Psyllid ID: psy853

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MLRPGWLIISKLKANSLSIRNTLPPSQVLSSGAHGGGHHVNSSANNVEETRLRSCGSNFCVIGGKGLDNLERPPDSEIYHITGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPEPSQ
Secondary Structure (PSIPRED)
cccccHHHHHHHHccccccccccHHHHHcccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccEEccccEEEEEEcccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEHccHccccHHHcHHHHHHHcccccccccccccccccccHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHcccccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MLRPGWLIISKLKanslsirntlppsqvlssgahggghhvnssannveetrlrscgsnfcviggkgldnlerppdseiyhiTGIYLSCIVVATIMIALMVdplssgisnkgfkdedgndlqkppmpmvsgteeeqiprgkfkmsTKEKWRILKNIGSLSLAFMVQFTAfqgtanlqssinakeglgtVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMcylpyigfqfyprfytlvPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLetvlpdipepsq
Flexible Loop (DISEMBL)
MLRPGWLIISKLKANSLSIRNTLPPSQVLSSGAHGGGHHVNSSANNVEETRLRSCGSNFCVIGGKGLDNLERPPDSEIYHITGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPmvsgteeeqiprgkfkmstkEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLetvlpdipepsq
Low Complexity Region (SEG)
MLRPGWLIISKLKANSLSIRNTLPPSQVLSSGAHGGGHHVNSSANNVEETRLRSCGSNFCVIGGKGLDNLERPPDSEIYHITGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPEPSQ
Disordered region (IsUnstruct)
****GWLIISKLKA*************************************LRSCGSNFCVIGGKGLDNLERPPDSEIYHITGIYLSCIVVATIMIALMVDPL*******************************************EKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL********
Disordered Region (DISOPRED)
**RPGWLIISKLKANSLSIRNTLPPSQVLSS***************VEETRLRSCGSNFCVIGGKGL**LERPPDSEIYHITGIYLSCIVVATIMIALMVDP**********************************************WRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE***********
Disordered Region (DISEMBL)
MLRPGWLIISKLKANSLSIRNTLPPSQVLSSGAHGGGHHVNSSANNVEETRLRSCGSNFCVIGGKGLDNLERPPDSEIYHITGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMP************GKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPEPSQ
Disordered Region (DISPRO)
*LRPGWLIISKLKANSLSIRNTLPPSQVLS**************NNVEETRLRSCGSNFCVIGGKGLDNLERPPDSEIYHITGIYLSCIVVATIMIALMVDPLSSGIS**********DLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDI*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRPGWLIISKLKANSLSIRNTLPPSQVLSSGAHGGGHHVNSSANNVEETRLRSCGSNFCVIGGKGLDNLERPPDSEIYHITGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPEPSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q9Y115	538	UNC93-like protein OS=Dro	yes	N/A	0.611	0.356	0.706	1e-75
Q6DDL7	460	Protein unc-93 homolog A	N/A	N/A	0.480	0.328	0.487	2e-35
A2VE54	457	Protein unc-93 homolog A	yes	N/A	0.480	0.330	0.461	5e-33
Q93380	705	Putative potassium channe	yes	N/A	0.566	0.252	0.377	3e-31
Q710D3	458	Protein unc-93 homolog A	yes	N/A	0.487	0.334	0.429	4e-31
Q86WB7	457	Protein unc-93 homolog A	yes	N/A	0.487	0.334	0.416	1e-28
Q5SPF7	465	Protein unc-93 homolog A	yes	N/A	0.487	0.329	0.416	7e-28
Q94AA1	464	UNC93-like protein 3 OS=A	yes	N/A	0.541	0.366	0.272	5e-11
Q6DIT7	445	UNC93-like protein MFSD11	no	N/A	0.442	0.312	0.299	1e-06
Q6PB15	445	UNC93-like protein MFSD11	N/A	N/A	0.442	0.312	0.305	2e-06

>sp|Q9Y115|UN93L_DROME UNC93-like protein OS=Drosophila melanogaster GN=CG4928 PE=2 SV=1

 Score =  283 bits (724), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/201 (70%), Positives = 164/201 (81%), Gaps = 9/201 (4%)

Query: 105 SGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMV 164
           +G +N GF++++      P  P      +    R K  ++  EKWRILKNI  +S+AFMV
Sbjct: 2   TGFTNAGFENDE------PVKPKAGFEPDTASLREKVVLNPGEKWRILKNISIISIAFMV 55

Query: 165 QFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCVSMMC 221
           QFTAFQGTANLQSSINAK+GLGTVSLSAIYAALV+SCIF+PT    +LTVKWTL  SM+C
Sbjct: 56  QFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSCIFLPTLIIRKLTVKWTLVCSMLC 115

Query: 222 YLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRF 281
           Y PYI FQ +PRFYTLVPAGILVG+GAAPMWA+KATYLTQVG VYAK+T+QAVDAIIVRF
Sbjct: 116 YAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKATYLTQVGQVYAKITEQAVDAIIVRF 175

Query: 282 FGFFFLAWQTAELWGNLISSL 302
           FGFFFLAWQ+AELWGNLISSL
Sbjct: 176 FGFFFLAWQSAELWGNLISSL 196

Drosophila melanogaster (taxid: 7227)

>sp|Q6DDL7|UN93A_XENLA Protein unc-93 homolog A OS=Xenopus laevis GN=unc93a PE=2 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 105/154 (68%), Gaps = 3/154 (1%)

Query: 152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---R 208
           +KNI  +S  F++ FTAF G  +LQSS+N+ EGLG  SLS IYAAL++S +FVP     +
Sbjct: 4   IKNILIVSFGFLLLFTAFGGLQSLQSSLNSDEGLGVASLSVIYAALIVSSVFVPPIVIKK 63

Query: 209 LTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268
           +  KWT+  SM CY+ Y    FY  +YTL+P  +++G G AP+WAAK TYLT+ G  YA+
Sbjct: 64  IGCKWTIVASMCCYITYSLGNFYASWYTLIPTSLILGFGGAPLWAAKCTYLTESGNRYAE 123

Query: 269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
              +    I+ ++FG FFL +Q++ +WGNLISSL
Sbjct: 124 KKGKLAKDIVNQYFGLFFLIFQSSGVWGNLISSL 157

Xenopus laevis (taxid: 8355)

>sp|A2VE54|UN93A_BOVIN Protein unc-93 homolog A OS=Bos taurus GN=UNC93A PE=2 SV=1

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 107/154 (69%), Gaps = 3/154 (1%)

Query: 152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---R 208
           LKN+  LS  F++ FTA+ G  +LQSS+ ++EGLG  +LS +Y  ++LS +F+P     +
Sbjct: 5   LKNVLVLSFGFLLLFTAYGGLQSLQSSLYSEEGLGVAALSTLYGGMLLSSMFLPPVLIGK 64

Query: 209 LTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268
           L  KWTL ++M CY+ +    FY  +YTL+PA +LVG+GAA +W+A+ TYLT VG + A+
Sbjct: 65  LGCKWTLVLAMCCYVAFSLGNFYASWYTLIPASVLVGLGAAALWSAQGTYLTIVGNMQAR 124

Query: 269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
            T Q    ++ ++FG FFL +Q++ +WGNLISSL
Sbjct: 125 KTGQVGKDVVSQYFGIFFLIFQSSGVWGNLISSL 158

Bos taurus (taxid: 9913)

>sp|Q93380|UNC93_CAEEL Putative potassium channel regulatory protein unc-93 OS=Caenorhabditis elegans GN=unc-93 PE=1 SV=4

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 116/204 (56%), Gaps = 26/204 (12%)

Query: 114 DEDGNDL-------------QKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSL 160
           DED  DL             +K    M+SGTE+E+        + K K +I+ N+  LS+
Sbjct: 204 DEDNEDLAYIYGHDFLAKLVRKKKREMMSGTEKER--------ANKIKRKIMSNLWILSV 255

Query: 161 AFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCV 217
           AF+  FTAF G  NLQ+S+N    LG+ SL A+Y +L +S +FVP+F   RL  K T  +
Sbjct: 256 AFLFLFTAFNGLQNLQTSVNGD--LGSDSLVALYLSLAISSLFVPSFMINRLGCKLTFLI 313

Query: 218 SMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277
           ++  Y  YI     P + +++PA I  GI A+ +W AK  Y+T++G  YA L  ++   +
Sbjct: 314 AIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFESQTTV 373

Query: 278 IVRFFGFFFLAWQTAELWGNLISS 301
           IVRFFG+FF+     ++ GN++SS
Sbjct: 374 IVRFFGYFFMIVHCGQVVGNMVSS 397

May contribute to coordination of muscle contraction as regulatory subunit of a nonessential potassium channel complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q710D3|UN93A_MOUSE Protein unc-93 homolog A OS=Mus musculus GN=Unc93a PE=2 SV=1

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 107/156 (68%), Gaps = 3/156 (1%)

Query: 150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF-- 207
           R LKN+  +S  F++ FTA+ G  NLQSS+ +++GLG  +LS +YA+++LS +F+P    
Sbjct: 3   RSLKNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILI 62

Query: 208 -RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266
            +   KWT+  SM CY+ +    F+  +YTL+P  IL+G+GAAP+W+A+ TYLT +G + 
Sbjct: 63  KKCGCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQ 122

Query: 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
           A+   +    ++ ++FG FFL +Q++ +WGNLISSL
Sbjct: 123 AEKVGKLGKDVVNQYFGIFFLVFQSSGVWGNLISSL 158

Mus musculus (taxid: 10090)

>sp|Q86WB7|UN93A_HUMAN Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 104/156 (66%), Gaps = 3/156 (1%)

Query: 150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF-- 207
           R L+N+  +S  F++ FTA+ G  +LQSS+ ++EGLG  +LS +Y  ++LS +F+P    
Sbjct: 3   RSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLI 62

Query: 208 -RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266
            RL  K T+ +SM  Y+ +    F+  +YTL+P  IL+G+GAAP+W+A+ TYLT  G  +
Sbjct: 63  ERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTH 122

Query: 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
           A+   +    ++ ++FG FFL +Q++ +WGNLISSL
Sbjct: 123 AEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSL 158

Homo sapiens (taxid: 9606)

>sp|Q5SPF7|UN93A_DANRE Protein unc-93 homolog A OS=Danio rerio GN=unc93a PE=3 SV=1

 Score =  124 bits (312), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF-- 207
           R  KN+  +S  F++ FTA+ G  +LQSS+NA+EG+G +SLS IYAA++LS +F+P    
Sbjct: 3   RNTKNVLVVSFGFLLLFTAYGGLQSLQSSLNAEEGMGVISLSVIYAAIILSSMFLPPIMI 62

Query: 208 -RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266
             L  KWT+ VSM CY+ Y      P + +L+    ++G+G +P+W+AK TYLT  G   
Sbjct: 63  KNLGCKWTIVVSMGCYVAYSFGNLAPGWASLMSTSAILGMGGSPLWSAKCTYLTISGNRQ 122

Query: 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
            +  ++    +I ++FG FF  +Q++ +WGNL+SSL
Sbjct: 123 GQKHNKKGQDLINQYFGIFFFIFQSSGVWGNLMSSL 158

Danio rerio (taxid: 7955)

>sp|Q94AA1|UN933_ARATH UNC93-like protein 3 OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 21/191 (10%)

Query: 115 EDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTAN 174
           E  ND ++ P+   SG E+ ++  GK            +++  LS++F++ F A+    N
Sbjct: 2   ESRND-EEAPLISASG-EDRKVRAGKCYT---------RDVHILSISFLLIFLAYGAAQN 50

Query: 175 LQSSINAKEGLGTVSLSAIYAALVLSCIFVPTFRLTV---KWTLCVSMMCYLPYIGFQFY 231
           L++++N  + LGT+SL  +Y + +  C  V +  + +   K  L +    Y  ++     
Sbjct: 51  LETTVN--KDLGTISLGILYVSFMF-CSMVASLVVRLMGSKNALVLGTTGYWLFVAANLK 107

Query: 232 PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVD--AIIVRFFGFFFLAW 289
           P ++T+VPA + +G  A+ +W  + TYLT +   +A  TD  +   ++I  F G F+  +
Sbjct: 108 PSWFTMVPASLYLGFAASIIWVGQGTYLTSIARSHA--TDHGLHEGSVIGVFNGEFWAMF 165

Query: 290 QTAELWGNLIS 300
              +L+GNLI+
Sbjct: 166 ACHQLFGNLIT 176

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DIT7|MFS11_XENTR UNC93-like protein MFSD11 OS=Xenopus tropicalis GN=mfsd11 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 18/157 (11%)

Query: 150 RILKNIGSLSLAFMVQFTAFQGTANLQ----SSINAK--EGLGTVSLSAIYAALVLSCIF 203
           R L NI  L + FM  FTAFQ + N+     SS+N+    G G  SL+ IY+    S + 
Sbjct: 6   RKLLNIIILGIGFMFMFTAFQTSGNVAQTVISSLNSTSFHGSGYTSLAIIYSVFSASNLI 65

Query: 204 VPTFRLTV--KWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQ 261
            P+    +  + ++ +S + Y  YI     P  ++     +L+GI AA +W A+ +    
Sbjct: 66  APSIVAVIGCQMSMFLSGLLYSAYIAMFIQPYTWSFYTLSVLIGIAAAVLWTAQGS---- 121

Query: 262 VGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNL 298
                  LT  + D  I +  G F+   Q + L+GNL
Sbjct: 122 ------CLTINSDDTTIGKHSGIFWALLQFSMLFGNL 152

Xenopus tropicalis (taxid: 8364)

>sp|Q6PB15|MFS11_XENLA UNC93-like protein MFSD11 OS=Xenopus laevis GN=mfsd11 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 18/157 (11%)

Query: 150 RILKNIGSLSLAFMVQFTAFQGTANLQ----SSINAK--EGLGTVSLSAIYAALVLSCIF 203
           R L NI  L + FM  FTAFQ + N+     SS+N+    G G  SL+ IY+    S + 
Sbjct: 6   RKLLNIVILGVGFMFMFTAFQTSGNVAQTVISSLNSTSFHGSGYTSLAIIYSVFSASNLI 65

Query: 204 VPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQ 261
            P+    L  + ++ +S + Y  YI     P  ++     +L+GI AA +W A+      
Sbjct: 66  APSVIAVLGCQMSMFLSGLLYSAYIAMFIQPYTWSFYTLSVLIGIAAAVLWTAQG----- 120

Query: 262 VGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNL 298
                  LT  + +  I R  G F+   Q + L+GNL
Sbjct: 121 -----CCLTINSDERTIGRHSGIFWALLQFSMLFGNL 152

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
193688132	582	PREDICTED: UNC93-like protein-like [Acyr	0.659	0.355	0.744	2e-86
91092430	857	PREDICTED: similar to UNC93A protein [Tr	0.630	0.231	0.764	7e-84
340721117	560	PREDICTED: UNC93-like protein-like [Bomb	0.614	0.344	0.775	5e-83
383853902	560	PREDICTED: UNC93-like protein-like [Mega	0.614	0.344	0.770	3e-82
350399440	560	PREDICTED: UNC93-like protein-like [Bomb	0.614	0.344	0.770	3e-82
66555624	564	PREDICTED: UNC93-like protein-like [Apis	0.614	0.342	0.765	4e-82
380029597	561	PREDICTED: UNC93-like protein-like [Apis	0.614	0.344	0.765	4e-82
332021806	777	UNC93-like protein [Acromyrmex echinatio	0.624	0.252	0.75	4e-82
156547345	577	PREDICTED: UNC93-like protein-like isofo	0.611	0.332	0.760	6e-82
307184648	315	UNC93-like protein [Camponotus floridanu	0.627	0.625	0.753	2e-81

>gi|193688132|ref|XP_001945455.1| PREDICTED: UNC93-like protein-like [Acyrthosiphon pisum]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 160/215 (74%), Positives = 180/215 (83%), Gaps = 8/215 (3%)

Query: 96  IALMVDPLSSGISNKGFKDED----GNDLQKPPM-PMVSGTEEEQIPRGKFKMSTKEKWR 150
           +A+    +  G  N+G+K +D       L KPP+  M  G  ++   +GKFKMS KEKWR
Sbjct: 43  VAVYTISVVGGYENQGYKRDDLQSGDGGLAKPPLGSMADGDGDDDQSKGKFKMSPKEKWR 102

Query: 151 ILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF--- 207
           ILKN+ ++SLAFMVQFTAFQGTANLQSSINA+EGLGTVSLSAIYAALVLSCIFVPTF   
Sbjct: 103 ILKNVSTISLAFMVQFTAFQGTANLQSSINAREGLGTVSLSAIYAALVLSCIFVPTFLIK 162

Query: 208 RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267
           RLTVKWTLC+SM+CY+PYIG QFYPRFYTLVPAG+LVG+GAAPMWAAKATYLTQ GAVYA
Sbjct: 163 RLTVKWTLCLSMLCYIPYIGAQFYPRFYTLVPAGVLVGLGAAPMWAAKATYLTQTGAVYA 222

Query: 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
           KLTDQ VD I+VRFFGFFFLAWQTAELWGNLISSL
Sbjct: 223 KLTDQQVDGIVVRFFGFFFLAWQTAELWGNLISSL 257

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092430|ref|XP_968311.1| PREDICTED: similar to UNC93A protein [Tribolium castaneum] gi|270004742|gb|EFA01190.1| hypothetical protein TcasGA2_TC010516 [Tribolium castaneum]

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 156/204 (76%), Positives = 174/204 (85%), Gaps = 6/204 (2%)

Query: 103 LSSGISNKGFK-DEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLA 161
           ++ G  NKGFK D D     KPP   +  T+EE   +GKFK+STKEKWRILKN+  +S A
Sbjct: 329 MTGGYDNKGFKGDGDNGWPGKPPNKEI--TDEEASSQGKFKLSTKEKWRILKNVSCISCA 386

Query: 162 FMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCVS 218
           FM+QFTAFQGTANLQSSINAK+GLGTVSL AIYAALV+SCIFVPTF   RLTVKWTLC+S
Sbjct: 387 FMIQFTAFQGTANLQSSINAKDGLGTVSLCAIYAALVVSCIFVPTFLIKRLTVKWTLCIS 446

Query: 219 MMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAII 278
           ++CY PYIG QFYPRFYTLVPAG+L+GIGAAPMWA+KATYLTQV  VYAKLTDQAVD II
Sbjct: 447 LLCYAPYIGSQFYPRFYTLVPAGVLLGIGAAPMWASKATYLTQVAGVYAKLTDQAVDGII 506

Query: 279 VRFFGFFFLAWQTAELWGNLISSL 302
           VRFFGFFFLAWQT+ELWGNLISSL
Sbjct: 507 VRFFGFFFLAWQTSELWGNLISSL 530

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721117|ref|XP_003398972.1| PREDICTED: UNC93-like protein-like [Bombus terrestris]

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 159/205 (77%), Positives = 177/205 (86%), Gaps = 12/205 (5%)

Query: 106 GISNKGFKDEDGND-----LQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSL 160
           G  N+G+KD DGND      QKPP   +S T+++   R KFK+S  EKWRILKNI ++S+
Sbjct: 38  GYRNEGYKD-DGNDGIPPEPQKPPQ--LSSTDDDTQSR-KFKLSRGEKWRILKNISTVSV 93

Query: 161 AFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCV 217
           AFMVQFTAFQGTANLQSSINA +GLGTVSLSAIYAALVLSCIFVPTF   RLTVKWTLCV
Sbjct: 94  AFMVQFTAFQGTANLQSSINASDGLGTVSLSAIYAALVLSCIFVPTFVIKRLTVKWTLCV 153

Query: 218 SMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277
           SM+CY PYIG QFYP+FYTLVPAG+L+G+GAAPMWAAKATYLTQVG VYAKLTDQ VDAI
Sbjct: 154 SMLCYAPYIGSQFYPKFYTLVPAGVLLGLGAAPMWAAKATYLTQVGGVYAKLTDQPVDAI 213

Query: 278 IVRFFGFFFLAWQTAELWGNLISSL 302
           +VRFFGFFFLAWQTAELWGNL+SSL
Sbjct: 214 VVRFFGFFFLAWQTAELWGNLVSSL 238

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853902|ref|XP_003702461.1| PREDICTED: UNC93-like protein-like [Megachile rotundata]

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/205 (77%), Positives = 177/205 (86%), Gaps = 12/205 (5%)

Query: 106 GISNKGFKDEDGND-----LQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSL 160
           G  N+G+KD DG D      QKPP   +S T+++   R KFK+S  EKWRILKNIG++S+
Sbjct: 37  GYRNEGYKD-DGTDGIPPEPQKPPQ--LSSTDDDTQSR-KFKLSRGEKWRILKNIGTVSV 92

Query: 161 AFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCV 217
           AFMVQFTAFQGTANLQSSINA +GLGTVSLSAIYAALVLSCIFVPTF   RLTVKWTLC+
Sbjct: 93  AFMVQFTAFQGTANLQSSINASDGLGTVSLSAIYAALVLSCIFVPTFVIKRLTVKWTLCM 152

Query: 218 SMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277
           SM+CY PYIG QFYP+FYTLVPAG+L+G+GAAPMWAA+ATYLTQVG VYAKLTDQ VDAI
Sbjct: 153 SMLCYAPYIGSQFYPKFYTLVPAGVLLGLGAAPMWAAQATYLTQVGGVYAKLTDQPVDAI 212

Query: 278 IVRFFGFFFLAWQTAELWGNLISSL 302
           +VRFFGFFFLAWQTAELWGNLISSL
Sbjct: 213 VVRFFGFFFLAWQTAELWGNLISSL 237

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399440|ref|XP_003485523.1| PREDICTED: UNC93-like protein-like [Bombus impatiens]

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/205 (77%), Positives = 176/205 (85%), Gaps = 12/205 (5%)

Query: 106 GISNKGFKDEDGND-----LQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSL 160
           G  N+G+KD DG D      QKPP   +S T+++   R KFK+S  EKWRILKNI ++S+
Sbjct: 38  GYRNEGYKD-DGTDGIPPEPQKPPQ--LSSTDDDTQSR-KFKLSRGEKWRILKNISTVSV 93

Query: 161 AFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCV 217
           AFMVQFTAFQGTANLQSSINA +GLGTVSLSAIYAALVLSCIFVPTF   RLTVKWTLCV
Sbjct: 94  AFMVQFTAFQGTANLQSSINASDGLGTVSLSAIYAALVLSCIFVPTFVIKRLTVKWTLCV 153

Query: 218 SMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277
           SM+CY PYIG QFYP+FYTLVPAG+L+G+GAAPMWAAKATYLTQVG VYAKLTDQ VDAI
Sbjct: 154 SMLCYAPYIGSQFYPKFYTLVPAGVLLGLGAAPMWAAKATYLTQVGGVYAKLTDQPVDAI 213

Query: 278 IVRFFGFFFLAWQTAELWGNLISSL 302
           +VRFFGFFFLAWQTAELWGNL+SSL
Sbjct: 214 VVRFFGFFFLAWQTAELWGNLVSSL 238

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66555624|ref|XP_396585.2| PREDICTED: UNC93-like protein-like [Apis mellifera]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 157/205 (76%), Positives = 176/205 (85%), Gaps = 12/205 (5%)

Query: 106 GISNKGFKDEDGND-----LQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSL 160
           G  N+G+KD DG D      QKPP   +S T+++   R KFK+S  EKWRILKNI ++S+
Sbjct: 41  GYRNEGYKD-DGTDGIPPEPQKPPQ--LSSTDDDTQSR-KFKLSRGEKWRILKNISTVSV 96

Query: 161 AFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCV 217
           AFMVQFTAFQGTANLQSSINA +GLGTVSLSAIYAALVLSCIFVPTF   RLTVKWTLC+
Sbjct: 97  AFMVQFTAFQGTANLQSSINASDGLGTVSLSAIYAALVLSCIFVPTFVIKRLTVKWTLCI 156

Query: 218 SMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277
           SM+CY PYIG QFYP+FYTLVPAG+L+G+GAAPMWAA+ATYLTQVG VYAKLTDQ VDAI
Sbjct: 157 SMLCYAPYIGSQFYPKFYTLVPAGVLLGLGAAPMWAAQATYLTQVGGVYAKLTDQPVDAI 216

Query: 278 IVRFFGFFFLAWQTAELWGNLISSL 302
           +VRFFGFFFLAWQTAELWGNLISSL
Sbjct: 217 VVRFFGFFFLAWQTAELWGNLISSL 241

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029597|ref|XP_003698455.1| PREDICTED: UNC93-like protein-like [Apis florea]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 157/205 (76%), Positives = 176/205 (85%), Gaps = 12/205 (5%)

Query: 106 GISNKGFKDEDGND-----LQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSL 160
           G  N+G+KD DG D      QKPP   +S T+++   R KFK+S  EKWRILKNI ++S+
Sbjct: 38  GYRNEGYKD-DGTDGIPPEPQKPPQ--LSSTDDDTQSR-KFKLSRGEKWRILKNISTVSV 93

Query: 161 AFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCV 217
           AFMVQFTAFQGTANLQSSINA +GLGTVSLSAIYAALVLSCIFVPTF   RLTVKWTLC+
Sbjct: 94  AFMVQFTAFQGTANLQSSINASDGLGTVSLSAIYAALVLSCIFVPTFVIKRLTVKWTLCI 153

Query: 218 SMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277
           SM+CY PYIG QFYP+FYTLVPAG+L+G+GAAPMWAA+ATYLTQVG VYAKLTDQ VDAI
Sbjct: 154 SMLCYAPYIGSQFYPKFYTLVPAGVLLGLGAAPMWAAQATYLTQVGGVYAKLTDQPVDAI 213

Query: 278 IVRFFGFFFLAWQTAELWGNLISSL 302
           +VRFFGFFFLAWQTAELWGNLISSL
Sbjct: 214 VVRFFGFFFLAWQTAELWGNLISSL 238

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021806|gb|EGI62152.1| UNC93-like protein [Acromyrmex echinatior]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 159/212 (75%), Positives = 177/212 (83%), Gaps = 16/212 (7%)

Query: 106 GISNKGFKDEDGND-----LQKPP-MPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLS 159
           G  N+G+KD DG D      QKPP +P      + +    KFK+S  EKWRILKNIG++S
Sbjct: 40  GYRNEGYKD-DGTDGIPPEPQKPPQLPAADDDTQSR----KFKLSRSEKWRILKNIGTVS 94

Query: 160 LAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLC 216
           +AFMVQFTAFQGTANLQSSINA +GLGTVSLSAIYAALVLSCIFVPTF   RLTVKWTLC
Sbjct: 95  IAFMVQFTAFQGTANLQSSINASDGLGTVSLSAIYAALVLSCIFVPTFLIKRLTVKWTLC 154

Query: 217 VSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDA 276
           +SM+CY PYIG QFYP+FYTLVPAG+L+G+GAAPMWAAKATYLTQVG VYAK+TDQ VDA
Sbjct: 155 LSMLCYAPYIGSQFYPKFYTLVPAGVLLGLGAAPMWAAKATYLTQVGGVYAKITDQPVDA 214

Query: 277 IIVRFFGFFFLAWQTAELWGNLISSLETVLPD 308
           I+VRFFGFFFLAWQTAELWGNLISSL  VL D
Sbjct: 215 IVVRFFGFFFLAWQTAELWGNLISSL--VLSD 244

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547345|ref|XP_001602619.1| PREDICTED: UNC93-like protein-like isoform 1 [Nasonia vitripennis] gi|345484362|ref|XP_003425014.1| PREDICTED: UNC93-like protein-like isoform 2 [Nasonia vitripennis]

 Score =  310 bits (794), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 156/205 (76%), Positives = 176/205 (85%), Gaps = 13/205 (6%)

Query: 106 GISNKGFKDEDGN----DLQKPP-MPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSL 160
           G  NKG+KD+  +    D QKPP +P    ++++   R KFK+S  EKWRILKNIG++S+
Sbjct: 55  GYRNKGYKDDGSDGLPPDPQKPPQLP----SDDDGQSR-KFKLSRSEKWRILKNIGTVSI 109

Query: 161 AFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCV 217
           AFMVQFTAFQGTANLQSSINA +GLGTVSLSAIYAALVLSCIFVPTF   RLTVKWTLC+
Sbjct: 110 AFMVQFTAFQGTANLQSSINASDGLGTVSLSAIYAALVLSCIFVPTFLIKRLTVKWTLCL 169

Query: 218 SMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277
           SM+CY PYIG QFYPRFYTLVPAG+L+G+GAAPMWAAKATYLTQVG VYAKLTD+  DAI
Sbjct: 170 SMLCYAPYIGSQFYPRFYTLVPAGVLLGLGAAPMWAAKATYLTQVGGVYAKLTDEPADAI 229

Query: 278 IVRFFGFFFLAWQTAELWGNLISSL 302
           +VRFFGFFFLAWQTAELWGNLISSL
Sbjct: 230 VVRFFGFFFLAWQTAELWGNLISSL 254

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184648|gb|EFN70977.1| UNC93-like protein [Camponotus floridanus]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 159/211 (75%), Positives = 179/211 (84%), Gaps = 14/211 (6%)

Query: 106 GISNKGFKDEDGND-----LQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSL 160
           G  N+G+KD DG D      QKPP   +  T+++   R KFK+S  EKWRILKNIG++S+
Sbjct: 37  GYRNEGYKD-DGTDGIPPEPQKPPQ--LPATDDDTQSR-KFKVSRGEKWRILKNIGTVSI 92

Query: 161 AFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCV 217
           AFMVQFTAFQGTANLQSSINA +GLGTVSLSAIYAALVLSCIFVPTF   RLTVKWTLC+
Sbjct: 93  AFMVQFTAFQGTANLQSSINASDGLGTVSLSAIYAALVLSCIFVPTFLIKRLTVKWTLCL 152

Query: 218 SMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277
           SM+CY PYIG QFYP+FYTLVPAG+L+G+GAAPMWAAKATYLTQVG VYAK+TDQ +DAI
Sbjct: 153 SMLCYAPYIGSQFYPKFYTLVPAGVLLGLGAAPMWAAKATYLTQVGGVYAKITDQPIDAI 212

Query: 278 IVRFFGFFFLAWQTAELWGNLISSLETVLPD 308
           +VRFFGFFFLAWQTAELWGNLISSL  VL D
Sbjct: 213 VVRFFGFFFLAWQTAELWGNLISSL--VLSD 241

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
FB|FBgn0027556	538	CG4928 [Drosophila melanogaste	0.611	0.356	0.716	9.9e-71
FB|FBgn0033289	536	CG2121 [Drosophila melanogaste	0.487	0.285	0.462	1.7e-36
UNIPROTKB|F1NVP3	461	UNC93A "Uncharacterized protei	0.487	0.331	0.461	8.3e-35
UNIPROTKB|A2VE54	457	UNC93A "Protein unc-93 homolog	0.480	0.330	0.461	4.6e-34
UNIPROTKB|E2QT36	456	UNC93A "Uncharacterized protei	0.487	0.335	0.442	1.4e-32
MGI|MGI:1933250	458	Unc93a "unc-93 homolog A (C. e	0.487	0.334	0.429	2.9e-32
UNIPROTKB|Q86WB7	457	UNC93A "Protein unc-93 homolog	0.487	0.334	0.416	7.9e-30
ZFIN|ZDB-GENE-041014-304	467	unc93a "unc-93 homolog A (C. e	0.487	0.327	0.416	2.7e-29
WB|WBGene00006822	705	unc-93 [Caenorhabditis elegans	0.547	0.243	0.389	1e-28
UNIPROTKB|Q93380	705	unc-93 "Putative potassium cha	0.547	0.243	0.389	1e-28

FB|FBgn0027556 CG4928 [Drosophila melanogaster (taxid:7227)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 144/201 (71%), Positives = 164/201 (81%)

Query:   105 SGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMV 164
             +G +N GF+    ND  +P  P      +    R K  ++  EKWRILKNI  +S+AFMV
Sbjct:     2 TGFTNAGFE----ND--EPVKPKAGFEPDTASLREKVVLNPGEKWRILKNISIISIAFMV 55

Query:   165 QFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCVSMMC 221
             QFTAFQGTANLQSSINAK+GLGTVSLSAIYAALV+SCIF+PT    +LTVKWTL  SM+C
Sbjct:    56 QFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSCIFLPTLIIRKLTVKWTLVCSMLC 115

Query:   222 YLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRF 281
             Y PYI FQ +PRFYTLVPAGILVG+GAAPMWA+KATYLTQVG VYAK+T+QAVDAIIVRF
Sbjct:   116 YAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKATYLTQVGQVYAKITEQAVDAIIVRF 175

Query:   282 FGFFFLAWQTAELWGNLISSL 302
             FGFFFLAWQ+AELWGNLISSL
Sbjct:   176 FGFFFLAWQSAELWGNLISSL 196

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

FB|FBgn0033289 CG2121 [Drosophila melanogaster (taxid:7227)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 75/162 (46%), Positives = 108/162 (66%)

Query:   147 EKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPT 206
             E++ I KN+  + LAFM+ FTAF GT+NLQSS+NA + LGT +L+ IY +L+LS IF+P 
Sbjct:    73 ERFIITKNVVVIGLAFMIHFTAFHGTSNLQSSVNADKALGTTTLAVIYGSLILSNIFLPM 132

Query:   207 FRLTVKW-----TLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQ 261
                 ++W     T+ +++  Y+PYI  QFYPRF TL+PA ++VG G  P+W +K TYL+ 
Sbjct:   133 --TVIRWFGCRLTMALALFAYMPYIAAQFYPRFETLIPAALMVGFGGGPLWCSKCTYLST 190

Query:   262 VGAVYAKL--TDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301
             V     ++       D   V+FFG FF+ +Q A++WGNLISS
Sbjct:   191 VSEALTQVRGNKSRKDVNTVKFFGLFFIFYQMAQVWGNLISS 232

GO:0003009 "skeletal muscle contraction" evidence=IMP

UNIPROTKB|F1NVP3 UNC93A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 72/156 (46%), Positives = 107/156 (68%)

Query:   150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF-- 207
             R LKN+  ++  F++ FTA+ G  +LQSS+N++EGLG  SLS +YAAL++S +F+P    
Sbjct:     1 RNLKNVLVIAFGFLLLFTAYGGLQSLQSSLNSEEGLGVASLSVLYAALIVSSMFLPPILI 60

Query:   208 -RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266
              +L  KWT+  SM CY+ +    FY  +YTL+P  +++G+G AP+W+AK TYLT  G  Y
Sbjct:    61 KKLGCKWTIAGSMCCYIAFSLGNFYASWYTLIPTSVILGLGGAPLWSAKCTYLTIAGNSY 120

Query:   267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
             A+   +    II ++FG FFL +Q++ +WGNLISSL
Sbjct:   121 AEKAGKIGKDIINQYFGVFFLIFQSSGIWGNLISSL 156

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|A2VE54 UNC93A "Protein unc-93 homolog A" [Bos taurus (taxid:9913)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 71/154 (46%), Positives = 107/154 (69%)

Query:   152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF---R 208
             LKN+  LS  F++ FTA+ G  +LQSS+ ++EGLG  +LS +Y  ++LS +F+P     +
Sbjct:     5 LKNVLVLSFGFLLLFTAYGGLQSLQSSLYSEEGLGVAALSTLYGGMLLSSMFLPPVLIGK 64

Query:   209 LTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268
             L  KWTL ++M CY+ +    FY  +YTL+PA +LVG+GAA +W+A+ TYLT VG + A+
Sbjct:    65 LGCKWTLVLAMCCYVAFSLGNFYASWYTLIPASVLVGLGAAALWSAQGTYLTIVGNMQAR 124

Query:   269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
              T Q    ++ ++FG FFL +Q++ +WGNLISSL
Sbjct:   125 KTGQVGKDVVSQYFGIFFLIFQSSGVWGNLISSL 158

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QT36 UNC93A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 69/156 (44%), Positives = 104/156 (66%)

Query:   150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF-- 207
             R LKN+  +S  F++ FTA+ G  +LQSS+  +EGLG  +LS +Y  ++LS +F+P    
Sbjct:     3 RSLKNVLVVSFGFLLLFTAYGGLQSLQSSLYREEGLGVTALSTLYGGVLLSSMFLPPLLI 62

Query:   208 -RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266
              +   KWT+ VSM CY+ +    FY  +YTL+P  IL+G+GAAP+W+A+ TYLT +G   
Sbjct:    63 KKFGCKWTIVVSMCCYVAFSLGNFYASWYTLIPTSILLGLGAAPLWSAQCTYLTIMGNTE 122

Query:   267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
             AK   +    ++ ++FG FFL +Q++ +WGNLISSL
Sbjct:   123 AKNVGKVGRDVVNQYFGIFFLIFQSSGVWGNLISSL 158

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1933250 Unc93a "unc-93 homolog A (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 67/156 (42%), Positives = 107/156 (68%)

Query:   150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTFRL 209
             R LKN+  +S  F++ FTA+ G  NLQSS+ +++GLG  +LS +YA+++LS +F+P   +
Sbjct:     3 RSLKNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILI 62

Query:   210 T---VKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266
                  KWT+  SM CY+ +    F+  +YTL+P  IL+G+GAAP+W+A+ TYLT +G + 
Sbjct:    63 KKCGCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQ 122

Query:   267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
             A+   +    ++ ++FG FFL +Q++ +WGNLISSL
Sbjct:   123 AEKVGKLGKDVVNQYFGIFFLVFQSSGVWGNLISSL 158

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q86WB7 UNC93A "Protein unc-93 homolog A" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 65/156 (41%), Positives = 104/156 (66%)

Query:   150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF-- 207
             R L+N+  +S  F++ FTA+ G  +LQSS+ ++EGLG  +LS +Y  ++LS +F+P    
Sbjct:     3 RSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLI 62

Query:   208 -RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266
              RL  K T+ +SM  Y+ +    F+  +YTL+P  IL+G+GAAP+W+A+ TYLT  G  +
Sbjct:    63 ERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTH 122

Query:   267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
             A+   +    ++ ++FG FFL +Q++ +WGNLISSL
Sbjct:   123 AEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSL 158

GO:0005886 "plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-041014-304 unc93a "unc-93 homolog A (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 65/156 (41%), Positives = 101/156 (64%)

Query:   150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF-- 207
             R  KN+  +S  F++ FTA+ G  +LQSS+NA+EG+G +SLS IYAA++LS +F+P    
Sbjct:     3 RNTKNVLVVSFGFLLLFTAYGGLQSLQSSLNAEEGMGVISLSVIYAAIILSSMFLPPIMI 62

Query:   208 -RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266
               L  KWT+ VSM CY+ Y      P + +L+    ++G+G +P+W+AK TYLT  G   
Sbjct:    63 KNLGCKWTIVVSMGCYVAYSFGNLAPGWASLMSTSAILGMGGSPLWSAKCTYLTISGNRQ 122

Query:   267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
              +  ++    +I ++FG FF  +Q++ +WGNL+SSL
Sbjct:   123 GQKHNKKGQDLINQYFGIFFFIFQSSGVWGNLMSSL 158

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00006822 unc-93 [Caenorhabditis elegans (taxid:6239)]

 Score = 328 (120.5 bits), Expect = 1.0e-28, P = 1.0e-28
 Identities = 72/185 (38%), Positives = 112/185 (60%)

Query:   120 LQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSI 179
             ++K    M+SGTE+E+        + K K +I+ N+  LS+AF+  FTAF G  NLQ+S+
Sbjct:   223 VRKKKREMMSGTEKER--------ANKIKRKIMSNLWILSVAFLFLFTAFNGLQNLQTSV 274

Query:   180 NAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCVSMMCYLPYIGFQFYPRFYT 236
             N    LG+ SL A+Y +L +S +FVP+F   RL  K T  +++  Y  YI     P + +
Sbjct:   275 NGD--LGSDSLVALYLSLAISSLFVPSFMINRLGCKLTFLIAIFVYFLYIVINLRPTYSS 332

Query:   237 LVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWG 296
             ++PA I  GI A+ +W AK  Y+T++G  YA L  ++   +IVRFFG+FF+     ++ G
Sbjct:   333 MIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFESQTTVIVRFFGYFFMIVHCGQVVG 392

Query:   297 NLISS 301
             N++SS
Sbjct:   393 NMVSS 397

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0055120 "striated muscle dense body" evidence=IDA

UNIPROTKB|Q93380 unc-93 "Putative potassium channel regulatory protein unc-93" [Caenorhabditis elegans (taxid:6239)]

 Score = 328 (120.5 bits), Expect = 1.0e-28, P = 1.0e-28
 Identities = 72/185 (38%), Positives = 112/185 (60%)

Query:   120 LQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSI 179
             ++K    M+SGTE+E+        + K K +I+ N+  LS+AF+  FTAF G  NLQ+S+
Sbjct:   223 VRKKKREMMSGTEKER--------ANKIKRKIMSNLWILSVAFLFLFTAFNGLQNLQTSV 274

Query:   180 NAKEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCVSMMCYLPYIGFQFYPRFYT 236
             N    LG+ SL A+Y +L +S +FVP+F   RL  K T  +++  Y  YI     P + +
Sbjct:   275 NGD--LGSDSLVALYLSLAISSLFVPSFMINRLGCKLTFLIAIFVYFLYIVINLRPTYSS 332

Query:   237 LVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWG 296
             ++PA I  GI A+ +W AK  Y+T++G  YA L  ++   +IVRFFG+FF+     ++ G
Sbjct:   333 MIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFESQTTVIVRFFGYFFMIVHCGQVVG 392

Query:   297 NLISS 301
             N++SS
Sbjct:   393 NMVSS 397

GO:0015459 "potassium channel regulator activity" evidence=IGI

GO:0043266 "regulation of potassium ion transport" evidence=IGI

GO:0006937 "regulation of muscle contraction" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y115	UN93L_DROME	No assigned EC number	0.7064	0.6114	0.3568	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	314
pfam05978	157	pfam05978, UNC-93, Ion channel regulatory protein	4e-14
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05

>gnl|CDD|114686 pfam05978, UNC-93, Ion channel regulatory protein UNC-93

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 12/116 (10%)

Query: 158 LSLAFMVQFTAFQGTAN-LQSSINAKE---------GLGTVSLSAIYAALVLSCIFVPTF 207
           L   F+  FTAF      L+S I++             G  SL+ IY    +SC+F P+ 
Sbjct: 1   LGFGFLFLFTAFDSQGFILESVIHSLHERDPGTISAYAGYYSLAIIYFFFTVSCLFAPSV 60

Query: 208 --RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQ 261
              LT KW + +  +CY  +     +   Y L  +  L+G+GAA +W  +  YLT+
Sbjct: 61  VDILTPKWAMVIGALCYASFQLGFLFLNSYYLYFSSALLGVGAAFLWTGQGQYLTE 116

This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein. Length = 157

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 17/152 (11%)

Query: 158 LSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF------RLTV 211
           L L F +        +     +    GL       I +A  L              R   
Sbjct: 4   LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGR 63

Query: 212 KWTLCVSMMCY-LPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT 270
           +  L + ++ + L  +   F    + L+    L+G+G   ++ A A            + 
Sbjct: 64  RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAAL----------IA 113

Query: 271 DQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
           +        R  G F   +    L G L+  L
Sbjct: 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	100.0
KOG3097|consensus	390		99.96
KOG3098|consensus	461		99.93
KOG3097|consensus	390		99.32
PF13347	428	MFS_2: MFS/sugar transport protein	97.99
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.85
TIGR00891	405	2A0112 putative sialic acid transporter.	97.85
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.8
TIGR00895	398	2A0115 benzoate transport.	97.8
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.77
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.76
PRK03545	390	putative arabinose transporter; Provisional	97.73
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.71
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.7
PRK10133	438	L-fucose transporter; Provisional	97.6
TIGR00895	398	2A0115 benzoate transport.	97.59
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.54
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.53
PRK03633	381	putative MFS family transporter protein; Provision	97.52
PLN00028	476	nitrate transmembrane transporter; Provisional	97.49
PRK12382	392	putative transporter; Provisional	97.47
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.47
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.47
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.46
KOG2533|consensus	495		97.45
PRK09874	408	drug efflux system protein MdtG; Provisional	97.42
PRK12307	426	putative sialic acid transporter; Provisional	97.41
TIGR00893	399	2A0114 d-galactonate transporter.	97.4
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.4
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.4
TIGR00900	365	2A0121 H+ Antiporter protein.	97.39
PRK05122	399	major facilitator superfamily transporter; Provisi	97.39
TIGR00893	399	2A0114 d-galactonate transporter.	97.39
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.38
PRK03893	496	putative sialic acid transporter; Provisional	97.38
PRK10504	471	putative transporter; Provisional	97.36
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.33
PRK11663	434	regulatory protein UhpC; Provisional	97.32
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.32
PRK10054	395	putative transporter; Provisional	97.32
PRK15075	434	citrate-proton symporter; Provisional	97.3
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.26
TIGR00805	633	oat sodium-independent organic anion transporter.	97.22
PRK09705	393	cynX putative cyanate transporter; Provisional	97.21
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.19
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.18
TIGR00901	356	2A0125 AmpG-related permease.	97.16
PRK10429	473	melibiose:sodium symporter; Provisional	97.16
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.15
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.15
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.14
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.11
TIGR00900	365	2A0121 H+ Antiporter protein.	97.11
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.1
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.09
TIGR00891	405	2A0112 putative sialic acid transporter.	97.09
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.08
PRK05122	399	major facilitator superfamily transporter; Provisi	97.07
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.07
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.06
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.06
KOG0254|consensus	513		97.06
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.06
PRK10091	382	MFS transport protein AraJ; Provisional	97.04
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.03
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.01
PRK10642	490	proline/glycine betaine transporter; Provisional	97.01
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.99
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.98
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	96.95
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.9
PRK10473	392	multidrug efflux system protein MdtL; Provisional	96.89
PRK09848	448	glucuronide transporter; Provisional	96.86
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.84
PRK09874	408	drug efflux system protein MdtG; Provisional	96.84
PRK11043	401	putative transporter; Provisional	96.82
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.79
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.79
PRK09952	438	shikimate transporter; Provisional	96.78
PRK09669	444	putative symporter YagG; Provisional	96.77
PRK12382	392	putative transporter; Provisional	96.71
PRK10489	417	enterobactin exporter EntS; Provisional	96.69
PRK03699	394	putative transporter; Provisional	96.68
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.65
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.64
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.64
PRK14995	495	methyl viologen resistance protein SmvA; Provision	96.63
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	96.62
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.6
PRK10489	417	enterobactin exporter EntS; Provisional	96.59
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.58
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.57
TIGR00898	505	2A0119 cation transport protein.	96.55
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.53
PRK09528	420	lacY galactoside permease; Reviewed	96.52
PRK15011	393	sugar efflux transporter B; Provisional	96.51
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.51
TIGR00898	505	2A0119 cation transport protein.	96.47
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.46
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.46
PRK10504	471	putative transporter; Provisional	96.44
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.37
PRK03699	394	putative transporter; Provisional	96.3
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.29
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.28
PRK10213	394	nepI ribonucleoside transporter; Reviewed	96.28
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.23
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.18
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.17
PRK10054	395	putative transporter; Provisional	96.16
PTZ00207	591	hypothetical protein; Provisional	96.01
PRK09705	393	cynX putative cyanate transporter; Provisional	95.87
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	95.84
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	95.8
PRK12307	426	putative sialic acid transporter; Provisional	95.74
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.74
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	95.66
PRK03545	390	putative arabinose transporter; Provisional	95.55
PRK11663	434	regulatory protein UhpC; Provisional	95.46
KOG4686|consensus	459		95.37
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	95.35
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.33
COG2211	467	MelB Na+/melibiose symporter and related transport	95.24
PRK14995	495	methyl viologen resistance protein SmvA; Provision	95.2
KOG2532|consensus	466		95.19
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.14
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	95.11
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	95.1
PRK11462	460	putative transporter; Provisional	95.07
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	95.07
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	95.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	94.94
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	94.93
PRK10207	489	dipeptide/tripeptide permease B; Provisional	94.84
TIGR00788	468	fbt folate/biopterin transporter. The only functio	94.81
PRK03633	381	putative MFS family transporter protein; Provision	94.78
COG2270	438	Permeases of the major facilitator superfamily [Ge	94.61
PRK10642	490	proline/glycine betaine transporter; Provisional	94.55
PRK11010	491	ampG muropeptide transporter; Validated	94.39
PRK09528	420	lacY galactoside permease; Reviewed	94.38
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.36
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	93.98
KOG1479|consensus	406		93.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	93.93
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	93.91
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	93.84
PRK10077	479	xylE D-xylose transporter XylE; Provisional	93.8
KOG1330|consensus	493		93.75
KOG3764|consensus	464		93.74
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	93.64
KOG0252|consensus	538		93.61
PRK09584	500	tppB putative tripeptide transporter permease; Rev	93.41
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	93.35
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	93.25
PRK11195	393	lysophospholipid transporter LplT; Provisional	93.19
PRK11646	400	multidrug resistance protein MdtH; Provisional	93.15
PRK11652	394	emrD multidrug resistance protein D; Provisional	93.13
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	93.02
KOG0569|consensus	485		92.96
PRK09952	438	shikimate transporter; Provisional	92.89
KOG0255|consensus	521		92.79
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	92.33
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	92.12
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	91.86
PRK11043	401	putative transporter; Provisional	91.79
TIGR00901	356	2A0125 AmpG-related permease.	91.77
KOG2504|consensus	509		91.72
PRK03893	496	putative sialic acid transporter; Provisional	91.63
KOG2325|consensus	488		91.59
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	91.59
PRK10091	382	MFS transport protein AraJ; Provisional	91.42
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	91.31
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	91.03
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	90.76
PRK11902	402	ampG muropeptide transporter; Reviewed	90.29
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	89.27
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	89.13
PRK11010	491	ampG muropeptide transporter; Validated	88.63
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	88.4
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	88.24
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	87.48
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	87.17
PRK10133	438	L-fucose transporter; Provisional	86.51
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	86.32
PRK11902	402	ampG muropeptide transporter; Reviewed	86.14
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	86.04
PRK15075	434	citrate-proton symporter; Provisional	85.39
PRK15011	393	sugar efflux transporter B; Provisional	85.11
PRK10473	392	multidrug efflux system protein MdtL; Provisional	84.73
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	84.7
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	84.34
KOG3762|consensus	618		83.91
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	83.11
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	82.65
PTZ00207	591	hypothetical protein; Provisional	81.87
COG0477	338	ProP Permeases of the major facilitator superfamil	81.84
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	81.1
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	81.04
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	81.01

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=100.00  E-value=4.9e-34  Score=248.75  Aligned_cols=144  Identities=38%  Similarity=0.680  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHhHHhhhhcc----cC------CCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853          158 LSLAFMVQFTAFQGTANLQSSI----NA------KEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY  225 (314)
Q Consensus       158 lsi~F~l~ftAf~~~~~LqSSi----n~------~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy  225 (314)
                      ||++||++|+||++.+++++++    ++      ++++|+++++++|++++++|+++|++  ++|+||+|++|+++|++|
T Consensus         1 Lg~~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y   80 (156)
T PF05978_consen    1 LGIGFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIY   80 (156)
T ss_pred             CchHHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5899999999999999999865    33      36899999999999999999999998  999999999999999999


Q ss_pred             HhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          226 IGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       226 i~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                      +++++||++|+++++++++|+|++++|++||.|+++++          ++++++|++++||+++|+|+++||++.+++..
T Consensus        81 ~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s----------~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen   81 IASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS----------TEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC----------CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998          57899999999999999999999999999988


Q ss_pred             CCCCCC
Q psy853          306 LPDIPE  311 (314)
Q Consensus       306 ~~~~~~  311 (314)
                      ..+.+|
T Consensus       151 ~~~~~~  156 (156)
T PF05978_consen  151 GQTSNE  156 (156)
T ss_pred             CCcCCC
Confidence            877765

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3097|consensus

Probab=99.96  E-value=1.3e-29  Score=242.39  Aligned_cols=156  Identities=49%  Similarity=0.853  Sum_probs=148.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853          148 KWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY  225 (314)
Q Consensus       148 k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy  225 (314)
                      |..++||+.++|++||+.|++|++++|+|+++|.  ++|..|+..+|.....+++|.|.+  ++|+||+|+++..+|.+|
T Consensus        24 ~~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~--~lg~~sl~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly  101 (390)
T KOG3097|consen   24 RLGILKNVLILSIAFLLTFTAYLGLQNLQTSVNY--DLGTVSLGALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY  101 (390)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcccchhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4468999999999999999999999999999997  899999999999999999999976  999999999999999999


Q ss_pred             HhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc-ccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          226 IGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT-DQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       226 i~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~-~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ++.|++|++++++|++..+|+|++++|+++|+|+|+.+++|++.+ ++..+..+.||+|.||.++|..+++||++++.++
T Consensus       102 iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~  181 (390)
T KOG3097|consen  102 IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIM  181 (390)
T ss_pred             HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 4667788999999999999999999999999886


Q ss_pred             h
Q psy853          305 V  305 (314)
Q Consensus       305 ~  305 (314)
                      .
T Consensus       182 ~  182 (390)
T KOG3097|consen  182 T  182 (390)
T ss_pred             H
Confidence            4

>KOG3098|consensus

Probab=99.93  E-value=5.5e-27  Score=234.54  Aligned_cols=155  Identities=26%  Similarity=0.444  Sum_probs=144.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcc----cC------CCChhhHHHHHHHHHHHHhhhcccee--eeccceee
Q psy853          148 KWRILKNIGSLSLAFMVQFTAFQGTANLQSSI----NA------KEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTL  215 (314)
Q Consensus       148 k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSi----n~------~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sL  215 (314)
                      +...++|+..+|++|++++++|++..++++++    ++      .++.||++++++|.+|+++|+|+|+|  ++|+||+|
T Consensus         4 ~~~~~~~v~~lg~g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~l   83 (461)
T KOG3098|consen    4 RRFELLNVLMLGFGFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWAL   83 (461)
T ss_pred             ccchhheeeehhhhHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHH
Confidence            33568999999999999999999999998764    22      35799999999999999999999999  99999999


Q ss_pred             eehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHH
Q psy853          216 CVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELW  295 (314)
Q Consensus       216 vig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~ii  295 (314)
                      ++|+.+|+.|.+++++|+.|++|.+|+++|+|+|++|++||.|+++++          ++++++||.+++|+++++|.++
T Consensus        84 v~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~s----------t~~tie~Nisi~Wai~~~~li~  153 (461)
T KOG3098|consen   84 VIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNS----------TRETIERNISIFWAIGQSSLII  153 (461)
T ss_pred             HHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcC----------ChhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998          6899999999999999999999


Q ss_pred             HHHHHHHhhhCCCCCCC
Q psy853          296 GNLISSLETVLPDIPEP  312 (314)
Q Consensus       296 GnLIs~~il~~~~~~~~  312 (314)
                      |+++.+++....+.++.
T Consensus       154 Ggi~l~~~~~~~~~~~~  170 (461)
T KOG3098|consen  154 GGIILFIYFQFSSSSAI  170 (461)
T ss_pred             hhHhheeeeEecccccc
Confidence            99999999888877654

>KOG3097|consensus

Probab=99.32  E-value=2e-13  Score=131.71  Aligned_cols=201  Identities=23%  Similarity=0.304  Sum_probs=130.3

Q ss_pred             cccccccCccchhhccCCCCCCCCcccCCCCcchhhhhhccCCccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q psy853           15 NSLSIRNTLPPSQVLSSGAHGGGHHVNSSANNVEETRLRSCGSNFCVIGGKGLDNLERPPDSEIYHITGIYLSCIVVATI   94 (314)
Q Consensus        15 ~~~~v~gNLiSslvl~~~~~~~~~~~~~~~~~~~~~~~~~CGan~C~~~~~~~~~~~rP~~~~i~~l~gIy~~c~vlAvl   94 (314)
                      .+.++|||+|||+|+....|+.....|.+   .+++    ||+|||+.+...+.|++||+++.+..+..||+.|+++|++
T Consensus       167 ~~~qv~gn~issli~~~~~~~~~~~sn~t---~~~~----CG~~f~~~g~~a~~nlt~p~~~~~lvls~i~L~c~via~~  239 (390)
T KOG3097|consen  167 QCAQVWGNLISSLIMTLFLHGALSGSNLT---FSVE----CGANFCGSGDKAEGNLTLPPSYVILVLSLIFLPCMVIAVL  239 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccCccce---eeee----cccccCCccccccCCccCCCCCceEEeeHHHHHHHHHHHH
Confidence            36799999999999999888744322322   2222    9999999888999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCccccCCcCCCCCCCCCCCCCCCCCCCcccccCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHHhHHh
Q psy853           95 MIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTAN  174 (314)
Q Consensus        95 ~va~fld~l~~~q~n~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~Nvi~lsi~F~l~ftAf~~~~~  174 (314)
                      ++.+|+|+++|+-|++...-++.++-+-+                 +++-...|++           .++-+++|.++..
T Consensus       240 ~~~~~~~~l~r~~~~r~~~~~~l~i~~l~-----------------~~~l~~~r~~-----------llvP~tif~Gleq  291 (390)
T KOG3097|consen  240 IMLFFLGALKRYGEKRLASVSGLNIFQLT-----------------FKHLRDIRLR-----------LLVPLTIFSGLEQ  291 (390)
T ss_pred             HHHHHHHHHhhhhhhhhhcccccchHHHH-----------------HHHhcCccee-----------eeehhhhhhHHHH
Confidence            99999999999966662222222211111                 1111122222           2233445555444


Q ss_pred             hhhccc-----CCCChhhHHHHHHHHHHHHh-----hhcccee-eeccceeeeehhhhhHHHH--hhccccc---ceehh
Q psy853          175 LQSSIN-----AKEGLGTVSLSAIYAALVLS-----CIFVPTF-RLTVKWTLCVSMMCYLPYI--GFQFYPR---FYTLV  238 (314)
Q Consensus       175 LqSSin-----~~~~lG~~slailY~~~~is-----~~f~P~I-~lG~K~sLvig~l~Y~iyi--~s~~yp~---~y~li  238 (314)
                      .+--.+     ..-.+|---.+..|..+.+.     ++|.+.. ++|.-..++++...-.+-+  .-++-|+   .+..+
T Consensus       292 aF~~~~fTk~~V~c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y  371 (390)
T KOG3097|consen  292 AFLCADFTKAYVACALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFY  371 (390)
T ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEE
Confidence            332111     11234555555555555544     3455555 8888888888877554433  3333333   56778


Q ss_pred             hhHHHhccCchh
Q psy853          239 PAGILVGIGAAP  250 (314)
Q Consensus       239 ~as~l~G~gagl  250 (314)
                      ..+++-|+|-+.
T Consensus       372 ~~aalwgv~d~v  383 (390)
T KOG3097|consen  372 VAAALWGVGDAV  383 (390)
T ss_pred             eehhhcCccHHH
Confidence            888998887664

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.99  E-value=7.3e-05  Score=73.27  Aligned_cols=120  Identities=13%  Similarity=0.071  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-c--ccceehhhhHHHhccCchhhhchhhhhHhh
Q psy853          187 TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-Y--PRFYTLVPAGILVGIGAAPMWAAKATYLTQ  261 (314)
Q Consensus       187 ~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-y--p~~y~li~as~l~G~gagllW~aqg~ylt~  261 (314)
                      ..-..+.+....++.++.|.+  |+|.|+++.++.+.+.+-.+..+ .  .+.+.+++..++.|++.+..|+...+.+.+
T Consensus       263 ~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad  342 (428)
T PF13347_consen  263 SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLAD  342 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccccccc
Confidence            334445566666666677777  99999999999988877655533 3  378888999999999999999999999988


Q ss_pred             hhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCC
Q psy853          262 VGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDI  309 (314)
Q Consensus       262 ~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~  309 (314)
                      .......+++   ++.-|.++|++..+...++.+|..+...++.....
T Consensus       343 ~id~~e~~tg---~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  343 VIDYDEWKTG---RRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             chhhHHHhcC---CCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            8754443333   34578899999999999999999998888765433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.85  E-value=6.7e-05  Score=73.47  Aligned_cols=144  Identities=19%  Similarity=0.134  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhh----HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853          152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGT----VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY  225 (314)
Q Consensus       152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~----~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy  225 (314)
                      ++.++.+.+++++.+.-..........+.++-++..    ...++.+..++++.++...+  ++|.|+.+.++.+.+.+.
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~   86 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA   86 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence            556777777777655544444433333333222222    23344455566666666655  999999999999888776


Q ss_pred             Hhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          226 IGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       226 i~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      .... +-++++.++.+-++.|++.+..|++...++.+..          +++.+++..+++......+.++|.+++..+.
T Consensus        87 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        87 STATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWF----------PAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6543 4467778889999999999999988888887765          3567899999999999999999998887665


Q ss_pred             h
Q psy853          305 V  305 (314)
Q Consensus       305 ~  305 (314)
                      .
T Consensus       157 ~  157 (412)
T TIGR02332       157 A  157 (412)
T ss_pred             h
Confidence            4

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.85  E-value=5.2e-05  Score=71.52  Aligned_cols=143  Identities=15%  Similarity=0.226  Sum_probs=99.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCh----hhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853          152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGL----GTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY  225 (314)
Q Consensus       152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~l----G~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy  225 (314)
                      ++.+..+.+++++....+.....+...+.++-++    .....++.+....++.++...+  ++|.|+.++++.+...+-
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~   90 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG   90 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4455666666666666555555554443221111    1223344555566666666666  999999999998777654


Q ss_pred             Hhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          226 IGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       226 i~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ... .+.++++.++.+-++.|++.+..+++..+++.+..          .++.+++..+++......+.++|+++...+.
T Consensus        91 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        91 TLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW----------PKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433 33466777888999999999999999888888775          3567889999999999999998888776554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.80  E-value=0.0001  Score=71.78  Aligned_cols=104  Identities=12%  Similarity=0.148  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      ++......++.++.+.+  ++|.|+.++++.+.+.+-... -+.++.+.++..-++.|++.+..++....++.+..    
T Consensus        62 ~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~----  137 (394)
T PRK10213         62 TVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLV----  137 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----
Confidence            34445555666666666  999999999999888764333 34566788889999999999999998888887765    


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                            +++.+++..++++.....+.++|..+...+.
T Consensus       138 ------~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~  168 (394)
T PRK10213        138 ------PPRTVPKALSVIFGAVSIALVIAAPLGSFLG  168 (394)
T ss_pred             ------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  3567889999999999999988888776553

>TIGR00895 2A0115 benzoate transport

Probab=97.80  E-value=5.1e-05  Score=71.09  Aligned_cols=104  Identities=12%  Similarity=-0.022  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHH-HHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP-YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i-yi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      .++......++.++.+.+  ++|.|..++...+.-.. +.......+.+.++...++.|++.+..++...+++.+..   
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---  367 (398)
T TIGR00895       291 GALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY---  367 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---
Confidence            334444455666666666  88888433322221111 111122345555677888999999988888777776665   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                             .++.+++..|+...+..++..+|.++...+
T Consensus       368 -------~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       368 -------PTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence                   467889999999999999999999887754

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.77  E-value=3.1e-05  Score=71.45  Aligned_cols=102  Identities=17%  Similarity=0.244  Sum_probs=81.8

Q ss_pred             HHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853          193 IYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL  269 (314)
Q Consensus       193 lY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~  269 (314)
                      .+....++.++.+.+  ++|.|+.++++.+.+++......+ ++.+.++.+.++.|++.+..+++...++.+..      
T Consensus        41 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~------  114 (352)
T PF07690_consen   41 FFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWF------  114 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccc------
Confidence            334455566666655  999999999999988888333334 66678899999999999999999999998886      


Q ss_pred             cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                          +++.+++..++.....+.+.++|.++...+.
T Consensus       115 ----~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  145 (352)
T PF07690_consen  115 ----PPEERGRAFGILSAGFSLGSILGPLLGGFLI  145 (352)
T ss_dssp             ----CTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ----hhhhhhhccccccchhhhhhhcccchhhhhh
Confidence                3568899999999999999999999887665

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.76  E-value=6.4e-05  Score=68.69  Aligned_cols=107  Identities=17%  Similarity=0.265  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      .++.+....+++++.+.+  ++|+|+.++++.+...+....... ++.+.++.+.++.|++.+..|++...++.+..   
T Consensus        40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---  116 (352)
T cd06174          40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF---  116 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhC---
Confidence            334444455555555555  999999999998887766655443 56677888999999999999999999988886   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL  306 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~  306 (314)
                             +++.+++..++.....+.+.++|+.+...+...
T Consensus       117 -------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  149 (352)
T cd06174         117 -------PPKERGRALGLFSAGFGLGALLGPLLGGLLAES  149 (352)
T ss_pred             -------CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   356788999999999999999999988877643

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03545 putative arabinose transporter; Provisional

Probab=97.73  E-value=8.5e-05  Score=71.43  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=76.5

Q ss_pred             HHHHHHHhhhcccee--eeccceeeeehhhhhHHHH-hhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853          193 IYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI-GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL  269 (314)
Q Consensus       193 lY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi-~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~  269 (314)
                      .+...+++.++.+.+  |+|.|+.+.++.+.+.+-. ...+.++.+.++..-++.|++.+..|+...+++.+..      
T Consensus        53 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~------  126 (390)
T PRK03545         53 YAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVA------  126 (390)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence            334455666655555  9999999999988776653 3344577788888889999999999988888877765      


Q ss_pred             cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                          .++.+++..|++......+.++|..+...+
T Consensus       127 ----~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l  156 (390)
T PRK03545        127 ----PAGKKAQALSLLATGTALAMVLGLPLGRVI  156 (390)
T ss_pred             ----ChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence                356788999998888888888887766543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.71  E-value=0.00013  Score=78.09  Aligned_cols=105  Identities=11%  Similarity=0.190  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      ..++.+....+++++.+.+  ++|.|++++++.+...+..+. .+-++++.++++-++.|+|.+...+....|+.+..  
T Consensus       207 l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~--  284 (742)
T TIGR01299       207 LGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFL--  284 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence            4566677778888888877  999999999998877766544 33456777888899999999999999999998886  


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                              ..+.+++..++...++.+|.+++.+++..+
T Consensus       285 --------p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       285 --------AQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    356788889988888888888887765544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.70  E-value=5.7e-05  Score=72.11  Aligned_cols=102  Identities=17%  Similarity=0.164  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-c---cceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-P---RFYTLVPAGILVGIGAAPMWAAKATYLTQV  262 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p---~~y~li~as~l~G~gagllW~aqg~ylt~~  262 (314)
                      ..++.+....++.++...+  ++|+|+.++++.+...+-.....+ +   ..+.++.+-++.|+|.+..++..-.++++.
T Consensus        76 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~  155 (481)
T TIGR00879        76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEI  155 (481)
T ss_pred             HHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHcc
Confidence            4445555566666666666  999999999988877654443322 2   234678899999999999999888888877


Q ss_pred             hhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       263 s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                      .          .++.+++..+++......+.++|.++.
T Consensus       156 ~----------~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       156 A----------PKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             C----------ChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            6          466788999999888899999988887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10133 L-fucose transporter; Provisional

Probab=97.60  E-value=0.00026  Score=70.39  Aligned_cols=143  Identities=11%  Similarity=0.031  Sum_probs=95.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChh----hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHH
Q psy853          151 ILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLG----TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP  224 (314)
Q Consensus       151 ~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG----~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i  224 (314)
                      .+.-++.+.+.|+..-........+...+.++-++.    -..++..+....++.++.+.+  ++|+|+++.++.+.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            355666666666654444443333333332211222    223344455566666666665  99999999999988877


Q ss_pred             HHhhc----ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          225 YIGFQ----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       225 yi~s~----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                      -....    +-++++.++.+-++.|+|.+.++++...++.+.+          .++.+.+..+++...++++..+|.++.
T Consensus       104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~----------~~~~~~~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------ChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66442    3566777888999999999999999999987664          234444567888888899999998876


Q ss_pred             HHh
Q psy853          301 SLE  303 (314)
Q Consensus       301 ~~i  303 (314)
                      ..+
T Consensus       174 ~~l  176 (438)
T PRK10133        174 QSL  176 (438)
T ss_pred             HHH
Confidence            543

>TIGR00895 2A0115 benzoate transport

Probab=97.59  E-value=0.00027  Score=66.24  Aligned_cols=102  Identities=12%  Similarity=0.216  Sum_probs=77.9

Q ss_pred             HHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853          193 IYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL  269 (314)
Q Consensus       193 lY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~  269 (314)
                      ......++.++.+.+  ++|.|+.++++.+...+.... .+.++.+.++.+.++.|++.+..+++.-+++.+..      
T Consensus        61 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------  134 (398)
T TIGR00895        61 GLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA------  134 (398)
T ss_pred             HHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHc------
Confidence            334455556666666  999999999988766554433 34456667788899999999999999888888775      


Q ss_pred             cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                          .++.+++..+++.....++.++|.++...++
T Consensus       135 ----~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  165 (398)
T TIGR00895       135 ----PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI  165 (398)
T ss_pred             ----CHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence                3567889999999999999999888775543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.54  E-value=0.00047  Score=67.64  Aligned_cols=100  Identities=15%  Similarity=0.187  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccce--------ehhhhHHHhccCchhhhchhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFY--------TLVPAGILVGIGAAPMWAAKATY  258 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y--------~li~as~l~G~gagllW~aqg~y  258 (314)
                      .++.|....+++++...+  ++|.|+++.++.+.+.+..... +.|+..        .++..=++.|+|.|..|++..+|
T Consensus        69 ~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~  148 (432)
T PRK10406         69 FAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATY  148 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHH
Confidence            455566666788777777  9999999999999997776553 335432        46778899999999999999999


Q ss_pred             HhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy853          259 LTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLI  299 (314)
Q Consensus       259 lt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLI  299 (314)
                      +.+..          .++.|+++.++.......+.+++.++
T Consensus       149 i~e~~----------p~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        149 MSEVA----------VEGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             HHHhC----------CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            98876          24556777666655555555544443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.53  E-value=0.00033  Score=65.89  Aligned_cols=106  Identities=9%  Similarity=0.065  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      ..++.+....++.++.+.+  ++|.|+.++++.+...+-.... +.++.+.++...++.|++.+..+++...++.+..  
T Consensus        45 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--  122 (385)
T TIGR00710        45 TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIY--  122 (385)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhc--
Confidence            3444445556666677666  9999999999887766555433 3456677788899999999999998888887765  


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                              .++.+++..++.......+.++|..+...+.
T Consensus       123 --------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710       123 --------PGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             --------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    3567889999999999999888887776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.52  E-value=0.00021  Score=68.59  Aligned_cols=141  Identities=14%  Similarity=0.208  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHH----HHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853          153 KNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAA----LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI  226 (314)
Q Consensus       153 ~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~----~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi  226 (314)
                      ++++.+.++.++.-.++....-+-..+.++-|........+...    ..++.++.+.+  ++|.|+.+.++.+.+.+-.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~   85 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC   85 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666655544333333233222222223333333333333    44444444444  9999999999988887544


Q ss_pred             hh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          227 GF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       227 ~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      .. -+.++.+.++++-++.|++.+..|+.....+.+..          .++.+++..+++......+..+|.++...+
T Consensus        86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSG----------TSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33 44567788888999999999999987555544433          245688999999888898988888877654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.49  E-value=0.00042  Score=69.42  Aligned_cols=136  Identities=11%  Similarity=0.062  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhcccCCCC-----hhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853          153 KNIGSLSLAFMVQFTAFQGTANLQSSINAKEG-----LGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY  225 (314)
Q Consensus       153 ~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~-----lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy  225 (314)
                      +-+....+++++.+....+...+...+.++-+     .|.. .++.+....++.++...+  ++|+|+.++++.+...+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~-~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~  114 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNA-GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA  114 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            34444444555555444444333333322212     2322 233334455566666666  999999999988777665


Q ss_pred             Hhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          226 IGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       226 i~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                      ... -+.++.+.++.+-++.|++.+.... ...++++..          .++.+++..|++....+.+..+|.++.
T Consensus       115 ~~~~~~~~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~----------~~~~rg~a~g~~~~~~~~g~~~~~~~~  179 (476)
T PLN00028        115 VFCMSLVSSATGFIAVRFFIGFSLATFVS-CQYWMSTMF----------NGKIVGTANGIAAGWGNLGGGVTQLLM  179 (476)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhc----------ChhheeHHHHHHHHHHHHHHHHHHHHH
Confidence            543 3344566667777888988875432 223444332          234567777776655555555554433

>PRK12382 putative transporter; Provisional

Probab=97.47  E-value=0.00029  Score=67.56  Aligned_cols=102  Identities=16%  Similarity=0.129  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHH----HHhhccc-----ccceehhhhHHHhccCchhhhchhhhhH
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP----YIGFQFY-----PRFYTLVPAGILVGIGAAPMWAAKATYL  259 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i----yi~s~~y-----p~~y~li~as~l~G~gagllW~aqg~yl  259 (314)
                      ++.+....+++.+...+  ++|.|+.+.++.+...+    |..+.+.     ++.+.++.+.++.|++.+..+++..+++
T Consensus        58 s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  137 (392)
T PRK12382         58 GIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWG  137 (392)
T ss_pred             HHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555  99999999988776543    2222222     3456678889999999999998877776


Q ss_pred             hhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          260 TQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       260 t~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                      .+..          +++.+++..++.......+.++|.++...
T Consensus       138 ~~~~----------~~~~r~~a~~~~~~~~~~g~~~g~~~~~~  170 (392)
T PRK12382        138 LGLV----------GPKHSGKVMSWNGMAMYGALAAGAPLGLL  170 (392)
T ss_pred             HhhC----------CccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            5554          24456777777666666666666665543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.47  E-value=0.00034  Score=68.93  Aligned_cols=108  Identities=13%  Similarity=0.128  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc----ccccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQV  262 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~  262 (314)
                      ..+..+....+++++.+.+  |+|+|+++++|.+.+++-.+..    ..++++.++.+..+.|+|.+.++++...|+.+.
T Consensus        43 l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~  122 (410)
T TIGR00885        43 VQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVM  122 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHH
Confidence            3355556666667666666  9999999999988776544432    234566778889999999999999999999887


Q ss_pred             hhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853          263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL  306 (314)
Q Consensus       263 s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~  306 (314)
                      +          .++.+++..++...++.++..+|.++...+...
T Consensus       123 ~----------~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885       123 G----------PESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             C----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6          356678889999999999999999998877543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.47  E-value=0.00043  Score=67.54  Aligned_cols=93  Identities=17%  Similarity=0.186  Sum_probs=73.1

Q ss_pred             hcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhH
Q psy853          202 IFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAII  278 (314)
Q Consensus       202 ~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~  278 (314)
                      ++...+  ++|.|+.++++.+.+.+......+ ++.+.++...++.|++.+..|++..+++.+..          .++.+
T Consensus        64 ~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~  133 (400)
T PRK11646         64 IFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLI----------RPHQR  133 (400)
T ss_pred             hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHHHH
Confidence            444444  999999999999988776665443 45667788899999999999988888876664          35678


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          279 VRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       279 gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ++..|+.....+.+..+|..+...+.
T Consensus       134 ~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        134 GRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999988776553

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.46  E-value=0.0014  Score=59.91  Aligned_cols=142  Identities=17%  Similarity=0.150  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhcccCC-CChhhHHHHHHHHH----HHHhhhcccee--eeccce-eeeehhhhhHHH
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSSINAK-EGLGTVSLSAIYAA----LVLSCIFVPTF--RLTVKW-TLCVSMMCYLPY  225 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSSin~~-~~lG~~slailY~~----~~is~~f~P~I--~lG~K~-sLvig~l~Y~iy  225 (314)
                      .++.+.+..++....+............+ .+......+.++..    ..++.++.+.+  |+|.|+ .+.++.+.+.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444444444444444444443332111 12223333333333    44444555555  899999 888877766555


Q ss_pred             Hhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          226 IGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       226 i~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      .... +.++.+.+++..++.|++.+..|+....++.+..          +++.+++..|+.......+..+|..+...+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~  325 (352)
T cd06174         256 LLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA----------PPEARGTASGLFNTFGSLGGALGPLLAGLLL  325 (352)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4433 3344667788999999999999999999887776          3578999999999999999999999988776


Q ss_pred             h
Q psy853          305 V  305 (314)
Q Consensus       305 ~  305 (314)
                      .
T Consensus       326 ~  326 (352)
T cd06174         326 D  326 (352)
T ss_pred             c
Confidence            4

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2533|consensus

Probab=97.45  E-value=0.00039  Score=71.22  Aligned_cols=109  Identities=15%  Similarity=0.132  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853          187 TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG  263 (314)
Q Consensus       187 ~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s  263 (314)
                      .....+.|..++++-+....+  ++...+.|....++..++.... +.-+.+.++.-=+++|+..|..|++.-.|+...=
T Consensus        84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy  163 (495)
T KOG2533|consen   84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWY  163 (495)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhc
Confidence            345667788888888766666  8888888888888888888444 4444566677789999999999999999986654


Q ss_pred             hhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       264 ~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                                .++.+++-.|+|++..++|.++|++|++.+.+
T Consensus       164 ----------~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~  195 (495)
T KOG2533|consen  164 ----------GKSERGLRMGIWYASASLGNIFGGLIAYGVFK  195 (495)
T ss_pred             ----------ChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence                      36778999999999999999999999999876

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.42  E-value=0.00051  Score=65.55  Aligned_cols=102  Identities=13%  Similarity=0.010  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      ++.+....+++++...+  ++|.|+.++++.+.+++...... -++++.++.+.++.|++.+. +.....++.+..    
T Consensus        61 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~----  135 (408)
T PRK09874         61 SITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGF-VPNANALIATQV----  135 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhc----
Confidence            34444455555555555  99999999998887766554432 34566778888889987653 444334433332    


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                            .++.+++..++.....+.+.++|..+...+
T Consensus       136 ------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  165 (408)
T PRK09874        136 ------PRNKSGWALGTLSTGGVSGALLGPLAGGLL  165 (408)
T ss_pred             ------CHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  245577888888777777777777665543

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.41  E-value=0.00036  Score=67.40  Aligned_cols=103  Identities=14%  Similarity=0.180  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      ..++.+....++.++.+.+  ++|.|+.++++.+...+.... .+.++.+.++.+-.+.|++.+..+++...++++..  
T Consensus        58 ~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~--  135 (426)
T PRK12307         58 LATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESW--  135 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC--
Confidence            3344455556666666666  999999999999887765543 33456677888999999999999998888887775  


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS  301 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~  301 (314)
                              .++.+++..+++.....++.++|..+..
T Consensus       136 --------~~~~r~~~~~~~~~~~~lg~~~~~~l~~  163 (426)
T PRK12307        136 --------PKHLKSKASAFLVSGFGIGNIIAAYFMP  163 (426)
T ss_pred             --------CHhHhhHhhhHHHHHHhHHHHHHHHHHH
Confidence                    3566889999988888888888876543

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.40  E-value=0.00029  Score=65.24  Aligned_cols=106  Identities=17%  Similarity=0.150  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      ..++.+....++.++.+.+  ++|.|+.++++.+.+.+..... +.++.+.++.+-++.|++.+..+++...++.+..  
T Consensus        34 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--  111 (399)
T TIGR00893        34 VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWF--  111 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhC--
Confidence            3344445556666666666  9999999999988776655443 3456777888999999999999999999988876  


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                              .++.+++..+++.....++.++|..+...+.
T Consensus       112 --------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  142 (399)
T TIGR00893       112 --------PASERATAVSIFNSAQGLGGIIGGPLVGWIL  142 (399)
T ss_pred             --------CHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence                    3567899999999999999999888776544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.40  E-value=0.00085  Score=64.38  Aligned_cols=99  Identities=13%  Similarity=0.094  Sum_probs=73.7

Q ss_pred             HHHHHHHhhhcccee--eeccceeeeehhhhhHHHH-hhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853          193 IYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI-GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL  269 (314)
Q Consensus       193 lY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi-~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~  269 (314)
                      .+....+++++...+  ++|.|+.+.++.+...+-. +..+.++++.++..-++.|++.+..++....++.+..      
T Consensus        59 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~------  132 (406)
T PRK11551         59 GILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAV------  132 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc------
Confidence            334445555555555  9999999999987765543 3344566777888999999999999988888887765      


Q ss_pred             cccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853          270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISS  301 (314)
Q Consensus       270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~  301 (314)
                          .++.+++..++++.....+.++|.++..
T Consensus       133 ----~~~~r~~~~~~~~~~~~~g~~~~~~~~~  160 (406)
T PRK11551        133 ----GPRLRGTAVSLMYCGVPFGGALASVIGV  160 (406)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3567888888888888888777776653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.40  E-value=0.00036  Score=65.46  Aligned_cols=140  Identities=13%  Similarity=0.118  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHH----HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVS----LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI  226 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~s----lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi  226 (314)
                      +.....+++++.+..+.....+... +.++-|+....    .++.+....++.++...+  ++|.|+.++++.+...+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4455666677666666555544432 32222222222    333444455555666655  9999999999988777665


Q ss_pred             hhc-ccc-cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          227 GFQ-FYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       227 ~s~-~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ... +-+ +++.++.+.++.|++.+. +.....++++..          .++.+++..+++....+++..+|.++...+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFF----------PKKIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhc----------CHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            443 234 666778888999998765 444445555544          3456788888888777777777776654433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.39  E-value=0.0014  Score=60.54  Aligned_cols=101  Identities=15%  Similarity=0.150  Sum_probs=72.0

Q ss_pred             HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccc-cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853          194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL  269 (314)
Q Consensus       194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~  269 (314)
                      .....++.++.+.+  +.+.|+.+.++.+...+..... +.+ +.+.+++..++.|++.+..++...+++.+..      
T Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------  330 (365)
T TIGR00900       257 GLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRV------  330 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence            33344555566655  8888888877654443332222 223 2566678889999999988888777777765      


Q ss_pred             cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                          .++.+++..|++..+.+.+..+|..+...+.
T Consensus       331 ----~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       331 ----PAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                4677899999999999999999998877654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.39  E-value=0.00064  Score=65.18  Aligned_cols=105  Identities=16%  Similarity=0.036  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH----hhcccc-----cceehhhhHHHhccCchhhhchhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI----GFQFYP-----RFYTLVPAGILVGIGAAPMWAAKATY  258 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi----~s~~yp-----~~y~li~as~l~G~gagllW~aqg~y  258 (314)
                      .++.+....++.++.+.+  ++|+|+.++++.+.+.+-.    .+.+..     +.+.++...++.|++.+..+++...+
T Consensus        57 ~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  136 (399)
T PRK05122         57 ISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILW  136 (399)
T ss_pred             HHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHH
Confidence            334444455556666665  9999999999987665422    222211     34456888899999999999888777


Q ss_pred             HhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          259 LTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       259 lt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      +.+..          .++.+++..++.......+.++|..+...+.
T Consensus       137 ~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  172 (399)
T PRK05122        137 GIGRV----------GALHTGRVISWNGIATYGALAIGAPLGVLLY  172 (399)
T ss_pred             HHhhc----------ChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            65553          2456777777777777777777777665543

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.39  E-value=0.0019  Score=59.77  Aligned_cols=59  Identities=12%  Similarity=-0.018  Sum_probs=41.0

Q ss_pred             eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          235 YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       235 y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      +..+....+.+++.+ .++..-+++.+..          .++.+++..|+...+.+++..+|+.+...+.
T Consensus       313 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~  371 (399)
T TIGR00893       313 YAALALVALGFFGLG-AGAIGWALISDNA----------PGNIAGLTGGLINSLGNLGGIVGPIVIGAIA  371 (399)
T ss_pred             HHHHHHHHHHHhchh-hhhHHHHHHHhhc----------ChhHHHHHHHHHHHHHHHhhhhhhHHhhhhc
Confidence            333333444444444 6666666666654          3667899999999999999999998877654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.38  E-value=0.0011  Score=63.80  Aligned_cols=103  Identities=13%  Similarity=0.033  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhh----hcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853          191 SAIYAALVLSC----IFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG  263 (314)
Q Consensus       191 ailY~~~~is~----~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s  263 (314)
                      +.+++...++.    ++.+.+  ++|.|..++++.++..+-.... +.++.+.++...++.|++.+.+|++--.|+.+. 
T Consensus       243 g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-  321 (382)
T TIGR00902       243 GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-  321 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence            33444444443    344444  8999999999998887655443 355667788899999999999999976666543 


Q ss_pred             hhhhhhcccchhhhHHHHHHHHHH-HHHhhHHHHHHHHHHhh
Q psy853          264 AVYAKLTDQAVDAIIVRFFGFFFL-AWQTAELWGNLISSLET  304 (314)
Q Consensus       264 ~~y~~~~~~~~~~~~gr~~giF~~-~~q~s~iiGnLIs~~il  304 (314)
                                .++.+++..+++.. ....+.++|++++..+.
T Consensus       322 ----------~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~  353 (382)
T TIGR00902       322 ----------PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY  353 (382)
T ss_pred             ----------CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      24556788888763 56788888888887654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.38  E-value=0.00057  Score=67.49  Aligned_cols=141  Identities=17%  Similarity=0.276  Sum_probs=93.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChh----hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853          152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLG----TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY  225 (314)
Q Consensus       152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG----~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy  225 (314)
                      ++.+..+.+++++....+.....+...+.++-++.    ....++.+....+++++...+  ++|.|+.++++.+..++-
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   98 (496)
T PRK03893         19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG   98 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            34555666666655554444443333332221222    223334445556666666666  999999999888766544


Q ss_pred             Hhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          226 IGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       226 i~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                      ... -+.++.+.++.+-++.|++.+..+.+...++.+..          .++.+++..+++.....++.++|..+...
T Consensus        99 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  166 (496)
T PRK03893         99 TLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW----------PKHLRNKASGFLISGFSIGAVVAAQVYSL  166 (496)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433 33456677888999999999999999888887765          35667888888888888888888765543

>PRK10504 putative transporter; Provisional

Probab=97.36  E-value=0.00065  Score=66.86  Aligned_cols=142  Identities=14%  Similarity=0.117  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhh----HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853          153 KNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGT----VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI  226 (314)
Q Consensus       153 ~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~----~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi  226 (314)
                      ++++.+.+++++....+.........+.++-|...    ...+.......++.++.+.+  ++|.|+.++++.+.+.+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            35677777777665554444333333222111111    22233334456666666666  9999999998876665443


Q ss_pred             hh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          227 GF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       227 ~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      +. .+-++.+.++.+-++.|++.+..+.....++.+..          .++.+++..|+.......+.++|..+...+.
T Consensus        90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIV----------PREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            32 33456677788899999999999988777766654          3456778888888888888888877765543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.33  E-value=0.00091  Score=61.70  Aligned_cols=98  Identities=12%  Similarity=0.099  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccccc----ceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPR----FYTLVPAGILVGIGAAPMWAAKATYLTQVG  263 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~----~y~li~as~l~G~gagllW~aqg~ylt~~s  263 (314)
                      .++......++.++.+.+  |++.|..+.+...+..+......+..    .+..+...++.|++.+..++..-.++.+..
T Consensus       249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  328 (352)
T PF07690_consen  249 FSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELV  328 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333344444445555655  88888788777777776666654432    244566888899999999888888877765


Q ss_pred             hhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy853          264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGN  297 (314)
Q Consensus       264 ~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGn  297 (314)
                                .++.+++..|++..+.+++..+|.
T Consensus       329 ----------~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  329 ----------PPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             ----------HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHHHHHHHHHHCC
Confidence                      467899999999988888888774

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.32  E-value=0.00098  Score=65.55  Aligned_cols=102  Identities=11%  Similarity=0.043  Sum_probs=74.2

Q ss_pred             HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853          192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK  268 (314)
Q Consensus       192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~  268 (314)
                      +......++.++...+  ++|.|+.+.++.+...+..... +-++.+.++..-++.|++.|..|++...++.+..     
T Consensus        66 ~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~-----  140 (434)
T PRK11663         66 LFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWY-----  140 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhC-----
Confidence            4444456666666666  9999999999988877655443 3455666666777888888888888777776654     


Q ss_pred             hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                           .++.+++..|++......+.++|.++...+
T Consensus       141 -----~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  170 (434)
T PRK11663        141 -----SRTERGGWWAIWNTAHNVGGALIPLVVGAI  170 (434)
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 356688889999888888888887765544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.32  E-value=0.00025  Score=70.45  Aligned_cols=98  Identities=10%  Similarity=-0.036  Sum_probs=63.2

Q ss_pred             HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHh--hc----ccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853          192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIG--FQ----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG  263 (314)
Q Consensus       192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~--s~----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s  263 (314)
                      +.+..++++.++...+  ++|.|+.+.++.+...+...  +.    +-++.+.++..-++.|++.+..|++...++.+..
T Consensus        72 ~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (467)
T PRK09556         72 GFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWT  151 (467)
T ss_pred             HHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Confidence            3455566667777766  99999998777655443322  21    2356777788888999999999998888876665


Q ss_pred             hhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy853          264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLI  299 (314)
Q Consensus       264 ~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLI  299 (314)
                                .++.+++..|++.....++.++|+++
T Consensus       152 ----------~~~~rg~a~gi~~~~~~lG~~l~~~i  177 (467)
T PRK09556        152 ----------PRRKRGRFLGFWNISHNLGGAGAGGV  177 (467)
T ss_pred             ----------CccceeeeEEeeecccchhhhHHHHH
Confidence                      23344555555544444444444433

>PRK10054 putative transporter; Provisional

Probab=97.32  E-value=0.00068  Score=66.02  Aligned_cols=141  Identities=7%  Similarity=0.018  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHH----HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVS----LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI  226 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~s----lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi  226 (314)
                      +++.+-++.++...++.....+.+. +.++-|.....    .++.+....+.+.+...+  ++|.|+.++++.+...+-.
T Consensus         8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~   87 (395)
T PRK10054          8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF   87 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence            4556666666666665554443332 11111222222    222233444555556655  9999999999888775533


Q ss_pred             hh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          227 GF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       227 ~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      +. -+.++++.++..-.+.|.+.+..+.+..++..+..          .++.+++..|+.....+++.++|..+...+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         88 IAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNL----------SSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 23445555555555666666666665555554443          3557889999999999999999988877654

>PRK15075 citrate-proton symporter; Provisional

Probab=97.30  E-value=0.00098  Score=65.43  Aligned_cols=96  Identities=16%  Similarity=0.179  Sum_probs=73.0

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccce--------ehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFY--------TLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y--------~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      .+++++.+.+  ++|.|+.++++.+.+.+..+..- .++.+        .++.+-++.|++.+..|++...|+++..   
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~---  146 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA---  146 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC---
Confidence            4667777666  99999999999998877665543 33433        3467789999999999998888888776   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                             .++.+++..+++....+.+..+|.++...+
T Consensus       147 -------p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        147 -------TPGRKGFYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             -------CcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   356788999988888777777766665544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.26  E-value=0.0036  Score=58.03  Aligned_cols=103  Identities=14%  Similarity=0.074  Sum_probs=68.2

Q ss_pred             HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccc--eehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRF--YTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~--y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      +......++.++.+.+  |+|.|+.+.++.+...+-..... .+..  +.++...++.|++.+..+.....++.+..   
T Consensus       248 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~---  324 (377)
T TIGR00890       248 ISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIF---  324 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHh---
Confidence            3334445556666666  89999998887766655443322 2221  22334556777777777765555555543   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                             .++.+++..|++.....++..+|+++...+.
T Consensus       325 -------~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  355 (377)
T TIGR00890       325 -------GPANSAANYGFLYTAKAVAGIFGGLIASHAL  355 (377)
T ss_pred             -------hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3567899999999999999999998887654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.22  E-value=0.00084  Score=70.41  Aligned_cols=101  Identities=18%  Similarity=0.223  Sum_probs=77.8

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccc----------------------------------------
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYP----------------------------------------  232 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp----------------------------------------  232 (314)
                      ...++..+++..+  +.|.|+.+.+|.+.+.+-.+.+..|                                        
T Consensus        79 i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  158 (633)
T TIGR00805        79 IGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQC  158 (633)
T ss_pred             HHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccc
Confidence            3344555556555  9999999999987765544333222                                        


Q ss_pred             ------------cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          233 ------------RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       233 ------------~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                                  .++.++.+-++.|+|.+++|+...+|+.++.          .++.++++.|++.....++.++|.++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~----------~~~~~~~~~~i~~~~~~iG~~lG~llg  228 (633)
T TIGR00805       159 PSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFA----------KSKNSPLYIGILESIAVFGPAFGYLLG  228 (633)
T ss_pred             ccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccC----------CccccHHHHHHHHHHHHhhhHHHHHHH
Confidence                        1234568999999999999999999998886          356789999999999999999999998


Q ss_pred             HHhhh
Q psy853          301 SLETV  305 (314)
Q Consensus       301 ~~il~  305 (314)
                      ..++.
T Consensus       229 g~l~~  233 (633)
T TIGR00805       229 SFCLQ  233 (633)
T ss_pred             HHHHh
Confidence            87774

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.21  E-value=0.0009  Score=64.95  Aligned_cols=103  Identities=12%  Similarity=0.120  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853          188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGA  264 (314)
Q Consensus       188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~  264 (314)
                      ...++.+..+.++.++.+.+  ++|.|+++.++.+.+++-.+. -+-|+++.++.+-++.|+|.+..++....++.+.- 
T Consensus        48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~-  126 (393)
T PRK09705         48 LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRF-  126 (393)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHc-
Confidence            34555566677777777777  999999999999988776654 45678888899999999999999988877764432 


Q ss_pred             hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853          265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS  301 (314)
Q Consensus       265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~  301 (314)
                                ++.+++..|++......+..+|.++..
T Consensus       127 ----------~~~~~~~~g~~~~~~~~g~~~g~~~~~  153 (393)
T PRK09705        127 ----------QQRTPLVMGLWSAALMGGGGLGAAITP  153 (393)
T ss_pred             ----------cccchhHHHHHHHHHHHHHHHHHHHHH
Confidence                      234677777777666666666665544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.19  E-value=0.0013  Score=64.56  Aligned_cols=106  Identities=11%  Similarity=0.086  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-------------ccceehhhhHHHhccCchhhhc
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-------------PRFYTLVPAGILVGIGAAPMWA  253 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-------------p~~y~li~as~l~G~gagllW~  253 (314)
                      ..++.+....++.++...+  ++|.|++++++.+.+.+-.....+             +..+.++.+-++.|++.|..++
T Consensus        60 ~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~  139 (479)
T PRK10077         60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASM  139 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhh
Confidence            3344444455555666655  999999999999888765443222             2234567888999999999999


Q ss_pred             hhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          254 AKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       254 aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ...+|+.+..          .++.+++..++......++.+++.+++.++.
T Consensus       140 ~~~~~i~e~~----------~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  180 (479)
T PRK10077        140 LSPMYIAEIA----------PAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA  180 (479)
T ss_pred             HHHHHHHhhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998887          3567888888888777777777766555443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.18  E-value=0.0009  Score=65.51  Aligned_cols=103  Identities=13%  Similarity=0.115  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      ++......++.++.+.+  ++|.|+.++++.+.+.+-... .+.++.+.++.+-++.|++.+..++..-+++.+..    
T Consensus        44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~----  119 (485)
T TIGR00711        44 TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY----  119 (485)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHC----
Confidence            33444455556666665  999999999999888765543 34466777889999999999999999888888776    


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                            .++.+++..+++......+.++|..+...+
T Consensus       120 ------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  149 (485)
T TIGR00711       120 ------PPEKRGRAMAIWGLTVLVAPALGPTLGGWI  149 (485)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence                  356789999999999999998888776544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=97.16  E-value=0.00069  Score=63.97  Aligned_cols=84  Identities=10%  Similarity=0.021  Sum_probs=63.5

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHHHHhhccc------------ccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY------------PRFYTLVPAGILVGIGAAPMWAAKATYLTQV  262 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y------------p~~y~li~as~l~G~gagllW~aqg~ylt~~  262 (314)
                      ..++.++.+.+  ++|.|+.++++.++.++......+            +..+.++.+.++.|++.+..+++..+++.+.
T Consensus       258 ~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  337 (356)
T TIGR00901       258 AILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKL  337 (356)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            34666777777  999999988888766554433221            3345567778888999999999999999988


Q ss_pred             hhhhhhhcccchhhhHHHHHHHHHHHHH
Q psy853          263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQ  290 (314)
Q Consensus       263 s~~y~~~~~~~~~~~~gr~~giF~~~~q  290 (314)
                      +          +++.+++.+|++.++.+
T Consensus       338 ~----------p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       338 S----------NPKFGATQMALLSSLSA  355 (356)
T ss_pred             c----------CCCccHHHHHHHHHHHh
Confidence            7          57889999999876553

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.16  E-value=0.0047  Score=61.72  Aligned_cols=106  Identities=13%  Similarity=0.134  Sum_probs=70.9

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHHHHhhc-----cccc-ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-----FYPR-FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK  268 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-----~yp~-~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~  268 (314)
                      ..++.++.+.+  ++|.|.+++++.+...+-.+..     .-+. .+.+++..++.|++.+..|...-+++.+.......
T Consensus       279 ~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~  358 (473)
T PRK10429        279 NLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEY  358 (473)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            34444555655  8999999887765443222111     1122 34556788899999999999988888887632221


Q ss_pred             hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                      +++   .+.-|.++|....+..+++.+|+.+...++-
T Consensus       359 ~tG---~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        359 KLG---IRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             hcC---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222   3345668888888889999999988887763

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.15  E-value=0.0026  Score=62.71  Aligned_cols=110  Identities=13%  Similarity=0.058  Sum_probs=81.2

Q ss_pred             hhhHHHHHHHHHHHHhhh----cccee--eeccceeeeehhhhhHHHHhhcc---cccceehhhhHHHhccCchhhhchh
Q psy853          185 LGTVSLSAIYAALVLSCI----FVPTF--RLTVKWTLCVSMMCYLPYIGFQF---YPRFYTLVPAGILVGIGAAPMWAAK  255 (314)
Q Consensus       185 lG~~slailY~~~~is~~----f~P~I--~lG~K~sLvig~l~Y~iyi~s~~---yp~~y~li~as~l~G~gagllW~aq  255 (314)
                      ......+.++..+.++..    +...+  ++|.|+.+.++.+...+......   ....+.++..-++.|++.+..|++.
T Consensus        73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~  152 (465)
T TIGR00894        73 WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPAT  152 (465)
T ss_pred             CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhH
Confidence            334444555555444444    44444  99999999999887666554321   2335567888999999999999999


Q ss_pred             hhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          256 ATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       256 g~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ..++.+..          .++.+++..|++....+++.++|.++...+.
T Consensus       153 ~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~  191 (465)
T TIGR00894       153 HKIIVKWA----------PPKERSRLLGMSTSGFQLGTFIFLPISGWLC  191 (465)
T ss_pred             HHHHHhcC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888775          3577999999999999999999998877654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.15  E-value=0.0021  Score=61.73  Aligned_cols=103  Identities=13%  Similarity=0.065  Sum_probs=65.1

Q ss_pred             HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853          192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK  268 (314)
Q Consensus       192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~  268 (314)
                      +......++.++.+.+  ++|.|+.+.++.+...+.... .+.+..+.++...++.|++.+..++..-++..+..     
T Consensus       263 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----  337 (406)
T PRK11551        263 AFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFY-----  337 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc-----
Confidence            3334455566666666  899999887765544333222 23344455566667777765554444444443332     


Q ss_pred             hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                           .++.+++..|+...+..++..+|+.+...+.
T Consensus       338 -----p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  368 (406)
T PRK11551        338 -----PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLL  368 (406)
T ss_pred             -----chhhhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence                 3567899999999999999999998877554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.14  E-value=0.0025  Score=62.71  Aligned_cols=102  Identities=13%  Similarity=0.010  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-----ccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-----PRFYTLVPAGILVGIGAAPMWAAKATYLTQV  262 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-----p~~y~li~as~l~G~gagllW~aqg~ylt~~  262 (314)
                      .++.+....+++++...+  ++|.|+.++++.+.+.+-......     .+.+.++..-.+.|++.+..|.....++.+.
T Consensus        67 ~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~  146 (438)
T TIGR00712        67 LSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHW  146 (438)
T ss_pred             HHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHh
Confidence            334444555666666655  999999999887665554333211     2334456677788999999998877777665


Q ss_pred             hhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853          263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS  301 (314)
Q Consensus       263 s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~  301 (314)
                      .          .++.+++..+++....+.+..+|+.+..
T Consensus       147 ~----------~~~~rg~~~~~~~~~~~~g~~~~~~l~~  175 (438)
T TIGR00712       147 W----------SQSERGTIVSIWNCAHNIGGGIPPLLVL  175 (438)
T ss_pred             c----------CcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence            4          2456788888888777777777665443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.11  E-value=0.0019  Score=62.90  Aligned_cols=97  Identities=23%  Similarity=0.157  Sum_probs=71.3

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhccc
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQ  272 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~  272 (314)
                      ..+++...+...+  ++|.|+.|+++.+.+.+-.+.......  .+..-++.|++.+..+++..+++.+..         
T Consensus        49 l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~---------  117 (393)
T PRK11195         49 LAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELL---------  117 (393)
T ss_pred             HHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence            3345555555555  999999999999887654433222111  145567899999999999999998876         


Q ss_pred             chhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          273 AVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       273 ~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                       .++.+++..|+.....+.+.++|..+...+
T Consensus       118 -~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195        118 -PGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             467799999999999998888887765433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.11  E-value=0.0015  Score=60.47  Aligned_cols=101  Identities=11%  Similarity=0.033  Sum_probs=75.1

Q ss_pred             HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccc-----cceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYP-----RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp-----~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      .....++.++.+.+  ++|.|+.++++.+...+-... .+.+     +.+.++.+.++.|++.+..+++..+++.+..  
T Consensus        44 ~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--  121 (365)
T TIGR00900        44 MLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLV--  121 (365)
T ss_pred             HHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence            33444555555555  999999999887765432221 2222     6677888999999999999999999988876  


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                              +++.+++..+++....+.+.++|.++...+.
T Consensus       122 --------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900       122 --------PEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             --------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                    3567899999999999999998888766543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.10  E-value=0.0024  Score=61.57  Aligned_cols=105  Identities=13%  Similarity=0.077  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      ..++.+....++.++...+  ++|.|+.++++.+.+.+.... .+-++.+.++....+.|++.+..++....++.+..  
T Consensus        53 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~--  130 (406)
T PRK15402         53 SMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESF--  130 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHh--
Confidence            3445555566666666666  999999999988776655443 33455667788899999999988877666665543  


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                              +++.+.+..++.......+..+|.++...+
T Consensus       131 --------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  160 (406)
T PRK15402        131 --------EEADAIKITALMANVALLAPLLGPLVGAAL  160 (406)
T ss_pred             --------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    234556667777777777777777765543

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.09  E-value=0.0076  Score=56.58  Aligned_cols=96  Identities=5%  Similarity=0.005  Sum_probs=65.2

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV  274 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~  274 (314)
                      .++.++.+.+  |+|.|+.+.++.+...+..... +.++.+.++...++.|++.+..++....++.+..           
T Consensus       249 ~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-----------  317 (375)
T TIGR00899       249 IPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLM-----------  317 (375)
T ss_pred             HHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------
Confidence            3344555555  9999998887766555443332 2344555666777888888887765555554443           


Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          275 DAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ++.+++..+++....+++..+|..+...+.
T Consensus       318 ~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~  347 (375)
T TIGR00899       318 PGRAGAATTLYTNTGRVGWIIAGSVGGILA  347 (375)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234568899999999999999998877654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.09  E-value=0.0018  Score=61.14  Aligned_cols=102  Identities=10%  Similarity=-0.020  Sum_probs=67.1

Q ss_pred             HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-ccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853          194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL  269 (314)
Q Consensus       194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~  269 (314)
                      .....++.++.+.+  ++|.|+.++++.+...+.... ... ...+.+..+..+.|+..+..|.....++.+..      
T Consensus       284 ~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  357 (405)
T TIGR00891       284 NIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYF------  357 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhC------
Confidence            33445556666666  999999988877654332222 112 23334444546666666666666666666554      


Q ss_pred             cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                          .++.+++..|+.+.+.+.+..+|+++...+.-
T Consensus       358 ----~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       358 ----PTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             ----CcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                35678999999999999999999998876643

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.08  E-value=0.0026  Score=64.72  Aligned_cols=144  Identities=10%  Similarity=-0.046  Sum_probs=98.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcccC-CCChhhH----HHHHHHHHHHHhhhcccee--eeccceeeeeh
Q psy853          146 KEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINA-KEGLGTV----SLSAIYAALVLSCIFVPTF--RLTVKWTLCVS  218 (314)
Q Consensus       146 ~~k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~-~~~lG~~----slailY~~~~is~~f~P~I--~lG~K~sLvig  218 (314)
                      +.|+-..+|++..-++|++.|..+....-+...+.+ +-++...    ..++.+...++.-+....+  ++|.|+.+.++
T Consensus        27 ~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~  106 (462)
T PRK15034         27 KGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFS  106 (462)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            345445578888889999999999988877665543 1222222    2223334445554434444  99999999998


Q ss_pred             hhhhHHHHhhccc------ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhh
Q psy853          219 MMCYLPYIGFQFY------PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTA  292 (314)
Q Consensus       219 ~l~Y~iyi~s~~y------p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s  292 (314)
                      .+...+-....-+      ++++.+++..++.|++ +..|++.-..++..-          .++.+|+..|++.+...++
T Consensus       107 ~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf----------p~~~rG~A~Gi~~g~G~~G  175 (462)
T PRK15034        107 TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFF----------PKAKQGSALGINGGLGNLG  175 (462)
T ss_pred             HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC----------CHhHhHHHHHHHHHHHhhH
Confidence            8876655544332      6777889999999997 668877666665543          3667999999998777777


Q ss_pred             HHHHHHHH
Q psy853          293 ELWGNLIS  300 (314)
Q Consensus       293 ~iiGnLIs  300 (314)
                      ..++.++.
T Consensus       176 ~~l~~~l~  183 (462)
T PRK15034        176 VSVMQLVA  183 (462)
T ss_pred             HHHHHHHH
Confidence            77666544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.07  E-value=0.0079  Score=57.68  Aligned_cols=100  Identities=13%  Similarity=0.058  Sum_probs=69.3

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD  271 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~  271 (314)
                      ....++.++.+.+  ++|.|+.+.++.++..+-... .+.++.+.++++.++.|++.+..+........+..        
T Consensus       260 ~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~--------  331 (399)
T PRK05122        260 VAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV--------  331 (399)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--------
Confidence            3344555566666  889998888776655543322 23345566678889999999998877666554433        


Q ss_pred             cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          272 QAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       272 ~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                        .++.+++..|++......+..+|+.+...+.
T Consensus       332 --~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  362 (399)
T PRK05122        332 --PPQNRGAALGAYSVFLDLSLGITGPLAGLVA  362 (399)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3677899999999988888888777665443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.07  E-value=0.0018  Score=70.67  Aligned_cols=101  Identities=13%  Similarity=0.068  Sum_probs=77.6

Q ss_pred             HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh----cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF----QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s----~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      ...+.++++++..+  ++|.|+.|+++.+.+.++.+.    .+....+.+++.-++.|++.+..+++..+++.+..    
T Consensus        57 ~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~----  132 (1146)
T PRK08633         57 LLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELV----  132 (1146)
T ss_pred             HHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhc----
Confidence            33345555555555  999999999888766555433    33345677888999999999999999999998886    


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                            .++.+++..|+......++.++|.+++.++.
T Consensus       133 ------~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        133 ------GKENLSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             ------CcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                  3567888899999888888888888877654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.06  E-value=0.0013  Score=66.20  Aligned_cols=143  Identities=10%  Similarity=0.061  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhcc-cCC--CChhhHHHHHHHHHHHHhhhccce----e--e-eccceeeeehhhhhH
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSSI-NAK--EGLGTVSLSAIYAALVLSCIFVPT----F--R-LTVKWTLCVSMMCYL  223 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSSi-n~~--~~lG~~slailY~~~~is~~f~P~----I--~-lG~K~sLvig~l~Y~  223 (314)
                      .+..+-+.-++.-.+|.+...+..-. .++  -|+.....+.+...+.+...+.+.    +  + +|.|++++++.+.++
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~   90 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM   90 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence            34444444444444444433332221 211  233344445555555555555544    3  6 899999999998877


Q ss_pred             HHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          224 PYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       224 iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                      +-.+.... ++.+.++.+-++.|+|.|..+++..+.+.+...   +    ++++.+++.+++++...+.|.++|.++...
T Consensus        91 ~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~---~----~~~~~r~~~~~~~~~~~niG~~ig~~l~g~  163 (475)
T TIGR00924        91 LGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYE---R----GDMPRRDGGFTLFYMSINIGSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcC---C----CCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence            65444333 345556677788999999999988888766541   0    011346677888888888888888777655


Q ss_pred             h
Q psy853          303 E  303 (314)
Q Consensus       303 i  303 (314)
                      +
T Consensus       164 l  164 (475)
T TIGR00924       164 I  164 (475)
T ss_pred             H
Confidence            4

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.06  E-value=0.0016  Score=65.44  Aligned_cols=107  Identities=11%  Similarity=0.061  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-ccc------ceehhhhHHHhccCchhhhchhhhhH
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPR------FYTLVPAGILVGIGAAPMWAAKATYL  259 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~------~y~li~as~l~G~gagllW~aqg~yl  259 (314)
                      ..+..+....+++++...+  ++|+|++++++.+.+.+-..... .++      .+.++.+-++.|++.+..++....|+
T Consensus        61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~  140 (502)
T TIGR00887        61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIIT  140 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3444555566777777777  99999999988877765443222 222      35678888999999999999999999


Q ss_pred             hhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          260 TQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       260 t~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                      ++..          ..+.|++..++......++.++|.++...++.
T Consensus       141 ~e~~----------p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~  176 (502)
T TIGR00887       141 SEFA----------TKKWRGAMMAAVFAMQGFGILAGAIVALIVLA  176 (502)
T ss_pred             HHhc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9887          46789999999999999999999988876543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0254|consensus

Probab=97.06  E-value=0.0026  Score=64.34  Aligned_cols=106  Identities=18%  Similarity=0.259  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853          188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGA  264 (314)
Q Consensus       188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~  264 (314)
                      .-.++.+...++++++...+  ++|.|.+|.++.+.|.+-.+.. +-++.+.++.+-++.|+|.|..=.....|+++.+ 
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia-  171 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA-  171 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC-
Confidence            33445555566777777766  9999999999999887766553 3457888899999999999999999999999998 


Q ss_pred             hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                               ..+.||.+.+++......+..+|.++.++.
T Consensus       172 ---------p~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  172 ---------PAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             ---------ChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                     467899999999888888888886666654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.06  E-value=0.0071  Score=56.07  Aligned_cols=32  Identities=9%  Similarity=-0.127  Sum_probs=26.6

Q ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          274 VDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       274 ~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                      .++.+++..|++..+.+.+..+|+.+...+.-
T Consensus       340 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       340 PKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            35678999999999999999999988776643

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.04  E-value=0.0017  Score=62.51  Aligned_cols=105  Identities=13%  Similarity=0.149  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH-hhcccccceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853          188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI-GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGA  264 (314)
Q Consensus       188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi-~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~  264 (314)
                      ...++.+....++.++.+.+  ++|.|+.+.++.+...+-. +.-+-++++.++.+-++.|++.+..++....++.+.. 
T Consensus        42 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~-  120 (382)
T PRK10091         42 HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKII-  120 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-
Confidence            34556666677777777766  9999999999887765543 2334567788889999999999998877766665554 


Q ss_pred             hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                               +++.+++..++++.....+..+|..++..
T Consensus       121 ---------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  149 (382)
T PRK10091        121 ---------KPGKVTAAVAGMVSGMTVANLLGIPLGTY  149 (382)
T ss_pred             ---------ChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence                     24456777888777777777777665443

>TIGR00897 2A0118 polyol permease family

Probab=97.03  E-value=0.0017  Score=62.94  Aligned_cols=96  Identities=9%  Similarity=0.069  Sum_probs=67.2

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-----ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      ....+++++.+.+  ++|.|+.+.++.+...+-.+..     ..++++.++....+.|+|.+..+.+...++.+..    
T Consensus        59 ~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~----  134 (402)
T TIGR00897        59 IAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT----  134 (402)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC----
Confidence            3346666666666  9999999999888776643321     1345667778888999998887766555555543    


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhH-HHHHHHH
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAE-LWGNLIS  300 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~-iiGnLIs  300 (314)
                            .++.+++..|++......+. ++|.++.
T Consensus       135 ------~~~~~g~~~g~~~~~~~~g~~~~g~~~~  162 (402)
T TIGR00897       135 ------KQDNLSSAVGWFWAVYSIGIGVFGSYYS  162 (402)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  35568888888888877776 4666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.01  E-value=0.0053  Score=59.41  Aligned_cols=108  Identities=8%  Similarity=0.033  Sum_probs=72.3

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc--ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY--PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT  270 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y--p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~  270 (314)
                      ....++.++.+.+  ++|.|+.+.++.+...+-.....+  .+.+.+++..++.|++.+..+...-+++.+.......  
T Consensus       268 i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--  345 (437)
T TIGR00792       268 VAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEW--  345 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--
Confidence            3344555566666  999999988887665543333322  2334556677888888888887777777665421111  


Q ss_pred             ccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          271 DQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       271 ~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                       +..++..|.++|++..+.++++.+|..+...++-
T Consensus       346 -~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       346 -KTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             -hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1123457899999999999999999998887764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.01  E-value=0.0028  Score=63.52  Aligned_cols=101  Identities=10%  Similarity=0.095  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-cccccee--------hhhhHHHhccCchhhhchhhhhH
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYT--------LVPAGILVGIGAAPMWAAKATYL  259 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~--------li~as~l~G~gagllW~aqg~yl  259 (314)
                      ++.|....++.++...+  ++|.|++++++.+.+.+..+.. +-|+++.        ++..=++.|+|.|..|++...|+
T Consensus        64 ~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~  143 (490)
T PRK10642         64 SVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFV  143 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHH
Confidence            66677788888887777  9999999999999988877653 4455442        67778999999999999999999


Q ss_pred             hhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853          260 TQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS  301 (314)
Q Consensus       260 t~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~  301 (314)
                      ++..          .++.+++..+++......|.++|+++..
T Consensus       144 ~e~~----------p~~~Rg~~~~~~~~~~~~G~~lg~~~~~  175 (490)
T PRK10642        144 AEYS----------PDRKRGFMGSWLDFGSIAGFVLGAGVVV  175 (490)
T ss_pred             HHhC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            8886          2455778777777666667666665543

>TIGR00889 2A0110 nucleoside transporter

Probab=97.00  E-value=0.0042  Score=61.25  Aligned_cols=99  Identities=18%  Similarity=0.282  Sum_probs=73.9

Q ss_pred             HHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc--cc---ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853          196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY--PR---FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK  268 (314)
Q Consensus       196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y--p~---~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~  268 (314)
                      ...++.++.+.+  ++|.|+.+.++.+++.+......+  +.   .+.++...++.|++.+..+.+...++.+..     
T Consensus       263 ~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~-----  337 (418)
T TIGR00889       263 SEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEV-----  337 (418)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence            344455667766  999999999999887765433332  21   244567889999999988888888877765     


Q ss_pred             hcccchhhhHHHHHHHHH-HHHHhhHHHHHHHHHHhh
Q psy853          269 LTDQAVDAIIVRFFGFFF-LAWQTAELWGNLISSLET  304 (314)
Q Consensus       269 ~~~~~~~~~~gr~~giF~-~~~q~s~iiGnLIs~~il  304 (314)
                           .++.+++.+|+.. ..+.++.++|+++...+.
T Consensus       338 -----p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~  369 (418)
T TIGR00889       338 -----PVHIRASAQGLFTLMCNGFGSLLGYILSGVMV  369 (418)
T ss_pred             -----CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                 4678899999996 567889999998887654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.99  E-value=0.0023  Score=65.93  Aligned_cols=143  Identities=16%  Similarity=0.156  Sum_probs=99.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhhhccc----ee--eeccceeeeehhhhhH
Q psy853          150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVP----TF--RLTVKWTLCVSMMCYL  223 (314)
Q Consensus       150 ~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~~f~P----~I--~lG~K~sLvig~l~Y~  223 (314)
                      +.++.+++.++.|.+..+++.++.-+-..  +.-+.|....+++++++.++.+.+.    .+  +++.+..+.++.+.++
T Consensus       218 ~~l~~~l~~~~~~~l~~~a~~aLlPl~a~--~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a  295 (524)
T PF05977_consen  218 PPLRSVLLRSFLFNLFASAVWALLPLFAR--DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFA  295 (524)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHhhhHHHH--HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHH
Confidence            45777888888888777777766544322  1124456677777778777776554    44  6777777777887777


Q ss_pred             HHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          224 PYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       224 iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                      +..+. .+-++.|..+++-++.|++....++...+.+-...          .++.+||.++++..+...++.+|.++...
T Consensus       296 ~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~----------P~~~~GRv~si~~~~~~g~~~lGsll~G~  365 (524)
T PF05977_consen  296 LALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSV----------PDWVRGRVFSIYQMVFFGGMPLGSLLWGF  365 (524)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65444 34456677777888888877776666555443332          57889999999999999999999888766


Q ss_pred             hh
Q psy853          303 ET  304 (314)
Q Consensus       303 il  304 (314)
                      +.
T Consensus       366 la  367 (524)
T PF05977_consen  366 LA  367 (524)
T ss_pred             HH
Confidence            53

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.98  E-value=0.0029  Score=60.64  Aligned_cols=101  Identities=15%  Similarity=0.132  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      .++....+.++.++.+.+  ++|.|+.+.++.+...+-..... -++.+.++...++.|++.+..++....+..+..   
T Consensus        49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~---  125 (394)
T PRK11652         49 MAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLY---  125 (394)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence            444444556666666666  99999999999887776554433 355667788889999998877665544443332   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                             +++.+++..+++......+.++|.++.
T Consensus       126 -------~~~~~~~~~~~~~~~~~~~~~~g~~i~  152 (394)
T PRK11652        126 -------EGTQLRHANSLLNMGILVSPLLAPLIG  152 (394)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   233455555555555555554444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=96.95  E-value=0.00077  Score=62.53  Aligned_cols=98  Identities=14%  Similarity=0.066  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      .++.+....+++++...+  ++|.|+.++++.+...+-.... +-++.+.++..-++.|++.+..++...+++.+..   
T Consensus        36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---  112 (379)
T TIGR00881        36 LSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWF---  112 (379)
T ss_pred             HHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhc---
Confidence            344455556666666666  9999999999988776554433 3356677788899999999999999988888775   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGN  297 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGn  297 (314)
                             .++.+++..+++......+.++|.
T Consensus       113 -------~~~~r~~~~~~~~~~~~~g~~~~~  136 (379)
T TIGR00881       113 -------SRSERGTWVSFWNCSHNVGGGLLP  136 (379)
T ss_pred             -------CHhhheeeEeehhccchhHHHHHH
Confidence                   244566666666666666666665

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.90  E-value=0.0022  Score=59.50  Aligned_cols=96  Identities=8%  Similarity=-0.038  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      .++.+....++.++.+.+  ++|.|+++.++.+.+.+-... -+-++++.++.+-.+.|++.+..+.+.-.++.+..   
T Consensus        44 ~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---  120 (377)
T TIGR00890        44 FTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWF---  120 (377)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHc---
Confidence            344445555555666655  999999999988766554432 34466777788888999999988766555544332   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHH
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWG  296 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiG  296 (314)
                              ++.+++..+++......+.+++
T Consensus       121 --------~~~~~~~~~~~~~~~~~g~~~~  142 (377)
T TIGR00890       121 --------PDKRGLASGIIIGGYGLGSFIL  142 (377)
T ss_pred             --------CcccHHHHHHHHHhcchhHhHH
Confidence                    2346777777777766666543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=96.89  E-value=0.0055  Score=58.74  Aligned_cols=100  Identities=12%  Similarity=0.041  Sum_probs=73.1

Q ss_pred             HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc
Q psy853          194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT  270 (314)
Q Consensus       194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~  270 (314)
                      .....++..+...+  ++|.|+.++++.+.+.+-..... -++.+.++.+-.+.|++.+..|+...+++.+..       
T Consensus        48 ~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~-------  120 (392)
T PRK10473         48 LAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTL-------  120 (392)
T ss_pred             HHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc-------
Confidence            33445555666665  99999999999887766554433 345566778889999999999998888877664       


Q ss_pred             ccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          271 DQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       271 ~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                         +++.+++..++.......+.++|.++...+
T Consensus       121 ---~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473        121 ---DDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               356678888888888877777777766543

>PRK09848 glucuronide transporter; Provisional

Probab=96.86  E-value=0.0064  Score=59.85  Aligned_cols=102  Identities=15%  Similarity=0.049  Sum_probs=67.6

Q ss_pred             hhhcccee--eeccceeeeehhhhhHHHHhhc-ccc--cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853          200 SCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYP--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV  274 (314)
Q Consensus       200 s~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~  274 (314)
                      +..+.+.+  ++|.|..+++|.+...+-.... +.+  +.+.++++.++.|+|.+..++...+.+.+.......++   -
T Consensus       280 ~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~---g  356 (448)
T PRK09848        280 SAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLT---G  356 (448)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh---C
Confidence            44445545  8999999998876554322222 222  34455667788999999998877666655542111111   1


Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          275 DAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      .+..|.++|.+....++++.+|..+...++
T Consensus       357 ~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        357 VRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            235688899999999999999998887776

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.84  E-value=0.002  Score=60.07  Aligned_cols=95  Identities=20%  Similarity=0.196  Sum_probs=69.9

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccce--------ehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFY--------TLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y--------~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      .+++++...+  ++|.|+++.++.+.+.+-..... .++..        .++.+-++.|++.+..+++...++.+..   
T Consensus        49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~---  125 (394)
T TIGR00883        49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA---  125 (394)
T ss_pred             hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC---
Confidence            4566666665  99999999999887765543322 23322        3677889999999999999888888775   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                             .++.+++..+++......+.++|+++...
T Consensus       126 -------~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  154 (394)
T TIGR00883       126 -------PPGKRGFYGSFQQVGAPVGLLLAALTVLL  154 (394)
T ss_pred             -------CcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   35567888888888888888887766543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=96.84  E-value=0.0062  Score=58.12  Aligned_cols=88  Identities=16%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHH
Q psy853          208 RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFF  286 (314)
Q Consensus       208 ~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~  286 (314)
                      ++|.|+.+.++.+...+..... +.+..+.++...++.|++.+..++...+++...+          .++.+++.++++.
T Consensus       284 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~  353 (408)
T PRK09874        284 RIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS----------SNQIAGRIFSYNQ  353 (408)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC----------CcccceeeehHHH
Confidence            8999999988877665544332 2345566677888999999998888777765443          3567889999999


Q ss_pred             HHHHhhHHHHHHHHHHhhh
Q psy853          287 LAWQTAELWGNLISSLETV  305 (314)
Q Consensus       287 ~~~q~s~iiGnLIs~~il~  305 (314)
                      .+.+.+..+|.++...+..
T Consensus       354 ~~~~~g~~~gp~~~G~l~~  372 (408)
T PRK09874        354 SFRDIGNVTGPLMGAAISA  372 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHh
Confidence            9999999999998876653

>PRK11043 putative transporter; Provisional

Probab=96.82  E-value=0.0081  Score=57.76  Aligned_cols=105  Identities=12%  Similarity=0.020  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      ..++.+....+++++...+  ++|.|+.++++.+.+.+-... .+-++.+.++.+-.+.|++.+..++...+++.+.-  
T Consensus        46 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~--  123 (401)
T PRK11043         46 SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRY--  123 (401)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--
Confidence            3444555566777777766  999999999988766543332 33456677788889999998877766555544432  


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                              .++.+++.++..+....++..+|.++...+
T Consensus       124 --------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  153 (401)
T PRK11043        124 --------PAQKANRVFATIMPLVALSPALAPLLGAWL  153 (401)
T ss_pred             --------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    234456666777766677766766665543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.79  E-value=0.0065  Score=59.62  Aligned_cols=110  Identities=11%  Similarity=0.047  Sum_probs=76.3

Q ss_pred             ChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHh
Q psy853          184 GLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLT  260 (314)
Q Consensus       184 ~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt  260 (314)
                      ..-....++.+..++++.++...+  ++|+|+.+.++.+.+.+-... -+-++.+.++.+-++.|++.+...+....++.
T Consensus        51 ~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~  130 (413)
T PRK15403         51 SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQ  130 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677777777787777666  999999999998877654333 33456777888999999998865544333333


Q ss_pred             hhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          261 QVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       261 ~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      +.-          .++.++|..+++.....++.++|.++...+
T Consensus       131 ~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l  163 (413)
T PRK15403        131 EAF----------GQTKGIKLMAIITSIVLVAPIIGPLSGAAL  163 (413)
T ss_pred             Hhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321          245567778888888888888887776544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=96.79  E-value=0.0071  Score=59.82  Aligned_cols=94  Identities=13%  Similarity=0.039  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-----ccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-----PRFYTLVPAGILVGIGAAPMWAAKATYLTQV  262 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-----p~~y~li~as~l~G~gagllW~aqg~ylt~~  262 (314)
                      .++.+...+++.++.+.+  ++|.|+.++++.+.+.+.......     .+.+.++..-++.|++.+..|+.....+.+.
T Consensus        69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~  148 (452)
T PRK11273         69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  148 (452)
T ss_pred             HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence            344455556666666666  999999999998877655443322     2344567777889999998887766665554


Q ss_pred             hhhhhhhcccchhhhHHHHHHHHHHHHHhhH
Q psy853          263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQTAE  293 (314)
Q Consensus       263 s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~  293 (314)
                      .          .++.+++..|++.....++.
T Consensus       149 ~----------~~~~r~~~~~~~~~~~~~g~  169 (452)
T PRK11273        149 W----------SQKERGGIVSVWNCAHNVGG  169 (452)
T ss_pred             C----------ChHHHHHHHHHHHHHHHhhh
Confidence            3          24557777777666555553

>PRK09952 shikimate transporter; Provisional

Probab=96.78  E-value=0.0077  Score=59.47  Aligned_cols=99  Identities=14%  Similarity=0.130  Sum_probs=70.5

Q ss_pred             HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccce--------ehhhhHHHhccCchhhhchhhhhHh
Q psy853          192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFY--------TLVPAGILVGIGAAPMWAAKATYLT  260 (314)
Q Consensus       192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y--------~li~as~l~G~gagllW~aqg~ylt  260 (314)
                      +.|....+++++.+.+  ++|.|+.+.++.+.+.+..+.. +-|+.+        .++..-.+.|++.|..|++...|+.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            4455566777777766  9999999999999888876543 445543        3677789999999999999988988


Q ss_pred             hhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          261 QVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       261 ~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                      +..          .++.|++..+.....+.++.++|..+.
T Consensus       152 e~~----------p~~~rg~~~~~~~~g~~~G~~l~~~~~  181 (438)
T PRK09952        152 ESA----------PKNKKAFYSSGVQVGYGVGLLLSTGLV  181 (438)
T ss_pred             HhC----------CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            765          233456666666655566665554433

>PRK09669 putative symporter YagG; Provisional

Probab=96.77  E-value=0.008  Score=59.20  Aligned_cols=106  Identities=8%  Similarity=0.057  Sum_probs=72.6

Q ss_pred             Hhhhcccee--eeccceeeeehhhhhHH-HHhhcccc--cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc
Q psy853          199 LSCIFVPTF--RLTVKWTLCVSMMCYLP-YIGFQFYP--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA  273 (314)
Q Consensus       199 is~~f~P~I--~lG~K~sLvig~l~Y~i-yi~s~~yp--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~  273 (314)
                      ++.++.+.+  |+|.|..+.++.++..+ .....+.+  +.+.+++..++.|++.+..+...-+.+++.......++   
T Consensus       279 i~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~---  355 (444)
T PRK09669        279 FGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRS---  355 (444)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc---
Confidence            444556655  89999999888776653 32223332  34456778889999999999888888877653111111   


Q ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCC
Q psy853          274 VDAIIVRFFGFFFLAWQTAELWGNLISSLETVLP  307 (314)
Q Consensus       274 ~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~  307 (314)
                      -++.-|.+++++..+.++++.+|.++...++-.-
T Consensus       356 G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        356 GRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             CcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1334567788888888999999999888776543

>PRK12382 putative transporter; Provisional

Probab=96.71  E-value=0.014  Score=55.89  Aligned_cols=99  Identities=12%  Similarity=0.072  Sum_probs=71.3

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA  273 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~  273 (314)
                      ..++.++.+.+  ++|.|+.++++.....+-.... +.++.+..++..++.|++.+..+......+.+..          
T Consensus       262 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------  331 (392)
T PRK12382        262 FVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRV----------  331 (392)
T ss_pred             HHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc----------
Confidence            34555666665  9999999888776554433332 3455556677888899998887776555554443          


Q ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          274 VDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       274 ~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                      .++.+++..|++......+..+|+.+...+..
T Consensus       332 ~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~  363 (392)
T PRK12382        332 PSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT  363 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36779999999999999999999988876653

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.69  E-value=0.0047  Score=59.90  Aligned_cols=97  Identities=8%  Similarity=-0.071  Sum_probs=67.2

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHHHHhh-----c-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-----Q-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK  268 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-----~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~  268 (314)
                      ..+++++.+.+  ++|.|+.++++.+..++-...     + ..+..+.++...++.|++.+...++..+++.+..     
T Consensus        65 ~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~-----  139 (417)
T PRK10489         65 MFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALV-----  139 (417)
T ss_pred             HHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-----
Confidence            34444555555  999999999987655432211     1 1345566777888999998888877766665554     


Q ss_pred             hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                           .++.+++..+++....+++.++|..+...+
T Consensus       140 -----~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l  169 (417)
T PRK10489        140 -----GRENLMQAGAITMLTVRLGSVISPALGGLL  169 (417)
T ss_pred             -----CHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence                 245678888888888888888888776554

>PRK03699 putative transporter; Provisional

Probab=96.68  E-value=0.0046  Score=59.74  Aligned_cols=100  Identities=12%  Similarity=0.044  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      ++.+..+.++.++.+.+  ++|.|+.++++.+...+-.... +.++.+.++.+-.+.|++.+..+.....++++..    
T Consensus        49 s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~----  124 (394)
T PRK03699         49 TFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVY----  124 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhc----
Confidence            34455566677777776  9999999999887766554432 3356666778889999999988887777766553    


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                            .++.+++..++....+..+.++++++.
T Consensus       125 ------~~~~r~~~~~~~~~~~~~g~~~~~~~~  151 (394)
T PRK03699        125 ------EGKQRGSRLLFTDSFFSMAGMIFPIIA  151 (394)
T ss_pred             ------ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  234456666655555555555555443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.65  E-value=0.0065  Score=61.65  Aligned_cols=93  Identities=13%  Similarity=0.048  Sum_probs=63.3

Q ss_pred             cccee--e-eccceeeeehhhhhHHHHhhcccc-c-ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhh
Q psy853          203 FVPTF--R-LTVKWTLCVSMMCYLPYIGFQFYP-R-FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI  277 (314)
Q Consensus       203 f~P~I--~-lG~K~sLvig~l~Y~iyi~s~~yp-~-~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~  277 (314)
                      +...+  + +|.|+++++|.+.+.+-....... . ...++.+=++.|+|.|.+++...+.+.+.-   ++     +++.
T Consensus        69 ~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~---p~-----~~~~  140 (489)
T PRK10207         69 IGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCY---PP-----KDPR  140 (489)
T ss_pred             hHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhc---CC-----Cchh
Confidence            34444  6 999999999999887755443332 2 223456778899999999988877776542   21     1224


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          278 IVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       278 ~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      +++.++++....+++..+|..+..++
T Consensus       141 ~~~~~~~~~~~~nig~~~g~~l~g~l  166 (489)
T PRK10207        141 LDGAFTLFYMSINIGSLISLSLAPVI  166 (489)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            45667888888888888877655443

>TIGR00896 CynX cyanate transporter

Probab=96.64  E-value=0.028  Score=53.12  Aligned_cols=107  Identities=14%  Similarity=0.116  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHhhhcccee--ee-ccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853          188 VSLSAIYAALVLSCIFVPTF--RL-TVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVG  263 (314)
Q Consensus       188 ~slailY~~~~is~~f~P~I--~l-G~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s  263 (314)
                      ...++......+++++.+.+  |+ +.|+.+.++.+..++......+ +... .....++.|++.+..+...-..+.+..
T Consensus       236 ~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~g~~~~~~~~~~~~~~  314 (355)
T TIGR00896       236 SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHG-LWAWALVLGLGQGGAFPLALTLIGLRS  314 (355)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHhhhhHhHHHHHHHHHhc
Confidence            34555566677777777766  88 4566666666555444333222 2222 222467889998888866444443222


Q ss_pred             hhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       264 ~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                               +.++..+...++...+..++..+|..+...+.
T Consensus       315 ---------~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~  346 (355)
T TIGR00896       315 ---------RQAAQAAALSAMAQSIGYLLAALGPLFVGVLH  346 (355)
T ss_pred             ---------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     12456678888888888888888887766543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.64  E-value=0.0066  Score=61.84  Aligned_cols=145  Identities=15%  Similarity=0.224  Sum_probs=104.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHhhhhcccC-CCChhhHHHHHH----HHHHHHhhhcccee--eeccc--eeeeehhh
Q psy853          150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINA-KEGLGTVSLSAI----YAALVLSCIFVPTF--RLTVK--WTLCVSMM  220 (314)
Q Consensus       150 ~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~-~~~lG~~slail----Y~~~~is~~f~P~I--~lG~K--~sLvig~l  220 (314)
                      |.++++...=+++|+.--++++...+..-... +-+.+...+.++    -.+..+++++.+.+  ++|+|  .++.++.+
T Consensus       278 ~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  278 RKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            45778888888888877788877777544321 223333333333    34455566677777  99999  88888777


Q ss_pred             hhHHHHh-hcc--------cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHh
Q psy853          221 CYLPYIG-FQF--------YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQT  291 (314)
Q Consensus       221 ~Y~iyi~-s~~--------yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~  291 (314)
                      .+.+-.. +.+        ..+.+-.++.+++.|+..|..|+..-+++++..          .++..+.|+|+|-..-..
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li----------P~g~e~efFgly~i~gk~  427 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI----------PPGREAEFFGLYAITGKA  427 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC----------CCchhhHHHHHHHHHHHH
Confidence            7733322 222        344566788999999999999999999999887          345559999999999999


Q ss_pred             hHHHHHHHHHHhh
Q psy853          292 AELWGNLISSLET  304 (314)
Q Consensus       292 s~iiGnLIs~~il  304 (314)
                      +.++|.++...+.
T Consensus       428 ss~lGPll~g~i~  440 (477)
T PF11700_consen  428 SSWLGPLLFGLIT  440 (477)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877664

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=96.63  E-value=0.0081  Score=60.38  Aligned_cols=98  Identities=15%  Similarity=0.104  Sum_probs=72.8

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHHHH-hhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYI-GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV  274 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi-~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~  274 (314)
                      +++.++...+  ++|.|+.++++.+.+.+.. .+.+-++.+.++.+-++.|+|.+.++++.-..+.+.-         .+
T Consensus        55 ~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~---------~~  125 (495)
T PRK14995         55 AGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATF---------TE  125 (495)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------CC
Confidence            3344444444  9999999999998887654 3345577888888999999999998876555443321         03


Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          275 DAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ++.+++..|++......+.++|.++...+.
T Consensus       126 ~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995        126 EKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            567899999999999999999998876654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=96.62  E-value=0.021  Score=54.90  Aligned_cols=96  Identities=16%  Similarity=0.109  Sum_probs=65.3

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA  273 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~  273 (314)
                      ..+..++.+.+  ++|.|+.++++.++.++.... .+-++.|.+++..++.|++.+..+++.-.|+.+..          
T Consensus       253 ~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------  322 (382)
T PRK11128        253 EVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP----------  322 (382)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
Confidence            33444555555  899999999888877764433 23455666788999999999999888777765543          


Q ss_pred             hhhhHHHHHHHHHHH-HHhhHHHHHHHHHHh
Q psy853          274 VDAIIVRFFGFFFLA-WQTAELWGNLISSLE  303 (314)
Q Consensus       274 ~~~~~gr~~giF~~~-~q~s~iiGnLIs~~i  303 (314)
                       ++.+++..+.+..+ ...+..+|+++...+
T Consensus       323 -~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l  352 (382)
T PRK11128        323 -GSEVIRLQALYSALAMGGSIAIMTVLSGFL  352 (382)
T ss_pred             -HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33457778877533 455556777766544

>TIGR00896 CynX cyanate transporter

Probab=96.60  E-value=0.0032  Score=59.51  Aligned_cols=101  Identities=11%  Similarity=0.097  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      ..++.+..+.++.++.+.+  ++|.|+.+.++.++..+-.+....++.+.++.+.++.|++.+..+++...++.+..   
T Consensus        40 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~---  116 (355)
T TIGR00896        40 LTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGIAIINVLLPSLIKRDF---  116 (355)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccchHHHHHhC---
Confidence            3345556666777777776  99999999999887766554445677777888899999999988876655554332   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                              ++.+++..+++......+..+|.++.
T Consensus       117 --------~~~~~~~~~~~~~~~~~g~~i~~~~~  142 (355)
T TIGR00896       117 --------PQRVGLMTGLYSMALMGGAALAAAAT  142 (355)
T ss_pred             --------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence                    23466777777666666666555443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.59  E-value=0.029  Score=54.41  Aligned_cols=98  Identities=15%  Similarity=0.089  Sum_probs=66.1

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV  274 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~  274 (314)
                      .++.++.+.+  +.+.++.+.++.++..+.... .+.++.+.++....+.|++.+...+...+++.+..          .
T Consensus       273 ~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------p  342 (417)
T PRK10489        273 ALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQT----------P  342 (417)
T ss_pred             HHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------C
Confidence            3344455555  555666777766555444332 34555555667777888887776666666665554          4


Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          275 DAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                      ++.+++.+|++..+.++++.+|..+...+.-
T Consensus       343 ~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~  373 (417)
T PRK10489        343 DEMLGRINGLWTAQNVTGDAIGAALLGGLGA  373 (417)
T ss_pred             HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence            6789999999999999999999988776543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.58  E-value=0.00062  Score=66.39  Aligned_cols=107  Identities=17%  Similarity=0.301  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-c---cceehhhhHHHhccCchhhhchhhhhHh
Q psy853          187 TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-P---RFYTLVPAGILVGIGAAPMWAAKATYLT  260 (314)
Q Consensus       187 ~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p---~~y~li~as~l~G~gagllW~aqg~ylt  260 (314)
                      ....++.+....+++++.+.+  ++|.|+++.++.+.+.+..+...+ +   +++.+.++-.+.|++.|..++....|++
T Consensus        49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~  128 (451)
T PF00083_consen   49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYIS  128 (451)
T ss_pred             HHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345667777777888888877  999999999999988777655443 4   6788889999999999999999999999


Q ss_pred             hhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          261 QVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       261 ~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      +.+          .++.|+++..++...+.+|.++|.++....
T Consensus       129 E~~----------~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen  129 EIA----------PPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             ccc----------cccccccccccccccccccccccccccccc
Confidence            997          466778887777766666766666665544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.57  E-value=0.005  Score=58.20  Aligned_cols=103  Identities=15%  Similarity=0.102  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      ++......++.++...+  ++|.|+.++++.+...+...... .++.+.++....+.|++.+..++...+++.+..    
T Consensus        33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----  108 (377)
T PRK11102         33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMF----  108 (377)
T ss_pred             HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            34444455666666665  99999999999887766655433 355667788899999999999998888887765    


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                            +++.+++..++.......+.++|.++...+
T Consensus       109 ------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  138 (377)
T PRK11102        109 ------PKEEFSRMMSFVTLVMTIAPLLAPIIGGWL  138 (377)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  356788888888888888888887765543

>TIGR00898 2A0119 cation transport protein

Probab=96.55  E-value=0.0037  Score=62.14  Aligned_cols=106  Identities=14%  Similarity=0.190  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853          187 TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG  263 (314)
Q Consensus       187 ~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s  263 (314)
                      ....++.+....++.++...+  ++|.|+.++++.+...+.... .+-++.+.++..-++.|++.+..++....++.+..
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~  209 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFL  209 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheec
Confidence            345556666677777777766  999999999998877665433 45677788889999999999999999999988775


Q ss_pred             hhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       264 ~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                                .++.+++..++....+..+.+++.+++.+
T Consensus       210 ----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  238 (505)
T TIGR00898       210 ----------PKKQRAIVGTLIQVFFSLGLVLLPLVAYF  238 (505)
T ss_pred             ----------ChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      35567888888888888888887776654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.53  E-value=0.02  Score=62.72  Aligned_cols=95  Identities=7%  Similarity=-0.013  Sum_probs=65.9

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV  274 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~  274 (314)
                      .++.++.+.+  +++.+..+.++.++.++...... .++.+.+++..++.|++.+++++...+++.+..          .
T Consensus       283 ~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------p  352 (1146)
T PRK08633        283 GIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRA----------P  352 (1146)
T ss_pred             HHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC----------C
Confidence            3444455555  77777788877776655443333 345566678889999999999988888876665          3


Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          275 DAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                      ++.+++.+|+...+.+++.++|.++..+
T Consensus       353 ~~~rg~~~~~~~~~~~lg~~~~~~~~~~  380 (1146)
T PRK08633        353 EKELGKVLAANNFLQNVGMLLFLALTTL  380 (1146)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888888888877666655543

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.52  E-value=0.0066  Score=59.06  Aligned_cols=99  Identities=14%  Similarity=0.034  Sum_probs=61.5

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD  271 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~  271 (314)
                      ....++.++.+.+  |+|.|+.++++.+.+.+..... +.++.+.++...++.|++.+.+....-.|+.+..        
T Consensus       273 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------  344 (420)
T PRK09528        273 FLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF--------  344 (420)
T ss_pred             HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence            3445666677777  9999999988888776654333 3456666777888888888887766655655442        


Q ss_pred             cchhhhHHHHHHH-HHHHHHhhHHHHHHHHHHh
Q psy853          272 QAVDAIIVRFFGF-FFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       272 ~~~~~~~gr~~gi-F~~~~q~s~iiGnLIs~~i  303 (314)
                        .++.++...+. +....+++.++|+.+...+
T Consensus       345 --~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l  375 (420)
T PRK09528        345 --DVRLSATIYLVGFQFAKQLGAVFLSTLAGNL  375 (420)
T ss_pred             --CccceeeeeeehHHHHHHHHHHHHHHHHHHH
Confidence              12223333222 3334556666666665544

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.51  E-value=0.0074  Score=58.37  Aligned_cols=102  Identities=8%  Similarity=0.024  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853          192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK  268 (314)
Q Consensus       192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~  268 (314)
                      +..+...+++++...+  |+|.|+.+.++.+...+......+ .+.+..+..-++.+++.+..+.....++.+..     
T Consensus       260 ~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~-----  334 (393)
T PRK15011        260 TAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLM-----  334 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence            3344455566777766  999998887765544433322222 23333344445555655655544444444443     


Q ss_pred             hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                            ++.+++..+++....+.+..+|++++..+.
T Consensus       335 ------p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~  364 (393)
T PRK15011        335 ------PGQAGSATTLYTNTSRVGWIIAGSLAGIVA  364 (393)
T ss_pred             ------CCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  234788899998889999999998887654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.51  E-value=0.016  Score=55.81  Aligned_cols=102  Identities=15%  Similarity=0.025  Sum_probs=61.8

Q ss_pred             HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc
Q psy853          194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT  270 (314)
Q Consensus       194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~  270 (314)
                      .....++.++.+.+  ++|.|+.++++.+++.+-... .+.++.+.+++..++.|++........-.|..+..       
T Consensus       264 ~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-------  336 (396)
T TIGR00882       264 ELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF-------  336 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence            33445555666666  999999999988877764444 34566777788888888776554332222322211       


Q ss_pred             ccchhhhHHHHHHH-HHHHHHhhHHHHHHHHHHhhh
Q psy853          271 DQAVDAIIVRFFGF-FFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       271 ~~~~~~~~gr~~gi-F~~~~q~s~iiGnLIs~~il~  305 (314)
                         +++..+...+. +....+++.++|+++...++.
T Consensus       337 ---~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~  369 (396)
T TIGR00882       337 ---DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD  369 (396)
T ss_pred             ---CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence               12222222333 446778888888877776654

>TIGR00898 2A0119 cation transport protein

Probab=96.47  E-value=0.01  Score=58.93  Aligned_cols=94  Identities=11%  Similarity=0.096  Sum_probs=60.9

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccc--eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhccc
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRF--YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQ  272 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~--y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~  272 (314)
                      .++.++.+.+  ++|.|+.++++.+.-.+..... +.+..  +..+....+.+++.+..|.....|..+..         
T Consensus       369 i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---------  439 (505)
T TIGR00898       369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY---------  439 (505)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------
Confidence            3444555555  9999999988877655444332 22332  33455566667777777776666665553         


Q ss_pred             chhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853          273 AVDAIIVRFFGFFFLAWQTAELWGNLISS  301 (314)
Q Consensus       273 ~~~~~~gr~~giF~~~~q~s~iiGnLIs~  301 (314)
                       ..+.+++..|+...+..++.++|+.+..
T Consensus       440 -p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       440 -PTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             -cHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence             2456777788888888888888876655

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.46  E-value=0.013  Score=58.30  Aligned_cols=65  Identities=15%  Similarity=0.054  Sum_probs=52.0

Q ss_pred             ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          230 FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       230 ~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      +.++.+.++...++.|++.+..+....+.+.+..          .++.+++..|++..+.++++++|..+...+.
T Consensus       329 ~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~----------~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  393 (455)
T TIGR00892       329 LAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLV----------GAQRFSSAVGLVTIVECCAVLIGPPLAGRLV  393 (455)
T ss_pred             HhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh----------hHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence            3455666778899999999999888777776654          3567899999999999999999998877554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.46  E-value=0.0026  Score=50.21  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             Hhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchh
Q psy853          199 LSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVD  275 (314)
Q Consensus       199 is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~  275 (314)
                      ++.++.+.+  ++|.|+.++++.....+..... +.++.+.++....+.|++.+..++....++.+..          .+
T Consensus        13 ~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~   82 (141)
T TIGR00880        13 IYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY----------PP   82 (141)
T ss_pred             HHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC----------Ch
Confidence            344445544  8999999988877665544333 2345566677889999999999988888877765          35


Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          276 AIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       276 ~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      +.+++..++.....+.+..+|..+...+.
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            67889999999999999999998887665

>PRK10504 putative transporter; Provisional

Probab=96.44  E-value=0.029  Score=55.18  Aligned_cols=94  Identities=14%  Similarity=0.036  Sum_probs=66.7

Q ss_pred             hcccee--eeccceeeeehhhhhHHHHhhcccc---cc-eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchh
Q psy853          202 IFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYP---RF-YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVD  275 (314)
Q Consensus       202 ~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp---~~-y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~  275 (314)
                      ++.+.+  ++|.|+.++++.++..+........   .+ +.+....++.|++.++.+.....++.+..          .+
T Consensus       315 ~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~  384 (471)
T PRK10504        315 RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDL----------PD  384 (471)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CH
Confidence            445555  8999999998888666554333221   22 22344567778888888888777765543          35


Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          276 AIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       276 ~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                      +.+++.++++....+++..+|..+...++-
T Consensus       385 ~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        385 NLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678889999999999999999988776653

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.37  E-value=0.012  Score=59.80  Aligned_cols=95  Identities=9%  Similarity=0.095  Sum_probs=61.3

Q ss_pred             hcccee--e-eccceeeeehhhhhHHHHhhc-ccc-cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhh
Q psy853          202 IFVPTF--R-LTVKWTLCVSMMCYLPYIGFQ-FYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDA  276 (314)
Q Consensus       202 ~f~P~I--~-lG~K~sLvig~l~Y~iyi~s~-~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~  276 (314)
                      .+...+  + +|.|+++++|.+.+.+-.... +.+ ..+.++.+-++.|+|.|+..+...+++.+.-   ++     +++
T Consensus        75 ~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f---~~-----~~~  146 (500)
T PRK09584         75 AIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCY---EK-----DDP  146 (500)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhc---CC-----Cch
Confidence            344555  7 699999999988777543322 222 2334556668899999999887777765542   11     122


Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          277 IIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       277 ~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      .+.+.+++++.....+.++|.++...+.
T Consensus       147 ~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584        147 RLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             hhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777888877777766543

>PRK03699 putative transporter; Provisional

Probab=96.30  E-value=0.035  Score=53.61  Aligned_cols=105  Identities=11%  Similarity=0.039  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      ++......++.++.+.+  |++.|+.++...+.-.+..... ..++.+.+.+...+.|++.+..|...-++..+..    
T Consensus       248 ~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~----  323 (394)
T PRK03699        248 SNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT----  323 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence            44445567777777777  9999998877665443322222 2334444556677888877777766554443322    


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL  306 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~  306 (314)
                             ++..++..|......+++..+|..+...+.-.
T Consensus       324 -------~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~  355 (394)
T PRK03699        324 -------KVASPKLVNFILTCGTIGTMLTFVVTSPIVAH  355 (394)
T ss_pred             -------cCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence                   11223446777777888998888887766543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.29  E-value=0.022  Score=62.81  Aligned_cols=63  Identities=10%  Similarity=-0.075  Sum_probs=50.3

Q ss_pred             ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          232 PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       232 p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      +..|.++++.++.|++.+...+...+++.+.+          .++.+||..|++..+.++++.+|.++...+.
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWA----------NPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhC----------CcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566678888999999999988777776665          4778999999999999998888888776553

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.28  E-value=0.022  Score=56.63  Aligned_cols=97  Identities=13%  Similarity=-0.010  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhh-HHHhccCchhhhchhhhhHhhhhhhh
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPA-GILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~a-s~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      ++.+....++..+...+  ++|.|+.++++.+...+..+.. +.++.+.++.. .++.|++.+..+.....++.+.-   
T Consensus        61 s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~---  137 (455)
T TIGR00892        61 SIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYF---  137 (455)
T ss_pred             HHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH---
Confidence            34444456666666655  9999999999887666544332 34555655544 47889999987765544443332   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNL  298 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnL  298 (314)
                              ++.+++..|+.......+..+|+.
T Consensus       138 --------~~~r~~a~g~~~~~~~~g~~~~~~  161 (455)
T TIGR00892       138 --------YRRRPLANGLAMAGSPVFLSTLAP  161 (455)
T ss_pred             --------HhhHHHHHHHHHhcccHHHHHHHH
Confidence                    223556666655555544444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=96.28  E-value=0.033  Score=54.18  Aligned_cols=107  Identities=13%  Similarity=0.051  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHhhhcccee------eeccceeeeehhhhhH-H-HHhhcccccceehhhhHHHhccCchhhhchhhhh
Q psy853          187 TVSLSAIYAALVLSCIFVPTF------RLTVKWTLCVSMMCYL-P-YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATY  258 (314)
Q Consensus       187 ~~slailY~~~~is~~f~P~I------~lG~K~sLvig~l~Y~-i-yi~s~~yp~~y~li~as~l~G~gagllW~aqg~y  258 (314)
                      ....+.++....++.++...+      +. .|..++++.+.+. + +....+.+..+.++.+.++.|++.+.....-.++
T Consensus       251 ~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  329 (394)
T PRK10213        251 VDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTW  329 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            333444555555555444433      43 3444444433322 2 1222233445666778888998888777776666


Q ss_pred             HhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          259 LTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       259 lt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                      +.+..           ++..++..++...+++++..+|.++...+.-
T Consensus       330 ~~~~~-----------~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~  365 (394)
T PRK10213        330 ITRSL-----------ADQAEKAGSIQVAVIQLANTCGAAIGGYALD  365 (394)
T ss_pred             HHHHC-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66553           2335566777888889999999999887654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.23  E-value=0.011  Score=65.06  Aligned_cols=105  Identities=14%  Similarity=0.037  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeee---hhhhhHH-HHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCV---SMMCYLP-YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGA  264 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvi---g~l~Y~i-yi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~  264 (314)
                      ++....+.++++++..+  ++|.|+.|.+   ..+.... ...++..++.+.++.+.++.|++.+..|++..+++.+.- 
T Consensus        59 ~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~-  137 (1140)
T PRK06814         59 AVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHL-  137 (1140)
T ss_pred             HHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhc-
Confidence            33444456677777766  9999987533   2222222 223334477888999999999999999999999887775 


Q ss_pred             hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                               .++.+++..|++....+++.++|.++..++.-
T Consensus       138 ---------~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~  169 (1140)
T PRK06814        138 ---------NKDELLGANALVEAGTFIAILLGTIIGGLATI  169 (1140)
T ss_pred             ---------CccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     35678899999999999999999988887643

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.18  E-value=0.024  Score=56.38  Aligned_cols=93  Identities=18%  Similarity=0.280  Sum_probs=71.8

Q ss_pred             hcccee--eeccceeeeehhhhhHHHHhhccc--cccee----hhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc
Q psy853          202 IFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY--PRFYT----LVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA  273 (314)
Q Consensus       202 ~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y--p~~y~----li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~  273 (314)
                      ++.+.+  |+|.|+.|.++.++|++=.....+  +++|.    ++.+-.+.|+.-+.+|++.-.|+.+.+          
T Consensus       261 ~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~----------  330 (400)
T PF03825_consen  261 FFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA----------  330 (400)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC----------
Confidence            455665  999999999999999887655433  23333    244556799999999999999998887          


Q ss_pred             hhhhHHHHHHHHHHHH-HhhHHHHHHHHHHhh
Q psy853          274 VDAIIVRFFGFFFLAW-QTAELWGNLISSLET  304 (314)
Q Consensus       274 ~~~~~gr~~giF~~~~-q~s~iiGnLIs~~il  304 (314)
                      .++.+++..+++.++. -+|..+|++++..+.
T Consensus       331 p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~  362 (400)
T PF03825_consen  331 PPELRATAQGLYSALSFGLGGAIGSLIGGWLY  362 (400)
T ss_pred             CccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4678888889888764 588899998887654

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.17  E-value=0.0095  Score=61.28  Aligned_cols=97  Identities=10%  Similarity=0.054  Sum_probs=79.2

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccc-cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD  271 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~  271 (314)
                      ..++++-+.+..+  ++|+|+.++++.+...++.+...+. ..+.+.+.=++.|++.|..| +...|+...-        
T Consensus        73 ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~Wf--------  143 (511)
T TIGR00806        73 YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLV--------  143 (511)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC--------
Confidence            3344455555555  9999999999999998888776665 45667888899999999999 8888876654        


Q ss_pred             cchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          272 QAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       272 ~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                        .++.++|.+|++-+...+|.++|.+++..
T Consensus       144 --P~kER~ratsi~~sg~~vG~~Ia~~L~ql  172 (511)
T TIGR00806       144 --PPSRYQRAAAYSRAAVLLGVFLSSVLGQL  172 (511)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              36789999999999999999999988887

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10054 putative transporter; Provisional

Probab=96.16  E-value=0.026  Score=55.01  Aligned_cols=85  Identities=6%  Similarity=0.067  Sum_probs=56.9

Q ss_pred             eeccceeeeehhhhhHHHHhhccc--ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHH
Q psy853          208 RLTVKWTLCVSMMCYLPYIGFQFY--PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFF  285 (314)
Q Consensus       208 ~lG~K~sLvig~l~Y~iyi~s~~y--p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF  285 (314)
                      +.+.|..+.++.+.+.+.......  .+.+.++++.++.|+|.+..++.+-.++.+.+          .++.++++++..
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~----------p~~~~~~~~~~~  339 (395)
T PRK10054        270 AANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIA----------PPGMKASYFSAQ  339 (395)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------CcccceehHhHH
Confidence            678888888887666665544433  23455677889999999888887777776665          345566777654


Q ss_pred             HHHHHhhHHHHHHHHHHh
Q psy853          286 FLAWQTAELWGNLISSLE  303 (314)
Q Consensus       286 ~~~~q~s~iiGnLIs~~i  303 (314)
                      . ....+..+|+.+...+
T Consensus       340 ~-~~~~G~~~Gp~~~G~l  356 (395)
T PRK10054        340 S-LGWLGAAINPLVSGVI  356 (395)
T ss_pred             H-HHHHHHHHHHHHHHHH
Confidence            3 4446667777665544

>PTZ00207 hypothetical protein; Provisional

Probab=96.01  E-value=0.026  Score=59.28  Aligned_cols=88  Identities=8%  Similarity=-0.174  Sum_probs=62.2

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHHHHhhcc-------cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-------YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK  268 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-------yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~  268 (314)
                      .++.++...+  ++|+|+.+++|.+.+.+-.....       .++.+.+++.-++.|+|.+.++++.-..+.+.-     
T Consensus        75 g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-----  149 (591)
T PTZ00207         75 GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-----  149 (591)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence            3344444444  99999999999886655443322       246677788888999999999887665554432     


Q ss_pred             hcccchhhhHHHHHHHHHHHHHhhHHHH
Q psy853          269 LTDQAVDAIIVRFFGFFFLAWQTAELWG  296 (314)
Q Consensus       269 ~~~~~~~~~~gr~~giF~~~~q~s~iiG  296 (314)
                            ++.+|+..|+......+|..+.
T Consensus       150 ------p~~RG~a~Gi~~~~~gLGsaI~  171 (591)
T PTZ00207        150 ------PSNRGAVVAIMKTFTGLGSAIL  171 (591)
T ss_pred             ------hhhhHHHHHHHHHHHHHHHHHH
Confidence                  3567899999988888888643

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=95.87  E-value=0.14  Score=49.60  Aligned_cols=98  Identities=10%  Similarity=0.060  Sum_probs=58.3

Q ss_pred             HHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhccc
Q psy853          196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQ  272 (314)
Q Consensus       196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~  272 (314)
                      ...++.++.+.+  ++|.|..++++.....+-..... .+.....+ ...+.|++.+..+........+..         
T Consensus       252 ~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~---------  321 (393)
T PRK09705        252 GQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL-WAMVCGLGLGGAFPLCLLLALDHS---------  321 (393)
T ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH-HHHHHHHhccchHHHHHHHHHhhc---------
Confidence            345555666666  88988888777655544433322 23221112 234567777666554333322222         


Q ss_pred             chhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          273 AVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       273 ~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      +.++.+++.+|....+.+++..+|..+...+
T Consensus       322 ~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l  352 (393)
T PRK09705        322 VQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL  352 (393)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1245788999999999998888888776654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=95.84  E-value=0.055  Score=54.49  Aligned_cols=62  Identities=18%  Similarity=0.131  Sum_probs=52.2

Q ss_pred             hcccee--eeccceeeeehhhhhHHHHh-hcccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853          202 IFVPTF--RLTVKWTLCVSMMCYLPYIG-FQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG  263 (314)
Q Consensus       202 ~f~P~I--~lG~K~sLvig~l~Y~iyi~-s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s  263 (314)
                      +++|.+  |+|+|+.|++++.+.++=+. +.+.++.+.+.+.-.+.|+--+++.++.=.|+++.-
T Consensus       277 ~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~f  341 (412)
T PF01306_consen  277 FFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHF  341 (412)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            577887  99999999999999888664 467888899999999999999999999999998775

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=95.80  E-value=0.021  Score=61.34  Aligned_cols=98  Identities=17%  Similarity=0.096  Sum_probs=71.5

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA  273 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~  273 (314)
                      ..++.+++..+  ++|.|++++++.++-++..+.. +.+..+.++...++.|+..+..|.+...|+++..          
T Consensus       608 ~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~----------  677 (742)
T TIGR01299       608 VLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY----------  677 (742)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------
Confidence            34444555554  9999999988877666654432 3344455666667888888889998888887764          


Q ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          274 VDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       274 ~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ..+.|++.+|+..++..++.++|+++...++
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~  708 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFV  708 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2456899999999999999999998876443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK12307 putative sialic acid transporter; Provisional

Probab=95.74  E-value=0.036  Score=53.54  Aligned_cols=103  Identities=17%  Similarity=0.106  Sum_probs=57.4

Q ss_pred             HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCch--hhhchhhhhHhhhhhhh
Q psy853          192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAA--PMWAAKATYLTQVGAVY  266 (314)
Q Consensus       192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gag--llW~aqg~ylt~~s~~y  266 (314)
                      +......++.++.+.+  ++|.|+.++++.+.-.+...... .+.........++.|++..  ..+.....++.+..   
T Consensus       274 ~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  350 (426)
T PRK12307        274 AAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYF---  350 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhC---
Confidence            3334445555566655  89999888877655444333222 1221112223333333221  11222223333332   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                             .++.+++..|+.+.+..++.++|+++...+.
T Consensus       351 -------p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        351 -------PLEVRGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             -------cHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence                   3567899999999999999999998876554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.74  E-value=0.48  Score=47.67  Aligned_cols=150  Identities=11%  Similarity=0.105  Sum_probs=76.8

Q ss_pred             CcccccchhhhhhhHHHHHHHHHHHHHHHH-HHhHHhhhhccc-CCCC----hhhHHHHHHHHHHHHhhhccce-e-eec
Q psy853          139 GKFKMSTKEKWRILKNIGSLSLAFMVQFTA-FQGTANLQSSIN-AKEG----LGTVSLSAIYAALVLSCIFVPT-F-RLT  210 (314)
Q Consensus       139 ~~~~~~~~~k~~~l~Nvi~lsi~F~l~ftA-f~~~~~LqSSin-~~~~----lG~~slailY~~~~is~~f~P~-I-~lG  210 (314)
                      ...+.+.+||++..|..+..-+=.++.|.+ |.-.|++...+. ..+.    .=|....++|   -++-|+.-+ + .+.
T Consensus       229 ~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~Y---Q~GVFISRSS~~~~r  305 (402)
T PF02487_consen  229 SSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLY---QLGVFISRSSLPFFR  305 (402)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHH---HHHHhhhhcceeeee
Confidence            344567778888777766533333333333 333334433321 1001    1122333333   345555533 3 555


Q ss_pred             cceeeeehhhhhHHHHh---h---cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHH
Q psy853          211 VKWTLCVSMMCYLPYIG---F---QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGF  284 (314)
Q Consensus       211 ~K~sLvig~l~Y~iyi~---s---~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~gi  284 (314)
                      .|+.-+++.+-....+.   .   ++.|+.|.+++-....|+-+|..++-.-.-          ..++.++++|..-.|+
T Consensus       306 ir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~----------I~~~~~~~~REFslg~  375 (402)
T PF02487_consen  306 IRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR----------ISEEVPPEDREFSLGA  375 (402)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH----------HHhcCCHHHHHHHHHH
Confidence            56655555443222221   1   345778888888888887777766443222          2222345566666666


Q ss_pred             HHHHHHhhHHHHHHHHH
Q psy853          285 FFLAWQTAELWGNLISS  301 (314)
Q Consensus       285 F~~~~q~s~iiGnLIs~  301 (314)
                      --..-..|-+++++++.
T Consensus       376 vsvsds~GI~lAgll~l  392 (402)
T PF02487_consen  376 VSVSDSLGILLAGLLGL  392 (402)
T ss_pred             HHHHhhHHHHHHHHHHH
Confidence            66666666666666654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00883 2A0106 metabolite-proton symporter

Probab=95.66  E-value=0.047  Score=50.89  Aligned_cols=101  Identities=5%  Similarity=-0.075  Sum_probs=58.3

Q ss_pred             HHHHHHhhhcccee--eeccceeeeehhhhhHHHH----hhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI----GFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi----~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      .....++.++.+.+  ++|.|+.+.++.....+..    .... ....+.++...++.|++.+..+...-.++.+..   
T Consensus       265 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---  341 (394)
T TIGR00883       265 LILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELF---  341 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhC---
Confidence            33444455555555  8999987775443322211    1111 123444566677788888888887777766654   


Q ss_pred             hhhcccchhhhHHHHHHHHHHH-HHhhHHHHHHHHHHhh
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLA-WQTAELWGNLISSLET  304 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~-~q~s~iiGnLIs~~il  304 (314)
                             .++.+++..++.+.+ ...+..+|.++...+.
T Consensus       342 -------p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~  373 (394)
T TIGR00883       342 -------PTEVRYTGASLAYNLAGAIFGGFAPYIAAALV  373 (394)
T ss_pred             -------CccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence                   245566777764433 3456667776665543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03545 putative arabinose transporter; Provisional

Probab=95.55  E-value=0.23  Score=47.63  Aligned_cols=97  Identities=10%  Similarity=0.075  Sum_probs=55.2

Q ss_pred             HHHHhhhcccee--eeccceeeeehhhhh-HHH-HhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853          196 ALVLSCIFVPTF--RLTVKWTLCVSMMCY-LPY-IGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD  271 (314)
Q Consensus       196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y-~iy-i~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~  271 (314)
                      ...++.++.+.+  ++|.|.. .++.... ... .....-++.+.+++..++.|++.+.+=.....++.+..        
T Consensus       253 ~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------  323 (390)
T PRK03545        253 AGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLA--------  323 (390)
T ss_pred             HHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhC--------
Confidence            344455555555  7776653 3333322 111 11122334455566777777765433222223332222        


Q ss_pred             cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          272 QAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       272 ~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                         ++.+++..|++..+++.++.+|.++...+.
T Consensus       324 ---~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~  353 (390)
T PRK03545        324 ---PDATDVAMALFSGIFNIGIGAGALLGNQVS  353 (390)
T ss_pred             ---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               346789999999999999999988877654

>PRK11663 regulatory protein UhpC; Provisional

Probab=95.46  E-value=0.24  Score=48.74  Aligned_cols=30  Identities=10%  Similarity=-0.168  Sum_probs=24.2

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          275 DAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ++.+++..|+...+.+++.++|..+...+.
T Consensus       368 ~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~  397 (434)
T PRK11663        368 KEAAGAATGFVGLFAYLGAALSGYPLAKVL  397 (434)
T ss_pred             HhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence            567889999999999999999887766543

>KOG4686|consensus

Probab=95.37  E-value=0.095  Score=51.31  Aligned_cols=104  Identities=11%  Similarity=0.126  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchh----hhchhhhhHh
Q psy853          187 TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAP----MWAAKATYLT  260 (314)
Q Consensus       187 ~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagl----lW~aqg~ylt  260 (314)
                      ..-++++|+..++.+-+...|  +.|.|...+.++..-.+--=+.+.-..+..+.+..++|+..++    +|......+ 
T Consensus       303 ~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~v-  381 (459)
T KOG4686|consen  303 GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLV-  381 (459)
T ss_pred             cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhC-
Confidence            345778898888887666666  9999999998877655555555666778888999999999866    676665554 


Q ss_pred             hhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          261 QVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       261 ~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                                   .|+..|...|.-+++.+++..+-.+|+.+++
T Consensus       382 -------------pE~qLGTaygf~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  382 -------------PEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             -------------CHHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence                         3556888899999999999988888887664

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=95.35  E-value=0.059  Score=52.78  Aligned_cols=103  Identities=13%  Similarity=0.097  Sum_probs=70.2

Q ss_pred             HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc---ccc--ceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853          192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF---YPR--FYTLVPAGILVGIGAAPMWAAKATYLTQVGA  264 (314)
Q Consensus       192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~---yp~--~y~li~as~l~G~gagllW~aqg~ylt~~s~  264 (314)
                      .......++.++.+.+  ++|.|+.+.++.+..++-.....   .+.  .+.++...++.|+|.+..+........+.. 
T Consensus       299 ~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~-  377 (485)
T TIGR00711       299 PVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGL-  377 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            3344455555666655  99999988888766554433322   122  334566678899999988876555433322 


Q ss_pred             hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                               .++.+++..|++..+.+++..+|..+...++
T Consensus       378 ---------~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       378 ---------PPHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             ---------CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     3577899999999999999999988777665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.33  E-value=0.045  Score=55.04  Aligned_cols=105  Identities=12%  Similarity=0.131  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc----cccceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF----YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGA  264 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~----yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~  264 (314)
                      .+.|+.+.+.++-++.+  |+|.|..+++|...|++-..-++    +-.+...+.+-.+.|.|.+.+=++...|++....
T Consensus        55 faff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~  134 (422)
T COG0738          55 FAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGK  134 (422)
T ss_pred             HHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC
Confidence            34455555555556655  99999999999999888766654    2223445667789999999999999999999983


Q ss_pred             hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                                +++..+-.++-.+++.+|.++|.++......
T Consensus       135 ----------~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         135 ----------PESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             ----------chhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                      4455566778888889999999977655443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=95.24  E-value=0.22  Score=50.99  Aligned_cols=149  Identities=14%  Similarity=0.108  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhh-----cccCCCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853          153 KNIGSLSLAFMVQFTAFQGTANLQS-----SINAKEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY  225 (314)
Q Consensus       153 ~Nvi~lsi~F~l~ftAf~~~~~LqS-----Sin~~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy  225 (314)
                      |+.+.+.+.+++.+++++=...+.-     -++..+...+..+...-....++.++.|.+  ++|.|+.+.++.+.+++=
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~  315 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG  315 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence            3556666677777877774433321     112222222233333333334445677777  999999999998877665


Q ss_pred             Hhhcc-cc--cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          226 IGFQF-YP--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       226 i~s~~-yp--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                      -+.++ .|  +.+.++.+.++.|+|.+..+.-+=+-+.+.. .|-|.  |+..+.-|-++++.-.+..+++.+|+.++..
T Consensus       316 ~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~v-Dyge~--~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         316 YLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTV-DYGEW--KTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             HHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchh-hHHHH--HhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544 34  2344566667766666665555444444433 12111  1123345666777777788888888877777


Q ss_pred             hh
Q psy853          303 ET  304 (314)
Q Consensus       303 il  304 (314)
                      +|
T Consensus       393 ~L  394 (467)
T COG2211         393 IL  394 (467)
T ss_pred             HH
Confidence            76

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=95.20  E-value=0.073  Score=53.52  Aligned_cols=98  Identities=13%  Similarity=-0.037  Sum_probs=68.4

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHHHHhh--cc--cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF--QF--YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT  270 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s--~~--yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~  270 (314)
                      ..++..+.+.+  ++|.|+.+++|.+..++-...  ..  .+..+.+++..++.|+|.+..+......+....       
T Consensus       308 ~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~-------  380 (495)
T PRK14995        308 SGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAA-------  380 (495)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------
Confidence            44455555555  999999888777655433221  11  233444567788999999988876666554443       


Q ss_pred             ccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          271 DQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       271 ~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                         .++.+++..+++...++++..+|..+...++
T Consensus       381 ---~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        381 ---PPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             ---CHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3567888999999999999999998877765

>KOG2532|consensus

Probab=95.19  E-value=0.017  Score=58.89  Aligned_cols=85  Identities=16%  Similarity=0.185  Sum_probs=67.2

Q ss_pred             eeccceeeeehhhhhHHHHhhccccc-----ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHH
Q psy853          208 RLTVKWTLCVSMMCYLPYIGFQFYPR-----FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFF  282 (314)
Q Consensus       208 ~lG~K~sLvig~l~Y~iyi~s~~yp~-----~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~  282 (314)
                      ++|.|+.+.++.+.-++  +..+.|.     .|.+++.=++.|++.|..|++.+..+.+-+          ..++++++.
T Consensus        99 k~G~r~v~~~~~~~sa~--~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~----------P~~Ers~~~  166 (466)
T KOG2532|consen   99 KFGARRVFFISGLISAL--LTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWA----------PPNERSTFI  166 (466)
T ss_pred             HcCchHHHHHHHHHHHH--HHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeEC----------CHHHHHHHH
Confidence            88888888877765542  2223322     346688899999999999999999987776          467799999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhh
Q psy853          283 GFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       283 giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ++..+..|+|.+++..++.++-
T Consensus       167 ail~~g~q~g~v~~mp~sg~lc  188 (466)
T KOG2532|consen  167 AILTAGSQLGTIITMPVSGLLC  188 (466)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHh
Confidence            9999999999999998777654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.14  E-value=0.67  Score=46.86  Aligned_cols=153  Identities=10%  Similarity=0.111  Sum_probs=81.3

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHhHHhh-hhcccCC-CChhh-HHHHHHHHHHHHhhhcccee-----eeccc--eee
Q psy853          146 KEKWRILKNIGSLSLAFMVQFTAFQGTANL-QSSINAK-EGLGT-VSLSAIYAALVLSCIFVPTF-----RLTVK--WTL  215 (314)
Q Consensus       146 ~~k~~~l~Nvi~lsi~F~l~ftAf~~~~~L-qSSin~~-~~lG~-~slailY~~~~is~~f~P~I-----~lG~K--~sL  215 (314)
                      ...+.++|.+..+.++.+++|..-....-- .+.+... .+.+. .-..+++.+|.++=+++-.+     +...|  |.+
T Consensus       262 ~~~~~v~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~~p~~~~~~l~  341 (437)
T TIGR00939       262 TSVWVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFMWPDEDSRWLP  341 (437)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeEeeCCCccchH
Confidence            445667888888888766666543322111 1112111 12333 35556677777777765443     33444  544


Q ss_pred             eehhh---hhHHHHhhcccc---------cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHH
Q psy853          216 CVSMM---CYLPYIGFQFYP---------RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFG  283 (314)
Q Consensus       216 vig~l---~Y~iyi~s~~yp---------~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~g  283 (314)
                      +++.+   .+++|++++..|         +.|..++-.++.|+..|-+-+..=.|--       +..+.++++..|...+
T Consensus       342 i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p-------~~v~~~e~e~aG~~~~  414 (437)
T TIGR00939       342 ILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAP-------RQVDPHEREVAGALMV  414 (437)
T ss_pred             HHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcC-------CCCCHHHHHHHHHHHH
Confidence            43332   677888887653         4455566678888777755433322211       1112112233333333


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhCCC
Q psy853          284 FFFLAWQTAELWGNLISSLETVLPD  308 (314)
Q Consensus       284 iF~~~~q~s~iiGnLIs~~il~~~~  308 (314)
                      +   +..+|...|.++++++...-|
T Consensus       415 ~---~l~~Gl~~Gs~l~~~~~~~l~  436 (437)
T TIGR00939       415 I---FLLVGLALGAVLSFLFVAILD  436 (437)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHcc
Confidence            3   346777888888887765443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=95.11  E-value=0.14  Score=50.61  Aligned_cols=31  Identities=13%  Similarity=-0.137  Sum_probs=21.5

Q ss_pred             hhhhHHHHHHHHHHHHHhhHH-HHHHHHHHhh
Q psy853          274 VDAIIVRFFGFFFLAWQTAEL-WGNLISSLET  304 (314)
Q Consensus       274 ~~~~~gr~~giF~~~~q~s~i-iGnLIs~~il  304 (314)
                      .++.+++.+|++..+.+.+.. +|+++...+.
T Consensus       377 p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~  408 (452)
T PRK11273        377 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  408 (452)
T ss_pred             ChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            356789999999887777654 4666655443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=95.10  E-value=0.035  Score=54.04  Aligned_cols=108  Identities=14%  Similarity=0.062  Sum_probs=72.3

Q ss_pred             hhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhh
Q psy853          185 LGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQ  261 (314)
Q Consensus       185 lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~  261 (314)
                      .|.. .+..+..++++.+....+  |+|.|+.+..+.+.+..-...... ++++.++.+=++.|+|.+..+++. .++.+
T Consensus        28 ~g~~-~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~-~~~~~  105 (368)
T TIGR00903        28 LGLL-AITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAF-APAAS  105 (368)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHH-HHHHH
Confidence            3443 445555667777777766  999887765554444333222232 567788899999999998755333 33333


Q ss_pred             hhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          262 VGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       262 ~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ..          .++.+++..+++.....++.++|.++...+.
T Consensus       106 ~~----------~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~  138 (368)
T TIGR00903       106 QI----------REERRDLVISLLSFAMYLGIIFALAAGLKIY  138 (368)
T ss_pred             Hc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32          3567999999999999999998887776654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11462 putative transporter; Provisional

Probab=95.07  E-value=0.19  Score=50.31  Aligned_cols=107  Identities=7%  Similarity=0.002  Sum_probs=60.9

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHH-HHhhcccccc--eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLP-YIGFQFYPRF--YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD  271 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~i-yi~s~~yp~~--y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~  271 (314)
                      ..++.++.|.+  |+|.|..++.+.+...+ .+...+.|..  +.+++..++.|++.+.....+-+.+.+... |.|.  
T Consensus       276 ~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d-~~e~--  352 (460)
T PRK11462        276 NLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVD-YGEW--  352 (460)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhHH--
Confidence            34455667776  88888776644433222 2222233332  223445566677776666555555555542 3221  


Q ss_pred             cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853          272 QAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL  306 (314)
Q Consensus       272 ~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~  306 (314)
                      |..++.-|-+++.+.....+++.+|+.+...+|-.
T Consensus       353 ~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        353 CNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11233445556777778889999999988887744

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=95.07  E-value=0.21  Score=49.63  Aligned_cols=142  Identities=9%  Similarity=-0.045  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhcc-cCCCCh----hhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSSI-NAKEGL----GTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI  226 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSSi-n~~~~l----G~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi  226 (314)
                      +++.+.+..++.+.++.+........ .+.-|+    .....++.+....++.++.+.+  ++|.|..++++......-.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~  338 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF  338 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46677777777776666554433321 111111    1123344455566777777777  8998887665433222111


Q ss_pred             --hhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHh-hHHHHHHHHHH
Q psy853          227 --GFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQT-AELWGNLISSL  302 (314)
Q Consensus       227 --~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~-s~iiGnLIs~~  302 (314)
                        ..... .+.+.++..-.+.|+...-.....+.+..+..          .++.+++..|+.-.+.++ +..++..+...
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~----------p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~  408 (467)
T PRK09556        339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFV----------PKKAIGVANGIKGTFAYLFGDSFAKVGLGM  408 (467)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc----------chhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence              11111 22223334444455322111111122222222          356788888888777675 55666666665


Q ss_pred             hhh
Q psy853          303 ETV  305 (314)
Q Consensus       303 il~  305 (314)
                      +.-
T Consensus       409 i~~  411 (467)
T PRK09556        409 IAD  411 (467)
T ss_pred             Hhc
Confidence            544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=95.00  E-value=0.022  Score=54.43  Aligned_cols=107  Identities=7%  Similarity=-0.158  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc---c---cc-----ceehhhhHHHhccCchhhhc-
Q psy853          188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF---Y---PR-----FYTLVPAGILVGIGAAPMWA-  253 (314)
Q Consensus       188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~---y---p~-----~y~li~as~l~G~gagllW~-  253 (314)
                      ...++......++.++.+.+  ++|.|+.++++.+..++......   +   +.     .+..+....+.+.+.+..|. 
T Consensus       323 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (481)
T TIGR00879       323 LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGP  402 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccC
Confidence            33444455566677777766  99999988877554443322221   1   10     12222223333333333332 


Q ss_pred             hhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          254 AKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       254 aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ....++.+..          .++.+++..|+.....+++.++|+++...+.
T Consensus       403 ~~~~~~~~~~----------p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       403 VPWVIVSEIF----------PLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             eehhhhhccC----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333334443          3556888999999999999988887766554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00897 2A0118 polyol permease family

Probab=94.94  E-value=0.19  Score=48.68  Aligned_cols=98  Identities=12%  Similarity=-0.006  Sum_probs=57.2

Q ss_pred             HHHHHhhhcccee--eeccceeee-ehhhhhHHHHhh-----ccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLC-VSMMCYLPYIGF-----QFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLv-ig~l~Y~iyi~s-----~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      ....+++++...+  |+|.|+.+. ++.++..+....     ... ...+.+++..++.|++.+...+ ....+.+.   
T Consensus       268 ~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~---  343 (402)
T TIGR00897       268 FTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL---  343 (402)
T ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh---
Confidence            3445555665555  899887653 232222221111     111 2344556777788877765432 22222222   


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                              .++.+++..|+.....+++..+|..+...+.
T Consensus       344 --------~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~  374 (402)
T TIGR00897       344 --------APKHKGAAMSVLNLSAGLSAFLAPAIAVLFI  374 (402)
T ss_pred             --------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    1346899999999999999999998876554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR01272 gluP glucose/galactose transporter

Probab=94.93  E-value=0.51  Score=44.86  Aligned_cols=105  Identities=8%  Similarity=-0.011  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhc-ccC------CCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHH
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSS-INA------KEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP  224 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSS-in~------~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i  224 (314)
                      .++...+++++..++-.+..+.... +.+      .+.......+...+.++++.++...+  |+|.|+.+.++.+.-++
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~  220 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL  220 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            4454445555544455554443322 111      11223344666667778888888877  99998888777665554


Q ss_pred             HHhhcccccceehhhhHHHhccCchhhhchhhhh
Q psy853          225 YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATY  258 (314)
Q Consensus       225 yi~s~~yp~~y~li~as~l~G~gagllW~aqg~y  258 (314)
                      ...............+-++.|++.+++|...-+.
T Consensus       221 ~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~  254 (310)
T TIGR01272       221 LSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSL  254 (310)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433222222222345568899999999875444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=94.84  E-value=0.045  Score=55.58  Aligned_cols=69  Identities=17%  Similarity=0.299  Sum_probs=56.2

Q ss_pred             ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCCC
Q psy853          234 FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPEP  312 (314)
Q Consensus       234 ~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~~~~  312 (314)
                      .|.+++.-++.|+|.+++.+.--.++++.+          .++.++...|+++...+.|..+|+.++...-..++..||
T Consensus       379 ~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~a----------P~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~  447 (489)
T PRK10207        379 PWFIVLVYLFQSLGELFISALGLAMIAALV----------PQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDP  447 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            455778999999999999999888877776          467899999999999999999999888766444555444

>TIGR00788 fbt folate/biopterin transporter

Probab=94.81  E-value=0.019  Score=57.81  Aligned_cols=114  Identities=10%  Similarity=0.017  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHhhhccce----e--eeccceeeeehhhhhHHHHhh------cc-----cccceehhhhHHHhccCchh
Q psy853          188 VSLSAIYAALVLSCIFVPT----F--RLTVKWTLCVSMMCYLPYIGF------QF-----YPRFYTLVPAGILVGIGAAP  250 (314)
Q Consensus       188 ~slailY~~~~is~~f~P~----I--~lG~K~sLvig~l~Y~iyi~s------~~-----yp~~y~li~as~l~G~gagl  250 (314)
                      .-..++|...+++.+++..    +  +++.|+.++++.+.+++-...      .+     .|..+.++...++.+++.++
T Consensus       288 ~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~  367 (468)
T TIGR00788       288 SFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQL  367 (468)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHH
Confidence            3344444444444443332    2  799999999999888773322      22     15556778888999999999


Q ss_pred             hhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCC
Q psy853          251 MWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPE  311 (314)
Q Consensus       251 lW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~~~  311 (314)
                      .+++.-.++.+.+          .++..+..++++.++.+++..+|+.++..+....+++.
T Consensus       368 ~~~~~~~~~~~~~----------p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~  418 (468)
T TIGR00788       368 KFMPFLVLLARLC----------PSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITC  418 (468)
T ss_pred             HHccHHHHHHHhC----------CCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            9999999988887          46778899999999999999999999988887776553

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=94.78  E-value=0.2  Score=47.99  Aligned_cols=100  Identities=12%  Similarity=0.151  Sum_probs=61.6

Q ss_pred             HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853          192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL  269 (314)
Q Consensus       192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~  269 (314)
                      +......++.++.+.+  ++|.|+.+.++.+.+.+..+..+ +. +..+.+.++.|++...+++..-+++.+..      
T Consensus       243 ~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~------  314 (381)
T PRK03633        243 LLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ-AAMAPALFILGAAGFTLYPVAMAWACEKV------  314 (381)
T ss_pred             HHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh-HHHHHHHHHHHHHHHhHHHHHHHHHHccC------
Confidence            3334445555666656  99999988887777666444333 21 22344566677766655555444444332      


Q ss_pred             cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                          .++..+...+.+...++++..+|..++..+
T Consensus       315 ----~~~~~~~~~~~~~~~~~lG~~igp~~~G~l  344 (381)
T PRK03633        315 ----EHHELVAMNQALLLSYTVGSLLGPSFTAML  344 (381)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                234455667777778889999999887765

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=94.61  E-value=0.051  Score=54.91  Aligned_cols=143  Identities=20%  Similarity=0.237  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhhhhcccC-CCChhhHHH----HHHHHHHHHhhhcccee--eeccceeeeehhhhhHH
Q psy853          152 LKNIGSLSLAFMVQFTAFQGTANLQSSINA-KEGLGTVSL----SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP  224 (314)
Q Consensus       152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~-~~~lG~~sl----ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i  224 (314)
                      .+|+.+-=++-|+.--.-++...+...... .-|++..-+    .++-.+-+++|++.|.+  |+|.|.++.++.+.|.+
T Consensus       251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~  330 (438)
T COG2270         251 RKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI  330 (438)
T ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence            347777666767666667777776655432 223333322    22334567788888988  99999888888776644


Q ss_pred             HHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          225 YIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       225 yi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      -..-.+ -....-....+.+.|+..|+.|+..-+|+.+..          .++.-++|+|++-..-..+.+.|......+
T Consensus       331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lv----------p~~k~~~fFglyaltgra~S~~gp~lv~v~  400 (438)
T COG2270         331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLV----------PKGKEGRFFGLYALTGRAASFLGPFLVAVI  400 (438)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhC----------CCccccceeehhhhhhhHHHHHHHHHHHHH
Confidence            333222 222344567889999999999999999999987          345567899999888888888888766554


Q ss_pred             h
Q psy853          304 T  304 (314)
Q Consensus       304 l  304 (314)
                      .
T Consensus       401 t  401 (438)
T COG2270         401 T  401 (438)
T ss_pred             H
Confidence            4

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=94.55  E-value=0.23  Score=49.84  Aligned_cols=86  Identities=6%  Similarity=-0.082  Sum_probs=45.8

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhh---ccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF---QFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK  268 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s---~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~  268 (314)
                      ....+++++.+.+  ++|.|+.++++.+...+....   ... .....++.+-++.|++.+..+.....++.++.     
T Consensus       297 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~-----  371 (490)
T PRK10642        297 IGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMF-----  371 (490)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence            3344445555555  999999988877643321111   111 12233455556667666666655556655443     


Q ss_pred             hcccchhhhHHHHHHHHHHHHH
Q psy853          269 LTDQAVDAIIVRFFGFFFLAWQ  290 (314)
Q Consensus       269 ~~~~~~~~~~gr~~giF~~~~q  290 (314)
                           ..+.+++..|+.+.+..
T Consensus       372 -----p~~~Rg~~~g~~~~~~~  388 (490)
T PRK10642        372 -----PTHIRYSALAAAFNISV  388 (490)
T ss_pred             -----CCccchHHHHHHHHHHH
Confidence                 24456665565444333

>PRK11010 ampG muropeptide transporter; Validated

Probab=94.39  E-value=0.23  Score=50.20  Aligned_cols=95  Identities=14%  Similarity=0.026  Sum_probs=65.9

Q ss_pred             Hhhh-cccee-ee-----cccee-eeehhhhhHHHH--hhcccc--cceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          199 LSCI-FVPTF-RL-----TVKWT-LCVSMMCYLPYI--GFQFYP--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       199 is~~-f~P~I-~l-----G~K~s-Lvig~l~Y~iyi--~s~~yp--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      ++.+ ++|.. ++     |.|.. +.++.++..+..  .++.-|  +.+.+++..++.|++.+...++..++.++..   
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~---  136 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVL---  136 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            3444 55656 77     88875 667777665443  334333  4456677888889989888888888887775   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                             .++.+++..++....+.++.++|+.+...+
T Consensus       137 -------~~~~rg~~~~i~~~g~~lG~llg~~l~~~l  166 (491)
T PRK11010        137 -------PAEERGAGAAISVLGYRLAMLVSGGLALWL  166 (491)
T ss_pred             -------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   355688888888888888888887665544

>PRK09528 lacY galactoside permease; Reviewed

Probab=94.38  E-value=0.08  Score=51.49  Aligned_cols=71  Identities=20%  Similarity=0.165  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHHHHHHHHHHHHhh----hcccee--eeccceeeeehhhhhHH
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVSLSAIYAALVLSC----IFVPTF--RLTVKWTLCVSMMCYLP  224 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~slailY~~~~is~----~f~P~I--~lG~K~sLvig~l~Y~i  224 (314)
                      ++..+.+.+++.+.++.....+..- +.++-|+.....+++...+.++.    .+...+  ++|.|+.++++..+.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~   88 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV   88 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            5566666666666665443333322 11112333343444444444444    444444  99999999886665543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.36  E-value=0.088  Score=54.07  Aligned_cols=98  Identities=8%  Similarity=-0.002  Sum_probs=56.8

Q ss_pred             HHhhhcccee--ee-ccceeeeehhhhhHHHHhhccccc--ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhccc
Q psy853          198 VLSCIFVPTF--RL-TVKWTLCVSMMCYLPYIGFQFYPR--FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQ  272 (314)
Q Consensus       198 ~is~~f~P~I--~l-G~K~sLvig~l~Y~iyi~s~~yp~--~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~  272 (314)
                      .++.++...+  ++ |.|+++++|.+...+-......+.  ...++.+-++.++|.|.+.+...+++.+.   |++    
T Consensus        59 ~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~el---fp~----  131 (493)
T PRK15462         59 YVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGEL---YEP----  131 (493)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHH---CCC----
Confidence            3344444555  66 999999999887665432221211  12234444555677777777666666554   321    


Q ss_pred             chhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          273 AVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       273 ~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                       +|+.|.+.+++++...+++..+|.++...+
T Consensus       132 -~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L  161 (493)
T PRK15462        132 -TDPRRDGGFSLMYAAGNVGSIIAPIACGYA  161 (493)
T ss_pred             -CCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence             223455667777777777777666665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=93.98  E-value=0.36  Score=46.48  Aligned_cols=97  Identities=10%  Similarity=-0.037  Sum_probs=62.1

Q ss_pred             HHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-----ccc-cceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-----FYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-----~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      ...++.++.+.+  +++.|+.+.++.+...+-....     ..+ .++.++.+.++.|+|.+..++....+....     
T Consensus       263 ~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-----  337 (406)
T PRK15402        263 ALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-----  337 (406)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-----
Confidence            344555555655  8899888887765443222211     111 233456778888998888876554433221     


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                            .++.+++..++.......++.+|..+...+
T Consensus       338 ------~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        338 ------SDVSKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             ------ccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  246788999999888889988888777654

>KOG1479|consensus

Probab=93.96  E-value=0.3  Score=49.22  Aligned_cols=148  Identities=14%  Similarity=0.172  Sum_probs=83.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhHHh-hhhcccCCCCh-hhHHHHHHHHHHHHhhhccce----e-eeccceeeeehh
Q psy853          147 EKWRILKNIGSLSLAFMVQFTAFQGTAN-LQSSINAKEGL-GTVSLSAIYAALVLSCIFVPT----F-RLTVKWTLCVSM  219 (314)
Q Consensus       147 ~k~~~l~Nvi~lsi~F~l~ftAf~~~~~-LqSSin~~~~l-G~~slailY~~~~is~~f~P~----I-~lG~K~sLvig~  219 (314)
                      .||..+++.....++.++.|.-..+..- +.+-....+.. ..+..-+....+-++-+++-+    . .-++|+..+...
T Consensus       240 ~~~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~  319 (406)
T KOG1479|consen  240 SLWDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVL  319 (406)
T ss_pred             hHHHHHHHHHHHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHH
Confidence            7888888888888776666654332211 11112212222 345555555546666666522    2 444566655554


Q ss_pred             h---hhHHHHhhcc------cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchh-hhHHHHHHHHHHHH
Q psy853          220 M---CYLPYIGFQF------YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVD-AIIVRFFGFFFLAW  289 (314)
Q Consensus       220 l---~Y~iyi~s~~------yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~-~~~gr~~giF~~~~  289 (314)
                      +   .++.|.++++      +.+.+..+.-..+.|+.-|        |++.+.--|+.+..++++ +..|-...+|   .
T Consensus       320 lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG--------Yltsl~m~~aPk~v~~~e~e~aG~~m~~f---l  388 (406)
T KOG1479|consen  320 LRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG--------YLTSLIMMYAPKQVKPSEKEAAGNLMVFF---L  388 (406)
T ss_pred             HHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc--------hHhhheehhcCCCCChHHHHHHHHHHHHH---H
Confidence            3   6677888887      3334444555666666544        666666555555443333 3444444444   4


Q ss_pred             HhhHHHHHHHHHHhhh
Q psy853          290 QTAELWGNLISSLETV  305 (314)
Q Consensus       290 q~s~iiGnLIs~~il~  305 (314)
                      ..|...|.++++..+.
T Consensus       389 ~~Gl~~G~~~s~l~~~  404 (406)
T KOG1479|consen  389 VGGLALGSLLSWVFVI  404 (406)
T ss_pred             HHHHHHhhHHHHHHHH
Confidence            7788889999887654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=93.93  E-value=0.49  Score=45.39  Aligned_cols=98  Identities=12%  Similarity=-0.060  Sum_probs=56.6

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHH-HHh----hcc--cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLP-YIG----FQF--YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK  268 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~i-yi~----s~~--yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~  268 (314)
                      .++.++.+.+  |+|.|..++++.+.... ...    ...  .+..+.++...++.|++.+...++.-.++.+...    
T Consensus       258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----  333 (390)
T TIGR02718       258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAG----  333 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence            3445566655  99999888876654311 111    111  1122222333344445555554444444443321    


Q ss_pred             hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                           +++..++.++...++.+++.++|+.++..+.
T Consensus       334 -----~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~  364 (390)
T TIGR02718       334 -----DGDQAGTDVTAVQSTRDLGELIASSIAGYLT  364 (390)
T ss_pred             -----cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 2367788899999999999999999887664

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=93.91  E-value=0.64  Score=46.88  Aligned_cols=61  Identities=15%  Similarity=0.321  Sum_probs=52.6

Q ss_pred             cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          233 RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       233 ~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      +.|.+++.-++.|+|..+..+..-+++++.+          .++.+|++.|+++.....+..+|+.++...
T Consensus       380 s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~a----------P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~  440 (475)
T TIGR00924       380 SPWFMVLIYLFQTLGELMISPLGLSWWTKIA----------PQRLMGQMLGMWFLAQAMGSLLGGYLATFG  440 (475)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566889999999999999999999988887          578899999999999999888888777643

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=93.84  E-value=0.16  Score=50.96  Aligned_cols=137  Identities=20%  Similarity=0.220  Sum_probs=84.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCC--hhhHHH-HHHHHH-HHHhhhcccee--eeccceeeeehhhh
Q psy853          148 KWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEG--LGTVSL-SAIYAA-LVLSCIFVPTF--RLTVKWTLCVSMMC  221 (314)
Q Consensus       148 k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~--lG~~sl-ailY~~-~~is~~f~P~I--~lG~K~sLvig~l~  221 (314)
                      +.+...-++.+.++-|..=+.-.-...+-..+.++=+  .+...+ ...|+. .++++.+...+  ++..|..|....  
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l--   85 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL--   85 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH--
Confidence            3345677888888766554444433344333322111  222222 223333 34444433333  899999888754  


Q ss_pred             hHHHHhhc----ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy853          222 YLPYIGFQ----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGN  297 (314)
Q Consensus       222 Y~iyi~s~----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGn  297 (314)
                       .+|+.+|    +-|+++.++.+=++.|++.|.+|.-...+..+..          .++.++|..++-..-...+.++|-
T Consensus        86 -~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv----------pp~~~~~Aiaiv~~G~tlA~v~Gv  154 (394)
T COG2814          86 -ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLV----------PPGKRGRALALVFTGLTLATVLGV  154 (394)
T ss_pred             -HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CccchhhHHHHHHHHHHHHHHHhc
Confidence             5566555    4688999999999999999999999999888876          345566666665555555555543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=93.80  E-value=0.053  Score=53.17  Aligned_cols=103  Identities=9%  Similarity=-0.051  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc--c-cccc--eehhhhHHHhccCchhhhch-hhhhH
Q psy853          188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ--F-YPRF--YTLVPAGILVGIGAAPMWAA-KATYL  259 (314)
Q Consensus       188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~--~-yp~~--y~li~as~l~G~gagllW~a-qg~yl  259 (314)
                      ...........+++++...+  ++|.|+.++++.++.++-....  . +...  ...+.+-++.+++.+..|.. ...++
T Consensus       310 ~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (479)
T PRK10077        310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLL  389 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHh
Confidence            34444555566777777766  9999999988887655533221  1 1111  11222333334444444432 23444


Q ss_pred             hhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          260 TQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       260 t~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                      .+..          ..+.+++..|+..++..++.++|..+.
T Consensus       390 ~e~~----------p~~~r~~~~g~~~~~~~~g~~~~~~~~  420 (479)
T PRK10077        390 SEIF----------PNAIRGKALAIAVAAQWIANYFVSWTF  420 (479)
T ss_pred             HhhC----------ChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4443          246688888888888888887775443

>KOG1330|consensus

Probab=93.75  E-value=0.075  Score=54.35  Aligned_cols=139  Identities=17%  Similarity=0.243  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhhhhcccCC-----CChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHH
Q psy853          152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAK-----EGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP  224 (314)
Q Consensus       152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~-----~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i  224 (314)
                      .+.++++.+.-++.+.==.++.++...+...     ...|..+...+ .++++++-+....  +.-+|+.|.+|.....+
T Consensus        32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~-v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFI-VVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHH-HHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            4566777777777777666655554443222     23444443222 2233333333333  88899999999987765


Q ss_pred             HHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853          225 YIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS  301 (314)
Q Consensus       225 yi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~  301 (314)
                      =+.+ -+-..+|.+.+.=.+.|+|.+..-......+....          +++.|++-+++|+..--.|..+|-+++.
T Consensus       111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f----------~~~~Rs~~~~ify~~ipvGsglG~vvgs  178 (493)
T KOG1330|consen  111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF----------PDDKRSRVLGIFYFAIPVGSGLGYVVGS  178 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC----------cchhhhHHHHHhhhhcccccceeEEeee
Confidence            5433 33355778889999999999999998888888876          5788999999998877777666655443

>KOG3764|consensus

Probab=93.74  E-value=0.041  Score=55.51  Aligned_cols=104  Identities=19%  Similarity=0.241  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHHHHHhhhcccee------eeccceeeeehhhhh----HHHHhhcccccceehhhhHHHhccCchhhhchh
Q psy853          186 GTVSLSAIYAALVLSCIFVPTF------RLTVKWTLCVSMMCY----LPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAK  255 (314)
Q Consensus       186 G~~slailY~~~~is~~f~P~I------~lG~K~sLvig~l~Y----~iyi~s~~yp~~y~li~as~l~G~gagllW~aq  255 (314)
                      -+....+++++.++..+++.++      ++|.|.-|++|.+.-    ++|..++.||   .++++=++.|+|.+..|++-
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~---~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP---MLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH---HHHHHHHHhhhhHHHHHhhh
Confidence            3567778888888887755433      999999999987643    3444444454   67899999999999999998


Q ss_pred             hhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853          256 ATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS  301 (314)
Q Consensus       256 g~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~  301 (314)
                      -+.+.+   +|+      +|+.|++..|+-.++..+|.++|.-+..
T Consensus       181 lamlAd---~f~------~d~er~~vmGialgfislG~lvgPpfGG  217 (464)
T KOG3764|consen  181 LAMLAD---VFP------EDNERGSVMGIALGFISLGVLVGPPFGG  217 (464)
T ss_pred             HHHHHH---Hcc------cchhhhHHHHHHHHHHhccceecCCccc
Confidence            777643   343      5677899999999999999888765443

>TIGR00899 2A0120 sugar efflux transporter

Probab=93.64  E-value=0.33  Score=45.45  Aligned_cols=87  Identities=11%  Similarity=0.030  Sum_probs=47.1

Q ss_pred             eeccceeeee-hhhhhHHH-HhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHH
Q psy853          208 RLTVKWTLCV-SMMCYLPY-IGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFF  285 (314)
Q Consensus       208 ~lG~K~sLvi-g~l~Y~iy-i~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF  285 (314)
                      ++|.|+.+++ +.+...+. .+..+-++++.++....+.|.+.+..++....+..+...        ++++.+..+.++.
T Consensus        59 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~  130 (375)
T TIGR00899        59 YQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHAD--------RTGREAVMFSSVM  130 (375)
T ss_pred             ccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh--------hcchhhHHHHHHH
Confidence            8999887655 44443333 333344566666677777777766666554444433321        0111222335555


Q ss_pred             HHHHHhhHHHHHHHHHH
Q psy853          286 FLAWQTAELWGNLISSL  302 (314)
Q Consensus       286 ~~~~q~s~iiGnLIs~~  302 (314)
                      ......+.++|..+...
T Consensus       131 ~~~~~~g~~ig~~~~~~  147 (375)
T TIGR00899       131 RAQISLAWVIGPPLAFW  147 (375)
T ss_pred             HHHHhHHHHHhhhHHHH
Confidence            55556666666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG0252|consensus

Probab=93.61  E-value=0.046  Score=56.06  Aligned_cols=152  Identities=17%  Similarity=0.207  Sum_probs=100.1

Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHHh-HHhhhhcc----c--C---CCChhhHHHHHHHHHHHHhhhcccee----
Q psy853          142 KMSTKEKWRILKNIGSLSLAFMVQFTAFQG-TANLQSSI----N--A---KEGLGTVSLSAIYAALVLSCIFVPTF----  207 (314)
Q Consensus       142 ~~~~~~k~~~l~Nvi~lsi~F~l~ftAf~~-~~~LqSSi----n--~---~~~lG~~slailY~~~~is~~f~P~I----  207 (314)
                      +.....+||.++++++-|++||.  =+|+- ..++.+.+    +  .   .+++-.-..+..+++-.+++++.-.+    
T Consensus        30 ~~~~g~qw~~fk~i~iAG~Gfft--DsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~l  107 (538)
T KOG0252|consen   30 RTSEGLQWKHFKAIIIAGMGFFT--DSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWL  107 (538)
T ss_pred             ccccchhHHHHHHHHHhhhhhcc--cchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556678899999999999985  23321 12222221    1  1   12344556677777777777666544    


Q ss_pred             --eeccceeeeehhhhhHHHH-hhccc---cc----ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhh
Q psy853          208 --RLTVKWTLCVSMMCYLPYI-GFQFY---PR----FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI  277 (314)
Q Consensus       208 --~lG~K~sLvig~l~Y~iyi-~s~~y---p~----~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~  277 (314)
                        ++|.|...-...+.-.+-. ++.+.   +.    .+.+..-=.++|+|.|-=++.-.++.++.|          .+.+
T Consensus       108 gD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~a----------n~~~  177 (538)
T KOG0252|consen  108 GDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESA----------NKKT  177 (538)
T ss_pred             HhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhh----------hhcc
Confidence              8999987655554333333 12221   11    244556668899999988888888877777          4678


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          278 IVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       278 ~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                      +|.+.+..+++.-.+...|++++.+++.
T Consensus       178 RGa~iaavFa~Qg~GilaG~ivt~Iv~~  205 (538)
T KOG0252|consen  178 RGAFIAAVFAMQGFGILAGGIVALIVSA  205 (538)
T ss_pred             ccceeEEEEEecchhHhhccHHHHHHHH
Confidence            8999999999999999999988876653

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=93.41  E-value=0.26  Score=50.10  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=53.7

Q ss_pred             ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCC
Q psy853          234 FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPE  311 (314)
Q Consensus       234 ~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~~~  311 (314)
                      .+.++++.++.|+|+.++.+.--.++++.+          .++.+|+..|+|+....++..+|+.+....-+.+++.+
T Consensus       382 ~~~~~~~~~l~~~ge~~~~p~g~s~~~~~a----------P~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~  449 (500)
T PRK09584        382 VNWLIASYGLQSIGELMISGLGLAMVAQLV----------PQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTD  449 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            346789999999999999999999988887          57899999998887777788777777764443344433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=93.35  E-value=0.086  Score=50.75  Aligned_cols=107  Identities=17%  Similarity=0.222  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHHHHHHHHHHHHhhh----cccee--eeccceeeeehhhhhHHHH
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVSLSAIYAALVLSCI----FVPTF--RLTVKWTLCVSMMCYLPYI  226 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~slailY~~~~is~~----f~P~I--~lG~K~sLvig~l~Y~iyi  226 (314)
                      +++.+....++.+.++....-+... +.++-++.....++++..+.+...    +...+  ++|.|+.++++.+++++-.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~   82 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF   82 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            4556665556666555444433222 111112223334444455444444    33333  9999999988766554322


Q ss_pred             hhcc----cc-----cceehhhhHHHhccCchhhhchhhhhHh
Q psy853          227 GFQF----YP-----RFYTLVPAGILVGIGAAPMWAAKATYLT  260 (314)
Q Consensus       227 ~s~~----yp-----~~y~li~as~l~G~gagllW~aqg~ylt  260 (314)
                      ...+    .+     ..+..+.+.++.|++.+....+...+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  125 (396)
T TIGR00882        83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIE  125 (396)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Confidence            2111    11     1122344556666666555555554443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=93.25  E-value=0.3  Score=48.30  Aligned_cols=94  Identities=14%  Similarity=0.115  Sum_probs=68.7

Q ss_pred             HhHHhhhhc----ccCCCChhhHHHHHHHHHHHHhhhc-ccee-----eeccceeeeehhhhhHHHHhhcccccceehhh
Q psy853          170 QGTANLQSS----INAKEGLGTVSLSAIYAALVLSCIF-VPTF-----RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVP  239 (314)
Q Consensus       170 ~~~~~LqSS----in~~~~lG~~slailY~~~~is~~f-~P~I-----~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~  239 (314)
                      ...--+|..    ++++.+...-..+.+|....+++.+ +|.+     ++|.|...++-.+.|.+=-.....++.+.++.
T Consensus        47 ~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~  126 (354)
T PF05631_consen   47 MAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLL  126 (354)
T ss_pred             HHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            333445544    2333455555677788776666643 3333     99999999998888888777888999999999


Q ss_pred             hHHHhccCchhhhchh-hhhHhhhh
Q psy853          240 AGILVGIGAAPMWAAK-ATYLTQVG  263 (314)
Q Consensus       240 as~l~G~gagllW~aq-g~ylt~~s  263 (314)
                      +-++.|++.++|+.+- .=+++++-
T Consensus       127 GRvlgGiaTSLLfS~FEsW~V~Eh~  151 (354)
T PF05631_consen  127 GRVLGGIATSLLFSAFESWMVHEHN  151 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999984 44666663

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=93.19  E-value=0.56  Score=45.61  Aligned_cols=97  Identities=14%  Similarity=0.003  Sum_probs=60.8

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV  274 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~  274 (314)
                      ..+++++++.+  +.+.|..+.++.+.-..+.+..+.+..|..+...++.|++.+...+..-+.+.+.+          +
T Consensus       254 ~i~g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~----------~  323 (393)
T PRK11195        254 IAVGAGAAARLVTLETVLRVLPAGILMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRG----------H  323 (393)
T ss_pred             HHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhC----------c
Confidence            44455555555  67777766666433222222122334555566777889988887766555443322          2


Q ss_pred             hhh-HHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          275 DAI-IVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       275 ~~~-~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      ++. +|+.+++.....+.+..+|-.+...+
T Consensus       324 ~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        324 VLVGAGHSIAVQNFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             ccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            333 68999999999999999998887754

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=93.15  E-value=0.44  Score=46.46  Aligned_cols=88  Identities=14%  Similarity=0.046  Sum_probs=55.6

Q ss_pred             eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHH
Q psy853          208 RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFF  286 (314)
Q Consensus       208 ~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~  286 (314)
                      +++.+..++++.+.+.+-.... +.++.+.++...++.|++.+...+...+++.+..          .++.+++..|+..
T Consensus       270 r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~----------p~~~~g~~~g~~~  339 (400)
T PRK11646        270 RFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLA----------DARARGSYMGFSR  339 (400)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcC----------CcccchhhhhHHH
Confidence            4555555555554443322221 2344444555666777777666655555555554          3678899999999


Q ss_pred             HHHHhhHHHHHHHHHHhhh
Q psy853          287 LAWQTAELWGNLISSLETV  305 (314)
Q Consensus       287 ~~~q~s~iiGnLIs~~il~  305 (314)
                      ..+..+..+|..+...+.-
T Consensus       340 ~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        340 LGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             HHHHHHHHhcccchHHHHH
Confidence            9999999999888776643

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=93.13  E-value=0.39  Score=46.03  Aligned_cols=60  Identities=12%  Similarity=-0.003  Sum_probs=44.7

Q ss_pred             ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          234 FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       234 ~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      .+.++.+.++.|+|.+.+.+..-++..+..           ++..+...+++.....++..+|+.+...+.
T Consensus       299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        299 VWTLLVPAALFFFGAGMLFPLATSGAMEPF-----------PYLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            355667778889999988888777765543           234677788888888899988888766543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=93.02  E-value=0.78  Score=43.01  Aligned_cols=96  Identities=14%  Similarity=0.143  Sum_probs=53.6

Q ss_pred             HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc----c--ccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF----Y--PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~----y--p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      .....++.++.+.+  ++|.|+.+.++.+...+-.....    .  +..+.++...++.|++.+..+...-.+..+..  
T Consensus       252 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--  329 (385)
T TIGR00710       252 IIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDF--  329 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Confidence            33445555666665  89999888777554443222221    1  22334455667788888877765555443321  


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHh-hHHHHHHHH
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQT-AELWGNLIS  300 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~-s~iiGnLIs  300 (314)
                               ++.+++..+++..+... +.+.|.+++
T Consensus       330 ---------~~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       330 ---------PHVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             ---------cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence                     24567777777655543 444444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG0569|consensus

Probab=92.96  E-value=0.099  Score=53.74  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhh----HHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhh
Q psy853          188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCY----LPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQ  261 (314)
Q Consensus       188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y----~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~  261 (314)
                      ...++.+.-.++++++++.+  ++|.|.++.++.+.-    .+...+...+....++.+-.+.|+..++.=..+.-|+++
T Consensus        64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E  143 (485)
T KOG0569|consen   64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTE  143 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence            34555556677777888888  999999888876633    344455667777888999999999999999999999999


Q ss_pred             hhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHH
Q psy853          262 VGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWG  296 (314)
Q Consensus       262 ~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiG  296 (314)
                      +|          .++.||.....--....++.++|
T Consensus       144 ~s----------P~~~RG~~g~~~~~~~~~g~ll~  168 (485)
T KOG0569|consen  144 IS----------PKNLRGALGTLLQIGVVIGILLG  168 (485)
T ss_pred             cC----------hhhhccHHHHHHHHHHHHHHHHH
Confidence            98          46666665444333333333333

>PRK09952 shikimate transporter; Provisional

Probab=92.89  E-value=0.64  Score=45.88  Aligned_cols=66  Identities=11%  Similarity=0.023  Sum_probs=37.1

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHHHHhhcc----ccc-ceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF----YPR-FYTLVPAGILVGIGAAPMWAAKATYLTQVG  263 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~----yp~-~y~li~as~l~G~gagllW~aqg~ylt~~s  263 (314)
                      .++..+.+.+  |+|.|+.++++.+.-.+.....+    ... .+.++....+.|++.+..+.....++++..
T Consensus       300 ~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~  372 (438)
T PRK09952        300 CLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMF  372 (438)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3444455555  99999888776543322211111    112 223344455667777777777777776654

>KOG0255|consensus

Probab=92.79  E-value=0.18  Score=50.78  Aligned_cols=80  Identities=14%  Similarity=0.240  Sum_probs=68.3

Q ss_pred             ChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHh
Q psy853          184 GLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLT  260 (314)
Q Consensus       184 ~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt  260 (314)
                      ..-..+.++.+.-..+++++...+  ++|+|.+++++.+.+.++-.. -+-++++.+++.=.+.|++.+..++....+++
T Consensus       118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~  197 (521)
T KOG0255|consen  118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVA  197 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhhe
Confidence            455667778888888888877777  999999999999999988755 55678888899999999999999999999998


Q ss_pred             hhh
Q psy853          261 QVG  263 (314)
Q Consensus       261 ~~s  263 (314)
                      +.-
T Consensus       198 E~~  200 (521)
T KOG0255|consen  198 EIV  200 (521)
T ss_pred             eec
Confidence            775

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=92.33  E-value=0.33  Score=48.75  Aligned_cols=29  Identities=7%  Similarity=-0.092  Sum_probs=20.1

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          275 DAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      .+.|++..|+...+..++.++|+.+...+
T Consensus       423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l  451 (502)
T TIGR00887       423 TRYRSTAHGISAASGKAGAIIGQFGFLYL  451 (502)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence            56677888888777777777776555433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=92.12  E-value=0.81  Score=42.77  Aligned_cols=81  Identities=12%  Similarity=-0.082  Sum_probs=45.9

Q ss_pred             HHHHhhhcccee--eeccceeeeehhhhhHHHHhhc--ccc---cce----ehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853          196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ--FYP---RFY----TLVPAGILVGIGAAPMWAAKATYLTQVGA  264 (314)
Q Consensus       196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~--~yp---~~y----~li~as~l~G~gagllW~aqg~ylt~~s~  264 (314)
                      ...++.++.+.+  |+|.|..+..+....+.-....  .+.   ..+    .++...+..|++.+..|.....+    . 
T Consensus       273 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~-  347 (366)
T TIGR00886       273 LGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHI----F-  347 (366)
T ss_pred             HHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhh----c-
Confidence            345556666666  9999876665554333322221  122   222    23566778888888888654332    2 


Q ss_pred             hhhhhcccchhhhHHHHHHHHHHHHHh
Q psy853          265 VYAKLTDQAVDAIIVRFFGFFFLAWQT  291 (314)
Q Consensus       265 ~y~~~~~~~~~~~~gr~~giF~~~~q~  291 (314)
                                ++..++..|++..+.+.
T Consensus       348 ----------~~~~g~~~g~~~~~~~~  364 (366)
T TIGR00886       348 ----------RRATGAVSGLVGAIGNL  364 (366)
T ss_pred             ----------hhhcccHHHHHHHhccC
Confidence                      23567777777655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=91.86  E-value=0.28  Score=47.20  Aligned_cols=104  Identities=14%  Similarity=0.034  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHH----HHHHHHhhh-cccee-eecc----ceeeeehhhhhHH
Q psy853          155 IGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAI----YAALVLSCI-FVPTF-RLTV----KWTLCVSMMCYLP  224 (314)
Q Consensus       155 vi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slail----Y~~~~is~~-f~P~I-~lG~----K~sLvig~l~Y~i  224 (314)
                      ...+++.+++.|.++....-+....-++-+....-...+    .....++.+ ++|.. +.|.    |..+.++...+.+
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~   85 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            345667777777665544443333222212222222233    333334443 33444 7774    3444444333332


Q ss_pred             HHhhcccccceehhhhHHHhccCchhhhchhhhhH
Q psy853          225 YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYL  259 (314)
Q Consensus       225 yi~s~~yp~~y~li~as~l~G~gagllW~aqg~yl  259 (314)
                      . ...+-++.|.++..-++.|.+.+..++...++.
T Consensus        86 ~-~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~  119 (382)
T TIGR00902        86 A-FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALA  119 (382)
T ss_pred             H-HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHH
Confidence            1 111234566677777778877777776655554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11043 putative transporter; Provisional

Probab=91.79  E-value=1.2  Score=42.67  Aligned_cols=97  Identities=6%  Similarity=-0.066  Sum_probs=54.3

Q ss_pred             HHHHhhhcccee--eeccceeeeehhhhhHHH-----Hhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY-----IGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy-----i~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      .+.++.++...+  ++|.|..+..+.+...+-     ...... +..+.++.+.++.|++.+.++...-++..+..    
T Consensus       250 ~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  325 (401)
T PRK11043        250 AFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPF----  325 (401)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC----
Confidence            344455555555  788777554443332222     122222 23444455667778888777766544443322    


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                             ++.+++..|+...+.......|..+...+
T Consensus       326 -------~~~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        326 -------PQATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             -------cccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                   34578888888877666666666555444

>TIGR00901 2A0125 AmpG-related permease

Probab=91.77  E-value=0.24  Score=46.68  Aligned_cols=96  Identities=11%  Similarity=0.144  Sum_probs=65.4

Q ss_pred             HHhhhcccee-ee-----cccee-eeehhhhhHHHHhh-ccc---ccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          198 VLSCIFVPTF-RL-----TVKWT-LCVSMMCYLPYIGF-QFY---PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       198 ~is~~f~P~I-~l-----G~K~s-Lvig~l~Y~iyi~s-~~y---p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      .+.-+++|.+ ++     |.|+. ++++.+...+..+. -+.   ...+.++....+.|++.+...++..+++.+..   
T Consensus        36 ~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~---  112 (356)
T TIGR00901        36 SLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEIL---  112 (356)
T ss_pred             HHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence            3333555666 54     88887 45666655554322 233   23344556666778888888888888888776   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                             .++.+++..++....+..+.++|+.+...+
T Consensus       113 -------~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l  142 (356)
T TIGR00901       113 -------SDEELGYGSTIYIVGYRAGMLLSGSLALVL  142 (356)
T ss_pred             -------CHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   367788999998888899999888877543

>KOG2504|consensus

Probab=91.72  E-value=0.84  Score=47.08  Aligned_cols=57  Identities=11%  Similarity=0.138  Sum_probs=45.4

Q ss_pred             eeccceeeeehhhhhHH-HHhhcccccc-eehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853          208 RLTVKWTLCVSMMCYLP-YIGFQFYPRF-YTLVPAGILVGIGAAPMWAAKATYLTQVGA  264 (314)
Q Consensus       208 ~lG~K~sLvig~l~Y~i-yi~s~~yp~~-y~li~as~l~G~gagllW~aqg~ylt~~s~  264 (314)
                      ++|+|.++++|++.+++ ++++-|-.+. .+++-.+++.|+|-|+.|...-..+..|-+
T Consensus       107 rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~  165 (509)
T KOG2504|consen  107 RFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE  165 (509)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH
Confidence            99999999999987754 4455554444 456788999999999999998888886654

>PRK03893 putative sialic acid transporter; Provisional

Probab=91.63  E-value=0.29  Score=48.34  Aligned_cols=99  Identities=9%  Similarity=-0.021  Sum_probs=54.6

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-ccc--ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPR--FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL  269 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~--~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~  269 (314)
                      ....++.++.+.+  ++|.|+.++++.+.-.+...... .+.  .+.+.....+.|+.....++...+++.++.      
T Consensus       322 ~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  395 (496)
T PRK03893        322 FGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF------  395 (496)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC------
Confidence            3344555555555  89999888877654444332211 111  122222222222222223344444544443      


Q ss_pred             cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                          .++.+++.+|++..+..++..+|.++...+
T Consensus       396 ----~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l  425 (496)
T PRK03893        396 ----DTEQRAAGLGFTYNVGALGGALAPILGALI  425 (496)
T ss_pred             ----CHHHhhcccchhhhhhhHHHHHHHHHHHHH
Confidence                356788889999988888888888776644

>KOG2325|consensus

Probab=91.59  E-value=0.97  Score=46.62  Aligned_cols=112  Identities=23%  Similarity=0.251  Sum_probs=71.6

Q ss_pred             ChhhHHHHHHHHHHHHhhhc-ccee-----eec-cceeeeehhh----hhHHHHhhcccc--cceehhhhHHHhccCchh
Q psy853          184 GLGTVSLSAIYAALVLSCIF-VPTF-----RLT-VKWTLCVSMM----CYLPYIGFQFYP--RFYTLVPAGILVGIGAAP  250 (314)
Q Consensus       184 ~lG~~slailY~~~~is~~f-~P~I-----~lG-~K~sLvig~l----~Y~iyi~s~~yp--~~y~li~as~l~G~gagl  250 (314)
                      +.+..-..++=+...+++.+ .|.+     |.+ .|+=|+.|.+    +-.+|.+--+.|  ..|.++.+=.+.|+|.+-
T Consensus        67 ~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n  146 (488)
T KOG2325|consen   67 TATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN  146 (488)
T ss_pred             CCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc
Confidence            44444445555556666654 4444     444 3776766654    556674333334  468889999999999765


Q ss_pred             hhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853          251 MWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL  306 (314)
Q Consensus       251 lW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~  306 (314)
                      . +..-+|++..+          ..++|.|.++..-.-+-++.++|..+..+....
T Consensus       147 ~-a~lR~Y~a~~s----------~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L  191 (488)
T KOG2325|consen  147 F-AVLRAYIADAS----------TVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL  191 (488)
T ss_pred             H-HHHHHHHHhcc----------CccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence            4 23445666555          466777888888887888888888887665543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=91.59  E-value=0.58  Score=48.38  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=68.9

Q ss_pred             HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh------cccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF------QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s------~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      +.-..+.++++..+  ++..|+.|+++.+..++-.+.      .=..+.|.++....+.|++.++.+++..+++-+.-  
T Consensus        55 ~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV--  132 (524)
T PF05977_consen   55 TLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELV--  132 (524)
T ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            33445566666666  999999999988765433222      11345677899999999999999999999987775  


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                              .++...+..++.-..++.+.++|..++.++
T Consensus       133 --------~~~~L~~A~al~s~~~niar~iGPalgG~L  162 (524)
T PF05977_consen  133 --------PKEDLPAANALNSISFNIARIIGPALGGIL  162 (524)
T ss_pred             --------cHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence                    234455555666666666666666555544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10091 MFS transport protein AraJ; Provisional

Probab=91.42  E-value=2.4  Score=40.63  Aligned_cols=103  Identities=11%  Similarity=-0.006  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc--ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ--FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~--~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      ++......++.++.+.+  ++|.|+.+.++.....+-....  +-+..+..+....+.|++...++......+.+..   
T Consensus       242 ~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---  318 (382)
T PRK10091        242 MLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNA---  318 (382)
T ss_pred             HHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC---
Confidence            34444566777777877  9999998888776555433222  1223333344444555544433332222222211   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                            ..++..++.  .....++.++.+|..+...+.
T Consensus       319 ------~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~  348 (382)
T PRK10091        319 ------KGGELLGAA--GGQIAFNLGSAIGAYCGGMML  348 (382)
T ss_pred             ------CcchHHHHH--HHHHHHHHHHHHHHHHhHHHH
Confidence                  112334433  335667889999998887654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=91.31  E-value=1.7  Score=42.75  Aligned_cols=29  Identities=14%  Similarity=-0.070  Sum_probs=18.0

Q ss_pred             hhhHHHHHHHHHHHHHhh-HHHHHHHHHHh
Q psy853          275 DAIIVRFFGFFFLAWQTA-ELWGNLISSLE  303 (314)
Q Consensus       275 ~~~~gr~~giF~~~~q~s-~iiGnLIs~~i  303 (314)
                      ++.+++..|++..+.+.+ .++|..+...+
T Consensus       376 ~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l  405 (438)
T TIGR00712       376 KKAAGTAAGFTGLFGYLGGSVAASAIVGYT  405 (438)
T ss_pred             hhheeeehhhhchHHHhhhhhhcchhHHHH
Confidence            456777888887666655 35565554433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=91.03  E-value=1.5  Score=41.43  Aligned_cols=26  Identities=19%  Similarity=0.180  Sum_probs=18.0

Q ss_pred             HHHHhhhcccee--eeccceeeeehhhh
Q psy853          196 ALVLSCIFVPTF--RLTVKWTLCVSMMC  221 (314)
Q Consensus       196 ~~~is~~f~P~I--~lG~K~sLvig~l~  221 (314)
                      ...++.++.+.+  ++|.|..+.++.+.
T Consensus       242 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~  269 (377)
T PRK11102        242 FLFVMTIINSRFVRRVGALNMLRFGLWI  269 (377)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            344555666666  99999988877653

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=90.76  E-value=0.77  Score=46.42  Aligned_cols=127  Identities=20%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhhh-----cccee-eeccceeeeehhhh
Q psy853          148 KWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCI-----FVPTF-RLTVKWTLCVSMMC  221 (314)
Q Consensus       148 k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~~-----f~P~I-~lG~K~sLvig~l~  221 (314)
                      |.+..+|.++--++|.+.|..|.-..-+...++++-++-..-.+.+=+.-.+..-     +.+.. ++|.|+..+++.+.
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            4556789999999999999999988888888876555544444444444444432     22233 99999998888875


Q ss_pred             h--HHHHhh--cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHH
Q psy853          222 Y--LPYIGF--QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFF  285 (314)
Q Consensus       222 Y--~iyi~s--~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF  285 (314)
                      -  +++..+  --+|++|.++..+.++|++.+-+=+++...    +..||+       +..|...||+
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~----s~~fP~-------~~qG~AlGI~  145 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNA----SFFFPK-------EKQGLALGIA  145 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccc----cccCCh-------hhhhHHHHHh
Confidence            3  333333  346777889999999999999887665543    555653       3345555554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=90.29  E-value=0.79  Score=44.33  Aligned_cols=95  Identities=16%  Similarity=0.081  Sum_probs=62.3

Q ss_pred             HHhhhcccee-ee-----ccce-eeeehhhhhHHHH--hhcccc--cceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853          198 VLSCIFVPTF-RL-----TVKW-TLCVSMMCYLPYI--GFQFYP--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY  266 (314)
Q Consensus       198 ~is~~f~P~I-~l-----G~K~-sLvig~l~Y~iyi--~s~~yp--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y  266 (314)
                      .+.-+++|.. ++     |.|+ .++++.+..++-.  ..+..+  +.|.++...++.|+..+...++..+++.+..   
T Consensus        47 ~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~---  123 (402)
T PRK11902         47 IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVL---  123 (402)
T ss_pred             HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            3333455556 77     7765 5777666664322  222222  3455666667777888888888888887775   


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                             .+++++++.++....+..+.++|+.+...
T Consensus       124 -------~~~~r~~~~~~~~~g~~~g~i~g~~l~~~  152 (402)
T PRK11902        124 -------HPEERGAGAAVKVLGYRLAMLVSGGLALW  152 (402)
T ss_pred             -------ChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence                   35668899999888888888888765543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=89.27  E-value=0.91  Score=44.43  Aligned_cols=29  Identities=0%  Similarity=-0.173  Sum_probs=23.9

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          275 DAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      .+.+++..|+...+.+++.++|..+...+
T Consensus       364 ~~~~~~a~g~~~~~~~~g~~~~p~~~g~i  392 (412)
T TIGR02332       364 LQARAIAIAVINATGNIGSALSPFLIGIL  392 (412)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence            55788999999999999999998776544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=89.13  E-value=1.9  Score=42.55  Aligned_cols=58  Identities=16%  Similarity=0.111  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhc-----ccCCC-ChhhHHHHHHHHHHHHhhhcccee--eeccc
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSS-----INAKE-GLGTVSLSAIYAALVLSCIFVPTF--RLTVK  212 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSS-----in~~~-~lG~~slailY~~~~is~~f~P~I--~lG~K  212 (314)
                      +++.+.+..++.+.++.........     .+... ..|. ..++.+....++.++...+  +++.|
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~-~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGL-LSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4555566666665555544333222     11111 1222 2334566666666666666  55433

>PRK11010 ampG muropeptide transporter; Validated

Probab=88.63  E-value=2.5  Score=42.78  Aligned_cols=95  Identities=11%  Similarity=0.034  Sum_probs=48.2

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-----cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-----QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-----~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      ....++.++.+.+  ++|.|+.++++.++.++....     ...+..+.++....+..++.++...+.-+++.+++.   
T Consensus       270 i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~---  346 (491)
T PRK11010        270 LATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCN---  346 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence            3556777777777  999888777766544433222     112333333444445344444444444455555542   


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLI  299 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLI  299 (314)
                             ++..++-+|+..++..++.++++.+
T Consensus       347 -------~~~~~t~~gl~~s~~~lg~~~~~~~  371 (491)
T PRK11010        347 -------KSFSATQFALLSALSAVGRVYVGPV  371 (491)
T ss_pred             -------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence                   2223344555555555555544443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=88.40  E-value=0.15  Score=52.79  Aligned_cols=70  Identities=23%  Similarity=0.423  Sum_probs=3.0

Q ss_pred             ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh-CCCCCCC
Q psy853          234 FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV-LPDIPEP  312 (314)
Q Consensus       234 ~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~-~~~~~~~  312 (314)
                      ++.++.|-++.|+|++++|+---+|+-++.          .++.-+.|.|+++++..+|.++|=+++...|. ..|+++.
T Consensus       141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv----------~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~  210 (539)
T PF03137_consen  141 FYVFILGQLLIGIGATPLYTLGITYIDDNV----------SKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKV  210 (539)
T ss_dssp             -----------SSS------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhccccCCccceeeeecccc----------ccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccc
Confidence            466789999999999999999999999987          35567899999999999999999999887774 4677765


Q ss_pred             C
Q psy853          313 S  313 (314)
Q Consensus       313 ~  313 (314)
                      +
T Consensus       211 ~  211 (539)
T PF03137_consen  211 P  211 (539)
T ss_dssp             -
T ss_pred             c
Confidence            3

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=88.24  E-value=5  Score=39.51  Aligned_cols=70  Identities=7%  Similarity=-0.131  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATY  258 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~y  258 (314)
                      -++...+.++++.++...+  |++.|+.+.+..++-.+-.+.......+..+.+-++.|+..+++|++--+.
T Consensus       274 ~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl  345 (410)
T TIGR00885       274 YNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGI  345 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556678888888777  999988776665544444333333323334677788899999999644333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=87.48  E-value=3.5  Score=42.27  Aligned_cols=144  Identities=13%  Similarity=0.093  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhhhhc-----ccC-C--------C--ChhhHHHHHHHHHHHHhhhcccee--eecc-
Q psy853          151 ILKNIGSLSLAFMVQFTAFQGTANLQSS-----INA-K--------E--GLGTVSLSAIYAALVLSCIFVPTF--RLTV-  211 (314)
Q Consensus       151 ~l~Nvi~lsi~F~l~ftAf~~~~~LqSS-----in~-~--------~--~lG~~slailY~~~~is~~f~P~I--~lG~-  211 (314)
                      .-+.+..+++.-++...+|.+.....+.     +.. .        +  ..|..++.+......+.+++.|.+  ++|. 
T Consensus       256 mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~  335 (477)
T TIGR01301       256 LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG  335 (477)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3456778888888888888887776543     211 1        1  136677766666667888889988  8985 


Q ss_pred             ceeeeeh----hhhhHHHHhhccc---------------cc---ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853          212 KWTLCVS----MMCYLPYIGFQFY---------------PR---FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL  269 (314)
Q Consensus       212 K~sLvig----~l~Y~iyi~s~~y---------------p~---~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~  269 (314)
                      |..-.++    .+++.........               |.   .+..+...++.|+.-+.+-.-.-+.++++..     
T Consensus       336 k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~-----  410 (477)
T TIGR01301       336 KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS-----  410 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc-----
Confidence            5553444    3333322211111               11   2445556666776655544444444444331     


Q ss_pred             cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                         ++++..|.+.|++-.+..+.|++-++.+..
T Consensus       411 ---~~~~~~G~~mgilN~~I~lpQii~sl~~g~  440 (477)
T TIGR01301       411 ---NLGAGQGLSMGVLNLAIVIPQIIVSLGSGP  440 (477)
T ss_pred             ---ccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence               123456889999999988888888876655

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=87.17  E-value=6.4  Score=39.76  Aligned_cols=92  Identities=12%  Similarity=0.107  Sum_probs=72.9

Q ss_pred             cccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHH
Q psy853          203 FVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVR  280 (314)
Q Consensus       203 f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr  280 (314)
                      ..|.+  +-..++-..++.+++..-+.+-...+.+.+.++-.+.|+|.|++=++.-+-....+          .++..|.
T Consensus       268 l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt----------~~~~aG~  337 (403)
T PF03209_consen  268 LSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLT----------SAGRAGL  337 (403)
T ss_pred             hcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCC----------CCcchhH
Confidence            34444  33455666777788888888888888999999999999999999888777776666          3567889


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          281 FFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       281 ~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      +.|.|-....++.-+|+.+...++
T Consensus       338 ~mG~WGaaQA~A~Glg~~~GG~~~  361 (403)
T PF03209_consen  338 FMGAWGAAQAIARGLGTFLGGALR  361 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888888888776654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10133 L-fucose transporter; Provisional

Probab=86.51  E-value=4.3  Score=40.36  Aligned_cols=72  Identities=8%  Similarity=-0.036  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQ  261 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~  261 (314)
                      .++.....+.+++++...+  |+|.|+.+.++.++-+...+. -+.+.. ..+.+-++.|++.+.+|...-+...+
T Consensus       300 ~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~  374 (438)
T PRK10133        300 YLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIK  374 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3344445556666666666  999998887776544332222 223332 23456678999999999776554433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=86.32  E-value=2.4  Score=44.83  Aligned_cols=58  Identities=17%  Similarity=0.167  Sum_probs=40.2

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHH-HHhhcccccceehhhhHHHhccCchhhhch
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLP-YIGFQFYPRFYTLVPAGILVGIGAAPMWAA  254 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~i-yi~s~~yp~~y~li~as~l~G~gagllW~a  254 (314)
                      .++++.+...+  .+|.||.+++|.+.+.+ .+.+---.+.-+++.+.++.|+|+|..-..
T Consensus        91 ~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~  151 (599)
T PF06609_consen   91 SAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELA  151 (599)
T ss_pred             HHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHH
Confidence            44555555555  99999999998876543 223333455667888999999998876544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=86.14  E-value=2.2  Score=41.22  Aligned_cols=68  Identities=15%  Similarity=-0.030  Sum_probs=37.8

Q ss_pred             HHHHhhhcccee--eeccceeeeehhhhhHHHHhh----ccc-ccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853          196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF----QFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVG  263 (314)
Q Consensus       196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s----~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s  263 (314)
                      ...++.++.+.+  ++|.|+.++++.++..+....    .+. ++.+.++.+..+.++..++.+.+.......+.
T Consensus       258 ~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  332 (402)
T PRK11902        258 ATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALC  332 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355667777776  899988887776654433222    122 34455555554544555555554444444444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=86.04  E-value=1.3  Score=42.52  Aligned_cols=66  Identities=12%  Similarity=0.033  Sum_probs=36.2

Q ss_pred             HHHHhhhcccee--eecc----ceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853          196 ALVLSCIFVPTF--RLTV----KWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQV  262 (314)
Q Consensus       196 ~~~is~~f~P~I--~lG~----K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~  262 (314)
                      ...++.++...+  ++|.    +..+.++..+..+ .....-++.|.++....+.|++.+..|.+..++....
T Consensus        51 ~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~  122 (382)
T PRK11128         51 ARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV-AFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW  122 (382)
T ss_pred             HHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            334445444443  7775    2333333333222 1112235567777788888998888888766655443

>PRK15075 citrate-proton symporter; Provisional

Probab=85.39  E-value=1.9  Score=42.23  Aligned_cols=95  Identities=12%  Similarity=0.010  Sum_probs=46.7

Q ss_pred             HHHhhhcccee--eeccceeeeehhhhhHHHH--h-hcc--cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853          197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI--G-FQF--YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL  269 (314)
Q Consensus       197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi--~-s~~--yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~  269 (314)
                      ..+++++.+.+  ++|.|+.++++.++-.+..  . ...  .+....+....++.|++.+..+.....++.+..      
T Consensus       287 ~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~------  360 (434)
T PRK15075        287 NFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVM------  360 (434)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHC------
Confidence            44555555656  8999998877654322211  1 111  111112223334555666655555555555544      


Q ss_pred             cccchhhhHHHHHHHHHHHHHh-hHHHHHHHHH
Q psy853          270 TDQAVDAIIVRFFGFFFLAWQT-AELWGNLISS  301 (314)
Q Consensus       270 ~~~~~~~~~gr~~giF~~~~q~-s~iiGnLIs~  301 (314)
                          .++.+++..|+.+.+... +..+|+.+..
T Consensus       361 ----p~~~rg~~~g~~~~~~~~~~g~~~p~~~g  389 (434)
T PRK15075        361 ----PAEVRTAGFSLAYSLATAIFGGFTPAIST  389 (434)
T ss_pred             ----CCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence                244566666665544443 2344444443

>PRK15011 sugar efflux transporter B; Provisional

Probab=85.11  E-value=5.2  Score=38.58  Aligned_cols=94  Identities=11%  Similarity=0.046  Sum_probs=43.1

Q ss_pred             hcccee-eeccceeeeehh-hhhHH-HHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhH
Q psy853          202 IFVPTF-RLTVKWTLCVSM-MCYLP-YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAII  278 (314)
Q Consensus       202 ~f~P~I-~lG~K~sLvig~-l~Y~i-yi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~  278 (314)
                      ++.... ++|.|+.+++.. +..++ ..+..+-++.+.++....+.|...+..++..-.+..+...        ++++..
T Consensus        70 ~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  141 (393)
T PRK15011         70 FLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHAD--------KTGREA  141 (393)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh--------hccchH
Confidence            333334 999998754433 32211 1111122334444444444444444555544444433221        011223


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          279 VRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       279 gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      +.+.++......++.++|.++...+
T Consensus       142 ~~~~~~~~~~~~lg~~~g~~i~~~l  166 (393)
T PRK15011        142 VMFSSFLRAQVSLAWVIGPPLAYAL  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4555666556666666666555443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=84.73  E-value=8.1  Score=36.88  Aligned_cols=61  Identities=10%  Similarity=-0.051  Sum_probs=33.5

Q ss_pred             HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhh
Q psy853          192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMW  252 (314)
Q Consensus       192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW  252 (314)
                      +......++.++.+.+  ++|.|+.++++.+...+-...... +..+..+....+.++|.+..|
T Consensus       247 ~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  310 (392)
T PRK10473        247 LTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGF  310 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344455666777776  999999888877655443333222 222233344444454444444

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=84.70  E-value=0.32  Score=46.40  Aligned_cols=143  Identities=18%  Similarity=0.277  Sum_probs=1.1

Q ss_pred             hhhhHHHHHHHHHHHHHH----HHHHhHH-hhhhcccCCCChhhHHHHHHHHHHHHhhhcccee----ee---ccceeee
Q psy853          149 WRILKNIGSLSLAFMVQF----TAFQGTA-NLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF----RL---TVKWTLC  216 (314)
Q Consensus       149 ~~~l~Nvi~lsi~F~l~f----tAf~~~~-~LqSSin~~~~lG~~slailY~~~~is~~f~P~I----~l---G~K~sLv  216 (314)
                      +.+++.+....+..++.|    ..|-+.. .+++..+. +.-.+..-.+++..|.++=+++-.+    ++   .+||.++
T Consensus       139 ~~v~~~i~~~~~~i~~~f~vTl~~FP~it~~v~s~~~~-~~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~  217 (309)
T PF01733_consen  139 WVVLKKIWPYALSIFLVFFVTLSVFPGITSAVQSSNNP-DWSSYFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI  217 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhheeeeccceeeeeeccccC-CCccHHHHHHHHHHHHHHHHhcchhcceeEecccccccHHH
Confidence            345555655555544444    4444441 12222121 1111333345677777777765544    23   4777666


Q ss_pred             ehhh---hhHHHHhhccccc----------ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc-hhhhHHHHH
Q psy853          217 VSMM---CYLPYIGFQFYPR----------FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA-VDAIIVRFF  282 (314)
Q Consensus       217 ig~l---~Y~iyi~s~~yp~----------~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~-~~~~~gr~~  282 (314)
                      .+.+   .+++|+.++..|.          .+..++--++.|+..|-+        +..+--|+...-++ +++..|...
T Consensus       218 ~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl--------~tl~m~~~p~~v~~~e~e~aG~~~  289 (309)
T PF01733_consen  218 LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL--------STLAMMYAPKSVSPEERELAGSVM  289 (309)
T ss_dssp             ---------------------------------------------------------HHHH-------------------
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh--------hhceeeeCCCcCCHHHHHHHHHHH
Confidence            5332   5677788876644          233344455666555533        22222222222212 223333333


Q ss_pred             HHHHHHHHhhHHHHHHHHHHh
Q psy853          283 GFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       283 giF~~~~q~s~iiGnLIs~~i  303 (314)
                      ++   +..+|...|..+++++
T Consensus       290 ~~---~L~~Gl~~Gs~ls~~~  307 (309)
T PF01733_consen  290 SF---FLSFGLFIGSVLSFLL  307 (309)
T ss_dssp             ---------------------
T ss_pred             HH---HHHHHHHHHHHHHHHh
Confidence            33   3467778888887754

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=84.34  E-value=3.3  Score=41.81  Aligned_cols=119  Identities=18%  Similarity=0.184  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHHHHHHHHHHHHhhhcccee------eeccceeeeehhhhh---
Q psy853          153 KNIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVSLSAIYAALVLSCIFVPTF------RLTVKWTLCVSMMCY---  222 (314)
Q Consensus       153 ~Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~slailY~~~~is~~f~P~I------~lG~K~sLvig~l~Y---  222 (314)
                      +|.+.++.-+++.|.+|......-+- +++..|+.-.-..++|++.++..++..++      |+|-|+-++.-...-   
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence            36677777777777776665555332 22224666778889999988887765433      899777765443222   


Q ss_pred             -HHHHhhcccccc-eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853          223 -LPYIGFQFYPRF-YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD  271 (314)
Q Consensus       223 -~iyi~s~~yp~~-y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~  271 (314)
                       ++|..--+.|-. .-.+.+.++.|+--++.|.+-..-.-.++++.++..+
T Consensus        87 ~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~  137 (412)
T PF01306_consen   87 FGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNG  137 (412)
T ss_dssp             CHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhc
Confidence             222221122221 2234566677777778787776666666666666544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3762|consensus

Probab=83.91  E-value=0.79  Score=48.07  Aligned_cols=62  Identities=21%  Similarity=0.447  Sum_probs=49.5

Q ss_pred             hcccee--eeccceeeeehhhhhHHHH-hhcccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853          202 IFVPTF--RLTVKWTLCVSMMCYLPYI-GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG  263 (314)
Q Consensus       202 ~f~P~I--~lG~K~sLvig~l~Y~iyi-~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s  263 (314)
                      +|.-.+  |+|--..|.+|..|++.=. +--+.-++|.++|--++.|+.-+.+|++..+|+...+
T Consensus       424 ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~va  488 (618)
T KOG3762|consen  424 FFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVA  488 (618)
T ss_pred             HHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            333354  9999999999887765533 2234456899999999999999999999999998887

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=83.11  E-value=7.4  Score=39.83  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhcc--cCCCChhhHHHHHHHHHHHHhhh---cccee--eeccceeeeehhhhhHHHH
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSSI--NAKEGLGTVSLSAIYAALVLSCI---FVPTF--RLTVKWTLCVSMMCYLPYI  226 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSSi--n~~~~lG~~slailY~~~~is~~---f~P~I--~lG~K~sLvig~l~Y~iyi  226 (314)
                      +++++++..++.|+.|.++...-...  +..+..+  .+...+....+..+   +...+  |+|.|+.+.++.+...+..
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~--~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVN--ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS  330 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH--HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence            57888888888898888776422111  1111111  11111222233333   33344  9999998888776554443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=82.65  E-value=5.3  Score=42.33  Aligned_cols=109  Identities=15%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             hhhHHHHHHHHHHHHhhhcccee--eec-cceeeeehhhhhHHHHhhccc--c-cceehhhhHHHhccCchhhhchhhhh
Q psy853          185 LGTVSLSAIYAALVLSCIFVPTF--RLT-VKWTLCVSMMCYLPYIGFQFY--P-RFYTLVPAGILVGIGAAPMWAAKATY  258 (314)
Q Consensus       185 lG~~slailY~~~~is~~f~P~I--~lG-~K~sLvig~l~Y~iyi~s~~y--p-~~y~li~as~l~G~gagllW~aqg~y  258 (314)
                      .|..++..-++.. +++++.+.+  +++ .||.++++.+..+.|.++..-  | +....+.-.++.|+|.|  |+..-.+
T Consensus       351 ~~~~s~~~~fg~~-~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG--~~~~~~~  427 (599)
T PF06609_consen  351 IGWISSPVGFGSC-AGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIG--GILVPAI  427 (599)
T ss_pred             eehhhhhHHHHHH-HHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHH--HHHHHHH
Confidence            3445554444333 334444444  444 899999999888888766432  2 22233455667776654  3333332


Q ss_pred             H-hhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853          259 L-TQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV  305 (314)
Q Consensus       259 l-t~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~  305 (314)
                      + ++...         .++.++.-+|+--+++..+..+|..+-.-++.
T Consensus       428 ~~~ql~~---------p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  428 VIAQLIV---------PDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             HeeEeee---------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            2 33331         36789999999999999999999988766553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=81.87  E-value=5.3  Score=42.19  Aligned_cols=52  Identities=8%  Similarity=-0.048  Sum_probs=39.8

Q ss_pred             eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853          235 YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS  301 (314)
Q Consensus       235 y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~  301 (314)
                      -.+++++++.|++.|..|...-....+.               -|+.+|..+-+..++..+|.++-.
T Consensus       453 ~~L~~~~~lvg~~~G~~~~~~~~i~sel---------------Fgk~~g~~yN~~~~a~pigs~~~n  504 (591)
T PTZ00207        453 AALPLPYFIAAFANGFMAATIALVTRTI---------------FAKDPAKHYNFCFLGSVLSAIFLN  504 (591)
T ss_pred             cHhHHHHHHHHHHhhHhHHHHHHHHHHH---------------hccchHHHhhHHhHHHHHHHHHHH
Confidence            5889999999999999998887765444               345667777777777777776653

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=81.84  E-value=6.2  Score=33.76  Aligned_cols=106  Identities=17%  Similarity=0.226  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH-Hhhccccc--ceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY-IGFQFYPR--FYTLVPAGILVGIGAAPMWAAKATYLTQVGA  264 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy-i~s~~yp~--~y~li~as~l~G~gagllW~aqg~ylt~~s~  264 (314)
                      .+.......++.++.+.+  +.|.|..++++...+... +...+.+.  .+.++....+.|++.+..+.....++.+...
T Consensus        45 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  124 (338)
T COG0477          45 LSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP  124 (338)
T ss_pred             HHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence            333333444444455554  668887777766543332 22222333  4556677777999999999888888877752


Q ss_pred             hhhhhcccchhhhHHHHHHHHHH-HHHhhHHHHHHHHHHhh
Q psy853          265 VYAKLTDQAVDAIIVRFFGFFFL-AWQTAELWGNLISSLET  304 (314)
Q Consensus       265 ~y~~~~~~~~~~~~gr~~giF~~-~~q~s~iiGnLIs~~il  304 (314)
                      +         ...++...++... ....+.++|.++...+.
T Consensus       125 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477         125 E---------ATERGLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             c---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1         0456777777777 57778888886665544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=81.10  E-value=13  Score=36.22  Aligned_cols=30  Identities=10%  Similarity=-0.078  Sum_probs=21.3

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          275 DAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      ++.+++..|+...+-+++.++|.++...++
T Consensus       311 ~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       311 KELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             hhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            556778888888888888777776654433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=81.04  E-value=9.1  Score=36.88  Aligned_cols=103  Identities=9%  Similarity=-0.030  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHh----hhcccee--e----ecc-ceeeeehhhhhHHHHh-hcccccc------eehhhhHHHhccCc
Q psy853          187 TVSLSAIYAALVLS----CIFVPTF--R----LTV-KWTLCVSMMCYLPYIG-FQFYPRF------YTLVPAGILVGIGA  248 (314)
Q Consensus       187 ~~slailY~~~~is----~~f~P~I--~----lG~-K~sLvig~l~Y~iyi~-s~~yp~~------y~li~as~l~G~ga  248 (314)
                      ....+.+.....+.    ..+...+  +    +|. |.-++++.+..++-.. ..+-|..      +.++....+.|++.
T Consensus        34 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (437)
T TIGR00792        34 AAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFY  113 (437)
T ss_pred             HHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH
Confidence            34444444444444    3344444  5    444 3356677666664333 3333432      22344455556666


Q ss_pred             hhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy853          249 APMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNL  298 (314)
Q Consensus       249 gllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnL  298 (314)
                      +...+...+...+.+.         +++.|++..++.......+.+++.+
T Consensus       114 ~~~~~~~~al~~~~~~---------~~~~R~~~~~~~~~~~~~g~~l~~~  154 (437)
T TIGR00792       114 SFVNIPYWSLVPAITL---------DPRERESLSTFRRFGATLGGLLVAV  154 (437)
T ss_pred             HhhcccHhhCcccccC---------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655555555444431         2345666666655544554444433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=81.01  E-value=3  Score=41.81  Aligned_cols=112  Identities=13%  Similarity=0.124  Sum_probs=75.7

Q ss_pred             hcccCCCChhhHHHHHHH----HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchh
Q psy853          177 SSINAKEGLGTVSLSAIY----AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAP  250 (314)
Q Consensus       177 SSin~~~~lG~~slailY----~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagl  250 (314)
                      ..+.++-|+.+...+++-    .+|++.++++|.+  |+|.+.+++++.+.-++=++-+-+...+.++.+.++.|+|.++
T Consensus        36 ~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~G~gIav  115 (395)
T COG2807          36 DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLAGAGIAV  115 (395)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhHHH
Confidence            344444455555444443    4578888899998  9999999999988777777767777788899999999999988


Q ss_pred             hhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy853          251 MWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLI  299 (314)
Q Consensus       251 lW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLI  299 (314)
                      .-+--...+-+.           -.+..+..+|++-...+.+...|..+
T Consensus       116 ~nVLLPslIK~~-----------Fpk~~~~mtglYs~sl~~~aaLaa~l  153 (395)
T COG2807         116 INVLLPSLIKRD-----------FPKRVGLMTGLYSTSLGAGAALAAAL  153 (395)
T ss_pred             HHHhhhHHHHhh-----------cccchhhHHhHHHHHHHHHHHHHhhh
Confidence            766555544221           23445666666655555555544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.38
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.14
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.99
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.57
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.43
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.2
2xut_A	524	Proton/peptide symporter family protein; transport	97.05
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.75
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.13
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	95.44
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.04
2xut_A	524	Proton/peptide symporter family protein; transport	93.21
2cfq_A	417	Lactose permease; transport, transport mechanism,	90.21
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	85.79

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.38  E-value=3.1e-07  Score=86.02  Aligned_cols=144  Identities=11%  Similarity=0.035  Sum_probs=101.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHH----HHHHHHHHHhhhcccee--eeccceeeeehhhhhHH
Q psy853          151 ILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSL----SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP  224 (314)
Q Consensus       151 ~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~sl----ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i  224 (314)
                      ..+.++.+.+.+++....+.....+...+.++-++.....    ++.+....++.++...+  ++|.|+.++++.+.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~  103 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence            3556666776766655544433333332222112222223    33444444555555555  99999999999998877


Q ss_pred             HHhhc----ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          225 YIGFQ----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       225 yi~s~----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                      -....    +.++.+.++.+-++.|++.+..+++..+++.+..          .++.+++..+++.....++.++|.++.
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~  173 (438)
T 3o7q_A          104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66554    4567788899999999999999999999998886          467789999999999999999999988


Q ss_pred             HHhh
Q psy853          301 SLET  304 (314)
Q Consensus       301 ~~il  304 (314)
                      ..+.
T Consensus       174 ~~l~  177 (438)
T 3o7q_A          174 QSLI  177 (438)
T ss_dssp             THHH
T ss_pred             HHHH
Confidence            7765

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.14  E-value=2.8e-06  Score=79.67  Aligned_cols=142  Identities=13%  Similarity=0.043  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhhhhccc---CC-CChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853          152 LKNIGSLSLAFMVQFTAFQGTANLQSSIN---AK-EGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY  225 (314)
Q Consensus       152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin---~~-~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy  225 (314)
                      .+.++.+.+++++..........+...+.   .. ...| ...++.+....++.++...+  ++|.|+.++++.+.+++-
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~  105 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV  105 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence            44566666666555544333333322221   11 1233 23444555566666666666  999999999999887766


Q ss_pred             Hhhc-c----cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853          226 IGFQ-F----YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS  300 (314)
Q Consensus       226 i~s~-~----yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs  300 (314)
                      .... +    -++.+.++.+-++.|++.+..+++..+++.+..          .++.+++..+++.....++.++|.++.
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~  175 (451)
T 1pw4_A          106 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLF  175 (451)
T ss_dssp             HHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHC----------CchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5443 3    467778899999999999999999999998876          357799999999999999999999888


Q ss_pred             HHhh
Q psy853          301 SLET  304 (314)
Q Consensus       301 ~~il  304 (314)
                      ..++
T Consensus       176 ~~l~  179 (451)
T 1pw4_A          176 LLGM  179 (451)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.99  E-value=7.2e-05  Score=69.94  Aligned_cols=143  Identities=9%  Similarity=-0.062  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhcccCC-CChhhHH----HHHHHHHHHHhhhcccee--ee--ccceeeeehhhhhH
Q psy853          153 KNIGSLSLAFMVQFTAFQGTANLQSSINAK-EGLGTVS----LSAIYAALVLSCIFVPTF--RL--TVKWTLCVSMMCYL  223 (314)
Q Consensus       153 ~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~-~~lG~~s----lailY~~~~is~~f~P~I--~l--G~K~sLvig~l~Y~  223 (314)
                      ++++.+.+..++...++.+........-.+ .+.....    .++......++.++.+.+  ++  |.|+.++++.+...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            455566666666666666555544332221 2332222    333333444555556655  88  99998888776654


Q ss_pred             -HHHhhccc-c--cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHh-hHHHHHH
Q psy853          224 -PYIGFQFY-P--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQT-AELWGNL  298 (314)
Q Consensus       224 -iyi~s~~y-p--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~-s~iiGnL  298 (314)
                       +......+ +  +.+.++...++.|++.+..+.....++.+..          .++.+++..|++..+.+. +..+|..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~g~~~~~~  401 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA  401 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh----------chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence             33333322 2  4555677778888888888877777777665          356799999999999999 9999998


Q ss_pred             HHHHhhh
Q psy853          299 ISSLETV  305 (314)
Q Consensus       299 Is~~il~  305 (314)
                      +...+.-
T Consensus       402 ~~g~l~~  408 (451)
T 1pw4_A          402 IVGYTVD  408 (451)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.57  E-value=8.4e-05  Score=68.34  Aligned_cols=105  Identities=14%  Similarity=0.113  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      ..++.+....++.++.+.+  ++|.|+.++++.+.+.+-.... +.++.+.++.+.++.|++.+..+++...++.+..  
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~--  117 (375)
T 2gfp_A           40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY--  117 (375)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHC--
Confidence            3344445555666666666  9999999999988776655443 3356677888999999999999999999988876  


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                              +++.+++..+++......+.++|.++...+
T Consensus       118 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  147 (375)
T 2gfp_A          118 --------ERTQLRHANSLLNMGILVSPLLAPLIGGLL  147 (375)
T ss_dssp             --------HTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             --------CHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence                    345678888999988899888888876644

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.43  E-value=0.00017  Score=68.80  Aligned_cols=107  Identities=13%  Similarity=0.005  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhhhcccee--e-eccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--R-LTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV  265 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~-lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~  265 (314)
                      .++.+....+++++...+  + +|.|++++++.+.+.+..... +-++.+.++.+-++.|++.+..+++..+++.+... 
T Consensus        60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-  138 (491)
T 4aps_A           60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD-  138 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC-
Confidence            344444455566666666  8 899999999998887765543 34567778889999999999999999999888752 


Q ss_pred             hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                             ++++.+++.++++.....++.++|.++...+.
T Consensus       139 -------~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  170 (491)
T 4aps_A          139 -------EHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ  170 (491)
T ss_dssp             -------SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------cccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence                   12334777888888888888888887776543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.20  E-value=0.00067  Score=64.46  Aligned_cols=106  Identities=12%  Similarity=0.047  Sum_probs=83.7

Q ss_pred             HHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-------------------ccccceehhhhHHHhccCchhh
Q psy853          193 IYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-------------------FYPRFYTLVPAGILVGIGAAPM  251 (314)
Q Consensus       193 lY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-------------------~yp~~y~li~as~l~G~gagll  251 (314)
                      .+.-..+++++...+  ++|.|++++++.+.+.+....-                   +-++.+.++.+=.+.|+|.|..
T Consensus        64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~  143 (491)
T 4gc0_A           64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            344455666666666  9999999999999888775432                   2355677888899999999999


Q ss_pred             hchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCC
Q psy853          252 WAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPD  308 (314)
Q Consensus       252 W~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~  308 (314)
                      ++....|+.+.+          .++.|++..+++......+.+++.++.+......+
T Consensus       144 ~~~~~~~i~E~~----------p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  190 (491)
T 4gc0_A          144 SMLSPMYIAELA----------PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD  190 (491)
T ss_dssp             HHHHHHHHHTTS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhhC----------CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccc
Confidence            999999999987          46788999999888888888888887776655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.05  E-value=0.00061  Score=65.60  Aligned_cols=103  Identities=10%  Similarity=0.148  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhhhcccee--ee-ccceeeeehhhhhHHHHhhc-ccc-cceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RL-TVKWTLCVSMMCYLPYIGFQ-FYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGA  264 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~l-G~K~sLvig~l~Y~iyi~s~-~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~  264 (314)
                      .++.+....++.++.+.+  ++ |.|+.++++.+.+.+-.... +.+ +.+.++.+-++.|++.+..+++..+++.+...
T Consensus        60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  139 (524)
T 2xut_A           60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD  139 (524)
T ss_dssp             HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence            344445556666666666  88 99999999888777655443 334 66778888999999999999999999887752


Q ss_pred             hhhhhcccchhhhH---HHHHHHHHHHHHhhHHHHHHHHHH
Q psy853          265 VYAKLTDQAVDAII---VRFFGFFFLAWQTAELWGNLISSL  302 (314)
Q Consensus       265 ~y~~~~~~~~~~~~---gr~~giF~~~~q~s~iiGnLIs~~  302 (314)
                                ++.+   ...++++.....++.++|.++...
T Consensus       140 ----------~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~  170 (524)
T 2xut_A          140 ----------QSNKSLAQKAFDMFYFTINFGSFFASLSMPL  170 (524)
T ss_dssp             ----------TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred             ----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      2233   344455777777777777665443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.75  E-value=0.0047  Score=57.42  Aligned_cols=102  Identities=6%  Similarity=-0.136  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA  267 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~  267 (314)
                      .++......++.++.+.+  ++|.|+.+.++.+...+......+......+...++.|++.+..+...-.+..+..    
T Consensus       301 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----  376 (438)
T 3o7q_A          301 LTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNL----  376 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence            334445556666667666  99999999988887766655544443333445558888888888876555544432    


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                            .++ +++..++.. +..++..+|..+...+
T Consensus       377 ------~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l  404 (438)
T 3o7q_A          377 ------GQD-TKYGSSFIV-MTIIGGGIVTPVMGFV  404 (438)
T ss_dssp             ------GGG-HHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred             ------ccc-ccchhhHHH-HHHHHHHHHHHHHHHH
Confidence                  122 555555554 5557777777766544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.13  E-value=0.0028  Score=58.02  Aligned_cols=137  Identities=13%  Similarity=0.118  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhcccCC-CChhhHHHHHHHHHHHHhhhcccee--eeccce--eeeehhhh-h----H
Q psy853          154 NIGSLSLAFMVQFTAFQGTANLQSSINAK-EGLGTVSLSAIYAALVLSCIFVPTF--RLTVKW--TLCVSMMC-Y----L  223 (314)
Q Consensus       154 Nvi~lsi~F~l~ftAf~~~~~LqSSin~~-~~lG~~slailY~~~~is~~f~P~I--~lG~K~--sLvig~l~-Y----~  223 (314)
                      ++..+.+..++.+.++.+........-.+ .+......+.++....++.++...+  ++..|.  .+.++... .    .
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  279 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLL  279 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555566665554443332211 1233333444555555555444333  333332  22332222 1    1


Q ss_pred             HHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853          224 PYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS  301 (314)
Q Consensus       224 iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~  301 (314)
                      ++..... .++.+.++.+.++.|++.+..++....++.+..           ++.+++..|+.....+++..+|+.+..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-----------p~~~g~~~g~~~~~~~~g~~~~~~~~g  347 (375)
T 2gfp_A          280 MWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF-----------PFLAGTAGALVGGLQNIGSGVLASLSA  347 (375)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHH-----------HHHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred             HHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC-----------CcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            1111110 124455667888999999999998888877664           256899999998888888877765543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=95.44  E-value=0.008  Score=57.08  Aligned_cols=61  Identities=16%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          233 RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       233 ~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      ..+.++++.++.|++.+..++..-.++.+..          .++.+++..|++....+++..+|..+...+
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~  445 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLA----------PKAFNSQMMSMWFLSSSVGSALNAQLVTLY  445 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT----------TTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455678889999999988888877777665          356678888998888888888888776543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.04  E-value=0.043  Score=51.61  Aligned_cols=97  Identities=14%  Similarity=0.032  Sum_probs=55.2

Q ss_pred             HHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853          195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD  271 (314)
Q Consensus       195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~  271 (314)
                      ....++.++.+.+  |+|.|+.++++.+..++-... .+.++.+.++...++.|++.+..+...-.|+.+..        
T Consensus       270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------  341 (417)
T 2cfq_A          270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF--------  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
Confidence            3444556666666  999999998887776653322 22344455556666667665555554445554443        


Q ss_pred             cchhhhHHHHHHH-HHHHHHhhHHHHHHHHH
Q psy853          272 QAVDAIIVRFFGF-FFLAWQTAELWGNLISS  301 (314)
Q Consensus       272 ~~~~~~~gr~~gi-F~~~~q~s~iiGnLIs~  301 (314)
                        .++.+++..++ +.....++.++|+++..
T Consensus       342 --p~~~~g~~~g~~~~~~~~lg~~~gp~l~G  370 (417)
T 2cfq_A          342 --EVRFSATIYLVCFCFFKQLAMIFMSVLAG  370 (417)
T ss_dssp             --CHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred             --CHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence              24556665555 23444455555554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=93.21  E-value=0.022  Score=54.58  Aligned_cols=61  Identities=15%  Similarity=0.175  Sum_probs=48.8

Q ss_pred             cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853          233 RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE  303 (314)
Q Consensus       233 ~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i  303 (314)
                      ..+.++++.++.|++.+..++..-.++.+..          .++.+++..|++..+.+++.++|..+...+
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~  464 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQA----------PKAMKGTIMSFWTLSVTVGNLWVLLANVSV  464 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHC----------CTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------cHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455678889999999999988888877765          356788889999999999998888877654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=90.21  E-value=0.21  Score=46.92  Aligned_cols=73  Identities=19%  Similarity=0.154  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc----ccccc-eehhhhHHHhccCchhhhchhhhhHhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ----FYPRF-YTLVPAGILVGIGAAPMWAAKATYLTQV  262 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~----~yp~~-y~li~as~l~G~gagllW~aqg~ylt~~  262 (314)
                      .++......++.++...+  ++|.|+.++++.+.+.+.....    +.+.. ...+.+-.+.|++.+..|.+.......+
T Consensus        49 ~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  128 (417)
T 2cfq_A           49 FAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF  128 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            334445555666666666  9999999998887765432211    11110 1123455667777777776554444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=85.79  E-value=0.023  Score=53.75  Aligned_cols=72  Identities=6%  Similarity=-0.006  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhhcccC----CCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853          155 IGSLSLAFMVQFTAFQGTANLQSSINA----KEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI  226 (314)
Q Consensus       155 vi~lsi~F~l~ftAf~~~~~LqSSin~----~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi  226 (314)
                      .+.+...++..++.+.........+..    ..........+......++++++..+  ++|.|+.++.+..+..+..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence            444445555556655555544433321    11112223334444555555665555  9999999988877665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.82
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.26
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=6.9e-06  Score=73.87  Aligned_cols=105  Identities=13%  Similarity=0.009  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-----ccccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853          190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQV  262 (314)
Q Consensus       190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~  262 (314)
                      .++.+...++++++...+  ++|.|+.+.++.+...+.....     +..+.+.++...++.|++.+..|++...++.+.
T Consensus        65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  144 (447)
T d1pw4a_          65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  144 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            445556667777777766  9999999999888776544322     223566778899999999999999999998877


Q ss_pred             hhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853          263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET  304 (314)
Q Consensus       263 s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il  304 (314)
                      .          .++.+++..+++.....++.++|.++...+.
T Consensus       145 ~----------~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_         145 W----------SQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             C----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             H----------HhhcccccccccccccchhhhhhhhhhhhHh
Confidence            5          3667899999999999999988887766544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=2.4e-05  Score=67.88  Aligned_cols=96  Identities=15%  Similarity=0.021  Sum_probs=71.3

Q ss_pred             HHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853          198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV  274 (314)
Q Consensus       198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~  274 (314)
                      .++..+.+.+  +.|.|+.+.++.+...+.... .+.++.+.+++..++.|++.+..++...+++.+..          .
T Consensus       273 ~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------~  342 (417)
T d1pv7a_         273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF----------E  342 (417)
T ss_dssp             HHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------C
T ss_pred             ccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC----------C
Confidence            3344445544  899999999988877665544 44567778889999999999999999988887775          4


Q ss_pred             hhhHHHHHHHHHHH-HHhhHHHHHHHHHHh
Q psy853          275 DAIIVRFFGFFFLA-WQTAELWGNLISSLE  303 (314)
Q Consensus       275 ~~~~gr~~giF~~~-~q~s~iiGnLIs~~i  303 (314)
                      ++.+++..|+...+ ..++.++|+++...+
T Consensus       343 ~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l  372 (417)
T d1pv7a_         343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNM  372 (417)
T ss_dssp             GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66788888876643 557778887776544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.0021  Score=57.08  Aligned_cols=141  Identities=7%  Similarity=-0.087  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhcc-cCCCChh----hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhH--
Q psy853          153 KNIGSLSLAFMVQFTAFQGTANLQSSI-NAKEGLG----TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYL--  223 (314)
Q Consensus       153 ~Nvi~lsi~F~l~ftAf~~~~~LqSSi-n~~~~lG----~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~--  223 (314)
                      +.++.+.+..++.+..+.+........ .+..+..    ....++......++.++.+.+  +++.|.......+...  
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  328 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  328 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHH
Confidence            345555555555555555554443332 2222222    223334444455555666655  6665543322222221  


Q ss_pred             ---HHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHh-hHHHHHH
Q psy853          224 ---PYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQT-AELWGNL  298 (314)
Q Consensus       224 ---iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~-s~iiGnL  298 (314)
                         +....... .+.+..+...++.|++.+..+.....+..+..          .++.+++..|+...+... +.++|++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------p~~~~g~~~g~~~~~~~~~g~~~~~~  398 (447)
T d1pw4a_         329 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA  398 (447)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11111111 23445566777778887777777777766654          356788888888766555 5566776


Q ss_pred             HHHHh
Q psy853          299 ISSLE  303 (314)
Q Consensus       299 Is~~i  303 (314)
                      +...+
T Consensus       399 ~~g~~  403 (447)
T d1pw4a_         399 IVGYT  403 (447)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0047  Score=52.81  Aligned_cols=109  Identities=17%  Similarity=0.185  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHHHHHHHHHHHHhhhc----ccee--eeccceeeeehhhhhHH
Q psy853          152 LKNIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVSLSAIYAALVLSCIF----VPTF--RLTVKWTLCVSMMCYLP  224 (314)
Q Consensus       152 l~Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~slailY~~~~is~~f----~P~I--~lG~K~sLvig~l~Y~i  224 (314)
                      -+|.+++++.+++.+.++.....+... +.++-|+.....+.+...+.+...+    ...+  ++|.|+.++++.+...+
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            357788888877777666544433222 2222233344445555555554443    3334  99999999988776665


Q ss_pred             HHhhccc----cc-ceehhhhHHHhccCchhhhchhhhhHh
Q psy853          225 YIGFQFY----PR-FYTLVPAGILVGIGAAPMWAAKATYLT  260 (314)
Q Consensus       225 yi~s~~y----p~-~y~li~as~l~G~gagllW~aqg~ylt  260 (314)
                      .......    +. .+..+....+.|.+.+....+......
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (417)
T d1pv7a_          86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVE  126 (417)
T ss_dssp             THHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHH
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhccc
Confidence            5544332    11 233455666666666665555444433