Psyllid ID: psy8537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSVKTIFISPGWEWKNYAHVSFIST
Secondary Structure (PSIPRED)
cEEEEEEccEEEEEEcccccccHHHHHHHHHHHHcccccEEEEEEEccccccccccccHHHHHHHHcccccccccEEEEEccccccccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEccEEEEEEcccccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHcccccccccccEEEEEEccccccHHHHccEEEEEcc
Coil and Loop (DISEMBL)
MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFrnnerlltpqdhpiklikfshkftdntsggeksVKTIFIspgwewknyahVSFIST
Flexible Loop (DISEMBL)
MELKVWVEGMQKIVSgvtesttcQDIVFALAHATGKTGRYTLIERFrnnerlltpqdhpiklIKFShkftdntsggekSVKTIfispgwewknyaHVSFIST
Low Complexity Region (SEG)
MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSVKTIFISPGWEWKNYAHVSFIST
Disordered region (IsUnstruct)
***KVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSVKTIFISPGWEWKNYAHVSFI**
Disordered Region (DISOPRED)
MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSVKTIFISPGWEWKNYAHVSFIS*
Disordered Region (DISEMBL)
MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSVKTIFISPGWEWKNYAHVSFIST
Disordered Region (DISPRO)
*ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSVKTIFISPGWEWKNYAHVSFIST
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSVKTIFISPGWEWKNYAHVSFIST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q8CJ96	419	Ras association domain-co	yes	N/A	0.588	0.143	0.666	2e-18
Q8NHQ8	419	Ras association domain-co	yes	N/A	0.588	0.143	0.666	3e-18
Q9DD19	359	Ras association domain-co	no	N/A	0.588	0.167	0.583	3e-17
Q02833	373	Ras association domain-co	no	N/A	0.588	0.160	0.583	3e-17
O75901	435	Ras association domain-co	no	N/A	0.617	0.144	0.378	0.0007

>sp|Q8CJ96|RASF8_MOUSE Ras association domain-containing protein 8 OS=Mus musculus GN=Rassf8 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 51/60 (85%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct: 1  MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Mus musculus (taxid: 10090)

>sp|Q8NHQ8|RASF8_HUMAN Ras association domain-containing protein 8 OS=Homo sapiens GN=RASSF8 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 51/60 (85%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct: 1  MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Homo sapiens (taxid: 9606)

>sp|Q9DD19|RASF7_MOUSE Ras association domain-containing protein 7 OS=Mus musculus GN=Rassf7 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 48/60 (80%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWV+G+Q++V GV+E TTCQ++V ALA A G+TGR+ L++R R  ER L PQ+ P+
Sbjct: 8  MELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQLLPQECPV 67

Mus musculus (taxid: 10090)

>sp|Q02833|RASF7_HUMAN Ras association domain-containing protein 7 OS=Homo sapiens GN=RASSF7 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 48/60 (80%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWV+G+Q++V GV+E TTCQ++V ALA A G+TGR+ L++R R  ER L PQ+ P+
Sbjct: 8  MELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQLLPQECPV 67

Homo sapiens (taxid: 9606)

>sp|O75901|RASF9_HUMAN Ras association domain-containing protein 9 OS=Homo sapiens GN=RASSF9 PE=2 SV=2

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)

Query: 2   ELKVWVEGMQKIVSGVTESTTCQDIVFALA---HAT--------GKTGRYTLIERFRNNE 50
           E+ VWV   +K+V G+T+ TT  D++ AL     AT        GK   Y +IE++R +E
Sbjct: 28  EIVVWVCQEEKLVCGLTKRTTSADVIQALLEEHEATFGEKRFLLGKPSDYCIIEKWRGSE 87

Query: 51  RLLTPQDHPIKLIK 64
           R+L P    +KL K
Sbjct: 88  RVLPPLTRILKLWK 101

May play a role in regulating vesicuar trafficking in cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
328714985	504	PREDICTED: ras association domain-contai	0.617	0.125	0.793	2e-24
242012845	537	conserved hypothetical protein [Pediculu	0.656	0.124	0.732	5e-24
357604626	438	hypothetical protein KGM_21664 [Danaus p	0.617	0.143	0.777	1e-23
347965764	686	AGAP001370-PA [Anopheles gambiae str. PE	0.617	0.091	0.777	3e-23
347965766	667	AGAP001370-PB [Anopheles gambiae str. PE	0.617	0.094	0.777	4e-23
157105415	158	hypothetical protein AaeL_AAEL014488 [Ae	0.745	0.481	0.657	5e-23
270005673	425	hypothetical protein TcasGA2_TC007768 [T	0.617	0.148	0.746	7e-23
350424966	555	PREDICTED: ras association domain-contai	0.617	0.113	0.730	4e-22
380021889	558	PREDICTED: ras association domain-contai	0.617	0.112	0.714	6e-22
328785037	558	PREDICTED: ras association domain-contai	0.617	0.112	0.714	6e-22

>gi|328714985|ref|XP_001946770.2| PREDICTED: ras association domain-containing protein 8-like [Acyrthosiphon pisum]

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/63 (79%), Positives = 60/63 (95%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWVEG+Q++V GVTESTTCQD+V+ALAHATGKTGR+TLIER+RNNERLL PQDHP+
Sbjct: 1  MELKVWVEGIQRVVCGVTESTTCQDVVYALAHATGKTGRFTLIERWRNNERLLAPQDHPV 60

Query: 61 KLI 63
           ++
Sbjct: 61 TVL 63

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012845|ref|XP_002427137.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511408|gb|EEB14399.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/71 (73%), Positives = 64/71 (90%), Gaps = 4/71 (5%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWVEG+Q+IV GVTE TTCQD+V+ALAHATGKTGR+TL ER+R+NERLL+PQDHP+
Sbjct: 1  MELKVWVEGIQRIVCGVTEQTTCQDVVYALAHATGKTGRFTLNERWRSNERLLSPQDHPL 60

Query: 61 KLI----KFSH 67
          K++    K+SH
Sbjct: 61 KILMKWGKYSH 71

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357604626|gb|EHJ64267.1| hypothetical protein KGM_21664 [Danaus plexippus]

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 60/63 (95%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWVEG+Q+IV GVTE+TTCQD+VFALAHATGK GR+TLIER+RNNERLL PQ++P+
Sbjct: 1  MELKVWVEGIQRIVCGVTETTTCQDVVFALAHATGKVGRFTLIERWRNNERLLAPQEYPL 60

Query: 61 KLI 63
          K++
Sbjct: 61 KIL 63

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965764|ref|XP_321770.5| AGAP001370-PA [Anopheles gambiae str. PEST] gi|333470362|gb|EAA43202.5| AGAP001370-PA [Anopheles gambiae str. PEST]

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 59/63 (93%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWVEG+Q+IV GVTE TTCQD+VFALAHATGKTGR+TLIER+RNNERLL P ++P+
Sbjct: 1  MELKVWVEGIQRIVCGVTEVTTCQDVVFALAHATGKTGRFTLIERWRNNERLLAPHENPL 60

Query: 61 KLI 63
          K++
Sbjct: 61 KIL 63

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965766|ref|XP_003435811.1| AGAP001370-PB [Anopheles gambiae str. PEST] gi|333470363|gb|EGK97602.1| AGAP001370-PB [Anopheles gambiae str. PEST]

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 59/63 (93%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWVEG+Q+IV GVTE TTCQD+VFALAHATGKTGR+TLIER+RNNERLL P ++P+
Sbjct: 1  MELKVWVEGIQRIVCGVTEVTTCQDVVFALAHATGKTGRFTLIERWRNNERLLAPHENPL 60

Query: 61 KLI 63
          K++
Sbjct: 61 KIL 63

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105415|ref|XP_001648859.1| hypothetical protein AaeL_AAEL014488 [Aedes aegypti] gi|108869025|gb|EAT33250.1| AAEL014488-PA [Aedes aegypti]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 64/76 (84%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWVEG+Q+IV GVTE TTCQD+VFALAHATGKTGR+TLIER+RNNERLL P ++P+
Sbjct: 1  MELKVWVEGIQRIVCGVTEVTTCQDVVFALAHATGKTGRFTLIERWRNNERLLAPHENPL 60

Query: 61 KLIKFSHKFTDNTSGG 76
          K++    +++ +   G
Sbjct: 61 KILMKWGEYSSDVHAG 76

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005673|gb|EFA02121.1| hypothetical protein TcasGA2_TC007768 [Tribolium castaneum]

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 59/63 (93%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWVEG+Q+IV GVTE+TTCQD+VFALAHATGK+GR+TLIER+RNNER L P ++P+
Sbjct: 1  MELKVWVEGIQRIVCGVTETTTCQDVVFALAHATGKSGRFTLIERWRNNERQLAPNENPL 60

Query: 61 KLI 63
          K++
Sbjct: 61 KIL 63

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424966|ref|XP_003493970.1| PREDICTED: ras association domain-containing protein 8-like [Bombus impatiens]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 59/63 (93%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWVEG+Q+IV GVTE+TTCQD+V+ALAHATG+TGR+TLIER+R NERLL P ++P+
Sbjct: 1  MELKVWVEGIQRIVCGVTETTTCQDVVYALAHATGQTGRFTLIERWRTNERLLAPYENPL 60

Query: 61 KLI 63
          K++
Sbjct: 61 KIL 63

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021889|ref|XP_003694789.1| PREDICTED: ras association domain-containing protein 8-like [Apis florea]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 59/63 (93%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWVEG+Q+IV GVTE+TTCQD+V+ALAHATG+TGR+TL+ER+R NERLL P ++P+
Sbjct: 1  MELKVWVEGIQRIVCGVTETTTCQDVVYALAHATGQTGRFTLVERWRTNERLLAPYENPL 60

Query: 61 KLI 63
          K++
Sbjct: 61 KIL 63

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785037|ref|XP_394021.2| PREDICTED: ras association domain-containing protein 8-like [Apis mellifera]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 59/63 (93%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWVEG+Q+IV GVTE+TTCQD+V+ALAHATG+TGR+TL+ER+R NERLL P ++P+
Sbjct: 1  MELKVWVEGIQRIVCGVTETTTCQDVVYALAHATGQTGRFTLVERWRTNERLLAPYENPL 60

Query: 61 KLI 63
          K++
Sbjct: 61 KIL 63

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
FB|FBgn0261986	607	RASSF8 [Drosophila melanogaste	0.617	0.103	0.746	4.3e-21
UNIPROTKB|F5GYP8	122	RASSF8 "Ras association domain	0.696	0.581	0.597	5.8e-18
UNIPROTKB|F5H0S5	208	RASSF8 "Ras association domain	0.696	0.341	0.597	5.8e-18
UNIPROTKB|F5H7J1	219	RASSF8 "Ras association domain	0.696	0.324	0.597	5.8e-18
UNIPROTKB|F5H8B9	91	RASSF8 "Ras association domain	0.696	0.780	0.597	5.8e-18
UNIPROTKB|F5H8C5	159	RASSF8 "Ras association domain	0.696	0.446	0.597	5.8e-18
UNIPROTKB|E1BTR1	419	RASSF8 "Uncharacterized protei	0.696	0.169	0.597	2.2e-17
UNIPROTKB|Q58CQ7	419	C12orf2 "Chromosome 12 open re	0.696	0.169	0.597	2.2e-17
UNIPROTKB|E2QXU1	419	RASSF8 "Uncharacterized protei	0.696	0.169	0.597	2.2e-17
UNIPROTKB|Q8NHQ8	419	RASSF8 "Ras association domain	0.696	0.169	0.597	2.2e-17

FB|FBgn0261986 RASSF8 [Drosophila melanogaster (taxid:7227)]

 Score = 256 (95.2 bits), Expect = 4.3e-21, P = 4.3e-21
 Identities = 47/63 (74%), Positives = 57/63 (90%)

Query:     1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
             MELKVWVEG+Q+IV GVT +TTCQD+VFALAHATGK GR+TLIER+RNNER L P ++P+
Sbjct:     1 MELKVWVEGIQRIVCGVTVNTTCQDVVFALAHATGKVGRFTLIERWRNNERHLAPNENPM 60

Query:    61 KLI 63
             KL+
Sbjct:    61 KLL 63

GO:0007165 "signal transduction" evidence=IEA

GO:0033227 "dsRNA transport" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0005912 "adherens junction" evidence=IDA

UNIPROTKB|F5GYP8 RASSF8 "Ras association domain-containing protein 8" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query:     1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
             MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct:     1 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query:    61 -KLIKFSHKFTD 71
               L K+    +D
Sbjct:    61 ISLNKWGQYASD 72

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F5H0S5 RASSF8 "Ras association domain-containing protein 8" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query:     1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
             MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct:     1 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query:    61 -KLIKFSHKFTD 71
               L K+    +D
Sbjct:    61 ISLNKWGQYASD 72

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F5H7J1 RASSF8 "Ras association domain-containing protein 8" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query:     1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
             MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct:     1 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query:    61 -KLIKFSHKFTD 71
               L K+    +D
Sbjct:    61 ISLNKWGQYASD 72

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F5H8B9 RASSF8 "Ras association domain-containing protein 8" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query:     1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
             MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct:     1 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query:    61 -KLIKFSHKFTD 71
               L K+    +D
Sbjct:    61 ISLNKWGQYASD 72

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F5H8C5 RASSF8 "Ras association domain-containing protein 8" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query:     1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
             MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct:     1 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query:    61 -KLIKFSHKFTD 71
               L K+    +D
Sbjct:    61 ISLNKWGQYASD 72

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E1BTR1 RASSF8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 218 (81.8 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query:     1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
             MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct:     1 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query:    61 -KLIKFSHKFTD 71
               L K+    +D
Sbjct:    61 VSLNKWGQYASD 72

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q58CQ7 C12orf2 "Chromosome 12 open reading frame 2" [Bos taurus (taxid:9913)]

 Score = 218 (81.8 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query:     1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
             MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct:     1 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query:    61 -KLIKFSHKFTD 71
               L K+    +D
Sbjct:    61 ISLNKWGQYASD 72

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E2QXU1 RASSF8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 218 (81.8 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query:     1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
             MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct:     1 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query:    61 -KLIKFSHKFTD 71
               L K+    +D
Sbjct:    61 ISLNKWGQYASD 72

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q8NHQ8 RASSF8 "Ras association domain-containing protein 8" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query:     1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
             MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct:     1 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query:    61 -KLIKFSHKFTD 71
               L K+    +D
Sbjct:    61 ISLNKWGQYASD 72

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8NHQ8	RASF8_HUMAN	No assigned EC number	0.6666	0.5882	0.1431	yes	N/A
Q8CJ96	RASF8_MOUSE	No assigned EC number	0.6666	0.5882	0.1431	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
KOG1574|consensus	375		100.0
smart00314	90	RA Ras association (RalGDS/AF-6) domain. RasGTP ef	99.34
PF00788	93	RA: Ras association (RalGDS/AF-6) domain; InterPro	99.22
cd01768	87	RA RA (Ras-associating) ubiquitin domain. The RA (	99.13
cd01781	100	AF6_RA_repeat2 Ubiquitin domain of AT-6, second re	98.19
cd01783	97	DAGK_delta_RA Ubiquitin-like domain of Diacylgylce	98.04
cd01775	97	CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase	97.31
cd01779	105	Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb	97.3
cd01778	96	RASSF1_RA Ubiquitin-like domain of RASSF1 tumour s	97.28
cd01787	85	GRB7_RA RA (RAS-associated like) domain of Grb7. G	96.99
cd01784	87	rasfadin_RA Ubiquitin-like domain of Rasfadin. ras	96.74
cd01782	112	AF6_RA_repeat1 Ubiquitin domain of AT-6, first rep	96.33
cd01786	98	STE50_RA Ubiquitin-like domain of STE50_RA. STE50_	92.63
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	92.09
KOG3751|consensus	622		91.83
cd01780	93	PLC_epsilon_RA Ubiquitin-like domain of Phosphatid	88.79
cd01777	87	SNX27_RA Ubiquitin domain of SNX27 (sorting nexin	85.78
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	82.15
cd01776	87	Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin	81.52

>KOG1574|consensus

Probab=100.00  E-value=4.3e-34  Score=236.23  Aligned_cols=69  Identities=54%  Similarity=0.972  Sum_probs=64.8

Q ss_pred             CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCCcchhhhhhcccC
Q psy8537           1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKF   69 (102)
Q Consensus         1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~aw   69 (102)
                      |||+|||||+||+|||||++|||+|||+|||+++|++|+|||||||||+||+|||++||++.|..|++.
T Consensus         6 melkVWVdgeer~VcGvt~~TTCqdVV~ALa~aigq~Grf~iVEKwR~~ER~L~p~erpl~ll~~wge~   74 (375)
T KOG1574|consen    6 MELKVWVDGEERIVCGVTERTTCQDVVIALAQAIGQKGRFTIVEKWRGYERHLAPSERPLKLLAKWGEY   74 (375)
T ss_pred             ceEEEEeccceeeeecccCCccHHHHHHHHHHHhCCCCceEEeehhcccccccCCccCHHHHHHhhhhc
Confidence            899999999999999999999999999999999999999999999999999999998888776665554

>smart00314 RA Ras association (RalGDS/AF-6) domain

Probab=99.34  E-value=5e-12  Score=82.74  Aligned_cols=67  Identities=25%  Similarity=0.398  Sum_probs=59.3

Q ss_pred             eEeEEEcC---eeEEEeccCCcccHHHHHHHHHhhcCC---CCceEEEEee-cCceeecCCCCcchhhhhhccc
Q psy8537           2 ELKVWVEG---MQKIVSGVTESTTCQDIVFALAHATGK---TGRYTLIERF-RNNERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus         2 ELkVWV~G---~eR~V~GvT~~TTC~DVV~ALaq~~G~---~grY~LVEKw-Rg~ER~L~p~e~pl~iL~~W~a   68 (102)
                      .|+|+.+.   ..-....|++.|||+|||.++++..+-   |.+|+|+|.+ .+.||.|+++|+|++++..|+.
T Consensus         4 ~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~~~~~~~~   77 (90)
T smart00314        4 VLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQLQKLWPR   77 (90)
T ss_pred             EEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceEehhhCCC
Confidence            47888876   777788899999999999999997653   6789999999 9999999999999999999853

RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)

>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []

Probab=99.22  E-value=4.3e-11  Score=76.65  Aligned_cols=69  Identities=22%  Similarity=0.248  Sum_probs=61.2

Q ss_pred             eEeEEEcCee----EEEeccCCcccHHHHHHHHHhhcC---CCCceEE--EEeecCceeecCCCCcchhhhhhcccCc
Q psy8537           2 ELKVWVEGMQ----KIVSGVTESTTCQDIVFALAHATG---KTGRYTL--IERFRNNERLLTPQDHPIKLIKFSHKFT   70 (102)
Q Consensus         2 ELkVWV~G~e----R~V~GvT~~TTC~DVV~ALaq~~G---~~grY~L--VEKwRg~ER~L~p~e~pl~iL~~W~awg   70 (102)
                      -|+|+.....    -....|+..|||+|||.++++..|   .|..|+|  ++...+.||.|+++|+|+.++..|...+
T Consensus         4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~~~   81 (93)
T PF00788_consen    4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQLQWPKDS   81 (93)
T ss_dssp             EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSSGT
T ss_pred             EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCcccc
Confidence            4788887665    777889999999999999999765   5899999  7888999999999999999999998766

This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....

>cd01768 RA RA (Ras-associating) ubiquitin domain

Probab=99.13  E-value=3e-10  Score=73.72  Aligned_cols=69  Identities=28%  Similarity=0.424  Sum_probs=56.8

Q ss_pred             EeEEEcC---eeEEEeccCCcccHHHHHHHHHhhcC---CCCceEEEEeecC--ceeecCCCCcchhhhhhcccCcc
Q psy8537           3 LKVWVEG---MQKIVSGVTESTTCQDIVFALAHATG---KTGRYTLIERFRN--NERLLTPQDHPIKLIKFSHKFTD   71 (102)
Q Consensus         3 LkVWV~G---~eR~V~GvT~~TTC~DVV~ALaq~~G---~~grY~LVEKwRg--~ER~L~p~e~pl~iL~~W~awg~   71 (102)
                      |+|+.+.   ..-..--|++.|||+|||.++++..|   .|.+|.|+|...+  .||.|+|+|+|+.+++.|..++.
T Consensus         2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~   78 (87)
T cd01768           2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQRE   78 (87)
T ss_pred             EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCC
Confidence            5566544   34344468999999999999999754   6699999999999  99999999999999988886543

The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.

>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat

Probab=98.19  E-value=3.2e-06  Score=59.84  Aligned_cols=53  Identities=21%  Similarity=0.324  Sum_probs=44.0

Q ss_pred             cCCcccHHHHHHHHHhhcC----CCCceEEEEe----------ec-CceeecCCCCcchhhhhhcccC
Q psy8537          17 VTESTTCQDIVFALAHATG----KTGRYTLIER----------FR-NNERLLTPQDHPIKLIKFSHKF   69 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~~G----~~grY~LVEK----------wR-g~ER~L~p~e~pl~iL~~W~aw   69 (102)
                      +|..||-.+||..-++-.|    +|.+|+|+|.          || ..||+|+++|||+.+++.|.+-
T Consensus        22 vt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~~~~~~~~~~~r~~~eRil~d~E~Pl~i~~~w~~~   89 (100)
T cd01781          22 LSINDNADRIVGEALEKYGLEKSDPDDYCLVEVSNDDDRKSSDLREIDERILDDDECPLFIMTAGPGE   89 (100)
T ss_pred             ecCCccHHHHHHHHHHHhCCCccCccceEEEEEecccccccccccceeEEeCCCCcCHHHHHHhCCCc
Confidence            7889999999987666554    6889999996          44 3699999999999999998753

The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.

>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK)

Probab=98.04  E-value=7.9e-06  Score=57.65  Aligned_cols=51  Identities=29%  Similarity=0.470  Sum_probs=43.8

Q ss_pred             cCCcccHHHHHHHHHhhcC----CCCceEEEEee--cC-ceeecCCCCcchhhhhhcc
Q psy8537          17 VTESTTCQDIVFALAHATG----KTGRYTLIERF--RN-NERLLTPQDHPIKLIKFSH   67 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~~G----~~grY~LVEKw--Rg-~ER~L~p~e~pl~iL~~W~   67 (102)
                      ||..||-+|||..-++-.|    +|.+|+|+|.-  || .||.|+++|||+.++..-.
T Consensus        23 V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ld~gv~ER~l~~~E~Pl~i~~~~r   80 (97)
T cd01783          23 VNKDTTVQDVILEVLPLFGLQAECPESFRLIEVLLDRGVVERTVLPQEKPLQIRLQLR   80 (97)
T ss_pred             ecccchHHHHHHHHHHHhCcccCCccccEEEEEEecCCeeeeeCCCccChHHHHHHhh
Confidence            8899999999988777776    66799999998  54 4999999999999887544

DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.

>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase

Probab=97.31  E-value=0.00058  Score=48.46  Aligned_cols=49  Identities=24%  Similarity=0.373  Sum_probs=42.8

Q ss_pred             cCCcccHHHHHHHHHhh--cCCCCceEEEEeecCceeecCCCCcchhhhhh
Q psy8537          17 VTESTTCQDIVFALAHA--TGKTGRYTLIERFRNNERLLTPQDHPIKLIKF   65 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~--~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~   65 (102)
                      .+..||-+|++..|+.-  ..+.+.|-|+-|-+|.+|+|.|.|+|+.|-+.
T Consensus        19 ~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~Iqkr   69 (97)
T cd01775          19 CPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKR   69 (97)
T ss_pred             cCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHH
Confidence            45789999999999986  34558999999999999999999999998654

CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.

>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA

Probab=97.30  E-value=0.00037  Score=50.13  Aligned_cols=59  Identities=20%  Similarity=0.283  Sum_probs=49.3

Q ss_pred             cCCcccHHHHHHHHHhhcC--CCCceEEEEee--cCceeecCCCCcchhhhhhcccCccCCCC
Q psy8537          17 VTESTTCQDIVFALAHATG--KTGRYTLIERF--RNNERLLTPQDHPIKLIKFSHKFTDNTSG   75 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~~G--~~grY~LVEKw--Rg~ER~L~p~e~pl~iL~~W~awg~E~~~   75 (102)
                      .++.||-+|||.-++.++|  .+++|+|+|.=  -|-|++|.|.|+|+.-..+|-...-|+..
T Consensus        31 a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsGgEEwvL~p~D~pvqR~lLWPr~aqe~hp   93 (105)
T cd01779          31 ATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESGGEEWVLDPTDSPVQRVLLWPRRAQEEHP   93 (105)
T ss_pred             eccCCcHHHHHHHHHHHhCcCccccEEEEEeeccCCeeeecCcccCceeeEEeccHHHHhcCC
Confidence            5789999999999999877  45789999964  68899999999999999999765544433

Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.

>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein

Probab=97.28  E-value=0.00041  Score=49.04  Aligned_cols=52  Identities=23%  Similarity=0.381  Sum_probs=44.2

Q ss_pred             cCCcccHHHHHHHHHhh---cCCCCceEEEEee-cC---ceeecCCCCcchhhhhhccc
Q psy8537          17 VTESTTCQDIVFALAHA---TGKTGRYTLIERF-RN---NERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~---~G~~grY~LVEKw-Rg---~ER~L~p~e~pl~iL~~W~a   68 (102)
                      ||..||+++||.+|++-   ...|..|.|-|.- ++   ++|.|...|+||-.--.|++
T Consensus        23 IsS~tTt~eVI~~LL~KF~v~~nP~kFALYe~~h~~ge~~~rkL~d~E~PL~~rL~~gp   81 (96)
T cd01778          23 ISSKTTVREVIEALLKKFLVVDNPRKFALFEREHRTGQVYLRKLSDDECPLYLRLLAGP   81 (96)
T ss_pred             EecCCcHHHHHHHHHHhheeccCCcceEEEEEEecCCcEEEEECCCCCCCeEeeEeeCC
Confidence            78999999999999996   4678999999873 32   34999999999999999863

RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.

>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7

Probab=96.99  E-value=0.0021  Score=44.50  Aligned_cols=65  Identities=26%  Similarity=0.405  Sum_probs=54.6

Q ss_pred             EeEEEc-CeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeecCc--eeecCCCCcchhhhhhccc
Q psy8537           3 LKVWVE-GMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRNN--ERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus         3 LkVWV~-G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwRg~--ER~L~p~e~pl~iL~~W~a   68 (102)
                      ++|+.. |.-|. -.|.+..||.||...|++...  ..-..+|+|.--+.  ||.+-.+|..+++|..|.-
T Consensus         5 vkv~~~Dg~sK~-l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~   74 (85)
T cd01787           5 VKVYSEDGASKS-LEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHS   74 (85)
T ss_pred             EEEEecCCCeeE-EEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhccc
Confidence            677774 44444 479999999999999998754  55679999999887  9999999999999999864

Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.

>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin

Probab=96.74  E-value=0.0028  Score=44.30  Aligned_cols=51  Identities=14%  Similarity=0.210  Sum_probs=43.6

Q ss_pred             cCCcccHHHHHHHHHhh---cCCCCceEEEEee-cCceeecCCCCcchhhhhhcc
Q psy8537          17 VTESTTCQDIVFALAHA---TGKTGRYTLIERF-RNNERLLTPQDHPIKLIKFSH   67 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~---~G~~grY~LVEKw-Rg~ER~L~p~e~pl~iL~~W~   67 (102)
                      ||..||++|||.+|++-   ...|..|.|-|.- .|-+|.|...|+||-.=-+||
T Consensus        19 VsS~~tt~eVI~~LL~KFkv~~~p~~FALy~vh~~Ge~rkL~d~E~PL~~Rll~G   73 (87)
T cd01784          19 INSTMTTPQVLKLLLNKFKIENSAEEFALYIVHTSGEKRKLKATDYPLIARVLQG   73 (87)
T ss_pred             EecCCCHHHHHHHHHHhccccCCHHHeEEEEEeeCCCEEECCCcCCCeehhhhcC
Confidence            67999999999999985   4678999999987 556699999999997766666

rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines

>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat

Probab=96.33  E-value=0.0096  Score=43.37  Aligned_cols=60  Identities=25%  Similarity=0.356  Sum_probs=47.3

Q ss_pred             CeeEEEec---cCCcccHHHHHHHHHhhc------CCCCceEEEEee-cCceeecCCCCcchhhhhhccc
Q psy8537           9 GMQKIVSG---VTESTTCQDIVFALAHAT------GKTGRYTLIERF-RNNERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus         9 G~eR~V~G---vT~~TTC~DVV~ALaq~~------G~~grY~LVEKw-Rg~ER~L~p~e~pl~iL~~W~a   68 (102)
                      +-+++.+.   |+..+|+.|||.+|++-.      -.+.+|.|-|.- .|-+|.|...|+||-.=-.|++
T Consensus        31 ~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d~E~PL~~RL~w~~  100 (112)
T cd01782          31 GGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLDDEKPLVVQLNWHK  100 (112)
T ss_pred             CCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCCcCCCeEEeeccCC
Confidence            33444444   899999999999999852      345699998887 4668999999999988777874

The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.

>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA

Probab=92.63  E-value=0.27  Score=35.22  Aligned_cols=56  Identities=16%  Similarity=0.344  Sum_probs=47.3

Q ss_pred             cCCcccHHHHHHHHHhhcCCC----CceEEEEeecCceeecCCCCcchhhhhhcccCccC
Q psy8537          17 VTESTTCQDIVFALAHATGKT----GRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDN   72 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~~G~~----grY~LVEKwRg~ER~L~p~e~pl~iL~~W~awg~E   72 (102)
                      +|..-.|..|..+-++-..-.    ..|+|+=-+-+.||.|+=+|+|+-+++....-|..
T Consensus        31 vs~dDpC~kVL~~Alkry~I~~~dW~~Y~L~I~YgdqER~L~ldEKPl~lFk~L~~~g~~   90 (98)
T cd01786          31 ASKEDSCEKILKNAMKRHNLNDQDWRQYVLVICYGDQERILDLDEKPVIIFKNLKQQGLH   90 (98)
T ss_pred             eeccCcHHHHHHHHHHHcCCChhhhhheEEEEEeCCeeeeccccccHHHHHHHHHHcCCC
Confidence            678899999999977764433    56999999999999999999999999988766653

STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.

>smart00295 B41 Band 4

Probab=92.09  E-value=0.9  Score=32.09  Aligned_cols=62  Identities=18%  Similarity=0.203  Sum_probs=43.2

Q ss_pred             eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCC--CCceEEEEeecCce--eecCCCCcchhhh
Q psy8537           2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGK--TGRYTLIERFRNNE--RLLTPQDHPIKLI   63 (102)
Q Consensus         2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~--~grY~LVEKwRg~E--R~L~p~e~pl~iL   63 (102)
                      .++|..-+....-..++..||++||+..+|+..|-  ..-|.|.+.-.+.+  +-|++.....+..
T Consensus         5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~   70 (207)
T smart00295        5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQD   70 (207)
T ss_pred             EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhc
Confidence            46777744444455699999999999999998774  46688888775532  4566664444443

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>KOG3751|consensus

Probab=91.83  E-value=0.19  Score=45.17  Aligned_cols=67  Identities=19%  Similarity=0.286  Sum_probs=55.2

Q ss_pred             eEeEEEcCeeEEEeccCCcccHHHHHHHHHhh--cCCCCceEEEEeec--CceeecCCCCcchhhhhhccc
Q psy8537           2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHA--TGKTGRYTLIERFR--NNERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus         2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~--~G~~grY~LVEKwR--g~ER~L~p~e~pl~iL~~W~a   68 (102)
                      -+||+.+...-..--|.++-||.||..-|++-  .-.--++||||-+-  ++||.+-.+|.-+++|+.|..
T Consensus       190 vVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~  260 (622)
T KOG3751|consen  190 VVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQ  260 (622)
T ss_pred             eEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhccc
Confidence            47888854444445799999999999999985  34557899999995  689999999999999998874

>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase

Probab=88.79  E-value=0.95  Score=32.10  Aligned_cols=61  Identities=15%  Similarity=0.158  Sum_probs=45.7

Q ss_pred             eeEEEeccCCcccHHHHHHHHHh-h---cCCCCceEEEEe----ec------CceeecCCCCcchhhhhhcccCc
Q psy8537          10 MQKIVSGVTESTTCQDIVFALAH-A---TGKTGRYTLIER----FR------NNERLLTPQDHPIKLIKFSHKFT   70 (102)
Q Consensus        10 ~eR~V~GvT~~TTC~DVV~ALaq-~---~G~~grY~LVEK----wR------g~ER~L~p~e~pl~iL~~W~awg   70 (102)
                      +...|--++...|-+|||..-+. +   .-++.+|+|||-    |.      -.-|.|+-+||+++.-..|+.-|
T Consensus        12 qP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~~fVLvEEv~~~~~~~~~~~~~QRVL~~~E~v~~aQs~Wkg~G   86 (93)
T cd01780          12 QPYAILRAPRVSTAQDVIQQTLCKARRSNPNPSDFVLVEEVCKDTKNNKTPKSSQRILLDQECVYQAQSKWKGAG   86 (93)
T ss_pred             CCeeEEEccccccHHHHHHHHHHHhccCCCCccceEEEEEeeccccccCCCChhHhhhhcccchHHHHhhhcCCc
Confidence            44556667788899999875444 3   346789999995    33      24699999999999999998654

PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.

>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27)

Probab=85.78  E-value=2.9  Score=29.18  Aligned_cols=62  Identities=24%  Similarity=0.387  Sum_probs=48.6

Q ss_pred             CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCC----CceEEEEee-cCceeecCCCCcchhh
Q psy8537           1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKT----GRYTLIERF-RNNERLLTPQDHPIKL   62 (102)
Q Consensus         1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~----grY~LVEKw-Rg~ER~L~p~e~pl~i   62 (102)
                      .+|.|.+-.-.++.--+-.+-+-.+|-+++++.+|-|    +-|+|.|-- -.+||-|.|.|.|-+.
T Consensus         2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~~~f~RKL~dfE~Ph~l   68 (87)
T cd01777           2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVINHSFVRKLAPNEFPHKL   68 (87)
T ss_pred             eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEecceEEEeccCccCCceE
Confidence            3788888666666666777778899999999999877    447777764 5789999999999653

SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.

>smart00666 PB1 PB1 domain

Probab=82.15  E-value=9.1  Score=23.98  Aligned_cols=47  Identities=19%  Similarity=0.387  Sum_probs=36.6

Q ss_pred             eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCcee
Q psy8537           2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNER   51 (102)
Q Consensus         2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER   51 (102)
                      .+||...|+.|.+. +....|..|+...+.+..+.+ +.|.|  +|++-|-
T Consensus         3 ~vK~~~~~~~~~~~-~~~~~s~~dL~~~i~~~~~~~~~~~~l--~Y~Dedg   50 (81)
T smart00666        3 DVKLRYGGETRRLS-VPRDISFEDLRSKVAKRFGLDNQSFTL--KYQDEDG   50 (81)
T ss_pred             cEEEEECCEEEEEE-ECCCCCHHHHHHHHHHHhCCCCCCeEE--EEECCCC
Confidence            46787766666665 778999999999999998876 45666  8887654

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector

Probab=81.52  E-value=3.4  Score=29.08  Aligned_cols=50  Identities=18%  Similarity=0.191  Sum_probs=42.2

Q ss_pred             cCCcccHHHHHHHHHhh--cCCCCceEEEEeecCceeecCCCCcchhhhhhc
Q psy8537          17 VTESTTCQDIVFALAHA--TGKTGRYTLIERFRNNERLLTPQDHPIKLIKFS   66 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~--~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W   66 (102)
                      |.+.||-+||-...|+-  .-+|..|-|.--=-|-+++|+|++.|-+|=.-.
T Consensus        20 V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~~Pq~ika~L   71 (87)
T cd01776          20 VRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDTYPQRIKAEL   71 (87)
T ss_pred             cCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcccccceechhh
Confidence            67888999998888885  469999999998899999999999998775433

Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
2cs4_A	95	Solution Structure Of N-Terminal Domain Of Chromoso		8e-20

>pdb|2CS4|A Chain A, Solution Structure Of N-Terminal Domain Of Chromosome 12 Open Reading Frame 2 Length = 95

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHP- 59
          MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++P 
Sbjct: 8  MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 67
Query: 60 IKLIKFSHKFTD 71
          I L K+    +D
Sbjct: 68 ISLNKWGQYASD 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
2cs4_A	95	Protein C12ORF2; GTP binding, ubiquitin fold, stru	7e-28
2uwq_A	86	Apoptosis-stimulating of P53 protein 2; ASPP2, ubi	3e-15

>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5 Length = 95

 Score = 96.1 bits (239), Expect = 7e-28
 Identities = 40/72 (55%), Positives = 55/72 (76%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct: 8  MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 67

Query: 61 KLIKFSHKFTDN 72
            +    ++  +
Sbjct: 68 ISLNKWGQYASD 79

>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens} Length = 86

 Score = 63.9 bits (155), Expect = 3e-15
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 1  MELKVWVEGMQKIVSGV--TESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDH 58
          M L V++   ++  + V  T  T C+D+V  L    G++  + L E +  +ER +   + 
Sbjct: 7  MFLTVYLSNNEQHFTEVPVTPETICRDVV-DLCKEPGESDCH-LAEVWCGSERPVADNER 64

Query: 59 PIKLIK 64
             +++
Sbjct: 65 MFDVLQ 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
2cs4_A	95	Protein C12ORF2; GTP binding, ubiquitin fold, stru	100.0
2uwq_A	86	Apoptosis-stimulating of P53 protein 2; ASPP2, ubi	100.0
1wxa_A	116	Afadin, AF-6 protein; RAS-binding domain, ubiquiti	98.53
2c5l_C	117	Phosphoinositide-specific phospholipase C PLC-epsi	97.66
1wgr_A	100	Growth factor receptor-bound protein 7; RA domain,	97.59
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	97.39
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	97.21
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	97.07
2bye_A	110	Phospholipase C, epsilon 1; RAS association domain	96.9
3ddc_B	163	RAS association domain-containing family protein;	96.87
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	96.5
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	93.96
3ec8_A	166	Putative uncharacterized protein FLJ10324; beta ba	92.4
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	92.39
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	90.03
2al6_A	375	Focal adhesion kinase 1; transferase; 2.35A {Gallu	84.83
2fb0_A	94	Conserved hypothetical protein; SAD, bacteroides t	82.49

>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=100.00  E-value=4.4e-37  Score=213.59  Aligned_cols=77  Identities=55%  Similarity=0.906  Sum_probs=68.7

Q ss_pred             CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCCcchhhhhhcccCccCCCCCccce
Q psy8537           1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSV   80 (102)
Q Consensus         1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~awg~E~~~~~~~~   80 (102)
                      |||+|||||+||+|||||++|||+|||+|||+++|+||+|+|||||||+||+|||+++|+++   |.+||++|++-.-..
T Consensus         8 mel~Vwv~g~er~VsGvT~~TTC~DVV~aL~~~~G~~~~y~LvE~wRg~ER~L~~~~r~l~~---l~~wG~~~~eV~F~L   84 (95)
T 2cs4_A            8 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPIIS---LNKWGQYASDVQLIL   84 (95)
T ss_dssp             BCCCEEETTEEECCSSBCSSSCHHHHHHHHHHHHSCCSEEEEEEEETTEEEECCSSSCHHHH---HHTTGGGSTTCEEEE
T ss_pred             CEEEEEECCceeEEECCCCCCcHHHHHHHHHhccCCCccEEEEEecCCCeecCCCcccHHHH---HHHhCcCCCceEEEE
Confidence            89999999999999999999999999999999999999999999999999999999877666   455677777644433

>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=198.06  Aligned_cols=68  Identities=22%  Similarity=0.350  Sum_probs=63.6

Q ss_pred             CeEeEEEcCeeEEEe--ccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCCcchhhhhhcccCc
Q psy8537           1 MELKVWVEGMQKIVS--GVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFT   70 (102)
Q Consensus         1 MELkVWV~G~eR~V~--GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~awg   70 (102)
                      |||+|||||++|+||  |||++|||+||| ||||++|+ |+|+|+|||||+||+|||+++|+++|+.|++-.
T Consensus         7 mel~Vwv~g~er~v~~vgvT~~TTC~DVV-aL~~~~G~-~~~~LvE~WR~~ER~L~~~er~l~~l~~WG~~~   76 (86)
T 2uwq_A            7 MFLTVYLSNNEQHFTEVPVTPETICRDVV-DLCKEPGE-SDCHLAEVWCGSERPVADNERMFDVLQRFGSQR   76 (86)
T ss_dssp             EEEEEECSSCSSCEEEEEECTTCBSHHHH-HHSCSSCS-SSCEEEEEETTEEEEECTTCBHHHHHHHHCSCG
T ss_pred             eEEEEEecCCccEEEccCCCCCCcHHHHH-HHHHccCC-CcEEEEeeeCCCcccCCCcccHHHHHHHHcccC
Confidence            899999999999999  999999999999 99999999 999999999999999999988888877665543

>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5

Probab=98.53  E-value=1.3e-07  Score=65.85  Aligned_cols=53  Identities=15%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             cCCcccHHHHHHHHHhhcC----CCCceEEEEee----------c-CceeecCCCCcchhhhhhcccC
Q psy8537          17 VTESTTCQDIVFALAHATG----KTGRYTLIERF----------R-NNERLLTPQDHPIKLIKFSHKF   69 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~~G----~~grY~LVEKw----------R-g~ER~L~p~e~pl~iL~~W~aw   69 (102)
                      +|.+||+++||...++-.|    .+.+|+|+|.-          | +.||.|+++|||+.+++.|..-
T Consensus        30 vt~~tta~~vV~eaLekygL~~~~~~~Y~LveV~~~~~~~~~~~~g~~ErvL~~~E~Pl~i~~~w~~~   97 (116)
T 1wxa_A           30 LSTTDTADFAVAESLEKYGLEKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQIFREWPSD   97 (116)
T ss_dssp             CCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEECCSSCCSSSSTTCEEECCCSSCCHHHHHHTCCGG
T ss_pred             eCCCCCHHHHHHHHHHHhCCCCCCchheEEEEEECccccccccCCCceEEECCCCCCHHHHHHhcccc
Confidence            7899999999999888776    46789999985          2 7899999999999999999765

>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A

Probab=97.66  E-value=6.2e-05  Score=53.47  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=46.7

Q ss_pred             EEEeccCCcccHHHHHHHHHhhcCC---------CCceEEEEeec-C-----------ceeecCCCCcchhhhhhcccC
Q psy8537          12 KIVSGVTESTTCQDIVFALAHATGK---------TGRYTLIERFR-N-----------NERLLTPQDHPIKLIKFSHKF   69 (102)
Q Consensus        12 R~V~GvT~~TTC~DVV~ALaq~~G~---------~grY~LVEKwR-g-----------~ER~L~p~e~pl~iL~~W~aw   69 (102)
                      -.+--+|..||-+|||.--++-.|.         +.+|+|+|--- +           .+|.|.++|+|++++..|+.-
T Consensus        21 y~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev~~~~~~k~~~~~~~~~RVL~~~E~~l~~qs~Wk~~   99 (117)
T 2c5l_C           21 RTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKSSQRVLLDQECVFQAQSKWKGA   99 (117)
T ss_dssp             EEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEEECC---------CEEEEECCTTSBHHHHHHTCSSC
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEEcccCCCccccccCceEEecCCCCCHHHHHHhhCcC
Confidence            3444589999999999765555453         59999999873 3           699999999999999999843

>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=97.59  E-value=0.00018  Score=49.55  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=54.8

Q ss_pred             eEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeecC--ceeecCCCCcchhhhhhccc
Q psy8537           2 ELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRN--NERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus         2 ELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwRg--~ER~L~p~e~pl~iL~~W~a   68 (102)
                      .++|+- ||--| .-.|.+..|+.||.+.|+.-.+  ..-.++|+|.+-+  .||.|-.+|.++++|..|.-
T Consensus        11 vvkvf~~Dgssk-si~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~   81 (100)
T 1wgr_A           11 VVKVYSEDGACR-SVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPV   81 (100)
T ss_dssp             EEEEEETTSCEE-EEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCS
T ss_pred             EEEEEecCCCEE-EEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCcc
Confidence            467776 45554 4479999999999999998765  4567999999996  99999999999999998853

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=97.39  E-value=0.0004  Score=54.49  Aligned_cols=67  Identities=13%  Similarity=0.182  Sum_probs=54.6

Q ss_pred             eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeecC--ceeecCCCCcchhhhhhccc
Q psy8537           2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRN--NERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus         2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwRg--~ER~L~p~e~pl~iL~~W~a   68 (102)
                      .++|+++.--=..--|++.||+.||+..|+...+  .+...+|+|.+-+  .||+|-++|+.++++..|..
T Consensus        33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~  103 (281)
T 4gmv_A           33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTR  103 (281)
T ss_dssp             EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCT
T ss_pred             EEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhccc
Confidence            4788885433334469999999999999988654  4566999999987  59999999999999998865

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=97.21  E-value=0.0011  Score=48.33  Aligned_cols=69  Identities=17%  Similarity=0.176  Sum_probs=53.7

Q ss_pred             eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeecC--ceeecCCCCcchhhhhhcccCc
Q psy8537           2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRN--NERLLTPQDHPIKLIKFSHKFT   70 (102)
Q Consensus         2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwRg--~ER~L~p~e~pl~iL~~W~awg   70 (102)
                      .++|+..+..-..--|++.+|+.||+..|+...+  ....++|+|.+.+  .||.|-++|++++++..|....
T Consensus        36 ~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~v~~v~~~w~~~~  108 (291)
T 3tca_A           36 VVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHENVVEVLSDWTRDT  108 (291)
T ss_dssp             EEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSBHHHHHTTSCTTC
T ss_pred             EEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchhHHHHHHhhcccc
Confidence            3566664443333458899999999999998765  3356999999975  5999999999999999887643

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=97.07  E-value=0.0015  Score=50.55  Aligned_cols=66  Identities=20%  Similarity=0.247  Sum_probs=49.7

Q ss_pred             eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhc--CCCCceEEEEeecCc--eeecCCCCcchhhhhhcc
Q psy8537           2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHAT--GKTGRYTLIERFRNN--ERLLTPQDHPIKLIKFSH   67 (102)
Q Consensus         2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~--G~~grY~LVEKwRg~--ER~L~p~e~pl~iL~~W~   67 (102)
                      .++|+.+..--..--|++.+|+.||...|+.-.  ..+...+|+|.+-+.  ||.|-++|+.++++..|.
T Consensus        10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~   79 (256)
T 3hk0_A           10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMA   79 (256)
T ss_dssp             EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHHHHTCC
T ss_pred             EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHHHhccC
Confidence            468888544344446999999999999998643  345779999999655  999999999999988663

>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=96.90  E-value=0.0021  Score=45.47  Aligned_cols=58  Identities=14%  Similarity=0.189  Sum_probs=46.5

Q ss_pred             EEEeccCCcccHHHHHHHHHhhcCC----CCceEEEEe-----ec-------CceeecCCCCcchhhhhhcccC
Q psy8537          12 KIVSGVTESTTCQDIVFALAHATGK----TGRYTLIER-----FR-------NNERLLTPQDHPIKLIKFSHKF   69 (102)
Q Consensus        12 R~V~GvT~~TTC~DVV~ALaq~~G~----~grY~LVEK-----wR-------g~ER~L~p~e~pl~iL~~W~aw   69 (102)
                      -.|--++..||-+||+...++..+.    +.+|+|+|-     |-       -+-|.|+|+|+|++++..|+.=
T Consensus        23 ftI~~~~~~STAkdvl~qaL~ka~~~~~~~~~YvL~EE~v~~~~ek~~~~~~~~qRvL~~~E~vl~aqs~Wk~~   96 (110)
T 2bye_A           23 FTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFLMEEKYFISKEKNECRKQPFQRAIGPEEEIMQILSSWFPE   96 (110)
T ss_dssp             SEEEECCTTCCHHHHHHHHHCCSSSSCCCCCSEEEEEECCCCSSSSCSCTTSCCEEEECSSSCHHHHHHHCCTT
T ss_pred             cEEEEecCCCcHHHHHHHHHHHhcCCCCCcccEEEEEEEeccccccCCccCCceeeecCCCccHHHHHhhhCCC
Confidence            3455689999999999877766554    589999997     21       3559999999999999999864

>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}

Probab=96.87  E-value=0.0012  Score=49.31  Aligned_cols=52  Identities=17%  Similarity=0.377  Sum_probs=44.4

Q ss_pred             cCCcccHHHHHHHHHhhc---CCCCceEEEEe-ecCce---eecCCCCcchhhhhhccc
Q psy8537          17 VTESTTCQDIVFALAHAT---GKTGRYTLIER-FRNNE---RLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~~---G~~grY~LVEK-wRg~E---R~L~p~e~pl~iL~~W~a   68 (102)
                      |+..||..|||.+|++-.   ..|..|+|-|+ -++-|   |.|..+|+||-.--+|++
T Consensus        93 VsS~tTt~eVI~~LL~KFkV~dnP~kFALye~vh~~gev~~RKL~d~E~PL~lrL~~Gp  151 (163)
T 3ddc_B           93 ISSTTTVSEVIQGLLDKFMVVDNPQKFALFKRIHKDGQVLFQKLSIADYPLYLRLLAGP  151 (163)
T ss_dssp             EETTCCHHHHHHHHHHHTTCCSCGGGEEEEEEEEETTEEEEEECCTTCCHHHHHHHHCS
T ss_pred             EccCCcHHHHHHHHHHHhcccCChhheEEEEEEccCCcEEEEECCCcCcCHhHHhhcCC
Confidence            678999999999999963   47899999994 55454   999999999998888876

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=96.50  E-value=0.011  Score=48.33  Aligned_cols=70  Identities=13%  Similarity=0.157  Sum_probs=57.4

Q ss_pred             eEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC---CceEEEEeecCceeecCCCCcchhhhhhcccCccC
Q psy8537           2 ELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT---GRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDN   72 (102)
Q Consensus         2 ELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~---grY~LVEKwRg~ER~L~p~e~pl~iL~~W~awg~E   72 (102)
                      .++|.. ||.. ....+...||++||+..+++.+|-.   .-|.|.+.-.+.||.|+|++.++++++.|-.-..+
T Consensus       218 ~~~V~l~dg~~-~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D~~~~we~~~~~  291 (555)
T 3au4_A          218 TSTVYCHGGGS-CKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVADVLAKFEKLAAT  291 (555)
T ss_dssp             EEEEEETTSCE-EEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHHHHHHHHHHTTS
T ss_pred             ceEEEecCCCe-EEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhHHHHHHHHHhhc
Confidence            466777 5554 5568999999999999999998864   36899998889999999999999999888765443

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A

Probab=93.96  E-value=0.064  Score=40.90  Aligned_cols=65  Identities=14%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             CeEeEEEcCeeEEEeccCC--cccHHHHHHHHHhhcCCC----CceEEEEeecCceeecCCCCcchhhhhhcccC
Q psy8537           1 MELKVWVEGMQKIVSGVTE--STTCQDIVFALAHATGKT----GRYTLIERFRNNERLLTPQDHPIKLIKFSHKF   69 (102)
Q Consensus         1 MELkVWV~G~eR~V~GvT~--~TTC~DVV~ALaq~~G~~----grY~LVEKwRg~ER~L~p~e~pl~iL~~W~aw   69 (102)
                      +.+.|..-+-......+..  +||.+||+.+    +|-+    .-|.|.+.-.+.|++|-|+++|+++++.|...
T Consensus         6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~----lgL~~~~~~~FaL~~~~~~~e~~L~~~~~~~d~~~~W~~~   76 (322)
T 4dxa_B            6 EKVRIYRMDGSYRSVELKHGNNTTVQQIMEG----MRLSQETQQYFTIWICSENLSLQLKPYHKPLQHVRDWPEI   76 (322)
T ss_dssp             CEEEEECTTSCEEEEECTTGGGCCHHHHHTT----SSCCTTGGGGEEEEEECSSCEEECCTTCCHHHHHHTHHHH
T ss_pred             eEEEEEEECCcEEEEEEcCCCCCcHHHHHHH----hCcCccccCeeEEEEECCccccccCccccHHHHHHHHHHH
Confidence            3567777444555678888  9999999654    4532    35999999999999999999999999999764

>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens}

Probab=92.40  E-value=0.15  Score=38.12  Aligned_cols=52  Identities=13%  Similarity=0.321  Sum_probs=40.7

Q ss_pred             cCCcccHHHHHHHHHhhcC----CCCceEEEEe----------ecC-ceeecCCCCcchhhhhhccc
Q psy8537          17 VTESTTCQDIVFALAHATG----KTGRYTLIER----------FRN-NERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus        17 vT~~TTC~DVV~ALaq~~G----~~grY~LVEK----------wRg-~ER~L~p~e~pl~iL~~W~a   68 (102)
                      .|.+.|-.++|..-++-.|    .+..|+|++.          ||. ..|.|+++||||.+...|.+
T Consensus        56 as~rstA~elVkEALERYgL~ke~~~~y~Lcdvig~pG~~~~~w~~e~~rvLgd~EcPL~iq~lW~p  122 (166)
T 3ec8_A           56 ATGTSSARELVKEALERYALDPRQAGQYVLCDVVGQAGDAGQRWQARCFRVFGDSEKPLLIQELWKP  122 (166)
T ss_dssp             EETTCCHHHHHHHHHHHTTSCGGGGGGEEEEEEEC--------CCCCEEEECCTTCCHHHHHHHCCC
T ss_pred             ccccccHHHHHHHHHHHhccCcCCcceeEEEEeecCCCCCcccccccceeecCCCCCceeehcccCC
Confidence            4567778887777677666    4667999885          433 67999999999999999987

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=92.39  E-value=0.17  Score=32.18  Aligned_cols=50  Identities=20%  Similarity=0.195  Sum_probs=39.2

Q ss_pred             CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCC
Q psy8537           1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQD   57 (102)
Q Consensus         1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e   57 (102)
                      |.++|.+.|.......+.+.+|.+|++..|    |-|.+-++|++   +.|++|+++
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~L----gl~~~~VvV~v---NG~~v~~d~   50 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVRAV----DLSPHEVTVLV---DGRPVPEDQ   50 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHHTT----CCCSSCCCEEC---CCCCCCTTS
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHHHc----CCCcceEEEEE---CCEECCHHH
Confidence            899999999987778899999999998776    65555556665   566777774

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=90.03  E-value=0.79  Score=39.15  Aligned_cols=74  Identities=16%  Similarity=0.144  Sum_probs=55.6

Q ss_pred             eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeecCceeec-CCCCcchhhhhhcccCccCCCC
Q psy8537           2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRNNERLL-TPQDHPIKLIKFSHKFTDNTSG   75 (102)
Q Consensus         2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwRg~ER~L-~p~e~pl~iL~~W~awg~E~~~   75 (102)
                      .++|..=+-....+.+...||++||+..+++.+|  +..-|-|...-.+.++.| .+++..+++++.|-.+.+++..
T Consensus       265 ~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~~~dk~~sll~~~e~vlD~l~~~E~~~k~~~~  341 (655)
T 3pvl_A          265 MLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGA  341 (655)
T ss_dssp             EEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEEETTEEEEEETSSCBHHHHHHHHHHHHHTTTC
T ss_pred             EEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEecCCceeecccCceEeecHHHHHHHHHHhhcc
Confidence            4667764444566799999999999999999887  445688877655555555 6788889999999877666543

>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A

Probab=84.83  E-value=1.7  Score=33.86  Aligned_cols=66  Identities=8%  Similarity=0.011  Sum_probs=48.0

Q ss_pred             EeEEEcCee----EEEeccCCcccHHHHHHHHHhhcCCC--CceEEEEeec--CceeecCCCCcchhhhhhccc
Q psy8537           3 LKVWVEGMQ----KIVSGVTESTTCQDIVFALAHATGKT--GRYTLIERFR--NNERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus         3 LkVWV~G~e----R~V~GvT~~TTC~DVV~ALaq~~G~~--grY~LVEKwR--g~ER~L~p~e~pl~iL~~W~a   68 (102)
                      ++|+..+-+    ....-+...|||+||+..+++.+|-.  .-|-|...=-  +--+-|+|++..-+.+..|.+
T Consensus        10 l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~~~k~~~   83 (375)
T 2al6_A           10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFEL   83 (375)
T ss_dssp             ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHHHHHHHT
T ss_pred             EEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhhhhhhhc
Confidence            345554433    45556889999999999999998753  4588887653  223569999888888888765

>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}

Probab=82.49  E-value=0.35  Score=29.56  Aligned_cols=16  Identities=19%  Similarity=0.445  Sum_probs=13.9

Q ss_pred             CCCCceEEEEeecCce
Q psy8537          35 GKTGRYTLIERFRNNE   50 (102)
Q Consensus        35 G~~grY~LVEKwRg~E   50 (102)
                      .+|++|+++|+|++-|
T Consensus        48 ~~p~~~~~~e~w~~~~   63 (94)
T 2fb0_A           48 TRRDVFMICETWQNAE   63 (94)
T ss_dssp             SCTTEEEEEEEESSHH
T ss_pred             CCCCEEEEEEEECCHH
Confidence            5789999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d2cs4a1	84	d.15.1.5 (A:8-91) Ras association domain-containin	2e-30

>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Ras association domain-containing protein 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 2e-30
 Identities = 40/64 (62%), Positives = 52/64 (81%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct: 1  MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query: 61 KLIK 64
            + 
Sbjct: 61 ISLN 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d2cs4a1	84	Ras association domain-containing protein 8 {Human	100.0
d1wxaa1	103	Afadin {Mouse (Mus musculus) [TaxId: 10090]}	98.95
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	98.87
d2byea1	109	Phospholipase C-epsilon-1 {Human (Homo sapiens) [T	98.24
d2c5lc1	106	Phospholipase C-epsilon-1 {Human (Homo sapiens) [T	97.29

>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Ras association domain-containing protein 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-39  Score=218.71  Aligned_cols=74  Identities=57%  Similarity=0.974  Sum_probs=67.2

Q ss_pred             CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCCcchhhhhhcccCccCCCCCc
Q psy8537           1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGE   77 (102)
Q Consensus         1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~awg~E~~~~~   77 (102)
                      |||+|||||+||+|||||++|||+|||+||||++|+||+|+|+|||||+||+|||+++|+++|   .+||++|++-.
T Consensus         1 mel~Vwvdge~r~V~GVt~~TTC~DVV~aL~~~~g~~g~y~LvE~wR~~ER~L~~~~r~l~~l---~~wG~~~~eV~   74 (84)
T d2cs4a1           1 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPIISL---NKWGQYASDVQ   74 (84)
T ss_dssp             BCCCEEETTEEECCSSBCSSSCHHHHHHHHHHHHSCCSEEEEEEEETTEEEECCSSSCHHHHH---HTTGGGSTTCE
T ss_pred             CEEEEEeCCeEEEEeCCCCCCcHHHHHHHHHhccCCCccEEEEEecCCceeeCCCccCHHHHH---HHhCcCCCceE
Confidence            999999999999999999999999999999999999999999999999999999997777666   55666666543

>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Afadin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=5e-10  Score=73.60  Aligned_cols=54  Identities=13%  Similarity=0.143  Sum_probs=46.9

Q ss_pred             eccCCcccHHHHHHHHHhhcC----CCCceEEEEe-----------ecCceeecCCCCcchhhhhhccc
Q psy8537          15 SGVTESTTCQDIVFALAHATG----KTGRYTLIER-----------FRNNERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus        15 ~GvT~~TTC~DVV~ALaq~~G----~~grY~LVEK-----------wRg~ER~L~p~e~pl~iL~~W~a   68 (102)
                      --||..|||+|||.++++-.|    .|.+|+|+|.           +.+.||.|+++|||+.+...|++
T Consensus        21 l~vs~~tTa~eVI~~~L~k~~l~~~~~~~y~L~ev~~~~~~~~~~~~~~~eR~L~~~E~PL~l~~~W~~   89 (103)
T d1wxaa1          21 ILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQIFREWPS   89 (103)
T ss_dssp             EECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEECCSSCCSSSSTTCEEECCCSSCCHHHHHHTCCG
T ss_pred             EEECCCCcHHHHHHHHHHHhCCCCCChhhEEEEEEEecCCCcccccCCcEEEEcCCCCCHHHHHHhCcc
Confidence            359999999999999988654    5899999995           55689999999999999998864

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2e-09  Score=70.92  Aligned_cols=66  Identities=17%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeec--CceeecCCCCcchhhhhhcc
Q psy8537           2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFR--NNERLLTPQDHPIKLIKFSH   67 (102)
Q Consensus         2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwR--g~ER~L~p~e~pl~iL~~W~   67 (102)
                      -++|+..+-.-...-|+..|||+||+..|++..+  ..-.|+|+|.+.  +.||.|.++|+|++++..|.
T Consensus        11 vvkv~~~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~~f~L~E~~~~~~leR~L~d~E~vl~v~~~W~   80 (100)
T d1wgra_          11 VVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWP   80 (100)
T ss_dssp             EEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSC
T ss_pred             EEEEEecCCCEEEEEECCCCcHHHHHHHHHHHhCCCCCCCeEEEEecCCCcceeecCchHhHHHHHHcCC
Confidence            3788886555555669999999999999999765  445799999996  57999999999999999885

>d2byea1 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Phospholipase C-epsilon-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=8.2e-07  Score=60.47  Aligned_cols=59  Identities=14%  Similarity=0.189  Sum_probs=48.3

Q ss_pred             eeEEEeccCCcccHHHHHHHHHhhcC----CCCceEEEEe-----e-------cCceeecCCCCcchhhhhhccc
Q psy8537          10 MQKIVSGVTESTTCQDIVFALAHATG----KTGRYTLIER-----F-------RNNERLLTPQDHPIKLIKFSHK   68 (102)
Q Consensus        10 ~eR~V~GvT~~TTC~DVV~ALaq~~G----~~grY~LVEK-----w-------Rg~ER~L~p~e~pl~iL~~W~a   68 (102)
                      +.-.+-.+|..||++|||..++.-.|    .|.+|+|+|.     |       ..++|+|+++||||.+...|.+
T Consensus        20 ~Py~~l~is~~sTA~~Vv~q~L~K~~~~~~dp~~y~L~Eev~~~~~~k~~~~~~~~qRvL~~~E~pl~~q~~W~~   94 (109)
T d2byea1          20 EPFTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFLMEEKYFISKEKNECRKQPFQRAIGPEEEIMQILSSWFP   94 (109)
T ss_dssp             SSSEEEECCTTCCHHHHHHHHHCCSSSSCCCCCSEEEEEECCCCSSSSCSCTTSCCEEEECSSSCHHHHHHHCCT
T ss_pred             CCcEEEEECCCccHHHHHHHHHHHcCCCCCChhHEEEEEEEecCCCccccccCCceEEEeCCCcchhhHhhccCC
Confidence            44566679999999999997776544    7789999995     2       2457999999999999999975

>d2c5lc1 d.15.1.5 (C:2134-2239) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Phospholipase C-epsilon-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00022  Score=48.47  Aligned_cols=62  Identities=16%  Similarity=0.198  Sum_probs=47.3

Q ss_pred             CeeEEEeccCCcccHHHHHHHHHhhcC---------CCCceEEEEee-c-----------CceeecCCCCcchhhhhhcc
Q psy8537           9 GMQKIVSGVTESTTCQDIVFALAHATG---------KTGRYTLIERF-R-----------NNERLLTPQDHPIKLIKFSH   67 (102)
Q Consensus         9 G~eR~V~GvT~~TTC~DVV~ALaq~~G---------~~grY~LVEKw-R-----------g~ER~L~p~e~pl~iL~~W~   67 (102)
                      .+...|--++..||-+||+...+.-.+         .|.+|+|||-- +           -..|+|+++|++++....|+
T Consensus        14 ~~P~tilkv~~~STa~dvl~qaL~kA~~~~~~~~n~~~~~yvLvEEv~~~~~~K~~~~~~~~qRVL~~~E~v~qaQs~Wk   93 (106)
T d2c5lc1          14 EQPRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKSSQRVLLDQECVFQAQSKWK   93 (106)
T ss_dssp             SCCEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEEECC---------CEEEEECCTTSBHHHHHHTCS
T ss_pred             CCCcEEEEecCCCcHHHHHHHHHHHccCchhhhcCCCcccEEEEEEeccCcccccccCCCCceeecCCCccHHHHHhhhc
Confidence            456677789999999999865554333         45689999854 2           24699999999999999996


Q ss_pred             cCc
Q psy8537          68 KFT   70 (102)
Q Consensus        68 awg   70 (102)
                      .-|
T Consensus        94 g~G   96 (106)
T d2c5lc1          94 GAG   96 (106)
T ss_dssp             SCE
T ss_pred             CCc
Confidence            443