHHHh
Confidence 99999873 222 33456 766667899999999999998874
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.067 Score=57.29 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=99.7
Q ss_pred eEEEec--CCCCCC-cCHHHHHHHHHhhhhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccc--cEEEE
Q psy852 529 RLKILE--PDDKNS-LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFD--SSCLW 603 (891)
Q Consensus 529 ~v~~Vp--~d~~G~-mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G~ll 603 (891)
+++.+. .++..+ +|++.+.+..++ ..++.+|.+|..|...++-++ -+||-+.-|.-|++.+--+ .|+++
T Consensus 137 ~~v~~EspsNP~l~v~Di~~i~~ia~~----~g~~~vVDNT~atP~~~~Pl~--~GaDiVvhS~TKyi~Ghsdv~~G~vv 210 (384)
T d1cs1a_ 137 KLVLVESPSNPLLRVVDIAKICHLARE----VGAVSVVDNTFLSPALQNPLA--LGADLVLHSCTKYLNGHSDVVAGVVI 210 (384)
T ss_dssp SEEEEECSCTTTCCCCCHHHHHHHHHH----TTCEEEEECTTTCTTTCCGGG--GTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred cEEEEeccccccceeccHHHHhhhhhh----cCcEEEEeccccCcccccccc--cCCCEEEEccccccccCCCccccccc
Confidence 344444 344433 566666665554 346889999998877544332 2489999999999987654 56666
Q ss_pred EeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCc
Q psy852 604 VADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRF 683 (891)
Q Consensus 604 vR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~ 683 (891)
.+++......... .. .+ +-...+...|..++ |.+-+.-++++..++|..+++.|+++|.+
T Consensus 211 ~~~~~~~~~~~~~----~~----------~~----G~~~~p~~a~ll~r--gL~TL~lRm~~~~~nA~~lA~~L~~hp~V 270 (384)
T d1cs1a_ 211 AKDPDVVTELAWW----AN----------NI----GVTGGAFDSYLLLR--GLRTLVPRMELAQRNAQAIVKYLQTQPLV 270 (384)
T ss_dssp ESSHHHHHHHHHH----HH----------HH----TCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred CCchhhhhhhhhh----hh----------hh----hhccccccHHHHhh--ccchhHHHHHHHHHHHHHHHHhcccCCce
Confidence 6665432211000 00 00 00122455677665 88889999999999999999999999998
Q ss_pred EEeCCC-----------------ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 684 EISNDV-----------------RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 684 eil~~~-----------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+-+.-| ..++++|.+.+. .+...++++.|+
T Consensus 271 ~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~-----~~~a~~f~~~L~ 317 (384)
T d1cs1a_ 271 KKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-----EQTLRRFLGGLS 317 (384)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-----HHHHHHHHHTCS
T ss_pred eeeeeccccchhHHHHHHhhcCCCcceeEEeecch-----HHHHHHHHHhCC
Confidence 654322 146999999754 223345555553
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=95.23 E-value=0.05 Score=57.09 Aligned_cols=85 Identities=9% Similarity=-0.002 Sum_probs=58.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|++..-..+.....+...+.....++++ ..+.+|.+.++...... +.+++.+--+|.||.+- .+++|++
T Consensus 115 vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~nP~NPTG~~~s~~~~~~i~~ 188 (375)
T d1o4sa_ 115 VIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNNPTGVVYRREFLEGLVR 188 (375)
T ss_dssp EEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEEccCccccchhhhhccccccccccccccccccchhHHHHHhhccC------ccEEEEeCCCCCccCCCCHHHHHHHHH
Confidence 3433334444555555666677777765 45667788777654443 34666777799999995 4566778
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|++++++|-.|-+|+
T Consensus 189 ~a~~~~~~ii~De~y~ 204 (375)
T d1o4sa_ 189 LAKKRNFYIISDEVYD 204 (375)
T ss_dssp HHHHHTCEEEEECTTT
T ss_pred hHHHcCCceehHhhhc
Confidence 8999999999999884
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=95.17 E-value=0.059 Score=57.97 Aligned_cols=134 Identities=19% Similarity=0.276 Sum_probs=84.4
Q ss_pred CccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccc--cEEEEEeCCccchhh-hccCCCccccCCCCCccccCC
Q psy852 558 YIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSA-LVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 558 ~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~-l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
.++.+|.+|..|..+++-++ -+||-+.-|.-|++++--+ .|++..+++. +.+. +.. ++. .+
T Consensus 178 gi~~vvDnT~atP~~~~Pl~--~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~-~~~~r~~~----~~~---------~~ 241 (397)
T d1y4ia1 178 GALLVVDNTFMSPYCQQPLQ--LGADIVVHSVTKYINGHGDVIGGIIVGKQEF-IDQARFVG----LKD---------IT 241 (397)
T ss_dssp TCEEEEECTTTCTTTCCGGG--GTCSEEEEETTTTTTCSSCCCCEEEEECHHH-HHHHHHTH----HHH---------TT
T ss_pred CceEEecCcccCcccCcchh--cCCCEEEEehhhhcCCCcceeeeccCCCHHH-HHHHHHHH----HHh---------Cc
Confidence 36778888888877544322 1378999999999876643 5666665442 2110 000 000 00
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr 697 (891)
+-...+...|..++ |.+-+.-++++..++|..+++.|+++|.++-+.-| ..++++|.
T Consensus 242 ----G~~l~p~~a~l~~r--gl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~ 315 (397)
T d1y4ia1 242 ----GGCMSPFNAWLTLR--GVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE 315 (397)
T ss_dssp ----CCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEE
T ss_pred ----CCcCCHHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEE
Confidence 11123456677765 78888999999999999999999999998654222 24799999
Q ss_pred ecCCcchhhhhhHHHHHHHHH
Q psy852 698 LRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 698 ~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+++. .+...++++.|+
T Consensus 316 ~~~~-----~~~~~~f~~~L~ 331 (397)
T d1y4ia1 316 IAGG-----LEAGRRMINSVE 331 (397)
T ss_dssp ETTH-----HHHHHHHHHTCS
T ss_pred ecCC-----HHHHHHHHHcCC
Confidence 8753 222345555554
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.10 E-value=0.17 Score=54.28 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=99.4
Q ss_pred cCceEEEecCCCCCCc---CHHHHHHHHHhhhhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccc--cE
Q psy852 526 AFVRLKILEPDDKNSL---RGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFD--SS 600 (891)
Q Consensus 526 ~gv~v~~Vp~d~~G~m---D~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G 600 (891)
...+++.+.+-.|=.+ |++.+.+.-++ ..++++|.+|.+|...++-++ -+||-+.-|.-|++++.-+ .|
T Consensus 152 ~~t~~v~~EspsNP~l~v~Di~~ia~ia~~----~g~~~vVDnT~atP~~~~Pl~--~GaDiVihS~TKy~~Ghsdv~~G 225 (398)
T d1qgna_ 152 KKVNLFFTESPTNPFLRCVDIELVSKLCHE----KGALVCIDGTFATPLNQKALA--LGADLVLHSATKFLGGHNDVLAG 225 (398)
T ss_dssp SCEEEEEEESSCTTTCCCCCHHHHHHHHHH----TTCEEEEECTTTCTTTCCTTT--TTCSEEEECTTTTTTCSSSCCCE
T ss_pred ccceEEEccCccccccccchHHHHHHHHhh----cCCEEEecceeeccccCCchh--hCCCEEEEechhhcCcccceeeh
Confidence 3445555555444444 55555444443 347899999999887554322 1389999999999998855 34
Q ss_pred EEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC
Q psy852 601 CLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD 680 (891)
Q Consensus 601 ~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~ 680 (891)
+ ++.+......... +.. .+ +--..+...|..++ |.+-+.-++++..++|..+++.|+++
T Consensus 226 ~-v~~~~~~~~~~~~----~~~----------~~----G~~l~p~~a~ll~r--gl~TL~lRm~~~~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 226 C-ISGPLKLVSEIRN----LHH----------IL----GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAH 284 (398)
T ss_dssp E-EEECHHHHHHHHH----HHH----------HH----CCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTC
T ss_pred h-hcchhhhhhhhhh----hcc----------cC----CCcCCHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4 4444433322110 000 00 11123455676665 78899999999999999999999999
Q ss_pred CCcEEeCCC-----------------ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 681 PRFEISNDV-----------------RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 681 ~~~eil~~~-----------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
|.++-+.-| ..++++|.+.+. .+...++++.|.
T Consensus 285 p~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~-----~~~a~~f~~~L~ 334 (398)
T d1qgna_ 285 PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-----LLTTAKFVDALK 334 (398)
T ss_dssp TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-----HHHHHHHHHHCS
T ss_pred CCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCC-----HHHHHHHHHcCC
Confidence 998743211 136999998754 233445666664
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.03 E-value=0.11 Score=55.66 Aligned_cols=165 Identities=14% Similarity=0.113 Sum_probs=102.8
Q ss_pred CceEEEecCCCC--CC-cCHHHHHHHHHhhhhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccc--cEE
Q psy852 527 FVRLKILEPDDK--NS-LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFD--SSC 601 (891)
Q Consensus 527 gv~v~~Vp~d~~--G~-mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G~ 601 (891)
.-+++.+.+-.| .+ .|+..+.+...+...+..++++|.+|.+|...++-++ -+||-+.-|.=|++++.-+ .|+
T Consensus 138 ~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~--~GADiVvhS~TKyi~GhsDv~~G~ 215 (393)
T d1n8pa_ 138 NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLN--FGADIVVHSATKYINGHSDVVLGV 215 (393)
T ss_dssp SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGG--GTCSEEEEETTTTTTCSSCCCCEE
T ss_pred hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCchh--hCCCEEEEccccccCCCCccccce
Confidence 335666655444 33 5666666666554434567899999999988654332 1489999999999988754 566
Q ss_pred EEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-
Q psy852 602 LWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD- 680 (891)
Q Consensus 602 llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~- 680 (891)
+..++...... +...... .+-...+...|..++ |.+-+.-++++..++|+.+++.|++.
T Consensus 216 v~~~~~~~~~~-l~~~~~~-----------------~G~~~~p~~a~ll~r--gl~Tl~lR~~~~~~nA~~lA~~L~~~~ 275 (393)
T d1n8pa_ 216 LATNNKPLYER-LQFLQNA-----------------IGAIPSPFDAWLTHR--GLKTLHLRVRQAALSANKIAEFLAADK 275 (393)
T ss_dssp EEESCHHHHHH-HHHHHHH-----------------HCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred eeecchhHHHH-HHHHHhh-----------------cCCCCChHHHHHHHh--CCcchhhHHHHHHHHHHHHHHHHHhcc
Confidence 65554432211 1100000 011122345666654 88899999999999999999999875
Q ss_pred CCcEEeCCC-------------------ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 681 PRFEISNDV-------------------RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 681 ~~~eil~~~-------------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+.++-+.-| ..++++|.+++. .+...++.+.|+
T Consensus 276 ~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~-----~~~~~~f~~~l~ 327 (393)
T d1n8pa_ 276 ENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-----AEAASKFASSTR 327 (393)
T ss_dssp TTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-----HHHHHHHHHHCS
T ss_pred CcEEEEecccccccccchhhhhccccCCCCceEEEEEeCC-----HHHHHHHHHhCC
Confidence 666654211 135999999754 223445666654
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.069 Score=56.38 Aligned_cols=84 Identities=8% Similarity=0.071 Sum_probs=61.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA---EIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~~i 220 (891)
|++..-..+.....+...+..+..++.++ .+.+|+++|++.+.+. +.+++.+--+|.||++-+.+ +|+++
T Consensus 114 vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~v~~~~~~~~l~~~ 187 (382)
T d1u08a_ 114 VICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSER------TRLVILNTPHNPSATVWQQADFAALWQA 187 (382)
T ss_dssp EEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhccC------ccEEEECCCCcccccccccccchhhhhh
Confidence 55555566666666666666777777764 4678999998876654 34667777899999997765 55566
Q ss_pred HHHcCCceeeeccc
Q psy852 221 AKEFDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~~~~lHvDaA~ 234 (891)
|+++++++..|..+
T Consensus 188 ~~~~~~~ii~d~~~ 201 (382)
T d1u08a_ 188 IAGHEIFVISDEVY 201 (382)
T ss_dssp HTTSCCEEEEECTT
T ss_pred hccccceeeeecch
Confidence 77888888888887
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=94.89 E-value=0.075 Score=55.75 Aligned_cols=152 Identities=12% Similarity=0.126 Sum_probs=93.2
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccC
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVD 617 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~ 617 (891)
.+.+.++++.++...++..++++|.+|.+|...++-++ -+||-+.-|.-|++++--+ .|+++.++.........
T Consensus 96 ~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~--~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~-- 171 (331)
T d1pffa_ 96 TLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLD--LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ-- 171 (331)
T ss_dssp TCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGG--GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT--
T ss_pred ccccccchhhhhhhhcccCceEEeeccccccccccccc--cCCCEEEecchhhcCCCCccccccccccccchhhhhhh--
Confidence 33334444433332233457888999998877554332 1279999999999987644 47666654432211110
Q ss_pred CCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEe-CC-----C--
Q psy852 618 PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS-ND-----V-- 689 (891)
Q Consensus 618 ~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil-~~-----~-- 689 (891)
.++. ..+-...+...|..++ |.+-+..++++..++|..+++.|+++|.++-+ -| |
T Consensus 172 --~~~~-------------~~G~~l~p~~a~ll~r--gl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~ 234 (331)
T d1pffa_ 172 --GIKD-------------ITGAIISPHDAWLITR--GTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGH 234 (331)
T ss_dssp --CCCC-------------CCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTH
T ss_pred --hhhh-------------ccCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHH
Confidence 0000 0011223456677766 88889999999999999999999999988543 21 1
Q ss_pred ---------ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 690 ---------RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 690 ---------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
..++++|.+.+. +...++++.|+
T Consensus 235 ~~~~~~~~~~g~l~sf~l~~~------~~~~~f~d~l~ 266 (331)
T d1pffa_ 235 EIAKKQMKMFGSMIAFDVDGL------EKAKKVLDNCH 266 (331)
T ss_dssp HHHHHHCSSCCSEEEEECSSH------HHHHHHHHTCS
T ss_pred HHHhhcccccCcccceeeccH------HHHHHHHHhCC
Confidence 147999999642 23345555554
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.17 Score=53.20 Aligned_cols=244 Identities=8% Similarity=0.009 Sum_probs=130.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~m 541 (891)
.|+ +|+|+++++..++.+.-. +.-.|++..-..+.....+...+..+..++.++ +..+
T Consensus 89 ~I~--vt~G~~~al~~~~~~l~~-------------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 147 (382)
T d1u08a_ 89 DIT--VTAGATEALYAAITALVR-------------------NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRV 147 (382)
T ss_dssp TEE--EESSHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCC
T ss_pred eEE--eccchHHHHHHHHhhccc-------------------ccceEEEecccccchhhhhhhccccceecccccccccC
Confidence 356 688999998877755321 112345555555566666667777777777754 4678
Q ss_pred CHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh--------------hcC---CCC------c--
Q psy852 542 RGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK--------------SQG---IEY------A-- 582 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~--------------ldG---i~~------a-- 582 (891)
|+++|++++.+.++ .+++++ -.|++. |.++ .++ ... .
T Consensus 148 d~~~l~~~~~~~~~----~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (382)
T d1u08a_ 148 DWQEFAALLSERTR----LVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER 223 (382)
T ss_dssp CHHHHHHHCCTTEE----EEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTT
T ss_pred CHHHHhhhhccCcc----EEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCc
Confidence 99999888776421 233332 345554 1110 000 000 0
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhH
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGL 659 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~ 659 (891)
--+..+..|..+.| .-+|+++..+. .+.. +.....+. ....+ ...++++...+ +.+-+
T Consensus 224 ~i~~~s~SK~~~~pG~RiG~~v~~~~-~~~~-~~~~~~~~-------------~~~~~----~~~q~a~~~~l~~~~~~~ 284 (382)
T d1u08a_ 224 AVAVSSFGKTYHMTGWKVGYCVAPAP-ISAE-IRKVHQYL-------------TFSVN----TPAQLALADMLRAEPEHY 284 (382)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEECCHH-HHHH-HHHHHHHH-------------TSSCC----HHHHHHHHHHHHHCTHHH
T ss_pred EEEEeeccccccCCcccchhhhccch-hHHH-HHhhhccc-------------ccccc----cccccccccccccchHHH
Confidence 13455567777666 66888765332 2211 11000000 00001 12222222222 33445
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHH-HhCCcEEEeeccc----cCCe
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDI-NASGRLHMVPASQ----EQND 734 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L-~~~G~~~~s~s~~----~g~~ 734 (891)
.++.+...+.++.+.+.++. .++.+..+...--++++++... .....++..+| .+.|++++-++.. .+..
T Consensus 285 ~~~~~~~~~~~~~l~~~~~~-~g~~~~~p~gg~~~~~~~~~~~----~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~ 359 (382)
T d1u08a_ 285 LALPDFYRQKRDILVNALNE-SRLEILPCEGTYFLLVDYSAVS----TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHK 359 (382)
T ss_dssp HTHHHHHHHHHHHHHHHTTS-SSCEECCCCBSSEEEEECTTTC----CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSC
T ss_pred HHHHHHHHhhhhhhhhhhcc-CCcEEecCCceEEEEEecCCCC----CCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCC
Confidence 55666666677777777765 5777765443445667775321 12345677766 4578876544433 2344
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~e 757 (891)
.+ +++. +++|++++.++.|++
T Consensus 360 ~~Ris~~--~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 360 LIRLCFA--KKESTLLAAAERLRQ 381 (382)
T ss_dssp EEEEECC--SCHHHHHHHHHHHTT
T ss_pred EEEEEEe--CCHHHHHHHHHHHhC
Confidence 56 8874 477888888776654
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.065 Score=56.86 Aligned_cols=91 Identities=10% Similarity=-0.010 Sum_probs=64.8
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++.+-.-..-.-.+...|.+++.++.+ +.+..+...+++.+.... ..+.+++.+..+|.||.+-+ +++|++
T Consensus 123 Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~P~NPTG~~~s~e~~~~l~~ 199 (396)
T d2q7wa1 123 VWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ---AGDVVLFHGCCHNPTGIDPTLEQWQTLAQ 199 (396)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHhc---cCcEEEEecCCcCCcCeecCHHHHHHHHH
Confidence 5555444333344446778899999875 345567777777665443 23568888888999999855 558888
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++++++..|-+|.++.
T Consensus 200 la~~~~~~ii~De~Y~~l~ 218 (396)
T d2q7wa1 200 LSVEKGWLPLFDFAYQGFA 218 (396)
T ss_dssp HHHHHTCEEEEEESCTTSS
T ss_pred HHhcCCeEEEEeccccccc
Confidence 9999999999999996543
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=94.84 E-value=0.83 Score=48.80 Aligned_cols=112 Identities=10% Similarity=-0.021 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh----ccCCCcEEeCCCce-eEEEEEecC--CcchhhhhhHHHHHHH
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKV----RRDPRFEISNDVRL-GLVCFRLRS--ENNLIADQNNRKLLED 716 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L----~~~~~~eil~~~~~-~iV~Fr~~~--~~~~~~d~ln~~L~~~ 716 (891)
+.....++..+-.+.+.+.+ .++.+++.+.+ .+.+.+.-+. .. .+.++.+.. ...+..+....++.+.
T Consensus 309 ~aaa~a~l~~i~~~~~~~~~---~~~g~~l~~~l~~~~~~~~~i~~vr--G~Glm~~ie~~~~~~~~~~~~~~~~~i~~~ 383 (431)
T d1zoda1 309 AAVGLRVLDVVQRDGLVARA---NVMGDRLRRGLLDLMERFDCIGDVR--GRGLLLGVEIVKDRRTKEPADGLGAKITRE 383 (431)
T ss_dssp HHHHHHHHHHHHHTTHHHHH---HHHHHHHHHHHHHHHHHCTTEEEEE--EETTEEEEEEEEETTTTEECTTHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHH---HHHHHHHhhhhhhhhhcCCCeEEEe--ecceEEEEEEecCCcccCccHHHHHHHHHH
Confidence 33445556666666554444 44444444444 3333221111 11 244444421 1122234567788999
Q ss_pred HHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 717 INASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 717 L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+.+.|...-.........++ +++..-+|++|||+++++|++.++
T Consensus 384 ~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~ 428 (431)
T d1zoda1 384 CMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 428 (431)
T ss_dssp HHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 99999752111111223456 777777899999999999998773
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=94.55 E-value=0.26 Score=51.69 Aligned_cols=91 Identities=9% Similarity=0.017 Sum_probs=65.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|+++.-.-+.-...+...|.+++.++.+ ..+..+.+++++.+..... ...+++.+..+|.||.+-+ +++|++
T Consensus 120 V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~p~NPTG~~~s~e~~~~l~~ 196 (394)
T d2ay1a_ 120 VFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK---GDMVLLHGCCHNPTGANLTLDQWAEIAS 196 (394)
T ss_dssp EEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCT---TCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhccc---CcEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 5555444344444446667789988874 4566777877776665432 2467778889999999965 678889
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++++++..|-+|+++.
T Consensus 197 la~~~~~~ii~De~Y~~l~ 215 (394)
T d2ay1a_ 197 ILEKTGALPLIDLAYQGFG 215 (394)
T ss_dssp HHHHHTCEEEEEECCTTSS
T ss_pred HhhcceEEEEEeccchhhc
Confidence 9999999999999996654
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=94.54 E-value=0.083 Score=56.70 Aligned_cols=135 Identities=18% Similarity=0.196 Sum_probs=84.1
Q ss_pred CccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCccc--ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 558 YIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAF--DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 558 ~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~--g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
.++++|.+|..|...++-++ -+||-+.-|..|++++-- -.|++..++....+-.+. .++.
T Consensus 174 g~~~vvDnT~atP~~~~Pl~--~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~----~~~~------------ 235 (392)
T d1gc0a_ 174 GATVVVDNTYCTPYLQRPLE--LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ----GLKD------------ 235 (392)
T ss_dssp TCEEEEECTTTHHHHCCGGG--GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT----HHHH------------
T ss_pred CCEEEEecCccCccccChHH--hCCCEEEEecceeecCCcccccccccchhHHHHHHHHH----HHHH------------
Confidence 35777778877776544322 248999999999997653 356766665422110000 0000
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEEe
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFRL 698 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr~ 698 (891)
..+-...+...|..++ |.+-+.-++++..++|+.+++.|+++|.++-+.-| ..++++|.+
T Consensus 236 -~~G~~~~p~da~ll~r--gl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l 312 (392)
T d1gc0a_ 236 -MTGAVLSPHDAALLMR--GIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFEL 312 (392)
T ss_dssp -HTCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEE
T ss_pred -ccCCcCChhhHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEE
Confidence 0011122455676654 88899999999999999999999999988743211 137999999
Q ss_pred cCCcchhhhhhHHHHHHHHH
Q psy852 699 RSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 699 ~~~~~~~~d~ln~~L~~~L~ 718 (891)
++. .....++++.|+
T Consensus 313 ~~~-----~~~~~~f~~~L~ 327 (392)
T d1gc0a_ 313 KGG-----IGAGRRFMNALQ 327 (392)
T ss_dssp TTH-----HHHHHHHHHHCS
T ss_pred eCC-----HHHHHHHHHhCC
Confidence 642 123345666664
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.092 Score=56.13 Aligned_cols=88 Identities=15% Similarity=0.071 Sum_probs=60.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC------------CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD------------DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD 212 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d------------~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD 212 (891)
|++..-........+...+.+++.++.+ .+..+|.+++.....+. +.+++.+..+|.||++-
T Consensus 115 vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~i~~~~p~NPtG~~~ 188 (418)
T d1w7la_ 115 VIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR------TKALVLNTPNNPLGKVF 188 (418)
T ss_dssp EEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTT------EEEEEEESSCTTTCCCC
T ss_pred eeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhcccccc------ccceeccCcCCcccccc
Confidence 4444444444445556666677777653 23456766666544433 45778888899999884
Q ss_pred ---CHHHHHHHHHHcCCceeeeccccCCc
Q psy852 213 ---NLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 213 ---pl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
.+++|+++|+++++++-.|.+|..+.
T Consensus 189 s~~~~~~i~~~a~~~~v~vI~De~Y~~l~ 217 (418)
T d1w7la_ 189 SREELELVASLCQQHDVVCITDEVYQWMV 217 (418)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred cHHHHHHHHHHHHhcCCCchhhhhhHHhh
Confidence 56688888999999999999995543
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.23 E-value=0.11 Score=55.56 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=92.8
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCC
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDP 618 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~ 618 (891)
.|++.+.+.-++ ..++++|.+|.+|..+++-++ -+||-+.-|.-|++++--+ .|++..+++..... +...
T Consensus 150 ~Di~~i~~iA~~----~g~~~vVDnT~atP~~~~Pl~--~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~-~~~~- 221 (380)
T d1ibja_ 150 SDIRKISEMAHA----QGALVLVDNSIMSPVLSRPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE-VYFL- 221 (380)
T ss_dssp CCHHHHHHHHHT----TTCEEEEECTTTCTTTCCGGG--TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHH-HHHH-
T ss_pred ccHHHHHHHHHH----cCCeEEeeccccccccccccc--cCCCEEEecccceeccccCccccccccchhhHHHH-HHhh-
Confidence 455555554433 346888999998877555443 2489999999999987644 56666665432221 1100
Q ss_pred CccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC---------
Q psy852 619 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--------- 689 (891)
Q Consensus 619 ~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--------- 689 (891)
. ...+....+...|..++ |.+-+..++++..++|+.+++.|+++|.++-+.-|
T Consensus 222 ---~-------------~~~G~~l~p~~a~ll~r--gl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~ 283 (380)
T d1ibja_ 222 ---Q-------------NSEGSGLAPFDCWLCLR--GIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHH 283 (380)
T ss_dssp ---H-------------HHTTCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHH
T ss_pred ---c-------------cccCCcCCHHHHHHHHh--cchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCcccc
Confidence 0 00011223455677765 88999999999999999999999999988754211
Q ss_pred --------ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 690 --------RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 690 --------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
..++++|...+ .....++.+.|+
T Consensus 284 ~a~~~~~~~g~~~s~~~~~------~~~a~~f~d~l~ 314 (380)
T d1ibja_ 284 LHFSQAKGAGSVFSFITGS------VALSKHLVETTK 314 (380)
T ss_dssp HHTTTCSCCCSEEEEECSC------HHHHHHHHHHCS
T ss_pred ccccccccccccccccccH------HHHHHHHHHhCC
Confidence 23688887643 223455666654
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=93.91 E-value=1.1 Score=47.19 Aligned_cols=250 Identities=9% Similarity=0.027 Sum_probs=133.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC----
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK---- 538 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~---- 538 (891)
+|+ +|.|+++++..++.+.- .+.-.|++..-..+.....+.+.+.+++.||++++
T Consensus 92 ~I~--it~G~~~al~~~~~~l~-------------------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 150 (418)
T d2r5ea1 92 EVL--VTVGAYEALYATIQGHV-------------------DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGG 150 (418)
T ss_dssp SEE--EESHHHHHHHHHHHHHC-------------------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSS
T ss_pred eEE--EcCCCchhhhhhhhhcc-------------------ccccceeccccccchhhHHHHHcCCeEEEEEeccccccc
Confidence 466 68888888877765521 12234666666788888888888999998887544
Q ss_pred ------CCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh--------------hcC------
Q psy852 539 ------NSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK--------------SQG------ 578 (891)
Q Consensus 539 ------G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~--------------ldG------ 578 (891)
...+.+.+.++..... ..++++. -.|++. |.++ .++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~ 226 (418)
T d2r5ea1 151 TISSADWVLDNNELEALFNEKT----KMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRI 226 (418)
T ss_dssp CEEGGGEECCHHHHHHHCCTTE----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred chhhhhhhhhHHHHhhhhhccc----cceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccc
Confidence 3567777776655421 2333332 345554 2221 011
Q ss_pred --CCC--cc-EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHH
Q psy852 579 --IEY--AD-SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIR 652 (891)
Q Consensus 579 --i~~--aD-SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~ 652 (891)
+.. -- -...+..|.++.| .=+|+++..+. .+........ ......+. ..++++..
T Consensus 227 ~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~-~i~~~~~~~~--------------~~~~~~~~----~~q~a~~~ 287 (418)
T d2r5ea1 227 CTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEA-LLKNLQMVHQ--------------NCVYTCAT----PIQEAIAV 287 (418)
T ss_dssp GGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHH-HHHHHHHHHT--------------TTTCSCCH----HHHHHHHH
T ss_pred cccccccceeeeeecCCccccCCCcccccccccch-hhhhhhhccc--------------cccccccc----chhhhccc
Confidence 000 01 2233677777656 55777655332 1111100000 00111111 11222222
Q ss_pred HHH---------HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcc------hhhhhhHHHHHHHH
Q psy852 653 TYG---------LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENN------LIADQNNRKLLEDI 717 (891)
Q Consensus 653 ~lG---------~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~------~~~d~ln~~L~~~L 717 (891)
.+- ..-+.+..++....++++.+.|++. ++++..+....-+..++.+... ........++.+.|
T Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 366 (418)
T d2r5ea1 288 GFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWM 366 (418)
T ss_dssp HHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHH
Confidence 221 1224455556677788899999886 7776554444455566643210 00122345677776
Q ss_pred Hh-CCcEEEeeccc-------cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 718 NA-SGRLHMVPASQ-------EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 718 ~~-~G~~~~s~s~~-------~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+ .|++++-++.. .+...+ +++. .++++|+++++.|++..
T Consensus 367 l~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~--~~~e~l~~a~~rl~~~l 415 (418)
T d2r5ea1 367 TKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWK 415 (418)
T ss_dssp HHHHSEECBCGGGGSCGGGHHHHTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred HHHCCEEEeCchhhCCCCCccCCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 54 58775443322 123456 8874 47899999999888765
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.45 Score=50.75 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=88.0
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCC
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDP 618 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~ 618 (891)
.|++++.+...+. ...++++|.+|.+|....+-++ -+||-+.-|.-||+++--+ .|+++ .+...........
T Consensus 160 ~Di~~i~~~a~~~--~~g~~~vVDnT~atP~~~~Pl~--~GaDivvhS~TKy~~GhsdvlgG~vv-~~~~~~~~~~~~~- 233 (391)
T d1cl1a_ 160 HDVPAIVAAVRSV--VPDAIIMIDNTWAAGVLFKALD--FGIDVSIQAATKYLVGHSDAMIGTAV-CNARCWEQLRENA- 233 (391)
T ss_dssp CCHHHHHHHHHHH--CTTCEEEEECTTTTTTSSCGGG--GTCSEEEEETTTTTTCSSSCCCEEEE-ECTTTHHHHHHHH-
T ss_pred cccHHHHHHHHhc--cCCcEEEEeccccchhhhcccc--cccceEEeecchhcccccccccccee-ccccccccchhhh-
Confidence 4666555543332 1246789999999987554333 2589999999999988765 45554 4443222211000
Q ss_pred CccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC---------
Q psy852 619 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--------- 689 (891)
Q Consensus 619 ~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--------- 689 (891)
.. .+-...+...|..++ |.+-+.-++++..++|..+++.|+++|.++-+.-|
T Consensus 234 ~~-----------------~G~~~~p~~a~ll~r--gl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~ 294 (391)
T d1cl1a_ 234 YL-----------------MGQMVDADTAYITSR--GLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 294 (391)
T ss_dssp HH-----------------TTCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHH
T ss_pred hc-----------------ccccCCchhhhhhhc--cchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHH
Confidence 00 011123455676655 88999999999999999999999999998765322
Q ss_pred --------ceeEEEEEecCC
Q psy852 690 --------RLGLVCFRLRSE 701 (891)
Q Consensus 690 --------~~~iV~Fr~~~~ 701 (891)
..++++|.+.+.
T Consensus 295 ~~~~~~~g~gg~~sf~l~~~ 314 (391)
T d1cl1a_ 295 FWKRDFTGSSGLFSFVLKKK 314 (391)
T ss_dssp HHHHHCSCCCSEEEEEESSC
T ss_pred HHhhccCCCCcceeeeecCC
Confidence 136899999754
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=93.55 E-value=1.2 Score=45.94 Aligned_cols=89 Identities=9% Similarity=0.093 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHH-HHhCCcEEEeeccccCCeEE-E
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLED-INASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~-L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
....+......+.+.+.|++. ++++..+.....+++++++. ..++..+ |.+.|++++-+........+ +
T Consensus 283 ~~~~~~~~~r~~~~~~~l~~~-g~~~~~p~gg~f~~~~~~~~--------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRi 353 (375)
T d1o4sa_ 283 SYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVRGD--------DVKFCERLLEEKKVALVPGSAFLKPGFVRL 353 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECSSC--------HHHHHHHHHHHHCEECEEGGGGTCTTEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHhc-CceEecCCccEEEEEECCCC--------HHHHHHHHHHhCCEEEEEccccCCCCeEEE
Confidence 334445556677777778774 67775544445677777532 3344555 45679887766665555667 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~ 759 (891)
++. +++++++++++.|++.+
T Consensus 354 s~~--~~~e~l~~al~rl~~~l 373 (375)
T d1o4sa_ 354 SFA--TSIERLTEALDRIEDFL 373 (375)
T ss_dssp ECC--SCHHHHHHHHHHHHHHH
T ss_pred EEc--CCHHHHHHHHHHHHHHh
Confidence 875 57888998888887765
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=3.6 Score=43.34 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=44.5
Q ss_pred eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCcc
Q psy852 165 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSSF 239 (891)
Q Consensus 165 ~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~~ 239 (891)
.+..+|.+ |+++|++.+.... ...|++--...+.|.+-| +.+|.++|+++|+.+.+|=++-|+..
T Consensus 168 ~~~~~p~~-----d~~~l~~~l~~~~-----iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR 236 (404)
T d2byla1 168 GFDIIPYN-----DLPALERALQDPN-----VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR 236 (404)
T ss_dssp TEEEECTT-----CHHHHHHHHTSTT-----EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred CeeEeccc-----CHHHHHHhcCCCC-----eEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccc
Confidence 45556543 6889999886432 233444333344466655 99999999999999999998866543
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=92.50 E-value=0.4 Score=50.90 Aligned_cols=91 Identities=14% Similarity=0.009 Sum_probs=67.8
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++++-.-..-...+...|.+++.++.+ ..+.+|.+.++..+.... +.+.+++.+..+|.||++-+ +++|++
T Consensus 127 Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~i~~P~NPTG~~~s~~~~~~i~~ 203 (412)
T d1yaaa_ 127 VYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP---EGSIFVLHSCAHNPTGLDPTSEQWVQIVD 203 (412)
T ss_dssp EEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC---TTCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred EecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccCC---CceEEEEecCCCCCccccCCHHHHHHHHh
Confidence 5544433333344446677889999864 456788888888877543 33578888999999999965 778889
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++++++-.|-+|.++.
T Consensus 204 ~a~~~~~~ii~De~Y~~l~ 222 (412)
T d1yaaa_ 204 AIASKNHIALFDTAYQGFA 222 (412)
T ss_dssp HHHHTTCEEEEEESCTTTS
T ss_pred hhccCCEEEeecceeeecc
Confidence 9999999999999996544
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.16 Score=53.69 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=67.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|++.+-.-..-...+...|.+++.+|++.+ +..|.+++.+.+.... ..+.+++.+..+|-||++- .+++|++
T Consensus 124 Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~NPTG~~~s~~~~~~l~~ 200 (397)
T d3tata_ 124 VWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLP---ARSIVLLHPCCHNPTGADLTNDQWDAVIE 200 (397)
T ss_dssp CEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCC---SSCCCEECSSSCSSSCCCCCHHHHHHHHH
T ss_pred ceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcc---cccEEEEecCCCCCCCeeCCHHHHHHHHH
Confidence 666655555555566677789999998654 4678888777766432 2356777777999999995 4567888
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++++++-.|-+|+++.
T Consensus 201 ~a~~~~~~ii~De~Y~~l~ 219 (397)
T d3tata_ 201 ILKARELIPFLDIAYQGFG 219 (397)
T ss_dssp HHHHTTCCCEECBSCTTSS
T ss_pred HHhhcCeeEEeehhhhhhc
Confidence 9999999999999996543
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.2 Score=53.56 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=56.5
Q ss_pred EEecCCCChHHHHHHH-H---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAM-M---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~-~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...-.....-+. + .++.+..++ .+.+++++.+++.+ -+|.+=.-+|.+.-+-||..|+++
T Consensus 96 iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~------~~~~~~~~~i~~~t------~lv~~EspsNP~l~v~Di~~ia~~ 163 (393)
T d1n8pa_ 96 AVSIGDVYGGTHRYFTKVANAHGVETSFTN------DLLNDLPQLIKENT------KLVWIETPTNPTLKVTDIQKVADL 163 (393)
T ss_dssp EEEESSCCHHHHHHHHHTSTTTCSCCEEES------SHHHHHHHHSCSSE------EEEEECSSCTTTCCCCCHHHHHHH
T ss_pred eeeeeeecccchhhhhhhhhcccceeEEee------cchHHHHHHhhhhc------ceeEecCcchhhhhccchhhhhhh
Confidence 6666555555444442 2 355565553 24577888887654 488888888999999999999999
Q ss_pred HH----HcCCceeeeccccC
Q psy852 221 AK----EFDVWLHVDGAYAG 236 (891)
Q Consensus 221 ~~----~~~~~lHvDaA~GG 236 (891)
++ ++|+.+.||.+|++
T Consensus 164 a~~~~~~~g~~lvVDnT~at 183 (393)
T d1n8pa_ 164 IKKHAAGQDVILVVDNTFLS 183 (393)
T ss_dssp HHHHTTTTTCEEEEECTTTH
T ss_pred hhhhcccCCceEEEecCccC
Confidence 99 56778888888844
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=91.90 E-value=3.7 Score=42.92 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=45.4
Q ss_pred eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCcc
Q psy852 165 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSSF 239 (891)
Q Consensus 165 ~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~~ 239 (891)
.+..+|-+ |++.|++.++++. ..|++--...+.|.+-| +++|.++|++||+.+-+|=++-|+..
T Consensus 158 ~~~~~p~~-----d~~~l~~~~~~~i------Aavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR 225 (387)
T d1vefa1 158 PVEFIPYN-----DVEALKRAVDEET------AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGR 225 (387)
T ss_dssp CEEEECTT-----CHHHHHHHCCTTE------EEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred CceEeCCC-----CHHHHHHhcCCCe------EEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCc
Confidence 45566643 6888988886543 34443333344577766 99999999999999999999977543
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=90.96 E-value=0.48 Score=50.12 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=62.5
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEE-ec--CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKIL-EP--DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V-~~--d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
|++.+-.-..-...+...|.+.+.+ +. +....+|.+.+++.+.... ....+++.+..+|.||.+-+ +++|+
T Consensus 133 Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~il~~~P~NPTG~v~s~e~~~~i~ 209 (412)
T d1ajsa_ 133 VYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP---EFSIFVLHACAHNPTGTDPTPEQWKQIA 209 (412)
T ss_dssp EEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred EEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhcc---CCcEEEEecCCCCCcCCCCCHHHHHHHH
Confidence 5554444444444556666554443 33 3345688888887776532 23467888889999999955 78889
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|++|++++..|-+|..+
T Consensus 210 ~la~~~~~~ii~De~Y~~l 228 (412)
T d1ajsa_ 210 SVMKRRFLFPFFDSAYQGF 228 (412)
T ss_dssp HHHHHHTCEEEEEESCTTT
T ss_pred HHHhhCCEEEEecHhhhhh
Confidence 9999999999999999554
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=90.73 E-value=2.7 Score=44.83 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=92.7
Q ss_pred ceEEEecC--CCCCC-cCHHHHHHHHHhhhhcCCccEEEEecCCccc-hhhhhcCCCCccEEEEcCcccCCcccc--cEE
Q psy852 528 VRLKILEP--DDKNS-LRGATLRQVMQQDETMGYIPFFVSTTLGTTS-CYRKSQGIEYADSFNVNVNKWLLTAFD--SSC 601 (891)
Q Consensus 528 v~v~~Vp~--d~~G~-mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G~ 601 (891)
.+++.+.+ ++..+ .|++.+.+.-++. .++.+|.+|.+++. .++-++ -+||-+.-|.-|++++--+ .|+
T Consensus 145 t~li~~EtpsNP~l~v~Di~~i~~iA~~~----g~~~vvDnT~a~tP~~~~Pl~--~GaDiVvhS~TKyl~GHsD~l~G~ 218 (421)
T d2ctza1 145 TRAWWVESIGNPALNIPDLEALAQAAREK----GVALIVDNTFGMGGYLLRPLA--WGAALVTHSLTKWVGGHGAVIAGA 218 (421)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHH----TCEEEEECGGGGGGTSCCGGG--GTCSEEEEETTTTTTCSSCCCCEE
T ss_pred ceEEEEcCCCcceeEecchHHHHHHHHhc----CCceEecccccccceeccccc--cCCcEEEEechhhccCCCCeEEEE
Confidence 34555554 44433 4666666665553 46889999998654 222211 2479999999999988755 677
Q ss_pred EEEeCCccchh----hhc-cCCCccccCCCCCccccCCc------cc----ccccccchHHHHHHHHHHHhhHHHHHHHH
Q psy852 602 LWVADRYKLTS----ALV-VDPLYLQHGHEGAIDYRHWG------IP----LSRRFRSLKLWFVIRTYGLSGLQKYIRRH 666 (891)
Q Consensus 602 llvR~~~~L~~----~l~-~~~~Yl~~~~e~~~~~~~~t------i~----~SRr~~aL~lW~~L~~lG~~G~~~~i~~~ 666 (891)
+...+...... .+. .++.|........ ++... .. .+-...+...|..++ |.+-+.-++++.
T Consensus 219 vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~r--gl~TL~lRm~~~ 294 (421)
T d2ctza1 219 IVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEA--FGELAFIVKARVDGLRDQGQALGPFEAWVVLL--GMETLSLRAERH 294 (421)
T ss_dssp EEECSCSCCTTTTCHHHHSCBGGGTTBCHHHH--HGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHH--HHTTHHHHHHHH
T ss_pred EEcCCcchhhhcccccccCCchhhhhhHHHHH--hccHHHHHHHHHHHHHhccCCCCHHHHHHHhc--CCcchhhHHHHH
Confidence 76665422110 000 1111100000000 00000 00 011122345676655 888999999999
Q ss_pred HHHHHHHHHHhccCCCcEEe-CC-----C-----------c-eeEEEEEecC
Q psy852 667 CELAKLFEGKVRRDPRFEIS-ND-----V-----------R-LGLVCFRLRS 700 (891)
Q Consensus 667 ~~lA~~L~~~L~~~~~~eil-~~-----~-----------~-~~iV~Fr~~~ 700 (891)
.++|..+++.|++.|.++-+ -| | . -++++|.+++
T Consensus 295 ~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~ 346 (421)
T d2ctza1 295 VENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG 346 (421)
T ss_dssp HHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred HHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecC
Confidence 99999999999999998543 22 1 1 2489999964
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.75 E-value=4.4 Score=42.34 Aligned_cols=99 Identities=5% Similarity=-0.023 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc------chhh-hhhHHHHHHHH-HhCCcEEEeecc
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN------NLIA-DQNNRKLLEDI-NASGRLHMVPAS 729 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~------~~~~-d~ln~~L~~~L-~~~G~~~~s~s~ 729 (891)
-+.+..+...+.++.+.+.|++. ++++..+....-+.++++... .... ......+.+.| .+.|++++-++.
T Consensus 302 ~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~ 380 (418)
T d1w7la_ 302 YFVQFPQAMQRCRDHMIRSLQSV-GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSI 380 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGG
T ss_pred ccccchhhhhhhhhhhhhhhhhc-CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchh
Confidence 34455556667788888999875 677765444445666664210 0000 12234566665 457887554432
Q ss_pred c-------cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 730 Q-------EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 730 ~-------~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
. .+..++ +++. +++++++++++.|++..
T Consensus 381 F~~~~~~~~~~~~iRis~~--~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 381 FYSVPHQKHFDHYIRFCFV--KDEATLQAMDEKLRKWK 416 (418)
T ss_dssp GSCHHHHTTSCSEEEEECC--CCHHHHHHHHHHHHHHH
T ss_pred hcCCCccCCCCCEEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 2 234566 8864 47889999998888764
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=1.4 Score=46.52 Aligned_cols=259 Identities=10% Similarity=0.042 Sum_probs=161.4
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++-+.+++.+.. +. ++ +.++|+++|..++.+.. .+..+|++....|.|+..++.+.
T Consensus 94 ~lE~~lA~~~g~-e~--al--~~~SG~~An~~~i~~l~-------------------~~~d~i~~d~~~h~s~~~G~~~~ 149 (401)
T d1fc4a_ 94 ELEQKLAAFLGM-ED--AI--LYSSCFDANGGLFETLL-------------------GAEDAIISDALNHASIIDGVRLC 149 (401)
T ss_dssp HHHHHHHHHHTC-SE--EE--EESCHHHHHHTTHHHHC-------------------CTTCEEEEETTCCHHHHHHHHTS
T ss_pred HHHHHHHHhhcC-Cc--eE--EecchhhhhHHHHHHhc-------------------CCCcEEEeCCcchHHHHcccccc
Confidence 344455555543 22 22 45678999998875421 13457899999999999999988
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEec----CCccc--------hhhh------------------
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTT----LGTTS--------CYRK------------------ 575 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~Vvat----aGTT~--------c~~~------------------ 575 (891)
+.+++.++. .|.+++++.+++..+.+.. +++|+-. .|+.. |.++
T Consensus 150 ~a~~~~~~~-----~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~ 224 (401)
T d1fc4a_ 150 KAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGEN 224 (401)
T ss_dssp CSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTT
T ss_pred CceEEEEcC-----CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCC
Confidence 888777664 4788999988876655444 3333322 23332 3221
Q ss_pred -------hcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHH
Q psy852 576 -------SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLW 648 (891)
Q Consensus 576 -------ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW 648 (891)
..-...+|-++.+..|.++++. |.+++.+++.....-.....|+. |.+..+....
T Consensus 225 G~G~~~~~~~~~~~dii~~tl~Ka~gg~~--Gg~v~g~~~~~~~l~~~~~~~~~----------------s~~l~p~~~~ 286 (401)
T d1fc4a_ 225 GRGSHEYCDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEWLRQRSRPYLF----------------SNSLAPAIVA 286 (401)
T ss_dssp SCCHHHHTTCTTCCSEEEEESSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHH----------------SCCCCHHHHH
T ss_pred CCccchhccCCCCCeEEEeecccccccCC--cccccCCHHHHHHHHcCChhhhh----------------cCCCCHHHHH
Confidence 1113568999999999997554 55666655433221112222222 1121222222
Q ss_pred HHHHHH-HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE--E
Q psy852 649 FVIRTY-GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLH--M 725 (891)
Q Consensus 649 ~~L~~l-G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~--~ 725 (891)
+++..+ ......+..++..++.++|.+.+... ++.+. ..+.+||.+.+.. +.....+.++|.++|++. +
T Consensus 287 aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~-~~~~pIv~v~~~~------~~~a~~~~~~L~~~Gi~v~~i 358 (401)
T d1fc4a_ 287 ASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD------AVVAQKFARELQKEGIYVTGF 358 (401)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC------HHHHHHHHHHHHHTTEECCEE
T ss_pred HHHhhhcccccCHHHHHHHHHHHHHHHhhhccc-CCccC-CCCCCEEEEEECC------HHHHHHHHHHHHHCCceEEeE
Confidence 222222 22334566788889999999999885 44443 3456777766642 345678999999999872 1
Q ss_pred -eeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 726 -VPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 726 -s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.|+...+...+ ++++...|++|||+++++|+++.+
T Consensus 359 ~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~ 395 (401)
T d1fc4a_ 359 FYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK 395 (401)
T ss_dssp CTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 22334556667 999999999999999999999874
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=88.31 E-value=14 Score=36.94 Aligned_cols=78 Identities=12% Similarity=0.011 Sum_probs=55.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-+......++.+.|.+++.||+++++..+-. ..+ .+-+++.+--+|.+|.+-+.+++.+++ ++
T Consensus 99 v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~--------~~~---~~~~l~l~nP~NPtG~~~s~~~l~~~~-~~ 166 (334)
T d2f8ja1 99 SVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEV--------NVG---EGDVVFIPNPNNPTGHVFEREEIERIL-KT 166 (334)
T ss_dssp EEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCCCC--------CCC---TTEEEEEESSCTTTCCCCCHHHHHHHH-TT
T ss_pred cccccccccccccchhccCCcccccccccccccccc--------ccc---cceEEEecccccccceeecHHHhhccc-cc
Confidence 444445666666666778889999999988776421 111 123555666799999999998888765 56
Q ss_pred CCceeeeccc
Q psy852 225 DVWLHVDGAY 234 (891)
Q Consensus 225 ~~~lHvDaA~ 234 (891)
++++.+|=++
T Consensus 167 ~~~ii~Dd~~ 176 (334)
T d2f8ja1 167 GAFVALDEAY 176 (334)
T ss_dssp TCEEEEECTT
T ss_pred eeEEeecccc
Confidence 7888888766
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=87.11 E-value=1.4 Score=45.57 Aligned_cols=166 Identities=13% Similarity=0.062 Sum_probs=93.8
Q ss_pred CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC---CCccccCCcccccccccc-hHHHHHHHHHHH
Q psy852 581 YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE---GAIDYRHWGIPLSRRFRS-LKLWFVIRTYGL 656 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e---~~~~~~~~ti~~SRr~~a-L~lW~~L~~lG~ 656 (891)
.+|.+.+++|||+++|.|.|+++++++. ++ .+.....|+.-... .......+|.+ ... +.+-.+|+.+-.
T Consensus 174 ~iD~~~~~sqK~l~gppG~~~v~~s~~~-le-~~~~~~~~~dl~~~~~~~~~~~~~~Tp~----v~~i~~l~~aL~~~~~ 247 (348)
T d1iuga_ 174 GVDAAASGSQKGLMCPPGLGFVALSPRA-LE-RLKPRGYYLDLARELKAQKEGESAWTPA----INLVLAVAAVLEEVLP 247 (348)
T ss_dssp TCSEEEEESSSTTCCCSCEEEEEECHHH-HH-TCCCCSSTTCHHHHHHHHTTTCCSSCCC----HHHHHHHHHHHHHHGG
T ss_pred cCCEEEeccccceecCCceeeeeechHH-Hh-hhcccccccchhhhhhhhccCccccccc----chHHHHHHHHHHHHHH
Confidence 4899999999999999999999999763 21 11112223210000 00000011211 111 223334443333
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeE
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRL-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDE 735 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~ 735 (891)
+ ..+.++........+...++. .++++..+..+ .+++|+++.. .....+.+.|.++|+....+...-.+.+
T Consensus 248 ~-~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~s~~v~~~~~P~g------~~~~~~~~~l~~~gi~i~~G~~~l~~~~ 319 (348)
T d1iuga_ 248 R-LEEHLALKAWQNALLYGVGEE-GGLRPVPKRFSPAVAAFYLPEG------VPYARVKEAFAQRGAVIAGGQGPLKGKV 319 (348)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHH-TTCEESCSSBCTTCEEEECCTT------CCHHHHHHHHHTTTEECEECCGGGTTTE
T ss_pred H-HhHHHHHHHHHHHHHhhhhhh-hhhccChhhcCCeEEEEECCCC------CCHHHHHHHHHHCCeEEEcCccccCCCE
Confidence 3 344444333333444444433 57777654434 4789998531 1346788889999976443333223345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ |+...+++.+||+.++++|++..+
T Consensus 320 ~RIg~mG~~~~~d~~~~~~~l~~~l~ 345 (348)
T d1iuga_ 320 FRLSLMGAYDRYEALGVAGMFREVLE 345 (348)
T ss_dssp EEECCCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 5 876668899999999999998874
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=85.55 E-value=2.5 Score=44.89 Aligned_cols=58 Identities=12% Similarity=-0.016 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 177 id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
-|+++|++.+++.. ..+..|++--.-.+.|.+-| +.+|.++|++||+.+.+|=++.|+
T Consensus 184 ~~~~~le~~~~~~~---~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~ 245 (427)
T d2gsaa_ 184 NDLEAVKALFAENP---GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF 245 (427)
T ss_dssp TCHHHHHHHHTTST---TTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT
T ss_pred chHHHHHHHHHhCC---CCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc
Confidence 37899999887632 12345555444445588888 999999999999999999999664
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=85.40 E-value=23 Score=36.88 Aligned_cols=44 Identities=9% Similarity=0.051 Sum_probs=30.4
Q ss_pred ceEEEeecccCcccccc----CHHHHHHHHHHcCCceeeeccccCCcc
Q psy852 196 PFFVSTTLGTTSCCSFD----NLAEIGPVAKEFDVWLHVDGAYAGSSF 239 (891)
Q Consensus 196 p~~V~~t~Gtt~~GavD----pl~~I~~i~~~~~~~lHvDaA~GG~~~ 239 (891)
+..|++--.-.+.|.+. -+++|.++|++||+.+-+|=.+-|+..
T Consensus 199 vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR 246 (425)
T d1sffa_ 199 IAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 246 (425)
T ss_dssp EEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred eEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCC
Confidence 44444432333345553 478999999999999999999977553
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=80.07 E-value=36 Score=34.97 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=39.7
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+.+.|+..+... .+..|++=-...+.|.+-| +++|.++|++||+.+-+|=++-|+.
T Consensus 174 ~~~~l~~~~~~~-----~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfg 233 (404)
T d1z7da1 174 DLEALEEELKDP-----NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLG 233 (404)
T ss_dssp CHHHHHHHHTST-----TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred hHHHHHHHhcCC-----CEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCC
Confidence 456666665432 1345554444556688877 9999999999999999999886654
|